Query 004984
Match_columns 721
No_of_seqs 501 out of 2389
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-32 4.4E-37 296.7 35.1 320 361-683 48-385 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 6.2E-31 2.1E-35 283.5 40.1 333 361-706 14-370 (388)
3 3hve_A Gigaxonin; ubiquitin, c 100.0 1.7E-31 6E-36 277.4 15.6 200 175-384 25-237 (256)
4 3ieg_A DNAJ homolog subfamily 100.0 6.7E-28 2.3E-32 252.6 40.7 303 361-679 18-348 (359)
5 3hym_B Cell division cycle pro 100.0 1.7E-28 5.7E-33 255.1 34.4 276 385-684 24-317 (330)
6 2y4t_A DNAJ homolog subfamily 100.0 8.1E-28 2.8E-32 262.7 37.9 304 361-680 41-372 (450)
7 3i3n_A Kelch-like protein 11; 100.0 2.6E-31 9E-36 279.7 9.5 200 175-382 26-243 (279)
8 3ieg_A DNAJ homolog subfamily 100.0 3.1E-27 1.1E-31 247.5 38.8 297 382-706 2-337 (359)
9 2h6f_A Protein farnesyltransfe 100.0 8.5E-29 2.9E-33 272.1 21.8 251 414-684 96-366 (382)
10 2y4t_A DNAJ homolog subfamily 100.0 6.4E-27 2.2E-31 255.6 36.5 295 382-704 25-358 (450)
11 2xpi_A Anaphase-promoting comp 100.0 1.4E-26 4.7E-31 262.7 35.8 293 364-684 290-597 (597)
12 4g1t_A Interferon-induced prot 100.0 1.6E-26 5.5E-31 254.8 33.5 319 347-672 53-406 (472)
13 1fch_A Peroxisomal targeting s 100.0 2.3E-27 8E-32 251.7 25.3 271 392-685 34-344 (368)
14 2gw1_A Mitochondrial precursor 100.0 1.5E-26 5.2E-31 255.8 30.5 335 361-703 21-477 (514)
15 1fch_A Peroxisomal targeting s 100.0 1.3E-26 4.6E-31 245.8 26.8 260 383-667 64-359 (368)
16 3fp2_A TPR repeat-containing p 99.9 4.2E-26 1.4E-30 254.5 30.6 326 349-703 29-456 (537)
17 4eqf_A PEX5-related protein; a 99.9 1.2E-26 4.2E-31 247.4 24.1 259 384-666 66-355 (365)
18 2gw1_A Mitochondrial precursor 99.9 1.1E-25 3.7E-30 249.0 32.1 275 383-682 186-494 (514)
19 4eqf_A PEX5-related protein; a 99.9 2.5E-26 8.4E-31 245.1 25.3 245 416-682 66-338 (365)
20 3fp2_A TPR repeat-containing p 99.9 1.3E-25 4.6E-30 250.5 32.0 278 397-699 216-529 (537)
21 2h6f_A Protein farnesyltransfe 99.9 3.5E-26 1.2E-30 251.3 25.6 245 382-651 96-366 (382)
22 3cv0_A Peroxisome targeting si 99.9 4.7E-26 1.6E-30 236.3 25.2 263 383-669 21-317 (327)
23 4g1t_A Interferon-induced prot 99.9 3.1E-25 1.1E-29 244.6 31.5 266 383-672 51-368 (472)
24 2xpi_A Anaphase-promoting comp 99.9 8E-25 2.7E-29 248.2 34.7 289 387-703 276-578 (597)
25 3hym_B Cell division cycle pro 99.9 6.5E-25 2.2E-29 228.0 29.7 275 361-656 37-323 (330)
26 2pl2_A Hypothetical conserved 99.9 3.2E-25 1.1E-29 222.6 21.8 179 462-665 22-212 (217)
27 3htm_A Speckle-type POZ protei 99.9 3.8E-26 1.3E-30 222.4 12.5 143 175-321 28-170 (172)
28 3cv0_A Peroxisome targeting si 99.9 2.8E-24 9.6E-29 222.9 27.0 247 415-685 21-300 (327)
29 3uq3_A Heat shock protein STI1 99.9 3E-24 1E-28 215.0 25.9 234 382-676 4-252 (258)
30 2pl2_A Hypothetical conserved 99.9 8.5E-24 2.9E-28 212.2 25.4 185 476-685 2-199 (217)
31 3u4t_A TPR repeat-containing p 99.9 4.1E-24 1.4E-28 217.3 23.3 231 384-672 4-255 (272)
32 3mkr_A Coatomer subunit epsilo 99.9 1.8E-23 6.3E-28 220.3 28.9 249 393-672 9-269 (291)
33 3u4t_A TPR repeat-containing p 99.9 2.2E-23 7.4E-28 211.9 25.5 238 361-652 18-269 (272)
34 4a1s_A PINS, partner of inscut 99.9 8.7E-24 3E-28 228.3 22.4 291 381-689 46-394 (411)
35 3uq3_A Heat shock protein STI1 99.9 4.6E-23 1.6E-27 206.3 26.0 232 349-647 9-256 (258)
36 3vtx_A MAMA; tetratricopeptide 99.9 2.3E-23 8E-28 200.8 22.2 174 477-674 3-177 (184)
37 3sf4_A G-protein-signaling mod 99.9 9.5E-24 3.2E-28 225.7 20.1 285 383-685 9-361 (406)
38 3ro2_A PINS homolog, G-protein 99.9 3.3E-23 1.1E-27 213.6 20.7 271 383-671 5-336 (338)
39 3hqi_A Speckle-type POZ protei 99.9 3.6E-24 1.2E-28 228.5 13.5 142 175-320 168-309 (312)
40 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.5E-23 1.2E-27 210.0 20.0 245 389-661 11-269 (275)
41 4eoz_A Speckle-type POZ protei 99.9 1.1E-24 3.9E-29 206.0 4.9 126 175-304 19-144 (145)
42 4abn_A Tetratricopeptide repea 99.9 2.7E-22 9.1E-27 225.7 23.3 212 429-664 82-318 (474)
43 1ouv_A Conserved hypothetical 99.9 4.3E-21 1.5E-25 197.0 30.2 232 383-677 6-261 (273)
44 2q7f_A YRRB protein; TPR, prot 99.9 8.3E-22 2.8E-26 196.1 22.6 206 448-680 29-236 (243)
45 2vkp_A BTB/POZ domain-containi 99.9 4.6E-23 1.6E-27 185.9 10.9 103 176-282 3-109 (109)
46 4gyw_A UDP-N-acetylglucosamine 99.9 2.1E-22 7E-27 238.2 19.6 175 474-672 4-179 (723)
47 3vtx_A MAMA; tetratricopeptide 99.9 1.5E-21 5E-26 188.2 20.0 164 383-546 5-175 (184)
48 4abn_A Tetratricopeptide repea 99.9 3.1E-21 1.1E-25 216.9 24.8 197 462-683 85-304 (474)
49 2ond_A Cleavage stimulation fa 99.9 1.1E-20 3.8E-25 199.1 26.9 231 400-670 33-273 (308)
50 3mkr_A Coatomer subunit epsilo 99.9 1.3E-20 4.3E-25 198.6 27.0 243 385-661 36-288 (291)
51 2if5_A Zinc finger and BTB dom 99.9 1.1E-22 3.7E-27 186.8 9.6 101 175-278 19-119 (120)
52 2q7f_A YRRB protein; TPR, prot 99.9 4E-21 1.4E-25 191.2 21.6 217 383-653 23-242 (243)
53 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.4E-21 1.8E-25 193.8 22.9 221 425-671 15-248 (275)
54 3sf4_A G-protein-signaling mod 99.9 2.1E-21 7.2E-26 207.4 19.5 303 351-672 15-382 (406)
55 1r29_A B-cell lymphoma 6 prote 99.9 2.8E-22 9.7E-27 186.0 9.9 102 175-280 23-125 (127)
56 2ho1_A Type 4 fimbrial biogene 99.9 6E-20 2.1E-24 184.6 25.9 188 462-673 54-244 (252)
57 2xm6_A Protein corresponding t 99.9 1.2E-18 4.1E-23 195.3 38.8 319 362-703 59-431 (490)
58 4i17_A Hypothetical protein; T 99.9 2.1E-20 7.2E-25 186.6 21.6 168 460-678 22-221 (228)
59 2z8h_A Transcription regulator 99.9 2.2E-22 7.5E-27 189.8 6.4 105 175-283 30-134 (138)
60 2xm6_A Protein corresponding t 99.9 2.9E-18 9.8E-23 192.2 40.8 289 362-672 95-437 (490)
61 2ppi_A Gigaxonin; BTB domain, 99.9 4.7E-22 1.6E-26 189.2 8.4 102 175-279 41-144 (144)
62 4a1s_A PINS, partner of inscut 99.9 9E-21 3.1E-25 204.7 19.2 267 415-703 48-371 (411)
63 3b84_A Zinc finger and BTB dom 99.9 4E-22 1.4E-26 183.2 6.4 98 176-280 19-116 (119)
64 3dra_A Protein farnesyltransfe 99.8 1.3E-19 4.3E-24 193.4 26.0 227 432-682 50-304 (306)
65 3dss_A Geranylgeranyl transfer 99.8 7E-20 2.4E-24 197.1 23.5 225 462-713 47-311 (331)
66 2vq2_A PILW, putative fimbrial 99.8 3E-19 1E-23 174.6 26.0 204 415-672 8-216 (225)
67 1buo_A POZ domain, protein (pr 99.8 2E-21 6.8E-26 179.0 9.3 100 175-282 22-121 (121)
68 2vpk_A Myoneurin; transcriptio 99.8 1.5E-21 5.2E-26 178.3 8.1 99 176-279 17-115 (116)
69 2vq2_A PILW, putative fimbrial 99.8 6.5E-19 2.2E-23 172.3 27.4 210 382-645 7-223 (225)
70 2ond_A Cleavage stimulation fa 99.8 8.5E-20 2.9E-24 192.4 22.5 247 365-680 35-306 (308)
71 2ho1_A Type 4 fimbrial biogene 99.8 4.1E-19 1.4E-23 178.5 26.5 209 382-644 36-249 (252)
72 4gyw_A UDP-N-acetylglucosamine 99.8 1.7E-20 5.6E-25 221.9 18.7 164 382-545 8-178 (723)
73 4i17_A Hypothetical protein; T 99.8 1.2E-19 4E-24 181.2 21.8 202 417-649 9-225 (228)
74 2yy9_A Zinc finger and BTB dom 99.8 8.6E-22 2.9E-26 185.2 5.7 102 175-283 19-120 (135)
75 1qqe_A Vesicular transport pro 99.8 3.7E-20 1.2E-24 194.1 17.4 199 462-678 54-280 (292)
76 2pzi_A Probable serine/threoni 99.8 2E-20 6.9E-25 219.8 16.8 199 443-666 388-597 (681)
77 2ihc_A Transcription regulator 99.8 3.5E-22 1.2E-26 185.0 1.1 101 175-279 23-123 (124)
78 3ro2_A PINS homolog, G-protein 99.8 4.9E-20 1.7E-24 189.8 16.6 266 417-704 7-332 (338)
79 3ohu_A Transcription regulator 99.8 5.7E-22 2E-26 183.5 1.3 100 175-278 26-125 (125)
80 2pzi_A Probable serine/threoni 99.8 9.3E-20 3.2E-24 214.2 18.6 183 473-683 388-580 (681)
81 2q81_A MIZ-1 protein; BTB/POZ 99.8 4.6E-21 1.6E-25 176.1 5.8 97 175-279 21-117 (119)
82 3ga1_A Nucleus accumbens-assoc 99.8 2.3E-21 7.9E-26 180.6 3.6 101 175-281 27-127 (129)
83 3dra_A Protein farnesyltransfe 99.8 6.7E-19 2.3E-23 187.7 23.1 201 461-683 49-270 (306)
84 3nf1_A KLC 1, kinesin light ch 99.8 1.8E-19 6.3E-24 185.2 16.5 247 381-670 25-310 (311)
85 1hz4_A MALT regulatory protein 99.8 3.3E-18 1.1E-22 183.2 26.6 289 383-704 14-349 (373)
86 3e4b_A ALGK; tetratricopeptide 99.8 1.6E-18 5.3E-23 193.8 24.3 159 384-547 36-214 (452)
87 1ouv_A Conserved hypothetical 99.8 3.3E-17 1.1E-21 168.0 30.8 208 462-703 23-250 (273)
88 3ulq_A Response regulator aspa 99.8 1.1E-18 3.7E-23 188.5 20.4 190 462-670 160-371 (383)
89 3dss_A Geranylgeranyl transfer 99.8 1.4E-17 4.9E-22 179.1 28.7 191 462-676 91-313 (331)
90 3urz_A Uncharacterized protein 99.8 1.6E-18 5.4E-23 172.5 19.5 171 479-674 4-193 (208)
91 3m5b_A Zinc finger and BTB dom 99.8 4.1E-20 1.4E-24 170.2 7.1 94 175-280 24-117 (119)
92 3nf1_A KLC 1, kinesin light ch 99.8 1.7E-19 6E-24 185.3 12.4 233 415-703 27-306 (311)
93 3qky_A Outer membrane assembly 99.8 5.4E-18 1.8E-22 173.1 23.3 182 470-672 6-229 (261)
94 1dce_A Protein (RAB geranylger 99.8 1.7E-19 5.9E-24 207.8 13.0 186 462-671 46-271 (567)
95 4ga2_A E3 SUMO-protein ligase 99.8 2.4E-19 8.1E-24 169.8 11.4 145 448-653 3-149 (150)
96 2ooe_A Cleavage stimulation fa 99.8 6.2E-17 2.1E-21 183.1 32.7 315 361-707 27-458 (530)
97 3urz_A Uncharacterized protein 99.8 1.7E-18 5.6E-23 172.4 17.1 163 383-545 4-190 (208)
98 1qqe_A Vesicular transport pro 99.8 2.6E-18 8.7E-23 180.0 19.2 207 434-672 4-233 (292)
99 4ga2_A E3 SUMO-protein ligase 99.8 3.3E-19 1.1E-23 168.8 10.8 144 484-685 2-148 (150)
100 4gco_A Protein STI-1; structur 99.8 1.1E-18 3.8E-23 160.7 13.9 122 469-648 3-125 (126)
101 2ooe_A Cleavage stimulation fa 99.8 7.1E-16 2.4E-20 174.4 39.6 252 396-670 143-457 (530)
102 3e4b_A ALGK; tetratricopeptide 99.8 1.6E-17 5.6E-22 185.5 25.3 278 364-684 56-367 (452)
103 3qky_A Outer membrane assembly 99.8 3.3E-18 1.1E-22 174.7 18.1 69 590-658 168-252 (261)
104 3as5_A MAMA; tetratricopeptide 99.8 1E-17 3.5E-22 158.1 19.5 170 479-672 8-178 (186)
105 3ulq_A Response regulator aspa 99.8 9.8E-18 3.4E-22 180.9 21.8 236 383-636 103-371 (383)
106 2r5s_A Uncharacterized protein 99.8 2.7E-18 9.1E-23 165.8 14.8 168 475-666 2-172 (176)
107 3fkc_A Transcriptional regulat 99.8 7.9E-19 2.7E-23 160.7 9.4 91 175-272 25-115 (116)
108 3edt_B KLC 2, kinesin light ch 99.8 3.2E-18 1.1E-22 172.7 13.8 202 418-668 46-282 (283)
109 3qou_A Protein YBBN; thioredox 99.8 1.9E-17 6.4E-22 173.5 19.9 168 475-666 113-283 (287)
110 3q15_A PSP28, response regulat 99.8 9.2E-17 3.1E-21 173.4 24.9 235 382-670 100-368 (378)
111 2vsy_A XCC0866; transferase, g 99.7 2.9E-17 1E-21 187.6 19.1 161 460-678 4-169 (568)
112 2ifu_A Gamma-SNAP; membrane fu 99.7 5.9E-18 2E-22 178.6 12.1 207 395-672 3-228 (307)
113 2yhc_A BAMD, UPF0169 lipoprote 99.7 2E-16 6.8E-21 158.9 22.3 169 462-671 21-217 (225)
114 3q7a_A Farnesyltransferase alp 99.7 2.7E-16 9.1E-21 170.1 23.8 177 461-654 70-258 (349)
115 3as5_A MAMA; tetratricopeptide 99.7 1.3E-16 4.5E-21 150.4 18.8 166 382-547 7-179 (186)
116 2yhc_A BAMD, UPF0169 lipoprote 99.7 6.3E-17 2.2E-21 162.5 17.3 192 383-641 4-221 (225)
117 4gco_A Protein STI-1; structur 99.7 5.1E-17 1.7E-21 149.6 14.8 121 503-681 3-125 (126)
118 1p5q_A FKBP52, FK506-binding p 99.7 7.5E-19 2.6E-23 188.8 2.5 147 462-666 130-293 (336)
119 3q7a_A Farnesyltransferase alp 99.7 4.5E-17 1.5E-21 176.1 15.9 191 471-685 46-256 (349)
120 1hz4_A MALT regulatory protein 99.7 2.7E-15 9.1E-20 160.6 28.5 302 349-678 18-360 (373)
121 4f3v_A ESX-1 secretion system 99.7 2.1E-17 7.2E-22 173.7 10.3 200 459-688 20-254 (282)
122 2r5s_A Uncharacterized protein 99.7 2E-16 6.8E-21 152.6 14.6 155 385-540 8-172 (176)
123 3gyz_A Chaperone protein IPGC; 99.7 6.5E-17 2.2E-21 154.6 10.9 69 604-672 70-138 (151)
124 1dce_A Protein (RAB geranylger 99.7 6.8E-16 2.3E-20 177.8 19.7 175 488-686 37-241 (567)
125 1p5q_A FKBP52, FK506-binding p 99.7 4.8E-18 1.6E-22 182.5 0.8 177 462-683 82-276 (336)
126 3gyz_A Chaperone protein IPGC; 99.7 1.5E-16 5E-21 152.1 10.8 114 467-638 24-138 (151)
127 2c2l_A CHIP, carboxy terminus 99.6 6.8E-16 2.3E-20 161.3 13.6 219 461-709 20-251 (281)
128 1hh8_A P67PHOX, NCF-2, neutrop 99.6 5.4E-15 1.8E-19 145.0 18.6 143 480-682 7-166 (213)
129 3rjv_A Putative SEL1 repeat pr 99.6 9.4E-15 3.2E-19 145.9 20.4 186 400-677 3-207 (212)
130 2vsy_A XCC0866; transferase, g 99.6 4.1E-15 1.4E-19 169.8 20.1 159 429-645 3-169 (568)
131 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3.8E-17 1.3E-21 183.0 2.4 188 397-660 200-407 (457)
132 2vgx_A Chaperone SYCD; alterna 99.6 3E-15 1E-19 141.5 14.8 122 467-646 9-131 (148)
133 3qou_A Protein YBBN; thioredox 99.6 8.2E-15 2.8E-19 153.4 19.4 142 468-633 140-284 (287)
134 2hr2_A Hypothetical protein; a 99.6 1E-15 3.4E-20 147.5 10.9 115 479-644 11-142 (159)
135 2ifu_A Gamma-SNAP; membrane fu 99.6 4.6E-15 1.6E-19 156.4 16.8 207 397-670 30-266 (307)
136 3q15_A PSP28, response regulat 99.6 2.4E-14 8.1E-19 154.5 21.4 226 417-685 103-350 (378)
137 1xi4_A Clathrin heavy chain; a 99.6 3.4E-13 1.2E-17 164.5 33.6 241 421-684 1055-1327(1630)
138 2xcb_A PCRH, regulatory protei 99.6 3.2E-15 1.1E-19 139.1 11.6 127 466-650 5-132 (142)
139 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 4.6E-17 1.6E-21 182.3 -1.6 150 491-683 246-397 (457)
140 2hr2_A Hypothetical protein; a 99.6 1.1E-15 3.9E-20 147.1 8.2 114 512-671 11-135 (159)
141 2vgx_A Chaperone SYCD; alterna 99.6 6.4E-15 2.2E-19 139.2 13.1 115 500-672 8-123 (148)
142 3edt_B KLC 2, kinesin light ch 99.6 3.7E-14 1.3E-18 142.8 18.7 182 361-542 16-282 (283)
143 2fo7_A Synthetic consensus TPR 99.6 7.6E-14 2.6E-18 123.8 18.1 133 480-670 2-135 (136)
144 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2.6E-14 8.9E-19 140.0 15.9 134 382-546 5-155 (213)
145 4f3v_A ESX-1 secretion system 99.6 1.2E-14 4.2E-19 152.6 13.6 204 387-644 11-247 (282)
146 1xi4_A Clathrin heavy chain; a 99.6 1.8E-12 6.2E-17 158.2 33.4 254 383-658 1105-1375(1630)
147 2xcb_A PCRH, regulatory protei 99.6 1.5E-14 5E-19 134.6 11.6 115 500-672 5-120 (142)
148 1a17_A Serine/threonine protei 99.5 1.2E-13 4.2E-18 128.8 17.1 132 479-668 13-147 (166)
149 3upv_A Heat shock protein STI1 99.5 6.9E-14 2.4E-18 126.3 14.7 116 476-649 1-123 (126)
150 3sz7_A HSC70 cochaperone (SGT) 99.5 7.6E-14 2.6E-18 132.4 15.0 119 474-650 6-125 (164)
151 2fbn_A 70 kDa peptidylprolyl i 99.5 1.1E-14 3.8E-19 142.6 8.4 168 448-685 10-194 (198)
152 2c2l_A CHIP, carboxy terminus 99.5 7.7E-14 2.6E-18 145.6 14.4 168 476-672 1-169 (281)
153 2ast_A S-phase kinase-associat 99.5 5.7E-14 1.9E-18 135.6 11.3 112 184-299 3-145 (159)
154 2fo7_A Synthetic consensus TPR 99.5 7E-13 2.4E-17 117.5 17.5 125 420-544 6-135 (136)
155 3rjv_A Putative SEL1 repeat pr 99.5 5.1E-13 1.7E-17 133.3 18.5 161 382-545 17-201 (212)
156 4gcn_A Protein STI-1; structur 99.5 3.5E-14 1.2E-18 130.4 9.2 113 477-641 6-119 (127)
157 4gcn_A Protein STI-1; structur 99.5 4.3E-14 1.5E-18 129.8 9.2 96 447-545 13-116 (127)
158 2qfc_A PLCR protein; TPR, HTH, 99.5 8.2E-13 2.8E-17 137.6 19.7 179 475-671 71-270 (293)
159 2lni_A Stress-induced-phosphop 99.5 3.9E-13 1.3E-17 120.3 14.8 122 474-653 11-133 (133)
160 2vyi_A SGTA protein; chaperone 99.5 2.7E-13 9.1E-18 120.3 13.5 126 472-655 5-131 (131)
161 2e2e_A Formate-dependent nitri 99.5 1.4E-13 4.8E-18 131.6 11.7 82 462-543 27-112 (177)
162 2e2e_A Formate-dependent nitri 99.5 3.8E-13 1.3E-17 128.6 14.5 126 489-672 20-149 (177)
163 3sz7_A HSC70 cochaperone (SGT) 99.5 1.6E-13 5.5E-18 130.1 11.8 110 574-683 14-125 (164)
164 1wao_1 Serine/threonine protei 99.5 1.1E-14 3.9E-19 164.0 3.9 138 477-672 4-155 (477)
165 3upv_A Heat shock protein STI1 99.5 4.7E-13 1.6E-17 120.8 13.5 81 462-542 21-102 (126)
166 3u3w_A Transcriptional activat 99.5 2E-12 6.7E-17 134.7 19.6 167 485-669 81-268 (293)
167 1zu2_A Mitochondrial import re 99.4 1.3E-13 4.4E-18 132.6 9.0 84 462-545 19-124 (158)
168 3rkv_A Putative peptidylprolyl 99.4 4.1E-13 1.4E-17 127.1 12.3 67 479-545 11-96 (162)
169 3rkv_A Putative peptidylprolyl 99.4 4.1E-13 1.4E-17 127.1 12.0 139 415-570 11-150 (162)
170 1hxi_A PEX5, peroxisome target 99.4 5.5E-13 1.9E-17 121.4 12.1 79 594-672 41-119 (121)
171 3q49_B STIP1 homology and U bo 99.4 1.1E-12 3.8E-17 119.1 14.0 121 473-651 3-129 (137)
172 1b89_A Protein (clathrin heavy 99.4 6.4E-14 2.2E-18 155.3 6.4 256 384-665 33-309 (449)
173 1a17_A Serine/threonine protei 99.4 2.1E-12 7E-17 120.4 15.7 134 381-544 11-149 (166)
174 2if4_A ATFKBP42; FKBP-like, al 99.4 4.4E-14 1.5E-18 151.8 4.4 140 475-672 175-333 (338)
175 3gw4_A Uncharacterized protein 99.4 1.1E-12 3.8E-17 126.6 13.2 157 462-672 9-181 (203)
176 1na0_A Designed protein CTPR3; 99.4 6E-12 2.1E-16 110.5 16.6 121 474-652 3-125 (125)
177 3mv2_B Coatomer subunit epsilo 99.4 4.1E-12 1.4E-16 135.1 18.4 242 394-672 24-287 (310)
178 2qfc_A PLCR protein; TPR, HTH, 99.4 5.8E-12 2E-16 131.1 19.2 162 383-544 75-269 (293)
179 1hxi_A PEX5, peroxisome target 99.4 6.3E-13 2.2E-17 121.0 10.1 95 449-546 24-119 (121)
180 2fbn_A 70 kDa peptidylprolyl i 99.4 4.4E-13 1.5E-17 131.1 9.7 164 477-682 2-167 (198)
181 1zu2_A Mitochondrial import re 99.4 4.6E-13 1.6E-17 128.7 9.1 92 590-682 22-134 (158)
182 2dba_A Smooth muscle cell asso 99.4 5.4E-12 1.8E-16 115.2 14.9 120 471-648 20-143 (148)
183 1wao_1 Serine/threonine protei 99.4 2.4E-13 8.1E-18 153.2 6.4 139 446-611 10-162 (477)
184 2if4_A ATFKBP42; FKBP-like, al 99.3 9.1E-13 3.1E-17 141.5 8.0 154 382-546 178-333 (338)
185 2kck_A TPR repeat; tetratricop 99.3 8.4E-12 2.9E-16 107.8 12.0 71 474-544 1-72 (112)
186 1elw_A TPR1-domain of HOP; HOP 99.3 2.9E-11 9.9E-16 105.2 15.3 65 480-544 5-70 (118)
187 3q49_B STIP1 homology and U bo 99.3 1.7E-11 5.9E-16 111.1 14.1 86 460-545 24-110 (137)
188 1b89_A Protein (clathrin heavy 99.3 1.3E-12 4.5E-17 144.8 7.8 237 391-682 11-252 (449)
189 2lni_A Stress-induced-phosphop 99.3 1.7E-11 5.9E-16 109.5 13.6 84 462-545 33-117 (133)
190 3u3w_A Transcriptional activat 99.3 2E-11 6.8E-16 127.1 16.1 158 386-543 78-268 (293)
191 1ihg_A Cyclophilin 40; ppiase 99.3 1E-11 3.6E-16 135.3 14.5 124 479-660 223-363 (370)
192 3k9i_A BH0479 protein; putativ 99.3 3.9E-12 1.3E-16 114.0 8.8 100 589-688 9-113 (117)
193 2vyi_A SGTA protein; chaperone 99.3 2.2E-11 7.7E-16 107.7 13.5 67 462-528 63-130 (131)
194 2xev_A YBGF; tetratricopeptide 99.3 3.7E-11 1.3E-15 107.7 15.1 119 480-653 3-125 (129)
195 3ro3_A PINS homolog, G-protein 99.3 5.2E-12 1.8E-16 115.6 9.3 140 479-670 9-161 (164)
196 1elw_A TPR1-domain of HOP; HOP 99.3 2.6E-11 8.8E-16 105.5 13.0 92 589-680 23-115 (118)
197 2xev_A YBGF; tetratricopeptide 99.3 4.1E-11 1.4E-15 107.5 14.3 107 515-676 5-115 (129)
198 1na0_A Designed protein CTPR3; 99.3 8.9E-11 3E-15 102.9 15.9 113 512-682 9-122 (125)
199 3k9i_A BH0479 protein; putativ 99.3 5E-12 1.7E-16 113.3 7.9 88 459-546 4-95 (117)
200 2kck_A TPR repeat; tetratricop 99.3 2.7E-11 9.2E-16 104.6 12.0 72 600-671 36-110 (112)
201 2dba_A Smooth muscle cell asso 99.3 2.5E-11 8.7E-16 110.7 12.4 118 508-680 23-142 (148)
202 1ihg_A Cyclophilin 40; ppiase 99.3 2E-11 6.8E-16 133.1 13.3 138 382-571 222-360 (370)
203 3gw4_A Uncharacterized protein 99.3 2.6E-11 8.8E-16 117.0 12.4 151 395-545 4-180 (203)
204 1elr_A TPR2A-domain of HOP; HO 99.2 4E-11 1.4E-15 106.3 11.8 125 476-652 1-126 (131)
205 4b4t_Q 26S proteasome regulato 99.2 5.9E-11 2E-15 128.7 15.1 218 419-667 8-245 (434)
206 4ajy_C Transcription elongatio 99.2 2.9E-11 9.8E-16 107.0 8.7 81 184-267 4-97 (97)
207 2kat_A Uncharacterized protein 99.2 9.5E-11 3.3E-15 104.1 11.3 84 462-545 2-86 (115)
208 1elr_A TPR2A-domain of HOP; HO 99.2 1.2E-10 4.1E-15 103.2 11.7 107 574-680 7-121 (131)
209 3ro3_A PINS homolog, G-protein 99.2 2.7E-10 9.2E-15 104.0 13.6 140 381-544 7-161 (164)
210 2kat_A Uncharacterized protein 99.1 1.6E-10 5.3E-15 102.7 10.1 84 589-672 4-87 (115)
211 3ly7_A Transcriptional activat 99.1 1.7E-09 5.9E-14 117.1 19.1 157 515-686 199-358 (372)
212 3ma5_A Tetratricopeptide repea 99.1 2.9E-10 9.8E-15 99.5 8.0 73 599-671 2-74 (100)
213 4b4t_Q 26S proteasome regulato 99.0 8.1E-10 2.8E-14 119.8 13.0 172 480-669 5-206 (434)
214 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 4.9E-10 1.7E-14 105.9 9.7 100 184-292 4-130 (141)
215 2l6j_A TPR repeat-containing p 99.0 8.1E-10 2.8E-14 96.0 10.5 83 603-685 3-92 (111)
216 2l6j_A TPR repeat-containing p 99.0 1.4E-10 4.8E-15 100.9 5.1 59 605-663 39-103 (111)
217 1na3_A Designed protein CTPR2; 99.0 1E-09 3.4E-14 92.0 9.8 82 601-682 6-88 (91)
218 3ma5_A Tetratricopeptide repea 99.0 7.7E-10 2.6E-14 96.7 7.9 72 474-545 2-74 (100)
219 3mv2_B Coatomer subunit epsilo 99.0 4.6E-09 1.6E-13 111.7 14.5 203 402-661 85-306 (310)
220 2p1m_A SKP1-like protein 1A; F 99.0 2.7E-10 9.1E-15 110.0 4.0 107 184-297 6-142 (160)
221 2kc7_A BFR218_protein; tetratr 98.9 1.6E-09 5.4E-14 93.1 5.6 87 449-546 7-95 (99)
222 3u64_A Protein TP_0956; tetrat 98.9 5.5E-08 1.9E-12 101.7 17.5 82 589-670 182-272 (301)
223 1na3_A Designed protein CTPR2; 98.8 2.5E-08 8.5E-13 83.3 12.1 48 605-652 44-91 (91)
224 3ly7_A Transcriptional activat 98.8 4E-08 1.4E-12 106.4 16.7 144 383-546 196-344 (372)
225 2kc7_A BFR218_protein; tetratr 98.8 1.3E-08 4.5E-13 87.3 8.5 69 607-675 3-73 (99)
226 4e6h_A MRNA 3'-END-processing 98.8 4.8E-07 1.7E-11 106.1 23.3 225 435-682 329-587 (679)
227 4e6h_A MRNA 3'-END-processing 98.7 6.6E-07 2.2E-11 105.0 23.0 228 464-707 328-574 (679)
228 1klx_A Cysteine rich protein B 98.7 2.8E-07 9.5E-12 85.6 14.1 113 397-544 9-129 (138)
229 2eqx_A Kelch repeat and BTB do 98.6 1.4E-08 4.8E-13 90.9 3.2 85 280-373 6-98 (105)
230 3bee_A Putative YFRE protein; 98.6 1.7E-07 5.9E-12 81.8 10.0 72 599-670 1-75 (93)
231 3n71_A Histone lysine methyltr 98.6 2.7E-07 9.2E-12 104.3 14.2 128 392-542 318-465 (490)
232 1klx_A Cysteine rich protein B 98.5 7E-07 2.4E-11 82.9 13.1 82 589-674 44-133 (138)
233 3n71_A Histone lysine methyltr 98.4 6.4E-07 2.2E-11 101.2 11.8 131 485-665 315-462 (490)
234 1pc2_A Mitochondria fission pr 98.4 5.3E-07 1.8E-11 85.8 9.4 89 591-679 19-113 (152)
235 1hv2_A Elongin C, ELC1; protei 98.4 6.6E-07 2.3E-11 79.2 8.6 80 183-267 5-99 (99)
236 2v5f_A Prolyl 4-hydroxylase su 98.4 1.2E-06 4.1E-11 77.4 10.2 78 603-680 4-89 (104)
237 3u64_A Protein TP_0956; tetrat 98.4 7.6E-06 2.6E-10 85.6 17.6 84 462-545 180-273 (301)
238 2uy1_A Cleavage stimulation fa 98.4 0.00017 5.9E-09 81.3 29.6 344 340-703 11-412 (493)
239 3v7d_A Suppressor of kinetocho 98.3 2.8E-06 9.5E-11 82.5 11.5 97 183-283 8-134 (169)
240 1pc2_A Mitochondria fission pr 98.3 4.8E-06 1.6E-10 79.2 12.3 98 462-565 15-118 (152)
241 2fnj_C Transcription elongatio 98.3 7.1E-07 2.4E-11 78.5 6.1 80 184-267 3-96 (96)
242 3bee_A Putative YFRE protein; 98.3 2.8E-06 9.7E-11 74.0 9.6 71 475-545 2-76 (93)
243 3drz_A BTB/POZ domain-containi 98.1 1.1E-05 3.7E-10 72.3 10.0 94 183-280 7-106 (107)
244 2uy1_A Cleavage stimulation fa 98.1 0.00015 5.2E-09 81.7 21.4 78 397-474 28-118 (493)
245 3qww_A SET and MYND domain-con 98.0 1.4E-05 5E-10 88.7 9.4 88 458-545 311-420 (433)
246 3qww_A SET and MYND domain-con 97.9 1.6E-05 5.6E-10 88.3 9.3 79 589-667 317-411 (433)
247 2v5f_A Prolyl 4-hydroxylase su 97.9 8.1E-05 2.8E-09 65.4 10.9 74 384-457 6-88 (104)
248 3qwp_A SET and MYND domain-con 97.8 7.6E-05 2.6E-09 82.8 12.1 92 394-508 298-400 (429)
249 1vcb_B Protein (elongin C); tu 97.8 3.2E-05 1.1E-09 69.8 7.0 81 183-267 18-112 (112)
250 3qwp_A SET and MYND domain-con 97.7 9.6E-05 3.3E-09 81.9 10.9 85 462-546 304-410 (429)
251 1nzn_A CGI-135 protein, fissio 97.7 0.00011 3.8E-09 67.6 8.7 89 592-680 23-117 (126)
252 1nzn_A CGI-135 protein, fissio 97.4 0.0015 5E-08 60.1 12.3 97 462-564 18-120 (126)
253 3drx_A BTB/POZ domain-containi 97.1 0.001 3.5E-08 65.8 8.2 93 184-280 14-112 (202)
254 1y8m_A FIS1; mitochondria, unk 96.6 0.021 7.2E-07 53.4 12.3 80 601-680 36-120 (144)
255 4g26_A Pentatricopeptide repea 96.5 0.12 4.1E-06 58.1 20.5 153 391-545 34-210 (501)
256 4g26_A Pentatricopeptide repea 96.5 0.25 8.4E-06 55.5 23.0 84 590-674 125-213 (501)
257 3o48_A Mitochondria fission 1 96.3 0.019 6.5E-07 53.0 9.6 79 601-679 37-120 (134)
258 1qsa_A Protein (soluble lytic 95.9 3.3 0.00011 47.7 28.2 282 385-674 8-354 (618)
259 1y8m_A FIS1; mitochondria, unk 95.8 0.19 6.4E-06 47.0 14.1 84 475-564 35-123 (144)
260 3o48_A Mitochondria fission 1 95.7 0.083 2.9E-06 48.7 11.2 83 478-566 39-126 (134)
261 1s1g_A Potassium voltage-gated 95.6 0.013 4.5E-07 53.6 5.5 86 183-275 14-105 (124)
262 3kvt_A Potassium channel prote 95.5 0.01 3.5E-07 53.6 4.4 84 184-271 7-93 (115)
263 2ff4_A Probable regulatory pro 95.1 0.87 3E-05 49.2 19.1 66 608-673 175-247 (388)
264 1nn7_A Potassium channel KV4.2 95.1 0.0088 3E-07 53.1 2.4 86 184-276 2-93 (105)
265 4h7y_A Dual specificity protei 94.8 0.36 1.2E-05 45.5 12.7 105 409-513 7-128 (161)
266 2nz0_B Potassium voltage-gated 94.8 0.019 6.4E-07 53.7 3.9 86 183-275 36-127 (140)
267 3ffl_A Anaphase-promoting comp 94.8 0.087 3E-06 50.5 8.5 77 462-538 37-148 (167)
268 3ffl_A Anaphase-promoting comp 94.6 0.16 5.6E-06 48.6 10.0 111 387-505 24-148 (167)
269 1t1d_A Protein (potassium chan 94.3 0.027 9.4E-07 49.5 3.6 84 184-271 3-90 (100)
270 2ff4_A Probable regulatory pro 93.9 0.62 2.1E-05 50.4 14.3 60 481-540 173-233 (388)
271 4h7y_A Dual specificity protei 93.9 0.61 2.1E-05 44.0 11.9 53 589-641 79-131 (161)
272 3mkq_A Coatomer beta'-subunit; 93.6 3.2 0.00011 47.9 20.6 47 488-538 661-707 (814)
273 4gns_B Protein CSD3, chitin bi 93.6 0.23 7.8E-06 58.6 10.6 59 603-661 336-394 (754)
274 1zbp_A Hypothetical protein VP 93.4 1.1 3.7E-05 46.2 13.9 129 487-638 5-134 (273)
275 1qsa_A Protein (soluble lytic 92.2 3.1 0.00011 47.9 17.3 237 422-691 221-486 (618)
276 3txn_A 26S proteasome regulato 91.5 8.3 0.00028 41.8 18.9 89 483-571 103-200 (394)
277 3kae_A CDC27, possible protein 91.5 2.8 9.5E-05 40.3 12.9 114 474-637 28-147 (242)
278 1ya0_A SMG-7 transcript varian 91.2 0.77 2.6E-05 51.6 10.5 63 610-672 158-220 (497)
279 4gns_B Protein CSD3, chitin bi 89.0 1.6 5.3E-05 51.5 11.0 47 459-505 351-397 (754)
280 3mkq_A Coatomer beta'-subunit; 84.9 11 0.00038 43.3 15.3 110 393-534 662-771 (814)
281 1zbp_A Hypothetical protein VP 84.6 2.1 7.3E-05 44.0 7.9 60 613-672 6-65 (273)
282 4fhn_B Nucleoporin NUP120; pro 81.5 20 0.00068 44.2 16.3 134 393-536 822-962 (1139)
283 1ya0_A SMG-7 transcript varian 81.3 3.9 0.00013 45.8 9.1 60 462-521 169-229 (497)
284 3kae_A CDC27, possible protein 79.1 47 0.0016 32.0 16.7 53 388-443 38-90 (242)
285 4b4t_S RPN3, 26S proteasome re 76.5 2.1 7.1E-05 48.1 4.9 37 604-640 270-306 (523)
286 4b4t_R RPN7, 26S proteasome re 74.0 15 0.00051 40.0 10.9 69 474-542 126-198 (429)
287 4fhn_B Nucleoporin NUP120; pro 73.6 18 0.00063 44.4 12.8 139 484-662 817-962 (1139)
288 3txn_A 26S proteasome regulato 73.6 29 0.00098 37.6 12.9 58 609-666 104-167 (394)
289 3spa_A Mtrpol, DNA-directed RN 68.6 36 0.0012 41.5 13.1 103 418-546 130-237 (1134)
290 2eqx_A Kelch repeat and BTB do 67.6 4.5 0.00015 35.2 4.0 33 250-282 8-40 (105)
291 2r9r_B Paddle chimera voltage 62.4 7.2 0.00025 43.8 5.4 82 183-271 53-141 (514)
292 3mkq_B Coatomer subunit alpha; 61.7 57 0.002 31.2 10.8 50 487-540 13-62 (177)
293 4b4t_S RPN3, 26S proteasome re 60.5 1.2E+02 0.0042 33.9 14.8 65 384-448 232-303 (523)
294 4b4t_R RPN7, 26S proteasome re 56.4 30 0.001 37.5 9.0 99 415-540 131-236 (429)
295 2w2u_A Hypothetical P60 katani 55.5 57 0.0019 27.1 8.5 32 380-411 16-47 (83)
296 2w2u_A Hypothetical P60 katani 55.4 17 0.00058 30.4 5.2 34 398-444 15-48 (83)
297 2v6y_A AAA family ATPase, P60 54.8 56 0.0019 27.1 8.3 24 387-410 15-38 (83)
298 2crb_A Nuclear receptor bindin 51.8 15 0.00051 31.5 4.2 29 479-507 15-43 (97)
299 2crb_A Nuclear receptor bindin 49.9 18 0.00063 30.9 4.5 29 604-632 15-43 (97)
300 3re2_A Predicted protein; meni 47.9 27 0.00092 37.3 6.3 43 464-506 276-323 (472)
301 2v6y_A AAA family ATPase, P60 47.7 28 0.00094 29.0 5.3 33 399-444 8-40 (83)
302 3u84_A Menin; MLL, JUND, ledgf 47.0 27 0.00094 37.8 6.3 43 464-506 298-345 (550)
303 3htm_A Speckle-type POZ protei 46.8 13 0.00043 34.5 3.4 34 250-283 132-165 (172)
304 4a1g_A Mitotic checkpoint seri 46.3 66 0.0023 30.0 8.2 97 346-445 28-131 (152)
305 3spa_A Mtrpol, DNA-directed RN 46.2 1.5E+02 0.005 36.3 13.1 70 480-549 128-204 (1134)
306 3mkq_B Coatomer subunit alpha; 41.4 1.4E+02 0.0049 28.4 10.0 42 395-439 17-58 (177)
307 4b4t_P 26S proteasome regulato 40.0 1.7E+02 0.0057 31.8 11.7 133 349-507 99-246 (445)
308 2v6x_A Vacuolar protein sortin 39.3 33 0.0011 28.4 4.6 33 380-412 10-42 (85)
309 2cpt_A SKD1 protein, vacuolar 38.7 35 0.0012 30.4 4.9 33 380-412 15-47 (117)
310 1wfd_A Hypothetical protein 15 38.5 48 0.0017 28.1 5.5 10 429-438 29-38 (93)
311 3ax2_A Mitochondrial import re 38.3 36 0.0012 27.8 4.4 32 483-514 21-52 (73)
312 3ltm_A Alpha-REP4; protein eng 37.2 2.5E+02 0.0087 25.9 11.8 12 462-473 18-29 (211)
313 3hqi_A Speckle-type POZ protei 36.2 21 0.00071 36.7 3.4 34 250-283 272-305 (312)
314 1wfd_A Hypothetical protein 15 35.9 44 0.0015 28.4 4.8 33 380-412 12-44 (93)
315 2vkp_A BTB/POZ domain-containi 32.9 32 0.0011 29.1 3.6 32 284-315 78-109 (109)
316 4ady_A RPN2, 26S proteasome re 31.2 7.6E+02 0.026 29.7 17.8 263 417-712 378-666 (963)
317 3esl_A Checkpoint serine/threo 31.2 1.5E+02 0.005 29.0 8.3 99 599-701 75-185 (202)
318 3re2_A Predicted protein; meni 27.0 72 0.0025 34.1 5.4 42 401-442 275-323 (472)
319 2ijq_A Hypothetical protein; s 26.6 1.7E+02 0.0058 27.5 7.6 60 608-667 36-104 (161)
320 4gq4_A Menin; tumor suppressor 25.8 1.1E+02 0.0036 33.4 6.6 42 464-505 283-329 (489)
321 4gq4_A Menin; tumor suppressor 25.6 76 0.0026 34.5 5.4 43 401-443 282-331 (489)
322 1om2_A Protein (mitochondrial 25.5 60 0.0021 27.9 3.8 33 483-515 24-56 (95)
323 4a1g_A Mitotic checkpoint seri 24.2 3E+02 0.01 25.4 8.8 52 621-672 82-135 (152)
324 2ijq_A Hypothetical protein; s 24.0 4E+02 0.014 24.9 9.6 58 483-540 36-103 (161)
325 4b4t_P 26S proteasome regulato 23.8 6.9E+02 0.024 26.7 13.9 99 482-580 140-247 (445)
326 3ubw_A 14-3-3E, 14-3-3 protein 23.6 5.8E+02 0.02 25.7 21.3 190 480-702 32-255 (261)
327 4a5x_A MITD1, MIT domain-conta 23.5 89 0.0031 26.1 4.5 26 387-412 20-45 (86)
328 3u84_A Menin; MLL, JUND, ledgf 23.2 2E+02 0.0068 31.3 8.0 57 384-441 278-344 (550)
329 3t5x_A PCI domain-containing p 22.7 1.1E+02 0.0038 29.6 5.7 33 384-416 15-47 (203)
330 3uzd_A 14-3-3 protein gamma; s 21.5 6.2E+02 0.021 25.3 21.3 189 481-702 6-230 (248)
331 4gq2_M Nucleoporin NUP120; bet 21.2 9E+02 0.031 28.7 14.5 115 485-639 816-932 (950)
332 4aez_C MAD3, mitotic spindle c 21.1 2.5E+02 0.0085 27.8 7.9 98 345-445 73-180 (223)
333 2wvi_A Mitotic checkpoint seri 21.1 2E+02 0.007 27.0 7.0 95 345-445 20-126 (164)
334 2z8h_A Transcription regulator 20.8 46 0.0016 29.7 2.4 34 284-317 102-135 (138)
335 4aez_C MAD3, mitotic spindle c 20.2 6.2E+02 0.021 24.9 11.9 78 590-668 97-180 (223)
336 3j0g_M E3 protein; alphavirus, 20.0 45 0.0016 25.9 1.7 14 695-708 44-57 (59)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-32 Score=296.72 Aligned_cols=320 Identities=14% Similarity=0.088 Sum_probs=223.8
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~ 438 (721)
+.+....+++.+++..+. ...+++.+|.++...|++++|+..|++|++++| ..++.++|.++...|++++|+..|
T Consensus 48 ~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 124 (388)
T 1w3b_A 48 RLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444555666665554332 255677888888888888888888888887744 345777888888888888888888
Q ss_pred HHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH
Q 004984 439 NSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE 513 (721)
Q Consensus 439 ~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~ 513 (721)
.++++.+|+...++..+|. .++.++|+..|+++++++|+++.+|.++|.++...|++++|+..|+++++++|+ ..
T Consensus 125 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 204 (388)
T 1w3b_A 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204 (388)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 8888888887777776654 256688888888888888888888888888888888888888888888888886 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh-hhHHHHHHHHHHHHhhhhhhH--------HHHHHhhhhccccc
Q 004984 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE-GRVAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSV 584 (721)
Q Consensus 514 ~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~-~~~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~ 584 (721)
.+..+|.++...|++++|+..|+++++++|++.... ..+.+....+..+...+.+++ .++|..+...+...
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 777788888888888888888888888888774322 122222222222222222221 22334444444444
Q ss_pred cccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 585 DDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (721)
Q Consensus 585 dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~ 663 (721)
+++. |+..++++++++|.++.+++++|.++..+|++++|+..++++++++|+++.+++++|+++..+|++++|+..|++
T Consensus 285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444 566777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcCCCHH-HHHHHHHHhhc
Q 004984 664 SIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 664 Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
+++++|++. +|++.|.++..
T Consensus 365 a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 365 AIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHH
T ss_pred HHhhCCCCHHHHHhHHHHHHH
Confidence 777777776 77777776643
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.2e-31 Score=283.55 Aligned_cols=333 Identities=13% Similarity=0.044 Sum_probs=281.3
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~ 438 (721)
+.+.+...++.+.+..++. ..++..+|.++...|++++|+..+++|++.+| ..++..+|.++...|++++|+..|
T Consensus 14 ~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPDN---TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445566666666554433 45678899999999999999999999999865 457889999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH
Q 004984 439 NSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE 513 (721)
Q Consensus 439 ~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~ 513 (721)
+++++..|+...+|.++|. .++.++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++.+|+ +.
T Consensus 91 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (388)
T 1w3b_A 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999888888764 366699999999999999999999999999999999999999999999999997 78
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH---------------HHHHHhhh
Q 004984 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI---------------ADCWLQLY 578 (721)
Q Consensus 514 ~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~---------------A~~~~~l~ 578 (721)
.+.++|.++...|++++|+..|+++++++|++... ...++.+.....++++ +.+|..+.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 88999999999999999999999999999998542 2233333333333322 34455555
Q ss_pred hccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 004984 579 DRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 657 (721)
Q Consensus 579 ~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA 657 (721)
......+++. |+..++++++++|.++.+|+++|.++.++|++++|+..|+++++++|++++++.++|.++..+|++++|
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 5555566666 888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCC
Q 004984 658 LRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (721)
Q Consensus 658 l~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (721)
+..|++++++.|++. +++..|.++...+- -..-+..+++|++.-.
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGK----LQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTC----CHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCC
Confidence 999999999999877 99999999887652 3456777888887533
No 3
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.97 E-value=1.7e-31 Score=277.45 Aligned_cols=200 Identities=16% Similarity=0.206 Sum_probs=165.0
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC--cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~--Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~ 252 (721)
+..++.+|||+|+|||++|+|||.|||++|+||++||++++. |+...+|+|+ ++++++|+.+++|+|||++. ++.
T Consensus 25 l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~--~v~~~~f~~ll~~~Yt~~~~-i~~ 101 (256)
T 3hve_A 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNE 101 (256)
T ss_dssp CCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECS--SCCHHHHHHHHHHHHHSCCC-CC-
T ss_pred HHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeC--CCCHHHHHHHHhhccCCCCc-ccH
Confidence 567889999999999999999999999999999999999988 6778899999 49999999999999999999 999
Q ss_pred HHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHH
Q 004984 253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERV 324 (721)
Q Consensus 253 ~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v 324 (721)
+++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..++++.|...|.+++.+|+.. .|+.+.+
T Consensus 102 ~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l 180 (256)
T 3hve_A 102 DTIQDVVQAADLLLLTDLKTLCCEFLEGCIA-AENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKL 180 (256)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC-SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHH
T ss_pred hHHHHHHHHHHHHChHHHHHHHHHHHHhhCC-HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHH
Confidence 9999999999999999999999999999995 799999999999999999999999999988864 7788899
Q ss_pred HHHhccccccchhhhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh---hHHHHHHH
Q 004984 325 VEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQRLL 384 (721)
Q Consensus 325 ~~ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~~l 384 (721)
.++++++++. |..|..++.++++|+.++...|.+++..||+. +|++ +.++.+.+
T Consensus 181 ~~lL~~d~L~-----v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~-VRf~~l~~~~l~~~v 237 (256)
T 3hve_A 181 KEVISLEKLN-----VGNERYVFEAVIRWIAHDTEIRKVHMKDVMSA-LWVSGLDSSYLREQM 237 (256)
T ss_dssp HHHHHCC------------CTTHHHHTTTCCC--CCSTTTHHHHHHH-HHHHTTCC-CHHHHH
T ss_pred HHHHccCCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh-CCCCCCCHHHHHHHH
Confidence 9999999985 78889999999999999998899999999988 5544 55555443
No 4
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=6.7e-28 Score=252.57 Aligned_cols=303 Identities=12% Similarity=0.002 Sum_probs=254.8
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKL 438 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~ 438 (721)
+.+.+...+++++...+.. ..+++.+|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..|
T Consensus 18 ~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 94 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF 94 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHH
Confidence 5667778888877655433 5688999999999999999999999999984 4567889999999999999999999
Q ss_pred HHHHhcCC---CcHHHHHHHh----------------hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 004984 439 NSVISSVT---PLGWMYQERS----------------LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL 499 (721)
Q Consensus 439 ~~aI~~~~---~~~~ay~~rg----------------~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl 499 (721)
.++++..| +...++...+ ..++.++|+..|+++++.+|+++.++..+|.++..+|++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999 7666665542 1356699999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (721)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (721)
..++++++++|+ +..+..+|.++..+|++++|+..|+++++++|++.. +......+.........+.++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~~--- 245 (359)
T 3ieg_A 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR------CFAHYKQVKKLNKLIESAEELI--- 245 (359)
T ss_dssp HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH------HHHHHHHHHHHHHHHHHHHHHH---
Confidence 999999999996 888889999999999999999999999999999844 2222222222222223332222
Q ss_pred hccccccccc-hHHHHHHHHHhCCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984 579 DRWSSVDDIG-SLSVIYQMLESDAPKGV----LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (721)
Q Consensus 579 ~~~~~~dd~~-al~~~~qaL~l~P~~~~----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~ 653 (721)
..+++. |+..++++++.+|.++. ++.++|.++..+|++++|+..++++++++|+++++++++|.+++.+|+
T Consensus 246 ----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 246 ----RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp ----HTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ----HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 123333 58899999999999984 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 004984 654 CEEGLRKAEESIQMKRSFE-AFFLKAY 679 (721)
Q Consensus 654 ~deAl~~ye~Ai~i~~~~~-a~~~~~~ 679 (721)
+++|+..|++|++++|++. ++...+-
T Consensus 322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 9999999999999999977 5554443
No 5
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-28 Score=255.11 Aligned_cols=276 Identities=10% Similarity=-0.003 Sum_probs=250.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----
Q 004984 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---- 458 (721)
Q Consensus 385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~---- 458 (721)
.+..+|..+...|++++|+..|+++++.++ ..++..++.++...|++++|+..+.++++.+|+.+.++..+|.+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 456788888999999999999999999854 45677789999999999999999999999999999999888753
Q ss_pred C-ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 459 C-EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 459 ~-~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
+ ..++|+..|++|++++|+++.+|..+|.++..+|++++|+..|++++++.|+ ...+..+|.++..+|++++|+..|+
T Consensus 104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5 6799999999999999999999999999999999999999999999999996 6778889999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC---------CCChhHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD---------APKGVLY 607 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~---------P~~~~~~ 607 (721)
++++++|++. .+...++.+.....++++| +..+++++++. |..+.++
T Consensus 184 ~al~~~~~~~------~~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 184 QALSIAPEDP------FVMHEVGVVAFQNGEWKTA------------------EKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHHTTCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHHhCCCCh------HHHHHHHHHHHHcccHHHH------------------HHHHHHHHHHhhhccccccccHHHHHH
Confidence 9999999983 3455555555566666666 78899999987 8888999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 004984 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS 684 (721)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~ 684 (721)
+++|.++..+|++++|+..++++++++|++++++.++|++++.+|++++|+..|+++++++|++. ++...|.++.-.
T Consensus 240 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887 999999888533
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=8.1e-28 Score=262.72 Aligned_cols=304 Identities=12% Similarity=0.001 Sum_probs=255.8
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKL 438 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~ 438 (721)
+.+.+..+++++++..+. ...+++.+|.++...|++++|+..|+++++.+ ...++..+|.++..+|++++|+..|
T Consensus 41 ~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 117 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 566777888887765443 36788999999999999999999999999985 4557888999999999999999999
Q ss_pred HHHHhcCCCcH---HHHHHH------------h----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 004984 439 NSVISSVTPLG---WMYQER------------S----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL 499 (721)
Q Consensus 439 ~~aI~~~~~~~---~ay~~r------------g----~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl 499 (721)
.++++..|+.. .++... | ..++.++|+..|+++++++|+++.++.++|.++...|++++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (450)
T 2y4t_A 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 197 (450)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 99999999876 554322 1 1245599999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (721)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (721)
..|+++++.+|+ +..+..+|.++...|++++|+..|+++++++|++.... .....+.........+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~~~~~~----- 266 (450)
T 2y4t_A 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF------AHYKQVKKLNKLIESAEE----- 266 (450)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH------HHHHHHHHHHHHHHHHHH-----
Confidence 999999999996 88889999999999999999999999999999985422 222111111122222222
Q ss_pred hccccccccc-hHHHHHHHHHhCCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984 579 DRWSSVDDIG-SLSVIYQMLESDAPKGV----LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (721)
Q Consensus 579 ~~~~~~dd~~-al~~~~qaL~l~P~~~~----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~ 653 (721)
....+++. |+..++++++++|.++. ++.++|.++.++|++++|+..++++++++|++++++.++|.++..+|+
T Consensus 267 --~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 267 --LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp --HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred --HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 22223333 58899999999999954 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 004984 654 CEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (721)
Q Consensus 654 ~deAl~~ye~Ai~i~~~~~-a~~~~~~~ 680 (721)
+++|+..|+++++++|+.. ++.+.|.+
T Consensus 345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999987 88888843
No 7
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.97 E-value=2.6e-31 Score=279.67 Aligned_cols=200 Identities=19% Similarity=0.247 Sum_probs=173.5
Q ss_pred ccCCCCCccEEEEEc---CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCC----CCCHHHHHHHhhhhccCCC
Q 004984 175 MSGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSEN----NISPSGLRIISDFSVTGSL 247 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~---~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~----~is~~~~~~lL~f~Ytg~l 247 (721)
+..++.+|||+|+|| |++|+|||.|||++|+||++||+++|+|+.+.+|+|++. ++++++|+.+++|+|||++
T Consensus 26 l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~ 105 (279)
T 3i3n_A 26 QRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI 105 (279)
T ss_dssp HHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEE
T ss_pred HHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCc
Confidence 446788999999998 999999999999999999999999999999999999821 5999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CC
Q 004984 248 NGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CL 319 (721)
Q Consensus 248 ~~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L 319 (721)
. ++.+++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..++++.|...|.+++.+|+.. .|
T Consensus 106 ~-i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L 183 (279)
T 3i3n_A 106 R-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH-LSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTL 183 (279)
T ss_dssp E-EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGS
T ss_pred c-cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC-cchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcC
Confidence 9 9999999999999999999999999999999995 799999999999999999999999999888754 67
Q ss_pred ChHHHHHHhccccccchhhhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh---hHHHHH
Q 004984 320 NDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQR 382 (721)
Q Consensus 320 ~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~ 382 (721)
+.+.+.++++++++. |..|..++.++++|+.++...|..++.+||+. +|++ +.++.+
T Consensus 184 ~~~~l~~lL~~d~L~-----v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~-VRf~l~~~~~L~~ 243 (279)
T 3i3n_A 184 PFHLIRDWLSDLEIT-----VDSEEVLFETVLKWVQRNAEERERYFEELFKL-LRLSQMKPTYLTR 243 (279)
T ss_dssp CHHHHHHHHTCSSCC-----CSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTT-SCGGGSCHHHHHH
T ss_pred CHHHHHHHhcCcCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh-cCCCCCCHHHHHH
Confidence 889999999999985 88899999999999999988888899999987 5544 545443
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=3.1e-27 Score=247.52 Aligned_cols=297 Identities=18% Similarity=0.094 Sum_probs=260.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc-
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY- 458 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~- 458 (721)
+..++..+|..+...|++++|+..|+++++.+ ...++..+|.++...|++++|+..+.++++.+|+.+.++..+|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 35677899999999999999999999999985 456788999999999999999999999999999988888888753
Q ss_pred ---CChhHHHHHHHHHHhcCC---CChHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 004984 459 ---CEGDKRWEDLDKATALDP---TLSYPYMYR------------ASSLMTKQNVEAALAEINRILGFKLA-LECLELRF 519 (721)
Q Consensus 459 ---~~~~eAl~d~~kAieLdP---~~~~ay~~r------------g~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~ 519 (721)
++.++|+..|+++++++| ++..++..+ |.++...|++++|+..|+++++.+|+ +..+..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 677999999999999999 999999888 79999999999999999999999996 78888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 004984 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (721)
Q Consensus 520 ~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l 599 (721)
.++..+|++++|+..|+++++++|++. .+...++.+.....++++| +..++++++.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A------------------~~~~~~a~~~ 217 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNT------EAFYKISTLYYQLGDHELS------------------LSEVRECLKL 217 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhh
Confidence 999999999999999999999999984 3444555555555566666 7899999999
Q ss_pred CCCChhHHH------------HHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 600 DAPKGVLYF------------RQSLLLLRLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEE 663 (721)
Q Consensus 600 ~P~~~~~~~------------~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~----ea~~~~G~~Ly~~G~~deAl~~ye~ 663 (721)
+|.++.++. .+|.++.+.|++++|+..++++++..|+++ .++.++|.++..+|++++|+..|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 218 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999765 458899999999999999999999999988 4577899999999999999999999
Q ss_pred HHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCC
Q 004984 664 SIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (721)
Q Consensus 664 Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (721)
+++++|+.. +++..|.++...+ --...+..++.|++.-.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~g----~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 298 VLQMEPDNVNALKDRAEAYLIEE----MYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTCT
T ss_pred HHHhCcccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCC
Confidence 999999666 9999999987654 34556777777776533
No 9
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=8.5e-29 Score=272.11 Aligned_cols=251 Identities=10% Similarity=-0.050 Sum_probs=193.3
Q ss_pred chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCC-hhHHHHHHHHHHhcCCCChHHHHHHHHH
Q 004984 414 HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCE-GDKRWEDLDKATALDPTLSYPYMYRASS 488 (721)
Q Consensus 414 ~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~-~~eAl~d~~kAieLdP~~~~ay~~rg~~ 488 (721)
+..++.++|.++..+|++++|++.|+++|+++|++..+|.++|. .++ .++|+.+|++||+++|+++.+|++||.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666654 244 6777888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh-hh
Q 004984 489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH-ID 566 (721)
Q Consensus 489 l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~-~~ 566 (721)
+..+|++++|+..|++||+++|+ +.+|++||+++..+|++++|+.+|+++++++|++.. +...++.+... .+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~------a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS------VWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTC
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcC
Confidence 88888888888888888888885 777888888888888888888888888888888733 33333333222 22
Q ss_pred hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChhHHHHH
Q 004984 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN--CPEAAMRSLQLARQHAASDHERLVYE 644 (721)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg--~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (721)
..++|. ...++..++++|+++|+++.+|+++|.++..+| ++++|+..++++ +.+|++..++..+
T Consensus 250 ~~~eA~-------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~L 315 (382)
T 2h6f_A 250 YNDRAV-------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFL 315 (382)
T ss_dssp SCSHHH-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHH
T ss_pred cchHHH-------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHH
Confidence 223331 001257899999999999999999999999998 689999999998 9999999999999
Q ss_pred HHHHHhcC---------CHHHHHHHHHHH-HhcCCCHH-HHHHHHHHhhcc
Q 004984 645 GWILYDTS---------HCEEGLRKAEES-IQMKRSFE-AFFLKAYALADS 684 (721)
Q Consensus 645 G~~Ly~~G---------~~deAl~~ye~A-i~i~~~~~-a~~~~~~~~~~~ 684 (721)
|+++..+| .+++|+..|+++ ++++|... .|..++-+|...
T Consensus 316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 316 VDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99999985 369999999999 99999998 788788777654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=6.4e-27 Score=255.62 Aligned_cols=295 Identities=18% Similarity=0.092 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh--
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~-- 457 (721)
+..+++.+|..+...|++++|+..|+++++.. ...++..+|.++...|++++|+..|.++++..|+...++..+|.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 46778899999999999999999999999884 45678889999999999999999999999999999988888875
Q ss_pred --cCChhHHHHHHHHHHhcCCCCh---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 004984 458 --YCEGDKRWEDLDKATALDPTLS---YPYMYR------------ASSLMTKQNVEAALAEINRILGFKLA-LECLELRF 519 (721)
Q Consensus 458 --~~~~~eAl~d~~kAieLdP~~~---~ay~~r------------g~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~ 519 (721)
.++.++|+..|+++++++|++. .++..+ |.++...|++++|+..|+++++++|+ +..+..+|
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3677999999999999999998 776655 77799999999999999999999996 78888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 004984 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (721)
Q Consensus 520 ~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l 599 (721)
.++..+|++++|+..|+++++++|++.. +...++.+.....++++| +..+++++++
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~ 240 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLKNDNTE------AFYKISTLYYQLGDHELS------------------LSEVRECLKL 240 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHCSCHH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHh
Confidence 9999999999999999999999999843 444444444455555555 8899999999
Q ss_pred CCCChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 600 DAPKGVLYFRQ------------SLLLLRLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEE 663 (721)
Q Consensus 600 ~P~~~~~~~~~------------g~~L~~lg~~eeAl~~~~~Al~l~P~~~----ea~~~~G~~Ly~~G~~deAl~~ye~ 663 (721)
+|.++..+... |.++...|++++|+..|+++++++|+++ +++.++|.++..+|++++|+..+++
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998776 9999999999999999999999999985 4899999999999999999999999
Q ss_pred HHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 004984 664 SIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (721)
Q Consensus 664 Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (721)
++++.|+.. +|+..|.++...+ --..-+..++.|++.
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEE----MYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTT
T ss_pred HHHhCcccHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHh
Confidence 999999765 9999999997654 234456666666654
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.4e-26 Score=262.74 Aligned_cols=293 Identities=10% Similarity=-0.001 Sum_probs=258.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 004984 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSV 441 (721)
Q Consensus 364 ~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~a 441 (721)
....+++++.+.+ .+...++.+|..+...|++++|+..|+++++.+ +..++..++.++...|++++|+..+.++
T Consensus 290 ~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 290 RAEDYLSSINGLE----KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHTSTTGG----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCC----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455666655543 346788899999999999999999999999875 4567888999999999999999999999
Q ss_pred HhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH
Q 004984 442 ISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE 516 (721)
Q Consensus 442 I~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~ 516 (721)
++..|+...++..+|. .++.++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++..|+ ...+.
T Consensus 366 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 366 VDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp HHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred HhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 9999998888877754 367799999999999999999999999999999999999999999999999995 78888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (721)
Q Consensus 517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa 596 (721)
.++.++...|++++|+..|+++++++|++.. +...++.+.....++++| +..++++
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~~ 501 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPL------LLNELGVVAFNKSDMQTA------------------INHFQNA 501 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHTTCHHHH------------------HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHhCCHHHH------------------HHHHHHH
Confidence 8999999999999999999999999999843 344444444555566666 7889999
Q ss_pred HHh------CCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 597 LES------DAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 597 L~l------~P~~-~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~ 669 (721)
+++ +|.+ +.+|+++|.++.++|++++|++.++++++++|+++.+++.+|.++...|++++|+..|+++++++|
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 998 6765 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHH-HHHHHHHHhhcc
Q 004984 670 SFE-AFFLKAYALADS 684 (721)
Q Consensus 670 ~~~-a~~~~~~~~~~~ 684 (721)
+.. ++++.|.+++.+
T Consensus 582 ~~~~~~~~l~~~~~~~ 597 (597)
T 2xpi_A 582 NEIMASDLLKRALEEN 597 (597)
T ss_dssp TCHHHHHHHHHTTC--
T ss_pred CChHHHHHHHHHHhcC
Confidence 987 999999888753
No 12
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-26 Score=254.85 Aligned_cols=319 Identities=10% Similarity=0.027 Sum_probs=246.1
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-------
Q 004984 347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAET------DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG------- 413 (721)
Q Consensus 347 ~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~------~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~------- 413 (721)
.+-.|.+|.+... +.+.+.+.+++++++... .....+++.++|.++..+|++++|+.+|++|+++.
T Consensus 53 ~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 4567888887754 677888888887765322 12235788999999999999999999999999872
Q ss_pred ---chhhHhhHHHHHHHh--CCHHHHHHHHHHHHhcCCCcHHHHHHHh-------hcCChhHHHHHHHHHHhcCCCChHH
Q 004984 414 ---HIYSIAGLARLGYIK--GHKLWAYEKLNSVISSVTPLGWMYQERS-------LYCEGDKRWEDLDKATALDPTLSYP 481 (721)
Q Consensus 414 ---~~~A~~~lg~~~~~~--G~~~~A~~~~~~aI~~~~~~~~ay~~rg-------~~~~~~eAl~d~~kAieLdP~~~~a 481 (721)
.+.++.++|.++... +++++|+..|.++++++|+++.++...+ .+++.++|+..|++|++++|+++.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 234556667666554 5799999999999999999887776654 4567799999999999999999999
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 004984 482 YMYRASSLMTK----QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (721)
Q Consensus 482 y~~rg~~l~~l----g~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~ 556 (721)
+.++|..+..+ |++++|+..|++++.++|+ +..+.++|.++...|++++|+..|+++++++|++...+...+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg--- 288 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG--- 288 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH---
Confidence 99999887665 5778999999999999996 788889999999999999999999999999999865333222
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (721)
Q Consensus 557 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (721)
.+.........+..+............+. |+..+.++++++|.++.+++++|.++..+|++++|+..|++|++++|
T Consensus 289 ---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 289 ---CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp ---HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred ---HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 22111111111111111111111112222 57899999999999999999999999999999999999999999999
Q ss_pred CChhH---HHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 636 SDHER---LVYEGW-ILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 636 ~~~ea---~~~~G~-~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
++.+. +++.|. .++.+|++++|+..|++|++++|...
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 87764 566775 46789999999999999999988754
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=2.3e-27 Score=251.67 Aligned_cols=271 Identities=12% Similarity=0.001 Sum_probs=228.0
Q ss_pred HHHhccchHHHHH-HHHHHHhccc------hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCC
Q 004984 392 VRLLRKEYDEAEH-LFEAAVNAGH------IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCE 460 (721)
Q Consensus 392 ~~~~~g~y~eA~~-~f~~AL~~~~------~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~ 460 (721)
.+...|+|++|+. .|++|+++.+ ..+++.+|.++...|++++|+..|+++++.+|+.+.++..+|. .++
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5667789999999 9999998843 3457889999999999999999999999999999999988875 367
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH----------------HHHHHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE----------------LRFCFFL 523 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~----------------~R~~~~~ 523 (721)
.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ...+. ..+.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 799999999999999999999999999999999999999999999999996 43332 345555
Q ss_pred hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC
Q 004984 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (721)
Q Consensus 524 ~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~ 603 (721)
..|++++|+..|+++++++|+... ..+...++.+.....++++| +..++++++++|.+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~~~~ 250 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSID----PDVQCGLGVLFNLSGEYDKA------------------VDCFTAALSVRPND 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCC----HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTC
T ss_pred hcccHHHHHHHHHHHHHhCcCccc----HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCC
Confidence 999999999999999999999311 23444455555555566665 88999999999999
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------------
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF------------ 671 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~------------ 671 (721)
+.+++++|.++..+|++++|+..|+++++++|+++.+++++|.+++.+|++++|+..|++++++.|+.
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHhhccC
Q 004984 672 EAFFLKAYALADSS 685 (721)
Q Consensus 672 ~a~~~~~~~~~~~~ 685 (721)
.+|+..|.++...+
T Consensus 331 ~~~~~l~~~~~~~g 344 (368)
T 1fch_A 331 NIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 59999998887654
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-26 Score=255.82 Aligned_cols=335 Identities=13% Similarity=-0.003 Sum_probs=248.0
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~ 438 (721)
+.+.+...+++++...+ +..+++.+|.++...|++++|+..|+++++.+| ..++..+|.++..+|++++|+..|
T Consensus 21 ~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp CHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45667777777776544 256778888888889999999999998888854 446778888888999999998888
Q ss_pred HHHHhcCCC-----------------------------------------------------------------------
Q 004984 439 NSVISSVTP----------------------------------------------------------------------- 447 (721)
Q Consensus 439 ~~aI~~~~~----------------------------------------------------------------------- 447 (721)
.+++...|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 888877652
Q ss_pred --------cHHHHHHHhh-------cCChhHHHHHHHHHHh-----c--C-------CCChHHHHHHHHHHHhcCCHHHH
Q 004984 448 --------LGWMYQERSL-------YCEGDKRWEDLDKATA-----L--D-------PTLSYPYMYRASSLMTKQNVEAA 498 (721)
Q Consensus 448 --------~~~ay~~rg~-------~~~~~eAl~d~~kAie-----L--d-------P~~~~ay~~rg~~l~~lg~~~eA 498 (721)
.+.++..+|. .++.++|+..|+++++ + + |+++.+|..+|.++...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 2555555544 3455888888888888 6 3 55577888888888888888888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh-hhHHHHHHHHHHHHhhhhhhH-------
Q 004984 499 LAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE-GRVAASQLHMLVREHIDNWTI------- 570 (721)
Q Consensus 499 l~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~-~~~~a~~~~~~l~~~~~~~~~------- 570 (721)
+..|+++++.+|+...+..+|.++...|++++|+..|+++++++|++.... ..+.+....+....+...+++
T Consensus 257 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 257 HEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 888888888888855566788888888888888888888888888874422 222222222222222222222
Q ss_pred -HHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh------HHH
Q 004984 571 -ADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLV 642 (721)
Q Consensus 571 -A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e------a~~ 642 (721)
..+|..+.......+++. |+..++++++.+|.++.+++++|.++..+|++++|+..++++++++|++.+ +++
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 234455555555556666 788888888888888888888888888888888888888888888888866 888
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984 643 YEGWILYD---TSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 643 ~~G~~Ly~---~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (721)
++|.+++. +|++++|+..|++++++.|+.. +++..|.++...+ --...+..++.|++
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE----DIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc----CHHHHHHHHHHHHH
Confidence 88888888 8888888888888888888776 8888888877554 23344555555554
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=1.3e-26 Score=245.80 Aligned_cols=260 Identities=13% Similarity=-0.009 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~--- 457 (721)
...++.+|..+...|++++|+..|+++++.+ +..++..+|.++...|++++|+..|.++++.+|+.+.++..+|.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4557789999999999999999999999984 45578889999999999999999999999999999999888875
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHH
Q 004984 458 -YCEGDKRWEDLDKATALDPTLSYPYM----------------YRASSLMTKQNVEAALAEINRILGFKLA---LECLEL 517 (721)
Q Consensus 458 -~~~~~eAl~d~~kAieLdP~~~~ay~----------------~rg~~l~~lg~~~eAl~~~~kAL~l~P~---~~~~~~ 517 (721)
.++.++|+..|+++++++|++..++. .+|.++ ..|++++|+..|+++++++|+ +..+..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 36779999999999999999998887 567776 999999999999999999997 577788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH
Q 004984 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (721)
Q Consensus 518 R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL 597 (721)
+|.++...|++++|+..|+++++++|++. .+...++.+.....++++| +..+++++
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~g~~~~A------------------~~~~~~al 278 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDY------LLWNKLGATLANGNQSEEA------------------VAAYRRAL 278 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHH
Confidence 99999999999999999999999999983 3445555555556666666 88999999
Q ss_pred HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-----------HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-----------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
+++|.++.+++++|.++.++|++++|+..+++|++++|++ +.++.++|.++..+|++++|...++++++
T Consensus 279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999 89999999999999999999999998887
Q ss_pred c
Q 004984 667 M 667 (721)
Q Consensus 667 i 667 (721)
+
T Consensus 359 ~ 359 (368)
T 1fch_A 359 T 359 (368)
T ss_dssp H
T ss_pred H
Confidence 5
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=4.2e-26 Score=254.54 Aligned_cols=326 Identities=11% Similarity=0.030 Sum_probs=252.2
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHH
Q 004984 349 CLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGY 426 (721)
Q Consensus 349 ~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~ 426 (721)
.-+..+..... +.+.+...++++++..++. ..+++++|.++...|++++|+..|+++++++| ..++..+|.++.
T Consensus 29 ~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 29 KNRGNHFFTAK-NFNEAIKYYQYAIELDPNE---PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHTT-CCC-CHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 33444444433 5667788888877765433 57888999999999999999999999998854 557788999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHH-----------------------------------------------------
Q 004984 427 IKGHKLWAYEKLNSVISSVTPLGWMYQ----------------------------------------------------- 453 (721)
Q Consensus 427 ~~G~~~~A~~~~~~aI~~~~~~~~ay~----------------------------------------------------- 453 (721)
.+|++++|+..|+ ++...|+....+.
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 9999999999985 7766665332210
Q ss_pred ---------------HHhh------------cCChhHHHHHHHHHHhcCCCChH-------HHHHHHHHHHhcCCHHHHH
Q 004984 454 ---------------ERSL------------YCEGDKRWEDLDKATALDPTLSY-------PYMYRASSLMTKQNVEAAL 499 (721)
Q Consensus 454 ---------------~rg~------------~~~~~eAl~d~~kAieLdP~~~~-------ay~~rg~~l~~lg~~~eAl 499 (721)
..+. .+..++|+..|+++++++|+++. +|..+|.++...|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 0000 01348899999999999999855 6888999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 004984 500 AEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (721)
Q Consensus 500 ~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~ 579 (721)
..|+++++++|++..+..+|.++...|++++|+..|+++++++|++.. +...++.+.....++++|
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A-------- 329 (537)
T 3fp2_A 264 VLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP------TYYHRGQMYFILQDYKNA-------- 329 (537)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHH--------
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHhcCCHHHH--------
Confidence 999999999999888888999999999999999999999999999843 445555555555666666
Q ss_pred ccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004984 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659 (721)
Q Consensus 580 ~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~ 659 (721)
+..++++++++|.++.+++++|.++..+|++++|+..++++++++|++++++.++|.++..+|++++|+.
T Consensus 330 ----------~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 330 ----------KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp ----------HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHH-------HHHHHHHHhhcc------CCCCCchhhHHHHHHHhhc
Q 004984 660 KAEESIQMKRSFE-------AFFLKAYALADS------SQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 660 ~ye~Ai~i~~~~~-------a~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 703 (721)
.|++++++.|+.. .++.+|.++... .++..--...+..++.|++
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 9999999987653 355566555432 2222333444555555554
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=1.2e-26 Score=247.43 Aligned_cols=259 Identities=12% Similarity=-0.040 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL---- 457 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~---- 457 (721)
..++.+|..+...|++++|+..|+++++.+ ...++..+|.++..+|++++|+..|.++++.+|+.+.+|..+|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 445677777777777777777777777763 34456667777777777777777777666666666666665553
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHH----------HHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHh
Q 004984 458 YCEGDKRWEDLDKATALDPTLSYPYMYR----------ASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLA 524 (721)
Q Consensus 458 ~~~~~eAl~d~~kAieLdP~~~~ay~~r----------g~~l~~lg~~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~ 524 (721)
.++.++|+..|+++++++|++..++.++ |.++..+|++++|+..|+++++++|+ +..+..+|.++..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 2455666666666666666665555554 66666666666666666666666664 4555566666666
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 004984 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (721)
Q Consensus 525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~ 604 (721)
+|++++|+..|+++++++|++. .+...++.+.....++++| +..++++++++|.++
T Consensus 226 ~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVRPEDY------SLWNRLGATLANGDRSEEA------------------VEAYTRALEIQPGFI 281 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhcCCCch
Confidence 6666666666666666666652 2333333333333444444 556666666666666
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------------DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
.+++++|.++..+|++++|+..|++|++++|+ +..++.++|.++..+|+.+.+....++++.
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 66666666666666666666666666666665 355666666666666666666655555443
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-25 Score=248.99 Aligned_cols=275 Identities=16% Similarity=0.123 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHh---ccchHHHHHHHHHHHh-----c-----------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 004984 383 LLAFHQLGCVRLL---RKEYDEAEHLFEAAVN-----A-----------GHIYSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (721)
Q Consensus 383 ~la~~~lG~~~~~---~g~y~eA~~~f~~AL~-----~-----------~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~ 443 (721)
..+++.+|..... .|++++|+..|+++++ + ....++..+|.++...|++++|+..++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566788888886 8999999999999999 3 3455788899999999999999999999999
Q ss_pred cCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH
Q 004984 444 SVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR 518 (721)
Q Consensus 444 ~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R 518 (721)
..|+ +.++..+|. .++.++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..+
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 9999 888888875 366699999999999999999999999999999999999999999999999996 7888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 004984 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (721)
Q Consensus 519 ~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~ 598 (721)
|.++..+|++++|+..|+++++++|++.. +...++.+.....++++| +..++++++
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A------------------~~~~~~a~~ 400 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKFPEAPE------VPNFFAEILTDKNDFDKA------------------LKQYDLAIE 400 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHSTTCSH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHcccCHH------HHHHHHHHHHHCCCHHHH------------------HHHHHHHHH
Confidence 99999999999999999999999999843 444444444555555555 889999999
Q ss_pred hCCCChh------HHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 599 SDAPKGV------LYFRQSLLLLR---LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 599 l~P~~~~------~~~~~g~~L~~---lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~ 669 (721)
++|.++. +++++|.++.. +|++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 9999976 99999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CHH-HHHHHHHHhh
Q 004984 670 SFE-AFFLKAYALA 682 (721)
Q Consensus 670 ~~~-a~~~~~~~~~ 682 (721)
++. ++....+..+
T Consensus 481 ~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 481 TMEEKLQAITFAEA 494 (514)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 988 6666655543
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=2.5e-26 Score=245.11 Aligned_cols=245 Identities=10% Similarity=-0.059 Sum_probs=211.0
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 004984 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (721)
Q Consensus 416 ~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~ 491 (721)
.+++.+|.++...|++++|+..|+++++.+|+.+.+|..+|. .++.++|+..|++|++++|+++.+|.++|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 348889999999999999999999999999999999988875 3677999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHH----------HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 004984 492 KQNVEAALAEINRILGFKLA-LECLELR----------FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (721)
Q Consensus 492 lg~~~eAl~~~~kAL~l~P~-~~~~~~R----------~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~ 560 (721)
+|++++|+..|+++++++|+ ...+..+ |.++..+|++++|+..|+++++++|+... ..+...++.
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~ 221 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGV 221 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHH
Confidence 99999999999999999996 4444444 78999999999999999999999999311 224444555
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 004984 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (721)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (721)
+.....++++| +..++++++++|.++.+|+++|.++..+|++++|+..|++|++++|+++.+
T Consensus 222 ~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 283 (365)
T 4eqf_A 222 LFHLSGEFNRA------------------IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283 (365)
T ss_dssp HHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 55555666666 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------HHHHHHHHHHhh
Q 004984 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRS-------------FEAFFLKAYALA 682 (721)
Q Consensus 641 ~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~-------------~~a~~~~~~~~~ 682 (721)
++++|.++..+|++++|+..|++|+++.|+ ..+|...|.++.
T Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 346777666653
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.3e-25 Score=250.46 Aligned_cols=278 Identities=12% Similarity=0.093 Sum_probs=214.6
Q ss_pred cchHHHHHHHHHHHhccch---------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhH
Q 004984 397 KEYDEAEHLFEAAVNAGHI---------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDK 463 (721)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~---------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~e 463 (721)
|++++|+..|+++++..+. .++..+|.++...|++++|+..+.++++..|+ ..++..+|.. ++.++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHH
Confidence 4566666666666665432 24667888899999999999999999999998 8888888753 56699
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLS 542 (721)
Q Consensus 464 Al~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~ 542 (721)
|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++
T Consensus 295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999996 7778889999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHH------HHHHHHHH
Q 004984 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF------RQSLLLLR 616 (721)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~------~~g~~L~~ 616 (721)
|++.. +...++.+.....++++| +..++++++++|.+...+. ++|.++..
T Consensus 375 ~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 375 PTLPE------VPTFFAEILTDRGDFDTA------------------IKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp TTCTH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred CCChH------HHHHHHHHHHHhCCHHHH------------------HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 98843 344445455555555555 8899999999998887754 55688888
Q ss_pred c----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-H-----HHHHH
Q 004984 617 L----------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF-F-----LKAYA 680 (721)
Q Consensus 617 l----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~-~-----~~~~~ 680 (721)
+ |++++|+..++++++++|++++++.++|++++.+|++++|+..|++++++.|+.... - ..+.+
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 510 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKI 510 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhHHHHHHH
Confidence 8 999999999999999999999999999999999999999999999999999997722 1 11222
Q ss_pred hhccCCCCCchhhHHHHHH
Q 004984 681 LADSSQDSSCSSTVVSLLE 699 (721)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~ 699 (721)
......||+-+..+.+++.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~ 529 (537)
T 3fp2_A 511 QKRLRADPIISAKMELTLA 529 (537)
T ss_dssp HHHHHTC------------
T ss_pred HHhccccHHHHHHHhhHHH
Confidence 2233456777776665554
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=3.5e-26 Score=251.31 Aligned_cols=245 Identities=10% Similarity=0.015 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCC-HHHHHHHHHHHHhcCCCcHHHHHHHhh-
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGH-KLWAYEKLNSVISSVTPLGWMYQERSL- 457 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~-~~~A~~~~~~aI~~~~~~~~ay~~rg~- 457 (721)
...+++++|.++...|++++|+..|++||+++ +..+++++|.++..+|+ +++|+..|+++|+++|++..+|.++|.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 36778999999999999999999999999995 45678999999999997 999999999999999999999999985
Q ss_pred ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh-cCCHHHH-
Q 004984 458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA-LEDYQAA- 531 (721)
Q Consensus 458 ---~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~-lgd~eeA- 531 (721)
.++.++|+.+|++||+++|+++.+|++||.++..+|++++|+..|+++|+++|+ +.+|++||.++.. .|.+++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 367799999999999999999999999999999999999999999999999996 8999999999999 5555888
Q ss_pred ----HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh--hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 004984 532 ----LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID--NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (721)
Q Consensus 532 ----l~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~ 605 (721)
+..|++|++++|++.. +...++.+..... ++++ ++..+.++ +.+|.++.
T Consensus 256 ~~~el~~~~~Al~l~P~~~~------a~~~l~~ll~~~g~~~~~~------------------a~~~~~~~-~~~p~~~~ 310 (382)
T 2h6f_A 256 LEREVQYTLEMIKLVPHNES------AWNYLKGILQDRGLSKYPN------------------LLNQLLDL-QPSHSSPY 310 (382)
T ss_dssp HHHHHHHHHHHHHHSTTCHH------HHHHHHHHHTTTCGGGCHH------------------HHHHHHHH-TTTCCCHH
T ss_pred HHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHccCccchHH------------------HHHHHHHh-ccCCCCHH
Confidence 5999999999999943 3333322222211 2233 46677776 99999999
Q ss_pred HHHHHHHHHHHcC---------ChHHHHHHHHHH-HHhCCCChhHHHHHHHHHHhc
Q 004984 606 LYFRQSLLLLRLN---------CPEAAMRSLQLA-RQHAASDHERLVYEGWILYDT 651 (721)
Q Consensus 606 ~~~~~g~~L~~lg---------~~eeAl~~~~~A-l~l~P~~~ea~~~~G~~Ly~~ 651 (721)
++..+|.++.++| ..++|+..|+++ ++++|.....+.++|..+..+
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9999999999985 358999999999 999999999999999988765
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=4.7e-26 Score=236.25 Aligned_cols=263 Identities=10% Similarity=-0.037 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~--- 457 (721)
...++.+|..+...|++++|+..|+++++.. ...++..+|.++...|++++|+..+.++++..|+.+.++...|.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 3456789999999999999999999999884 45577889999999999999999999999999998888888765
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 004984 458 -YCEGDKRWEDLDKATALDPTLSYPYMYR--------------AS-SLMTKQNVEAALAEINRILGFKLA-LECLELRFC 520 (721)
Q Consensus 458 -~~~~~eAl~d~~kAieLdP~~~~ay~~r--------------g~-~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~ 520 (721)
.++.++|+..|+++++++|++...+..+ |. ++...|++++|+..++++++.+|+ +..+..+|.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3677999999999999999999999988 77 799999999999999999999996 788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC
Q 004984 521 FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600 (721)
Q Consensus 521 ~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~ 600 (721)
++..+|++++|+..|+++++++|++.. +...++.+.....++++| +..++++++.+
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~ 236 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQ------LWNKLGATLANGNRPQEA------------------LDAYNRALDIN 236 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcC
Confidence 999999999999999999999999843 444444445555566666 88999999999
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------------DHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
|.++.+++++|.++..+|++++|+..++++++++|+ +..++.++|.++..+|++++|...+++++++-
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 89999999999999999999999999988865
Q ss_pred C
Q 004984 669 R 669 (721)
Q Consensus 669 ~ 669 (721)
|
T Consensus 317 ~ 317 (327)
T 3cv0_A 317 A 317 (327)
T ss_dssp H
T ss_pred c
Confidence 4
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.1e-25 Score=244.55 Aligned_cols=266 Identities=11% Similarity=-0.043 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc---------c--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC------
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---------H--IYSIAGLARLGYIKGHKLWAYEKLNSVISSV------ 445 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---------~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~------ 445 (721)
+..++++|.++..+|++++|++.|++|+++. + ..++.++|.+|..+|++++|+..+++++++.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4567789999999999999999999999861 1 2346789999999999999999999999863
Q ss_pred --CCcHHHHHHHhh----c--CChhHHHHHHHHHHhcCCCChHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCC-HH
Q 004984 446 --TPLGWMYQERSL----Y--CEGDKRWEDLDKATALDPTLSYPYMYRASSLM---TKQNVEAALAEINRILGFKLA-LE 513 (721)
Q Consensus 446 --~~~~~ay~~rg~----~--~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~---~lg~~~eAl~~~~kAL~l~P~-~~ 513 (721)
+..+.++.+.|. . +.+++|+..|++|++++|+++.++.++|.++. ..+++++|+..|++||+++|+ +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 345666666652 1 23499999999999999999999999999855 467889999999999999996 67
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 004984 514 CLELRFCFFL----ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (721)
Q Consensus 514 ~~~~R~~~~~----~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a 589 (721)
.+.++|..+. ..|++++|+..|+++++++|++.. +...++.+.....++++|
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~------~~~~lg~~~~~~~~~~~A------------------ 266 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD------VLRSAAKFYRRKDEPDKA------------------ 266 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH------HHHHHHHHHHHTTCHHHH------------------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHHcCchHHH------------------
Confidence 7777775544 457889999999999999999843 445555555556666666
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLR-------------------LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~-------------------lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~ 650 (721)
+..+.++++.+|.++.+++++|.++.. .+.+++|+..+++|++++|+++.++.++|.++..
T Consensus 267 ~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 267 IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 889999999999999999999998754 3457889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCHH
Q 004984 651 TSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 651 ~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+|++++|+..|++|++++|+..
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHH
T ss_pred hccHHHHHHHHHHHHhcCCCCh
Confidence 9999999999999999998875
No 24
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=8e-25 Score=248.21 Aligned_cols=289 Identities=8% Similarity=-0.037 Sum_probs=249.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCCh
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG 461 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~ 461 (721)
..++..+...|++++|+..|+++++. +...++..+|.++...|++++|++.|+++++..|+...++...+. .++.
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence 33466777889999999999999886 456678889999999999999999999999998876555544432 2555
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|+++++++|+ ...+..++.++...|++++|+..|+++++
T Consensus 356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999996 78888999999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (721)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (721)
++|++.. +...++.+.....++++| +..++++++++|.++.+|+.+|.++.+.|++
T Consensus 436 ~~~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 436 LFQGTHL------PYLFLGMQHMQLGNILLA------------------NEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp TTTTCSH------HHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred hCccchH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 9998743 333344444445555555 8899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchh
Q 004984 621 EAAMRSLQLARQH------AASD-HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSS 692 (721)
Q Consensus 621 eeAl~~~~~Al~l------~P~~-~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~ 692 (721)
++|+..|++++++ +|++ ..++.++|+++...|++++|+..|++++++.|+.. +|+..|.++...+ --.
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~ 567 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK----IPG 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT----CHH
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC----CHH
Confidence 9999999999999 6765 78999999999999999999999999999999665 9999999998765 244
Q ss_pred hHHHHHHHhhc
Q 004984 693 TVVSLLEDALK 703 (721)
Q Consensus 693 ~~~~~~~~~~~ 703 (721)
..+..++.+++
T Consensus 568 ~A~~~~~~~l~ 578 (597)
T 2xpi_A 568 LAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 56677777765
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=6.5e-25 Score=227.98 Aligned_cols=275 Identities=12% Similarity=-0.042 Sum_probs=234.4
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhC-CHHHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKG-HKLWAYEK 437 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G-~~~~A~~~ 437 (721)
+.+....+++++++..+.. ..+++.++.++...|++++|+..|+++++.+ ...++..+|.++...| ++++|+..
T Consensus 37 ~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 113 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5667777888866554432 3456678888999999999999999999985 4567888999999999 99999999
Q ss_pred HHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 004984 438 LNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L 512 (721)
Q Consensus 438 ~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~ 512 (721)
|.++++..|+.+.+|..+|.. ++.++|+..|++|++++|++..++..+|.++..+|++++|+..|+++++++|+ +
T Consensus 114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence 999999999988888887653 67799999999999999999999999999999999999999999999999996 7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh---hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 004984 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF---EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (721)
Q Consensus 513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~---~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a 589 (721)
..+..+|.++..+|++++|+..|++++++.|..... .....+...++.+.....++++|
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------ 255 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA------------------ 255 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH------------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH------------------
Confidence 888899999999999999999999999997543111 01133455555555555666666
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH-HhcCCHHH
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL-YDTSHCEE 656 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L-y~~G~~de 656 (721)
+..++++++++|.++.+++++|.++..+|++++|+..++++++++|+++.++..+|+++ ..+|+.+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhc
Confidence 88999999999999999999999999999999999999999999999999999999999 67777653
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=3.2e-25 Score=222.59 Aligned_cols=179 Identities=17% Similarity=0.105 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-----------CCHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL-----------EDYQ 529 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l-----------gd~e 529 (721)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+ |+++
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~ 101 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE 101 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence 44444455555555555555555555555555555555555555555553 44555555555555 5555
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 004984 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (721)
Q Consensus 530 eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~ 609 (721)
+|+..|+++++++|++. .+...++.+.....++++| +..++++++++ .++.++++
T Consensus 102 ~A~~~~~~al~~~P~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 102 QALSVLKDAERVNPRYA------PLHLQRGLVYALLGERDKA------------------EASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChHHH------------------HHHHHHHHhcc-cchHHHHH
Confidence 55555555555555552 2233333333333333333 55556666666 66778889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
+|.++..+|++++|+..|++|++++|++++++.++|.++..+|++++|+..|+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999875
No 27
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.93 E-value=3.8e-26 Score=222.35 Aligned_cols=143 Identities=21% Similarity=0.305 Sum_probs=132.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+.+++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+...+|.|++ +++++|+.+|+|+|||+++ ++.++
T Consensus 28 l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~~l~~~Yt~~~~-~~~~~ 104 (172)
T 3htm_A 28 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYTGKAP-NLDKM 104 (172)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECS--SCHHHHHHHHHHHHHSCCT-TGGGT
T ss_pred HHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecC--CCHHHHHHHHHHHhCCCCC-CcHHH
Confidence 44678899999999999999999999999999999999999999999999994 9999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCCh
Q 004984 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND 321 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~ 321 (721)
+.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..++++.|...|.+++.+|+...+..
T Consensus 105 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s 170 (172)
T 3htm_A 105 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLET 170 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999985 7999999999999999999999999999999876543
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=2.8e-24 Score=222.87 Aligned_cols=247 Identities=15% Similarity=0.040 Sum_probs=217.2
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 004984 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLM 490 (721)
Q Consensus 415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~ 490 (721)
...++.+|..+...|++++|+..++++++.+|+.+.++..+|. .++.++|+..|+++++++|+++.+|..+|.++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999888888874 367799999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-HHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984 491 TKQNVEAALAEINRILGFKLA-LECLELR--------------FC-FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (721)
Q Consensus 491 ~lg~~~eAl~~~~kAL~l~P~-~~~~~~R--------------~~-~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a 554 (721)
..|++++|+..|+++++.+|+ ...+..+ +. ++...|++++|+..|+++++++|++. .+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~ 174 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA------QL 174 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH------HH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH------HH
Confidence 999999999999999999996 4444444 44 68899999999999999999999973 34
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004984 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (721)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 634 (721)
...++.+.....++++| +..++++++.+|.++.+++++|.++..+|++++|+..++++++++
T Consensus 175 ~~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSA------------------AANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHH------------------HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44444445555556655 889999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------HH-HHHHHHHHhhccC
Q 004984 635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS------------FE-AFFLKAYALADSS 685 (721)
Q Consensus 635 P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~------------~~-a~~~~~~~~~~~~ 685 (721)
|++.++++++|.+++.+|++++|+..|++++++.|+ .. +|+..|.++...+
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999 55 9999999887654
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3e-24 Score=214.98 Aligned_cols=234 Identities=13% Similarity=0.091 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~ 460 (721)
.+.+++.+|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..+.++++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----------------- 66 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVE----------------- 66 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------------
Confidence 46677888888888888888888888888774 445667777777777777766666555544
Q ss_pred hhHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004984 461 GDKRWEDLDKATALDPTL-------SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALC 533 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~-------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~ 533 (721)
++|++ +.+|.++|.++..+|++++|+..|++++.++|+.. ++..+|++++|+.
T Consensus 67 -------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 67 -------------QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELK 126 (258)
T ss_dssp -------------HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHH
T ss_pred -------------hCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHH
Confidence 44444 67788888888888888888888888888888743 4566777888888
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH
Q 004984 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (721)
Q Consensus 534 d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~ 613 (721)
.+++++..+|++. .+...++.+.....++++| +..++++++.+|.++.+++++|.+
T Consensus 127 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~l~~~ 182 (258)
T 3uq3_A 127 KAEAEAYVNPEKA------EEARLEGKEYFTKSDWPNA------------------VKAYTEMIKRAPEDARGYSNRAAA 182 (258)
T ss_dssp HHHHHHHCCHHHH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCcchH------HHHHHHHHHHHHhcCHHHH------------------HHHHHHHHhcCcccHHHHHHHHHH
Confidence 8888888888763 3444444444455555555 778888888888889999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCHH-HHHH
Q 004984 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK------RSFE-AFFL 676 (721)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~------~~~~-a~~~ 676 (721)
+..+|++++|+..++++++++|++++++.++|.++..+|++++|+..|++++++. |+.. ++..
T Consensus 183 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 183 LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 6655 4433
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=8.5e-24 Score=212.19 Aligned_cols=185 Identities=17% Similarity=0.042 Sum_probs=166.7
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (721)
Q Consensus 476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a 554 (721)
|+++.+|+++|.++...|++++|+..|+++|+++|+ +..+.++|.++..+|++++|+..|+++++++|++.. +
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------G 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------H
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------H
Confidence 889999999999999999999999999999999996 888999999999999999999999999999999954 3
Q ss_pred HHHHHHHHHhh-----------hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 004984 555 SQLHMLVREHI-----------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (721)
Q Consensus 555 ~~~~~~l~~~~-----------~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA 623 (721)
...++.+.... .++++| +..++++++++|+++.+|+++|.++..+|++++|
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQA------------------LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 44444444444 555555 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 004984 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (721)
Q Consensus 624 l~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (721)
+..|++|++++ +++++++++|.++..+|++++|+..|+++++++|++. ++++.|.++...+
T Consensus 138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 99999999999 9999999999999999999999999999999999988 9999999987764
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=4.1e-24 Score=217.33 Aligned_cols=231 Identities=12% Similarity=-0.011 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC--CCc-HHHHHHHhh-
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TPL-GWMYQERSL- 457 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~--~~~-~~ay~~rg~- 457 (721)
..++.+|..+...|++++|+..|+++++.+ ...++..+|.++...|++++|+..+.++++.. +.. +.+|..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 346778888888899999999999988884 34467788888888888888888877777721 111 222333332
Q ss_pred ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 004984 458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC 533 (721)
Q Consensus 458 ---~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~ 533 (721)
.++.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|......+++++|+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 133355555555555555555555555555555555555555555555555553 4444445522222235555555
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH
Q 004984 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (721)
Q Consensus 534 d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~ 613 (721)
.|+++ ++++|.++.+++++|.+
T Consensus 164 ~~~~a----------------------------------------------------------~~~~p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 164 SFVKV----------------------------------------------------------LELKPNIYIGYLWRARA 185 (272)
T ss_dssp HHHHH----------------------------------------------------------HHHSTTCHHHHHHHHHH
T ss_pred HHHHH----------------------------------------------------------HHhCccchHHHHHHHHH
Confidence 55444 55555555556666666
Q ss_pred HHHcCC---hHHHHHHHHHHHHhC---CCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 614 LLRLNC---PEAAMRSLQLARQHA---ASD-----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 614 L~~lg~---~eeAl~~~~~Al~l~---P~~-----~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+..+|+ +++|+..|++|+++. |+. .+++.++|.++..+|++++|+..|+++++++|+.+
T Consensus 186 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 666666 666666666666665 432 25666666666666666666666666666666665
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.92 E-value=1.8e-23 Score=220.32 Aligned_cols=249 Identities=17% Similarity=0.131 Sum_probs=208.5
Q ss_pred HHhccchHHHHHHHHHHHhccch---hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHH
Q 004984 393 RLLRKEYDEAEHLFEAAVNAGHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRW 465 (721)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~~~~---~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl 465 (721)
.+..|+|.+|+..+++.....|. .+...++++|..+|+++.|+..++.. .|+...++...+.+ ++.++|+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 45679999999999987766544 35577899999999999999988652 55555565555432 4569999
Q ss_pred HHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984 466 EDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLS 542 (721)
Q Consensus 466 ~d~~kAieL--dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~ 542 (721)
..|+++++. +|+++.+++.+|.++...|++++|+..+++ | +++.+..++.++..+|++++|+..|+++++++
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999999876 699999999999999999999999999999 6 48888899999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 004984 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (721)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e 621 (721)
|++.... . +.+|..++.. .+++. |+..++++++.+|.++.+|+++|.++.++|+++
T Consensus 161 p~~~~~~--l------------------~~a~~~l~~~---~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 161 EDATLTQ--L------------------ATAWVSLAAG---GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp TTCHHHH--H------------------HHHHHHHHHC---TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCcHHHH--H------------------HHHHHHHHhC---chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 9973210 0 1122222211 12222 488999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCHH
Q 004984 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQMKRSFE 672 (721)
Q Consensus 622 eAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA-l~~ye~Ai~i~~~~~ 672 (721)
+|+..+++|++++|+++++++++|.++..+|+.+++ ...++++++++|+..
T Consensus 218 eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 218 AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999999999999875 578899999999987
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=2.2e-23 Score=211.94 Aligned_cols=238 Identities=9% Similarity=-0.068 Sum_probs=196.5
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--c---hhhHhhHHHHHHHhCCHHHHH
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--H---IYSIAGLARLGYIKGHKLWAY 435 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~---~~A~~~lg~~~~~~G~~~~A~ 435 (721)
+.+.+...++++++..+.. ..+++.+|.++...|++++|+..|+++++.. + ..++..+|.++..+|++++|+
T Consensus 18 ~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 4567778888877655432 4478899999999999999999999999952 1 224788999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 436 EKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRA-SSLMTKQNVEAALAEINRILGFKL 510 (721)
Q Consensus 436 ~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg-~~l~~lg~~~eAl~~~~kAL~l~P 510 (721)
..|.++++.+|+.+.++..+|. .++.++|+..|++|++++|+++.+|.++| .++. .+++++|+..|+++++++|
T Consensus 95 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELKP 173 (272)
T ss_dssp HHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCc
Confidence 9999999999999888888875 36779999999999999999999999999 5555 5599999999999999999
Q ss_pred C-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccc
Q 004984 511 A-LECLELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD 586 (721)
Q Consensus 511 ~-~~~~~~R~~~~~~lgd---~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd 586 (721)
+ +..+..+|.++..+|+ +++|+..|++++++...... . .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~----------------~----------------- 216 (272)
T 3u4t_A 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA----K----------------Y----------------- 216 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG----G----------------G-----------------
T ss_pred cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc----c----------------c-----------------
Confidence 7 7888889999999999 89999999999988644310 0 0
Q ss_pred cchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984 587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (721)
Q Consensus 587 ~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G 652 (721)
.+....+++++|.++..+|++++|+..+++|++++|+++.+.-.+|++.-..|
T Consensus 217 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 217 -------------KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred -------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 00113568889999999999999999999999999999999999988875544
No 34
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=8.7e-24 Score=228.34 Aligned_cols=291 Identities=12% Similarity=-0.026 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCc
Q 004984 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPL 448 (721)
Q Consensus 381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~------~~~~ 448 (721)
.....++.+|..+...|++++|+..|++|+++++. .++..+|.++..+|++++|+..+.++++. .+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 44667789999999999999999999999998543 46888999999999999999999999987 4556
Q ss_pred HHHHHHHhh----cCChhHHHHHHHHHHhc------CCCChHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 004984 449 GWMYQERSL----YCEGDKRWEDLDKATAL------DPTLSYPYMYRASSLMTKQN-----------------VEAALAE 501 (721)
Q Consensus 449 ~~ay~~rg~----~~~~~eAl~d~~kAieL------dP~~~~ay~~rg~~l~~lg~-----------------~~eAl~~ 501 (721)
+.++..+|. .++.++|+..|++|+++ .|..+.+|.++|.++..+|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 666666654 25669999999999999 78888999999999999999 9999999
Q ss_pred HHHHHhcCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 004984 502 INRILGFKL---A----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (721)
Q Consensus 502 ~~kAL~l~P---~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~ 574 (721)
|++++++.+ + ...+.++|.++..+|++++|+..|++++++.|++........+...++.+.....++++|
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--- 282 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA--- 282 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH---
Confidence 999998742 1 345677899999999999999999999999887543333344555555555555555555
Q ss_pred HhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHH
Q 004984 575 LQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLV 642 (721)
Q Consensus 575 ~~l~~~~~~~dd~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~ 642 (721)
+..+++++++.|.. +.++.++|.++..+|++++|+..+++|+++.++. +.++.
T Consensus 283 ---------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 347 (411)
T 4a1s_A 283 ---------------AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347 (411)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 78899999998865 7889999999999999999999999999997765 45999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCC
Q 004984 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (721)
Q Consensus 643 ~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~ 689 (721)
++|.++..+|++++|+..|++|+++.+....-...+-..-+++.+.+
T Consensus 348 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 394 (411)
T 4a1s_A 348 SLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXXXXXXXXXXXXXXX 394 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 99999999999999999999999999998866666666665544433
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.6e-23 Score=206.33 Aligned_cols=232 Identities=13% Similarity=0.110 Sum_probs=203.7
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc---------hhhHh
Q 004984 349 CLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---------IYSIA 419 (721)
Q Consensus 349 ~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---------~~A~~ 419 (721)
..+..+.... .+.+.+...+++++... ....+++.+|.++...|++++|+..|++++++.+ ..++.
T Consensus 9 ~~~g~~~~~~-~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 9 KAEGNKFYKA-RQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHh-ccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3344444443 35667778888877664 3467889999999999999999999999999854 46788
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 004984 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL 499 (721)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl 499 (721)
.+|.++...|++++|+..+.++++..|+ +..+...|.+ ++|+..|+++++++|+++.+|.++|.++...|++++|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRNA---EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-hHHHHHHhHH---HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999999999999876 8889999888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (721)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (721)
..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 160 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------------------------- 206 (258)
T 3uq3_A 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--------------------------------- 206 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH---------------------------------
Confidence 999999999996 7888899999999999999999888888877775
Q ss_pred hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCChhHHHHHHHH
Q 004984 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA------ASDHERLVYEGWI 647 (721)
Q Consensus 579 ~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~------P~~~ea~~~~G~~ 647 (721)
+.+|+++|.++..+|++++|+..+++|++++ |++.+++..++.+
T Consensus 207 -------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 207 -------------------------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3557889999999999999999999999999 9998888777654
No 36
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=2.3e-23 Score=200.85 Aligned_cols=174 Identities=11% Similarity=0.084 Sum_probs=145.4
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (721)
Q Consensus 477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~ 555 (721)
+.+..|+++|.++..+|++++|+..|++||+++|+ +..+..+|.++..+|++++|+..+++++..+|++.. +.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE------AY 76 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------HH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH------HH
Confidence 45677888888888888888888888888888885 777777888888888888888888888888888732 33
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (721)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (721)
...+.+.....+++.| ...+.+++.++|.++.+++.+|.++.++|++++|+..|+++++++|
T Consensus 77 ~~~~~~~~~~~~~~~a------------------~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 77 YILGSANFMIDEKQAA------------------IDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 4444444444555555 6678888888888899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (721)
Q Consensus 636 ~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~ 674 (721)
+++++++++|.++..+|++++|+..|++|++++|+.+-|
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHH
Confidence 999999999999999999999999999999999987544
No 37
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=9.5e-24 Score=225.68 Aligned_cols=285 Identities=12% Similarity=-0.040 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHH
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGW 450 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~------~~~~~~ 450 (721)
..++..+|..+...|++++|+..|++|++.++. .++..+|.++...|++++|+..+.+++.. .|..+.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 456788999999999999999999999998543 46788999999999999999999999887 334456
Q ss_pred HHHHHhh----cCChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCC--------------------HHHHHH
Q 004984 451 MYQERSL----YCEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQN--------------------VEAALA 500 (721)
Q Consensus 451 ay~~rg~----~~~~~eAl~d~~kAieLdP~~------~~ay~~rg~~l~~lg~--------------------~~eAl~ 500 (721)
++..+|. .++.++|+..|++|+++.|+. +.++.++|.++..+|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6666654 256699999999999998876 4599999999999999 999999
Q ss_pred HHHHHHhcC------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 004984 501 EINRILGFK------LA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (721)
Q Consensus 501 ~~~kAL~l~------P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~ 573 (721)
.|++++++. |. ...+.++|.++..+|++++|+..|++++++.|+.........+...++.+.....++++|
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-- 246 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA-- 246 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH--
Confidence 999999872 22 345677899999999999999999999999887643333344555555555555555555
Q ss_pred HHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHH
Q 004984 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERL 641 (721)
Q Consensus 574 ~~~l~~~~~~~dd~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~ 641 (721)
+..+++++++.|.. +.+++++|.++..+|++++|+..+++|+++.+.. +.++
T Consensus 247 ----------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 310 (406)
T 3sf4_A 247 ----------------SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310 (406)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 78899999998877 8899999999999999999999999999997766 6799
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------H-HHHHHHHHhhccC
Q 004984 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSF------E-AFFLKAYALADSS 685 (721)
Q Consensus 642 ~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~------~-a~~~~~~~~~~~~ 685 (721)
.++|.++..+|++++|+..|++|+++.+.. . +++..|.++...+
T Consensus 311 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 999999999999999999999999984332 2 7777777765444
No 38
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=3.3e-23 Score=213.64 Aligned_cols=271 Identities=12% Similarity=-0.023 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHH
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGW 450 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~------~~~~~~ 450 (721)
...++..|..+...|++++|+..|++|++.++. .++..+|.++...|++++|+..+.++++. .+..+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 456678899999999999999999999998443 46778999999999999999999999887 334455
Q ss_pred HHHHHhh----cCChhHHHHHHHHHHhcCCCChH------HHHHHHHHHHhcCC--------------------HHHHHH
Q 004984 451 MYQERSL----YCEGDKRWEDLDKATALDPTLSY------PYMYRASSLMTKQN--------------------VEAALA 500 (721)
Q Consensus 451 ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~------ay~~rg~~l~~lg~--------------------~~eAl~ 500 (721)
++..+|. .++.++|+..|++|+++.|+... +|.++|.++..+|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 5655553 25669999999999999887644 99999999999999 999999
Q ss_pred HHHHHHhcCC------C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 004984 501 EINRILGFKL------A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (721)
Q Consensus 501 ~~~kAL~l~P------~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~ 573 (721)
.+++++.+.+ . ...+..+|.++..+|++++|+..|++++++.|..........+....+.+.....++++|
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-- 242 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA-- 242 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH--
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH--
Confidence 9999998732 2 345677899999999999999999999999876533223333555555555555555555
Q ss_pred HHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHH
Q 004984 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERL 641 (721)
Q Consensus 574 ~~~l~~~~~~~dd~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~ 641 (721)
+..+++++++.|.. +.+++++|.++..+|++++|+..+++|+++.|.. ..++
T Consensus 243 ----------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 243 ----------------SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 77889999988877 7899999999999999999999999999998776 4499
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 642 ~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~ 671 (721)
.++|.++..+|++++|+..|++|+++.++.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998764
No 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.90 E-value=3.6e-24 Score=228.49 Aligned_cols=142 Identities=21% Similarity=0.307 Sum_probs=126.8
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+.+++.+|||+|.|+|++|+|||.|||++||||++||.++|.|+...+|+|++ +++++|+.+|+|+|||+++ ++.++
T Consensus 168 l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~~L~~iYt~~~~-~~~~~ 244 (312)
T 3hqi_A 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYTGKAP-NLDKM 244 (312)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECS--SCHHHHHHHHHHHHHSCCT-THHHH
T ss_pred HHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecC--CCHHHHHHHHHhhcCCCCC-ChHHH
Confidence 34678899999999999999999999999999999999999999999999995 9999999999999999999 88999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCC
Q 004984 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN 320 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~ 320 (721)
+.+||.+|++|+++.|+..|+++|.+.++ .+||+.++.+|..|+++.|.+.|++++..|+...+.
T Consensus 245 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~-~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~ 309 (312)
T 3hqi_A 245 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLE 309 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999985 799999999999999999999999999999876544
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=3.5e-23 Score=210.00 Aligned_cols=245 Identities=12% Similarity=0.011 Sum_probs=194.6
Q ss_pred HHHHHHhccchHHHHHHHHHHHhc------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----c
Q 004984 389 LGCVRLLRKEYDEAEHLFEAAVNA------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----Y 458 (721)
Q Consensus 389 lG~~~~~~g~y~eA~~~f~~AL~~------~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~ 458 (721)
++......|++++|+..|+++++. +...++..+|.++...|++++|+..|.++++.+|+.+.+|..+|. .
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 344455678999999999999986 245578889999999999999999999999999998888888875 3
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
++.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+.........+....|++++|+..|+++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999999999997443333334457779999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC----hhHHHHHHHHH
Q 004984 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK----GVLYFRQSLLL 614 (721)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~----~~~~~~~g~~L 614 (721)
+...|++........ +..... +..+|+..+.+++..+|.. +.+++++|.++
T Consensus 171 ~~~~~~~~~~~~~~~-------~~~~~~------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 171 FEKSDKEQWGWNIVE-------FYLGNI------------------SEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp HHHSCCCSTHHHHHH-------HHTTSS------------------CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHH-------HHHHhc------------------CHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 999998743221111 011111 1122467778877777743 78999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (721)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y 661 (721)
.++|++++|+..+++|++++|++... .|.++..+|++++|++.|
T Consensus 226 ~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999987654 488999999999999887
No 41
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.90 E-value=1.1e-24 Score=206.00 Aligned_cols=126 Identities=22% Similarity=0.323 Sum_probs=96.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+.+++.+|||+|+++|++|+|||.||+++|+||++||.++|.|+...+|++++ +++++|+.+++|+|||+++ ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~~~~~l~~~Y~~~~~-~~~~~ 95 (145)
T 4eoz_A 19 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYTGKAP-NLDKM 95 (145)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECS--SCHHHHHHHHHHHHHSCCT-TGGGT
T ss_pred HHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecC--CCHHHHHHHHHhhccCccC-CcHHH
Confidence 44678899999999999999999999999999999999999999999999994 9999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHH
Q 004984 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLA 304 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~ 304 (721)
+.+++.+|++|+++.|++.|+++|.+.++ .+||+.++.+|..|+++.|.
T Consensus 96 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~l~~A~~~~~~~Lk 144 (145)
T 4eoz_A 96 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLK 144 (145)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHhc
Confidence 99999999999999999999999999995 79999999999999998875
No 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=2.7e-22 Score=225.66 Aligned_cols=212 Identities=13% Similarity=-0.025 Sum_probs=187.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCCh-hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 429 GHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG-DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN 503 (721)
Q Consensus 429 G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~-~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~ 503 (721)
+..++|+..+.+.....|+.+.+++.+|. .+++ ++|+..|++|++++|+++.+|+++|.+|..+|++++|+..|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44566666777777777778888888875 3677 899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh--------h
Q 004984 504 RILGFKLALECLELRFCFFLAL---------EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI--------D 566 (721)
Q Consensus 504 kAL~l~P~~~~~~~R~~~~~~l---------gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~--------~ 566 (721)
+|++++|++..+.++|.++..+ |++++|+..|+++++++|++.. +...++.+.... .
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR------SWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHHhhccccc
Confidence 9999999988888899999999 9999999999999999999843 444444444444 5
Q ss_pred hhhHHHHHHhhhhccccccccchHHHHHHHHHhCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 004984 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (721)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P---~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 643 (721)
++++| +..++++++++| .++.+|+++|.++..+|++++|+..|++|++++|++++++.+
T Consensus 236 ~~~~A------------------~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~ 297 (474)
T 4abn_A 236 ISQQA------------------LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQR 297 (474)
T ss_dssp HHHHH------------------HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHH------------------HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 55555 889999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 004984 644 EGWILYDTSHCEEGLRKAEES 664 (721)
Q Consensus 644 ~G~~Ly~~G~~deAl~~ye~A 664 (721)
+|.++..+|++++|+..|++.
T Consensus 298 l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999888765
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=4.3e-21 Score=196.97 Aligned_cols=232 Identities=13% Similarity=0.055 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~----~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~ 458 (721)
..+++.+|..+...|++++|+.+|++|++.++..+++.+|.++.. .|++++|+..|.++++..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------------
Confidence 567889999999999999999999999999889999999999998 888877777766655542
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHH
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQA 530 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~ee 530 (721)
++.+++++|.++.. .+++++|+..|++|++.+ ++..+.++|.++.. .|++++
T Consensus 73 -------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 73 -------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp -------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred -------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHH
Confidence 44455555555555 555555555555555443 34445555555555 555555
Q ss_pred HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 004984 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (721)
Q Consensus 531 Al~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~ 606 (721)
|+..|++++++++.. +...++.+... ..++++| +..++++++. +++.+
T Consensus 133 A~~~~~~a~~~~~~~--------a~~~lg~~~~~~~~~~~~~~~A------------------~~~~~~a~~~--~~~~a 184 (273)
T 1ouv_A 133 AVEYFTKACDLNDGD--------GCTILGSLYDAGRGTPKDLKKA------------------LASYDKACDL--KDSPG 184 (273)
T ss_dssp HHHHHHHHHHTTCHH--------HHHHHHHHHHHTSSSCCCHHHH------------------HHHHHHHHHT--TCHHH
T ss_pred HHHHHHHHHhcCcHH--------HHHHHHHHHHcCCCCCCCHHHH------------------HHHHHHHHHC--CCHHH
Confidence 555555555554221 11111211111 2222222 4455555554 34677
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 004984 607 YFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLK 677 (721)
Q Consensus 607 ~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~----~G~~deAl~~ye~Ai~i~~~~~a~~~~ 677 (721)
++++|.++.. .+++++|+..+++|++..| +++++++|.++.. .|++++|+..|++|+++.|+...+.+.
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8899999999 9999999999999999976 8999999999999 999999999999999999998866655
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=8.3e-22 Score=196.09 Aligned_cols=206 Identities=16% Similarity=0.108 Sum_probs=156.6
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (721)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (721)
.|..+...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+ ...+..+|.++..+|
T Consensus 29 ~a~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 29 QMGRGSEFGDY---EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence 34444444444 77777777788888888888888888888888888888888888888775 666677778888888
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 004984 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (721)
Q Consensus 527 d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~ 606 (721)
++++|+..|+++++++|++.. +...++.+.....++++| +..++++++.+|.++.+
T Consensus 106 ~~~~A~~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~ 161 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMENGD------LFYMLGTVLVKLEQPKLA------------------LPYLQRAVELNENDTEA 161 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCSHH------HHHHHHHHHHHTSCHHHH------------------HHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhccHHHH------------------HHHHHHHHHhCCccHHH
Confidence 888888888888888887632 333334344444444444 67788888888888889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 004984 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~ 680 (721)
++++|.++..+|++++|+..++++++.+|+++.++.++|.+++.+|++++|+..|++++++.|+.. +++..+..
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988 77776654
No 45
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.88 E-value=4.6e-23 Score=185.89 Aligned_cols=103 Identities=19% Similarity=0.381 Sum_probs=92.3
Q ss_pred cCCCCCccEEEEEcC----eEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCC
Q 004984 176 SGDQVLRNVVFRIHE----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT 251 (721)
Q Consensus 176 ~~~~~~~DV~l~v~~----~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~ 251 (721)
.+++.+|||+|+|+| ++|+|||.||+++|+||++||.++|.|+. .+|+|++ +++++|+.+++|+|||+++ ++
T Consensus 3 ~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~--~~~~~f~~~l~~iYt~~~~-~~ 78 (109)
T 2vkp_A 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPD--VEPAAFLILLKYMYSDEID-LE 78 (109)
T ss_dssp TTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETT--SCHHHHHHHHHHHHHCCCC-CC
T ss_pred ccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCC--CCHHHHHHHHHHHcCCCcc-CC
Confidence 467889999999988 89999999999999999999999999998 9999994 9999999999999999999 99
Q ss_pred HHHHHHHHHHhhhcChhhHHHHHHHHHHhhc
Q 004984 252 PNLLLEILIFANKFCCERLKDACDRKLASLV 282 (721)
Q Consensus 252 ~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l 282 (721)
.+++.+++.+|++|+++.|++.|+++|.+.+
T Consensus 79 ~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 79 ADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998754
No 46
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=2.1e-22 Score=238.19 Aligned_cols=175 Identities=11% Similarity=-0.020 Sum_probs=151.1
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 004984 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (721)
Q Consensus 474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~ 552 (721)
-.|+++++|+++|.++.++|++++|+..|++||+++|+ +.+++++|.++..+|++++|+..|++|++++|++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~------ 77 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA------ 77 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------
Confidence 46888888888888888888888888888888888886 77788888888888888888888888888888883
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (721)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (721)
.++..++.+.....++++| +..|++||+++|+++++|+++|.++..+|++++|+..|++|++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A------------------~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGA------------------LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555566666666 7788888889999999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 633 l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
++|++++++.++|.++..+|++++|.+.|++++++.|+..
T Consensus 140 l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 9999999999999999999999999999999999977643
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=1.5e-21 Score=188.18 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~--- 457 (721)
...|+++|.++..+|+|++|+..|++||+++ +..++..+|.++..+|++++|+..+.+++...|+...++...|.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 4678899999999999999999999999995 56678899999999999999999999999999999999988875
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984 458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV 535 (721)
Q Consensus 458 -~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~ 535 (721)
.++.++|+..+.+|++++|++..++..+|.++..+|++++|+..|+++++++|+ +..++++|.++..+|++++|+..|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 366799999999999999999999999999999999999999999999999996 888999999999999999999999
Q ss_pred HHHHhhCCCch
Q 004984 536 QAILTLSPDYR 546 (721)
Q Consensus 536 ~kal~L~P~~~ 546 (721)
++|++++|++.
T Consensus 165 ~~al~~~p~~a 175 (184)
T 3vtx_A 165 KKALEKEEKKA 175 (184)
T ss_dssp HHHHHTTHHHH
T ss_pred HHHHhCCccCH
Confidence 99999999974
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=3.1e-21 Score=216.94 Aligned_cols=197 Identities=11% Similarity=0.073 Sum_probs=180.6
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV-EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~-~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal 539 (721)
++++..++++...+|+.+.+|+.+|.++..+|++ ++|+..|++|++++|+ ++.++.+|.++..+|++++|+..|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999 9999999999999996 8889999999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhh---------hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH
Q 004984 540 TLSPDYRMFEGRVAASQLHMLVREHI---------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (721)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~---------~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~ 610 (721)
+++|+. . +...++.+.... .++++| +..++++++++|.++.+|+++
T Consensus 165 ~~~p~~-~------~~~~lg~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 165 THCKNK-V------SLQNLSMVLRQLQTDSGDEHSRHVMDS------------------VRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp TTCCCH-H------HHHHHHHHHTTCCCSCHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHH
T ss_pred hhCCCH-H------HHHHHHHHHHHhccCChhhhhhhHHHH------------------HHHHHHHHHhCCCCHHHHHHH
Confidence 999993 2 334444444444 555555 889999999999999999999
Q ss_pred HHHHHHc--------CChHHHHHHHHHHHHhCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984 611 SLLLLRL--------NCPEAAMRSLQLARQHAA---SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (721)
Q Consensus 611 g~~L~~l--------g~~eeAl~~~~~Al~l~P---~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~ 678 (721)
|.++..+ |++++|+..|++|++++| +++++++++|.+++.+|++++|+..|++|++++|++. +++..|
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999 999999999999999999 9999999999999999999999999999999999998 899888
Q ss_pred HHhhc
Q 004984 679 YALAD 683 (721)
Q Consensus 679 ~~~~~ 683 (721)
.++..
T Consensus 300 ~~~~~ 304 (474)
T 4abn_A 300 QLLEF 304 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.1e-20 Score=199.10 Aligned_cols=231 Identities=10% Similarity=-0.036 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHh-cCC
Q 004984 400 DEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATA-LDP 476 (721)
Q Consensus 400 ~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAie-LdP 476 (721)
++|+..|++||+. ++..+|+.+|.++...|+. +... |.....++.+ ++|+..|++|++ ++|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~----------l~~~---g~~~~~~~~~---~~A~~~~~rAl~~~~p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL----------LAEK---GDMNNAKLFS---DEAANIYERAISTLLK 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HHHT---SCCHHHHHHH---HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----------hhhc---cchhhcccch---HHHHHHHHHHHHHhCc
Confidence 6788888888887 3455677777766543221 0000 0000111222 899999999999 799
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE-CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (721)
Q Consensus 477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~-~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a 554 (721)
++..+|.++|.++..+|++++|+..|+++|+++|+ +. .|...+.++...|++++|+..|++|++++|.....+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~----- 171 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY----- 171 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH-----
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH-----
Confidence 99999999999999999999999999999999996 65 788899999999999999999999999999873321
Q ss_pred HHHHHHHHH-hhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004984 555 SQLHMLVRE-HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (721)
Q Consensus 555 ~~~~~~l~~-~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (721)
.....+.. ...++++ |..+|+++|+.+|.++.+|.+.|..+.++|++++|+..|++|++.
T Consensus 172 -~~~a~~~~~~~~~~~~------------------A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 172 -VTAALMEYYCSKDKSV------------------AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp -HHHHHHHHHTSCCHHH------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHcCCHHH------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11111111 1233333 488999999999999999999999999999999999999999996
Q ss_pred ---CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 634 ---AAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 634 ---~P~-~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
.|+ +...+...+..+...|++++|...+++++++.|+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 564 7778888999999999999999999999999996
No 50
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=1.3e-20 Score=198.61 Aligned_cols=243 Identities=11% Similarity=-0.004 Sum_probs=203.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHhh----c
Q 004984 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPLGWMYQERSL----Y 458 (721)
Q Consensus 385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--~~~~~~ay~~rg~----~ 458 (721)
+...++.++...|++++|+..++.. ......++..++..+...|++++|++.+.++++. +|+++.+++.+|. .
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 4456788999999999999987662 2234446677888899999999999999999976 6988888888765 3
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH--HHHhcCCHHHHHHHH
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE-CLELRFC--FFLALEDYQAALCDV 535 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~-~~~~R~~--~~~~lgd~eeAl~d~ 535 (721)
|+.++|+..|++ |+++.++..+|.++..+|++++|+..|+++++++|+.. .....++ ++...|++++|+..|
T Consensus 115 g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~ 189 (291)
T 3mkr_A 115 QNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189 (291)
T ss_dssp TCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred CCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 677999999998 99999999999999999999999999999999999743 2222333 445669999999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (721)
Q Consensus 536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~ 615 (721)
+++++.+|++ ..+...++.+....+++++| ...++++|+++|.++++++++|.++.
T Consensus 190 ~~~l~~~p~~------~~~~~~la~~~~~~g~~~eA------------------~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 190 QEMADKCSPT------LLLLNGQAACHMAQGRWEAA------------------EGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp HHHHHHSCCC------HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCc------HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999998 34566666666677777777 78999999999999999999999999
Q ss_pred HcCChHH-HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984 616 RLNCPEA-AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (721)
Q Consensus 616 ~lg~~ee-Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y 661 (721)
.+|++.+ |.+.++++++++|+++.+.. ..-+.+.||++...|
T Consensus 246 ~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 246 HLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 9999976 57889999999999999876 466777888888777
No 51
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.87 E-value=1.1e-22 Score=186.84 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=92.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+.+++.+|||+|+++|++|+|||.||+++|+||++||.++|.|+....|+|++ +++++|+.+++|+|||++. ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~ll~~~Yt~~~~-~~~~~ 95 (120)
T 2if5_A 19 QRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDF--VSAEALTALMDFAYTATLT-VSTAN 95 (120)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCS--SCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred HHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCC--CCHHHHHHHHHHHcCCCCc-cCHHH
Confidence 34678899999999999999999999999999999999999999999999994 9999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHH
Q 004984 255 LLEILIFANKFCCERLKDACDRKL 278 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L 278 (721)
+.+++.+|++|+++.|++.|+++|
T Consensus 96 ~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 96 VGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999999999999999997
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.87 E-value=4e-21 Score=191.16 Aligned_cols=217 Identities=16% Similarity=0.070 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~ 460 (721)
..+++.+|..+...|++++|+..|+++++..+ ..++..+|.++...|++++|+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~----------------------- 79 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAF----------------------- 79 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH-----------------------
Confidence 56677888888888888888888888888743 44566677777776666655554
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal 539 (721)
|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|++++
T Consensus 80 -------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 80 -------YDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp -------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred -------HHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55566666666777777777777777777777777777777774 5666667777777777777777777777
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004984 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (721)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~ 619 (721)
+++|++.. +...++.+.....++++| +..++++++.+|.++.+++++|.++..+|+
T Consensus 153 ~~~~~~~~------~~~~l~~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 208 (243)
T 2q7f_A 153 ELNENDTE------ARFQFGMCLANEGMLDEA------------------LSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208 (243)
T ss_dssp HHCTTCHH------HHHHHHHHHHHHTCCHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HhCCccHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHccC
Confidence 77776632 223333333333333333 667777777778888889999999999999
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (721)
Q Consensus 620 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~ 653 (721)
+++|+..++++++++|++..++..++.+....|+
T Consensus 209 ~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999988766654
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=5.4e-21 Score=193.82 Aligned_cols=221 Identities=14% Similarity=0.034 Sum_probs=189.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcC----CCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984 425 GYIKGHKLWAYEKLNSVISSV----TPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (721)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~----~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~ 496 (721)
....|++++|+..|.++++.. |+.+.++..+|. .++.++|+..|++|++++|+++.+|.++|.++..+|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 445689999999999999974 456677777764 366699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHH
Q 004984 497 AALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 575 (721)
Q Consensus 497 eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~ 575 (721)
+|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++..... ... +.....++++|
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------~~~-~~~~~~~~~~A---- 163 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL------WLY-LAEQKLDEKQA---- 163 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------HHH-HHHHHHCHHHH----
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH------HHH-HHHHhcCHHHH----
Confidence 999999999999996 788899999999999999999999999999999853221 111 11222444444
Q ss_pred hhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHhc
Q 004984 576 QLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYDT 651 (721)
Q Consensus 576 ~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~Ly~~ 651 (721)
+..+.+++...|.+...+. .+..+...+..++|+..++++++.+|.. +++++++|.+++.+
T Consensus 164 --------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 164 --------------KEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 228 (275)
T ss_dssp --------------HHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------HHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence 7889999999999988765 7777788888999999999999998854 89999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCH
Q 004984 652 SHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 652 G~~deAl~~ye~Ai~i~~~~ 671 (721)
|++++|+..|+++++++|+.
T Consensus 229 g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 229 GDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp TCHHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHhCCchh
Confidence 99999999999999999954
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=207.44 Aligned_cols=303 Identities=11% Similarity=0.018 Sum_probs=228.6
Q ss_pred HHHhhhcCCCCchhHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--------chhhHhhH
Q 004984 351 LSEVAMNLDPRSDKTVCFLERLLESAETDR-QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--------HIYSIAGL 421 (721)
Q Consensus 351 l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~l-q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--------~~~A~~~l 421 (721)
+..+.... .+.+....++++++...+... ....+++.+|.++...|++++|+..|++|+++. ...++..+
T Consensus 15 ~g~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 15 EGERLCKS-GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHh-ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33343333 356678888888877544332 235678999999999999999999999998771 24467889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC-------------cHHHHHHHhhcCC-----------------hhHHHHHHHHH
Q 004984 422 ARLGYIKGHKLWAYEKLNSVISSVTP-------------LGWMYQERSLYCE-----------------GDKRWEDLDKA 471 (721)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~~~-------------~~~ay~~rg~~~~-----------------~~eAl~d~~kA 471 (721)
|.++...|++++|+..+.++++..+. .|.+|...|++.. .++|+..|++|
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999987543 3455555555000 39999999999
Q ss_pred Hhc------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 472 TAL------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L------ECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 472 ieL------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~------~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
+++ .|..+.+|.++|.++..+|++++|+..|++++++.|. . ..+.++|.++..+|++++|+..|+++
T Consensus 174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 998 6666789999999999999999999999999998653 2 25677899999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHH
Q 004984 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSL 612 (721)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~------~~~~~~~g~ 612 (721)
+++.|+.........+...++.+.....++++| +..+++++++.|.. +.++.++|.
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA------------------IDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH------------------HHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999887643333444555556555566666666 77889999887665 678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCHH
Q 004984 613 LLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEE-GLRKAEESIQMKRSFE 672 (721)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P------~~~ea~~~~G~~Ly~~G~~de-Al~~ye~Ai~i~~~~~ 672 (721)
++..+|++++|+..+++|+++.+ ....++..+|.++..+|+..+ +....++...++.+.+
T Consensus 316 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 382 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999944 457899999999999998754 3334444444555443
No 55
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.87 E-value=2.8e-22 Score=186.04 Aligned_cols=102 Identities=22% Similarity=0.403 Sum_probs=97.1
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEe-CCCCCCHHHHHHHhhhhccCCCCCCCHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDL-SENNISPSGLRIISDFSVTGSLNGVTPN 253 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l-~~~~is~~~~~~lL~f~Ytg~l~~i~~~ 253 (721)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.++|.| ....|+| + ++++++|+.+|+|+|||++. ++.+
T Consensus 23 l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~--~~~~~~f~~ll~~~Ytg~~~-~~~~ 98 (127)
T 1r29_A 23 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDP--EINPEGFNILLDFMYTSRLN-LREG 98 (127)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCT--TSCHHHHHHHHHHHHHSCCC-CCTT
T ss_pred HHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCC--CCCHHHHHHHHHHHcCCCcC-cCHH
Confidence 4468889999999999999999999999999999999999999 7789999 6 59999999999999999999 9999
Q ss_pred HHHHHHHHhhhcChhhHHHHHHHHHHh
Q 004984 254 LLLEILIFANKFCCERLKDACDRKLAS 280 (721)
Q Consensus 254 ~v~~LL~aAd~~~v~~L~~~C~~~L~~ 280 (721)
++.+|+.+|++|+++.|++.|+++|.+
T Consensus 99 ~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 99 NIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999975
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.86 E-value=6e-20 Score=184.61 Aligned_cols=188 Identities=14% Similarity=0.029 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..++.++..+|++++|+..|+++++
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 55555555666666666666666666666666666666666666666663 55555566666666666666666666666
Q ss_pred --hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004984 541 --LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (721)
Q Consensus 541 --L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (721)
.+|++. .+...++.+.....++++| +..++++++.+|.++.+++.+|.++..+|
T Consensus 134 ~~~~~~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 134 DTLYPERS------RVFENLGLVSLQMKKPAQA------------------KEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp CTTCTTHH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred CccCcccH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 444432 1222333333333334433 55666666667777778889999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 004984 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (721)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a 673 (721)
++++|+..++++++.+|++.+++..+|.++..+|++++|...+++++++.|+...
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999999999999999999999999999999998773
No 57
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.2e-18 Score=195.29 Aligned_cols=319 Identities=10% Similarity=-0.074 Sum_probs=223.4
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHH
Q 004984 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLL----RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLW 433 (721)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~----~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~----~G~~~~ 433 (721)
.+....+++++.+. ....+++.+|..+.. .+++++|+.+|++|++.++..+++.+|.++.. .+++++
T Consensus 59 ~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 44566666665443 235677888888888 78888888888888888888888888888887 788888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhh--------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHH
Q 004984 434 AYEKLNSVISSVTPLGWMYQERSL--------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAE 501 (721)
Q Consensus 434 A~~~~~~aI~~~~~~~~ay~~rg~--------~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~ 501 (721)
|+.+|.++++.. .+.++++.|. -.+.++|+..|++|++. +++.+++++|.+|.. .+++++|+..
T Consensus 134 A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 134 SVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 888888887753 4455555543 23458888888888876 578888888888887 7888888888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHH--
Q 004984 502 INRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIA-- 571 (721)
Q Consensus 502 ~~kAL~l~P~~~~~~~R~~~~~~----lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A-- 571 (721)
|+++++.. ++...+.+|.++.. .+++++|+..|+++++..+... ...++.+... ..++++|
T Consensus 210 ~~~a~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a--------~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 210 YRKSATSG-DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIA--------QFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHH--------HHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHCCCCCCCCHHHHHH
Confidence 88888653 46666777777776 7888888888888887644321 1111111111 1222222
Q ss_pred -----------HHHHhhhhccccc-----cccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHH
Q 004984 572 -----------DCWLQLYDRWSSV-----DDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLAR 631 (721)
Q Consensus 572 -----------~~~~~l~~~~~~~-----dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg---~~eeAl~~~~~Al 631 (721)
+++..+....... .+.. |+..++++++. +++.+++++|.++...| ++++|+..|++|+
T Consensus 281 ~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 281 WYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 1222222222221 3444 78888888876 56788999999998877 7888999999998
Q ss_pred HhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984 632 QHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 632 ~l~P~~~ea~~~~G~~Ly~----~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (721)
+. +++++++++|++++. .+++++|+..|++|++.. +..|+++.|..+....--+..-..-+..++.|+.
T Consensus 359 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 359 AK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 87 678999999999998 899999999999998875 4568888898887632123333445556666653
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=2.1e-20 Score=186.60 Aligned_cols=168 Identities=10% Similarity=0.083 Sum_probs=116.0
Q ss_pred ChhHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 460 EGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 460 ~~~eAl~d~~kAieLdP-~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
++++|+..|++|++++| .+..+++++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|++
T Consensus 22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 101 (228)
T 4i17_A 22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTE 101 (228)
T ss_dssp CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33666666666666666 66666666666666666666666666666666665 45555566666666666666666666
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 004984 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (721)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (721)
+++++|++..+. .. -+.+|+++|.++..+
T Consensus 102 al~~~p~~~~~~------~~---------------------------------------------~~~~~~~~g~~~~~~ 130 (228)
T 4i17_A 102 GIKAVPGNATIE------KL---------------------------------------------YAIYYLKEGQKFQQA 130 (228)
T ss_dssp HHHHSTTCHHHH------HH---------------------------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHCCCcHHHH------HH---------------------------------------------HHHHHHHHhHHHHHh
Confidence 666666652100 00 014677888888888
Q ss_pred CChHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhcCCH---------------------------HHHHHHHHHHHhcC
Q 004984 618 NCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHC---------------------------EEGLRKAEESIQMK 668 (721)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~Ly~~G~~---------------------------deAl~~ye~Ai~i~ 668 (721)
|++++|+..|++|++++|+ ++++++++|.+++.+|+. ++|+..|++|++++
T Consensus 131 ~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 131 GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888888888888888888 888888888888888887 99999999999999
Q ss_pred CCHH-HHHHHH
Q 004984 669 RSFE-AFFLKA 678 (721)
Q Consensus 669 ~~~~-a~~~~~ 678 (721)
|+.. +..+.+
T Consensus 211 p~~~~~~~~l~ 221 (228)
T 4i17_A 211 PNRTEIKQMQD 221 (228)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 9987 544443
No 59
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.86 E-value=2.2e-22 Score=189.78 Aligned_cols=105 Identities=17% Similarity=0.252 Sum_probs=98.0
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.|+ ..|++++ ++++++|+.+|+|+|||++. ++.++
T Consensus 30 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~-~v~~~~~~~lL~~~Ytg~~~-i~~~~ 105 (138)
T 2z8h_A 30 QRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPE-EVTVKGFEPLIQFAYTAKLI-LSKDN 105 (138)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCT-TSCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCC-CCCHHHHHHHHHHhcCCCcc-cCHHH
Confidence 44678899999999999999999999999999999999999774 5788863 69999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984 255 LLEILIFANKFCCERLKDACDRKLASLVA 283 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (721)
+.+|+.+|++|+++.|++.|++||.+.++
T Consensus 106 v~~ll~~A~~~~i~~L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 106 VDEVCRCVEFLSVHNIEESCFQFLKFKFL 134 (138)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999885
No 60
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=2.9e-18 Score=192.16 Aligned_cols=289 Identities=10% Similarity=-0.051 Sum_probs=197.4
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHH
Q 004984 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLL----RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLW 433 (721)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~----~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~----~G~~~~ 433 (721)
.+....+++++... ....+.+++|..+.. .+++++|+.+|++|++.++..++..+|.+|.. .+++++
T Consensus 95 ~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 95 YAQAVIWYKKAALK-----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34555666664432 134566677777776 67777777777777777777777777777776 677777
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhh--------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHH
Q 004984 434 AYEKLNSVISSVTPLGWMYQERSL--------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAE 501 (721)
Q Consensus 434 A~~~~~~aI~~~~~~~~ay~~rg~--------~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~ 501 (721)
|+.+|.++++.. .+.++.+.|. .++.++|+..|++|++. +++.+++++|.+|.. .+++++|+..
T Consensus 170 A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 170 AREWYSKAAEQG--NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 777777777653 4444444442 23447777777777764 456777777777776 6777777777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh-----hhhhHHH
Q 004984 502 INRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-----DNWTIAD 572 (721)
Q Consensus 502 ~~kAL~l~P~~~~~~~R~~~~~~----lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~-----~~~~~A~ 572 (721)
|+++++.. ++...+.+|.++.. .+|+++|+..|+++++.++.. +...++.+.... .++++|.
T Consensus 246 ~~~a~~~~-~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~--------a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 246 FSQSAEQG-NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSD--------GQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHTTT-CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHcCCCCCcCCHHHHH
Confidence 77777542 35556667777766 777777777777777653322 111111111111 2222222
Q ss_pred -------------HHHhhhhcccc---ccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 004984 573 -------------CWLQLYDRWSS---VDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLAR 631 (721)
Q Consensus 573 -------------~~~~l~~~~~~---~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al 631 (721)
++..++..... ..+.. |+..++++++. +++.+++++|.++.. .+++++|+..|++|+
T Consensus 317 ~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 317 SWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 22222222211 11333 78899999987 789999999999999 999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHH
Q 004984 632 QHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 632 ~l~P~~~ea~~~~G~~Ly~----~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+.. ++++++++|++++. .|++++|+..|++|+++.|+..
T Consensus 395 ~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 395 EQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred hCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 864 79999999999999 9999999999999999998743
No 61
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.85 E-value=4.7e-22 Score=189.16 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=91.8
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCc--CCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFME--SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~E--s~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~ 252 (721)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.++|.| +...+|.|+ ++++++|+.+|+|+|||++. ++.
T Consensus 41 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~--~v~~~~f~~lL~fiYtg~~~-i~~ 117 (144)
T 2ppi_A 41 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNE 117 (144)
T ss_dssp TTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECC--SSCHHHHHHHHHHHTTSCCC-CCT
T ss_pred HHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeC--CCCHHHHHHHHHHHhCCCCC-CCH
Confidence 5678999999999999999999999999999999999999876 667889998 49999999999999999999 999
Q ss_pred HHHHHHHHHhhhcChhhHHHHHHHHHH
Q 004984 253 NLLLEILIFANKFCCERLKDACDRKLA 279 (721)
Q Consensus 253 ~~v~~LL~aAd~~~v~~L~~~C~~~L~ 279 (721)
+++.+|+.+|++|+++.|++.|++||.
T Consensus 118 ~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 118 DTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 999999999999999999999998863
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.85 E-value=9e-21 Score=204.68 Aligned_cols=267 Identities=12% Similarity=-0.050 Sum_probs=219.9
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcH----HHHHHHhh----cCChhHHHHHHHHHHhc------CCCChH
Q 004984 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLG----WMYQERSL----YCEGDKRWEDLDKATAL------DPTLSY 480 (721)
Q Consensus 415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~----~ay~~rg~----~~~~~eAl~d~~kAieL------dP~~~~ 480 (721)
...+..+|..+...|++++|+..|+++++..|+.. .+|..+|. .++.++|+..|++|+++ +|..+.
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 33456789999999999999999999999998864 56666664 26669999999999999 799999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 004984 481 PYMYRASSLMTKQNVEAALAEINRILGF------KLA-LECLELRFCFFLALED-----------------YQAALCDVQ 536 (721)
Q Consensus 481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l------~P~-~~~~~~R~~~~~~lgd-----------------~eeAl~d~~ 536 (721)
+|.++|.++..+|++++|+..|++++++ .|. ...+.++|.++..+|+ +++|+..|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999998 343 4567789999999999 999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh------HHHHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV------LYFRQ 610 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~------~~~~~ 610 (721)
+++++.+..........+...++.+.....++++| +..+++++++.|.... +++++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~l 269 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA------------------IEHHQERLRIAREFGDRAAERRANSNL 269 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHH------------------HHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99987654322222334555555555555555555 7889999999887766 99999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHH
Q 004984 611 SLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFLK 677 (721)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~-------~a~~~~ 677 (721)
|.++..+|++++|+..+++|+++.|.. +.++.++|.++..+|++++|+..|++++++.+.. .+++..
T Consensus 270 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 349 (411)
T 4a1s_A 270 GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSL 349 (411)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999999999999999999999966 7899999999999999999999999999986554 288888
Q ss_pred HHHhhccCCCCCchhhHHHHHHHhhc
Q 004984 678 AYALADSSQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (721)
|.++...+ --..-+..+++|++
T Consensus 350 a~~~~~~g----~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 350 GNAHSAIG----GHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTT----CHHHHHHHHHHHHH
T ss_pred HHHHHHhc----cHHHHHHHHHHHHH
Confidence 88877654 23455677777765
No 63
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.85 E-value=4e-22 Score=183.23 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=91.3
Q ss_pred cCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHH
Q 004984 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (721)
Q Consensus 176 ~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v 255 (721)
.+++.+|||+|+++|++|+|||.|||++|+||++||.+++ +.+|+|+ ++++++|+.+++|+|||+++ ++.+++
T Consensus 19 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~--~~~~~~f~~ll~~iYtg~~~-~~~~~v 91 (119)
T 3b84_A 19 REKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGNR 91 (119)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred HhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHHH
Confidence 4578899999999999999999999999999999999987 5789999 49999999999999999999 999999
Q ss_pred HHHHHHhhhcChhhHHHHHHHHHHh
Q 004984 256 LEILIFANKFCCERLKDACDRKLAS 280 (721)
Q Consensus 256 ~~LL~aAd~~~v~~L~~~C~~~L~~ 280 (721)
.+++.+|++|+++.|++.|++||.+
T Consensus 92 ~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 92 DQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 64
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.85 E-value=1.3e-19 Score=193.36 Aligned_cols=227 Identities=7% Similarity=-0.100 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHhhc----C--ChhHHHHHHHHHHhcCCCChHHHHHHHHHH----Hhc---CCHHHH
Q 004984 432 LWAYEKLNSVISSVTPLGWMYQERSLY----C--EGDKRWEDLDKATALDPTLSYPYMYRASSL----MTK---QNVEAA 498 (721)
Q Consensus 432 ~~A~~~~~~aI~~~~~~~~ay~~rg~~----~--~~~eAl~d~~kAieLdP~~~~ay~~rg~~l----~~l---g~~~eA 498 (721)
++|++.+.++|.++|++..+|..||.+ + ..++++..++++|.++|++..+|++|+.++ ..+ ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 467777777777777777777777642 4 668899999999999999999999999999 767 789999
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh------hh
Q 004984 499 LAEINRILGFKLA-LECLELRFCFFLALEDYQ--AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN------WT 569 (721)
Q Consensus 499 l~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e--eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~------~~ 569 (721)
++.++++|+.+|. +.+|+.|++++..+|+++ +++..+++++++||.|.. +.+.++.+...... ++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s------AW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS------AWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhccccchhhhHH
Confidence 9999999999994 888999999999999988 999999999999998832 33333333222222 22
Q ss_pred HHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHH-HHHHHHHHHHhC---CCChhHHHHHH
Q 004984 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA-AMRSLQLARQHA---ASDHERLVYEG 645 (721)
Q Consensus 570 ~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee-Al~~~~~Al~l~---P~~~ea~~~~G 645 (721)
+ ++..++++|..+|++..+|++++.++.++|+..+ ....+.+++.++ |.+..|+..++
T Consensus 204 e------------------El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 204 E------------------ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp H------------------HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred H------------------HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 2 4889999999999999999999999999999666 445777788887 99999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-cCCCHH-HHHHHHHHhh
Q 004984 646 WILYDTSHCEEGLRKAEESIQ-MKRSFE-AFFLKAYALA 682 (721)
Q Consensus 646 ~~Ly~~G~~deAl~~ye~Ai~-i~~~~~-a~~~~~~~~~ 682 (721)
-++.++|+.++|+..|+++++ ++|--. .|..|+-.|.
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l~ 304 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKLT 304 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTCC
T ss_pred HHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhcc
Confidence 999999999999999999997 899988 7777775543
No 65
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.85 E-value=7e-20 Score=197.06 Aligned_cols=225 Identities=14% Similarity=0.124 Sum_probs=186.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC--H
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALED--Y 528 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd--~ 528 (721)
++|+..++++|.+||++..+|++|+.++..+++ +++++..++++|..+|. +..|+.|++++..+|+ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 689999999999999999999999999998887 68999999999999995 8999999999999994 9
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh-hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 004984 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (721)
Q Consensus 529 eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~-~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~ 607 (721)
++++..++++++++|.|.. +...++-+...... +++ ++..++++|+.+|+|..+|
T Consensus 127 ~~EL~~~~k~l~~dprNy~------AW~~R~~vl~~l~~~~~e------------------el~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 127 ARELELCARFLEADERNFH------CWDYRRFVAAQAAVAPAE------------------ELAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCCHHH------------------HHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhCcCHHH------------------HHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999843 22222222222222 222 4889999999999999999
Q ss_pred HHHHHHHHHc--------------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHH
Q 004984 608 FRQSLLLLRL--------------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-----------SHCEEGLRKAE 662 (721)
Q Consensus 608 ~~~g~~L~~l--------------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~-----------G~~deAl~~ye 662 (721)
++++.++..+ +.++++++.+.+|+..+|+|..+++|+.|++... +.++++++.++
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 9999999998 5689999999999999999999999998888887 56899999999
Q ss_pred HHHhcCCCHHHHHHHHHHhhccCCCCCchh-hHHHHHHHhhcCCCCcccccc
Q 004984 663 ESIQMKRSFEAFFLKAYALADSSQDSSCSS-TVVSLLEDALKCPSDRLRKGT 713 (721)
Q Consensus 663 ~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 713 (721)
+.+++.|++ .|.+++.++....+||.... .+.+.|+...+ =|-+|||-
T Consensus 263 elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~ 311 (331)
T 3dss_A 263 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAY 311 (331)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHH
T ss_pred HHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhH
Confidence 999999998 89999999887777765332 45556665553 48888873
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=3e-19 Score=174.65 Aligned_cols=204 Identities=10% Similarity=-0.040 Sum_probs=128.9
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 004984 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (721)
Q Consensus 415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~ 494 (721)
..++..+|.++...|++++|+..+.++++..| +++.+|..+|.++..+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~~~ 57 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP------------------------------KNELAWLVRAEIYQYLKV 57 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------------------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc------------------------------cchHHHHHHHHHHHHcCC
Confidence 44555666666666666666665555555544 444455555555555555
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 004984 495 VEAALAEINRILGFKLA-LECLELRFCFFLAL-EDYQAALCDVQAILT--LSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (721)
Q Consensus 495 ~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l-gd~eeAl~d~~kal~--L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~ 570 (721)
+++|+..|+++++++|+ ...+..+|.++..+ |++++|+..|+++++ .+|++ ..+....+.+.....++++
T Consensus 58 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP------YIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH------HHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch------HHHHHHHHHHHHHcCCHHH
Confidence 55555555555555543 34444444555555 555555555555555 22221 1122222222222333333
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHH
Q 004984 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-SDHERLVYEGWILY 649 (721)
Q Consensus 571 A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P-~~~ea~~~~G~~Ly 649 (721)
| +..++++++.+|.++.+++++|.++..+|++++|+..++++++++| ++..++...+.++.
T Consensus 132 A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (225)
T 2vq2_A 132 A------------------EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK 193 (225)
T ss_dssp H------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred H------------------HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3 4455555555566667788899999999999999999999999999 99999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCHH
Q 004984 650 DTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 650 ~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
..|+.++|...+++++.+.|+..
T Consensus 194 ~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 194 ALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hcCcHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999877
No 67
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.84 E-value=2e-21 Score=179.02 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=93.1
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+..++.+|||+|+++|++|+|||.|||++|+||++||.++ ..+|+|+ ++++++|+.+++|+|||+++ ++.++
T Consensus 22 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-~~~~~ 93 (121)
T 1buo_A 22 MRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLD--FLSPKTFQQILEYAYTATLQ-AKAED 93 (121)
T ss_dssp HHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred HHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeC--CCCHHHHHHHHHhhcCCCcC-CCHHH
Confidence 4467889999999999999999999999999999999875 4689998 49999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHHhhc
Q 004984 255 LLEILIFANKFCCERLKDACDRKLASLV 282 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l 282 (721)
+.+++.+|++|+++.|++.|+++|.+.+
T Consensus 94 ~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 94 LDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998753
No 68
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=178.26 Aligned_cols=99 Identities=21% Similarity=0.313 Sum_probs=91.2
Q ss_pred cCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHH
Q 004984 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (721)
Q Consensus 176 ~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v 255 (721)
..++.+|||+|+|+|++|+|||.|||++|+||++||.++ .+..|.|+.+++++++|+.+++|+|||++. ++.+++
T Consensus 17 ~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~-~~~~~v 91 (116)
T 2vpk_A 17 REAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLN-LDSWNV 91 (116)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred HhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc-cCHHHH
Confidence 457789999999999999999999999999999999987 356788873349999999999999999999 999999
Q ss_pred HHHHHHhhhcChhhHHHHHHHHHH
Q 004984 256 LEILIFANKFCCERLKDACDRKLA 279 (721)
Q Consensus 256 ~~LL~aAd~~~v~~L~~~C~~~L~ 279 (721)
.+++.+|++|+++.|++.|+++|.
T Consensus 92 ~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 92 KEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999985
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.84 E-value=6.5e-19 Score=172.31 Aligned_cols=210 Identities=11% Similarity=-0.067 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcC
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~ 459 (721)
...+++.+|..+...|++++|+..|+++++..+ ..++..+|.++...|++++|+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---------------------- 64 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES---------------------- 64 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----------------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHH----------------------
Confidence 467788999999999999999999999999854 45677778888777776666555
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--cCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTK-QNVEAALAEINRILG--FKLA-LECLELRFCFFLALEDYQAALCDV 535 (721)
Q Consensus 460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l-g~~~eAl~~~~kAL~--l~P~-~~~~~~R~~~~~~lgd~eeAl~d~ 535 (721)
|+++++++|+++.+|.++|.++... |++++|+..|+++++ .+|+ ...+..+|.++..+|++++|+..|
T Consensus 65 --------~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 65 --------FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp --------HHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------HHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556666666667777777777777 777777777777777 4443 455566677777777777777777
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC-CChhHHHHHHHHH
Q 004984 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA-PKGVLYFRQSLLL 614 (721)
Q Consensus 536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P-~~~~~~~~~g~~L 614 (721)
+++++++|++.. +...++.+.....++++| +..++++++.+| .++..+...+.++
T Consensus 137 ~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T 2vq2_A 137 KRSLAAQPQFPP------AFKELARTKMLAGQLGDA------------------DYYFKKYQSRVEVLQADDLLLGWKIA 192 (225)
T ss_dssp HHHHHHSTTCHH------HHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCch------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 777777777622 333333333334444444 666777777777 7777888888899
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 004984 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (721)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (721)
...|+.++|...++.+++.+|+++++...+.
T Consensus 193 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 193 KALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 9999999999999999999999998876653
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=8.5e-20 Score=192.38 Aligned_cols=247 Identities=9% Similarity=-0.022 Sum_probs=156.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-------ccch-------HHHHHHHHHHHh-ccc--hhhHhhHHHHHHH
Q 004984 365 TVCFLERLLESAETDRQRLLAFHQLGCVRLL-------RKEY-------DEAEHLFEAAVN-AGH--IYSIAGLARLGYI 427 (721)
Q Consensus 365 ~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~-------~g~y-------~eA~~~f~~AL~-~~~--~~A~~~lg~~~~~ 427 (721)
+...+++++...+. ...+++++|..+.. .|++ ++|+..|++||+ ++| ..++..+|.++..
T Consensus 35 a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 35 VMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34577777764442 25677777777654 4664 777777777777 443 3345556666655
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 428 KGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY-PYMYRASSLMTKQNVEAALAEINRIL 506 (721)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~-ay~~rg~~l~~lg~~~eAl~~~~kAL 506 (721)
+|++ ++|...|++|++++|+++. +|.++|.++.++|++++|+..|++|+
T Consensus 112 ~~~~------------------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 112 RMKY------------------------------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp TTCH------------------------------HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCCH------------------------------HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5555 4555556666666666665 67777777777777777777777777
Q ss_pred hcCCC-HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 004984 507 GFKLA-LECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (721)
Q Consensus 507 ~l~P~-~~~~~~R~~~~-~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 584 (721)
+++|. ...+...+.+. ..+|++++|+..|+++++++|++.. +....+.+.....+.++
T Consensus 162 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~g~~~~-------------- 221 (308)
T 2ond_A 162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE------YVLAYIDYLSHLNEDNN-------------- 221 (308)
T ss_dssp TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHTTCCHHH--------------
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHCCCHHH--------------
Confidence 77664 44443333332 2267777777777777777777622 22222222222223333
Q ss_pred cccchHHHHHHHHHh---CC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004984 585 DDIGSLSVIYQMLES---DA-PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (721)
Q Consensus 585 dd~~al~~~~qaL~l---~P-~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ 660 (721)
|...|+++++. +| .+..+|.+.+..+...|+.++|...+++|+++.|++.+-... +.+ ..
T Consensus 222 ----A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~-~~~-----------~~ 285 (308)
T 2ond_A 222 ----TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKET-ALL-----------VD 285 (308)
T ss_dssp ----HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHH-HHH-----------HT
T ss_pred ----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchH-HHH-----------HH
Confidence 36677777774 44 367788888999999999999999999999999987754421 221 12
Q ss_pred HHHHHhcCCCHH-HHHHHHHH
Q 004984 661 AEESIQMKRSFE-AFFLKAYA 680 (721)
Q Consensus 661 ye~Ai~i~~~~~-a~~~~~~~ 680 (721)
-.+.+.++|... +.+.-||+
T Consensus 286 r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 286 RYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp TTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHhcccCCCCHHHHHhcCCC
Confidence 226777888887 76667765
No 71
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.84 E-value=4.1e-19 Score=178.50 Aligned_cols=209 Identities=14% Similarity=-0.016 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcC
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~ 459 (721)
...+++.+|..+...|++++|+..|+++++.+ ...++..+|.++...|++++|++.+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~--------------------- 94 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEY--------------------- 94 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHH---------------------
Confidence 36777888999999999999999999988874 3455667777777777766665554
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~--l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
+++++++|+++.+|.++|.++...|++++|+..|+++++ .+|. +..+..+|.++..+|++++|+..|+
T Consensus 95 ---------~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 95 ---------RKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp ---------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------HHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555666666666666666666666666666666666 5554 4455556666666666666666666
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (721)
++++++|++. .+...++.+.....++++| +..++++++.+|.++.++..++.++..
T Consensus 166 ~~~~~~~~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 166 KSLRLNRNQP------SVALEMADLLYKEREYVPA------------------RQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHCSCCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHhcCcccH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 6666666652 2233333333333444444 556666677777777788889999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHH
Q 004984 617 LNCPEAAMRSLQLARQHAASDHERLVYE 644 (721)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (721)
+|++++|++.+++++++.|++.++...+
T Consensus 222 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 222 FEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp TTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999876543
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=1.7e-20 Score=221.92 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh--
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~-- 457 (721)
.+.+++++|.++..+|++++|++.|++||+++ +..++.++|.++..+|++++|++.|++||+++|+++.+|.++|.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 47889999999999999999999999999995 56688999999999999999999999999999999999999985
Q ss_pred --cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004984 458 --YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (721)
Q Consensus 458 --~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d 534 (721)
.++.++|++.|++|++++|+++.+|+++|.+|.++|++++|++.|++||+++|+ +..+.++|.++..+|++++|++.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999997 88899999999999999999999
Q ss_pred HHHHHhhCCCc
Q 004984 535 VQAILTLSPDY 545 (721)
Q Consensus 535 ~~kal~L~P~~ 545 (721)
|++++++.|+.
T Consensus 168 ~~kal~l~~~~ 178 (723)
T 4gyw_A 168 MKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhChhH
Confidence 99999998775
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=1.2e-19 Score=181.20 Aligned_cols=202 Identities=9% Similarity=-0.066 Sum_probs=140.5
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 004984 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (721)
Q Consensus 417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~-~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~ 491 (721)
++..+|.++..+|++++|+..|+++++..| +...+++++|. .++.++|+..|++|++++|+++.+|.++|.++..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 344444444444444444444444444444 33344444432 1344677777888888999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--chhhhhhHHHHHHHHHH
Q 004984 492 KQNVEAALAEINRILGFKLA-L-------ECLELRFCFFLALEDYQAALCDVQAILTLSPD--YRMFEGRVAASQLHMLV 561 (721)
Q Consensus 492 lg~~~eAl~~~~kAL~l~P~-~-------~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~--~~~~~~~~~a~~~~~~l 561 (721)
+|++++|+..|+++++++|+ + ..+..+|.++..+|++++|+..|+++++++|+ +..+ ...++.+
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------~~~l~~~ 162 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA------LYSLGVL 162 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH------HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH------HHHHHHH
Confidence 99999999999999999996 5 44777888999999999999999999999998 6332 2222211
Q ss_pred HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (721)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (721)
... .. ...++++..+.+.+...+ .+......+.+++|+..+++|++++|++.++.
T Consensus 163 ~~~-----~~------------------~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 217 (228)
T 4i17_A 163 FYN-----NG------------------ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIK 217 (228)
T ss_dssp HHH-----HH------------------HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHH-----HH------------------HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 100 01 123566666666664443 55566778889999999999999999999999
Q ss_pred HHHHHHHH
Q 004984 642 VYEGWILY 649 (721)
Q Consensus 642 ~~~G~~Ly 649 (721)
..++.+.-
T Consensus 218 ~~l~~i~~ 225 (228)
T 4i17_A 218 QMQDQVKA 225 (228)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 98888754
No 74
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.84 E-value=8.6e-22 Score=185.18 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=90.0
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++ ..+|+|++ +++++|+.+|+|+|||++. ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~--~~~~~f~~lL~fiYtg~~~-i~~~~ 91 (135)
T 2yy9_A 19 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPA--GFAEIFGLLLDFFYTGHLA-LTSGN 91 (135)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECG--GGHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCC--CCHHHHHHHHHHHhCCCCC-CCHHH
Confidence 45688899999999999999999999999999999999987 56799984 9999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984 255 LLEILIFANKFCCERLKDACDRKLASLVA 283 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (721)
+.+|+.+|++|+++.|++.|+++|.+.+.
T Consensus 92 v~~ll~~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 92 RDQVLLAAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999988764
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=3.7e-20 Score=194.11 Aligned_cols=199 Identities=10% Similarity=0.001 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhc-CC
Q 004984 462 DKRWEDLDKATALDPT------LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLAL-ED 527 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~------~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~l-gd 527 (721)
++|+..|++|+++.+. .+.+|.++|.+|..+|++++|+..|++||++.|. ...+.+.|.+|... |+
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~ 133 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD 133 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 4444445555444321 1456666777777777777777777777766542 12345566666664 77
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh--
Q 004984 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV-- 605 (721)
Q Consensus 528 ~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~-- 605 (721)
+++|+..|++|+++.|+.........+...++.+.....++++| +..++++++++|.+..
T Consensus 134 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA------------------SDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHhcCCccc
Confidence 77777777777776664311111122333333333444444444 6667777777666554
Q ss_pred -----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH-----HHHHHHHH--hcCCHHHHHHHHHHHHhcCCCHHH
Q 004984 606 -----LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL-----VYEGWILY--DTSHCEEGLRKAEESIQMKRSFEA 673 (721)
Q Consensus 606 -----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~-----~~~G~~Ly--~~G~~deAl~~ye~Ai~i~~~~~a 673 (721)
+++++|.++..+|++++|+..|+++++++|+..++. ..++..+- +.+++++|+..|++++.++|.+.-
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 678999999999999999999999999999987753 33444443 568899999999999999999876
Q ss_pred HHHHH
Q 004984 674 FFLKA 678 (721)
Q Consensus 674 ~~~~~ 678 (721)
..+|.
T Consensus 276 ~~~~~ 280 (292)
T 1qqe_A 276 ILNKI 280 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 76
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=2e-20 Score=219.81 Aligned_cols=199 Identities=10% Similarity=-0.052 Sum_probs=159.6
Q ss_pred hcCCCcHHHHHHHh-hcCChhHHHHHHHHHH--------hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 004984 443 SSVTPLGWMYQERS-LYCEGDKRWEDLDKAT--------ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L 512 (721)
Q Consensus 443 ~~~~~~~~ay~~rg-~~~~~~eAl~d~~kAi--------eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~ 512 (721)
..+|+++.+++.++ ..++.++|++.|++|+ +++|+++.+|.++|.++.++|++++|+..|+++++++|+ +
T Consensus 388 ~~~p~~~~a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 467 (681)
T 2pzi_A 388 LVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW 467 (681)
T ss_dssp CCCTTSTTHHHHHHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred cCCCCCcchHHhhcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence 34677776666665 3466699999999999 999999999999999999999999999999999999996 8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 004984 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (721)
Q Consensus 513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~ 592 (721)
..++++|.++..+|++++|+.+|++|++++|++.. +...++.+..... +++.+..
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~lg~~~~~~g-------------------~~~~~~~ 522 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA------PKLALAATAELAG-------------------NTDEHKF 522 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH------HHHHHHHHHHHHT-------------------CCCTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHcC-------------------ChHHHHH
Confidence 88999999999999999999999999999999844 2233322222222 2222447
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 004984 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQ 666 (721)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA-l~~ye~Ai~ 666 (721)
|+++|+++|.++.+|+++|.++.++|++++|++.|++|++++|+++++++++|.+++..|+.+++ ...+++|++
T Consensus 523 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 597 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAAR 597 (681)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999887774444 444444443
No 77
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.83 E-value=3.5e-22 Score=184.97 Aligned_cols=101 Identities=19% Similarity=0.286 Sum_probs=90.4
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.|+ ..|++++ ++++++|+.+|+|+|||++. ++.++
T Consensus 23 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~-~v~~~~f~~lL~~iYtg~~~-i~~~~ 98 (124)
T 2ihc_A 23 QRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPE-EVTVKGFEPLIQFAYTAKLI-LSKEN 98 (124)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCT-TSCHHHHHHHHHHHHHSEEE-EETTT
T ss_pred HHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecC-CcCHHHHHHHHHHhcCCCcc-cCHHH
Confidence 34677899999999999999999999999999999999999775 5788853 69999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHH
Q 004984 255 LLEILIFANKFCCERLKDACDRKLA 279 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~ 279 (721)
+.+|+.+|++|+++.|++.|++||.
T Consensus 99 v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 99 VDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999999999874
No 78
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.83 E-value=4.9e-20 Score=189.84 Aligned_cols=266 Identities=14% Similarity=-0.031 Sum_probs=214.7
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHhh----cCChhHHHHHHHHHHhc------CCCChHHH
Q 004984 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPL----GWMYQERSL----YCEGDKRWEDLDKATAL------DPTLSYPY 482 (721)
Q Consensus 417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~----~~ay~~rg~----~~~~~eAl~d~~kAieL------dP~~~~ay 482 (721)
.+...|..+...|++++|+..|+++++..|+. +.++..+|. .++.++|+..|++|+++ .|..+.+|
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 45667999999999999999999999999876 456666654 35669999999999999 77778999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 004984 483 MYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALED--------------------YQAALCDV 535 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd--------------------~eeAl~d~ 535 (721)
..+|.++..+|++++|+..+++++++.|. ...+..+|.++..+|+ +++|+..|
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999998652 2256778999999999 99999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh------HHHH
Q 004984 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV------LYFR 609 (721)
Q Consensus 536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~------~~~~ 609 (721)
++++++.+..........+....+.+.....++++| +..+++++++.|.... ++++
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA------------------VIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999987543222222233455555555555555555 7788888888776555 9999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHH
Q 004984 610 QSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFL 676 (721)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~-------~a~~~ 676 (721)
+|.++..+|++++|+..+++++++.|.. +.++.++|.++..+|++++|+..+++|+++.|.. .+++.
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 308 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999999999999998887 8899999999999999999999999999986654 27778
Q ss_pred HHHHhhccCCCCCchhhHHHHHHHhhcC
Q 004984 677 KAYALADSSQDSSCSSTVVSLLEDALKC 704 (721)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (721)
.|.++...+ --...+..+++|++.
T Consensus 309 la~~~~~~g----~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 309 LGNAYTALG----NHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHT----CHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC----ChHHHHHHHHHHHHH
Confidence 888776654 234556666666653
No 79
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.83 E-value=5.7e-22 Score=183.46 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=93.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.| ...|.+++ ++++++|+.+++|+|||++. ++.++
T Consensus 26 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~-~~~~~~f~~~l~~iYtg~~~-~~~~~ 101 (125)
T 3ohu_A 26 QRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPE-EVTARGFGPLLQFAYTAKLL-LSREN 101 (125)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCT-TCCHHHHHHHHHHHTTSEEE-ECTTT
T ss_pred HHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCC-CCCHHHHHHHHHhHcCCceE-ECHHH
Confidence 4568889999999999999999999999999999999999977 67899984 49999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHH
Q 004984 255 LLEILIFANKFCCERLKDACDRKL 278 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L 278 (721)
+.+++.+|++|+++.|++.|++||
T Consensus 102 v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 102 IREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhC
Confidence 999999999999999999998764
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=9.3e-20 Score=214.17 Aligned_cols=183 Identities=11% Similarity=-0.033 Sum_probs=168.8
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 004984 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL--------GFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (721)
Q Consensus 473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL--------~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P 543 (721)
.++|+++.+++..| ...|++++|++.|++++ +.+|+ .+.+..+|.++..+|++++|+..|+++++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 67999999999888 88999999999999999 99996 78889999999999999999999999999999
Q ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 004984 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (721)
Q Consensus 544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA 623 (721)
++. .+...++.+.....++++| +..|+++|+++|+++.+|+++|.++.++|++++
T Consensus 465 ~~~------~a~~~lg~~~~~~g~~~~A------------------~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 465 WRW------RLVWYRAVAELLTGDYDSA------------------TKHFTEVLDTFPGELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp CCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-
T ss_pred chH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-
Confidence 983 4566666666667777777 889999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 624 l~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
+..|++|++++|+++++++++|.++..+|++++|++.|++|++++|++. |++++|.++..
T Consensus 520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999988 99999999844
No 81
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.82 E-value=4.6e-21 Score=176.11 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=89.8
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+..++.+|||+|+++|++|+|||.|||++|+||++||.++ +..|.++ ++++++|+.+++|+|||++. ++.++
T Consensus 21 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-i~~~~ 92 (119)
T 2q81_A 21 QRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLD--ISNAAGLGQVLEFMYTAKLS-LSPEN 92 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGG--GCCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHH
Confidence 3457889999999999999999999999999999999973 4578887 49999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHH
Q 004984 255 LLEILIFANKFCCERLKDACDRKLA 279 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~ 279 (721)
+.+++.+|++|+++.|++.|++||.
T Consensus 93 ~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 93 VDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999974
No 82
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.82 E-value=2.3e-21 Score=180.56 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=87.1
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+..++.+|||+|+|+|++|+|||.||+++|+||++||.++ ...+|+|++ ++++++|+.+++|+|||++. ++.++
T Consensus 27 l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~-~~~~~~f~~ll~~iYtg~~~-i~~~~ 100 (129)
T 3ga1_A 27 QRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPA-AVQPQSFQQILSFCYTGRLS-MNVGD 100 (129)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCT-TCCHHHHHHHHHHHHHSEEE-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECC-CCCHHHHHHHHHHHhCCccc-cCHHH
Confidence 3457889999999999999999999999999999999987 567899963 59999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHHhh
Q 004984 255 LLEILIFANKFCCERLKDACDRKLASL 281 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~~~ 281 (721)
+.+++.+|++|+++.|++.|++||.+.
T Consensus 101 ~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 101 QDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999764
No 83
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.82 E-value=6.7e-19 Score=187.74 Aligned_cols=201 Identities=12% Similarity=0.033 Sum_probs=173.5
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCC-HHHHHHHHHHH----Hhc---CCHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ--NVEAALAEINRILGFKLA-LECLELRFCFF----LAL---EDYQA 530 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg--~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~----~~l---gd~ee 530 (721)
.++|+..++++|++||++..+|++||.++..+| ++++|+..++++|.++|+ +..|+.|++++ ..+ +++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 379999999999999999999999999999999 999999999999999996 89999999988 777 89999
Q ss_pred HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH
Q 004984 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (721)
Q Consensus 531 Al~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~ 610 (721)
++..++++++++|++.. +.+.++-+......++ ..+++..++++|+.||+|-.+|++|
T Consensus 129 EL~~~~~~l~~~pkny~------aW~~R~~vl~~l~~~~----------------~~~EL~~~~~~i~~d~~N~sAW~~R 186 (306)
T 3dra_A 129 EFDILEAMLSSDPKNHH------VWSYRKWLVDTFDLHN----------------DAKELSFVDKVIDTDLKNNSAWSHR 186 (306)
T ss_dssp HHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCTT----------------CHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcccC----------------hHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999843 3333333333334443 0123889999999999999999999
Q ss_pred HHHHHHcCC------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH-HHHHHHHhcC---C-CHHHHHHHHH
Q 004984 611 SLLLLRLNC------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL-RKAEESIQMK---R-SFEAFFLKAY 679 (721)
Q Consensus 611 g~~L~~lg~------~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl-~~ye~Ai~i~---~-~~~a~~~~~~ 679 (721)
+.++..+|+ ++++++.+++++..+|+|..+++++|+++-..|+..+++ ..+++.+.++ | |..|...+|.
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 999999998 999999999999999999999999999999999977755 5777788876 4 4448888888
Q ss_pred Hhhc
Q 004984 680 ALAD 683 (721)
Q Consensus 680 ~~~~ 683 (721)
+++.
T Consensus 267 ~~~~ 270 (306)
T 3dra_A 267 IYTQ 270 (306)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8874
No 84
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=185.16 Aligned_cols=247 Identities=13% Similarity=0.005 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------c--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC-----
Q 004984 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--------G--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSV----- 445 (721)
Q Consensus 381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--------~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~----- 445 (721)
....+++.+|.++...|++++|+..|++|+++ . ...++..+|.++...|++++|+..+.++++..
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34677889999999999999999999999985 2 24467889999999999999999999999873
Q ss_pred ---CCcHHHHHHHhh----cCChhHHHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 004984 446 ---TPLGWMYQERSL----YCEGDKRWEDLDKATALD--------PTLSYPYMYRASSLMTKQNVEAALAEINRILGF-- 508 (721)
Q Consensus 446 ---~~~~~ay~~rg~----~~~~~eAl~d~~kAieLd--------P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-- 508 (721)
|..+.++...|. .++.++|+..|++++++. |....+|.++|.++..+|++++|+..|++++++
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 556677777764 356699999999999984 778899999999999999999999999999998
Q ss_pred ------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 004984 509 ------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (721)
Q Consensus 509 ------~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (721)
+|. ...+..+|.++..+|++++|+..|++++++.|+..... . .. .....+..
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~--~~------~~~~~~~~----------- 243 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS--V--DD------ENKPIWMH----------- 243 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----------------CCHHHH-----------
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--C--Cc------chHHHHHH-----------
Confidence 554 55677889999999999999999999999866531000 0 00 00000000
Q ss_pred ccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (721)
Q Consensus 582 ~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y 661 (721)
...+...+......+.+.+|+..++++....|..+.++.++|.++..+|++++|+..|
T Consensus 244 ----------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 244 ----------------------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp ----------------------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----------------------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1112223333444566666777777777777777777777777777777777777777
Q ss_pred HHHHhcCCC
Q 004984 662 EESIQMKRS 670 (721)
Q Consensus 662 e~Ai~i~~~ 670 (721)
++|+++.|.
T Consensus 302 ~~al~l~~~ 310 (311)
T 3nf1_A 302 EAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhc
Confidence 777777664
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=3.3e-18 Score=183.19 Aligned_cols=289 Identities=14% Similarity=0.089 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch-------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC--------
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------- 447 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-------- 447 (721)
......+|.++...|++++|+..+++|++..+. .++..+|.++..+|++++|...+.++++..+.
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 455678899999999999999999999987321 15677899999999999999999999987543
Q ss_pred -----cHHHHHHHhhcCChhHHHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---
Q 004984 448 -----LGWMYQERSLYCEGDKRWEDLDKATALD--------PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--- 511 (721)
Q Consensus 448 -----~~~ay~~rg~~~~~~eAl~d~~kAieLd--------P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~--- 511 (721)
.|.++..+ |+.++|+..|++++++. |....++.++|.++..+|++++|+..+++++++.|.
T Consensus 94 ~~~~~la~~~~~~---G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 94 WSLIQQSEILFAQ---GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 23334444 45599999999999986 455678999999999999999999999999998774
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccc
Q 004984 512 ---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 587 (721)
Q Consensus 512 ---~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~ 587 (721)
...+.+++.++...|++++|+..+++++++.+.... .............+.....++++|
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A---------------- 234 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA---------------- 234 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH----------------
Confidence 234667889999999999999999999998544211 000010111111122233444444
Q ss_pred chHHHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHH
Q 004984 588 GSLSVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEG 657 (721)
Q Consensus 588 ~al~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~Ly~~G~~deA 657 (721)
...++++++..|... ..+.++|.++..+|++++|+..++++++..+.. .+++..+|.++..+|++++|
T Consensus 235 --~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 235 --ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp --HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred --HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 667777777777642 256789999999999999999999999987653 36889999999999999999
Q ss_pred HHHHHHHHhcCCCHH--HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 004984 658 LRKAEESIQMKRSFE--AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (721)
Q Consensus 658 l~~ye~Ai~i~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (721)
...+++|+.+.+... -+|+ |. ...+..+|+..++-
T Consensus 313 ~~~l~~al~~~~~~g~~~~~~------~~------g~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 313 QRVLLDALKLANRTGFISHFV------IE------GEAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH------TT------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccHHHHHH------Hc------cHHHHHHHHHHHhC
Confidence 999999999866433 2222 11 14566777666544
No 86
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.81 E-value=1.6e-18 Score=193.76 Aligned_cols=159 Identities=14% Similarity=0.047 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhccch---HHHHHHHHHHHhccchhhHhhHHHHHHHhC-----CHHHHHHHHHHHHhcCCC-----cHH
Q 004984 384 LAFHQLGCVRLLRKEY---DEAEHLFEAAVNAGHIYSIAGLARLGYIKG-----HKLWAYEKLNSVISSVTP-----LGW 450 (721)
Q Consensus 384 la~~~lG~~~~~~g~y---~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G-----~~~~A~~~~~~aI~~~~~-----~~~ 450 (721)
.+++++|.++...|++ ++|+.+|++|++. +..+++.+|.+++..| ++++|+.+|.++++..+. +|.
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~ 114 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAM 114 (452)
T ss_dssp TGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3455666666666665 6666666666665 5556666666555544 556666666666664432 233
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH----HHHHHhcCCCHHHHHHHHHHHHhcC
Q 004984 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE----INRILGFKLALECLELRFCFFLALE 526 (721)
Q Consensus 451 ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~----~~kAL~l~P~~~~~~~R~~~~~~lg 526 (721)
+|...+......+++..+.++.+ +.++.+++++|.+|...+.+++++.. ++++..-+ +.+++++|.+|...|
T Consensus 115 ~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~--~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 115 LYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT--DICYVELATVYQKKQ 190 (452)
T ss_dssp HHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC--TTHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcC
Confidence 33333322222344444444443 23355666666666666644444443 44444333 346677888888888
Q ss_pred ---CHHHHHHHHHHHHhhCCCchh
Q 004984 527 ---DYQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 527 ---d~eeAl~d~~kal~L~P~~~~ 547 (721)
++++|+..|+++.+.+|....
T Consensus 191 ~~~~~~~A~~~~~~aa~~g~~~a~ 214 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRGTVTAQ 214 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888887743
No 87
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.80 E-value=3.3e-17 Score=167.96 Aligned_cols=208 Identities=11% Similarity=0.025 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALC 533 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~eeAl~ 533 (721)
++|+..|++|++ |+++.++.++|.++.. .+++++|+..|++|++++ ++..++++|.++.. .|++++|+.
T Consensus 23 ~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~ 99 (273)
T 1ouv_A 23 TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQ 99 (273)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHH
Confidence 455555666776 7788999999999999 999999999999999886 68888999999999 999999999
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 004984 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (721)
Q Consensus 534 d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~ 609 (721)
.|+++++++ + ..+...++.+... ..++++| +..++++++.+ ++.++++
T Consensus 100 ~~~~a~~~~--~------~~a~~~lg~~~~~~~~~~~~~~~A------------------~~~~~~a~~~~--~~~a~~~ 151 (273)
T 1ouv_A 100 YYSKACDLK--Y------AEGCASLGGIYHDGKVVTRDFKKA------------------VEYFTKACDLN--DGDGCTI 151 (273)
T ss_dssp HHHHHHHTT--C------HHHHHHHHHHHHHCSSSCCCHHHH------------------HHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHcC--C------ccHHHHHHHHHHcCCCcccCHHHH------------------HHHHHHHHhcC--cHHHHHH
Confidence 999999985 3 2234444433333 4444444 88999999986 7889999
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 004984 610 QSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (721)
Q Consensus 610 ~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~----~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~ 681 (721)
+|.++.. .+++++|+..|++|++. +++++++++|+++.. .|++++|+..|++|+++.| ..++++.|.++
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~ 228 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 9999999 99999999999999988 468999999999999 9999999999999999988 67999999999
Q ss_pred hccCCCCCchhhHHHHHHHhhc
Q 004984 682 ADSSQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~ 703 (721)
....-....-..-+..++.|+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHH
Confidence 8732222223344566666654
No 88
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=1.1e-18 Score=188.48 Aligned_cols=190 Identities=9% Similarity=-0.079 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCC
Q 004984 462 DKRWEDLDKATALDPTL-------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALED 527 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~-------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd 527 (721)
++|+..|++|+++.|+. +.++.++|.++..+|++++|+..|++|+++.|. ...+.++|.++..+|+
T Consensus 160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 44444444444442222 335566666666666666666666666655331 1234455666666666
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh-----CCC
Q 004984 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES-----DAP 602 (721)
Q Consensus 528 ~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l-----~P~ 602 (721)
+++|+..|++++++.+......+...+...++.+.....++++| +..+++++++ +|.
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA------------------HEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHHHHcCCHH
Confidence 66666666666663211100000122333333333333444444 4455555555 333
Q ss_pred ChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 603 KGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 603 ~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
....+..+|.++...|+ .++|+..++++ ...|...+++.++|.++..+|++++|+..|++|+++..+
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33345678888999998 88899998887 667777889999999999999999999999999988654
No 89
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.80 E-value=1.4e-17 Score=179.10 Aligned_cols=191 Identities=11% Similarity=0.034 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN--VEAALAEINRILGFKL-ALECLELRFCFFLALED-YQAALCDVQA 537 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~--~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd-~eeAl~d~~k 537 (721)
++++..+++++..+|++..+|++|+.++..+|+ ++++++.++++|+++| ++.+|..|+++...+|+ +++++..+++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 788999999999999999999999999999995 8999999999999999 48899999999999999 6999999999
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhh--------------hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC
Q 004984 538 ILTLSPDYRMFEGRVAASQLHMLVREHI--------------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (721)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~--------------~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~ 603 (721)
+++.+|.|.- +.+.++.+.... ..+++ ++..++++|..+|++
T Consensus 171 ~I~~~p~N~S------AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~e------------------Ele~~~~ai~~~P~d 226 (331)
T 3dss_A 171 LITRNFSNYS------SWHYRSCLLPQLHPQPDSGPQGRLPENVLLK------------------ELELVQNAFFTDPND 226 (331)
T ss_dssp HHHHCSCCHH------HHHHHHHHHHHHSCCC------CCCHHHHHH------------------HHHHHHHHHHHSTTC
T ss_pred HHHHCCCCHH------HHHHHHHHHHHhhhccccccccccchHHHHH------------------HHHHHHHHHHhCCCC
Confidence 9999999832 333333222222 11222 488999999999999
Q ss_pred hhHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCC
Q 004984 604 GVLYFRQSLLLLRL-----------NCPEAAMRSLQLARQHAASDHERLVYEGWILY---DTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 604 ~~~~~~~g~~L~~l-----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly---~~G~~deAl~~ye~Ai~i~~ 669 (721)
..+|+.+.-++.+. +..++++..++++++++|++...+.....+.- ..|..++....+.+.++++|
T Consensus 227 ~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 227 QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 99997555555544 45789999999999999999655444433322 36899999999999999999
Q ss_pred CHHHHHH
Q 004984 670 SFEAFFL 676 (721)
Q Consensus 670 ~~~a~~~ 676 (721)
-=.-|+.
T Consensus 307 ~r~~~y~ 313 (331)
T 3dss_A 307 MRAAYLD 313 (331)
T ss_dssp GGHHHHH
T ss_pred chhhHHH
Confidence 7765543
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.80 E-value=1.6e-18 Score=172.54 Aligned_cols=171 Identities=11% Similarity=-0.001 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL----------------RFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~----------------R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
+..+..+|..++..|++++|+..|+++++++|+ +..++. +|.++..+|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666664 455555 666666666666666666666666
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC--
Q 004984 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC-- 619 (721)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~-- 619 (721)
+|++. .+...++.+.....++++| +..|+++|+++|.++.+|+++|.++..+|.
T Consensus 84 ~p~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 84 APNNV------DCLEACAEMQVCRGQEKDA------------------LRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp CTTCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence 66662 2333344444444444444 566666777777777888888888877664
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (721)
Q Consensus 620 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~ 674 (721)
.++|...+++++...|. ..+++++|.+++.+|++++|+..|++|++++|+.++.
T Consensus 140 ~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 193 (208)
T 3urz_A 140 KKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ 193 (208)
T ss_dssp HHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHH
T ss_pred HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHH
Confidence 45677788887754443 4588999999999999999999999999999998743
No 91
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.80 E-value=4.1e-20 Score=170.17 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=85.6
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
...++.+|||+|+|+|++|+|||.|||++|+||++ ....|+|+ ++++++|+.+|+|+|||++. ++.++
T Consensus 24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~--~v~~~~f~~ll~fiYtg~~~-i~~~~ 91 (119)
T 3m5b_A 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGE--GISPSTFAQLLNFVYGESVE-LQPGE 91 (119)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCS--SCCHHHHHHHHHHHTTCCEE-ECGGG
T ss_pred HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeC--CCCHHHHHHHHHHHcCCCcC-cCHHH
Confidence 34578899999999999999999999999999985 34678888 59999999999999999999 99999
Q ss_pred HHHHHHHhhhcChhhHHHHHHHHHHh
Q 004984 255 LLEILIFANKFCCERLKDACDRKLAS 280 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~~C~~~L~~ 280 (721)
+++++.+|++|+++.|++.|++++..
T Consensus 92 v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 92 LRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999999999998764
No 92
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=185.32 Aligned_cols=233 Identities=11% Similarity=-0.003 Sum_probs=165.5
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHhh----cCChhHHHHHHHHHHhc--------
Q 004984 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISS--------VTPLGWMYQERSL----YCEGDKRWEDLDKATAL-------- 474 (721)
Q Consensus 415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--------~~~~~~ay~~rg~----~~~~~eAl~d~~kAieL-------- 474 (721)
..++..+|.++...|++++|+..+.+++++ .|..+.++..+|. .++.++|+..|++|+++
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788999999999999999999999995 5556677776664 36669999999999998
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 004984 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--------LA-LECLELRFCFFLALEDYQAALCDVQAILTL---- 541 (721)
Q Consensus 475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~--------P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L---- 541 (721)
+|..+.+|.++|.++..+|++++|+..|++++++. |. ...+..+|.++..+|++++|+..|++++++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999984 32 455677899999999999999999999998
Q ss_pred ----CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC---------ChhHHH
Q 004984 542 ----SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---------KGVLYF 608 (721)
Q Consensus 542 ----~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~---------~~~~~~ 608 (721)
+|.. ..+...++.+.....++++| +..+++++++.|. ....+.
T Consensus 187 ~~~~~~~~------~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 187 LGPDDPNV------AKTKNNLASCYLKQGKFKQA------------------ETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp SCTTCHHH------HHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHHHHHHHC------CCHHH
T ss_pred hCCCCHHH------HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 4443 33455555555556666666 7788888876443 222222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCC
Q 004984 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQD 687 (721)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~ 687 (721)
.. ..+...+..+...+.+++|+..+++++...|... +++..|.++...+-
T Consensus 243 ~~----------------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 293 (311)
T 3nf1_A 243 HA----------------------------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK- 293 (311)
T ss_dssp HH----------------------------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC-
T ss_pred HH----------------------------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC-
Confidence 22 2334444455567888888889999998888877 88888988876542
Q ss_pred CCchhhHHHHHHHhhc
Q 004984 688 SSCSSTVVSLLEDALK 703 (721)
Q Consensus 688 ~~~~~~~~~~~~~~~~ 703 (721)
-..-+..+++|++
T Consensus 294 ---~~~A~~~~~~al~ 306 (311)
T 3nf1_A 294 ---FEAAETLEEAAMR 306 (311)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 3445666666664
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=5.4e-18 Score=173.13 Aligned_cols=182 Identities=9% Similarity=0.033 Sum_probs=156.2
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 470 kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
...+++|+.+..++.+|..++..|++++|+..|+++++.+|+ +..++.+|.++..+|++++|+..|++++++.|++
T Consensus 6 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 6 GSGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 346789999999999999999999999999999999999995 5678889999999999999999999999999976
Q ss_pred hhhhhhHHHHHHHHHHHHh--------hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH----------
Q 004984 546 RMFEGRVAASQLHMLVREH--------IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY---------- 607 (721)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~--------~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~---------- 607 (721)
... ..+...++.+... ..++++| +..++++++.+|+++.++
T Consensus 86 ~~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 86 PRV---PQAEYERAMCYYKLSPPYELDQTDTRKA------------------IEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp TTH---HHHHHHHHHHHHHHCCCTTSCCHHHHHH------------------HHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred chh---HHHHHHHHHHHHHhcccccccchhHHHH------------------HHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 321 2344444444444 4555555 889999999999998888
Q ss_pred -------HHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 004984 608 -------FRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDT----------SHCEEGLRKAEESIQM 667 (721)
Q Consensus 608 -------~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~Ly~~----------G~~deAl~~ye~Ai~i 667 (721)
+++|.++..+|++++|+..|+++++..|+ .+++++++|.+++.+ |++++|+..|++++++
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999 567999999999987 9999999999999999
Q ss_pred CCCHH
Q 004984 668 KRSFE 672 (721)
Q Consensus 668 ~~~~~ 672 (721)
.|+..
T Consensus 225 ~p~~~ 229 (261)
T 3qky_A 225 FPDSP 229 (261)
T ss_dssp CTTCT
T ss_pred CCCCh
Confidence 99874
No 94
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=1.7e-19 Score=207.79 Aligned_cols=186 Identities=13% Similarity=0.106 Sum_probs=163.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC--CH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALE--DY 528 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg--d~ 528 (721)
++|++.+++||+++|++..+|++||.++..+|+ +++|++.++++|+.+|+ +.+|+.|++++..+| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 889999999999999999999999999999999 99999999999999996 899999999999999 77
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh-hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 004984 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (721)
Q Consensus 529 eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~ 607 (721)
++|+..+++++++||++.. +...++-+..... .+++ ++..++++|+.+|.+..+|
T Consensus 126 ~~el~~~~k~l~~d~~N~~------aW~~R~~~l~~l~~~~~~------------------el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 126 ARELELCARFLEADERNFH------CWDYRRFVAAQAAVAPAE------------------ELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTCCCHHH------------------HHHHHHTTTTTTCCCHHHH
T ss_pred HHHHHHHHHHHhhcccccc------HHHHHHHHHHHcCCChHH------------------HHHHHHHHHHHCCCCccHH
Confidence 9999999999999999843 2222222222222 3333 3889999999999999999
Q ss_pred HHHHHHHHHc--------------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHH------------HHHHH
Q 004984 608 FRQSLLLLRL--------------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE------------GLRKA 661 (721)
Q Consensus 608 ~~~g~~L~~l--------------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~de------------Al~~y 661 (721)
+++|.++.++ +++++|++.+++|+.++|++..+++|+||++...|++++ |+..|
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f 261 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCF 261 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEe
Confidence 9999999996 567999999999999999999999999999999999888 77778
Q ss_pred HHHHhcCCCH
Q 004984 662 EESIQMKRSF 671 (721)
Q Consensus 662 e~Ai~i~~~~ 671 (721)
.+|+.++|+.
T Consensus 262 ~~~i~~~~~~ 271 (567)
T 1dce_A 262 SRPLTVGSRM 271 (567)
T ss_dssp EEEECTTBTT
T ss_pred ccceeccccc
Confidence 9999999874
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.79 E-value=2.4e-19 Score=169.81 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=93.7
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (721)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (721)
+|.++..+|++ ++|++.|.+|+..+|+++.+++++|.+|.++|++++|+..|+++|+++|+ +..++++|.++..+|
T Consensus 3 LG~~~~~~~~~---e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADV---ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHH---HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChH---HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45555566655 77777777777777777777777777777777777777777777777774 666666777777777
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 004984 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (721)
Q Consensus 527 d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~ 606 (721)
++++|+..|+++++++|++ +++
T Consensus 80 ~~~~A~~~~~~al~~~p~~----------------------------------------------------------~~~ 101 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQ----------------------------------------------------------KDL 101 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTC----------------------------------------------------------HHH
T ss_pred chHHHHHHHHHHHHhCCCC----------------------------------------------------------HHH
Confidence 7777766666666666554 234
Q ss_pred HHHHHHHHHHcCChHHHHHH-HHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984 607 YFRQSLLLLRLNCPEAAMRS-LQLARQHAASDHERLVYEGWILYDTSH 653 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~-~~~Al~l~P~~~ea~~~~G~~Ly~~G~ 653 (721)
|+++|.++.++|++++|... +++|++++|++++++..++.++..+|+
T Consensus 102 ~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 102 VLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 55666666666666555444 366666666666666666666666654
No 96
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=6.2e-17 Score=183.08 Aligned_cols=315 Identities=12% Similarity=0.023 Sum_probs=209.3
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc-hhhHhhHHH-HHHHhCCHHHHHH--
Q 004984 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-IYSIAGLAR-LGYIKGHKLWAYE-- 436 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-~~A~~~lg~-~~~~~G~~~~A~~-- 436 (721)
+.+.+..++++++...|.. ...+..+|......|++++|+..|++||+..| ...|..++. +....|+..+|.+
T Consensus 27 ~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~ 103 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSS---GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM 103 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHH
Confidence 4556667778877644322 45566777777788888888888888888743 344555553 4445677766654
Q ss_pred --HHHHHHhc---CCCcHHHHHHHhh-------------cCChhHHHHHHHHHHhcCCCCh--HHHHHHHH---------
Q 004984 437 --KLNSVISS---VTPLGWMYQERSL-------------YCEGDKRWEDLDKATALDPTLS--YPYMYRAS--------- 487 (721)
Q Consensus 437 --~~~~aI~~---~~~~~~ay~~rg~-------------~~~~~eAl~d~~kAieLdP~~~--~ay~~rg~--------- 487 (721)
.|++++.. +|+.+.+|...+. .++.++|...|++|++ .|... ..|...+.
T Consensus 104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~ 182 (530)
T 2ooe_A 104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHL 182 (530)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhH
Confidence 67777653 4555555543221 1233788888888888 57653 12211000
Q ss_pred ------------------------------------------------------HHHhc------CC----HHHHHHHHH
Q 004984 488 ------------------------------------------------------SLMTK------QN----VEAALAEIN 503 (721)
Q Consensus 488 ------------------------------------------------------~l~~l------g~----~~eAl~~~~ 503 (721)
+..+. ++ .+.|+..|+
T Consensus 183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 00000 11 125666777
Q ss_pred HHHhcCCC-HHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHHHHhhhh
Q 004984 504 RILGFKLA-LECLELRFCFFLA-------LEDYQ-------AALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDN 567 (721)
Q Consensus 504 kAL~l~P~-~~~~~~R~~~~~~-------lgd~e-------eAl~d~~kal~-L~P~~~~~~~~~~a~~~~~~l~~~~~~ 567 (721)
+||..+|+ ++.|...+.++.. +|+++ +|+..|++|++ ++|++.. +....+.+.....+
T Consensus 263 ~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~------l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 263 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------LYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH------HHHHHHHHHHHTTC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH------HHHHHHHHHHhcCC
Confidence 77777774 6667777766654 67766 77777777776 6777632 33333333333334
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004984 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (721)
Q Consensus 568 ~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~-~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 646 (721)
+++| ..+|+++|+++|.++ .+|.+.|.++.++|+.++|...|++|++..|.+...+...|+
T Consensus 337 ~~~A------------------~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 337 YEKV------------------HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp HHHH------------------HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred HHHH------------------HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 4444 788999999999985 689999999999999999999999999999988888887777
Q ss_pred HHH-hcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc-CCCC
Q 004984 647 ILY-DTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK-CPSD 707 (721)
Q Consensus 647 ~Ly-~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 707 (721)
+.+ .+|++++|...|++|+++.|+.. +|...|..+... ..-..+..++|.|+. ||.+
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~----g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL----NEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----TCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC----CCHhhHHHHHHHHHhccCCC
Confidence 744 58999999999999999999766 666666555432 234567888888886 4543
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=1.7e-18 Score=172.42 Aligned_cols=163 Identities=9% Similarity=-0.071 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhh----------------HHHHHHHhCCHHHHHHHHHHHHhc
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAG----------------LARLGYIKGHKLWAYEKLNSVISS 444 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~----------------lg~~~~~~G~~~~A~~~~~~aI~~ 444 (721)
...+...|..+...|++++|+..|++|++++| ..+++. +|.++..+|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999965 456778 999999999999999999999999
Q ss_pred CCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCHHHHHHH
Q 004984 445 VTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN--VEAALAEINRILGFKLALECLELR 518 (721)
Q Consensus 445 ~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~--~~eAl~~~~kAL~l~P~~~~~~~R 518 (721)
+|+++.++.++|.. ++.++|+..|++|++++|+++.+|+++|.+|...|+ ..+|+..|++++..+|....++.+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 163 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 99999999988763 777999999999999999999999999999987764 567788999988544434456788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 519 FCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 519 ~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
|.++..+|++++|+.+|++|++++|+.
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999986
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=2.6e-18 Score=180.04 Aligned_cols=207 Identities=10% Similarity=-0.006 Sum_probs=157.2
Q ss_pred HHHHHHHHHhcCCCc-HH-HHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 004984 434 AYEKLNSVISSVTPL-GW-MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL- 510 (721)
Q Consensus 434 A~~~~~~aI~~~~~~-~~-ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P- 510 (721)
|.+.+.+|-+.-+.. |+ .|+..+.-.+.++|+..|++| |.++..+|++++|+..|++|+++.+
T Consensus 4 a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~ 69 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKK 69 (292)
T ss_dssp HHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445555566655542 22 233210001238888888888 6789999999999999999999853
Q ss_pred --C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh-hhhhHHHHHHhhhhcccc
Q 004984 511 --A----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-DNWTIADCWLQLYDRWSS 583 (721)
Q Consensus 511 --~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~ 583 (721)
+ ...+.++|.+|..+|++++|+..|++|+++.|+.....+...+...++.+.... .++++|
T Consensus 70 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A------------ 137 (292)
T 1qqe_A 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA------------ 137 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH------------
T ss_pred hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHH------------
Confidence 1 346778999999999999999999999999887532222233444444444442 555555
Q ss_pred ccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHh
Q 004984 584 VDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-------RLVYEGWILYD 650 (721)
Q Consensus 584 ~dd~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-------a~~~~G~~Ly~ 650 (721)
+..|++||++.|.. +.++.++|.++..+|++++|+..|++|+++.|++.. ++.++|.++..
T Consensus 138 ------~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 211 (292)
T 1qqe_A 138 ------IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211 (292)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 88999999999876 578999999999999999999999999999999875 57899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCHH
Q 004984 651 TSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 651 ~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+|++++|+..|+++++++|+|.
T Consensus 212 ~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 212 ATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp TTCHHHHHHHHHGGGCC-----
T ss_pred cCCHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999986
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=3.3e-19 Score=168.78 Aligned_cols=144 Identities=10% Similarity=-0.020 Sum_probs=126.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHH
Q 004984 484 YRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVR 562 (721)
Q Consensus 484 ~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~ 562 (721)
++|.++...|++++|++.+.+++..+|+ +..++.+|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~----------------- 64 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD----------------- 64 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------
Confidence 5789999999999999999999999886 6667889999999999999999888888887776
Q ss_pred HhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 004984 563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (721)
Q Consensus 563 ~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~ 642 (721)
+.+|+++|.++..+|++++|+..|++|++++|+++++++
T Consensus 65 -----------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 65 -----------------------------------------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 457889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHH-HHHHhcCCCHH-HHHHHHHHhhccC
Q 004984 643 YEGWILYDTSHCEEGLRKA-EESIQMKRSFE-AFFLKAYALADSS 685 (721)
Q Consensus 643 ~~G~~Ly~~G~~deAl~~y-e~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (721)
++|.+++.+|++++|...| ++|++++|+.. +|.+|+..+.-.+
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 9999999999999988875 99999999988 9999998876544
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=1.1e-18 Score=160.74 Aligned_cols=122 Identities=18% Similarity=0.151 Sum_probs=109.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 469 ~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~ 547 (721)
.++..+||+.+.+|.++|.+++..|++++|+..|++||+++|+ +..+.++|.++..+|++++|+.+|+++++++|++
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 80 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-- 80 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--
Confidence 3567799999999999999999999999999999999999996 8888999999999999999999988888888776
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 004984 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (721)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~ 627 (721)
+.+|+++|.++..+|++++|+..|
T Consensus 81 --------------------------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 81 --------------------------------------------------------IKGYIRKAACLVAMREWSKAQRAY 104 (126)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------------------------------hHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356888999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHH
Q 004984 628 QLARQHAASDHERLVYEGWIL 648 (721)
Q Consensus 628 ~~Al~l~P~~~ea~~~~G~~L 648 (721)
++|++++|++.+++.++|.+|
T Consensus 105 ~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 105 EDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999998774
No 101
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=7.1e-16 Score=174.40 Aligned_cols=252 Identities=8% Similarity=-0.042 Sum_probs=189.4
Q ss_pred ccchHHHHHHHHHHHhccch---hhHhhHHHH-------------HHHhCCHHHHHHHHHH------HHhc-----CCCc
Q 004984 396 RKEYDEAEHLFEAAVNAGHI---YSIAGLARL-------------GYIKGHKLWAYEKLNS------VISS-----VTPL 448 (721)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~~~---~A~~~lg~~-------------~~~~G~~~~A~~~~~~------aI~~-----~~~~ 448 (721)
.|++++|...|++||+.... ..+...+.. ....|++..|...+.. +++. .|..
T Consensus 143 ~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 143 NQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 78999999999999986221 112111111 1124566667655544 3332 2221
Q ss_pred -------HHHHHHH-----hh---cCCh----hHHHHHHHHHHhcCCCChHHHHHHHHHHHh-------cCCHH------
Q 004984 449 -------GWMYQER-----SL---YCEG----DKRWEDLDKATALDPTLSYPYMYRASSLMT-------KQNVE------ 496 (721)
Q Consensus 449 -------~~ay~~r-----g~---~~~~----~eAl~d~~kAieLdP~~~~ay~~rg~~l~~-------lg~~~------ 496 (721)
..+|... +. .++. ++++..|++|+..+|+++.+|+++|..+.. +|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 1233322 21 1111 377889999999999999999999999986 79987
Q ss_pred -HHHHHHHHHHh-cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 004984 497 -AALAEINRILG-FKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (721)
Q Consensus 497 -eAl~~~~kAL~-l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~ 573 (721)
+|+..|++|++ ++|+ ...|...+.++...|++++|...|+++++++|++.. .+....+.+....+++++|
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~~~~~~~~A-- 375 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-----LVYIQYMKFARRAEGIKSG-- 375 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH-----HHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch-----HHHHHHHHHHHHhcCHHHH--
Confidence 99999999997 8996 788888999999999999999999999999998731 1233333333334445555
Q ss_pred HHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL-LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (721)
Q Consensus 574 ~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~-L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G 652 (721)
...|++|++..|.....+...+.+ +..+|++++|...|++|++..|++++++.+.|..+..+|
T Consensus 376 ----------------~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 376 ----------------RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp ----------------HHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred ----------------HHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 778999999999988888777665 346999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 004984 653 HCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 653 ~~deAl~~ye~Ai~i~~~ 670 (721)
++++|...|++|+...|.
T Consensus 440 ~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp CHHHHHHHHHHHHHSCCS
T ss_pred CHhhHHHHHHHHHhccCC
Confidence 999999999999998653
No 102
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=1.6e-17 Score=185.51 Aligned_cols=278 Identities=15% Similarity=0.046 Sum_probs=196.3
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHH---HHH
Q 004984 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRK-----EYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKL---WAY 435 (721)
Q Consensus 364 ~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g-----~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~---~A~ 435 (721)
....+++++... ...+++++|.++...+ ++++|+.+|++|++.++..+++.+|.+|...++.. .++
T Consensus 56 ~A~~~~~~A~~~------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~ 129 (452)
T 3e4b_A 56 QAEATYRAAADT------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQ 129 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHH
T ss_pred HHHHHHHHHHhC------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 444555554422 4567899999766665 89999999999999999999999999999877644 456
Q ss_pred HHHHHHHhcCC-----CcHHHHHHHhhcC-ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 004984 436 EKLNSVISSVT-----PLGWMYQERSLYC-EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRIL 506 (721)
Q Consensus 436 ~~~~~aI~~~~-----~~~~ay~~rg~~~-~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg---~~~eAl~~~~kAL 506 (721)
.++.++.+... .+|..|...+.+. ..+++...+.+|...+|+ +++++|.+|...| ++++|+..|++++
T Consensus 130 ~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa 206 (452)
T 3e4b_A 130 QQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV 206 (452)
T ss_dssp HHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 66666665433 2455555554331 114455567777777776 9999999999999 9999999999999
Q ss_pred hcCCC-HHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH-H--HhhhhhhHHHHHHhhh
Q 004984 507 GFKLA-LECLELRFCFFLAL----EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV-R--EHIDNWTIADCWLQLY 578 (721)
Q Consensus 507 ~l~P~-~~~~~~R~~~~~~l----gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l-~--~~~~~~~~A~~~~~l~ 578 (721)
+..|. ...+++.|.+|... +|+++|+..|+++. |++.. +...++.+ . ....++++
T Consensus 207 ~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~------a~~~Lg~~~~~~~~~~d~~~-------- 269 (452)
T 3e4b_A 207 SRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA------SWVSLAQLLYDFPELGDVEQ-------- 269 (452)
T ss_dssp HTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH------HHHHHHHHHHHSGGGCCHHH--------
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH------HHHHHHHHHHhCCCCCCHHH--------
Confidence 99885 66667888888666 79999999999998 77743 33333322 1 11233333
Q ss_pred hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh---
Q 004984 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN-----CPEAAMRSLQLARQHAASDHERLVYEGWILYD--- 650 (721)
Q Consensus 579 ~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg-----~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~--- 650 (721)
|+..|+++++ ++++.+++++|.++. .| ++++|+..|++|. |.++++++++|.++..
T Consensus 270 ----------A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 270 ----------MMKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYL 333 (452)
T ss_dssp ----------HHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTT
T ss_pred ----------HHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCC
Confidence 4778888875 458888899998887 55 8888999999888 8888999999977766
Q ss_pred -cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcc
Q 004984 651 -TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 684 (721)
Q Consensus 651 -~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~ 684 (721)
..++++|+..|++|.+.. +..|.++.|+.+...
T Consensus 334 ~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAARNG-QNSADFAIAQLFSQG 367 (452)
T ss_dssp SSCCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHHHHhhC-hHHHHHHHHHHHHhC
Confidence 338899999999888753 334777778777653
No 103
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.78 E-value=3.3e-18 Score=174.70 Aligned_cols=69 Identities=4% Similarity=-0.154 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCC---ChhHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCC
Q 004984 590 LSVIYQMLESDAP---KGVLYFRQSLLLLRL----------NCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSH 653 (721)
Q Consensus 590 l~~~~qaL~l~P~---~~~~~~~~g~~L~~l----------g~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~Ly~~G~ 653 (721)
+..++++++..|. .+.+++++|.++..+ |++++|+..|+++++..|+++ ++...++.++..+|+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 345778888888877 999999999999999999995 556666777766666
Q ss_pred HHHHH
Q 004984 654 CEEGL 658 (721)
Q Consensus 654 ~deAl 658 (721)
++++.
T Consensus 248 ~~~~~ 252 (261)
T 3qky_A 248 LEGDA 252 (261)
T ss_dssp HHTCT
T ss_pred hhhhh
Confidence 65543
No 104
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=1e-17 Score=158.11 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~ 557 (721)
+..|..+|.++...|++++|+..|+++++.+|+ +..+..+|.++...|++++|+..++++++++|++.. +...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK------VATV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHH
Confidence 455666777777777777777777777777664 555666677777777777777777777777776632 2333
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (721)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (721)
.+.+.....++++| +..+++++..+|.++.+++.+|.++..+|++++|+..++++++..|++
T Consensus 82 ~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 82 LGLTYVQVQKYDLA------------------VPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCHHHH------------------HHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 33333334444444 566777777777778889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+.++.++|.+++.+|++++|+..+++++++.|++.
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 99999999999999999999999999999988764
No 105
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.77 E-value=9.8e-18 Score=180.93 Aligned_cols=236 Identities=9% Similarity=-0.072 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc----c----chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-------
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA----G----HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------- 447 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~----~----~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~------- 447 (721)
...++.+|..+...|++++|+..|++|+++ + ...++..+|.++..+|+++.|+..+.+|+++.+.
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 345577999999999999999999999986 1 3457889999999999999999999999998443
Q ss_pred cHHHHHHHhh----cCChhHHHHHHHHHHhcCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CC
Q 004984 448 LGWMYQERSL----YCEGDKRWEDLDKATALDPTLS------YPYMYRASSLMTKQNVEAALAEINRILGF-----K-LA 511 (721)
Q Consensus 448 ~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~------~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-----~-P~ 511 (721)
.+.++.+.|. .++.++|+..|++|+++.|+.. .+|.++|.++..+|++++|+..|++|+++ + |.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 2345555553 2566999999999999977664 59999999999999999999999999994 5 65
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-h
Q 004984 512 -LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-S 589 (721)
Q Consensus 512 -~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-a 589 (721)
+..+.++|.++..+|++++|+..|++++++.+......... ....++.+.....+. +.+. |
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~~~~~~~~~----------------~~~~~a 325 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS-EFEFLKSLYLSGPDE----------------EAIQGF 325 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHTSSCCH----------------HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcH----------------HHHHHH
Confidence 56778899999999999999999999999965421100001 122233222222221 0011 3
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (721)
+..++++ ...|....++.++|.++..+|++++|+..+++|+++...
T Consensus 326 l~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 326 FDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4455554 455666778999999999999999999999999998765
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.77 E-value=2.7e-18 Score=165.77 Aligned_cols=168 Identities=13% Similarity=0.008 Sum_probs=140.7
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 004984 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (721)
Q Consensus 475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~ 553 (721)
||.....+..+|.++...|++++|+..|+++++++|+ +..++.+|.++..+|++++|+..|+++++++| +..+.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~---- 76 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK---- 76 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH----
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH----
Confidence 5667788999999999999999999999999999996 78889999999999999999999999999999 64321
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004984 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (721)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (721)
...+.+... ++ . +..+++..++++++++|+++.+++++|.++..+|++++|+..|++++++
T Consensus 77 --~~~~~~~~~-~~---~-------------~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 77 --SLIAKLELH-QQ---A-------------AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp --HHHHHHHHH-HH---H-------------TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHH-hh---c-------------ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 111111000 00 0 1223578999999999999999999999999999999999999999999
Q ss_pred CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 634 AASD--HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 634 ~P~~--~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
+|+. +.++.++|.++..+|+.++|+..|++++.
T Consensus 138 ~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9986 55999999999999999999999999986
No 107
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.76 E-value=7.9e-19 Score=160.65 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=83.9
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (721)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~ 254 (721)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.++ ..+|.++ ++++++|+.+++|+|||++..++.++
T Consensus 25 ~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~--~~~~~~f~~~l~~~Ytg~~~~~~~~~ 97 (116)
T 3fkc_A 25 QRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELS--FIRAEIFAEILNYIYSSKIVRVRSDL 97 (116)
T ss_dssp HHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHTTSCCCSCCHHH
T ss_pred HHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHhhcCCCcCCCCHHH
Confidence 3467889999999999999999999999999999999986 5689998 59999999999999999993399999
Q ss_pred HHHHHHHhhhcChhhHHH
Q 004984 255 LLEILIFANKFCCERLKD 272 (721)
Q Consensus 255 v~~LL~aAd~~~v~~L~~ 272 (721)
+.+++.+|++|+++.|++
T Consensus 98 ~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 98 LDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHhCccccCc
Confidence 999999999999999874
No 108
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=3.2e-18 Score=172.69 Aligned_cols=202 Identities=10% Similarity=-0.028 Sum_probs=125.6
Q ss_pred HhhHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHhh----cCChhHHHHHHHHHHhc--------CCC
Q 004984 418 IAGLARLGYIKGHKLWAYEKLNSVISSV--------TPLGWMYQERSL----YCEGDKRWEDLDKATAL--------DPT 477 (721)
Q Consensus 418 ~~~lg~~~~~~G~~~~A~~~~~~aI~~~--------~~~~~ay~~rg~----~~~~~eAl~d~~kAieL--------dP~ 477 (721)
+..+|.++..+|++++|+..+.++++.. |..+.++.+.|. .++.++|+..|++|+++ +|.
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 125 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 4444555555555555555555544431 223333433332 13335555566666665 577
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 004984 478 LSYPYMYRASSLMTKQNVEAALAEINRILGF--------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (721)
Q Consensus 478 ~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l--------~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~ 548 (721)
...+|.++|.++..+|++++|+..|++++++ .|. ...+.++|.++..+|++++|+..|++++++.|.....
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999999999998 554 5667789999999999999999999999985542100
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc------CChHH
Q 004984 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL------NCPEA 622 (721)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l------g~~ee 622 (721)
...|....++...+...... ..+.+
T Consensus 206 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T 3edt_B 206 -------------------------------------------------SVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236 (283)
T ss_dssp -------------------------------------------------SCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred -------------------------------------------------CcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 00111122222222222221 22333
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
+...++.+....|+.+.++.++|.++..+|++++|+..|++|+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4444444444567777888888888888888888888888888764
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.76 E-value=1.9e-17 Score=173.51 Aligned_cols=168 Identities=15% Similarity=-0.002 Sum_probs=146.6
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 004984 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (721)
Q Consensus 475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~ 553 (721)
-|+...++..+|..+.+.|++++|+..|+++++++|+ ++.++.+|.++..+|++++|+..|+++++++|++....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~---- 188 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG---- 188 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH----
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH----
Confidence 4999999999999999999999999999999999996 78889999999999999999999999999999753211
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004984 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (721)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (721)
...+.........+. |+..++++++.+|+++++++++|.++..+|++++|++.|+++++.
T Consensus 189 --~~~~~~l~~~~~~~~------------------a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 189 --LVAQIELLXQAADTP------------------EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp --HHHHHHHHHHHTSCH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhhcccCc------------------cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 111111111112222 478899999999999999999999999999999999999999999
Q ss_pred CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 634 AASD--HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 634 ~P~~--~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
+|++ +.++.++|.++..+|+.++|+..|+++++
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999 89999999999999999999999999986
No 110
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.75 E-value=9.2e-17 Score=173.42 Aligned_cols=235 Identities=11% Similarity=-0.028 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------ 447 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--------~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~------ 447 (721)
....++.+|..+...|++++|+..|++|+++. ...++..+|.++..+|+++.|+..+.+|++..+.
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 34566789999999999999999999999871 2456888999999999999999999999987432
Q ss_pred -cHHHHHHHhh----cCChhHHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC
Q 004984 448 -LGWMYQERSL----YCEGDKRWEDLDKATALDPT------LSYPYMYRASSLMTKQNVEAALAEINRILG-----FKLA 511 (721)
Q Consensus 448 -~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~------~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~-----l~P~ 511 (721)
.+.++.+.|. .++.++|+..|++|+++.+. .+.++.++|.++..+|++++|+..|++|++ -+|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 2334444442 24457788888887776432 245777788888888888888888888877 5554
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 004984 512 -LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (721)
Q Consensus 512 -~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al 590 (721)
+..+.++|.++..+|++++|+..+++++++.+...
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------------- 295 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS-------------------------------------------- 295 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--------------------------------------------
Confidence 45566677778888888888888888877765531
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
+|.....+...+.++...|. .++|+..+++ ....|+..+.+..+|.+++.+|++++|+..|++|+++
T Consensus 296 ---------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 296 ---------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp ---------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11111122334445555565 6777777766 3445566778889999999999999999999999987
Q ss_pred CCC
Q 004984 668 KRS 670 (721)
Q Consensus 668 ~~~ 670 (721)
...
T Consensus 366 ~~~ 368 (378)
T 3q15_A 366 QED 368 (378)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=2.9e-17 Score=187.57 Aligned_cols=161 Identities=12% Similarity=-0.018 Sum_probs=123.0
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
+.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999996 788889999999999999999998888
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004984 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (721)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (721)
++++|++ +.+++++|.++..+|
T Consensus 84 l~~~p~~----------------------------------------------------------~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 84 SDAAPEH----------------------------------------------------------PGIALWLGHALEDAG 105 (568)
T ss_dssp HHHCTTC----------------------------------------------------------HHHHHHHHHHHHHTT
T ss_pred HhcCCCC----------------------------------------------------------HHHHHHHHHHHHHcC
Confidence 8888876 234667777888888
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDT---SHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (721)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~---G~~deAl~~ye~Ai~i~~~~~-a~~~~~ 678 (721)
++++|+..|++|++++|++.+++.++|.++..+ |++++|++.|+++++++|+.. +|++.+
T Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 106 QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 888888888888888888888888888888888 888888888888888887765 665554
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.74 E-value=5.9e-18 Score=178.56 Aligned_cols=207 Identities=12% Similarity=0.024 Sum_probs=164.1
Q ss_pred hccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhc
Q 004984 395 LRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATAL 474 (721)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieL 474 (721)
..|++++|.+.+++|.+..... ++. ..|++++|...|+++ +.+|...|++ ++|+..|.+|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~-~~~------~~~~~~~A~~~~~~a-------~~~~~~~g~~---~~A~~~~~~al~~ 65 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS-FMK------WKPDYDSAASEYAKA-------AVAFKNAKQL---EQAKDAYLQEAEA 65 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC-SSS------CSCCHHHHHHHHHHH-------HHHHHHTTCH---HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc-ccC------CCCCHHHHHHHHHHH-------HHHHHHcCCH---HHHHHHHHHHHHH
Confidence 4678999999999998763321 111 158999999999887 4567777666 9999999999999
Q ss_pred CCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 475 DPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 475 dP~~------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
.|.. +.+|.++|.+|..+|++++|+..|++|+++.+. ...+.+.|.+|.. |++++|+..|++|+++
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 8755 668999999999999999999999999998431 2456678888988 9999999999999998
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 004984 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (721)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e 621 (721)
.|...... ..+.+++++|.++..+|+++
T Consensus 145 ~~~~~~~~----------------------------------------------------~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 145 FENEERLR----------------------------------------------------QAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp HHHTTCHH----------------------------------------------------HHHHHHHHHHHHHHHTTCHH
T ss_pred HHhCCChh----------------------------------------------------HHHHHHHHHHHHHHHcCCHH
Confidence 77531000 01345778888888899999
Q ss_pred HHHHHHHHHHHhCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 622 AAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 622 eAl~~~~~Al~l~P~~~------ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+|+..|++|+++.|++. .++.++|.+++.+|++++|+..|++++ ++|+|.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 99999999998877654 477888888888899999999999999 888764
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=2e-16 Score=158.87 Aligned_cols=169 Identities=8% Similarity=-0.008 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHH-----------
Q 004984 462 DKRWEDLDKATALDPTLS---YPYMYRASSLMTKQNVEAALAEINRILGFKLA-L---ECLELRFCFFL----------- 523 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~---~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~---~~~~~R~~~~~----------- 523 (721)
++|+..|+++++.+|+++ .+++++|.++..+|++++|+..|+++++++|+ + .+++.+|.++.
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 100 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF 100 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 444444555555555442 45666666666666666666666666666664 2 24455555544
Q ss_pred -------hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984 524 -------ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (721)
Q Consensus 524 -------~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa 596 (721)
.+|++++|+..|+++++..|+...+. .....+ ..+...
T Consensus 101 ~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~------~a~~~l-----------------------------~~~~~~ 145 (225)
T 2yhc_A 101 GVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT------DATKRL-----------------------------VFLKDR 145 (225)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCTTCTTHH------HHHHHH-----------------------------HHHHHH
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH------HHHHHH-----------------------------HHHHHH
Confidence 47899999999999999999985321 110000 001111
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~ 671 (721)
.....+.+|.++.+.|++++|+..|+++++..|+++ ++++.+|.+++.+|++++|++.++++....|+.
T Consensus 146 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 ------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 122446789999999999999999999999999986 789999999999999999999999999888763
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.73 E-value=2.7e-16 Score=170.10 Aligned_cols=177 Identities=12% Similarity=0.034 Sum_probs=147.9
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-C-CHHHHHHHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKLA-LECLELRFCFFLAL-E-DYQAALCDVQ 536 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg-~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l-g-d~eeAl~d~~ 536 (721)
.++|+..++++|.+||++..+|++|+.++..+| .+++++..++++|..+|+ +..|+.|++++..+ + ++++++..++
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 378999999999999999999999999999999 499999999999999996 88899999998888 8 9999999999
Q ss_pred HHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984 537 AILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (721)
Q Consensus 537 kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~ 615 (721)
++++++|++.. +.-|.-+... ...++.+. .. .-.+++..++++|+.+|+|..+|++|+.++.
T Consensus 150 k~L~~dpkNy~AW~~R~wvl~~-------l~~~~~~~--~~--------~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 150 GSLLPDPKNYHTWAYLHWLYSH-------FSTLGRIS--EA--------QWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHTSSCTTCHHHHHHHHHHHHH-------HHHTTCCC--HH--------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHhCCCCHHHHHHHHHHHHH-------hccccccc--hh--------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999843 2223333332 22233100 00 0012488999999999999999999999999
Q ss_pred HcCC-------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH
Q 004984 616 RLNC-------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 654 (721)
Q Consensus 616 ~lg~-------~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~ 654 (721)
++++ .+++++.+++++.++|+|..+++++.+++...|+-
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9998 78999999999999999999999999999998874
No 115
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.73 E-value=1.3e-16 Score=150.41 Aligned_cols=166 Identities=14% Similarity=0.032 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc-
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY- 458 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~- 458 (721)
....++.+|..+...|++++|+..|+++++.. ...++..+|.++...|++++|+..+.++++..|+.+.++...|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35667889999999999999999999999884 456778899999999999999999999999999988888877653
Q ss_pred ---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004984 459 ---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (721)
Q Consensus 459 ---~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d 534 (721)
++.++|+..|+++++++|+++.++..+|.++..+|++++|+..++++++.+|+ +..+..+|.++..+|++++|+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 66799999999999999999999999999999999999999999999999996 78888999999999999999999
Q ss_pred HHHHHhhCCCchh
Q 004984 535 VQAILTLSPDYRM 547 (721)
Q Consensus 535 ~~kal~L~P~~~~ 547 (721)
|+++++++|++..
T Consensus 167 ~~~~~~~~~~~~~ 179 (186)
T 3as5_A 167 FKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHCCCG
T ss_pred HHHHHHcCCCchh
Confidence 9999999999843
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=6.3e-17 Score=162.53 Aligned_cols=192 Identities=13% Similarity=0.030 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHHH
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW---MYQE 454 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-----~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~---ay~~ 454 (721)
..+++++|..+...|+|++|+..|+++++..|. .+++.+|.+++.+|++++|+..|+++++.+|+... +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 456789999999999999999999999987432 47889999999999999999999999999997653 7777
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH-----------------
Q 004984 455 RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE----------------- 516 (721)
Q Consensus 455 rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~----------------- 516 (721)
+|... ..+++.....|..++.++.++|++++|+..|+++|+..|+ +....
T Consensus 84 ~g~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 84 RGLTN------------MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp HHHHH------------HHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH------------HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 76541 1122444556777888888889999999999999999886 33321
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (721)
Q Consensus 517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa 596 (721)
.+|.++...|++++|+..|+++++..|+..
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-------------------------------------------------- 181 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQ-------------------------------------------------- 181 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSH--------------------------------------------------
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCC--------------------------------------------------
Confidence 233444444555555554444444444431
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (721)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (721)
..+++++++|.++.++|++++|+..++++....|++.+-+
T Consensus 182 -----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 221 (225)
T 2yhc_A 182 -----ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH 221 (225)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred -----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence 0126789999999999999999999999999999987654
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.72 E-value=5.1e-17 Score=149.59 Aligned_cols=121 Identities=15% Similarity=0.097 Sum_probs=105.9
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 004984 503 NRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (721)
Q Consensus 503 ~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (721)
.|+..+||+ .+.+.++|..+.+.|+|++|+..|+++++++|++
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------ 46 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------------------------------------ 46 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------
Confidence 355668897 6778889999999999999999888888877775
Q ss_pred ccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (721)
Q Consensus 582 ~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y 661 (721)
+.+|+++|.++.++|++++|+..+++|++++|+++++++++|.+++.+|++++|+..|
T Consensus 47 ----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 47 ----------------------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAY 104 (126)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHH-HHHHHHHHh
Q 004984 662 EESIQMKRSFE-AFFLKAYAL 681 (721)
Q Consensus 662 e~Ai~i~~~~~-a~~~~~~~~ 681 (721)
++|++++|++. |....+.+|
T Consensus 105 ~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 105 EDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCcCCHHHHHHHHHhc
Confidence 99999999988 777666543
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=7.5e-19 Score=188.78 Aligned_cols=147 Identities=14% Similarity=0.011 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHhc
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----------------ECLELRFCFFLAL 525 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~----------------~~~~~R~~~~~~l 525 (721)
++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++||+++|+. ..+.++|.++..+
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788888999999999999999999999999999999999999999999963 6778899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 004984 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (721)
Q Consensus 526 gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~ 605 (721)
|++++|+.+|+++++++|++ +.
T Consensus 210 g~~~~A~~~~~~al~~~p~~----------------------------------------------------------~~ 231 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNN----------------------------------------------------------EK 231 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----------------------------------------------------------HH
T ss_pred CCHHHHHHHHHHHHHhCCCc----------------------------------------------------------HH
Confidence 99999998888888887775 45
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 004984 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQ 666 (721)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA-l~~ye~Ai~ 666 (721)
+|+++|.++..+|++++|+..|++|++++|++.+++.++|.++..+|++++| -..|++.+.
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999 456777664
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.72 E-value=4.5e-17 Score=176.13 Aligned_cols=191 Identities=11% Similarity=0.027 Sum_probs=164.4
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCchh-
Q 004984 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSPDYRM- 547 (721)
Q Consensus 471 AieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg-d~eeAl~d~~kal~L~P~~~~- 547 (721)
.|...|++..++.++..++...+..++|+..++++|.++|+ ...|+.|+.++..+| ++++++..+++++..+|++..
T Consensus 46 ~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a 125 (349)
T 3q7a_A 46 PIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV 125 (349)
T ss_dssp CBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred eeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Confidence 45567777889999999999999999999999999999996 888999999999999 599999999999999999843
Q ss_pred hhhhHHHHHHHHHHHHhhh-hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH-----
Q 004984 548 FEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE----- 621 (721)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e----- 621 (721)
++.|.-+.... .. .+++ ++..++++|+.+|+|..+|+.|+.++.++|+++
T Consensus 126 W~hR~wlL~~l------~~~~~~~------------------EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 126 WHHRLLLLDRI------SPQDPVS------------------EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp HHHHHHHHHHH------CCSCCHH------------------HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHh------cCCChHH------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchh
Confidence 33333222221 01 2222 488999999999999999999999999999988
Q ss_pred ---HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 004984 622 ---AAMRSLQLARQHAASDHERLVYEGWILYDTSH-------CEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (721)
Q Consensus 622 ---eAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~-------~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (721)
++++.++++++.+|.|..|+.++|+++..+|+ ++++++.++++|.++|+++ ||+.+...+...+
T Consensus 182 ~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998 7999999999999999999 9977666665443
No 120
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.71 E-value=2.7e-15 Score=160.55 Aligned_cols=302 Identities=14% Similarity=0.062 Sum_probs=221.7
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhh-H-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--------hhhH
Q 004984 349 CLLSEVAMNLDPRSDKTVCFLERLLESAE-T-DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--------IYSI 418 (721)
Q Consensus 349 ~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~-~-~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--------~~A~ 418 (721)
.+..++..... +.+....++++++...+ . .+....++..+|.++...|++++|+..|++|+++.+ ..++
T Consensus 18 ~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 18 ALRAQVAINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44555555433 55667778887665432 2 233456788999999999999999999999998721 2236
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCC-----hHH
Q 004984 419 AGLARLGYIKGHKLWAYEKLNSVISSV--------TPLGWMYQERSL----YCEGDKRWEDLDKATALDPTL-----SYP 481 (721)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~--------~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~-----~~a 481 (721)
.++|.++..+|++++|+..+.++++.. |..+.++.++|. .|+.++|...|++++++.|.. ..+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 789999999999999999999999874 333445554543 255699999999999998864 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 004984 482 YMYRASSLMTKQNVEAALAEINRILGFKLA---LECLE-----LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (721)
Q Consensus 482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~---~~~~~-----~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~ 553 (721)
|.++|.++...|++++|+..+++++++.+. +..+. .++.++...|++++|+..++++++..|....+. ..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~ 254 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL--QG 254 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG--HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh--HH
Confidence 999999999999999999999999987432 11221 244568899999999999999999887642111 11
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHH
Q 004984 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSL 627 (721)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~ 627 (721)
.....+.+.....++++| +..++++++..+.. ..++..+|.++..+|++++|.+.+
T Consensus 255 ~~~~la~~~~~~g~~~~A------------------~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPA------------------EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 223334444444555555 67788887775542 358889999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 004984 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (721)
Q Consensus 628 ~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~ 678 (721)
++|+++.+..+.. ..+.+.| +.....+++.+...|..+++--++
T Consensus 317 ~~al~~~~~~g~~-----~~~~~~g--~~~~~ll~~~~~~~~~~~~~~~~~ 360 (373)
T 1hz4_A 317 LDALKLANRTGFI-----SHFVIEG--EAMAQQLRQLIQLNTLPELEQHRA 360 (373)
T ss_dssp HHHHHHHHHHCCC-----HHHHTTH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHhccccHH-----HHHHHcc--HHHHHHHHHHHhCCCCchHHHHHH
Confidence 9999998764322 2244455 677788888899998877766555
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.70 E-value=2.1e-17 Score=173.67 Aligned_cols=200 Identities=12% Similarity=0.064 Sum_probs=146.5
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH-------------
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYMYR-------ASSLMTKQNVEAALAEINRILGFKLA-LECLEL------------- 517 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~~r-------g~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~------------- 517 (721)
++.++|...|.+|++++|+.+++|.+| +.++..++++.+++..+++++++.|+ ...++.
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 344667777777777777777777777 77777777777777777777777664 222222
Q ss_pred --------HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 004984 518 --------RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (721)
Q Consensus 518 --------R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a 589 (721)
.+.++..+|+|++|.+.|+.++..+|++ . +.+.++.+....++|++|
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~------~-~~~~~a~l~~~~~r~~dA------------------ 154 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH------L-VAWMKAVVYGAAERWTDV------------------ 154 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH------H-HHHHHHHHHHHTTCHHHH------------------
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch------H-HHHHHHHHHHHcCCHHHH------------------
Confidence 4456777777777777777777777765 3 445555666666777777
Q ss_pred HHHHHHHHHhC-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 590 LSVIYQMLESD-AP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--AS-DHERLVYEGWILYDTSHCEEGLRKAEES 664 (721)
Q Consensus 590 l~~~~qaL~l~-P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~--P~-~~ea~~~~G~~Ly~~G~~deAl~~ye~A 664 (721)
+..+++++... |. ...+++++|.++..+|++++|++.|++|+.-. |. ..++++++|++|..+|+.+||...|+++
T Consensus 155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444332 11 14589999999999999999999999999655 65 7789999999999999999999999999
Q ss_pred HhcCCCHH-HHHHHHHHhhccCCCC
Q 004984 665 IQMKRSFE-AFFLKAYALADSSQDS 688 (721)
Q Consensus 665 i~i~~~~~-a~~~~~~~~~~~~~~~ 688 (721)
++++|+ + ++ -+|.|.+.=|
T Consensus 235 ~a~~P~-~~~~----~aL~~~~~~~ 254 (282)
T 4f3v_A 235 QTTHPE-PKVA----AALKDPSYRL 254 (282)
T ss_dssp HHHSCC-HHHH----HHHHCTTCCC
T ss_pred HhcCCc-HHHH----HHHhCCCCCC
Confidence 999999 5 33 3456665533
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.69 E-value=2e-16 Score=152.56 Aligned_cols=155 Identities=14% Similarity=-0.044 Sum_probs=136.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----
Q 004984 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---- 458 (721)
Q Consensus 385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~---- 458 (721)
....+|..+...|++++|+..|++|++. ++..++.++|.++...|++++|+..++++++..| .+..+...+.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 3567899999999999999999999988 4566889999999999999999999999999999 66554443321
Q ss_pred -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 004984 459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCD 534 (721)
Q Consensus 459 -~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~eeAl~d 534 (721)
+...+|+..|++|++++|+++.+++++|.++..+|++++|+..|+++++++|+ +..+.+++.++..+|+.++|+..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12256899999999999999999999999999999999999999999999996 34778899999999999999999
Q ss_pred HHHHHh
Q 004984 535 VQAILT 540 (721)
Q Consensus 535 ~~kal~ 540 (721)
|++++.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999985
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.69 E-value=6.5e-17 Score=154.56 Aligned_cols=69 Identities=10% Similarity=-0.112 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|++|+++.|+.+
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 345666666666666666666666666666666666666777776666777777777777766666654
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=6.8e-16 Score=177.84 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=151.6
Q ss_pred HHHhcCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984 488 SLMTKQN-VEAALAEINRILGFKLA-LECLELRFCFFLALED----------YQAALCDVQAILTLSPDYRMFEGRVAAS 555 (721)
Q Consensus 488 ~l~~lg~-~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd----------~eeAl~d~~kal~L~P~~~~~~~~~~a~ 555 (721)
.++..|. .++|+..++++|+++|+ +.+|+.|+.++..+|+ +++|+..++++++.+|++.. +.
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~------aW 110 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG------TW 110 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------HH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH------HH
Confidence 3444554 56889999999999997 8899999999999999 99999999999999999843 33
Q ss_pred HHHHHHHHhhh--hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 004984 556 QLHMLVREHID--NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN-CPEAAMRSLQLARQ 632 (721)
Q Consensus 556 ~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg-~~eeAl~~~~~Al~ 632 (721)
+.++-+..... +|++ ++.+++++|++||.+..+|++||.++.++| .+++|++.+.++++
T Consensus 111 ~hR~w~l~~l~~~~~~~------------------el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWAR------------------ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp HHHHHHHHTCSSCCHHH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcccccHHH------------------HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 33333333333 3344 489999999999999999999999999999 99999999999999
Q ss_pred hCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCC
Q 004984 633 HAASDHERLVYEGWILYDT--------------SHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQ 686 (721)
Q Consensus 633 l~P~~~ea~~~~G~~Ly~~--------------G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~ 686 (721)
.+|+|..|++++|.++..+ +.+++|++.+++||.++|+.+ ||+.+++++....-
T Consensus 173 ~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 9999999999999999986 668999999999999999999 99999999987553
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.67 E-value=4.8e-18 Score=182.48 Aligned_cols=177 Identities=15% Similarity=0.094 Sum_probs=153.5
Q ss_pred hHHHHHHHH----HHhcCCCChHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 004984 462 DKRWEDLDK----ATALDPTLSYPYMYRASSLM------------TKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524 (721)
Q Consensus 462 ~eAl~d~~k----AieLdP~~~~ay~~rg~~l~------------~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~ 524 (721)
++|+..+++ ++.++|++ +|.++|.... .++++++|+..|+++++.+|+ ...+..+|.++..
T Consensus 82 e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~ 159 (336)
T 1p5q_A 82 ERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK 159 (336)
T ss_dssp HHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 666666777 77777776 6667776553 788999999999999999996 7888899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 004984 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (721)
Q Consensus 525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~ 604 (721)
+|++++|+..|++|++++|++.... .++..+++|..+
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~-------------------------------------------~~~~~~~~~~~~ 196 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFS-------------------------------------------NEEAQKAQALRL 196 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCC-------------------------------------------SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCC-------------------------------------------hHHHHHHHHHHH
Confidence 9999999999999999999973210 123455566678
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
.+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|++++|++. ++++.|.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999988 99998887764
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.67 E-value=1.5e-16 Score=152.09 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=102.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
.|+++++++|+++.+|+++|.++.++|++++|+..|+++++++|+ +..|+++|.++..+|++++|+..|+++++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 468899999999999999999999999999999999999999995 8888899999999999999999888888877776
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 004984 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (721)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (721)
+.+|+++|.++.++|++++|+.
T Consensus 104 ----------------------------------------------------------~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 104 ----------------------------------------------------------YTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHHH
Confidence 4578899999999999999999
Q ss_pred HHHHHHHhCCCCh
Q 004984 626 SLQLARQHAASDH 638 (721)
Q Consensus 626 ~~~~Al~l~P~~~ 638 (721)
.|++|+++.|+..
T Consensus 126 ~~~~al~l~~~~~ 138 (151)
T 3gyz_A 126 CFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCHH
Confidence 9999999999875
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=6.8e-16 Score=161.28 Aligned_cols=219 Identities=14% Similarity=0.086 Sum_probs=162.2
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (721)
Q Consensus 461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal 539 (721)
+++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++|++++|+ +..++++|.++..+|++++|+..|++++
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 377788889999999999999999999999999999999999999999996 7888999999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004984 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (721)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~ 619 (721)
+++|++....+... .... .......|. .......|.++.+...++.++ .|+
T Consensus 100 ~l~p~~~~~~~~~~-~~~~--~~~~~~~~~------------------------~~~~~~~~~~~~i~~~l~~l~--~~~ 150 (281)
T 2c2l_A 100 SLAKEQRLNFGDDI-PSAL--RIAKKKRWN------------------------SIEERRIHQESELHSYLTRLI--AAE 150 (281)
T ss_dssp HHHHHTTCCCCSHH-HHHH--HHHHHHHHH------------------------HHHHTCCCCCCHHHHHHHHHH--HHH
T ss_pred HhCccchhhHHHHH-HHHH--HHHHHHHHH------------------------HHHHHHHhhhHHHHHHHHHHH--HHH
Confidence 99998743332211 1111 011111111 222345677777777777665 799
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCHH--HHHHHHHHhhccCCCCC-------
Q 004984 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSFE--AFFLKAYALADSSQDSS------- 689 (721)
Q Consensus 620 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~-G~~deAl~~ye~Ai~i~~~~~--a~~~~~~~~~~~~~~~~------- 689 (721)
+++|++.+++|++++|++......++-++... +++++|...|+++.+-.+..+ .+|.=.+. .+---||-
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~-~~~~~dPv~~~~gh~ 229 (281)
T 2c2l_A 151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKIS-FELMREPCITPSGIT 229 (281)
T ss_dssp HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTT-CSBCSSEEECSSCCE
T ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCc-CCHhcCCeECCCCCE
Confidence 99999999999999999998888888888777 889999999999988644433 33322221 11222333
Q ss_pred -chhhHHHHHHHhhc-CCCCcc
Q 004984 690 -CSSTVVSLLEDALK-CPSDRL 709 (721)
Q Consensus 690 -~~~~~~~~~~~~~~-~~~~~~ 709 (721)
|.+.+...|++--. ||..+-
T Consensus 230 f~~~~i~~~~~~~~~~cP~~~~ 251 (281)
T 2c2l_A 230 YDRKDIEEHLQRVGHFNPVTRS 251 (281)
T ss_dssp EETTHHHHHHHHTCSSCTTTCC
T ss_pred ECHHHHHHHHHHCCCCCcCCCC
Confidence 24566667766433 998763
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.64 E-value=5.4e-15 Score=144.95 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHH
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~ 559 (721)
..++++|.++...|++++|+..|++++ +|++..+.++|.++..+|++++|+..|+++++++|++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------- 70 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-------------- 70 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--------------
Confidence 457889999999999999999999996 7788888889999999999999998888888777765
Q ss_pred HHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-
Q 004984 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH- 638 (721)
Q Consensus 560 ~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~- 638 (721)
+.+|+++|.++..+|++++|+..|++|+++.|++.
T Consensus 71 --------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 106 (213)
T 1hh8_A 71 --------------------------------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 106 (213)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSE
T ss_pred --------------------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccH
Confidence 34577888899999999999999999999888777
Q ss_pred ---------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 004984 639 ---------------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA 682 (721)
Q Consensus 639 ---------------ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~ 682 (721)
++++++|.+++.+|++++|+..|++|+++.|+.. +...+++...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 107 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp EECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 9999999999999999999999999999999875 5555555544
No 129
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=9.4e-15 Score=145.92 Aligned_cols=186 Identities=10% Similarity=-0.077 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCCh
Q 004984 400 DEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLS 479 (721)
Q Consensus 400 ~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~ 479 (721)
.+|+.+|++|.+.++..+++.+|.++...|++++|+.+|.+++ + ++++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~------------------------------~--~g~~ 50 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAA------------------------------A--QGDG 50 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------------H--TTCH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH------------------------------H--cCCH
Confidence 3688899999999999999999999988887777777665443 3 3466
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhh
Q 004984 480 YPYMYRASSLMTKQ----NVEAALAEINRILGFKL-ALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEG 550 (721)
Q Consensus 480 ~ay~~rg~~l~~lg----~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~----lgd~eeAl~d~~kal~L~P~~~~~~~ 550 (721)
.+++++|.+|.. + ++++|+..|++|++ + ++.+++++|.+|.. .+|+++|+..|+++++.+|..
T Consensus 51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~----- 122 (212)
T 3rjv_A 51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD----- 122 (212)
T ss_dssp HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-----
T ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-----
Confidence 777888888887 6 78888888888874 4 36777788888776 788888888888888777641
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHH
Q 004984 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRS 626 (721)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~ 626 (721)
+++.+++++|.++.. .+++++|+..
T Consensus 123 ---------------------------------------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 123 ---------------------------------------------------AAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred ---------------------------------------------------chHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 123456777778877 7888999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCCCHHHHHHH
Q 004984 627 LQLARQHAASDHERLVYEGWILYDT-S-----HCEEGLRKAEESIQMKRSFEAFFLK 677 (721)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~Ly~~-G-----~~deAl~~ye~Ai~i~~~~~a~~~~ 677 (721)
|++|+++ |.++++++++|.++... | ++++|+..|++|++.........+.
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999988 77888999999988764 3 8999999999999886655544443
No 130
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.64 E-value=4.1e-15 Score=169.77 Aligned_cols=159 Identities=9% Similarity=-0.067 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504 (721)
Q Consensus 429 G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~k 504 (721)
|++++|++.|+++++.+|+.+.+|.++|.. ++.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444444444444444444444433321 3346777778899999999999999999999999999999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccc
Q 004984 505 ILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS 583 (721)
Q Consensus 505 AL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~ 583 (721)
+++++|+ +..+.++|.++..+|++++|+..|+++++++|++
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------------------- 124 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-------------------------------------- 124 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------------------
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------------------
Confidence 9999996 7888899999999999999999888888888876
Q ss_pred ccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHHH
Q 004984 584 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL---NCPEAAMRSLQLARQHAASDHERLVYEG 645 (721)
Q Consensus 584 ~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l---g~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (721)
+.+++++|.++..+ |+.++|++.++++++.+|++.+.+..++
T Consensus 125 --------------------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 125 --------------------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp --------------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred --------------------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 23566778888888 8888888888888888888888877776
No 131
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.63 E-value=3.8e-17 Score=182.98 Aligned_cols=188 Identities=12% Similarity=0.059 Sum_probs=147.2
Q ss_pred cchHHHHHHHHH----HHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHH
Q 004984 397 KEYDEAEHLFEA----AVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT 472 (721)
Q Consensus 397 g~y~eA~~~f~~----AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAi 472 (721)
..+++|+..+++ +|.++|.++|...|... ..+.|+....|.. .....++|+..|++++
T Consensus 200 ~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~----------------~~ip~~~~l~y~~--~l~~~~~A~~~~~~~~ 261 (457)
T 1kt0_A 200 IGIDKALEKMQREEQCILYLGPRYGFGEAGKPK----------------FGIEPNAELIYEV--TLKSFEKAKESWEMDT 261 (457)
T ss_dssp HHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG----------------GTBCTTCCEEEEE--EEEEEECCCCGGGSCH
T ss_pred hHHHHHHHhCCCCCEEEEEECcccccCCCCCcc----------------cCCCCCCEEEEEh--hhhhcccCcchhhcCH
Confidence 367888887777 77777776554433211 1122211111100 1123378888999999
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----------------ECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~----------------~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
+++|+.+.+|+++|.++..+|++++|+..|++||+++|+. .++.++|.++..+|++++|+.+|+
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999963 677889999999999999988888
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (721)
+|++++|++ +.+|+++|.++..
T Consensus 342 ~al~~~p~~----------------------------------------------------------~~a~~~~g~a~~~ 363 (457)
T 1kt0_A 342 KALGLDSAN----------------------------------------------------------EKGLYRRGEAQLL 363 (457)
T ss_dssp HHHHHSTTC----------------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHhcCCcc----------------------------------------------------------HHHHHHHHHHHHH
Confidence 888877775 4568899999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004984 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (721)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ 660 (721)
+|++++|+..|++|++++|++.+++.++|.++..+|++++|...
T Consensus 364 ~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 364 MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998864
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=3e-15 Score=141.45 Aligned_cols=122 Identities=12% Similarity=-0.035 Sum_probs=100.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
.|++|++++|+++.+++++|.++...|++++|+..|+++++++|+ +..++++|.++..+|++++|+..|+++++++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 478899999999999999999999999999999999999999885 7778888888888888888888887777777765
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 004984 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (721)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (721)
+.+++++|.++..+|++++|+.
T Consensus 89 ----------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 89 ----------------------------------------------------------PRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp ----------------------------------------------------------THHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------------------------------------chHHHHHHHHHHHcCCHHHHHH
Confidence 3457788888888888888888
Q ss_pred HHHHHHHhCCCChhHHHHHHH
Q 004984 626 SLQLARQHAASDHERLVYEGW 646 (721)
Q Consensus 626 ~~~~Al~l~P~~~ea~~~~G~ 646 (721)
.|++|++++|++++....+..
T Consensus 111 ~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 111 GLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp HHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHCcCCCcchHHHHH
Confidence 888888888888776444333
No 133
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.63 E-value=8.2e-15 Score=153.37 Aligned_cols=142 Identities=16% Similarity=0.074 Sum_probs=74.4
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLEL-RFCFFLALEDYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 468 ~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~-R~~~~~~lgd~eeAl~d~~kal~L~P~~~ 546 (721)
|++|++++|+++.++.++|.++.++|++++|+..++++++.+|++..... .+..+...|+.++|+..|+++++++|++
T Consensus 140 ~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~- 218 (287)
T 3qou_A 140 LXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED- 218 (287)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc-
Confidence 34444444444444444444444444444444444444444444222221 2233444444444444444444444444
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC--hhHHHHHHHHHHHcCChHHHH
Q 004984 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK--GVLYFRQSLLLLRLNCPEAAM 624 (721)
Q Consensus 547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~--~~~~~~~g~~L~~lg~~eeAl 624 (721)
..+...++.+.....++++| +..++++++.+|++ +.++.++|.++..+|+.++|.
T Consensus 219 -----~~~~~~la~~l~~~g~~~~A------------------~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 219 -----AALATQLALQLHQVGRNEEA------------------LELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred -----HHHHHHHHHHHHHcccHHHH------------------HHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 12223333333333333333 44444445555544 678889999999999999999
Q ss_pred HHHHHHHHh
Q 004984 625 RSLQLARQH 633 (721)
Q Consensus 625 ~~~~~Al~l 633 (721)
..|++++..
T Consensus 276 ~~~r~al~~ 284 (287)
T 3qou_A 276 SXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999863
No 134
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.62 E-value=1e-15 Score=147.54 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------------LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------------~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
++.+.++|+.+..+|+|++|+..|++||+++|+ ..+|.++|.++..+|+|++|+.+|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l---- 86 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY---- 86 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 467889999999999999999999999999997 127889999999999999999999999876
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH----HHHHHHHHHcCChH
Q 004984 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY----FRQSLLLLRLNCPE 621 (721)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~----~~~g~~L~~lg~~e 621 (721)
|+++++++|.++.+| +|+|.+|..+|+++
T Consensus 87 -----------------------------------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~e 119 (159)
T 2hr2_A 87 -----------------------------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGA 119 (159)
T ss_dssp -----------------------------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHH
Confidence 355677788888888 99999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHH
Q 004984 622 AAMRSLQLARQHAASDHERLVYE 644 (721)
Q Consensus 622 eAl~~~~~Al~l~P~~~ea~~~~ 644 (721)
||+.+|++|++++|+++.+.--+
T Consensus 120 EAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 120 EAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999999988764433
No 135
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.62 E-value=4.6e-15 Score=156.37 Aligned_cols=207 Identities=12% Similarity=0.019 Sum_probs=140.3
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc------HHHHHHHhh----cCChhHHHH
Q 004984 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL------GWMYQERSL----YCEGDKRWE 466 (721)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~------~~ay~~rg~----~~~~~eAl~ 466 (721)
+++++|+..|++| |.++..+|++++|+..|.+++++++.. +.+|.+.|. .+++++|+.
T Consensus 30 ~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 30 PDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp CCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5566666655554 334555566666666666665554321 233333332 134477777
Q ss_pred HHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 004984 467 DLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALEDYQAALC 533 (721)
Q Consensus 467 d~~kAieLdP~~------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd~eeAl~ 533 (721)
.|++|+++.++. +.+|.++|.+|.. |++++|+..|++|+++.|. ...+.+.|.++..+|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777774432 5789999999999 9999999999999998763 3456778999999999999999
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH
Q 004984 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (721)
Q Consensus 534 d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~ 613 (721)
.|++++++.|++... +..+.+++++|.+
T Consensus 177 ~~~~al~~~~~~~~~----------------------------------------------------~~~~~~~~~~g~~ 204 (307)
T 2ifu_A 177 SLQKEKSMYKEMENY----------------------------------------------------PTCYKKCIAQVLV 204 (307)
T ss_dssp HHHHHHHHHHHTTCH----------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCh----------------------------------------------------hHHHHHHHHHHHH
Confidence 999999998775210 0112457889999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhH-----HHHHHHHHHhcCCHHHHHH--HHHHHHhcCCC
Q 004984 614 LLRLNCPEAAMRSLQLARQHAASDHER-----LVYEGWILYDTSHCEEGLR--KAEESIQMKRS 670 (721)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~ea-----~~~~G~~Ly~~G~~deAl~--~ye~Ai~i~~~ 670 (721)
+..+|++++|+..|++++ ++|+.... +..++.. +..|+.++.-. .|.....++|.
T Consensus 205 ~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~-~~~~d~~~~~~~~~~~~~~~ld~~ 266 (307)
T 2ifu_A 205 QLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQA-YDEQDEEQLLRVCRSPLVTYMDND 266 (307)
T ss_dssp HHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHH-HHTTCHHHHHHHTTSHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHH-HHhcCHHHHHHHHhCchhhhhhHH
Confidence 999999999999999999 99987654 2333332 46676543322 24444444443
No 136
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.61 E-value=2.4e-14 Score=154.49 Aligned_cols=226 Identities=12% Similarity=0.010 Sum_probs=143.0
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (721)
Q Consensus 417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~ 496 (721)
.++.+|..+..+|++++|+..|.+|+++.+..+. +|..+.+|+++|.++..+|+++
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------~~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD------------------------DIEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC------------------------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC------------------------hHHHHHHHHHHHHHHHHcCCcH
Confidence 4556788888888888888888877766321100 1122345566666666666666
Q ss_pred HHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhh
Q 004984 497 AALAEINRILGFKLA--------LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 568 (721)
Q Consensus 497 eAl~~~~kAL~l~P~--------~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~ 568 (721)
+|+..+++|+++.+. ..++.+.|.++..+|++++|+..|++|+++.+....-.....+...++.+.....++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 666666666655321 123345556666666666666666666665432211112233344444444444444
Q ss_pred hHHHHHHhhhhccccccccchHHHHHHHHH-----hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCh
Q 004984 569 TIADCWLQLYDRWSSVDDIGSLSVIYQMLE-----SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-----ASDH 638 (721)
Q Consensus 569 ~~A~~~~~l~~~~~~~dd~~al~~~~qaL~-----l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-----P~~~ 638 (721)
++| +..++++++ .+|..+.+++++|.++.++|++++|+..+++|+++. |...
T Consensus 239 ~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 239 QMA------------------VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHH------------------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHH------------------HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 444 455555555 677788899999999999999999999999999994 4455
Q ss_pred hHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 004984 639 ERLVYEGWILYDTSH---CEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (721)
Q Consensus 639 ea~~~~G~~Ly~~G~---~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (721)
..+..++.++...|+ +++|+..+++. ...|... .+...|..+...+
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 567788888888899 99999888873 2333333 6667777766554
No 137
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=3.4e-13 Score=164.54 Aligned_cols=241 Identities=13% Similarity=-0.012 Sum_probs=149.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHH-HHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 004984 421 LARLGYIKGHKLWAYEKLNSVISSVTPL-GWMYQ-ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (721)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~~~~-~~ay~-~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eA 498 (721)
.|.++...|.+++|+..|.++- .+.. ...++ ..+.+ ++|++.+++ .+.+.+|.++|.++...|+++||
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~--~~~~A~~VLie~i~nl---drAiE~Aer-----vn~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD--VNTSAVQVLIEHIGNL---DRAYEFAER-----CNEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHHHHHhhH---HHHHHHHHh-----cCCHHHHHHHHHHHHhCCCHHHH
Confidence 5666677777777777777653 1111 12222 22222 444444333 35567777777777777777777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH---HHHHHHHhhhhhhHHHHHH
Q 004984 499 LAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ---LHMLVREHIDNWTIADCWL 575 (721)
Q Consensus 499 l~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~---~~~~l~~~~~~~~~A~~~~ 575 (721)
+..|.|| -+++.+...+.++.++|++++|++.|..|++.+|+......-+-++. ....+...+.....+ .|.
T Consensus 1125 IdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~a-d~~ 1199 (1630)
T 1xi4_A 1125 IDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNA-HIQ 1199 (1630)
T ss_pred HHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHH-HHH
Confidence 7777665 34555666667777777777777777777766654210000000111 111122222222222 344
Q ss_pred hhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------------------
Q 004984 576 QLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------------------- 635 (721)
Q Consensus 576 ~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P------------------- 635 (721)
+++++..+.++++ |...|.+| ..|.++|.+|.++|++++|++.+++|...++
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHH
Confidence 5666666666666 56666664 4788888888888888888888888855554
Q ss_pred ------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 004984 636 ------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS 684 (721)
Q Consensus 636 ------~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~ 684 (721)
.+++-+..++..+...|+|+||+..+|+++.++|.-. .|-..|.+++-.
T Consensus 1272 cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1272 CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 2556667788889999999999999999999998887 565667766554
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.60 E-value=3.2e-15 Score=139.13 Aligned_cols=127 Identities=12% Similarity=-0.073 Sum_probs=101.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 466 ~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~ 544 (721)
..|.++++++|+++.+++++|.++...|++++|+..|++++.++|+ +..++.+|.++..+|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3578888999999999999999999999999999999999998885 777888888888888888888888777777776
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 004984 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (721)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (721)
+ +.+++++|.++..+|++++|+
T Consensus 85 ~----------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 85 E----------------------------------------------------------PRFPFHAAECHLQLGDLDGAE 106 (142)
T ss_dssp C----------------------------------------------------------THHHHHHHHHHHHTTCHHHHH
T ss_pred C----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHH
Confidence 5 345777888888888888888
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHh
Q 004984 625 RSLQLARQHAASDHERLVYEGWILYD 650 (721)
Q Consensus 625 ~~~~~Al~l~P~~~ea~~~~G~~Ly~ 650 (721)
..|+++++++|++++....+..+.-.
T Consensus 107 ~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 107 SGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 88888888888888776655554433
No 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.60 E-value=4.6e-17 Score=182.29 Aligned_cols=150 Identities=12% Similarity=0.024 Sum_probs=128.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhh
Q 004984 491 TKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (721)
Q Consensus 491 ~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~ 569 (721)
.++++++|+..|+++++.+|+ ...+..+|.++..+|+|++|+..|++|++++|++..+..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------------- 306 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE------------------- 306 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-------------------
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh-------------------
Confidence 678899999999999999996 778889999999999999999999999999999843110
Q ss_pred HHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (721)
Q Consensus 570 ~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly 649 (721)
+...+++|....+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++
T Consensus 307 ------------------------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 307 ------------------------KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL 362 (457)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 01123344456889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984 650 DTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 650 ~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
.+|++++|+..|++|++++|++. ++.+.|.++..
T Consensus 363 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 363 LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998 99998887653
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.60 E-value=1.1e-15 Score=147.14 Aligned_cols=114 Identities=11% Similarity=-0.006 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (721)
Q Consensus 512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~ 591 (721)
...+.++|..+..+|+|++|+..|++||+++|++... +
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---------------------~--------------------- 48 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---------------------E--------------------- 48 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---------------------S---------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---------------------h---------------------
Confidence 3456778999999999999999999999999997421 0
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCChhHH----HHHHHHHHhcCCHHHHHHH
Q 004984 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-------AASDHERL----VYEGWILYDTSHCEEGLRK 660 (721)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-------~P~~~ea~----~~~G~~Ly~~G~~deAl~~ 660 (721)
++...|.++.+|.|+|.++.++|++++|+.+|++|+++ +|+++.++ +++|.+|..+|+++||+..
T Consensus 49 ----a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~ 124 (159)
T 2hr2_A 49 ----AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124 (159)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH
Confidence 12223445669999999999999999999999999999 99999999 9999999999999999999
Q ss_pred HHHHHhcCCCH
Q 004984 661 AEESIQMKRSF 671 (721)
Q Consensus 661 ye~Ai~i~~~~ 671 (721)
|++|++++|+.
T Consensus 125 y~kAlel~p~d 135 (159)
T 2hr2_A 125 FKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHhcCCCc
Confidence 99999999864
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.59 E-value=6.4e-15 Score=139.17 Aligned_cols=115 Identities=11% Similarity=-0.033 Sum_probs=102.6
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (721)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (721)
..|+++++++|+ ...++.+|.++...|++++|+..|+++++++|++
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------------- 54 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--------------------------------- 54 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---------------------------------
Confidence 467888888885 6777888889999999998888877777777665
Q ss_pred hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 004984 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (721)
Q Consensus 579 ~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl 658 (721)
+.+|+++|.++..+|++++|+..|++|++++|+++++++++|.+++.+|++++|+
T Consensus 55 -------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~ 109 (148)
T 2vgx_A 55 -------------------------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE 109 (148)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q 004984 659 RKAEESIQMKRSFE 672 (721)
Q Consensus 659 ~~ye~Ai~i~~~~~ 672 (721)
..|++|+++.|+..
T Consensus 110 ~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 110 SGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHHHHHHTTCG
T ss_pred HHHHHHHHHCcCCC
Confidence 99999999988743
No 142
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.59 E-value=3.7e-14 Score=142.76 Aligned_cols=182 Identities=16% Similarity=0.066 Sum_probs=151.6
Q ss_pred CchhHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc----------chhhHhhHHHHH
Q 004984 361 RSDKTVCFLERLLESAE-----TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG----------HIYSIAGLARLG 425 (721)
Q Consensus 361 rs~~~~~LLe~Lv~~a~-----~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~----------~~~A~~~lg~~~ 425 (721)
..+.+..+++++++... +......+++.+|.++...|++++|+..|++|+++. ...++..+|.++
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 34466667777665432 223456788999999999999999999999999772 234678899999
Q ss_pred HHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHhh----cCChhHHHHHHHHHHhc--------CCCChHHHHHH
Q 004984 426 YIKGHKLWAYEKLNSVISS--------VTPLGWMYQERSL----YCEGDKRWEDLDKATAL--------DPTLSYPYMYR 485 (721)
Q Consensus 426 ~~~G~~~~A~~~~~~aI~~--------~~~~~~ay~~rg~----~~~~~eAl~d~~kAieL--------dP~~~~ay~~r 485 (721)
..+|++++|+..+.++++. +|..+.++.++|. .++.++|+..|++|+++ +|..+.++.++
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999999998 4666777777765 36669999999999999 88899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-------------------------------------------------CC-HHHH
Q 004984 486 ASSLMTKQNVEAALAEINRILGFK-------------------------------------------------LA-LECL 515 (721)
Q Consensus 486 g~~l~~lg~~~eAl~~~~kAL~l~-------------------------------------------------P~-~~~~ 515 (721)
|.++..+|++++|+..|++++++. |. ...+
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999999999999862 22 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984 516 ELRFCFFLALEDYQAALCDVQAILTLS 542 (721)
Q Consensus 516 ~~R~~~~~~lgd~eeAl~d~~kal~L~ 542 (721)
..+|.++..+|++++|+..|++++++.
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 778899999999999999999999864
No 143
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=7.6e-14 Score=123.83 Aligned_cols=133 Identities=13% Similarity=0.135 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~ 558 (721)
.+|+.+|.++...|++++|+..|+++++.+|+ ...+...+.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------------- 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-------------
Confidence 57888899999999999999999999888885 6667778888888888888888777777766654
Q ss_pred HHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004984 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (721)
Q Consensus 559 ~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (721)
+.+++++|.++...|++++|+..++++++..|++.
T Consensus 69 ---------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 69 ---------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ---------------------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 34567788889999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
.++..+|.+++.+|++++|+..+++++.++|+
T Consensus 104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999886
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.57 E-value=2.6e-14 Score=140.02 Aligned_cols=134 Identities=14% Similarity=0.149 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCCh
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~ 461 (721)
..+.++++|..+...|++++|+..|++|+.. ...++.++|.++..+|++++|+.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~------------------------- 58 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEK------------------------- 58 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHH-------------------------
Confidence 4567788899999999999999999988744 45567777777777777665554
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H----------------HHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L----------------ECLELRFCFFLA 524 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~----------------~~~~~R~~~~~~ 524 (721)
.|++|++++|+++.+|.++|.++..+|++++|+..|++++++.|+ . ..++++|.++..
T Consensus 59 -----~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 59 -----AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp -----HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 556677777777778888888888888888888888888886663 3 566777888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCch
Q 004984 525 LEDYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 525 lgd~eeAl~d~~kal~L~P~~~ 546 (721)
+|++++|+..|+++++++|++.
T Consensus 134 ~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCHHHHHHHHHHHHTTCCSGG
T ss_pred ccCHHHHHHHHHHHHHcCcccc
Confidence 8888888888888888888763
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.57 E-value=1.2e-14 Score=152.64 Aligned_cols=204 Identities=10% Similarity=0.006 Sum_probs=123.0
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhH-------HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGL-------ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~l-------g~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~ 457 (721)
+..|+-+ .-+++.+|.+.|.+|++++| .++|.++ +.++...++..+++..+.
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~------------------ 71 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS------------------ 71 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH------------------
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH------------------
Confidence 4444444 46677777777777766643 4455555 445554444444444444
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHH---------------------HHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHH
Q 004984 458 YCEGDKRWEDLDKATALDPTLSYPYMY---------------------RASSLMTKQNVEAALAEINRILGFKLALECLE 516 (721)
Q Consensus 458 ~~~~~eAl~d~~kAieLdP~~~~ay~~---------------------rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~ 516 (721)
+++++.|+...++++ .|.+|.+.|+|++|.+.|+.++...|+....+
T Consensus 72 ------------~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~ 139 (282)
T 4f3v_A 72 ------------GSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAW 139 (282)
T ss_dssp ------------HTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHH
T ss_pred ------------HHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHH
Confidence 444444444444333 45566666666666666666666556422555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (721)
Q Consensus 517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa 596 (721)
.++.++.+.|||++|+..|+++.+..+++. ...+...++.+...+.++++| +..++++
T Consensus 140 ~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~----~~~a~~~LG~al~~LG~~~eA------------------l~~l~~a 197 (282)
T 4f3v_A 140 MKAVVYGAAERWTDVIDQVKSAGKWPDKFL----AGAAGVAHGVAAANLALFTEA------------------ERRLTEA 197 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTGGGCSCHHH----HHHHHHHHHHHHHHTTCHHHH------------------HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhhccCCccc----HHHHHHHHHHHHHHCCCHHHH------------------HHHHHHH
Confidence 566666666666666666665554422210 012344444444455555555 5556666
Q ss_pred HHhC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 004984 597 LESD--AP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644 (721)
Q Consensus 597 L~l~--P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (721)
+... |. .+++++++|.+|.++|+.++|...|+++++.+|+ +.+...+
T Consensus 198 ~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 198 NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 5433 44 5678999999999999999999999999999999 7765443
No 146
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.56 E-value=1.8e-12 Score=158.24 Aligned_cols=254 Identities=9% Similarity=0.001 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHh
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERS 456 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~------~~~ay~~rg 456 (721)
...|+++|.++...|++++|+..|.+| +..+++..+|.++.+.|++++|++.|..|++..++ .|.+|.+.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 567899999999999999999999886 77888999999999999999999999999977644 677787775
Q ss_pred hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 457 ~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
++ + ++++|- +..+...|.+.|..+.++|+|++|+..|++| ..|...+.++.++|++++|+..++
T Consensus 1182 rl---e-ele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1182 RL---A-ELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CH---H-HHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 54 5 466662 3445567889999999999999999999997 356667889999999999999999
Q ss_pred HHHhhCCCchh---hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHH
Q 004984 537 AILTLSPDYRM---FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSL 612 (721)
Q Consensus 537 kal~L~P~~~~---~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~ 612 (721)
+|...++=... ....+.....+..........+..+-....|+ +.+.++ ++..++++|.++|.+...+..+|.
T Consensus 1246 KA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe---~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1246 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQ---DRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred HhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHH---HcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 99554331100 00000000000000111122222222223343 345555 688999999999999999988888
Q ss_pred HHHH--cCChHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHhcCCHHHHH
Q 004984 613 LLLR--LNCPEAAMRSLQLARQHAA-----SDHERLVYEGWILYDTSHCEEGL 658 (721)
Q Consensus 613 ~L~~--lg~~eeAl~~~~~Al~l~P-----~~~ea~~~~G~~Ly~~G~~deAl 658 (721)
++.+ -++..|+++.|...+++.| .+++.+.....++..-|+++.|+
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 8776 6778899999999999988 88888888888888899999999
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.56 E-value=1.5e-14 Score=134.57 Aligned_cols=115 Identities=10% Similarity=-0.044 Sum_probs=100.0
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (721)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (721)
..|+++++++|+ ...++.+|..+...|++++|+..|+++++++|++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------------- 51 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--------------------------------- 51 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------------------------
Confidence 567888888885 6777888888999999999888887777777765
Q ss_pred hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 004984 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (721)
Q Consensus 579 ~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl 658 (721)
+.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+
T Consensus 52 -------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 52 -------------------------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAE 106 (142)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 4568889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q 004984 659 RKAEESIQMKRSFE 672 (721)
Q Consensus 659 ~~ye~Ai~i~~~~~ 672 (721)
..|++++++.|+..
T Consensus 107 ~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 107 SGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999998655
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.55 E-value=1.2e-13 Score=128.76 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~ 557 (721)
+..|..+|.++...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------------ 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence 467889999999999999999999999999995 7888889999999999999988888888777765
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (721)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (721)
+.+++++|.++..+|++++|+..++++++++|++
T Consensus 81 ----------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 81 ----------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 3467889999999999999999999999999999
Q ss_pred hhHHHHHHHH--HHhcCCHHHHHHHHHHHHhcC
Q 004984 638 HERLVYEGWI--LYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 638 ~ea~~~~G~~--Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
.+++.+++.+ +..+|++++|+..++++..+-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 115 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999666555 888999999999999887653
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=6.9e-14 Score=126.34 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=81.1
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (721)
Q Consensus 476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a 554 (721)
|..+..|.++|..+...|++++|+..|+++|+++|+ +..+.++|.++..+|++++|+.+|+++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--------- 71 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------
Confidence 445667777777777777777777777777777774 6666777777777777777777666666666654
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004984 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (721)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 634 (721)
+.+|+++|.++..+|++++|+..|+++++++
T Consensus 72 -------------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 -------------------------------------------------VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 2346667777777777777777777777777
Q ss_pred ------CCChhHHHHHHHHHH
Q 004984 635 ------ASDHERLVYEGWILY 649 (721)
Q Consensus 635 ------P~~~ea~~~~G~~Ly 649 (721)
|++.+++..++.+..
T Consensus 103 p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 103 AEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTTTHHHHHHHHHHHHH
T ss_pred cccCCchhHHHHHHHHHHHHH
Confidence 777766666665543
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.54 E-value=7.6e-14 Score=132.40 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=97.8
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 004984 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (721)
Q Consensus 474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~ 552 (721)
-+|..+.+|+.+|.+++..|++++|+..|+++|+++|+ +..+.++|.++..+|++++|+.+|+++++++|++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------- 78 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY------- 78 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------
Confidence 35667788888888888889999999999999888885 7778888888888888888888887777777765
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (721)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (721)
+.+|+++|.++..+|++++|+..|+++++
T Consensus 79 ---------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 79 ---------------------------------------------------SKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34577888888888888888888888888
Q ss_pred hCCCChhHHHHHHHHHHh
Q 004984 633 HAASDHERLVYEGWILYD 650 (721)
Q Consensus 633 l~P~~~ea~~~~G~~Ly~ 650 (721)
++|++.++++++|+....
T Consensus 108 ~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 108 AEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHSSSCCHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHH
Confidence 888888888888876543
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.53 E-value=1.1e-14 Score=142.59 Aligned_cols=168 Identities=10% Similarity=0.079 Sum_probs=114.4
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H--------------
Q 004984 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L-------------- 512 (721)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~-------------- 512 (721)
.++.....|.+ ++|.+.++...+-.|..+..+..+|.++...|++++|+..|++++++.|+ +
T Consensus 10 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 10 HSSGRENLYFQ---GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred hhhhhhhhhhc---cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 34444444444 55555556566666667788889999999999999999999999998885 4
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 004984 513 --ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (721)
Q Consensus 513 --~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al 590 (721)
..+.++|.++..+|++++|+.+|+++++++|++
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------------------------------------------- 121 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN--------------------------------------------- 121 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---------------------------------------------
Confidence 566778888888888888888777777776665
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
+.+++++|.++..+|++++|+..|++|++++|++.+++..+|.++..+|+.+++... .
T Consensus 122 -------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~---------~ 179 (198)
T 2fbn_A 122 -------------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKL---------T 179 (198)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred -------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHH---------H
Confidence 456788999999999999999999999999999999999999999998887776622 3
Q ss_pred HHHHHHHHHHhhccC
Q 004984 671 FEAFFLKAYALADSS 685 (721)
Q Consensus 671 ~~a~~~~~~~~~~~~ 685 (721)
|..+|.+|-.+.|-.
T Consensus 180 ~~~~f~~~~~~~~~~ 194 (198)
T 2fbn_A 180 FGGMFDKGPLYEEKK 194 (198)
T ss_dssp ---------------
T ss_pred HHHHhcccchhhccc
Confidence 445666666665543
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.52 E-value=7.7e-14 Score=145.64 Aligned_cols=168 Identities=11% Similarity=0.065 Sum_probs=140.7
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (721)
Q Consensus 476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a 554 (721)
|+.+.+++.+|.++...|++++|+..|++||+++|+ +..+.++|.++..+|++++|+.+|+++++++|++. .+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~ 74 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV------KA 74 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH------HH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HH
Confidence 778999999999999999999999999999999995 88889999999999999999999999999999984 35
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004984 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (721)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 634 (721)
...++.+.....++++| +..+.++++++|+++..+........ +...+...........
T Consensus 75 ~~~lg~~~~~~g~~~~A------------------~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 133 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEA------------------IANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRI 133 (281)
T ss_dssp HHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 55556666666677777 78999999999988655544333333 3344556666777789
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 635 P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
|.+++....+|-.+ .|++++|+..|++|++++|+..
T Consensus 134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHH
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchh
Confidence 99999999998876 7999999999999999999854
No 153
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.50 E-value=5.7e-14 Score=135.63 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=92.8
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC-CCC-cCCcceEEeCCCCCCHHHHHHHhhhhccCC--------------
Q 004984 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG-SFM-ESLCEDIDLSENNISPSGLRIISDFSVTGS-------------- 246 (721)
Q Consensus 184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~-~~~-Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~-------------- 246 (721)
|+|+. +|+.|.+||.+ |++|+||++||.+ ++. |+.+..|.|+ +|+..+|+.|++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~--~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLP--NVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECT--TSCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCC--CccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 77765 89999999999 9999999999998 888 7888899999 599999999999999998
Q ss_pred ------------CCCCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC--CHhhHHHHHHHhcccC
Q 004984 247 ------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAVELMGYAIEEN 299 (721)
Q Consensus 247 ------------l~~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~--~~~n~~~l~~~A~~~~ 299 (721)
+. ++.+++++|+.||++|++..|.+.|+++++.++. +++....++.....+.
T Consensus 80 ~~~~i~~wD~~F~~-id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t 145 (159)
T 2ast_A 80 RTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFT 145 (159)
T ss_dssp -CCCCCHHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSC
T ss_pred chhhhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence 76 8999999999999999999999999999999886 4555554444443333
No 154
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.50 E-value=7e-13 Score=117.52 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=90.1
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 004984 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (721)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~ 495 (721)
.+|.++...|++++|+..+.++++..|+...++...+. .++.++|+..|+++++++|+++.++.++|.++...|++
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33344444444444444444444444433333333221 13336666777788888888889999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984 496 EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 496 ~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~ 544 (721)
++|+..++++++..|+ ...+..++.++...|++++|+..|+++++++|+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999985 777788899999999999999999999999986
No 155
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.50 E-value=5.1e-13 Score=133.28 Aligned_cols=161 Identities=13% Similarity=-0.089 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhC----CHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKG----HKLWAYEKLNSVISSVTPLGWMYQERSL 457 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G----~~~~A~~~~~~aI~~~~~~~~ay~~rg~ 457 (721)
+..+++++|..+...+++++|+.+|++|++.++..+++.+|.++.. | ++++|+.+|.++++. ..+.++++.|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~~a~~~Lg~ 93 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSKSGEIVLAR 93 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999988 7 999999999999764 56777777764
Q ss_pred c--------CChhHHHHHHHHHHhcCC--CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 004984 458 Y--------CEGDKRWEDLDKATALDP--TLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFL 523 (721)
Q Consensus 458 ~--------~~~~eAl~d~~kAieLdP--~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~ 523 (721)
+ .+.++|+..|++|++.+| +++.+++++|.+|.. .+++++|+..|++|+++.+++.+.+++|.+|.
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 355999999999999999 569999999999999 99999999999999998446778889998887
Q ss_pred hc-C-----CHHHHHHHHHHHHhhCCCc
Q 004984 524 AL-E-----DYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 524 ~l-g-----d~eeAl~d~~kal~L~P~~ 545 (721)
.. | |+++|+..|++|++..+..
T Consensus 174 ~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 174 QGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 54 3 9999999999999997654
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.50 E-value=3.5e-14 Score=130.39 Aligned_cols=113 Identities=6% Similarity=0.031 Sum_probs=95.2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (721)
Q Consensus 477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~ 555 (721)
+.+.++.++|+++...|++++|+..|++||+++|+ +..+.++|.+|..+|++++|+.+|+++++++|++...+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------ 79 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY------ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh------
Confidence 44678999999999999999999999999999996 88889999999999999999999999999999873211
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (721)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (721)
. .-+.+|+++|.++..+|++++|+..|++|++..|
T Consensus 80 ~---------------------------------------------~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 80 K---------------------------------------------LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp H---------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred H---------------------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 0 0124577888888888999999999999888888
Q ss_pred CChhHH
Q 004984 636 SDHERL 641 (721)
Q Consensus 636 ~~~ea~ 641 (721)
+ ++..
T Consensus 115 ~-~~~~ 119 (127)
T 4gcn_A 115 D-PELV 119 (127)
T ss_dssp C-HHHH
T ss_pred C-HHHH
Confidence 5 4443
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.50 E-value=4.3e-14 Score=129.77 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=84.0
Q ss_pred CcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H-------HHHHHH
Q 004984 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L-------ECLELR 518 (721)
Q Consensus 447 ~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~-------~~~~~R 518 (721)
++|..++.+|++ ++|+..|++||+++|+++.+|.++|.+|..+|++++|+.+|++||+++|+ . ..+..+
T Consensus 13 ~lG~~~~~~~~~---~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 13 DLGNAAYKQKDF---EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 355666666555 78888889999999999999999999999999999999999999999884 2 356678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 519 FCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 519 ~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
|.++..+|++++|+..|+++++++|+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 999999999999999999999999984
No 158
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.49 E-value=8.2e-13 Score=137.61 Aligned_cols=179 Identities=9% Similarity=-0.015 Sum_probs=132.4
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE------CLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (721)
Q Consensus 475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~------~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~ 547 (721)
+|+....+...+..+...|++++|+..++++++..|. .. .++..|.++...|++++|+..|++++++.+....
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4455556677777888888888888888888877664 21 1234566777778888888888888877665433
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH---HhCCCCh----hHHHHHHHHHHHcCCh
Q 004984 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML---ESDAPKG----VLYFRQSLLLLRLNCP 620 (721)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL---~l~P~~~----~~~~~~g~~L~~lg~~ 620 (721)
..+...+....+.+.....++++| +..+++|+ +..|.+. .+++++|.++..+|++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A------------------~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKG------------------IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 333344555555555555555555 66777777 5556543 6899999999999999
Q ss_pred HHHHHHHHHHHHhCCC------ChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCH
Q 004984 621 EAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEG-LRKAEESIQMKRSF 671 (721)
Q Consensus 621 eeAl~~~~~Al~l~P~------~~ea~~~~G~~Ly~~G~~deA-l~~ye~Ai~i~~~~ 671 (721)
++|+..+++|+++.++ -+.+++++|.++..+|++++| ...|++|+.+...+
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999764 278999999999999999999 77799999875433
No 159
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.49 E-value=3.9e-13 Score=120.28 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=106.8
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 004984 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (721)
Q Consensus 474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~ 552 (721)
-.|..+.+|+.+|.++...|++++|+..|+++++++|+ ...+..+|.++..+|++++|+..|+++++++|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------- 83 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------- 83 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-------
Confidence 35777889999999999999999999999999999995 7888889999999999999988888887777765
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (721)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (721)
+.+++++|.++..+|++++|+..++++++
T Consensus 84 ---------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 84 ---------------------------------------------------IKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34677888999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHhcCC
Q 004984 633 HAASDHERLVYEGWILYDTSH 653 (721)
Q Consensus 633 l~P~~~ea~~~~G~~Ly~~G~ 653 (721)
++|++.+++..+|.++..+|+
T Consensus 113 ~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 113 LDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HCGGGTHHHHHHHHHHHHHTC
T ss_pred hCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999988775
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=2.7e-13 Score=120.31 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=109.5
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 004984 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG 550 (721)
Q Consensus 472 ieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~ 550 (721)
.+.+|+.+.+|..+|.++...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----- 79 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----- 79 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-----
Confidence 4567778889999999999999999999999999999995 7778889999999999999988888887777765
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004984 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (721)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (721)
+.+++++|.++..+|++++|+..++++
T Consensus 80 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 80 -----------------------------------------------------SKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345778899999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHhcCCHH
Q 004984 631 RQHAASDHERLVYEGWILYDTSHCE 655 (721)
Q Consensus 631 l~l~P~~~ea~~~~G~~Ly~~G~~d 655 (721)
++++|++..++..+|.++..+|+++
T Consensus 107 ~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 107 LELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998863
No 161
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.48 E-value=1.4e-13 Score=131.63 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCCH--HHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALEDY--QAALCDVQA 537 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd~--eeAl~d~~k 537 (721)
++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..+|.+ +...|++ ++|+..|++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 66666677777777777777777777777666666666666666666663 4555555555 4455554 544444444
Q ss_pred HHhhCC
Q 004984 538 ILTLSP 543 (721)
Q Consensus 538 al~L~P 543 (721)
+++++|
T Consensus 107 al~~~p 112 (177)
T 2e2e_A 107 ALALDS 112 (177)
T ss_dssp HHHHCT
T ss_pred HHHhCC
Confidence 443333
No 162
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.48 E-value=3.8e-13 Score=128.63 Aligned_cols=126 Identities=13% Similarity=0.123 Sum_probs=92.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh
Q 004984 489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (721)
Q Consensus 489 l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~ 567 (721)
+...|++++|+..|+++++.+|+ +..+..+|.++..+|++++|+..|+++++++|++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--------------------- 78 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--------------------- 78 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------------
Confidence 45678899999999999999995 78888899999999999999999999999999872
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH-HHHcCCh--HHHHHHHHHHHHhCCCChhHHHHH
Q 004984 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL-LLRLNCP--EAAMRSLQLARQHAASDHERLVYE 644 (721)
Q Consensus 568 ~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~-L~~lg~~--eeAl~~~~~Al~l~P~~~ea~~~~ 644 (721)
.+++++|.+ +...|++ ++|+..++++++++|++..+++++
T Consensus 79 -------------------------------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 121 (177)
T 2e2e_A 79 -------------------------------------ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL 121 (177)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 234455555 4566666 667777777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 645 GWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 645 G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
|.+++.+|++++|+..|+++++++|+..
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 7777777777777777777777766654
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.48 E-value=1.6e-13 Score=130.13 Aligned_cols=110 Identities=9% Similarity=0.017 Sum_probs=97.4
Q ss_pred HHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984 574 WLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (721)
Q Consensus 574 ~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G 652 (721)
|..++..+...+++. |+..|+++++++|.++.+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++.+|
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 333333333334444 4889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984 653 HCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (721)
Q Consensus 653 ~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (721)
++++|+..|+++++++|++. +++.+|++.+-
T Consensus 94 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 94 DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 99999999999999999998 99999988653
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=1.1e-14 Score=164.00 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=119.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (721)
Q Consensus 477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~ 555 (721)
+.+.+|.++|.++..+|++++|+..|++||+++|+ ...+.++|.++..+|++++|+.+|++|++++|++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------- 73 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------- 73 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------
Confidence 34567788899999999999999999999999996 7888899999999999999999888888887776
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (721)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (721)
+.+|+++|.++..+|++++|+..|++|++++|
T Consensus 74 ------------------------------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 74 ------------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred ------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34678899999999999999999999999999
Q ss_pred CChhHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhcCCCHH
Q 004984 636 SDHERLVYEGWI--LYDTSHCEEGLRKAE-----------ESIQMKRSFE 672 (721)
Q Consensus 636 ~~~ea~~~~G~~--Ly~~G~~deAl~~ye-----------~Ai~i~~~~~ 672 (721)
++.+++.++|.+ +..+|++++|++.|+ ++++++|++.
T Consensus 106 ~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 106 HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 999999999999 999999999999999 8999888865
No 165
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=4.7e-13 Score=120.84 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..++.+|.++..+|++++|+.+|+++++
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 77788889999999999999999999999999999999999999999996 78889999999999999999999999999
Q ss_pred hC
Q 004984 541 LS 542 (721)
Q Consensus 541 L~ 542 (721)
++
T Consensus 101 ~~ 102 (126)
T 3upv_A 101 KD 102 (126)
T ss_dssp HH
T ss_pred hC
Confidence 99
No 166
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.46 E-value=2e-12 Score=134.73 Aligned_cols=167 Identities=9% Similarity=-0.015 Sum_probs=112.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH-----H-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984 485 RASSLMTKQNVEAALAEINRILGFKLA-LEC-----L-ELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (721)
Q Consensus 485 rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~-----~-~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~ 557 (721)
.+..+...|++++|+..+++++...+. ++. + ...|.++...|++++|+..|++|+++.+......+...+...
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 455566666666666666666665543 221 1 124555556666666666666666655443222223333444
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH-------hCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004984 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE-------SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (721)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~-------l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (721)
.+.+.....++++| +..++++|+ ..|..+.+++++|.++.++|++++|+..+++|
T Consensus 161 lg~~y~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 161 IANIYAENGYLKKG------------------IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHTTCHHHH------------------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHH------------------HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444444444 455555552 23444568999999999999999999999999
Q ss_pred HHhCCCC------hhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 004984 631 RQHAASD------HERLVYEGWILYDTS-HCEEGLRKAEESIQMKR 669 (721)
Q Consensus 631 l~l~P~~------~ea~~~~G~~Ly~~G-~~deAl~~ye~Ai~i~~ 669 (721)
+++.+.. +.+++++|.+++.+| ++++|+..|++|+.+-.
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9998766 889999999999999 57999999999998743
No 167
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.45 E-value=1.3e-13 Score=132.64 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC----
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV----------EAALAEINRILGFKLA-LECLELRFCFFLALE---- 526 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~----------~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg---- 526 (721)
++|+..|++|++++|+++.+|+++|.++.+++++ ++|+..|++||+++|+ .++++++|.+|..+|
T Consensus 19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P 98 (158)
T 1zu2_A 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTP 98 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCc
Confidence 9999999999999999999999999999999886 5999999999999997 889999999998875
Q ss_pred -------CHHHHHHHHHHHHhhCCCc
Q 004984 527 -------DYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 527 -------d~eeAl~d~~kal~L~P~~ 545 (721)
++++|+..|++|++++|++
T Consensus 99 ~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 99 DETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred chhhhhccHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999998
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.45 E-value=4.1e-13 Score=127.06 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGF------------------KLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l------------------~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal 539 (721)
+..+..+|..++..|++++|+..|++||.+ +|. ...+.++|.++..+|++++|+.+|++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467788888888888888888888888887 343 3445555566666666665555555555
Q ss_pred hhCCCc
Q 004984 540 TLSPDY 545 (721)
Q Consensus 540 ~L~P~~ 545 (721)
+++|++
T Consensus 91 ~~~p~~ 96 (162)
T 3rkv_A 91 KREETN 96 (162)
T ss_dssp HHSTTC
T ss_pred hcCCcc
Confidence 555443
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.44 E-value=4.1e-13 Score=127.07 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=104.2
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 004984 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (721)
Q Consensus 415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~ 494 (721)
..++...|..++..|++++|+..|+++|...+.... .... .++ ...+++|.++.+|.++|.++..+|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~----~~~~--~~~------~~~~~~~~~~~~~~nla~~~~~~~~ 78 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL----REKP--GEP------EWVELDRKNIPLYANMSQCYLNIGD 78 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----TSCT--TSH------HHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc----cCCC--CHH------HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 455677888888888888888888888876321100 0000 000 0134578889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 004984 495 VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (721)
Q Consensus 495 ~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~ 570 (721)
+++|+.++++||+++|+ +..++.+|.++..+|++++|+.+|+++++++|++.. .+...+..+....+...+
T Consensus 79 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~-----~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 79 LHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS-----VVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHHHHHHHH
Confidence 99999999999999996 888999999999999999999999999999999842 234444444444444433
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.44 E-value=5.5e-13 Score=121.40 Aligned_cols=79 Identities=10% Similarity=0.015 Sum_probs=65.7
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 594 ~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+++++++|+++.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|+++++++|++.
T Consensus 41 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 41 EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 3333444444678899999999999999999999999999999999999999999999999999999999999999874
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.44 E-value=1.1e-12 Score=119.08 Aligned_cols=121 Identities=15% Similarity=0.058 Sum_probs=95.3
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 004984 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (721)
Q Consensus 473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~ 551 (721)
..+|..+..|..+|.++...|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------ 76 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------ 76 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------
Confidence 467888888999999999999999999999999988886 7778888888888888888888777777777665
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004984 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (721)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (721)
+.+|+++|.++..+|++++|+..+++|+
T Consensus 77 ----------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 77 ----------------------------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3457788888888888888888888888
Q ss_pred HhCCC-----ChhHHHHHHHHHHhc
Q 004984 632 QHAAS-----DHERLVYEGWILYDT 651 (721)
Q Consensus 632 ~l~P~-----~~ea~~~~G~~Ly~~ 651 (721)
+++|+ +.++...++.+....
T Consensus 105 ~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 105 SLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHChhHHHHHHHHHHHHHHHHHHHH
Confidence 88888 666665555554443
No 172
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.43 E-value=6.4e-14 Score=155.27 Aligned_cols=256 Identities=11% Similarity=0.013 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHhh
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGWMYQERSL 457 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~------~~~~~~ay~~rg~ 457 (721)
..|.++|.++...|++++|++.|.++ +...++...+..+...|++++|+..+..+++. .+.++.+|...|+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~ 109 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 109 (449)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCC
Confidence 46667777777777777777777654 33446666777777777777777777666643 3334444444433
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 458 ~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
+ .++...|+ .|+. .+|.++|..+.+.|++++|+..|+++ ..+..++.++..+|++++|+..|++
T Consensus 110 l---~e~e~f~~-----~pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 110 L---AELEEFIN-----GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp H---HHHTTTTT-----CC-----------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred H---HHHHHHHc-----CCcH-HHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHH
Confidence 3 44333332 1322 35666666666666666666666554 2234445555666666666666665
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHH-------HhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHH
Q 004984 538 ILTLSPDYRMFEGRVAASQLHMLVR-------EHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFR 609 (721)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~-------~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~ 609 (721)
+. +|.- +..-..+....+..+ ......+...-...+|.+ .+.+. ++..++++|.++|.+...+..
T Consensus 174 A~--~~~~--Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek---~G~~eEai~lLe~aL~le~ah~~~fte 246 (449)
T 1b89_A 174 AN--STRT--WKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD---RGYFEELITMLEAALGLERAHMGMFTE 246 (449)
T ss_dssp HT--CHHH--HHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred cC--Cchh--HHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHH---CCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 51 2210 000000000000000 000111111111223322 23333 488999999999999999999
Q ss_pred HHHHHHH--cCChHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 610 QSLLLLR--LNCPEAAMRSLQLARQHAA-----SDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 610 ~g~~L~~--lg~~eeAl~~~~~Al~l~P-----~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
+|.++.+ .++..|+++.|...+++.| .++..+-.+..+++.-|+||.|+...-+..
T Consensus 247 l~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 247 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 9999887 7788899999999999999 999999999999999999999987655544
No 173
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.43 E-value=2.1e-12 Score=120.37 Aligned_cols=134 Identities=14% Similarity=0.112 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc
Q 004984 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (721)
Q Consensus 381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~ 458 (721)
.....++.+|..+...|++++|+..|++|++..+ ..++.++|.++...|++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~--------------------------- 63 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY--------------------------- 63 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH---------------------------
Confidence 3455666677777777777777777777766643 33444455555554444
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH--HHHHHHhcCCHHHHHHHH
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL--RFCFFLALEDYQAALCDV 535 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~--R~~~~~~lgd~eeAl~d~ 535 (721)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ...+.. ++..+...|++++|+..+
T Consensus 64 ---~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 64 ---GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56666778888889999999999999999999999999999999999996 555533 455688899999999999
Q ss_pred HHHHhhCCC
Q 004984 536 QAILTLSPD 544 (721)
Q Consensus 536 ~kal~L~P~ 544 (721)
+++.++-+.
T Consensus 141 ~~~~~~~~~ 149 (166)
T 1a17_A 141 EHKRSVVDS 149 (166)
T ss_dssp HHHHHHHHH
T ss_pred cchHHHhcc
Confidence 998776443
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.43 E-value=4.4e-14 Score=151.79 Aligned_cols=140 Identities=12% Similarity=0.056 Sum_probs=72.7
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHH
Q 004984 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE------------------CLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~------------------~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
.|+.+..|+++|.++...|++++|+..|++||++.|+.. ++.++|.++..+|++++|+.
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~--- 251 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG--- 251 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---
Confidence 344456778888888888888888888888888887532 33444444444444444444
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (721)
Q Consensus 537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (721)
.++++|+++|.++.+|+++|.++..
T Consensus 252 -------------------------------------------------------~~~~al~~~p~~~~a~~~lg~a~~~ 276 (338)
T 2if4_A 252 -------------------------------------------------------HCNIVLTEEEKNPKALFRRGKAKAE 276 (338)
T ss_dssp -------------------------------------------------------HHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred -------------------------------------------------------HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4555555555556778999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+|++++|+..|++|++++|++.+++.+++.+ ....++.+++...|.+++.+.|+..
T Consensus 277 ~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 277 LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp TTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 9999999999999999999999999999998 5556888899999999999998764
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.42 E-value=1.1e-12 Score=126.61 Aligned_cols=157 Identities=11% Similarity=-0.052 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF------KLA-LECLELRFCFFLALEDYQAALCD 534 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l------~P~-~~~~~~R~~~~~~lgd~eeAl~d 534 (721)
++|...++......+..+.++.++|.++...|++++|+..|++++++ .|. ...+.++|.++..+|++++|+..
T Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 9 ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67766444444433377899999999999999999999999999984 332 45567789999999999999999
Q ss_pred HHHHHhh---CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 004984 535 VQAILTL---SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (721)
Q Consensus 535 ~~kal~L---~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g 611 (721)
|++++++ .|++.. ..+.+++++|
T Consensus 89 ~~~al~~~~~~~~~~~------------------------------------------------------~~~~~~~~lg 114 (203)
T 3gw4_A 89 FLEERELLASLPEDPL------------------------------------------------------AASANAYEVA 114 (203)
T ss_dssp HHHHHHHHHHSCCCHH------------------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHH------------------------------------------------------HHHHHHHHHH
Confidence 9999998 332200 1134678899
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 612 LLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
.++..+|++++|++.+++|+++.+.. +.++.++|.++..+|++++|+..+++|+++-+...
T Consensus 115 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 115 TVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999876543 23458999999999999999999999999855443
No 176
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.41 E-value=6e-12 Score=110.49 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=95.2
Q ss_pred cCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 004984 474 LDPTL-SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (721)
Q Consensus 474 LdP~~-~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~ 551 (721)
++|.. +.+|+.+|.++...|++++|+..|++++..+|+ +..+..++.++...|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------ 76 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------ 76 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------
Confidence 46666 778888888888888888888888888888885 6777778888888888888888777777766664
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004984 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (721)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (721)
+.+++++|.++..+|++++|+..+++++
T Consensus 77 ----------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 77 ----------------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3345677888888888888888888888
Q ss_pred HhCCCChhHHHHHHHHHHhcC
Q 004984 632 QHAASDHERLVYEGWILYDTS 652 (721)
Q Consensus 632 ~l~P~~~ea~~~~G~~Ly~~G 652 (721)
+++|++..++.++|.++..+|
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 105 ELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHCTTCHHHHHHHHHHHHHHC
T ss_pred HhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888877655
No 177
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.41 E-value=4.1e-12 Score=135.08 Aligned_cols=242 Identities=10% Similarity=0.020 Sum_probs=185.9
Q ss_pred HhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHH
Q 004984 394 LLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT 472 (721)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAi 472 (721)
+-.|.|..++....+ +.. ++.....+..|.+..+|++... .. .+++..+......|.. .+|+..|++.+
T Consensus 24 fy~G~yq~~i~e~~~-~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~-~~a~~~l~~l~ 93 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEK-FSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD-TKNIEELENLL 93 (310)
T ss_dssp HTTTCHHHHTHHHHT-SSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT-TTCCHHHHHTT
T ss_pred HHhhHHHHHHHHHHh-cCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 456888888874332 222 3444667788999999998742 12 2234333333333332 33889999999
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----
Q 004984 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A-LECLELRFCFFLALEDYQAALCDVQAILTLSPD----- 544 (721)
Q Consensus 473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P--~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~----- 544 (721)
+..+....++..+|.++...|++++|+..+.++|+.+| + .++....+.++..+|+.+.|.+.+++..+.+|+
T Consensus 94 ~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 94 KDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 98877788889999999999999999999999999987 4 565566778999999999999999999999994
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCC--ChhHHHHHHHHHHHcCChH
Q 004984 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPE 621 (721)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~--~~~~~~~~g~~L~~lg~~e 621 (721)
+. ...+ .+++|+.+...- +++. |..+|+++.+..|. .+..+++ ++.++|+++
T Consensus 174 d~------~l~~-------------Laea~v~l~~g~---~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~ 228 (310)
T 3mv2_B 174 NE------MILN-------------LAESYIKFATNK---ETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIA 228 (310)
T ss_dssp HH------HHHH-------------HHHHHHHHHHTC---STTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHH
T ss_pred hH------HHHH-------------HHHHHHHHHhCC---ccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHH
Confidence 31 1122 255677766542 2333 68899999888886 4556655 899999999
Q ss_pred HHHHHHHHHHHh----------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 622 AAMRSLQLARQH----------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 622 eAl~~~~~Al~l----------~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+|.+.+++++++ +|++++++.|...+.+.+|+ +|-+.++|+..++|+-.
T Consensus 229 eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 229 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 999999988887 59999999999999999998 99999999999999875
No 178
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.41 E-value=5.8e-12 Score=131.15 Aligned_cols=162 Identities=10% Similarity=-0.074 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch--------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc------
Q 004984 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL------ 448 (721)
Q Consensus 383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~------ 448 (721)
...+...+..+...|+|++|+..|.++++..+. ..+.++|.++..+|++++|+..+.++++..+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345567788899999999999999999987321 235668889999999999999999999864432
Q ss_pred HHHHHHHhh----cCChhHHHHHHHHHH---hcCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 004984 449 GWMYQERSL----YCEGDKRWEDLDKAT---ALDPTLS----YPYMYRASSLMTKQNVEAALAEINRILGFKLA------ 511 (721)
Q Consensus 449 ~~ay~~rg~----~~~~~eAl~d~~kAi---eLdP~~~----~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~------ 511 (721)
+.+|.+.|. .+++++|+..|++|+ +..|+.. .+|+++|.+|..+|++++|+..|++|+++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 445555553 255599999999999 5567643 69999999999999999999999999998653
Q ss_pred -HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhCCC
Q 004984 512 -LECLELRFCFFLALEDYQAA-LCDVQAILTLSPD 544 (721)
Q Consensus 512 -~~~~~~R~~~~~~lgd~eeA-l~d~~kal~L~P~ 544 (721)
...+++.|.++..+|++++| ...|++|+.+...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999 7779999987543
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.41 E-value=6.3e-13 Score=121.03 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=79.4
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 004984 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (721)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd 527 (721)
|..+...|++ ++|+..|++|++++|+++.+|+++|.++..+|++++|+..|++|++++|+ +..+..+|.++..+|+
T Consensus 24 g~~~~~~g~~---~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANL---AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3444444444 77888889999999999999999999999999999999999999999996 7888899999999999
Q ss_pred HHHHHHHHHHHHhhCCCch
Q 004984 528 YQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 528 ~eeAl~d~~kal~L~P~~~ 546 (721)
+++|+..|+++++++|++.
T Consensus 101 ~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999873
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.41 E-value=4.4e-13 Score=131.11 Aligned_cols=164 Identities=8% Similarity=-0.110 Sum_probs=120.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (721)
Q Consensus 477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~ 555 (721)
..+....+-+.....+|++++|.+.++...+-.+. ...+..+|..+...|++++|+..|++++++.|++..+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--- 78 (198)
T 2fbn_A 2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI--- 78 (198)
T ss_dssp --------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH---
T ss_pred CCcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh---
Confidence 33445566777888899999999988887766664 66678899999999999999999999999999875322110
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (721)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (721)
+......+ ...+++++|.++..+|++++|+..+++|++++|
T Consensus 79 ----------------------------------~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 79 ----------------------------------LLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp ----------------------------------HHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ----------------------------------HHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 00011111 157899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 004984 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA 682 (721)
Q Consensus 636 ~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~ 682 (721)
+++.+++++|.+++.+|++++|+..|++|++++|+.. ++.+.+.++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887 7777776553
No 181
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.40 E-value=4.6e-13 Score=128.75 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=83.8
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-------
Q 004984 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCP----------EAAMRSLQLARQHAASDHERLVYEGWILYDTS------- 652 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~----------eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G------- 652 (721)
+..++++++++|+++++|++.|.+|..++++ ++|+..|++|++++|+++++++++|.+|+.+|
T Consensus 22 ~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~ 101 (158)
T 1zu2_A 22 RQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDET 101 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchh
Confidence 7899999999999999999999999999886 59999999999999999999999999999985
Q ss_pred ----CHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 004984 653 ----HCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (721)
Q Consensus 653 ----~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~ 682 (721)
++++|+..|++|++|+|+++.| .+++.++
T Consensus 102 ~a~g~~~eA~~~~~kAl~l~P~~~~y-~~al~~~ 134 (158)
T 1zu2_A 102 EAKHNFDLATQFFQQAVDEQPDNTHY-LKSLEMT 134 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHhCCCCHHH-HHHHHHH
Confidence 8999999999999999998855 3444433
No 182
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=5.4e-12 Score=115.18 Aligned_cols=120 Identities=18% Similarity=0.096 Sum_probs=85.8
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 471 AieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~ 546 (721)
++..+|+.+..++.+|..+...|++++|+..|+++++++|+ ...+.++|.++..+|++++|+..|+++++++|++
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 98 (148)
T 2dba_A 20 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD- 98 (148)
T ss_dssp CCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-
T ss_pred CCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-
Confidence 34567778888888888888888888888888888888886 3455666777777777777777666666665554
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 004984 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (721)
Q Consensus 547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~ 626 (721)
+.+++++|.++..+|++++|+..
T Consensus 99 ---------------------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~ 121 (148)
T 2dba_A 99 ---------------------------------------------------------VKALYRRSQALEKLGRLDQAVLD 121 (148)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 23456667777777777777777
Q ss_pred HHHHHHhCCCChhHHHHHHHHH
Q 004984 627 LQLARQHAASDHERLVYEGWIL 648 (721)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~L 648 (721)
++++++++|++.+++..++.+.
T Consensus 122 ~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 122 LQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHH
Confidence 7777777777777666666554
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.38 E-value=2.4e-13 Score=153.17 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=106.8
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 004984 446 TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524 (721)
Q Consensus 446 ~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~ 524 (721)
.+.|..|..+|++ ++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++|++++|+ +..++++|.++..
T Consensus 10 ~~lg~~~~~~g~~---~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 10 KTQANDYFKAKDY---ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSTTTTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445555556555 89999999999999999999999999999999999999999999999996 7888899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH--HHhhhhhhHHHHHHhhhhccccccccchHHHHH--------
Q 004984 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV--REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY-------- 594 (721)
Q Consensus 525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l--~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~-------- 594 (721)
+|++++|+..|+++++++|++..+ ...++.+ .....++++| +..++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~------~~~l~~~~~~~~~g~~~~A------------------~~~~~~~~~~~~~ 142 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDA------KMKYQECNKIVKQKAFERA------------------IAGDEHKRSVVDS 142 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTH------HHHHHHHHHHHHHHHHCCC------------------------CCSTTTC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHH------------------hccccccchhHhh
Confidence 999999999999999999998542 2222222 2223444444 44444
Q ss_pred ---HHHHhCCCChhHHHHHH
Q 004984 595 ---QMLESDAPKGVLYFRQS 611 (721)
Q Consensus 595 ---qaL~l~P~~~~~~~~~g 611 (721)
++++++|.....++..+
T Consensus 143 ~~~~al~~~~~~~~~~~~~~ 162 (477)
T 1wao_1 143 LDIESMTIEDEYSGPKLEDG 162 (477)
T ss_dssp CTTSSCCCCTTCCSCCCGGG
T ss_pred hhhhhccccccccccccccc
Confidence 77888888877776654
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.34 E-value=9.1e-13 Score=141.49 Aligned_cols=154 Identities=8% Similarity=-0.062 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCCh
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~ 461 (721)
....++++|..+...|+|++|+..|++||+..+.+.. +...|++.++...+.. ..+-+.|.+|..+|++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------~~~~~~~~~~~~~l~~--~~~~nla~~~~~~g~~--- 246 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM------FQLYGKYQDMALAVKN--PCHLNIAACLIKLKRY--- 246 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH------HTCCHHHHHHHHHHHT--HHHHHHHHHHHTTTCC---
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh------hhhcccHHHHHHHHHH--HHHHHHHHHHHHcCCH---
Confidence 4567889999999999999999999999999766542 2234445555444321 2334566777777666
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALEDYQAALCDVQAIL 539 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd~eeAl~d~~kal 539 (721)
++|+.+|++|++++|+++.+|+++|.+|..+|++++|+.+|++|++++|+ ...+..++.+ ....+..++|...|++++
T Consensus 247 ~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 247 DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999996 6666667665 566788899999999999
Q ss_pred hhCCCch
Q 004984 540 TLSPDYR 546 (721)
Q Consensus 540 ~L~P~~~ 546 (721)
.++|++.
T Consensus 327 ~~~p~~~ 333 (338)
T 2if4_A 327 KGKDEGG 333 (338)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 9999873
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.33 E-value=8.4e-12 Score=107.84 Aligned_cols=71 Identities=10% Similarity=0.093 Sum_probs=44.8
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~ 544 (721)
++|+++.+|..+|.++...|++++|+..|+++++++|+ ...+..+|.++..+|++++|+..|+++++++|+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 46677777777777777777777777777777766664 455555555555555555555555555555444
No 186
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.33 E-value=2.9e-11 Score=105.18 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~ 544 (721)
.+|..+|.++...|++++|+..|++++.++|+ +..+..+|.++..+|++++|+..++++++++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 34555555555555555555555555555553 444444455555555555544444444444333
No 187
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.32 E-value=1.7e-11 Score=111.11 Aligned_cols=86 Identities=21% Similarity=0.225 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
++++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..++.+|.++..+|++++|+..|+++
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3377777888999999999999999999999999999999999999999996 788899999999999999999999999
Q ss_pred HhhCCCc
Q 004984 539 LTLSPDY 545 (721)
Q Consensus 539 l~L~P~~ 545 (721)
++++|+.
T Consensus 104 ~~~~p~~ 110 (137)
T 3q49_B 104 YSLAKEQ 110 (137)
T ss_dssp HHHHHHT
T ss_pred HHHChhH
Confidence 9999984
No 188
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.32 E-value=1.3e-12 Score=144.84 Aligned_cols=237 Identities=13% Similarity=-0.053 Sum_probs=95.9
Q ss_pred HHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHH
Q 004984 391 CVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWE 466 (721)
Q Consensus 391 ~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~ 466 (721)
+.....|++++|.+.+++. ++..+|..+|.++..+|++.+|++.|.++- +...|+..+. .|+.++|+.
T Consensus 11 ~ll~~~~~ld~A~~fae~~---~~~~vWs~La~A~l~~g~~~eAIdsfika~-----D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC---CChHHHHHHHHHHHHcCCHHHHHHHHHcCC-----CHHHHHHHHHHHHhCCCHHHHHH
Confidence 3445678899999999986 667899999999999999999999997752 2234433322 344499999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~ 546 (721)
.|.++++..|+ +.....++.+|..+|++.++...++ .|+...+...|..+...|+|++|+..|.++ +++
T Consensus 83 yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----~n~- 151 (449)
T 1b89_A 83 YLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----SNF- 151 (449)
T ss_dssp ---------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT----TCH-
T ss_pred HHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----hhH-
Confidence 99999986555 7888899999999999999887775 477778888999999999999999999987 332
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 004984 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (721)
Q Consensus 547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~ 626 (721)
..++.+.-.+++++. |+..+.+| +++..|-..+.+...+|+++.|...
T Consensus 152 ---------~~LA~~L~~Lg~yq~------------------AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 152 ---------GRLASTLVHLGEYQA------------------AVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp ---------HHHHHHHHTTTCHHH------------------HHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred ---------HHHHHHHHHhccHHH------------------HHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHH
Confidence 111111222222333 47788888 5889999999999999999999887
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 004984 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA 682 (721)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~ 682 (721)
... +...|++ +.....++.+.|+++||+..+|+++.++|.-. +|.--|.+++
T Consensus 200 ~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 200 GLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 252 (449)
T ss_dssp TTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 774 4466555 44577788999999999999999999999887 8888776654
No 189
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-11 Score=109.46 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++
T Consensus 33 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 33 PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555555555555555553 44445555555555555555555555555
Q ss_pred hCCCc
Q 004984 541 LSPDY 545 (721)
Q Consensus 541 L~P~~ 545 (721)
++|++
T Consensus 113 ~~p~~ 117 (133)
T 2lni_A 113 LDSSC 117 (133)
T ss_dssp HCGGG
T ss_pred hCCCc
Confidence 55554
No 190
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.32 E-value=2e-11 Score=127.11 Aligned_cols=158 Identities=10% Similarity=-0.059 Sum_probs=126.5
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccc---h-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc------HHH
Q 004984 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH---I-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL------GWM 451 (721)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~-----~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~------~~a 451 (721)
+......+...|+|++|+..|+++++..+ . ..+.++|.++...|++++|+..+.+++...+.. +.+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 34456778889999999999999998632 1 123358888998999999999999999864321 235
Q ss_pred HHHHhhc----CChhHHHHHHHHHHh-------cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HH
Q 004984 452 YQERSLY----CEGDKRWEDLDKATA-------LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LE 513 (721)
Q Consensus 452 y~~rg~~----~~~~eAl~d~~kAie-------LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~ 513 (721)
|.+.|.+ +++++|+..|++|++ ..|..+.+|+++|.+|..+|++++|+..+++||++.+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 5555532 466999999999994 34455679999999999999999999999999998642 46
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 004984 514 CLELRFCFFLALE-DYQAALCDVQAILTLSP 543 (721)
Q Consensus 514 ~~~~R~~~~~~lg-d~eeAl~d~~kal~L~P 543 (721)
.++++|.++..+| ++++|+..|++|+++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 6788999999999 57999999999998753
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.31 E-value=1e-11 Score=135.28 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILG----------------FKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~----------------l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
+..|.++|.++...|++++|+..|++||+ ++|. ...+.++|.++..+|++++|+.+|++|+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 6664 566778888888888888888888877777
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 004984 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (721)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e 621 (721)
+|++ +.+|+++|.++..+|+++
T Consensus 303 ~p~~----------------------------------------------------------~~a~~~lg~~~~~~g~~~ 324 (370)
T 1ihg_A 303 DPSN----------------------------------------------------------TKALYRRAQGWQGLKEYD 324 (370)
T ss_dssp CTTC----------------------------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred Cchh----------------------------------------------------------HHHHHHHHHHHHHccCHH
Confidence 7765 456888999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004984 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (721)
Q Consensus 622 eAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ 660 (721)
+|+..|++|++++|++.+++..++.++..+|+++++...
T Consensus 325 eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 325 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887653
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.31 E-value=3.9e-12 Score=114.04 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=92.2
Q ss_pred hHHHHHHHHHh---CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 589 SLSVIYQMLES---DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 589 al~~~~qaL~l---~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
|+..++++|++ +|.++.+++++|.++..+|++++|+..+++|++++|+++++++++|.+++.+|++++|+..+++++
T Consensus 9 A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp CHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68999999999 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHH--HHHHHHHHhhccCCCC
Q 004984 666 QMKRSFE--AFFLKAYALADSSQDS 688 (721)
Q Consensus 666 ~i~~~~~--a~~~~~~~~~~~~~~~ 688 (721)
++.|+.. ..+.++.......+|.
T Consensus 89 ~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 89 AETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999876 5566777666666654
No 193
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.30 E-value=2.2e-11 Score=107.71 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDY 528 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~ 528 (721)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+...+.++..+|++
T Consensus 63 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 44444455555556666666666666666666666666666666666663 45555555565555543
No 194
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.30 E-value=3.7e-11 Score=107.71 Aligned_cols=119 Identities=11% Similarity=-0.009 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-L---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~---~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~ 555 (721)
.+++++|.++...|++++|+..|+++++.+|+ + ..++.+|.++..+|++++|+..|+++++++|++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~--------- 73 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD--------- 73 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---------
Confidence 34566677777777777777777777776664 3 4556666666677777776666666666666641
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (721)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (721)
..+.+++++|.++..+|++++|+..++++++..|
T Consensus 74 ----------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 74 ----------------------------------------------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp ----------------------------------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ----------------------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 0123456666666667777777777777777777
Q ss_pred CChhHHHHHHHHHHhcCC
Q 004984 636 SDHERLVYEGWILYDTSH 653 (721)
Q Consensus 636 ~~~ea~~~~G~~Ly~~G~ 653 (721)
++..+...+..+-.-.++
T Consensus 108 ~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 108 GSDAARVAQERLQSIRLG 125 (129)
T ss_dssp TSHHHHHHHHHHHHHC--
T ss_pred CChHHHHHHHHHHHHHhh
Confidence 666666555555444433
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.30 E-value=5.2e-12 Score=115.62 Aligned_cols=140 Identities=11% Similarity=0.020 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-------~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~ 551 (721)
+.++.++|.++...|++++|+..+++++++.+.. ..+...|.++..+|++++|+..|++++++.|+...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 5688999999999999999999999999986531 25667889999999999999999999988665310
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004984 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (721)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (721)
.+..+.+++++|.++..+|++++|+..+++|+
T Consensus 85 ------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 85 ------------------------------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------------------------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 00113567889999999999999999999999
Q ss_pred HhCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 632 QHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 632 ~l~P~------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
++.+. .+.++.++|.+++.+|++++|+..+++|+++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 117 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 98543 3678999999999999999999999999988654
No 196
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.29 E-value=2.6e-11 Score=105.50 Aligned_cols=92 Identities=14% Similarity=-0.020 Sum_probs=87.1
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
|+..+++++..+|.++.+++++|.++..+|++++|+..++++++++|+++.+++++|.+++.+|++++|+..|+++++++
T Consensus 23 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 23 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHH-HHHHHHHH
Q 004984 669 RSFE-AFFLKAYA 680 (721)
Q Consensus 669 ~~~~-a~~~~~~~ 680 (721)
|+.. +++..|.+
T Consensus 103 ~~~~~~~~~l~~~ 115 (118)
T 1elw_A 103 ANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 9887 76666544
No 197
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.29 E-value=4.1e-11 Score=107.47 Aligned_cols=107 Identities=11% Similarity=-0.058 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 004984 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (721)
Q Consensus 515 ~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~ 594 (721)
++.+|..+...|++++|+..|+++++.+|++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------------------------------------------------ 36 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGV------------------------------------------------ 36 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST------------------------------------------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc------------------------------------------------
Confidence 56778888889999999998888888888762
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~ 671 (721)
..+.+++++|.++..+|++++|+..|+++++.+|++ +++++++|.+++.+|++++|+..|++++++.|+.
T Consensus 37 -------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 37 -------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp -------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred -------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 112578889999999999999999999999999999 8999999999999999999999999999999987
Q ss_pred H-HHHH
Q 004984 672 E-AFFL 676 (721)
Q Consensus 672 ~-a~~~ 676 (721)
. +...
T Consensus 110 ~~~~~a 115 (129)
T 2xev_A 110 DAARVA 115 (129)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 7 4433
No 198
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.28 E-value=8.9e-11 Score=102.90 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (721)
Q Consensus 512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~ 591 (721)
...++..|.++...|++++|+..|+++++.+|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------------------- 42 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------------------------------------- 42 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----------------------------------------------
Confidence 4556667777777888777777777776666554
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~ 671 (721)
+.+++++|.++...|++++|+..++++++.+|+++.+++++|.+++.+|++++|+..|++++.+.|+.
T Consensus 43 ------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 43 ------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45677889999999999999999999999999999999999999999999999999999999999988
Q ss_pred H-HHHHHHHHhh
Q 004984 672 E-AFFLKAYALA 682 (721)
Q Consensus 672 ~-a~~~~~~~~~ 682 (721)
. +++..|.++.
T Consensus 111 ~~~~~~l~~~~~ 122 (125)
T 1na0_A 111 AEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 7 8888887654
No 199
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.28 E-value=5e-12 Score=113.31 Aligned_cols=88 Identities=15% Similarity=0.011 Sum_probs=81.9
Q ss_pred CChhHHHHHHHHHHhc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004984 459 CEGDKRWEDLDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (721)
Q Consensus 459 ~~~~eAl~d~~kAieL---dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d 534 (721)
++.++|+..|++|+++ +|+++.+|.++|.++..+|++++|+..|+++++++|+ +..++++|.++..+|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4449999999999999 7999999999999999999999999999999999996 78888999999999999999999
Q ss_pred HHHHHhhCCCch
Q 004984 535 VQAILTLSPDYR 546 (721)
Q Consensus 535 ~~kal~L~P~~~ 546 (721)
|+++++++|++.
T Consensus 84 ~~~al~~~p~~~ 95 (117)
T 3k9i_A 84 LLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHCCCH
T ss_pred HHHHHHhCCCcH
Confidence 999999999984
No 200
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.27 E-value=2.7e-11 Score=104.59 Aligned_cols=72 Identities=10% Similarity=0.012 Sum_probs=64.0
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCH
Q 004984 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 600 ~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~Ly~~-G~~deAl~~ye~Ai~i~~~~ 671 (721)
+|.++.+++++|.++..+|++++|+..++++++++|+ +.++++++|.++..+ |++++|++.+++++...|+.
T Consensus 36 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 36 DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 3334456788999999999999999999999999999 999999999999999 99999999999999998874
No 201
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.5e-11 Score=110.66 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=103.6
Q ss_pred cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccc
Q 004984 508 FKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD 586 (721)
Q Consensus 508 l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd 586 (721)
.+|. ...+..+|..+...|++++|+..|+++++++|++..
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------------------- 63 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD--------------------------------------- 63 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---------------------------------------
Confidence 3453 677888999999999999999999999999998510
Q ss_pred cchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 587 ~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
.+.+++++|.++..+|++++|+..++++++++|+++.+++++|.+++.+|++++|+..|+++++
T Consensus 64 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 64 ----------------QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp ----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1356888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHH-HHHHHHHH
Q 004984 667 MKRSFE-AFFLKAYA 680 (721)
Q Consensus 667 i~~~~~-a~~~~~~~ 680 (721)
++|+.. ++...+-+
T Consensus 128 ~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 128 LEPKNKVFQEALRNI 142 (148)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHH
Confidence 999876 66555544
No 202
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.27 E-value=2e-11 Score=133.08 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCCh
Q 004984 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (721)
Q Consensus 382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~ 461 (721)
....+..+|..+...|+|++|+..|++||++.+...
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-------------------------------------------- 257 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------------------------------------- 257 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------------------------------------------
Confidence 456677888888888888888888888877532210
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
+..+.+++.+++|.++.+|.++|.++..+|++++|+..+++||+++|+ +..++.+|.++..+|++++|+.+|++|++
T Consensus 258 --~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 258 --AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp --HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 011245677788889999999999999999999999999999999996 78888899999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (721)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (721)
++|++. .+...+..+.....+.+++
T Consensus 336 l~P~~~------~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 336 IAPEDK------AIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HCTTCH------HHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCH------HHHHHHHHHHHHHHHHHHH
Confidence 999983 3455555555555555555
No 203
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.26 E-value=2.6e-11 Score=116.96 Aligned_cols=151 Identities=11% Similarity=-0.078 Sum_probs=95.4
Q ss_pred hccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHHHHhh----cCChh
Q 004984 395 LRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVIS------SVTPLGWMYQERSL----YCEGD 462 (721)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~------~~~~~~~ay~~rg~----~~~~~ 462 (721)
..|+|++|++.++..... ....++..+|.++..+|++++|+..+.++++ ..+..+.++.+.|. .++.+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 345555555533322221 1233445555555555555555555555555 22223333333332 13346
Q ss_pred HHHHHHHHHHhc---CC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CH----HHHHHHHHHHHhcCCH
Q 004984 463 KRWEDLDKATAL---DP----TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---AL----ECLELRFCFFLALEDY 528 (721)
Q Consensus 463 eAl~d~~kAieL---dP----~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P---~~----~~~~~R~~~~~~lgd~ 528 (721)
+|+..|++|+++ .| ..+.++.++|.++..+|++++|+..+++++++.+ ++ ..+.++|.++..+|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666666666 23 3457899999999999999999999999998632 22 2346788999999999
Q ss_pred HHHHHHHHHHHhhCCCc
Q 004984 529 QAALCDVQAILTLSPDY 545 (721)
Q Consensus 529 eeAl~d~~kal~L~P~~ 545 (721)
++|+..+++++++....
T Consensus 164 ~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999986554
No 204
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.25 E-value=4e-11 Score=106.32 Aligned_cols=125 Identities=8% Similarity=-0.009 Sum_probs=104.8
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (721)
Q Consensus 476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a 554 (721)
|+.+..|+.+|.++...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++....
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----- 75 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY----- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH-----
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH-----
Confidence 345678999999999999999999999999999996 78888899999999999999999999999988651100
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004984 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (721)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 634 (721)
+..+.+++++|.++..+|++++|+..+++++++.
T Consensus 76 ----------------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 76 ----------------------------------------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 0113567889999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcC
Q 004984 635 ASDHERLVYEGWILYDTS 652 (721)
Q Consensus 635 P~~~ea~~~~G~~Ly~~G 652 (721)
| +.+....++.+.-.++
T Consensus 110 ~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 110 R-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp C-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 9 5888888887765544
No 205
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.24 E-value=5.9e-11 Score=128.74 Aligned_cols=218 Identities=13% Similarity=0.021 Sum_probs=159.9
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 004984 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (721)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eA 498 (721)
...|+.+...|++.+|++.|.++++..++.+.++..++.. .......++| +.++|.+|..+|++++|
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~a----------l~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVD---DKRRNEQETS----------ILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBC---SHHHHHHHHH----------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHH---HHHhhhHHHH----------HHHHHHHHHHCCCHHHH
Confidence 4456667777888888888888888777666655555443 4445555544 47888999999999999
Q ss_pred HHHHHHHHhcCCC-HHH------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984 499 LAEINRILGFKLA-LEC------LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (721)
Q Consensus 499 l~~~~kAL~l~P~-~~~------~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (721)
+..|.+++.+.+. ... ..+.+.++...|++++|+..+++++...+....-.++..+...++.+.....++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 9999988887553 111 233566777888899999999888887665433334455566666666666666666
Q ss_pred HHHHhhhhccccccccchHHHHHHHHHh------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------h
Q 004984 572 DCWLQLYDRWSSVDDIGSLSVIYQMLES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------H 638 (721)
Q Consensus 572 ~~~~~l~~~~~~~dd~~al~~~~qaL~l------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ 638 (721)
+..+.+++.. .|..++++.++|.++..+|++++|...|++|+...|.. +
T Consensus 155 ------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 155 ------------------LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp ------------------HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred ------------------HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 5556666655 45667899999999999999999999999999886543 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 639 ERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i 667 (721)
..+.+.|.++...|+|++|...|.++++.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677788888899999999999999874
No 206
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.21 E-value=2.9e-11 Score=106.99 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=65.5
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHhhhhc-----c---CCCC--CC
Q 004984 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSV-----T---GSLN--GV 250 (721)
Q Consensus 184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~is~~~~~~lL~f~Y-----t---g~l~--~i 250 (721)
|+|+- +|++|.+||.| |++|+||++||.+ ++.|+....|.|+ +|++.+|+.+++|+| + +.++ ++
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~--~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECT--TSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECC--CCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 56665 78999999999 9999999999987 7888888999999 599999999999999 5 5554 37
Q ss_pred CHHHHHHHHHHhhhcCh
Q 004984 251 TPNLLLEILIFANKFCC 267 (721)
Q Consensus 251 ~~~~v~~LL~aAd~~~v 267 (721)
+++++++|+.||++|++
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 78999999999999975
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.19 E-value=9.5e-11 Score=104.10 Aligned_cols=84 Identities=13% Similarity=0.011 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+ +..++++|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999996 78889999999999999999999999999
Q ss_pred hCCCc
Q 004984 541 LSPDY 545 (721)
Q Consensus 541 L~P~~ 545 (721)
++|+.
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 99975
No 208
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.19 E-value=1.2e-10 Score=103.20 Aligned_cols=107 Identities=10% Similarity=0.010 Sum_probs=92.2
Q ss_pred HHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------hhHHHHHH
Q 004984 574 WLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------HERLVYEG 645 (721)
Q Consensus 574 ~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ea~~~~G 645 (721)
|..++......+++. |+..+.+++..+|.++.+++++|.++..+|++++|+..+++++++.|++ +.+++++|
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333433333344444 5889999999999999999999999999999999999999999999988 99999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004984 646 WILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (721)
Q Consensus 646 ~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~ 680 (721)
.+++.+|++++|+..|++++++.|+.......+.+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999987766655544
No 209
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.17 E-value=2.7e-10 Score=104.03 Aligned_cols=140 Identities=15% Similarity=0.019 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--h------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Q 004984 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--I------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMY 452 (721)
Q Consensus 381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay 452 (721)
....++..+|.++...|++++|+..|++|+++.+ . .++..+|.++..+|++++|+..+.++++..+..+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-- 84 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-- 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--
Confidence 3467788999999999999999999999998722 1 36777888888888888888888777765432110
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHhc
Q 004984 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---A----LECLELRFCFFLAL 525 (721)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P---~----~~~~~~R~~~~~~l 525 (721)
.+..+.++.++|.++..+|++++|+..+++++++.+ + ...+..++.++..+
T Consensus 85 ----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 85 ----------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 011256788999999999999999999999998732 1 23456788999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 004984 526 EDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 526 gd~eeAl~d~~kal~L~P~ 544 (721)
|++++|+..+++++++...
T Consensus 143 g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TCHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.14 E-value=1.6e-10 Score=102.70 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~ 668 (721)
++..++++++.+|.++.+++++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCHH
Q 004984 669 RSFE 672 (721)
Q Consensus 669 ~~~~ 672 (721)
|+..
T Consensus 84 ~~~~ 87 (115)
T 2kat_A 84 QSRG 87 (115)
T ss_dssp HHHT
T ss_pred cccc
Confidence 8653
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.12 E-value=1.7e-09 Score=117.12 Aligned_cols=157 Identities=11% Similarity=0.059 Sum_probs=107.5
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984 515 LELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (721)
Q Consensus 515 ~~~R~~~~~~lgd---~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~ 591 (721)
++.||.-+...++ +.+|+..|++|++++|+|..++...+..+.. ......+.... ...+.. ++.
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~---~~~~~~~~~~~-~~~l~~---------a~~ 265 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV---RHSQHPLDEKQ-LAALNT---------EID 265 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HHHHSCCCHHH-HHHHHH---------HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HhccCCCchhh-HHHHHH---------HHH
Confidence 3556665554433 4778888888888888885433222211110 00000000000 000000 011
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~ 671 (721)
--.++..+|.++.+|.-.|..+...|++++|++.+++|++++|+ +.++..+|+++...|++++|++.|++|+.++|+.
T Consensus 266 -a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 266 -NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp -HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred -HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 11345788999999999999999999999999999999999975 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCC
Q 004984 672 EAFFLKAYALADSSQ 686 (721)
Q Consensus 672 ~a~~~~~~~~~~~~~ 686 (721)
+.|++-.-..=.|+|
T Consensus 344 ~t~~~~~~l~F~sn~ 358 (372)
T 3ly7_A 344 NTLYWIENGIFQTSV 358 (372)
T ss_dssp HHHHHHHHSSSCCCH
T ss_pred ChHHHHhCceeecch
Confidence 987775554445554
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.06 E-value=2.9e-10 Score=99.47 Aligned_cols=73 Identities=8% Similarity=0.058 Sum_probs=68.0
Q ss_pred hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (721)
Q Consensus 599 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~ 671 (721)
.+|+++.+|+++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|+++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999997654
No 213
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=8.1e-10 Score=119.75 Aligned_cols=172 Identities=8% Similarity=-0.060 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLAL------------------ECLELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~------------------~~~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
.+....|..+...|+|++|+..|.+++...|+. .++..+|.+|..+|++++|+..|++++++
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344556666777777777777777777766641 13567889999999999999999999998
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC------CCChhHHHHHHHHHH
Q 004984 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD------APKGVLYFRQSLLLL 615 (721)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~------P~~~~~~~~~g~~L~ 615 (721)
.+..........+....+.+......+++| +..+.+++... +..+.++.++|.++.
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQ------------------IFVCEKSIEFAKREKRVFLKHSLSIKLATLHY 146 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHH------------------HHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHH------------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 887644433344555555555455555555 55666666653 344678999999999
Q ss_pred HcCChHHHHHHHHHHHHh------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984 616 RLNCPEAAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (721)
Q Consensus 616 ~lg~~eeAl~~~~~Al~l------~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~ 669 (721)
.+|++++|+..+++++.. .|..++++.++|.++..+|++++|...|++|+.+.+
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 999999999999999987 555678999999999999999999999999998753
No 214
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.05 E-value=4.9e-10 Score=105.88 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=85.9
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCC----------------
Q 004984 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS---------------- 246 (721)
Q Consensus 184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~---------------- 246 (721)
|+|+. +|+.|.+||.+ |..|++|++||.+.- ...|.|+ +|+..+|+.+++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLP--NVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECT--TCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecC--CcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 67777 88999999998 899999999998631 4579999 599999999999999876
Q ss_pred ----------CCCCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHH
Q 004984 247 ----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELM 292 (721)
Q Consensus 247 ----------l~~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~ 292 (721)
+. ++.+++.+|+.||+++++..|.+.|+++++..+.. .+.-++.
T Consensus 77 ~~i~~wD~~F~~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikg-kt~eeiR 130 (141)
T 1fs1_B 77 DDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG-KTPEEIR 130 (141)
T ss_dssp ----HHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-CCHHHHH
T ss_pred hhhhHHHHHHHh-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHHH
Confidence 65 88999999999999999999999999999999863 3343333
No 215
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=8.1e-10 Score=95.97 Aligned_cols=83 Identities=6% Similarity=-0.007 Sum_probs=75.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------H-HHH
Q 004984 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF------E-AFF 675 (721)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~------~-a~~ 675 (721)
++..++++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|++++|+. . +++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999996 4 888
Q ss_pred HHHHHhhccC
Q 004984 676 LKAYALADSS 685 (721)
Q Consensus 676 ~~~~~~~~~~ 685 (721)
.+|.++...+
T Consensus 83 ~~~~~~~~~~ 92 (111)
T 2l6j_A 83 RLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888765443
No 216
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.4e-10 Score=100.86 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEE 663 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~Ly~~G~~deAl~~ye~ 663 (721)
.+|+++|.++..+|++++|+..+++|++++|++ +.+++.+|.++..+|++++|+..+++
T Consensus 39 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 39 VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 445566666666666666666666666666666 66666667666666666666555443
No 217
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.02 E-value=1e-09 Score=92.02 Aligned_cols=82 Identities=11% Similarity=0.076 Sum_probs=77.2
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 004984 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAY 679 (721)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~ 679 (721)
|.++.+++++|.++..+|++++|+..+++|++++|+++.+++++|.+++.+|++++|+..|+++++++|+.. ++++.|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999999999999999877 9998888
Q ss_pred Hhh
Q 004984 680 ALA 682 (721)
Q Consensus 680 ~~~ 682 (721)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 218
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.99 E-value=7.7e-10 Score=96.71 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=66.3
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
.+|+++.+|+++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|+.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 48999999999999999999999999999999999996 7888999999999999999999999999998875
No 219
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=4.6e-09 Score=111.65 Aligned_cols=203 Identities=12% Similarity=-0.095 Sum_probs=108.1
Q ss_pred HHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC--CcHHHHHHHhh----cCChhHHHHHHHHHHh
Q 004984 402 AEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT--PLGWMYQERSL----YCEGDKRWEDLDKATA 473 (721)
Q Consensus 402 A~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~--~~~~ay~~rg~----~~~~~eAl~d~~kAie 473 (721)
|+..|++.++.+ ...++..+|.++...|++++|++++.+.|...| +...++..... .++.+.|.+.+++..+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666666542 233445666677766666666666555544443 22222211111 1222444444444444
Q ss_pred cCCC----ChHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984 474 LDPT----LSYPYMYRASS--LMTKQ--NVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLS 542 (721)
Q Consensus 474 LdP~----~~~ay~~rg~~--l~~lg--~~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~ 542 (721)
.+|+ .-....+++.+ .+..| ++++|+..|+++..-.|+ +..+.+ ++..+|++++|.+++++++++.
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 4442 11122222222 33223 555555555555554444 122222 5555555555555555555554
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHH
Q 004984 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA 622 (721)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee 622 (721)
|+.. +.-..+|+++++..|+..+-..+|+ +
T Consensus 242 p~~~------------------------------------------------~k~~~~p~~~~~LaN~i~l~~~lgk--~ 271 (310)
T 3mv2_B 242 YSVE------------------------------------------------QKENAVLYKPTFLANQITLALMQGL--D 271 (310)
T ss_dssp HHTT------------------------------------------------TCHHHHSSHHHHHHHHHHHHHHTTC--T
T ss_pred cccc------------------------------------------------ccccCCCCCHHHHHHHHHHHHHhCh--H
Confidence 4320 0011258889999999888888997 7
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (721)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y 661 (721)
|.+.++++..++|+++....+.. ....||++..+|
T Consensus 272 a~~l~~qL~~~~P~hp~i~d~~~----k~~~Fd~~~~ky 306 (310)
T 3mv2_B 272 TEDLTNQLVKLDHEHAFIKHHQE----IDAKFDELVRKY 306 (310)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHH----HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCChHHHHHHH----HHHHHHHHHHHh
Confidence 99999999999999998765532 233455555444
No 220
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.95 E-value=2.7e-10 Score=109.99 Aligned_cols=107 Identities=16% Similarity=0.271 Sum_probs=60.3
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCC----------------
Q 004984 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS---------------- 246 (721)
Q Consensus 184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~---------------- 246 (721)
|+|+. +|+.|.+||.+ |..|++|++||.++. ....|.|+ +|+..+|+.|++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLP--NVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCT--TSCHHHHHHHHHC---------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCC--cCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 66765 79999999998 899999999998763 23478888 599999999999999986
Q ss_pred -----------CCCCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC--CHhhHHHHHHHhcc
Q 004984 247 -----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAVELMGYAIE 297 (721)
Q Consensus 247 -----------l~~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~--~~~n~~~l~~~A~~ 297 (721)
+. ++.+++.+|+.||++|++..|.+.|+++++.++. +++....++.....
T Consensus 80 ~~~i~~wD~~Fl~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd 142 (160)
T 2p1m_A 80 DDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKND 142 (160)
T ss_dssp ----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCC
T ss_pred cchhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCC
Confidence 34 7788999999999999999999999999999985 46666555544433
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.87 E-value=1.6e-09 Score=93.10 Aligned_cols=87 Identities=7% Similarity=-0.050 Sum_probs=73.1
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSY-PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (721)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~-ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (721)
|..+...|++ ++|+..|+++++++|+++. +|+++|.++..+|++++|+..|+++++++|+ +..+.+ +
T Consensus 7 a~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 7 IKELINQGDI---ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHTCH---HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 4556666555 8888889999999999999 9999999999999999999999999999997 444322 6
Q ss_pred CHHHHHHHHHHHHhhCCCch
Q 004984 527 DYQAALCDVQAILTLSPDYR 546 (721)
Q Consensus 527 d~eeAl~d~~kal~L~P~~~ 546 (721)
.+.+|+..|++++.++|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 68899999999999998863
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.86 E-value=5.5e-08 Score=101.72 Aligned_cols=82 Identities=5% Similarity=-0.001 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhCCC--ChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhc-CCHHHHHH
Q 004984 589 SLSVIYQMLESDAP--KGVLYFRQSLLLLRL-----NCPEAAMRSLQLARQHAASD-HERLVYEGWILYDT-SHCEEGLR 659 (721)
Q Consensus 589 al~~~~qaL~l~P~--~~~~~~~~g~~L~~l-----g~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~Ly~~-G~~deAl~ 659 (721)
+.+.++|||++||+ ++.+|..+|.++.++ |+++.|.+.|++|++++|+. .+.++..|..|... |++++|.+
T Consensus 182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~ 261 (301)
T 3u64_A 182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDE 261 (301)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence 35589999999999 788999999999997 99999999999999999975 99999999999885 99999999
Q ss_pred HHHHHHhcCCC
Q 004984 660 KAEESIQMKRS 670 (721)
Q Consensus 660 ~ye~Ai~i~~~ 670 (721)
.+++|+++.|.
T Consensus 262 ~L~kAL~a~p~ 272 (301)
T 3u64_A 262 ALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCGG
T ss_pred HHHHHHcCCCC
Confidence 99999999877
No 223
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.85 E-value=2.5e-08 Score=83.32 Aligned_cols=48 Identities=10% Similarity=0.000 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (721)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G 652 (721)
.+++++|.++..+|++++|+..++++++++|+++.++.++|.++..+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 345667777777777777777777777777777777777777776654
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.85 E-value=4e-08 Score=106.40 Aligned_cols=144 Identities=16% Similarity=0.087 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhc---cchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q 004984 383 LLAFHQLGCVRLLR---KEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (721)
Q Consensus 383 ~la~~~lG~~~~~~---g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~ 457 (721)
+..++.+|..+..+ ..+.+|+.+|++||+++|.+ ++..++.++... . ...+..+......
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------~------~~~~~~~~~~~~l-- 260 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------H------SQHPLDEKQLAAL-- 260 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------H------HHSCCCHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------h------ccCCCchhhHHHH--
Confidence 44556777776654 45789999999999997665 555566655511 0 0001111111111
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (721)
Q Consensus 458 ~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~k 537 (721)
..|+.. ..++.++|..+.+|.-+|.++...|++++|+..++||++++|+...+..+|.++...|++++|+..|++
T Consensus 261 ----~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 261 ----NTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp ----HHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 233332 246789999999999999999999999999999999999999987788899999999999999999999
Q ss_pred HHhhCCCch
Q 004984 538 ILTLSPDYR 546 (721)
Q Consensus 538 al~L~P~~~ 546 (721)
|+.++|...
T Consensus 336 AlrL~P~~~ 344 (372)
T 3ly7_A 336 AFNLRPGAN 344 (372)
T ss_dssp HHHHSCSHH
T ss_pred HHhcCCCcC
Confidence 999999973
No 225
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.79 E-value=1.3e-08 Score=87.28 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 004984 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF 675 (721)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-a~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~ 675 (721)
.+++|.++...|++++|+..++++++++|+++. +++++|.+++.+|++++|+..|+++++++|++. +++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 467888889999999999999999999999998 999999999999999999999999999999887 553
No 226
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.76 E-value=4.8e-07 Score=106.09 Aligned_cols=225 Identities=8% Similarity=-0.066 Sum_probs=157.0
Q ss_pred HHHHHHHHhcCCCcHHHHHHHhhc----CChhHHH-HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 004984 435 YEKLNSVISSVTPLGWMYQERSLY----CEGDKRW-EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF- 508 (721)
Q Consensus 435 ~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl-~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l- 508 (721)
...|++++...|..+..|+.-+.+ +..++|. ..|++|+...|.....|...+......|++++|-..|++++..
T Consensus 329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345666666666666666555432 3346786 8899999999999888899999999999999999999999874
Q ss_pred ----------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 004984 509 ----------KLA------------LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (721)
Q Consensus 509 ----------~P~------------~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (721)
.|. ...|...+.+..+.|+.+.|...|.+|++..|... ..+......++...
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~- 482 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHI- 482 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTT-
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHh-
Confidence 242 12233344556677889999999999998722210 00111111111111
Q ss_pred hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHH
Q 004984 567 NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLV 642 (721)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~ 642 (721)
.++.+ |..+|+++|+..|.++.+|...+..+...|+.+.|...|++|+...|+ ....+.
T Consensus 483 -----------------~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~ 545 (679)
T 4e6h_A 483 -----------------SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQ 545 (679)
T ss_dssp -----------------TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 12222 577999999999999999999999999999999999999999999984 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHhh
Q 004984 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFE--AFFLKAYALA 682 (721)
Q Consensus 643 ~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~--a~~~~~~~~~ 682 (721)
.....-...|+.+.+.+.++|+....|+.. ..|..=|.+.
T Consensus 546 ~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 546 KVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVL 587 (679)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCBT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC
Confidence 333334466999999999999999988854 4454444443
No 227
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.73 E-value=6.6e-07 Score=104.97 Aligned_cols=228 Identities=9% Similarity=-0.030 Sum_probs=169.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL-AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (721)
Q Consensus 464 Al~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl-~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L 541 (721)
....|++|+...|.++..|+.-|..+...|+.++|+ ..|.+|+...|. ...+...+.+....|++++|...|++++..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999998 999999999996 455556778899999999999999999985
Q ss_pred C-----------CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHh-CCCChhHHH
Q 004984 542 S-----------PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLES-DAPKGVLYF 608 (721)
Q Consensus 542 ~-----------P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l-~P~~~~~~~ 608 (721)
- |.+.. .+... ..+.+..|+.......+.++.+ |..++.+|+.. .+.....|.
T Consensus 408 l~~~~~~~~~~~p~~~~------------~~~~~--~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNES------------AINQL--KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHSTTCHH------------HHHHH--HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHhhhhhhccCcchh------------hhhhh--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 2 43200 00000 0011122333333222223333 57799999998 556678888
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHhhcc
Q 004984 609 RQSLLLLRLNC-PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS---FEAFFLKAYALADS 684 (721)
Q Consensus 609 ~~g~~L~~lg~-~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~---~~a~~~~~~~~~~~ 684 (721)
..|.+..+.|. ++.|...|+++++..|+++..+...+..+...|+.+.|-+.|++|+...|+ ....+.+-+.+.-.
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 88877777765 899999999999999999998878888888899999999999999999884 44666666666666
Q ss_pred CCCCCchhhHHHHHHHhhcCCCC
Q 004984 685 SQDSSCSSTVVSLLEDALKCPSD 707 (721)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~ 707 (721)
-=|.+....|.+-+-+ .||.+
T Consensus 554 ~G~~~~~~~v~~R~~~--~~P~~ 574 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFE--KFPEV 574 (679)
T ss_dssp TCCSHHHHHHHHHHHH--HSTTC
T ss_pred cCCHHHHHHHHHHHHH--hCCCC
Confidence 6566554444444433 46765
No 228
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.67 E-value=2.8e-07 Score=85.63 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=87.3
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCC
Q 004984 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP 476 (721)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP 476 (721)
+++++|+.+|++|.+.++..+. +|.+|...+...+|+ ..|++|.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~------------------------------~~~~~Aa~~-- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLF------------------------------QYLSKACEL-- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHH------------------------------HHHHHHHHT--
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHH------------------------------HHHHHHHcC--
Confidence 5788999999999999888877 887777666555544 445555554
Q ss_pred CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC
Q 004984 477 TLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPD 544 (721)
Q Consensus 477 ~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~eeAl~d~~kal~L~P~ 544 (721)
.++.+++++|.+|.. .+++++|+..|++|.+. -++.+.+++|.+|.. .+|+++|+..|++|.+....
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 567888888888888 78888888888888865 347777888888888 88888888888888887543
No 229
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=1.4e-08 Score=90.90 Aligned_cols=85 Identities=16% Similarity=0.127 Sum_probs=73.1
Q ss_pred hhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHHHHHhccccccchhhhcccchhhHHHHH
Q 004984 280 SLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVEIFSHANRQHRSIMVGLASFSLYCLL 351 (721)
Q Consensus 280 ~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l 351 (721)
+.+ +++||+.++.+|..|+++.|.+.|.+|+.+||.+ .|+.+++.++++++ +..|..++.+++
T Consensus 6 ~~L-~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~sd--------v~~E~~vf~av~ 76 (105)
T 2eqx_A 6 SGV-QVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG--------VPCSQNPTEAIE 76 (105)
T ss_dssp CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHTC--------EETTSCHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcCC--------CCCHHHHHHHHH
Confidence 345 4799999999999999999999999999988865 67888888999885 567888999999
Q ss_pred HHhhhcCCCCchhHHHHHHHHH
Q 004984 352 SEVAMNLDPRSDKTVCFLERLL 373 (721)
Q Consensus 352 ~wV~~d~~~rs~~~~~LLe~Lv 373 (721)
+||.+++..|..++.+||+..+
T Consensus 77 ~Wv~~d~~~R~~~~~~Ll~~VR 98 (105)
T 2eqx_A 77 AWINFNKEEREAFAESLRTSLK 98 (105)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCC
T ss_pred HHHHcCHHHHHHHHHHHHHHHH
Confidence 9999998888889999998743
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.60 E-value=1.7e-07 Score=81.76 Aligned_cols=72 Identities=13% Similarity=0.007 Sum_probs=68.4
Q ss_pred hCCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984 599 SDAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (721)
Q Consensus 599 l~P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~ 670 (721)
.+|.++++++.+|.++...+. .++|...+++|++++|+++.+++.+|.+++..|+|++|+..|+++++.+|.
T Consensus 1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 379999999999999988777 689999999999999999999999999999999999999999999999987
No 231
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.60 E-value=2.7e-07 Score=104.28 Aligned_cols=128 Identities=9% Similarity=-0.029 Sum_probs=101.6
Q ss_pred HHHhccchHHHHHHHHHHHhc-------cch---hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCCh
Q 004984 392 VRLLRKEYDEAEHLFEAAVNA-------GHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (721)
Q Consensus 392 ~~~~~g~y~eA~~~f~~AL~~-------~~~---~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~ 461 (721)
.+..+|+|++|+..|++|+++ +|. .++.++|.+|..+|++++|...+.+++++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~---------------- 381 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY---------------- 381 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH----------------
Confidence 455789999999999999987 233 357789999999999999999887666553
Q ss_pred hHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-HH---HHHHHHHHHHhcCCHHHH
Q 004984 462 DKRWEDLDKATA-LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-LE---CLELRFCFFLALEDYQAA 531 (721)
Q Consensus 462 ~eAl~d~~kAie-LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-----~P~-~~---~~~~R~~~~~~lgd~eeA 531 (721)
.+.+- -.|+-+..|+|+|.+|..+|++++|+..|++|+++ -|+ |. ...+++.++.++|++++|
T Consensus 382 -------~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 382 -------MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp -------HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 13445678999999999999999999999999986 354 43 335577899999999999
Q ss_pred HHHHHHHHhhC
Q 004984 532 LCDVQAILTLS 542 (721)
Q Consensus 532 l~d~~kal~L~ 542 (721)
...|+++.+-.
T Consensus 455 e~~~~~~~~~~ 465 (490)
T 3n71_A 455 EFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997743
No 232
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.55 E-value=7e-07 Score=82.86 Aligned_cols=82 Identities=10% Similarity=0.002 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHH
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRK 660 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~----~G~~deAl~~ 660 (721)
|+..+.++.+. +++.+++++|.++.. .+++++|+..|++|.+. .++++++++|.++.. .+++++|+..
T Consensus 44 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 119 (138)
T 1klx_A 44 LFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKT 119 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 47778888776 788999999999999 89999999999999987 689999999999999 9999999999
Q ss_pred HHHHHhcCCCHHHH
Q 004984 661 AEESIQMKRSFEAF 674 (721)
Q Consensus 661 ye~Ai~i~~~~~a~ 674 (721)
|++|.+.......+
T Consensus 120 ~~~Aa~~g~~~A~~ 133 (138)
T 1klx_A 120 FEKACRLGSEDACG 133 (138)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHH
Confidence 99999986544333
No 233
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.44 E-value=6.4e-07 Score=101.18 Aligned_cols=131 Identities=10% Similarity=-0.021 Sum_probs=103.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984 485 RASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (721)
Q Consensus 485 rg~~l~~lg~~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~ 555 (721)
.+..+..+|+|++|+..++++|++ -|+ + ..+.++|.+|..+|+|++|+..|++++++--..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~---------- 384 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL---------- 384 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----------
Confidence 344677899999999999999986 233 3 446778999999999999999999999852110
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh--
Q 004984 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-- 633 (721)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-- 633 (721)
+ + ...|.-+..++|+|.++..+|++++|+..|++|+++
T Consensus 385 ---------------------l-------G------------~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 385 ---------------------Y-------H------------HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp ---------------------S-------C------------TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------------c-------C------------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 0 0 012334556899999999999999999999999975
Q ss_pred ---CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 634 ---AASD---HERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 634 ---~P~~---~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
-|++ ++.+.+++.++..+|.+++|...|.+|.
T Consensus 425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 5566789999999999999999999985
No 234
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=5.3e-07 Score=85.83 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=81.6
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC-C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 591 SVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (721)
Q Consensus 591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg---~~eeAl~~~~~Al~l~-P-~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai 665 (721)
..|+..++.+|.+.++.|+.|.+|.+.+ ..++|+..++..++.+ | ++.+.+|++|..+|++|+|++|....++++
T Consensus 19 ~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 19 KKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3678888999999999999999999999 5569999999999999 7 679999999999999999999999999999
Q ss_pred hcCCCHH-HHHHHHH
Q 004984 666 QMKRSFE-AFFLKAY 679 (721)
Q Consensus 666 ~i~~~~~-a~~~~~~ 679 (721)
+++|++. |-.||-.
T Consensus 99 ~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 99 QTEPQNNQAKELERL 113 (152)
T ss_dssp HHCTTCHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHH
Confidence 9999987 8777654
No 235
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.41 E-value=6.6e-07 Score=79.20 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=69.8
Q ss_pred cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCC--------------C
Q 004984 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS--------------L 247 (721)
Q Consensus 183 DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~--------------l 247 (721)
-|+|+- +|+.|.++|.+ |..|.+++.||.+++ |+....|.|+ +|+..+|+.+++|+|... .
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp--~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w 80 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELK--QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEET--TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecC--CcCHHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence 377777 89999999997 899999999999887 7666789999 599999999999999743 2
Q ss_pred CCCCHHHHHHHHHHhhhcCh
Q 004984 248 NGVTPNLLLEILIFANKFCC 267 (721)
Q Consensus 248 ~~i~~~~v~~LL~aAd~~~v 267 (721)
. ++.+.+.+|+.||+++++
T Consensus 81 ~-vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 81 E-IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp C-CCHHHHHHHHHHHHHHCC
T ss_pred c-CCHHHHHHHHHHHHHhCc
Confidence 3 778999999999999875
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.41 E-value=1.2e-06 Score=77.36 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=70.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HH
Q 004984 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AF 674 (721)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~ 674 (721)
++.-++.+|..+...|+++.|+.+|+.|++.. +..++.+.++|.+++.+|++++|+..+++|++++|+.. +.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46678999999999999999999999999974 45688999999999999999999999999999999998 76
Q ss_pred HHHHHH
Q 004984 675 FLKAYA 680 (721)
Q Consensus 675 ~~~~~~ 680 (721)
+++++.
T Consensus 84 ~n~~~~ 89 (104)
T 2v5f_A 84 GNLKYF 89 (104)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 777643
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.40 E-value=7.6e-06 Score=85.64 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHh-cCCHHHH
Q 004984 462 DKRWEDLDKATALDPT--LSYPYMYRASSLMTK-----QNVEAALAEINRILGFKLA--LECLELRFCFFLA-LEDYQAA 531 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~--~~~ay~~rg~~l~~l-----g~~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~-lgd~eeA 531 (721)
.+|...++||++|||+ +..+|..+|.+|... |+.+.|...|+|||+++|+ .+..+..|..+.. +||+++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 7888999999999999 566999999999995 9999999999999999994 6777778877766 5999999
Q ss_pred HHHHHHHHhhCCCc
Q 004984 532 LCDVQAILTLSPDY 545 (721)
Q Consensus 532 l~d~~kal~L~P~~ 545 (721)
.+.+++|+..+|..
T Consensus 260 ~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 260 DEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCGGG
T ss_pred HHHHHHHHcCCCCC
Confidence 99999999999884
No 238
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.37 E-value=0.00017 Score=81.25 Aligned_cols=344 Identities=5% Similarity=-0.105 Sum_probs=192.4
Q ss_pred cccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHH-hhh-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-c--c
Q 004984 340 VGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLE-SAE-TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-G--H 414 (721)
Q Consensus 340 v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~-~a~-~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~--~ 414 (721)
+.+..-++..++.|.-. ...+.+..++++++. +|. +-|.....+... .....+.....|+.|+.. | +
T Consensus 11 i~~aR~vyer~l~~~P~---~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~-----~~~~~~~i~~~fe~al~~vg~d~ 82 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS---KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRK-----VSQKKFKLYEVYEFTLGQFENYW 82 (493)
T ss_dssp -CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH-----HC----CTHHHHHHHHHHSTTCT
T ss_pred hHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHcCCCc
Confidence 56788889999998843 346677889999886 442 223323332221 111335567789999875 3 2
Q ss_pred hhhHhhHHHHHH------HhCCHHHHHHHHHHHHhcCCCc--HHHHHHHhh----c-------------CChhHHHHHHH
Q 004984 415 IYSIAGLARLGY------IKGHKLWAYEKLNSVISSVTPL--GWMYQERSL----Y-------------CEGDKRWEDLD 469 (721)
Q Consensus 415 ~~A~~~lg~~~~------~~G~~~~A~~~~~~aI~~~~~~--~~ay~~rg~----~-------------~~~~eAl~d~~ 469 (721)
...-....-+.+ .+|+.+.+.+.|.+||.. |.. ...|..-.. + ..+..|...|.
T Consensus 83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~ 161 (493)
T 2uy1_A 83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQ 161 (493)
T ss_dssp TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHH
Confidence 221222222222 346788899999999994 431 111110000 0 01123344445
Q ss_pred HHHhcCCC-ChHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 470 KATALDPT-LSYPYMYRASSLMTKQN---------VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 470 kAieLdP~-~~~ay~~rg~~l~~lg~---------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
.+...-|. ....|.. .+-.+.++ .+.....|+++|...|. +..|..-+..+...|+.++|..-|++|
T Consensus 162 ~~~~~~~~~s~~~W~~--y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 162 QIQPLIRGWSVKNAAR--LIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHTCSHHHHHH--HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHH--HHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44443332 2223433 22223332 33467788999988885 677777777778889999999999999
Q ss_pred HhhCCCchhhhhhHHHH----HHHHHHHHhhh-----------hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCC
Q 004984 539 LTLSPDYRMFEGRVAAS----QLHMLVREHID-----------NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP 602 (721)
Q Consensus 539 l~L~P~~~~~~~~~~a~----~~~~~l~~~~~-----------~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~ 602 (721)
+.. |........-+.. ...+.+..... .......|.+......+.++.. |-.++.+| ...+.
T Consensus 240 i~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~ 317 (493)
T 2uy1_A 240 IEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGV 317 (493)
T ss_dssp HHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCC
T ss_pred HhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCC
Confidence 999 8864311100000 00001111100 0001122333332222223333 56688999 33333
Q ss_pred ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 004984 603 KGVLYFRQSLLLLRLN-CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (721)
Q Consensus 603 ~~~~~~~~g~~L~~lg-~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~ 681 (721)
....|...|.+....| .++.|...|+++++.-|++++.+...+..+...|+.+.|-..|+++.. ...++.+-..+
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~~~lw~~~~~f 393 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK----TSRMWDSMIEY 393 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----BHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 5567777777777777 599999999999999999998777777777888999999999999832 23444444444
Q ss_pred hccCCCCCchhhHHHHHHHhhc
Q 004984 682 ADSSQDSSCSSTVVSLLEDALK 703 (721)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~ 703 (721)
.-+.=| -.++-.++|.+++
T Consensus 394 E~~~G~---~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGS---MELFRELVDQKMD 412 (493)
T ss_dssp HHHHSC---HHHHHHHHHHHHH
T ss_pred HHHCCC---HHHHHHHHHHHHH
Confidence 433223 2344455566654
No 239
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.33 E-value=2.8e-06 Score=82.49 Aligned_cols=97 Identities=24% Similarity=0.258 Sum_probs=79.0
Q ss_pred cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHhhhhccCC-----------
Q 004984 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGS----------- 246 (721)
Q Consensus 183 DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~----------- 246 (721)
-|+|+- +|+.|.+++.+ |..|..++.|+.+.-. +.....|.|+ +|+..+|+.|++|++...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVP--NVRSSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECT--TCCHHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeC--CCCHHHHHHHHHHHHHcccCCCccccccc
Confidence 467766 78999999998 7889999999975332 2334789998 599999999999998743
Q ss_pred --------------CCCCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984 247 --------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (721)
Q Consensus 247 --------------l~~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (721)
+. ++.+.+.+|+.||++|++..|.+.|++.++..+.
T Consensus 85 ~~~~~~i~~wD~~Fl~-vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLK-VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp ---CCCCCHHHHHHTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHc-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 23 6678899999999999999999999999998875
No 240
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=4.8e-06 Score=79.23 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRILGFK-L-A-LECLELRFCFFLALEDYQAALCDV 535 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg---~~~eAl~~~~kAL~l~-P-~-~~~~~~R~~~~~~lgd~eeAl~d~ 535 (721)
..+...|+++++.+|...++.++.|.++...+ +.++||..++.+++.+ | + .+++|++|..+.++|+|++|++.+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 55667789999999999999999999999999 6779999999999998 7 3 789999999999999999999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 004984 536 QAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (721)
Q Consensus 536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~~ 565 (721)
+++++++|++. .+..+...++...
T Consensus 95 ~~lL~ieP~n~------QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 95 RGLLQTEPQNN------QAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHCTTCH------HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCH------HHHHHHHHHHHHH
Confidence 99999999993 3555555444443
No 241
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.30 E-value=7.1e-07 Score=78.53 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=63.9
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHhhhhccCC-----------CCC
Q 004984 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LNG 249 (721)
Q Consensus 184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~-----------l~~ 249 (721)
|+|+- +|+.|.++|.+ |..|.+++.||.+ .+.|+....|.|+ +|+..+|+.+++|+|... ..
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~- 78 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP- 78 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC-
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCC--CCCHHHHHHHHHHHHHccccCCCcccCCCcc-
Confidence 56666 89999999997 8999999999985 3467777899999 599999999999998743 23
Q ss_pred CCHHHHHHHHHHhhhcCh
Q 004984 250 VTPNLLLEILIFANKFCC 267 (721)
Q Consensus 250 i~~~~v~~LL~aAd~~~v 267 (721)
++.+.+.+|+.||+++++
T Consensus 79 vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 79 IAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCTTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 778899999999999875
No 242
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.29 E-value=2.8e-06 Score=73.97 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984 475 DPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (721)
Q Consensus 475 dP~~~~ay~~rg~~l~~lg~---~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~ 545 (721)
+|+++..+..+|.+++..++ .++|...+++||+++|+ +.....+|..+...|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68889999999999976665 68999999999999996 7888888999999999999999999999999883
No 243
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.12 E-value=1.1e-05 Score=72.34 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=77.2
Q ss_pred cEEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHH
Q 004984 183 NVVFRIHEEKIECDRQKFAALS-APFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLL 256 (721)
Q Consensus 183 DV~l~v~~~~~~aHr~vLAa~S-~yF~amF~~~~~----Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~ 256 (721)
-|+|.|||+.|...+..|.... .+|.+||.++.. .....++-|. -+|..|+.+|+|+.||++. ++.+ ...
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiD---Rdp~~F~~IL~~lr~g~l~-~p~~~~~~ 82 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKLV-INKDLAEE 82 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEEC---SCHHHHHHHHHHHHHSCCC-CCTTSCHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEec---CChHHHHHHHHHhCCCeeC-CCCCCCHH
Confidence 3789999999999999998775 478999987531 1234567775 8999999999999999997 6543 357
Q ss_pred HHHHHhhhcChhhHHHHHHHHHHh
Q 004984 257 EILIFANKFCCERLKDACDRKLAS 280 (721)
Q Consensus 257 ~LL~aAd~~~v~~L~~~C~~~L~~ 280 (721)
.++.-|++|+++.|++.|.+.+..
T Consensus 83 ~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 83 GVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899999999999999999988753
No 244
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.10 E-value=0.00015 Score=81.70 Aligned_cols=78 Identities=15% Similarity=0.031 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCC-HHHHHHHHHHHHhc---CCCcHHHHHHHhhcC--------ChhH
Q 004984 397 KEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGH-KLWAYEKLNSVISS---VTPLGWMYQERSLYC--------EGDK 463 (721)
Q Consensus 397 g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~-~~~A~~~~~~aI~~---~~~~~~ay~~rg~~~--------~~~e 463 (721)
|+++.|...|++|+.. .....|.....-....|+ .+.....|..|+.. +++.+..|..--.+. ..+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 7777777778877775 333334333332222332 22334455555543 444455444433221 1144
Q ss_pred HHHHHHHHHhc
Q 004984 464 RWEDLDKATAL 474 (721)
Q Consensus 464 Al~d~~kAieL 474 (721)
+...|++||..
T Consensus 108 vR~iy~rAL~~ 118 (493)
T 2uy1_A 108 IRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhC
Confidence 55566666664
No 245
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.97 E-value=1.4e-05 Score=88.72 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=70.7
Q ss_pred cCChhHHHHHHHHHHh-----cCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHH
Q 004984 458 YCEGDKRWEDLDKATA-----LDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFC 520 (721)
Q Consensus 458 ~~~~~eAl~d~~kAie-----LdP~~---~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~ 520 (721)
++++++|+..|++|++ |.|++ +..+.++|.+|..+|+|++|+..++++|++ -|+ | ..++++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3445777777777766 34554 577899999999999999999999999986 233 3 34678999
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----hCCCc
Q 004984 521 FFLALEDYQAALCDVQAILT-----LSPDY 545 (721)
Q Consensus 521 ~~~~lgd~eeAl~d~~kal~-----L~P~~ 545 (721)
+|..+|++++|+..|++|++ +.|++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999998 45666
No 246
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.95 E-value=1.6e-05 Score=88.32 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=69.8
Q ss_pred hHHHHHHHHHh-----CCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHhcC
Q 004984 589 SLSVIYQMLES-----DAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTS 652 (721)
Q Consensus 589 al~~~~qaL~l-----~P~~---~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l--------~P~~~ea~~~~G~~Ly~~G 652 (721)
|+..++++|++ .|.+ +..+.|+|.++..+|++++|+..+++|+++ .|+-+..++|+|.++..+|
T Consensus 317 A~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg 396 (433)
T 3qww_A 317 LLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLE 396 (433)
T ss_dssp HHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcc
Confidence 68899999985 4555 456899999999999999999999999976 4556677999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 004984 653 HCEEGLRKAEESIQM 667 (721)
Q Consensus 653 ~~deAl~~ye~Ai~i 667 (721)
+++||+..|+||++|
T Consensus 397 ~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 397 NKAAGEKALKKAIAI 411 (433)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999987
No 247
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.88 E-value=8.1e-05 Score=65.39 Aligned_cols=74 Identities=15% Similarity=0.057 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcc---------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE 454 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---------~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~ 454 (721)
...+.+|..+...|+|..|+.+|++|++.. ....+..+|.+++++|+++.|+..+++++++.|+...+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 345789999999999999999999999861 34457788888888888888888888888777777777666
Q ss_pred Hhh
Q 004984 455 RSL 457 (721)
Q Consensus 455 rg~ 457 (721)
++.
T Consensus 86 ~~~ 88 (104)
T 2v5f_A 86 LKY 88 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 248
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.83 E-value=7.6e-05 Score=82.77 Aligned_cols=92 Identities=8% Similarity=-0.038 Sum_probs=72.7
Q ss_pred HhccchHHHHHHHHHHHhc-------cch---hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhH
Q 004984 394 LLRKEYDEAEHLFEAAVNA-------GHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDK 463 (721)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~-------~~~---~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~e 463 (721)
..+|+|++|+..|++++++ +|. .++.++|.+|..+|++++|+..+.++++++
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~------------------ 359 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY------------------ 359 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------------
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH------------------
Confidence 3568999999999999976 232 357789999999999999998887666543
Q ss_pred HHHHHHHHH-hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984 464 RWEDLDKAT-ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF 508 (721)
Q Consensus 464 Al~d~~kAi-eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l 508 (721)
.+.+ .-.|+-+..|+|+|.+|..+|++++|+..|+||+++
T Consensus 360 -----~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 360 -----RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp -----HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3332 224455678899999999999999999999999975
No 249
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.80 E-value=3.2e-05 Score=69.82 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=63.5
Q ss_pred cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHhhhhccCC-----------CC
Q 004984 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LN 248 (721)
Q Consensus 183 DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~-----------l~ 248 (721)
-|+|+- +|..|.+++. .|..|..++.|+.+ .+.|+....|.|+ +|+..+|+.|++|++... ..
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCC--CCCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 467764 8999999999 47899999999985 3456666789999 599999999999998643 23
Q ss_pred CCCHHHHHHHHHHhhhcCh
Q 004984 249 GVTPNLLLEILIFANKFCC 267 (721)
Q Consensus 249 ~i~~~~v~~LL~aAd~~~v 267 (721)
++.+.+.+|+.||++|++
T Consensus 95 -vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 -IAPEIALELLMAANFLDC 112 (112)
T ss_dssp -CCHHHHHHHHHHHHHHTC
T ss_pred -cCHHHHHHHHHHHHHhCc
Confidence 788999999999999875
No 250
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.73 E-value=9.6e-05 Score=81.95 Aligned_cols=85 Identities=7% Similarity=-0.129 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATAL-----DPTL---SYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFCFFLA 524 (721)
Q Consensus 462 ~eAl~d~~kAieL-----dP~~---~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~~~~~ 524 (721)
++|+..|++++++ .|++ +..+.++|.+|..+|++++|+..+.++|++ -|+ | ..++++|.+|..
T Consensus 304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~ 383 (429)
T 3qwp_A 304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH 383 (429)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 4444555555442 3444 567899999999999999999999999986 233 4 345779999999
Q ss_pred cCCHHHHHHHHHHHHh-----hCCCch
Q 004984 525 LEDYQAALCDVQAILT-----LSPDYR 546 (721)
Q Consensus 525 lgd~eeAl~d~~kal~-----L~P~~~ 546 (721)
+|++++|+..|++|++ +.|+++
T Consensus 384 ~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 384 QGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 9999999999999998 567763
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.69 E-value=0.00011 Score=67.58 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEA---AMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee---Al~~~~~Al~l~-P-~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
-|+.++..++.+.++.|+.|.+|.+-+.+.+ ++..++..++-+ | ..-+.+|++|...|++|+|++|....+..++
T Consensus 23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5777888899999999999999999998888 999999999988 5 6889999999999999999999999999999
Q ss_pred cCCCHH-HHHHHHHH
Q 004984 667 MKRSFE-AFFLKAYA 680 (721)
Q Consensus 667 i~~~~~-a~~~~~~~ 680 (721)
++|++. |.-||...
T Consensus 103 ~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 103 TEPQNNQAKELERLI 117 (126)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHH
Confidence 999987 88888654
No 252
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.42 E-value=0.0015 Score=60.10 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA---ALAEINRILGFK-L-A-LECLELRFCFFLALEDYQAALCDV 535 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~e---Al~~~~kAL~l~-P-~-~~~~~~R~~~~~~lgd~eeAl~d~ 535 (721)
..+-..|.+++..++....+-++.|.++...++..+ +|..+...+.-+ | . -++++.++..+.++|+|++|++.+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455667888999899999999999999999998877 999999999877 6 2 578899999999999999999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHh
Q 004984 536 QAILTLSPDYRMFEGRVAASQLHMLVREH 564 (721)
Q Consensus 536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~ 564 (721)
+.+|+.+|++. .|..+...++..
T Consensus 98 ~~lL~~eP~n~------QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 98 RGLLQTEPQNN------QAKELERLIDKA 120 (126)
T ss_dssp HHHHHHCTTCH------HHHHHHHHHHHH
T ss_pred HHHHHhCCCCH------HHHHHHHHHHHH
Confidence 99999999993 355555544443
No 253
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.11 E-value=0.001 Score=65.84 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=75.7
Q ss_pred EEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCC--C--cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHH
Q 004984 184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSF--M--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (721)
Q Consensus 184 V~l~v~~~~~~aHr~vLAa~S-~yF~amF~~~~--~--Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~ 257 (721)
|+|.|||..|...+..|.... .+|..||.+.. . .....++-|. -+|..|+.||+|+.+|++. ++.+ ....
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFID---RDP~~F~~ILnyLRtG~L~-lP~~~~~~~ 89 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKLV-INKDLAEEG 89 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEEC---SCSTTHHHHHHHHHHSCCC-CCTTSCHHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEec---CChHHHHHHHHHhcCCccC-CCCCCCHHH
Confidence 789999999999999998654 38899998642 1 1124567775 7899999999999999998 6554 3478
Q ss_pred HHHHhhhcChhhHHHHHHHHHHh
Q 004984 258 ILIFANKFCCERLKDACDRKLAS 280 (721)
Q Consensus 258 LL~aAd~~~v~~L~~~C~~~L~~ 280 (721)
++.-|++|+++.|++.|.+.+..
T Consensus 90 l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 90 VLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHHH
Confidence 99999999999999999998864
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.62 E-value=0.021 Score=53.37 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=71.8
Q ss_pred CCChhHHHHHHHHHHHcCChH---HHHHHHHHHHHhCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 004984 601 APKGVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF 675 (721)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~e---eAl~~~~~Al~l~P-~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~ 675 (721)
+-++...|+.|.+|.+-+..+ +++..++..++-.| +.-+-+|+++...|++|+|++|...-+..++++|++. |--
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 678899999999999977665 79999999999998 5789999999999999999999999999999999987 777
Q ss_pred HHHHH
Q 004984 676 LKAYA 680 (721)
Q Consensus 676 ~~~~~ 680 (721)
||...
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 255
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.53 E-value=0.12 Score=58.07 Aligned_cols=153 Identities=10% Similarity=0.050 Sum_probs=110.7
Q ss_pred HHHHhccchHHHHHHHHHHHhcc--c-hhhHhhHHHHHHHh---------CCHHHHHHHHHHHHhc--CCCcHHHHHHH-
Q 004984 391 CVRLLRKEYDEAEHLFEAAVNAG--H-IYSIAGLARLGYIK---------GHKLWAYEKLNSVISS--VTPLGWMYQER- 455 (721)
Q Consensus 391 ~~~~~~g~y~eA~~~f~~AL~~~--~-~~A~~~lg~~~~~~---------G~~~~A~~~~~~aI~~--~~~~~~ay~~r- 455 (721)
..+.+.|++++|.+.|++..+.+ | ...|.-+-.++... |+.+.|.+.|.+..+. .|+ ...|...
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd-~~tyn~lI 112 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN-EATFTNGA 112 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC-HHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC-HHHHHHHH
Confidence 34567899999999999987764 2 22333333333332 3367888888877665 333 2222221
Q ss_pred ---hhcCChhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCH
Q 004984 456 ---SLYCEGDKRWEDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDY 528 (721)
Q Consensus 456 ---g~~~~~~eAl~d~~kAieL--dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~ 528 (721)
+..++.++|+..|++..+. .| +...|+.+-..+...|+.++|...|++..+ +.|+...+...-.++.+.|+.
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 2335559999999887764 45 567899999999999999999999999887 467877777788889999999
Q ss_pred HHHHHHHHHHHh--hCCCc
Q 004984 529 QAALCDVQAILT--LSPDY 545 (721)
Q Consensus 529 eeAl~d~~kal~--L~P~~ 545 (721)
++|.+.+++..+ ..|+-
T Consensus 192 d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 192 DKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHHHHHTSSBCH
T ss_pred HHHHHHHHHHHHhCCCcCH
Confidence 999999998876 55764
No 256
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.53 E-value=0.25 Score=55.53 Aligned_cols=84 Identities=13% Similarity=0.043 Sum_probs=60.9
Q ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 590 LSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 590 l~~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l--~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
+.++++|.+.. +-+...|+..=..+.+.|+.++|++.++...+. .|+ ...+..+=.++.+.|+.++|...+++--+
T Consensus 125 ~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 125 FDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 45555555542 224556666667788899999999999987764 444 55777777788899999999999998765
Q ss_pred --cCCCHHHH
Q 004984 667 --MKRSFEAF 674 (721)
Q Consensus 667 --i~~~~~a~ 674 (721)
++|+-..|
T Consensus 204 ~g~~ps~~T~ 213 (501)
T 4g26_A 204 LVRQVSKSTF 213 (501)
T ss_dssp HTSSBCHHHH
T ss_pred hCCCcCHHHH
Confidence 57877654
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.27 E-value=0.019 Score=53.01 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=69.8
Q ss_pred CCChhHHHHHHHHHHHcCChH---HHHHHHHHHHHhCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 004984 601 APKGVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF 675 (721)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~e---eAl~~~~~Al~l~P-~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~ 675 (721)
.-++...|+.|.+|.+-+..+ .++..+...++.+| ..-|-+|+++...|++|+|++|...-++.++++|++. |--
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 346789999999999977663 69999999999999 4689999999999999999999999999999999998 777
Q ss_pred HHHH
Q 004984 676 LKAY 679 (721)
Q Consensus 676 ~~~~ 679 (721)
||..
T Consensus 117 Lk~~ 120 (134)
T 3o48_A 117 LKSM 120 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.87 E-value=3.3 Score=47.69 Aligned_cols=282 Identities=9% Similarity=-0.040 Sum_probs=155.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHH
Q 004984 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR 464 (721)
Q Consensus 385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eA 464 (721)
..+.-+...+..|++..+...-. .+.-.+...+.....+...++.. ....+...|..+|+.+.+-.-|..+ .++
T Consensus 8 ~~~~~a~~a~~~~~~~~~~~l~~-~l~~~pL~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~---l~~ 81 (618)
T 1qsa_A 8 SRYAQIKQAWDNRQMDVVEQMMP-GLKDYPLYPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRF---VNE 81 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSG-GGTTSTTHHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH-hhcCCCcHHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHH---HHH
Confidence 34455556666777766644322 12223333333222223323321 2336667788899887776666544 222
Q ss_pred H------HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCH----------------HHHHHHH
Q 004984 465 W------EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK---LAL----------------ECLELRF 519 (721)
Q Consensus 465 l------~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~---P~~----------------~~~~~R~ 519 (721)
+ ..|-.--.-.|+....-.+.+.++...|+-.+|.....++.--- |+. +.+..|.
T Consensus 82 l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~ 161 (618)
T 1qsa_A 82 LARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERI 161 (618)
T ss_dssp HHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 2 23322222247788888888999999999988988888877542 221 1122233
Q ss_pred HHHHhcCCHHHHHHHHHH-------------HHhhCCCchhhhhh------H-HHHHHHHHHHHhhhhhhHHHH------
Q 004984 520 CFFLALEDYQAALCDVQA-------------ILTLSPDYRMFEGR------V-AASQLHMLVREHIDNWTIADC------ 573 (721)
Q Consensus 520 ~~~~~lgd~eeAl~d~~k-------------al~L~P~~~~~~~~------~-~a~~~~~~l~~~~~~~~~A~~------ 573 (721)
......|+...|...... ++.-+|........ . ......+..+....+.+.|..
T Consensus 162 ~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~ 241 (618)
T 1qsa_A 162 RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLA 241 (618)
T ss_dssp HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 445556666555443322 33344543221100 0 000001111111112222211
Q ss_pred -------------HHhhhhcccccc-ccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 004984 574 -------------WLQLYDRWSSVD-DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (721)
Q Consensus 574 -------------~~~l~~~~~~~d-d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e 639 (721)
|..+.-.....+ +.++...++++....+.+....+..+.++ +.|+++.|...+++.-.-.++...
T Consensus 242 ~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r 320 (618)
T 1qsa_A 242 QAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDE 320 (618)
T ss_dssp HHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCCCHHHHHHHHHHccccccccHh
Confidence 111111112223 44466677777765555544445555554 679999999999876665556788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (721)
Q Consensus 640 a~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~ 674 (721)
+.|.+|-++..+|+-++|-..|+++.. .++|=.+
T Consensus 321 ~~YW~~ra~~~~g~~~~a~~~~~~~a~-~~~fYg~ 354 (618)
T 1qsa_A 321 WRYWQADLLLERGREAEAKEILHQLMQ-QRGFYPM 354 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT-SCSHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc-CCChHHH
Confidence 899999999999999999999999987 5777443
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.82 E-value=0.19 Score=46.97 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=69.9
Q ss_pred CCCChHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 004984 475 DPTLSYPYMYRASSLMTKQNVE---AALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (721)
Q Consensus 475 dP~~~~ay~~rg~~l~~lg~~~---eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~ 549 (721)
++-.+.+-++.|-++....+.+ ++|..+...+.-.|. -++++.++..+.++|+|++|.+..+..|+.+|+|
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---- 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---- 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC----
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc----
Confidence 4667889999999999888754 799999999988884 5889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh
Q 004984 550 GRVAASQLHMLVREH 564 (721)
Q Consensus 550 ~~~~a~~~~~~l~~~ 564 (721)
..+..+...++..
T Consensus 111 --~QA~~Lk~~Ie~~ 123 (144)
T 1y8m_A 111 --KQVGALKSMVEDK 123 (144)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3455555544443
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.72 E-value=0.083 Score=48.73 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 004984 478 LSYPYMYRASSLMTKQNV---EAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (721)
Q Consensus 478 ~~~ay~~rg~~l~~lg~~---~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~ 552 (721)
.+.+-++.|-++...++. .++|..+...+.-.|. -++++.++..+.++|+|++|.+..+++++.+|+| .
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N------~ 112 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN------K 112 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC------H
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC------H
Confidence 467888888888887765 4789999999988884 6889999999999999999999999999999999 4
Q ss_pred HHHHHHHHHHHhhh
Q 004984 553 AASQLHMLVREHID 566 (721)
Q Consensus 553 ~a~~~~~~l~~~~~ 566 (721)
.|..+...++..+.
T Consensus 113 QA~~Lk~~Ie~ki~ 126 (134)
T 3o48_A 113 QVGALKSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566555555444
No 261
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=95.60 E-value=0.013 Score=53.57 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=64.9
Q ss_pred cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCC----CcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHH
Q 004984 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSF----MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (721)
Q Consensus 183 DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~----~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~ 257 (721)
=|+|.|||..|...+..|.... .+||...- ......++-|. =++..|+.||+|+.||++. ++.+ .+..
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnflR~G~l~-~p~~~~~~~ 86 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLH-YPRYECISA 86 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEEC---SCHHHHHHHHHHHHHSCBC-CCTTSCHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEEc---CChHHHHHHHHHHhcCCCC-CCCCcCHHH
Confidence 4889999999999999996542 23454311 11234567775 6999999999999999998 6654 4789
Q ss_pred HHHHhhhcChhhHH-HHHH
Q 004984 258 ILIFANKFCCERLK-DACD 275 (721)
Q Consensus 258 LL~aAd~~~v~~L~-~~C~ 275 (721)
++.-|++|+++.+. ..|+
T Consensus 87 l~~Ea~fy~i~~l~l~~cC 105 (124)
T 1s1g_A 87 YDDELAFYGILPEIIGDCC 105 (124)
T ss_dssp HHHHHHHTTCCGGGBCHHH
T ss_pred HHHHHHHcCCChHHHHHHH
Confidence 99999999999873 5544
No 262
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.53 E-value=0.01 Score=53.60 Aligned_cols=84 Identities=10% Similarity=0.124 Sum_probs=65.7
Q ss_pred EEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCC-CcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHHHHH
Q 004984 184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSF-MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILI 260 (721)
Q Consensus 184 V~l~v~~~~~~aHr~vLAa~S-~yF~amF~~~~-~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~LL~ 260 (721)
|+|.|||..|...+..|.... ..+.+||.+.. ......++-|. -+|..|+.||+|+.||++. ++.+ .+..++.
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnylR~G~l~-~p~~~~~~~~~~ 82 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD---RHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 82 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC---SCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe---cChHHHHHHHHHhcCCCCC-CCCcccHHHHHH
Confidence 889999999999999997653 35666776432 12344677776 7899999999999999997 6543 5788999
Q ss_pred HhhhcChhhHH
Q 004984 261 FANKFCCERLK 271 (721)
Q Consensus 261 aAd~~~v~~L~ 271 (721)
-|++|+++...
T Consensus 83 Ea~fy~i~~~~ 93 (115)
T 3kvt_A 83 ELEFWGLDSNQ 93 (115)
T ss_dssp HHHHHTCCGGG
T ss_pred HHHHhCCChHH
Confidence 99999999754
No 263
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.15 E-value=0.87 Score=49.25 Aligned_cols=66 Identities=6% Similarity=-0.094 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCHHH
Q 004984 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI-------QMKRSFEA 673 (721)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai-------~i~~~~~a 673 (721)
..++.++..+|++++|+..++++++.+|-+-.++..+=.+|+..|+..+|++.|++.- .+.|+-+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3466778899999999999999999999999999999999999999999999998864 46888883
No 264
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=95.08 E-value=0.0088 Score=53.12 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=64.3
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCC----CcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHHH
Q 004984 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSF----MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEI 258 (721)
Q Consensus 184 V~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~----~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~L 258 (721)
|+|.|||..|...+..|.... .+||...- ......++-|. =+|..|+.||+|+.||++. ++++ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p---~s~L~~~~~~~~~~~~~~~~FiD---Rdp~~F~~ILnflR~g~l~-~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYP---DTLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKLH-YPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSC---SSSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCC---CccccccCCcccccCCCCcEEEe---CCcHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 789999999999999997543 23454411 11233567776 6899999999999999997 6544 47889
Q ss_pred HHHhhhcChhhHH-HHHHH
Q 004984 259 LIFANKFCCERLK-DACDR 276 (721)
Q Consensus 259 L~aAd~~~v~~L~-~~C~~ 276 (721)
+.-|++|+++.+. ..|+.
T Consensus 75 ~~Ea~fy~i~~l~~~~cc~ 93 (105)
T 1nn7_A 75 DEELAFFGLIPEIIGDCCY 93 (105)
T ss_dssp HHHHHHHTCCSCCBCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 9999999999863 55543
No 265
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.85 E-value=0.36 Score=45.52 Aligned_cols=105 Identities=10% Similarity=-0.042 Sum_probs=63.1
Q ss_pred HHhccchhhHhhHHHHHHHhCCH------HHHHHHHHHHHhcCCCcH--------HHHHHH---hhcCChhHHHHHHHHH
Q 004984 409 AVNAGHIYSIAGLARLGYIKGHK------LWAYEKLNSVISSVTPLG--------WMYQER---SLYCEGDKRWEDLDKA 471 (721)
Q Consensus 409 AL~~~~~~A~~~lg~~~~~~G~~------~~A~~~~~~aI~~~~~~~--------~ay~~r---g~~~~~~eAl~d~~kA 471 (721)
.+..++.+.+..........|++ +.-.+.|++||+.-|+.. ..|.+- -...+.++|...|+.|
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34445555666555555666777 666677777777665421 111110 0113336777777777
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE 513 (721)
Q Consensus 472 ieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~ 513 (721)
+.+..+++..|...|.--.++|+...|...+.+||++.|.+.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 777777777777777777777777777777777777777543
No 266
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=94.77 E-value=0.019 Score=53.68 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=64.8
Q ss_pred cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHH
Q 004984 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (721)
Q Consensus 183 DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~ 257 (721)
=|+|.|||..|...+..|.... .+||...-+ .....++-|. =++..|+.||+|+.||++. ++.+ .+..
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFiD---Rdp~~F~~ILnflR~G~l~-~p~~~~~~~ 108 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLH-YPRYECISA 108 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEEC---SCHHHHHHHHHHHHHSSBC-CCTTSCHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEEe---CCcHHHHHHHHHHhcCCcC-CCCCcCHHH
Confidence 4889999999999999997532 345544111 1234567776 6999999999999999997 6554 4889
Q ss_pred HHHHhhhcChhhH-HHHHH
Q 004984 258 ILIFANKFCCERL-KDACD 275 (721)
Q Consensus 258 LL~aAd~~~v~~L-~~~C~ 275 (721)
++.-|++|+|+.+ +..|+
T Consensus 109 l~eEa~fy~i~~l~l~~CC 127 (140)
T 2nz0_B 109 YDDELAFYGILPEIIGDCC 127 (140)
T ss_dssp HHHHHHHHTCCGGGBCTTT
T ss_pred HHHHHHHcCCChHHHHHHH
Confidence 9999999999987 34443
No 267
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.77 E-value=0.087 Score=50.45 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhcCCCCh---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC---------------
Q 004984 462 DKRWEDLDKATALDPTLS---------YPYMYRASSLMTKQNVEAALAEINRILGFK------LA--------------- 511 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~---------~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~------P~--------------- 511 (721)
+.|+.-.+.++.+..++. ..+..+|.++...|+|..|...|++||.+. |+
T Consensus 37 ~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~ 116 (167)
T 3ffl_A 37 SNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQ 116 (167)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccc
Confidence 666665555555543333 478899999999999999999999998762 11
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 512 -----LECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 512 -----~~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
.+.-+..+.||.++|++++|+...+.+
T Consensus 117 ~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 117 CLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 133345567999999999999987764
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.61 E-value=0.16 Score=48.55 Aligned_cols=111 Identities=9% Similarity=-0.093 Sum_probs=70.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc--cchh---------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHH
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNA--GHIY---------SIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMY 452 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~---------A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~---~~~ay 452 (721)
..-.......|.|+.|+-..+.++.. ++.+ ++.++|.+++..|+|..|...|.+|+..... ....+
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 44455566778888888888887666 2233 5677888899999999998888888775321 11110
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (721)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kA 505 (721)
-..|-. ..+-..+.+ +...+..+..|.+++++|++++||..+..+
T Consensus 104 ~~~~~~-------ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 104 PSTGNS-------ASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccc-------CCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 000000 001111223 556688899999999999999999997753
No 269
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=94.32 E-value=0.027 Score=49.49 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=61.6
Q ss_pred EEEEEcCeEEEeehhhhhcCC-HHHHHhhcC-CCCcCCcceEEeCCCCCCHHHHHHHhhhhcc-CCCCCCCHH-HHHHHH
Q 004984 184 VVFRIHEEKIECDRQKFAALS-APFSAMLNG-SFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPN-LLLEIL 259 (721)
Q Consensus 184 V~l~v~~~~~~aHr~vLAa~S-~yF~amF~~-~~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt-g~l~~i~~~-~v~~LL 259 (721)
|+|.|||..|...+..|...- ..+.+||.. ........++-|. -+|..|+.||+|+.| |++. ++++ .+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiD---Rdp~~F~~ILnflR~~G~l~-~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD---RNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC---SCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEc---CChHHHHHHHHHHhcCCccc-CCCCCCHHHHH
Confidence 789999999999999996431 123334432 1111234677775 789999999999999 8987 5543 578899
Q ss_pred HHhhhcChhhHH
Q 004984 260 IFANKFCCERLK 271 (721)
Q Consensus 260 ~aAd~~~v~~L~ 271 (721)
.-|++|+++.+.
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999998744
No 270
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.94 E-value=0.62 Score=50.41 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 481 PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
+...++.++..+|++++|+..+.++++.+|- -..+..+-.++...|+..+|++.|++.-+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455777888899999999999999999995 45555566688899999999998887654
No 271
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.86 E-value=0.61 Score=43.98 Aligned_cols=53 Identities=13% Similarity=-0.025 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (721)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (721)
+-.+|+.|+.++...+..|...|..-.+.|....|...+.+|+.+.|...+.+
T Consensus 79 aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 79 ARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp CHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 47789999999999999999999999999999999999999999999877653
No 272
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.62 E-value=3.2 Score=47.91 Aligned_cols=47 Identities=9% Similarity=-0.131 Sum_probs=29.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 488 SLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (721)
Q Consensus 488 ~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~ka 538 (721)
...++|++++|+...+. -.+...|...|..+.+.|+++.|+++|.++
T Consensus 661 ~~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44556677777665321 123566666777777777777777777765
No 273
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.59 E-value=0.23 Score=58.57 Aligned_cols=59 Identities=17% Similarity=0.013 Sum_probs=54.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (721)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y 661 (721)
...+..-++.-|...|+++-|+...++|....|++=..++.++.+|..+|+||.||-..
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 34577788998999999999999999999999999999999999999999999999543
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.35 E-value=1.1 Score=46.22 Aligned_cols=129 Identities=13% Similarity=0.052 Sum_probs=87.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 004984 487 SSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (721)
Q Consensus 487 ~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~ 565 (721)
..+.+.|+.++|++.....|+-+|. .+.=....-++.-.|+++.|..-++.+.+++|++.. .+...+.+++..+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~-----~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP-----GASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH-----HHHHHHHHHHHHH
Confidence 3567789999999999999999995 554455667888999999999999999999999842 2222244444333
Q ss_pred hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004984 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (721)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (721)
.+-+-. .....-.-++ +|..-....-.++.....|+.++|.+.-.+|++..|..+
T Consensus 80 ~R~~vf-------aG~~~P~~~g-----------~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 80 ARKDFA-------QGAATAKVLG-----------ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHT-------TSCCCEECCC-----------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHH-------cCCCCCCCCC-----------CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 332222 1111111111 122223334466777888999999999999999998754
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.17 E-value=3.1 Score=47.94 Aligned_cols=237 Identities=11% Similarity=-0.025 Sum_probs=141.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHH---h--hc-CC-hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 004984 422 ARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQER---S--LY-CE-GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (721)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~~-~~~~ay~~r---g--~~-~~-~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg 493 (721)
+.....+.+.+.|...+.+.....+ +.......+ + .. .. ..++...+.+++...++....-...+.++ ..|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCC
Confidence 4445566688888888776544322 212211111 1 11 11 35677777776655444433333333444 569
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 004984 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 572 (721)
Q Consensus 494 ~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~ 572 (721)
+++.|...|++.-.-.++ +...|-+|.++.++|+.++|...|+++.. +. .|+|..++..+... ...
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~lAa~~Lg~~-------~~~-- 366 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMVAAQRIGEE-------YEL-- 366 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHHHHHHTTCC-------CCC--
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHHHHHHcCCC-------CCC--
Confidence 999999999876543223 56667788899999999999999999986 33 25665544443210 000
Q ss_pred HHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984 573 CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (721)
Q Consensus 573 ~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G 652 (721)
......... ...+..+| -+.++..|..+|...+|..-.+.+++.. +.+-...++.+....|
T Consensus 367 -------~~~~~~~~~-----~~~~~~~~-----~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~ 427 (618)
T 1qsa_A 367 -------KIDKAPQNV-----DSALTQGP-----EMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQ 427 (618)
T ss_dssp -------CCCCCCSCC-----CCHHHHSH-----HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTT
T ss_pred -------CCCCCChhH-----HhhhccCh-----HHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCC
Confidence 000000000 01122222 3577888999999999999888877643 2444557788888899
Q ss_pred CHHHHHHHHHHHHhcC------C--------------CHHHHHHHHHHhhccCCCCCch
Q 004984 653 HCEEGLRKAEESIQMK------R--------------SFEAFFLKAYALADSSQDSSCS 691 (721)
Q Consensus 653 ~~deAl~~ye~Ai~i~------~--------------~~~a~~~~~~~~~~~~~~~~~~ 691 (721)
.++.++....++-..+ | .....++.|++.-.|+.||..-
T Consensus 428 ~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 428 WWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp CHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred ChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 9998886655432221 1 1223467778888888888643
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.53 E-value=8.3 Score=41.84 Aligned_cols=89 Identities=15% Similarity=-0.006 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-chhhhhhHHH
Q 004984 483 MYRASSLMTKQNVEAALAEINRILGF----KLAL---ECLELRFCFFLALEDYQAALCDVQAILTLSPD-YRMFEGRVAA 554 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~l----~P~~---~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~-~~~~~~~~~a 554 (721)
.++|..|.+.|+|.+|+..+++.+.- +... +.+-....+|..+|++..+.+.|.+|.+.... +..-..++..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 37999999999999999999998873 2122 22333456899999999999999999876411 1111223444
Q ss_pred HHHHHHHHH-hhhhhhHH
Q 004984 555 SQLHMLVRE-HIDNWTIA 571 (721)
Q Consensus 555 ~~~~~~l~~-~~~~~~~A 571 (721)
....|.... ..++|.+|
T Consensus 183 ~~~~Gi~~l~~~rdyk~A 200 (394)
T 3txn_A 183 DLQSGILHAADERDFKTA 200 (394)
T ss_dssp HHHHHHHHHHTTSCHHHH
T ss_pred HHHhhHHHHHhccCHHHH
Confidence 555555555 57777777
No 277
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.49 E-value=2.8 Score=40.34 Aligned_cols=114 Identities=18% Similarity=0.089 Sum_probs=84.1
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCchhh
Q 004984 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT----LSPDYRMF 548 (721)
Q Consensus 474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~----L~P~~~~~ 548 (721)
|-|..++.-+-++.++.-.|.|..|+-.+. +.+ .-..+.-..++.+++||..|+...+.+++ .||+-.
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d-- 100 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD-- 100 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC--
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc--
Confidence 456667777889999999999888876543 333 45567788999999999999999999994 345421
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH-HHHHHHHHHcCChHHHHHHH
Q 004984 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY-FRQSLLLLRLNCPEAAMRSL 627 (721)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~-~~~g~~L~~lg~~eeAl~~~ 627 (721)
++ -+..-+||.+-+.+ ...|.++...|..+||++.+
T Consensus 101 ----------------------~~---------------------~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~ 137 (242)
T 3kae_A 101 ----------------------AR---------------------IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY 137 (242)
T ss_dssp ----------------------HH---------------------HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------cc---------------------cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence 11 12233568887764 55799999999999999999
Q ss_pred HHHHHhCCCC
Q 004984 628 QLARQHAASD 637 (721)
Q Consensus 628 ~~Al~l~P~~ 637 (721)
.+...+.|--
T Consensus 138 ~~Sf~~~~lf 147 (242)
T 3kae_A 138 VRSFGKSFLF 147 (242)
T ss_dssp HHHHHHCCCH
T ss_pred hhhcCCcccc
Confidence 9999998853
No 278
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.16 E-value=0.77 Score=51.56 Aligned_cols=63 Identities=14% Similarity=-0.043 Sum_probs=34.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
+|.+-........|...|++|+.++|+++..++.+|.+....|+.-+|+=.|-||+.-...|+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~ 220 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh
Confidence 444444444445555556666666666665555566555555555555555555555444444
No 279
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.95 E-value=1.6 Score=51.51 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=42.0
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (721)
Q Consensus 459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kA 505 (721)
++++-|+..-.+|+.+-|..-.+|+.++.+|..+|+|+.|+-.+|-.
T Consensus 351 ~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 351 GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34488999999999999999999999999999999999999887754
No 280
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=84.88 E-value=11 Score=43.27 Aligned_cols=110 Identities=9% Similarity=-0.049 Sum_probs=58.9
Q ss_pred HHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHH
Q 004984 393 RLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT 472 (721)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAi 472 (721)
..+.|++++|.+.. -.++....|..+|..+.+.|+++.|.+.|.++ +++ +.+...|.
T Consensus 662 ~l~~~~~~~A~~~~---~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~--------------~d~---~~l~~l~~--- 718 (814)
T 3mkq_A 662 ALKVGQLTLARDLL---TDESAEMKWRALGDASLQRFNFKLAIEAFTNA--------------HDL---ESLFLLHS--- 718 (814)
T ss_dssp HHHHTCHHHHHHHH---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------TCH---HHHHHHHH---
T ss_pred hhhcCCHHHHHHHH---HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc--------------cCh---hhhHHHHH---
Confidence 34566666665542 23455666777888888888888887776532 111 22222211
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004984 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCD 534 (721)
Q Consensus 473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d 534 (721)
...+..-...+|......|+++.|...|-+. . ++ .....+|.+++++++|+.-
T Consensus 719 --~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~---g-~~---~~a~~~~~~~~~~~~A~~l 771 (814)
T 3mkq_A 719 --SFNNKEGLVTLAKDAETTGKFNLAFNAYWIA---G-DI---QGAKDLLIKSQRFSEAAFL 771 (814)
T ss_dssp --HTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---T-CH---HHHHHHHHHTTCHHHHHHH
T ss_pred --HcCCHHHHHHHHHHHHHcCchHHHHHHHHHc---C-CH---HHHHHHHHHcCChHHHHHH
Confidence 1334455556666666666666665554331 0 11 1122345666666666653
No 281
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.61 E-value=2.1 Score=43.99 Aligned_cols=60 Identities=15% Similarity=-0.023 Sum_probs=54.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
-+++-|..++|+......++-+|.|++....+-.+|.-.|+++.|.+..+-+..++|++.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 457788999999999999999999999999999999999999999999999999999988
No 282
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.48 E-value=20 Score=44.17 Aligned_cols=134 Identities=13% Similarity=0.038 Sum_probs=84.6
Q ss_pred HHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHhhcCChhHHHHHHHHH
Q 004984 393 RLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV-TPLGWMYQERSLYCEGDKRWEDLDKA 471 (721)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~-~~~~~ay~~rg~~~~~~eAl~d~~kA 471 (721)
....++++-|.+ +..=+..++. ..+-+|+++...|++++|+..|.+|..-- .... .. .....+......
T Consensus 822 l~~~~~~~~~~~-l~~~~~~~~~-~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~-------l~-~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 822 LFLFKQYNACMQ-LIGWLNSDPI-AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS-------QF-AVLREFQEIAEK 891 (1139)
T ss_dssp HHHHSCTTHHHH-HHHHSCCCHH-HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC-------SC-SSHHHHHHHHHT
T ss_pred HHHhhhHHHHHH-HhhhccCCcH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch-------hh-hhhccccccccc
Confidence 444555554433 2222222333 34668999999999999999999875421 1100 00 001122222333
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHH-----HHHHHHHHHHhcCCHHHHHHHHH
Q 004984 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALE-----CLELRFCFFLALEDYQAALCDVQ 536 (721)
Q Consensus 472 ieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~-----~~~~R~~~~~~lgd~eeAl~d~~ 536 (721)
.......+..|.....++-+.|.++.++.-...||+..+ +.+ .|.+....+.++|+|++|-....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 334455567788888899999999999999999999754 322 34555678999999999976554
No 283
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=81.29 E-value=3.9 Score=45.80 Aligned_cols=60 Identities=15% Similarity=-0.029 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCHHHHHHHHHH
Q 004984 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK-LALECLELRFCF 521 (721)
Q Consensus 462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~-P~~~~~~~R~~~ 521 (721)
..|...|.+|+.++|++..+|+.+|.+....|+.-+|+-.|-|++.-. |-+.+..+...+
T Consensus 169 ~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 566777777777777777777777777777777777777777777653 334444444443
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=79.12 E-value=47 Score=31.97 Aligned_cols=53 Identities=19% Similarity=0.017 Sum_probs=42.6
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 004984 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (721)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~ 443 (721)
.+|.+..-.|+|..|.-.. .+++-.-+.++-+.++..+.|+..|+..+++.|+
T Consensus 38 L~~I~LyyngEY~R~Lf~L---~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~ 90 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHL---HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILE 90 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHH---HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhhhhhhhcchHhHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688888889988875543 3356667778888999999999999999999884
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.52 E-value=2.1 Score=48.13 Aligned_cols=37 Identities=14% Similarity=-0.003 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (721)
+.++|..|.+....+++.+|.+.+..|++..|.+..+
T Consensus 270 ~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 270 ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 5678889999999999999999999999999876543
No 286
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.96 E-value=15 Score=40.00 Aligned_cols=69 Identities=6% Similarity=0.005 Sum_probs=52.6
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLS 542 (721)
Q Consensus 474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~ 542 (721)
-+..-..++..+|..|.+.|++++|+..|.++...-.+ .+.+.....++...||+..|...+.++..+-
T Consensus 126 ~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 126 GELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI 198 (429)
T ss_dssp CCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 34445678888999999999999999999998875432 3444445557788899999999999987754
No 287
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.65 E-value=18 Score=44.44 Aligned_cols=139 Identities=12% Similarity=0.041 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHH
Q 004984 484 YRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLV 561 (721)
Q Consensus 484 ~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal~-L~P~~~~~~~~~~a~~~~~~l 561 (721)
.+..-++..|+++-|.. +. .+-| ++..-+.+|.++...|++++|...|++|.. +.++.... ... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~-l~---~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-~~~--~~----- 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ-LI---GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-AVL--RE----- 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH-HH---HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-SSH--HH-----
T ss_pred HHHHHHHHhhhHHHHHH-Hh---hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-hhh--cc-----
Confidence 45556777777765543 33 3445 455558899999999999999999998754 22222100 000 00
Q ss_pred HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--
Q 004984 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-- 639 (721)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-- 639 (721)
+..+........+-+.+|.....++.+.|.++.+++..+.|++..+.+.+
T Consensus 885 ----------------------------~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~ 936 (1139)
T 4fhn_B 885 ----------------------------FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL 936 (1139)
T ss_dssp ----------------------------HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH
T ss_pred ----------------------------cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh
Confidence 00000001112223445556666777788888888888888887754433
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHH
Q 004984 640 ---RLVYEGWILYDTSHCEEGLRKAE 662 (721)
Q Consensus 640 ---a~~~~G~~Ly~~G~~deAl~~ye 662 (721)
.+.+.=....++|+|++|....-
T Consensus 937 ~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 937 SIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 23333344667788888765553
No 288
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.57 E-value=29 Score=37.55 Aligned_cols=58 Identities=10% Similarity=-0.112 Sum_probs=43.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 609 RQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (721)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P------~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~ 666 (721)
++|.++...|++.+|+..+.+.++--. .--|.+..+..++..+|++.++-+.|++|..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 678888888899888888888877422 2345566777778888888888888888743
No 289
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=68.60 E-value=36 Score=41.46 Aligned_cols=103 Identities=5% Similarity=-0.135 Sum_probs=50.1
Q ss_pred HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH
Q 004984 418 IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA 497 (721)
Q Consensus 418 ~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~e 497 (721)
+.-+-..+.+.|+.++|.+.|.+..+.. .-...| +...|+-+-..|...|+.++
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~-------------------------~kG~~P-dvvTYNtLI~Glck~G~~~e 183 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQR-------------------------QKRKLL-TLDMYNAVMLGWARQGAFKE 183 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSH-------------------------HHHTTC-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHh-------------------------hcCCCC-CHhHHHHHHHHHHhCCCHHH
Confidence 3444556777777777777765322110 001122 23345555555555555555
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh--hCCCch
Q 004984 498 ALAEINRILG--FKLALECLELRFCFFLALED-YQAALCDVQAILT--LSPDYR 546 (721)
Q Consensus 498 Al~~~~kAL~--l~P~~~~~~~R~~~~~~lgd-~eeAl~d~~kal~--L~P~~~ 546 (721)
|+..|++..+ +.||.-.|...-..+.+.|+ .++|.+.|+.-.+ +.||..
T Consensus 184 A~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v 237 (1134)
T 3spa_A 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237 (1134)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence 5555555544 34444444443334444444 3455555555444 334443
No 290
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.58 E-value=4.5 Score=35.15 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhc
Q 004984 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (721)
Q Consensus 250 i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l 282 (721)
++++|...++.+|+.|+++.|++.|.+|+....
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF 40 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHL 40 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999998765
No 291
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=62.39 E-value=7.2 Score=43.79 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=60.5
Q ss_pred cEEEEEcCeEEEeehhhhhcCCHHHHHhhcC-----CCCcCCcceEEeCCCCCCHHHHHHHhhhhcc-CCCCCCCHH-HH
Q 004984 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNG-----SFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPN-LL 255 (721)
Q Consensus 183 DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~-----~~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt-g~l~~i~~~-~v 255 (721)
=|++.|||..|...+..|.-. =.+|+.. ........++-|. =+|..|+.+|+|+.| |++. .+.+ .+
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~---p~s~l~~~~~~~~~~~~~~~~~f~D---R~~~~F~~IL~~~r~~g~l~-~p~~~~~ 125 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQF---PETLLGDPKKRMRYFDPLRNEYFFD---RNRPSFDAILYYYQSGGRLR-RPVNVPL 125 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTS---TTSTTTCHHHHGGGEETTTTEEEEC---SCHHHHHHHHHHHHHTSCCC-CCTTSCH
T ss_pred EEEEEeCCEEEEecHHHHhcC---CCCcccccccCCcccCCCCCCEEEc---CChHHHHHHHHHHhcCCccc-cCCcccH
Confidence 378999999999999999643 2223322 1112344677775 789999999999999 9987 5544 46
Q ss_pred HHHHHHhhhcChhhHH
Q 004984 256 LEILIFANKFCCERLK 271 (721)
Q Consensus 256 ~~LL~aAd~~~v~~L~ 271 (721)
..++.=|++|+++.+.
T Consensus 126 ~~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 126 DIFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHhcCCCHHH
Confidence 7788999999998754
No 292
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=61.69 E-value=57 Score=31.20 Aligned_cols=50 Identities=20% Similarity=0.021 Sum_probs=36.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 487 SSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 487 ~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
..-+++|+++.|.+..+.. .+...|..+|..-...|+++=|.++|+++-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3445678888888776543 3466777788888888888888888887643
No 293
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.53 E-value=1.2e+02 Score=33.88 Aligned_cols=65 Identities=14% Similarity=-0.016 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccc-------hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-------IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL 448 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-------~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~ 448 (721)
..++.+=..|+..+.|+.|.....++.-+.+ ...++++|+++..+++|.+|.+.+..|+..-|..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3334444556677899999999998854311 2246678999999999999999999888876643
No 294
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.43 E-value=30 Score=37.49 Aligned_cols=99 Identities=13% Similarity=-0.028 Sum_probs=61.6
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 004984 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (721)
Q Consensus 415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~ 494 (721)
..++..+|..++..|++.+|.+.|.++...-...+ .-.+.+...-.+....++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~---------------------------~kid~~l~~irl~l~~~d 183 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG---------------------------AKIDVMLTIARLGFFYND 183 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC---------------------------SHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH---------------------------HHHHHHHHHHHHHHHhcc
Confidence 44667788888888888888888776554322111 112344555556666777
Q ss_pred HHHHHHHHHHHHhc---CCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 495 VEAALAEINRILGF---KLALEC----LELRFCFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 495 ~~eAl~~~~kAL~l---~P~~~~----~~~R~~~~~~lgd~eeAl~d~~kal~ 540 (721)
+..|...++||-.+ .++++. ....|..+...++|.+|-..|-.++.
T Consensus 184 ~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 184 QLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 77777777777554 122221 12234567778888888888777654
No 295
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=55.46 E-value=57 Score=27.14 Aligned_cols=32 Identities=9% Similarity=0.014 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 004984 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (721)
Q Consensus 380 lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~ 411 (721)
+++++.+...++.....|+|++|+.+|..||+
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444555555556666666666666666554
No 296
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=55.44 E-value=17 Score=30.40 Aligned_cols=34 Identities=21% Similarity=0.056 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc
Q 004984 398 EYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444 (721)
Q Consensus 398 ~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~ 444 (721)
-.+.|+....+|++. .+.|++.+|+..|..+|+.
T Consensus 15 ~~~~Ai~lv~~Ave~-------------D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 15 LEEMARKYAINAVKA-------------DKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------HHhccHHHHHHHHHHHHHH
Confidence 356677777777654 5568888888888877775
No 297
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=54.75 E-value=56 Score=27.09 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=10.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHHH
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAV 410 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL 410 (721)
...++.....|+|++|+.+|..||
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 333344444444444444444443
No 298
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=51.76 E-value=15 Score=31.47 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984 479 SYPYMYRASSLMTKQNVEAALAEINRILG 507 (721)
Q Consensus 479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~ 507 (721)
+..|-.|+..+...|+|+|||+...+|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56677899999999999999998888773
No 299
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=49.91 E-value=18 Score=30.90 Aligned_cols=29 Identities=21% Similarity=0.029 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (721)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (721)
+..+-+++..+.+-|+++||++..++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67788999999999999999998887763
No 300
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=47.85 E-value=27 Score=37.26 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=32.1
Q ss_pred HHHHHHHHHhc-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 464 RWEDLDKATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (721)
Q Consensus 464 Al~d~~kAieL-----dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL 506 (721)
++.-|.+||.. +-.+.+||.++|..+.+.+++.||+..+-.|-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 56666666654 44567888888888888888888888776654
No 301
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=47.71 E-value=28 Score=29.00 Aligned_cols=33 Identities=24% Similarity=0.040 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc
Q 004984 399 YDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444 (721)
Q Consensus 399 y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~ 444 (721)
.+.|+....+|++. .+.|++.+|+..|..+|+.
T Consensus 8 ~~~Ai~lv~~Ave~-------------D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVKA-------------DKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHhccHHHHHHHHHHHHHH
Confidence 44677777777664 5568888888888887775
No 302
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=46.95 E-value=27 Score=37.83 Aligned_cols=43 Identities=28% Similarity=0.282 Sum_probs=31.6
Q ss_pred HHHHHHHHHhc-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984 464 RWEDLDKATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (721)
Q Consensus 464 Al~d~~kAieL-----dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL 506 (721)
++.-|.+||.- +-.+.++|.++|..+.+.+++.||+..+-.|-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 45556666654 44567888888888888888888888776654
No 303
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=46.79 E-value=13 Score=34.53 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (721)
Q Consensus 250 i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (721)
++.+|+.+++..|+.|+++.|++.|.+|+.....
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999998764
No 304
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.30 E-value=66 Score=29.98 Aligned_cols=97 Identities=16% Similarity=0.080 Sum_probs=59.1
Q ss_pred hHHHHHHHhhhcCCCCchhHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhh--H
Q 004984 346 SLYCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYS--I 418 (721)
Q Consensus 346 ~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A--~ 418 (721)
+..-.++|+.-...........+||++++-. ..+..+.. +-.+=..+.. ..+++...|.-.... |...| |
T Consensus 28 ~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~R-yLklWl~ya~--~~~dp~~if~~L~~~~IG~~~AlfY 104 (152)
T 4a1g_A 28 EWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPR-FISYCLKFAE--YNSDLHQFFEFLYNHGIGTLSSPLY 104 (152)
T ss_dssp HHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHH-HHHHHHHHHT--TBSCHHHHHHHHHTTTTTTTBHHHH
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHH-HHHHHHHHHH--hcCCHHHHHHHHHHCCCcHHHHHHH
Confidence 4556678887666545556778999876533 11111111 1111111221 234577788776544 44444 4
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 004984 419 AGLARLGYIKGHKLWAYEKLNSVISSV 445 (721)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~ 445 (721)
..-|..+...|++.+|.+.|...|+..
T Consensus 105 e~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 105 IAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 556778899999999999999999864
No 305
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=46.24 E-value=1.5e+02 Score=36.28 Aligned_cols=70 Identities=9% Similarity=0.022 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCchhhh
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRIL-----GFKLALECLELRFCFFLALEDYQAALCDVQAILT--LSPDYRMFE 549 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL-----~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~--L~P~~~~~~ 549 (721)
..|+.+-..|...|+.++|...|++.- ...|+...|+..-..|.+.|+.++|+.-|+.-.+ +.||-..|.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 457778889999999999999997643 4689988888888888999999999999999987 668864443
No 306
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=41.41 E-value=1.4e+02 Score=28.37 Aligned_cols=42 Identities=12% Similarity=-0.034 Sum_probs=22.5
Q ss_pred hccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHH
Q 004984 395 LRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLN 439 (721)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~ 439 (721)
+.|+++.|.+.-+. ++...-|..+|.....+|++.-|.++|.
T Consensus 17 ~lg~l~~A~e~a~~---l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 17 EYGNLDAALDEAKK---LNDSITWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HTTCHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHH---hCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44555555444222 2444455556666666666666655554
No 307
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.99 E-value=1.7e+02 Score=31.78 Aligned_cols=133 Identities=13% Similarity=0.059 Sum_probs=79.2
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--cc------hh
Q 004984 349 CLLSEVAMNLDPRSDKTVCFLERLLESAET----DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GH------IY 416 (721)
Q Consensus 349 ~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~----~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~------~~ 416 (721)
-++.|+...+.........+++.+...... ...++.....++..+...|++.+|.........- +. ..
T Consensus 99 ~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve 178 (445)
T 4b4t_P 99 KVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQ 178 (445)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 456777655432223344555553322211 1123444467899999999999999988875322 11 22
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcC
Q 004984 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPT---LSYPYMYRASSLMTKQ 493 (721)
Q Consensus 417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~---~~~ay~~rg~~l~~lg 493 (721)
.+..-.+++...|++..|...++++-.. +....|. -...|...|.++...+
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~--------------------------~~~~~~~~~lk~~~~~~~~~~~~~e~ 232 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKK--------------------------TFKNPKYESLKLEYYNLLVKISLHKR 232 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------HHHSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------hcccCCcHHHHHHHHHHHHHHHHHhh
Confidence 3445577888888888887776654210 1111110 0234566778888888
Q ss_pred CHHHHHHHHHHHHh
Q 004984 494 NVEAALAEINRILG 507 (721)
Q Consensus 494 ~~~eAl~~~~kAL~ 507 (721)
+|.+|-..|..++.
T Consensus 233 ~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 233 EYLEVAQYLQEIYQ 246 (445)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 88888888888875
No 308
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.30 E-value=33 Score=28.42 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 380 lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
++++..+...++-....|+|++|+..|..||+.
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555666666777888888888777664
No 309
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=38.72 E-value=35 Score=30.36 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 380 lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
+++++.+...++-....|+|++|+.+|..||+.
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334445555555666677888888877777664
No 310
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=38.47 E-value=48 Score=28.11 Aligned_cols=10 Identities=10% Similarity=-0.253 Sum_probs=4.4
Q ss_pred CCHHHHHHHH
Q 004984 429 GHKLWAYEKL 438 (721)
Q Consensus 429 G~~~~A~~~~ 438 (721)
|++.+|+..|
T Consensus 29 g~y~eAl~~Y 38 (93)
T 1wfd_A 29 SRYQQALVCY 38 (93)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4444444443
No 311
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=38.34 E-value=36 Score=27.83 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 004984 483 MYRASSLMTKQNVEAALAEINRILGFKLALEC 514 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~ 514 (721)
..+|..+...|++++|+..|-+||..-|+|..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45888899999999999999999998888653
No 312
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.16 E-value=2.5e+02 Score=25.89 Aligned_cols=12 Identities=17% Similarity=-0.031 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHh
Q 004984 462 DKRWEDLDKATA 473 (721)
Q Consensus 462 ~eAl~d~~kAie 473 (721)
.+++..+-+.+.
T Consensus 18 ~~~~~~L~~~L~ 29 (211)
T 3ltm_A 18 PEKVEMYIKNLQ 29 (211)
T ss_dssp GGGHHHHHHHTT
T ss_pred HhHHHHHHHHHc
Confidence 444444444443
No 313
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=36.25 E-value=21 Score=36.70 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (721)
Q Consensus 250 i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (721)
++.+++..++.+|++++++.|++.|.+|+.+.+.
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999998764
No 314
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=35.94 E-value=44 Score=28.39 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 380 lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
+++++.+...++-....|+|++|+.+|..||+.
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345566666777778889999999999988765
No 315
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=32.93 E-value=32 Score=29.11 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=28.9
Q ss_pred CHhhHHHHHHHhcccCChhHHHHHHHHHHhhc
Q 004984 284 SREDAVELMGYAIEENSPVLAVSCLQVFLREL 315 (721)
Q Consensus 284 ~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~ 315 (721)
+.+++..++..|..+..+.|.+.|.+++.+++
T Consensus 78 ~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 78 EADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 46899999999999999999999999987753
No 316
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=31.21 E-value=7.6e+02 Score=29.66 Aligned_cols=263 Identities=13% Similarity=0.034 Sum_probs=121.1
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcC-CC----cHHHHHHHhhcC--ChhHHHHHHHHHHhcCCC------C----h
Q 004984 417 SIAGLARLGYIKGHKLWAYEKLNSVISSV-TP----LGWMYQERSLYC--EGDKRWEDLDKATALDPT------L----S 479 (721)
Q Consensus 417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~-~~----~~~ay~~rg~~~--~~~eAl~d~~kAieLdP~------~----~ 479 (721)
|.+.+|.++ .|+.++++..+.+-+... .+ .+-+.+..|..+ ..+++++.+...+.-+.. . .
T Consensus 378 A~aSLGlIh--~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 378 ATASLGVIH--KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHHHHHHT--SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred HHHHhhhhc--cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHH
Confidence 344455433 355555555554443311 01 244444455432 224555555554443220 0 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-L--ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~--~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~ 556 (721)
.+-..+|.+++..++ +++++.+...|.-+.. . .+....|.++...|+-+....-.+.+.+-..+. ..|.++..
T Consensus 456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~---vrR~aalg 531 (963)
T 4ady_A 456 GASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN---ITRGLAVG 531 (963)
T ss_dssp HHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH---HHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH---HHHHHHHH
Confidence 344567777776664 5677777777753322 1 223445666777776654444444444322211 11222221
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH----HHHHHHcCChHHHHH-HHHHHH
Q 004984 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ----SLLLLRLNCPEAAMR-SLQLAR 631 (721)
Q Consensus 557 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~----g~~L~~lg~~eeAl~-~~~~Al 631 (721)
++.+ ...+.+.+ ..+-+.|..+ .++..++.- |.++...|... |++ .+..+.
T Consensus 532 -LGll--~~g~~e~~-------------------~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~-aIq~LL~~~~ 587 (963)
T 4ady_A 532 -LALI--NYGRQELA-------------------DDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNS-AVKRLLHVAV 587 (963)
T ss_dssp -HHHH--TTTCGGGG-------------------HHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHH-HHHHHHHHHH
T ss_pred -HHhh--hCCChHHH-------------------HHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHhc
Confidence 1211 11222222 2233333333 234444432 33344677776 444 666666
Q ss_pred HhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCc-hhhHHHHHHHhhcCCCCccc
Q 004984 632 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSC-SSTVVSLLEDALKCPSDRLR 710 (721)
Q Consensus 632 ~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 710 (721)
.-..++....-..|..+...|+-+.+.+..+. +.-.-+...=+.=++||+= ++++. ...||++|+..++=+.+..|
T Consensus 588 ~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~-L~~~~d~~VR~gAalALGl--i~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFVLLRDYTTVPRIVQL-LSKSHNAHVRCGTAFALGI--ACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTT-GGGCSCHHHHHHHHHHHHH--HTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred cCCcHHHHHHHHHHHHhhccCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH--hccCCCcHHHHHHHHHHccCCCHHHH
Confidence 54444444444555555555554332222211 1112222233333444443 33433 36788888888887777777
Q ss_pred cc
Q 004984 711 KG 712 (721)
Q Consensus 711 ~~ 712 (721)
.|
T Consensus 665 q~ 666 (963)
T 4ady_A 665 QA 666 (963)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 317
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.16 E-value=1.5e+02 Score=28.99 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=63.5
Q ss_pred hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCC------
Q 004984 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL--YDTSHCEEGLRKAEESIQMKRS------ 670 (721)
Q Consensus 599 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L--y~~G~~deAl~~ye~Ai~i~~~------ 670 (721)
.||+....|...+... ..+...++...|....+..=...-|++|.+|+. -..|++.+|-..|++.|+-+.-
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 4555555665555544 122255789999999998888888999998875 4569999999999999986432
Q ss_pred --HHHHHHHHHHhhccCC--CCCchhhHHHHHHHh
Q 004984 671 --FEAFFLKAYALADSSQ--DSSCSSTVVSLLEDA 701 (721)
Q Consensus 671 --~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 701 (721)
+..|-.| +..+++ |-..-..+-..++..
T Consensus 154 ~~~~~F~~R---~~~~~~~~~~~~~~~~~~~~~~~ 185 (202)
T 3esl_A 154 RSLSNYEDR---LREMNIVENQNSVPDSRERLKGR 185 (202)
T ss_dssp HHHHHHHHH---HHHTTCCCC----CHHHHHHHHH
T ss_pred HHHHHHHHH---HHhcCCCCCCCccccHHHHhccc
Confidence 2233333 455555 544444444455555
No 318
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=26.98 E-value=72 Score=34.07 Aligned_cols=42 Identities=29% Similarity=0.264 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhc-------cchhhHhhHHHHHHHhCCHHHHHHHHHHHH
Q 004984 401 EAEHLFEAAVNA-------GHIYSIAGLARLGYIKGHKLWAYEKLNSVI 442 (721)
Q Consensus 401 eA~~~f~~AL~~-------~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI 442 (721)
.++..|.+||.. .|.|.|.++|..+++.|++.+|++....|-
T Consensus 275 ~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 275 PAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 378888888876 488999999999999999999988765443
No 319
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.59 E-value=1.7e+02 Score=27.47 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHH--------HhcCCHHHHHHHHHHHHhc
Q 004984 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWIL--------YDTSHCEEGLRKAEESIQM 667 (721)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~L--------y~~G~~deAl~~ye~Ai~i 667 (721)
+..|..++..|++=+|-+.++.+..-.|.. .+..+..|+|. +..|+...|...+++|+..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 557778888899999999999999887664 35667777777 6779999999999999883
No 320
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.84 E-value=1.1e+02 Score=33.38 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=23.0
Q ss_pred HHHHHHHHHhc-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984 464 RWEDLDKATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (721)
Q Consensus 464 Al~d~~kAieL-----dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kA 505 (721)
+++-|++||.. +-.+.++|.++|..+.+.++|.+|+..+-.|
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhh
Confidence 34445555542 3344566666666666666666666655554
No 321
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.57 E-value=76 Score=34.48 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhc-------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 004984 401 EAEHLFEAAVNA-------GHIYSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (721)
Q Consensus 401 eA~~~f~~AL~~-------~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~ 443 (721)
.++..|++||.. .|.|.|.++|..+++.+++.+|++.+..+-.
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 466788888875 4888999999999999999999988876543
No 322
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=25.49 E-value=60 Score=27.88 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984 483 MYRASSLMTKQNVEAALAEINRILGFKLALECL 515 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~ 515 (721)
..+|..+...|++++|+..|-+||..-|+|..+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 458999999999999999999999998887543
No 323
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.21 E-value=3e+02 Score=25.42 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCHH
Q 004984 621 EAAMRSLQLARQHAASDHERLVYEGWIL--YDTSHCEEGLRKAEESIQMKRSFE 672 (721)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea~~~~G~~L--y~~G~~deAl~~ye~Ai~i~~~~~ 672 (721)
.++...|....+..=-..-|++|.+|+. -..|++++|-..|++.|+-+.-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4488888888888888888888888874 456999999999999998754433
No 324
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.96 E-value=4e+02 Score=24.89 Aligned_cols=58 Identities=10% Similarity=-0.100 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHHHH--------HHHHhcCCHHHHHHHHHHHHh
Q 004984 483 MYRASSLMTKQNVEAALAEINRILGFKLAL--ECLELRF--------CFFLALEDYQAALCDVQAILT 540 (721)
Q Consensus 483 ~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~--~~~~~R~--------~~~~~lgd~eeAl~d~~kal~ 540 (721)
...|..+...|+|=+|-+.++.+..-.+.+ +.-..+| ..+...|+...|.+.+++++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 446778888899999999999999876543 3222222 346789999999999999988
No 325
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.78 E-value=6.9e+02 Score=26.72 Aligned_cols=99 Identities=10% Similarity=0.038 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCchhhhhhHH
Q 004984 482 YMYRASSLMTKQNVEAALAEINRILG----FKLAL---ECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVA 553 (721)
Q Consensus 482 y~~rg~~l~~lg~~~eAl~~~~kAL~----l~P~~---~~~~~R~~~~~~lgd~eeAl~d~~kal~-L~P~~~~~~~~~~ 553 (721)
...++.++.+.|++.+|...+..... ..+.. +.+.....++...||+..|...++++.. ..+.+..-..+..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 45789999999999999998888652 22222 2223344689999999999999999853 2222211122334
Q ss_pred HHHHHHHHHHhhhhhh-HHHHHHhhhhc
Q 004984 554 ASQLHMLVREHIDNWT-IADCWLQLYDR 580 (721)
Q Consensus 554 a~~~~~~l~~~~~~~~-~A~~~~~l~~~ 580 (721)
.....+.+..+.++|. .+.++..+++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4444455544444444 44444444444
No 326
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=23.57 E-value=5.8e+02 Score=25.73 Aligned_cols=190 Identities=16% Similarity=0.157 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhC--CCchhhhhhHHH
Q 004984 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFF-LALEDYQAALCDVQAILTLS--PDYRMFEGRVAA 554 (721)
Q Consensus 480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~--~~~~~~R~~~~-~~lgd~eeAl~d~~kal~L~--P~~~~~~~~~~a 554 (721)
.-...+|.+.-+.+||++.+....++++.++. .+--+++..+| ...|..-.+.+-+.-+.+-. .++... ...+
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~--~~~i 109 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDK--LKMI 109 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH--HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHH--HHHH
Confidence 45567788888999999999999999998875 44333333332 22233333333332222111 111000 0011
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH----HHHHHHHHHH-----c-----CCh
Q 004984 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL----YFRQSLLLLR-----L-----NCP 620 (721)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~----~~~~g~~L~~-----l-----g~~ 620 (721)
...+..+...+...-.- + +..++.-|--...+++. +-.+|..+-- . .-.
T Consensus 110 ~~yr~kIe~EL~~iC~d---------------i--l~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~ 172 (261)
T 3ubw_A 110 REYRQMVETELKLICCD---------------I--LDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAA 172 (261)
T ss_dssp HHHHHHHHHHHHHHHHH---------------H--HHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------------H--HHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHH
Confidence 11122222222111111 1 33333333322222222 1123333221 1 123
Q ss_pred HHHHHHHHHHHH-----hCCCChhHHHHHHHH------HHh-cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCC
Q 004984 621 EAAMRSLQLARQ-----HAASDHERLVYEGWI------LYD-TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 688 (721)
Q Consensus 621 eeAl~~~~~Al~-----l~P~~~ea~~~~G~~------Ly~-~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~ 688 (721)
+.|+..|+.|.+ +.|.++-. +|++ +|. +++.++|.....+|+ -.|++--|+ |+-
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPir---LGLaLNfSVFyYEIln~p~~Ac~LAk~AF----------d~Ai~eLd~-L~e 238 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIR---LGLALNFSVFYYEILNSPDRACRLAKAAF----------DDAIAELDT-LSE 238 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHH---HHHHHHHHHHHHHTSCCHHHHHHHHHHHH----------HHHHHTGGG-CCT
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHHhhc-cCh
Confidence 567778877764 67888743 4444 333 699999999888864 355665565 444
Q ss_pred Cc---hhhHHHHHHHhh
Q 004984 689 SC---SSTVVSLLEDAL 702 (721)
Q Consensus 689 ~~---~~~~~~~~~~~~ 702 (721)
++ |..++|||-|=|
T Consensus 239 esykDstlImQLLRDNL 255 (261)
T 3ubw_A 239 ESYKDSTLIMQLLRDNL 255 (261)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 44 788899997754
No 327
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=23.47 E-value=89 Score=26.07 Aligned_cols=26 Identities=8% Similarity=0.065 Sum_probs=17.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc
Q 004984 387 HQLGCVRLLRKEYDEAEHLFEAAVNA 412 (721)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (721)
...++-....|+|++|+.+|..||+.
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444456677888888888877664
No 328
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.18 E-value=2e+02 Score=31.34 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhc---cchHHHHHHHHHHHhc-------cchhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 004984 384 LAFHQLGCVRLLR---KEYDEAEHLFEAAVNA-------GHIYSIAGLARLGYIKGHKLWAYEKLNSV 441 (721)
Q Consensus 384 la~~~lG~~~~~~---g~y~eA~~~f~~AL~~-------~~~~A~~~lg~~~~~~G~~~~A~~~~~~a 441 (721)
+++-+||..-... |+. .++..|.+||.. .|.|.|.++|..+++.|++.+|++....|
T Consensus 278 mALgnLgDLEe~~pt~gr~-~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 278 MALGNLADLEELEPTPGRP-DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp HHHHHHHHHHHHSCCTTCC-CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcchhhHhhcCCCCCCC-CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHH
Confidence 4555555543322 222 377889998876 48999999999999999999998776544
No 329
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=22.74 E-value=1.1e+02 Score=29.58 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccchh
Q 004984 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY 416 (721)
Q Consensus 384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~ 416 (721)
.-.|.+|..++..++|.+|.+++..|++.-|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 344788888888888999988888888874443
No 330
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.54 E-value=6.2e+02 Score=25.30 Aligned_cols=189 Identities=12% Similarity=0.101 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCC--CchhhhhhHHHH
Q 004984 481 PYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFF-LALEDYQAALCDVQAILTLSP--DYRMFEGRVAAS 555 (721)
Q Consensus 481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~--~~~~~~R~~~~-~~lgd~eeAl~d~~kal~L~P--~~~~~~~~~~a~ 555 (721)
-..++|.+.-+.+||++.+....++++.++. .+--+++..+| ...|..-.+.+-+.-+.+-.. ++... ...+.
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~--~~~i~ 83 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKK--IEMVR 83 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC---HHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHH--HHHHH
Confidence 3567788888999999999999999998875 44333333332 222333333333322222110 11000 01111
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh------hHHHHHHHHHHH----------cCC
Q 004984 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG------VLYFRQSLLLLR----------LNC 619 (721)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~------~~~~~~g~~L~~----------lg~ 619 (721)
..+..+...+...-.- + +..++.-|--...++ -++-.+|..+-- ..-
T Consensus 84 ~yr~kie~EL~~iC~d---------------i--l~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~ 146 (248)
T 3uzd_A 84 AYREKIEKELEAVCQD---------------V--LSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATV 146 (248)
T ss_dssp HHHHHHHHHHHHHHHH---------------H--HHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---------------H--HHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHH
Confidence 1122222222111111 0 333333332222222 112233433322 122
Q ss_pred hHHHHHHHHHHHH-----hCCCChhHHHHHHHH------HHh-cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCC
Q 004984 620 PEAAMRSLQLARQ-----HAASDHERLVYEGWI------LYD-TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD 687 (721)
Q Consensus 620 ~eeAl~~~~~Al~-----l~P~~~ea~~~~G~~------Ly~-~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~ 687 (721)
.+.|+..|+.|.. +.|.++-. +|++ +|. +++.++|.....+|+ -.|++--|+ |+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPir---LGLaLNfSVFyYEIln~~~~Ac~lAk~Af----------d~Ai~eld~-l~ 212 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIR---LGLALNYSVFYYEIQNAPEQACHLAKTAF----------DDAIAELDT-LN 212 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHH---HHHHHHHHHHHHHTSCCHHHHHHHHHHHH----------HHHHHTGGG-CC
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHHhhc-CC
Confidence 3567778877764 77888743 4444 233 799999999888863 355665555 44
Q ss_pred CCc---hhhHHHHHHHhh
Q 004984 688 SSC---SSTVVSLLEDAL 702 (721)
Q Consensus 688 ~~~---~~~~~~~~~~~~ 702 (721)
-++ |..++|||-|=|
T Consensus 213 eesykDstlImqLLRDNL 230 (248)
T 3uzd_A 213 EDSYKDSTLIMQLLRDNL 230 (248)
T ss_dssp TTTHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 444 788999998755
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.20 E-value=9e+02 Score=28.72 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=72.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHHH
Q 004984 485 RASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLVR 562 (721)
Q Consensus 485 rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~-L~P~~~~~~~~~~a~~~~~~l~ 562 (721)
+...++..|+++-|. ..+..-|. +-.-+.+|.++...|++++|...|++|-. +.++..... ......+.+
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~---~~~~~~~ll- 887 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA---VLREFQEIA- 887 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG---GGHHHHHHH-
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc---chhhhhhcc-
Confidence 667778888887543 24455553 44458899999999999999999999864 222211000 000000000
Q ss_pred HhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 004984 563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (721)
Q Consensus 563 ~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e 639 (721)
-..+.....+.+|.....++...|.++-+++..+.|++....+-+
T Consensus 888 --------------------------------~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 888 --------------------------------EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp --------------------------------HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred --------------------------------CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 001111112347888888999999999999999999986654433
No 332
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.12 E-value=2.5e+02 Score=27.77 Aligned_cols=98 Identities=15% Similarity=0.008 Sum_probs=58.5
Q ss_pred hhHHHHHHHhhhcCCCC---chhHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchh
Q 004984 345 FSLYCLLSEVAMNLDPR---SDKTVCFLERLLESAET---DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIY 416 (721)
Q Consensus 345 ~~~~~~l~wV~~d~~~r---s~~~~~LLe~Lv~~a~~---~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~ 416 (721)
.++.-.++|+.-..... ......+||++++-..+ +..+. -|-.+=.-|.. .-+++...|.-.... |...
T Consensus 73 ~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~-RyLklWl~Ya~--~~~~p~~if~~L~~~~IG~~~ 149 (223)
T 4aez_C 73 QVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDV-RYLRIWMQYVN--YIDEPVELFSFLAHHHIGQES 149 (223)
T ss_dssp HHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCH-HHHHHHHHHHT--TCSCHHHHHHHHHHTTCSTTB
T ss_pred HHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCH-HHHHHHHHHHH--ccCCHHHHHHHHHHCCcchhH
Confidence 34556788887665422 23577999997753311 11111 11111112222 124666777765544 5544
Q ss_pred h--HhhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 004984 417 S--IAGLARLGYIKGHKLWAYEKLNSVISSV 445 (721)
Q Consensus 417 A--~~~lg~~~~~~G~~~~A~~~~~~aI~~~ 445 (721)
| |...|..+...|++.+|.+.|...|+..
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4 4456778999999999999999999865
No 333
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.07 E-value=2e+02 Score=26.96 Aligned_cols=95 Identities=17% Similarity=0.080 Sum_probs=56.6
Q ss_pred hhHHHHHHHhhhcCCC--CchhHHHHHHHHHHhhh---HHHHH---HHHHHHHHHHHHhccchHHHHHHHHHHHhc--cc
Q 004984 345 FSLYCLLSEVAMNLDP--RSDKTVCFLERLLESAE---TDRQR---LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GH 414 (721)
Q Consensus 345 ~~~~~~l~wV~~d~~~--rs~~~~~LLe~Lv~~a~---~~lq~---~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~ 414 (721)
.+..-.++|+.-.... .......+||++++-.. .+..+ ...+...+. . .+++...|...... |.
T Consensus 20 ~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~--~----~~~p~~if~~L~~~~IG~ 93 (164)
T 2wvi_A 20 DVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGR--L----CNEPLDMYSYLHNQGIGV 93 (164)
T ss_dssp HHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHH--H----CSCHHHHHHHHHHTTSST
T ss_pred HHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHH--h----cCCHHHHHHHHHHCCcch
Confidence 3455678888665432 23467789999775331 11111 111211111 1 24466677765544 54
Q ss_pred hhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 004984 415 IYS--IAGLARLGYIKGHKLWAYEKLNSVISSV 445 (721)
Q Consensus 415 ~~A--~~~lg~~~~~~G~~~~A~~~~~~aI~~~ 445 (721)
..| |..-|..+...|++.+|-+.|..+|+..
T Consensus 94 ~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444 4556778899999999999999999875
No 334
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=20.80 E-value=46 Score=29.73 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=30.4
Q ss_pred CHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc
Q 004984 284 SREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317 (721)
Q Consensus 284 ~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~ 317 (721)
+.+|+..++..|..+..+.|.+.|.+++.+++..
T Consensus 102 ~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 102 SKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp CTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999877653
No 335
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.25 E-value=6.2e+02 Score=24.85 Aligned_cols=78 Identities=8% Similarity=0.094 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCCChhHHHHH----HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH--HhcCCHHHHHHHHHH
Q 004984 590 LSVIYQMLESDAPKGVLYFRQ----SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL--YDTSHCEEGLRKAEE 663 (721)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~----g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L--y~~G~~deAl~~ye~ 663 (721)
+.++++++..--.+..+++.- =-+.. .....++...|....+..=-..-|++|.+|+. -..|++.+|-..|++
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Y-a~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQY-VNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHH-HTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHH-HHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 557888887755555443211 11111 12235688999999999988889999999984 457999999999999
Q ss_pred HHhcC
Q 004984 664 SIQMK 668 (721)
Q Consensus 664 Ai~i~ 668 (721)
.|+-+
T Consensus 176 Gi~~~ 180 (223)
T 4aez_C 176 GKRMK 180 (223)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 99964
No 336
>3j0g_M E3 protein; alphavirus, bioweapon, VEEV; 4.80A {Venezuelan equine encephalitis virus}
Probab=20.02 E-value=45 Score=25.89 Aligned_cols=14 Identities=50% Similarity=0.902 Sum_probs=11.5
Q ss_pred HHHHHHhhcCCCCc
Q 004984 695 VSLLEDALKCPSDR 708 (721)
Q Consensus 695 ~~~~~~~~~~~~~~ 708 (721)
-+|||-+|+|||-+
T Consensus 44 ~~LL~a~l~C~~rr 57 (59)
T 3j0g_M 44 DELLEAAVKCPGRK 57 (59)
T ss_dssp HHHHHHHHSCCSSS
T ss_pred HHHHHHHhcCcccc
Confidence 57999999999654
Done!