Query 004985
Match_columns 721
No_of_seqs 162 out of 234
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 16:10:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2215 Exocyst complex subuni 100.0 1.5E-63 3.3E-68 563.2 30.6 652 25-703 4-673 (673)
2 KOG2346 Uncharacterized conser 100.0 9.9E-28 2.1E-32 258.2 18.7 308 27-388 25-343 (636)
3 PF04124 Dor1: Dor1-like famil 99.8 1.9E-18 4.1E-23 188.3 28.2 314 46-379 6-336 (338)
4 PF08700 Vps51: Vps51/Vps67; 99.7 6.8E-16 1.5E-20 135.5 12.2 85 30-114 1-86 (87)
5 KOG2069 Golgi transport comple 99.7 3.4E-13 7.3E-18 150.3 36.3 340 31-395 17-376 (581)
6 KOG2215 Exocyst complex subuni 99.6 1E-14 2.3E-19 167.0 20.2 326 143-511 282-633 (673)
7 PF15469 Sec5: Exocyst complex 99.1 4.9E-10 1.1E-14 111.8 13.3 171 68-247 2-181 (182)
8 KOG2347 Sec5 subunit of exocys 98.9 1.5E-05 3.4E-10 93.1 38.3 602 30-683 166-884 (934)
9 PF06248 Zw10: Centromere/kine 98.8 0.0011 2.5E-08 78.0 49.3 441 48-510 8-532 (593)
10 PF04100 Vps53_N: Vps53-like, 98.5 0.00019 4.1E-09 80.0 32.4 339 33-392 2-383 (383)
11 PF10191 COG7: Golgi complex c 98.5 0.00028 6.1E-09 85.2 34.5 408 26-463 1-442 (766)
12 PF10475 DUF2450: Protein of u 98.5 3E-05 6.6E-10 83.2 22.8 218 30-259 8-235 (291)
13 KOG2033 Low density lipoprotei 98.1 0.0036 7.7E-08 72.2 29.9 271 42-324 11-310 (863)
14 KOG2180 Late Golgi protein sor 97.7 0.078 1.7E-06 62.0 31.4 410 25-464 9-465 (793)
15 PF06148 COG2: COG (conserved 97.2 0.00019 4.1E-09 68.3 2.5 88 27-116 5-92 (133)
16 PF10392 COG5: Golgi transport 97.0 0.0062 1.3E-07 57.9 11.2 89 29-117 2-96 (132)
17 KOG2307 Low density lipoprotei 96.3 2.2 4.8E-05 49.1 26.1 104 5-112 4-108 (705)
18 PF04437 RINT1_TIP1: RINT-1 / 96.2 3.6 7.8E-05 47.7 30.4 367 276-680 31-430 (494)
19 KOG4182 Uncharacterized conser 93.3 18 0.00039 41.3 29.8 410 27-460 3-499 (828)
20 PF04048 Sec8_exocyst: Sec8 ex 92.5 1 2.3E-05 43.4 10.1 81 29-109 15-102 (142)
21 KOG3691 Exocyst complex subuni 91.9 1.8 3.8E-05 52.2 12.7 157 46-216 42-206 (982)
22 PF04091 Sec15: Exocyst comple 85.8 26 0.00057 38.2 15.7 124 546-690 143-278 (311)
23 PF03081 Exo70: Exo70 exocyst 85.2 22 0.00047 39.3 15.2 85 410-503 140-236 (371)
24 PF06046 Sec6: Exocyst complex 73.9 1.2E+02 0.0025 35.8 17.0 383 241-678 79-476 (566)
25 KOG2176 Exocyst complex, subun 73.1 2.3E+02 0.005 34.7 48.3 126 51-180 45-172 (800)
26 KOG2344 Exocyst component prot 64.6 3.2E+02 0.0069 33.0 18.8 45 219-263 190-234 (623)
27 KOG4572 Predicted DNA-binding 56.6 4.7E+02 0.01 32.3 18.5 198 71-324 348-545 (1424)
28 COG2959 HemX Uncharacterized e 50.4 4.1E+02 0.009 29.9 16.0 116 51-201 64-184 (391)
29 PF04420 CHD5: CHD5-like prote 49.1 49 0.0011 32.6 6.6 62 50-115 40-102 (161)
30 PF15290 Syntaphilin: Golgi-lo 48.1 76 0.0017 34.0 8.0 48 35-83 54-107 (305)
31 KOG2604 Subunit of cis-Golgi t 46.0 6.3E+02 0.014 30.7 28.6 184 149-352 189-401 (733)
32 PF07393 Sec10: Exocyst comple 42.5 7.1E+02 0.015 30.3 41.8 181 165-352 75-274 (710)
33 PF01031 Dynamin_M: Dynamin ce 41.1 2.3E+02 0.005 30.3 10.9 77 313-395 194-275 (295)
34 PF06419 COG6: Conserved oligo 40.8 7.2E+02 0.016 29.9 41.9 76 221-296 190-279 (618)
35 COG2882 FliJ Flagellar biosynt 40.4 1.8E+02 0.0039 28.5 8.7 31 75-111 66-96 (148)
36 cd02680 MIT_calpain7_2 MIT: do 39.5 1.2E+02 0.0026 26.2 6.6 51 161-217 19-73 (75)
37 smart00762 Cog4 COG4 transport 39.5 1.8E+02 0.004 31.9 9.9 89 203-292 5-101 (324)
38 PF08318 COG4: COG4 transport 37.0 4E+02 0.0087 29.3 12.1 85 203-288 5-97 (331)
39 PF04444 Dioxygenase_N: Catech 34.8 65 0.0014 27.8 4.3 50 198-247 3-56 (74)
40 PF08631 SPO22: Meiosis protei 31.9 5.5E+02 0.012 27.2 11.9 248 158-454 3-252 (278)
41 PRK15321 putative type III sec 31.8 1.2E+02 0.0026 27.5 5.5 55 421-497 19-73 (120)
42 cd02684 MIT_2 MIT: domain cont 26.7 3.6E+02 0.0078 23.0 7.5 52 161-214 19-70 (75)
43 cd02678 MIT_VPS4 MIT: domain c 26.3 3.7E+02 0.008 22.7 7.6 52 161-214 19-70 (75)
44 PF11047 SopD: Salmonella oute 26.0 1.1E+02 0.0025 32.8 5.1 21 546-566 35-58 (319)
45 smart00745 MIT Microtubule Int 25.4 3.9E+02 0.0083 22.4 7.6 44 161-205 21-64 (77)
46 COG3516 Predicted component of 24.5 1E+02 0.0022 30.6 4.1 45 16-63 87-131 (169)
47 PRK15380 pathogenicity island 23.9 77 0.0017 33.5 3.4 58 547-615 36-100 (319)
48 cd02683 MIT_1 MIT: domain cont 23.8 3.9E+02 0.0086 23.0 7.3 41 161-203 19-60 (77)
49 PF13176 TPR_7: Tetratricopept 23.7 91 0.002 22.3 2.9 20 156-175 7-26 (36)
50 PF09730 BicD: Microtubule-ass 23.3 9.9E+02 0.022 29.4 12.9 76 31-107 244-321 (717)
51 PF04305 DUF455: Protein of un 22.9 5.4E+02 0.012 27.4 9.6 125 268-395 68-207 (253)
52 cd02656 MIT MIT: domain contai 22.8 4.5E+02 0.0098 21.9 7.5 52 161-214 19-70 (75)
53 PF04212 MIT: MIT (microtubule 22.7 3.8E+02 0.0082 22.0 6.8 40 161-201 18-57 (69)
54 KOG2163 Centromere/kinetochore 22.5 1.4E+03 0.031 27.6 15.8 76 409-501 432-508 (719)
55 PF13779 DUF4175: Domain of un 22.3 1.4E+03 0.031 28.5 14.3 111 51-184 466-576 (820)
56 cd02681 MIT_calpain7_1 MIT: do 22.0 3E+02 0.0064 23.8 6.1 41 161-203 19-61 (76)
57 PF10516 SHNi-TPR: SHNi-TPR; 20.7 1.7E+02 0.0036 21.9 3.7 26 156-181 9-34 (38)
58 cd02677 MIT_SNX15 MIT: domain 20.5 5.4E+02 0.012 22.0 7.4 53 161-215 19-72 (75)
59 PF10691 DUF2497: Protein of u 20.3 1.6E+02 0.0034 25.4 4.0 34 351-384 30-63 (73)
No 1
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-63 Score=563.17 Aligned_cols=652 Identities=31% Similarity=0.393 Sum_probs=573.8
Q ss_pred hhhcccCCCCCChHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 004985 25 EGLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLST 104 (721)
Q Consensus 25 ~~~~~f~~~~Fdpe~YV~~ll~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLse 104 (721)
++...|..+.|+|+.|+++.....+++|+++|+++..+++++++.|+++||.||.+||++||||++||.||++++|++.+
T Consensus 4 ~~~s~f~~~~~t~~~~i~~~~~~~e~dl~~~~~~~~~l~~as~e~~r~~~~~ny~~fI~~skEi~~le~el~~l~~~l~~ 83 (673)
T KOG2215|consen 4 DDDSSFEDEKITPSSYIPSKSKKKESDLQQLCSELVALNKASAETLRQKVSMNYKAFIRTSKEISDLEMELYQLPKFLIE 83 (673)
T ss_pred CccccCcccccCccccccchhhhhhhhHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhcCcccccccchHHHhHHhhhh
Confidence 45568999999999999999866779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcccccccccc-ccCcccccccccCCCCC-chhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHH--HH
Q 004985 105 QATLIHGLAEGVHIDSLKGSE-SFASKNDLLNLENKEPS-DLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLA--AE 180 (721)
Q Consensus 105 q~~lI~~Ls~~~~l~sl~~~~-d~~~~~~~~~~e~~e~~-~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L--~~ 180 (721)
|.++++++.+|+. .+..... ..+..++....++.... ...+|+.++++.++.+.+.+ .+.|...++-.+... ..
T Consensus 84 Q~~~~~~l~~~~~-~d~~~~~s~~s~sn~~~~~~~~~l~~~~~~~~~~fl~~l~~~~~~~-~dg~l~~~D~~~~~~~q~~ 161 (673)
T KOG2215|consen 84 QNNVIQSLLNGVL-QDLSEDESLESLSNTLLSLEDIHLGDVVKNLVKGFLKNLNTLLFES-VDGALEAFDFEKFLPSQKT 161 (673)
T ss_pred ccchHHHhhcccc-ccccccccccccCCccccccCCchhHHHHHHHHHHHHhhhhhhhcc-chHHHhhcchhhhccchHH
Confidence 9999999999987 2222211 11110110111111122 46789999999999999999 888888776543211 11
Q ss_pred hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhccccc
Q 004985 181 AKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLR 260 (721)
Q Consensus 181 ~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~ir~l~ 260 (721)
+.. ..++ .....+..++.|...|++.+.+...++++...++..++-.|+++|.++.++.+.++.+..++...+...+
T Consensus 162 ~~~--~~~~-~L~~~~~~~~~r~~~l~d~~~~~a~~~~~~~~e~~~a~~~li~l~~~~~~~~i~~~~~~~~~~~~~ea~R 238 (673)
T KOG2215|consen 162 LKT--DFSH-DLNSVKITHDKRKESLTDLSLRLAAQINIKDEESWEAQLNLIRLGYSRMYHNILAQRPTLWVNMLIQAKR 238 (673)
T ss_pred HHH--HHHh-hhhhhhhhhchhhhHHHHHHHHHhhccccchHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHH
Confidence 111 1111 2566788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCC--CcchhhhHHHHHHHHHHHHHHHhHHhcCcccccCccHHHHHH
Q 004985 261 PSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKE--TAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAEC 338 (721)
Q Consensus 261 ~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~~--~~~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~ls~~~ec 338 (721)
+....++..|-..++.+.|+.+..+..+-...|++. ++|...-+.|..++++.|-.+|+.+.+.++..+..++..+.|
T Consensus 239 ~~l~~~~~~~qa~~~~~~~~~~S~A~~e~~~~~~~e~~~s~~~~~~~W~~~~~e~~~~~v~~~~~~~s~~~~~l~~~~~~ 318 (673)
T KOG2215|consen 239 LSLQTSPMERQATFPKLRFSAISWALTESLISFGEENLPSYSDEEVLWLEELVELFKLLVAHNAFKTSLEAIHLRAASAC 318 (673)
T ss_pred HHHhhCccccccccchHHHhcCCcccCcccccccCCCCcccchhhhchhhhhhHHHHHHHHhccchhhHHHHHhhhcccc
Confidence 988888889999999999999999999999999998 889999999999999999999999998887788899999999
Q ss_pred HHHHHHhhhhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCCCccccc-cccccccccchhH
Q 004985 339 VQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQA-SSMALQHRLTTSA 417 (721)
Q Consensus 339 v~ia~~~c~~L~~vGLdl~~lL~~ll~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~~-~~~~~~~~LT~S~ 417 (721)
.+.+..+|..|+.+||-+...|..++. ++++++.++++.......++.-++|...+++.+.+.+ ...+..+..|+++
T Consensus 319 ~~~~~~~~~~Lq~~~lfl~~~ll~~~~--~~~~le~~~r~~~~~~~~l~el~~~~~at~~~l~~~s~~~~a~~~~~~~~~ 396 (673)
T KOG2215|consen 319 LQLALTICKPLQMRELFLLNLLLKIFS--VERALERDFRVAQRRHHQLVELGRWSRSTKRLLFKHSESLSAYRCRDTDEA 396 (673)
T ss_pred hhhhhhhhhhhhHhHhhhhhHHHHHhh--hhhhhhhhHHHHhhhHHHHHHhhhhcccchHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999 8999999999999999999999999988887777765 2345678999999
Q ss_pred HHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccCCccchhhccccHHHHHHHHhhHH
Q 004985 418 HRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANAS 497 (721)
Q Consensus 418 ~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~yv~~l~~al~~~~~~~~~~e~~~~~~v~~a~t~~qq~~ll~Na~ 497 (721)
++|.-++++|.++++++.+.+.++..+..+.+.++.|++.+.+++|++.++.+-.+..+..+++.|++..+|++.|+++.
T Consensus 397 ~r~~~~~~d~~~~l~~~~~~e~~s~~~~~~~q~~~~~ldtl~~~l~~s~~e~~~~~s~~a~iv~~a~~~~~qL~~ig~~l 476 (673)
T KOG2215|consen 397 SRFLQVVQDFSEDLCDILKFEQGSKCLYTSFQVLNKELDTLGRQLPRSYEEQGPARSMVAEIVKRAEHTSEQLTLIGLDL 476 (673)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHcccchhhcCchHHHHHHHHHHhhhhHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999988887778888999999999999999999999
Q ss_pred HHHHhHHHHHhhhhcCCccCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcccchhh
Q 004985 498 LLADELLPRAAMKVSPLNQANYKDDPRRRHSDRQNRNPEQREWKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADM 577 (721)
Q Consensus 498 ~l~d~llp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~fc~~~~~~~i~~~~~~~~~~~~~ 577 (721)
++.++.||+....-.+ ......+...+++++.++ |.++|++.+-.+.++|++-||+++.++++|.+.|.+++++++
T Consensus 477 t~~~~~Llr~~le~s~--~l~~~~E~~~~ald~r~~--~ee~W~~~~L~t~s~Lk~l~ee~~~~gv~~~~~~~~~~e~d~ 552 (673)
T KOG2215|consen 477 TIRDEALLRSKLESSQ--LLEGFKEGIADALDNRNR--EEESWVRYLLQTESALKDLSEELSDLGVIYLRQISHELEGDG 552 (673)
T ss_pred HHHHHhhhhhhHHHhh--hhhcchhhHHHHHHhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHhhhhcccccce
Confidence 9999999999876631 111123334577888777 899999999999999999999999999999999989999999
Q ss_pred hhccCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCcCCCccc
Q 004985 578 YLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEEGPKPLGPLG 657 (721)
Q Consensus 578 y~~~~~~~~~~~~~ps~~fq~lf~~l~~l~~~~~~~~~g~e~~~~~ll~rl~e~v~~~ls~~~~~w~~~e~~~~~~~~~g 657 (721)
|.+ ++||.+|.+.+.++.+++|++.||++..++||++|+||+++|+ |+||-.+++++.|.+|.|
T Consensus 553 ~~n-------------l~~q~v~~~~~~~~~le~d~~l~k~~l~~~lLe~L~e~~~~~l---Q~l~~~~~~~~dP~~~~~ 616 (673)
T KOG2215|consen 553 WLN-------------LSSQLVVSKKQLMHLLEKDLPLGKLELAFQLLELLAETLSIAL---QSLWLKIDDEADPNIFAG 616 (673)
T ss_pred EEe-------------hhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHH---HHHHhhhccccCcchHHH
Confidence 933 7799999999999999999999999999999999999999999 899999999999999999
Q ss_pred hhhhhhhHHHHHHHHhhCCCCchhHHHHHHHHh-----------cCCccCCCchhHH
Q 004985 658 LQQFYLDMKFVICFASQGHYLSRNLHELSMRLY-----------LKPWQHLLLLAWI 703 (721)
Q Consensus 658 lqq~~ldm~f~~~~a~~g~~~s~~~~~~~~~~~-----------~dp~~~l~~d~wf 703 (721)
++|||+||.|.++++.++||+.+..+.+.+-.+ ++|++.+|.++||
T Consensus 617 ~~q~i~~m~~~v~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~v~~~s~l~~~d~f 673 (673)
T KOG2215|consen 617 IRQLILDMELPVCIAAFDRIEGELGSKIMQLNTLRAEAKFDAMGVNPQSDLPVDDVF 673 (673)
T ss_pred HHHHHHHhhhhhhHHHhhhhhHHhhhhhHHHHHHHHHhhcccccCCccccccccccC
Confidence 999999999999999999999998776554333 8999999999998
No 2
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=9.9e-28 Score=258.21 Aligned_cols=308 Identities=16% Similarity=0.145 Sum_probs=255.0
Q ss_pred hcccCCCCCChHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHh-------hHHHHHHH
Q 004985 27 LNLFKSDKFDADVYVKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISD-------LEGELSSI 98 (721)
Q Consensus 27 ~~~f~~~~Fdpe~YV~~ll-~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~-------LE~EM~~L 98 (721)
-..+++++||||.|+.++. +++..+|.+.+.+++...+++++|||+.||+|||+||.|+++|++ ||+||.+|
T Consensus 25 ptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L 104 (636)
T KOG2346|consen 25 PTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGL 104 (636)
T ss_pred ccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhH
Confidence 3478999999999999999 999999999999999999999999999999999999999999994 57788888
Q ss_pred HHHHHHHHHHHHHhhhhccccccccccccCcc-cccccccCCCCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHH
Q 004985 99 RNLLSTQATLIHGLAEGVHIDSLKGSESFASK-NDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHL 177 (721)
Q Consensus 99 ~~lLseq~~lI~~Ls~~~~l~sl~~~~d~~~~-~~~~~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~ 177 (721)
.. .++.|++++++++ .++.++++.+.+ ..+ ++ ..++++++.++|..|..|+..+.|.+|+...-.|...
T Consensus 105 ~~----~ms~i~~~s~~l~-g~L~ekre~I~kLg~~----~~-llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~ 174 (636)
T KOG2346|consen 105 EE----VMSSIQSKSDGLA-GSLFEKRELIKKLGQR----PP-LLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGK 174 (636)
T ss_pred HH----HHHHHhhhhcccc-chhHHhHHHHHHhcCC----cc-chhhhHHHhhhHHHHHHhccccccchhhccccccccc
Confidence 77 7788999999887 667666654332 111 11 4578999999999999999999999999999999999
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHHhc
Q 004985 178 AAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRA-HSLLLNAHYQRYQYSM 256 (721)
Q Consensus 178 L~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A-~~lfL~~rs~~L~~~i 256 (721)
+.+|++-| +++....++++++.+++.+|...+++++...+...+|+.+|..||++..- +..+|.+-...|
T Consensus 175 L~qY~~~p-----sfq~~~~~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~lg~p~del~~~lL~~~eqsL---- 245 (636)
T KOG2346|consen 175 LRQYDGRP-----SFQEDDVPSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQLGVPVDELKAKLLEKLEQSL---- 245 (636)
T ss_pred hhhcCCCC-----cHHHhccchHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhccc----
Confidence 99999876 78999999999999999999999999988888999999999999999876 777777665553
Q ss_pred ccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhHHhcCcccccCccHHHH
Q 004985 257 QSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAA 336 (721)
Q Consensus 257 r~l~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~~~~~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~ls~~~ 336 (721)
+++.+..+-+++|+..+..++..+ ..++.+.....+ ++.+++.+.
T Consensus 246 ---------DvL~~~d~~~s~fv~~l~s~a~t~-------------------------~alv~~~~~~e~-~~~d~S~~v 290 (636)
T KOG2346|consen 246 ---------DVLQIKDEEASTFVEDLDSSADTE-------------------------SALVHPAKIHED-AVRDFSEAV 290 (636)
T ss_pred ---------hhheeecccccccccchhhhhhhh-------------------------hhhhhhhhhhhc-cccchHHHH
Confidence 336666677777887777666655 344444444443 558889888
Q ss_pred HHHHHHHHhh-hhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 004985 337 ECVQIALGHC-SLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAA 388 (721)
Q Consensus 337 ecv~ia~~~c-~~L~~vGLdl~~lL~~ll~p~ve~al~~~~~~i~e~i~~~~~ 388 (721)
.+.+..+.-. ..+--.|++|.+.+.+++.....+-+..++.||.+.++....
T Consensus 291 RAldr~fr~s~~r~~~~a~~l~~~~~el~~~v~~~e~~l~l~ri~~~f~~~L~ 343 (636)
T KOG2346|consen 291 RALDRIFRDSEERLFKLARALTAMLPELLLSVLLRECFLILNRIYQDFRQLLD 343 (636)
T ss_pred HHHHHHcccccchHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777632 334457899999999999999998889999999888776543
No 3
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=99.83 E-value=1.9e-18 Score=188.25 Aligned_cols=314 Identities=18% Similarity=0.197 Sum_probs=253.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 004985 46 SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSE 125 (721)
Q Consensus 46 ~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~lI~~Ls~~~~l~sl~~~~ 125 (721)
+.+.+++......|...+..+..+++...++||..||++++....+..++.++++.+......+..|.+.+. .+..+.
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~--~f~~~~ 83 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQ--RFSSKA 83 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 678889999999999999999999999999999999999999999999999999999888888888866553 221111
Q ss_pred ccCcccccc---cccCCCCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q 004985 126 SFASKNDLL---NLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDR 202 (721)
Q Consensus 126 d~~~~~~~~---~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er 202 (721)
+....+... ..+ -.+.+.-+.|+|.-+|.||..++|++|+++...+++....+++.+ .++.+..+++.-
T Consensus 84 ~~~~~~r~~~~~~l~---~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~-----lv~~i~~ev~~~ 155 (338)
T PF04124_consen 84 QKISEERKKASLLLE---NHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIP-----LVKSIAQEVEAA 155 (338)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCch-----hHHHHHHHHHHH
Confidence 110000000 000 013466789999999999999999999999999999888887754 588899999999
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHHHhcccccccccccccchHHhhHHHHHH
Q 004985 203 RQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRA--HSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFS 280 (721)
Q Consensus 203 ~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A--~~lfL~~rs~~L~~~ir~l~~eg~~~~~~YI~~LS~~fFs 280 (721)
...+...|...|..| +.-+.+.+.|++|.|++..+.+ +..||.+|...++..+..+... ++..|++++..+|-.
T Consensus 156 ~~~ml~~Li~~L~~~-l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~~~---~~~~~lkr~iei~R~ 231 (338)
T PF04124_consen 156 LQQMLSQLINQLRTP-LKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEIDKS---DPYRYLKRYIEIYRE 231 (338)
T ss_pred HHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHhhh---hHHHHHHHHHHHHHH
Confidence 999999999999877 8899999999999999987655 8999999999999988888543 347999999999999
Q ss_pred HHHHHHHHHHHhcCCCCc-----------chhhhHHHHHHHHHHHHHHHhHHhcCcccccCccH-HHHHHHHHHHHhhhh
Q 004985 281 AIAQAACDSLAIFGKETA-----------YTSELVMWATRQTEAFAHLVKRHALASSAAAGGLR-AAAECVQIALGHCSL 348 (721)
Q Consensus 281 ~I~~t~~~f~~~F~~~~~-----------~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~ls-~~~ecv~ia~~~c~~ 348 (721)
.+.+++..|.++|+++.. ..+.+..|+.+.+..|...+++++-.. .+..+. ++.+| .-.|..
T Consensus 232 ~~fdiitqY~aIF~~e~~~~~~~~~~~~~~~~~l~sw~~~~v~~~l~~L~~~L~~~--~~~~~~sll~q~----~y~~~S 305 (338)
T PF04124_consen 232 HLFDIITQYRAIFPDESSTSVSLQDRPKFIPSELFSWALHRVSSFLETLEMYLPRV--DESSRESLLTQL----MYFASS 305 (338)
T ss_pred HHHHHHHHHHHHcCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHhhcc--ccchHHHHHHHH----HHHHHh
Confidence 999999999999993211 236788899999999999999997433 112222 33355 223477
Q ss_pred hhhcCCCchHHHHHhhhHHHHHHHHHHHHHH
Q 004985 349 LEARGLALCPVLIKLFRPSVEQALDANLKRI 379 (721)
Q Consensus 349 L~~vGLdl~~lL~~ll~p~ve~al~~~~~~i 379 (721)
|..+|.||++++...|...+.+.+..+....
T Consensus 306 ~~r~g~DF~~ll~~~~~~~~~~~f~~~~~~a 336 (338)
T PF04124_consen 306 FGRVGADFRPLLAPLFERAVLNLFETSVSTA 336 (338)
T ss_pred cCccCCChHHHhHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999998888777654
No 4
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=99.66 E-value=6.8e-16 Score=135.50 Aligned_cols=85 Identities=46% Similarity=0.620 Sum_probs=82.4
Q ss_pred cCCCCCChHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 004985 30 FKSDKFDADVYVKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATL 108 (721)
Q Consensus 30 f~~~~Fdpe~YV~~ll-~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~l 108 (721)
|++++|||+.|+++++ ..+.++|++++.+|...++..+++||++||+||+.||.||+||+.|+++|.+|+++|+++...
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~ 80 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQS 80 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 004985 109 IHGLAE 114 (721)
Q Consensus 109 I~~Ls~ 114 (721)
++.+++
T Consensus 81 ~~~l~~ 86 (87)
T PF08700_consen 81 IQSLQE 86 (87)
T ss_pred HHHhhc
Confidence 998854
No 5
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.4e-13 Score=150.30 Aligned_cols=340 Identities=16% Similarity=0.187 Sum_probs=261.4
Q ss_pred CCCCCChHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 004985 31 KSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIH 110 (721)
Q Consensus 31 ~~~~Fdpe~YV~~ll~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~lI~ 110 (721)
.+++|+ .||.++..++.+++++.+..|...+...+..++.....||..||++++-+...=.+....++.+-+.--...
T Consensus 17 ~~~~~~--~~v~~l~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~ 94 (581)
T KOG2069|consen 17 NSPEMD--AYVRELTTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLP 94 (581)
T ss_pred cCchhH--HHHHHHcCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhH
Confidence 556665 799999888899999999999999999999999999999999999887777555555554444443333334
Q ss_pred Hhhhhcc-----ccccccccccCcccccccccCCCCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHHhhccC
Q 004985 111 GLAEGVH-----IDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTK 185 (721)
Q Consensus 111 ~Ls~~~~-----l~sl~~~~d~~~~~~~~~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~ 185 (721)
.|..++. ...+.+.+.-. .. . ..-...+.-+.++|+.+|.||..++|++|.++..-+-+.-...+..
T Consensus 95 ~L~s~~~~f~~~~~~i~e~~~~~---~~-~---l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~- 166 (581)
T KOG2069|consen 95 ELTSPCKRFQDFAEEISEHRRLN---SL-T---LDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTI- 166 (581)
T ss_pred HhhhHHHHHHHHHHHhhHhHHHH---HH-H---HhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccc-
Confidence 4433332 00111111100 00 0 0011235568999999999999999999999987766555544443
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHHHhcccccccc
Q 004985 186 TLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRA--HSLLLNAHYQRYQYSMQSLRPSS 263 (721)
Q Consensus 186 ~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A--~~lfL~~rs~~L~~~ir~l~~eg 263 (721)
+ .++.+...+.+-+..+.++|.+.++. .....++.+.+.+|.+.+....+ +--||.+|..++.+.+..+...
T Consensus 167 ---p-vi~~i~~~v~~tv~~ll~qL~~~l~~-pl~l~~cirvv~ylr~~~~~t~~~LRl~fl~~rd~~l~k~l~~I~~~- 240 (581)
T KOG2069|consen 167 ---P-VIQEIATEVEQTVQKLLEQLIQQLRT-PLQLPECIRVVGYLRRMAVLTENQLRLKFLQARDAWLEKILEDISTN- 240 (581)
T ss_pred ---h-HHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcccc-
Confidence 3 68889999999999999999999975 46788999999999998888766 8899999999999988888532
Q ss_pred cccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCc------------chhhhHHHHHHHHHHHHHHHhHHhcCcccccCc
Q 004985 264 TSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETA------------YTSELVMWATRQTEAFAHLVKRHALASSAAAGG 331 (721)
Q Consensus 264 ~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~~~~------------~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~ 331 (721)
++-.|+++...++-.++..+.-.|+++|++..+ -.+.|..|+...+..|..++.+-+.-.- +.
T Consensus 241 --~~~~~l~~~i~~~r~~lf~~i~qY~aifpe~~~~~n~~~~~~~~~~~~~~~~w~~~~~ss~l~~i~~~~~~~~---~~ 315 (581)
T KOG2069|consen 241 --NPYLYLKKTIEIIRVNLFDIITQYLAVFPEDEGDLNPNGDVRYKNITDLLISWVLSKISSFLQLIEMMLKKGI---ES 315 (581)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccCCCccCchhhhhhhHHHhhccHHHHHHHHHHhhh---ch
Confidence 346999999999999999999999999998632 2378899999999999999996654322 23
Q ss_pred cH-HHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 004985 332 LR-AAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLT 395 (721)
Q Consensus 332 ls-~~~ecv~ia~~~c~~L~~vGLdl~~lL~~ll~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~ 395 (721)
++ ++-+|+..+++.. .+|+||+.++.++|...+.+-...|.....+.+.....+..|...
T Consensus 316 l~~vl~~cmyf~~SF~----rvg~Dfr~~lap~f~~~vl~~F~knvqe~vEkfq~el~~y~~i~~ 376 (581)
T KOG2069|consen 316 LEHVLGQLMYFALSFG----RVGLDFRGLLAPLLECVVLQRFMKNVEEATEKFELELESYYLIQS 376 (581)
T ss_pred HHHHHHHHHHHHHhhc----cccchhcccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Confidence 44 4458877666655 699999999999999999999999999999999888877777755
No 6
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1e-14 Score=166.96 Aligned_cols=326 Identities=17% Similarity=0.152 Sum_probs=247.1
Q ss_pred chhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-C--
Q 004985 143 DLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPS-T-- 219 (721)
Q Consensus 143 ~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s-~-- 219 (721)
....|..+.++.++.++++++|..+..+.-.-.+... .+ -...+-..+..+---|...|...+..+. .
T Consensus 282 ~~~~W~~~~~e~~~~~v~~~~~~~s~~~~~l~~~~~~----~~-----~~~~~~~~Lq~~~lfl~~~ll~~~~~~~~le~ 352 (673)
T KOG2215|consen 282 EEVLWLEELVELFKLLVAHNAFKTSLEAIHLRAASAC----LQ-----LALTICKPLQMRELFLLNLLLKIFSVERALER 352 (673)
T ss_pred hhhchhhhhhHHHHHHHHhccchhhHHHHHhhhcccc----hh-----hhhhhhhhhhHhHhhhhhHHHHHhhhhhhhhh
Confidence 4578999999999999999999999887643221111 00 1233555566666677777777775321 1
Q ss_pred ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004985 220 RGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAY 299 (721)
Q Consensus 220 ~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~ir~l~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~~~~~ 299 (721)
..-..++....|+.||++.+|...||..|+..+ ...+........ ....+++.+...+..+.. |+..+.|
T Consensus 353 ~~r~~~~~~~~l~el~~~~~at~~~l~~~s~~~-~a~~~~~~~~~~--------r~~~~~~d~~~~l~~~~~-~e~~s~~ 422 (673)
T KOG2215|consen 353 DFRVAQRRHHQLVELGRWSRSTKRLLFKHSESL-SAYRCRDTDEAS--------RFLQVVQDFSEDLCDILK-FEQGSKC 422 (673)
T ss_pred hHHHHhhhHHHHHHhhhhcccchHHHHHHHHHH-HHHHhhhhhhhH--------HHHHHHHHHHHHHHHHhh-hccchHH
Confidence 122556667889999999999999999999988 554443222211 145566667777777777 8888888
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHhcCcccccCccHHHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHHHHHH--HHHHHH
Q 004985 300 TSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQA--LDANLK 377 (721)
Q Consensus 300 ~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~ls~~~ecv~ia~~~c~~L~~vGLdl~~lL~~ll~p~ve~a--l~~~~~ 377 (721)
.....+|+..+++.|...+.+++... +.+.+++++|++.+..+|.+|...|+|+.+..+.++|..++.. +..+.+
T Consensus 423 ~~~~~q~~~~~ldtl~~~l~~s~~e~---~~~~s~~a~iv~~a~~~~~qL~~ig~~lt~~~~~Llr~~le~s~~l~~~~E 499 (673)
T KOG2215|consen 423 LYTSFQVLNKELDTLGRQLPRSYEEQ---GPARSMVAEIVKRAEHTSEQLTLIGLDLTIRDEALLRSKLESSQLLEGFKE 499 (673)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhc---CchHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhHHHhhhhhcchh
Confidence 88888888888888888877776433 2558999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHh-cCCceec---CCCCccccc---c--------------ccccccccchhHHHHHHHHHHHHHhhccccc
Q 004985 378 RIEESTAAMAA-ADDWVLT---YPPMGTRQA---S--------------SMALQHRLTTSAHRFNLMVQDFFEDVGPLLS 436 (721)
Q Consensus 378 ~i~e~i~~~~~-~d~W~~~---~~~~~~~~~---~--------------~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~ 436 (721)
-|++++.++.+ ++.|+++ ++.++.+++ + ...+|++|+++.+.|.+.+..+++.+.++..
T Consensus 500 ~~~~ald~r~~~ee~W~~~~L~t~s~Lk~l~ee~~~~gv~~~~~~~~~~e~d~~~nl~~q~v~~~~~~~~~le~d~~l~k 579 (673)
T KOG2215|consen 500 GIADALDNRNREEESWVRYLLQTESALKDLSEELSDLGVIYLRQISHELEGDGWLNLSSQLVVSKKQLMHLLEKDLPLGK 579 (673)
T ss_pred hHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHhhhhcccccceEEehhHHHHHHHHHHHHHHHhhhccch
Confidence 99999999999 9999999 444555543 0 1248999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccCCccchhhccccHHHHHHHHhhHHHHHHhHHHHHhhhh
Q 004985 437 MQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANASLLADELLPRAAMKV 511 (721)
Q Consensus 437 ~~L~~~~~~~l~~lf~~yv~~l~~al~~~~~~~~~~e~~~~~~v~~a~t~~qq~~ll~Na~~l~d~llp~~~~~~ 511 (721)
+.+...+++++.+..-.|++++.-..- ++.++. +.+ ++-.++.+-.+|.+...+
T Consensus 580 ~~l~~~lLe~L~e~~~~~lQ~l~~~~~----~~~dP~---------------~~~--~~~q~i~~m~~~v~~~~~ 633 (673)
T KOG2215|consen 580 LELAFQLLELLAETLSIALQSLWLKID----DEADPN---------------IFA--GIRQLILDMELPVCIAAF 633 (673)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhc----cccCcc---------------hHH--HHHHHHHHhhhhhhHHHh
Confidence 999999999999988888888876643 333221 122 455566666677776655
No 7
>PF15469 Sec5: Exocyst complex component Sec5
Probab=99.14 E-value=4.9e-10 Score=111.85 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=128.2
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHH------HHHHHHHHHHhhhhcc--ccccccccccCcccccccccCC
Q 004985 68 EEMRKSVYANYAAFIRTSKEISDLEGELSSIRNL------LSTQATLIHGLAEGVH--IDSLKGSESFASKNDLLNLENK 139 (721)
Q Consensus 68 sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~l------Lseq~~lI~~Ls~~~~--l~sl~~~~d~~~~~~~~~~e~~ 139 (721)
++||..||+||.+||++.++|..+-.+|..-..- +......|........ ...+.++++.. +.... -.
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~---~~l~~-~l 77 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKA---DKLRN-AL 77 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHH---HHHHH-HH
Confidence 6899999999999999999999999999655432 3333333333322211 01222222211 00000 00
Q ss_pred CCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 004985 140 EPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAK-QTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPS 218 (721)
Q Consensus 140 e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~-~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s 218 (721)
...+..++++++|..|..+|..++|+.||..|.+++.++.++. .. ..+..+..+|+.++..+...|.+.|.++.
T Consensus 78 ~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~-----~vf~~v~~eve~ii~~~r~~l~~~L~~~~ 152 (182)
T PF15469_consen 78 EFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQV-----PVFQKVWSEVEKIIEEFREKLWEKLLSPP 152 (182)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0235678999999999999999999999999999999999885 32 26899999999999999999999999998
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHH
Q 004985 219 TRGAELRAAISALKKLGDGPRAHSLLLNA 247 (721)
Q Consensus 219 ~~~~elr~aV~lL~rLG~~~~A~~lfL~~ 247 (721)
.+..+..+.|..|..||..+.-.-.||.+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~~ 181 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLES 181 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHc
Confidence 88999999999999999988777777654
No 8
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.5e-05 Score=93.11 Aligned_cols=602 Identities=13% Similarity=0.168 Sum_probs=326.0
Q ss_pred cCCCCCChHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHH---------HH
Q 004985 30 FKSDKFDADVYVKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSS---------IR 99 (721)
Q Consensus 30 f~~~~Fdpe~YV~~ll-~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~---------L~ 99 (721)
|.++||+|.=|+...= ..+-++++.--..|....+.=.+.=+..|-.|...||..=+++..++.-+.+ ..
T Consensus 166 l~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~ 245 (934)
T KOG2347|consen 166 LRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTT 245 (934)
T ss_pred cccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHH
Confidence 7899999999998765 5555555543333333333333444566778999999999999988877766 12
Q ss_pred HHHHHHHHHHHHhhhhccccccccccccCcccccccccCCCCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHH
Q 004985 100 NLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAA 179 (721)
Q Consensus 100 ~lLseq~~lI~~Ls~~~~l~sl~~~~d~~~~~~~~~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~ 179 (721)
| |.+++.-..+=++.+- .++..+.+....... -.-...+.++|+.+|...+.-+.-++|+-+|.-|++++....
T Consensus 246 ~-l~n~i~~~~s~ad~iF-~~vl~Rk~~ADstRs----vL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~ 319 (934)
T KOG2347|consen 246 K-LENCIKNSTSRADLIF-EDVLERKDKADSTRS----VLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFG 319 (934)
T ss_pred H-HHHHHHHhhhHHHHHH-HHHHhcccccccHHH----HHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhc
Confidence 2 2222111111111111 122223332110000 000124678999999999999999999999999999998887
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCCh-----------HHHHHHHHHH
Q 004985 180 EAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGP-----------RAHSLLLNAH 248 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~-----------~A~~lfL~~r 248 (721)
...-. .++.+-..++.|+..+...|.+.+..+.++-.+..+.|.+|.-|.-.. +-..-++..+
T Consensus 320 ~t~v~------~Fkk~l~Eve~~m~~~k~~l~~kli~~p~t~~dq~~~ir~L~~L~~~~dP~wq~I~~q~k~i~~L~~s~ 393 (934)
T KOG2347|consen 320 KTEVN------LFKKVLEEVEKRMQSFKETLYRKLIDTPITFEDQSKLIRYLSELEPESDPVWQCIGVQNKRILGLLESC 393 (934)
T ss_pred ccccH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCcccCchhhhccccchHHHhhhhhc
Confidence 54321 588899999999999999999999888888889999999998554321 1112222222
Q ss_pred HHHHHHhccccc---------ccc--------------------------cccccchHHhhHHHHHHHHHHHHHHHHHhc
Q 004985 249 YQRYQYSMQSLR---------PSS--------------------------TSYGGAYTAALSQLVFSAIAQAACDSLAIF 293 (721)
Q Consensus 249 s~~L~~~ir~l~---------~eg--------------------------~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F 293 (721)
.......+..++ ..| +..-.+||.+|+.+..+.+-.-=+--...|
T Consensus 394 ~~~~~~~l~~~~~~~~~~q~s~~g~~~S~t~s~~~~~~~q~~~~~~~~~k~~~r~~fiekL~~l~~s~lP~fWKl~~sy~ 473 (934)
T KOG2347|consen 394 WDDHVARLEGLRLSDKWTQPSQNGVHLSDTASSMENSQNQVINEWKIREKTPERVNFIEKLTDLLLSQLPIFWKLAISYF 473 (934)
T ss_pred chhHHHHhhcccccccccchhhcccccCchHHHHhhhhhhhccchhhhhhchHHHHHHHHHHHHHHHhCcHHHHHHHHHh
Confidence 222222222222 001 122348999999998887754433333444
Q ss_pred CC-----CCcch-hhhH-----HHHHHHHHHHHHHHhHHhc--------Cccc--------cc-CccHHHHHHHHHHHHh
Q 004985 294 GK-----ETAYT-SELV-----MWATRQTEAFAHLVKRHAL--------ASSA--------AA-GGLRAAAECVQIALGH 345 (721)
Q Consensus 294 ~~-----~~~~~-S~LV-----~Wa~~eie~f~~l~~rqv~--------~~~~--------aa-~~ls~~~ecv~ia~~~ 345 (721)
.+ ..-+- |.++ ..+++--+.|..++..-.. ...+ +. ..+.-++.|++.++.-
T Consensus 474 ~G~~~~~~sq~~~s~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t~s~~~~~a~~~~~~~dis~~~~~~~~~~i~~vr~~ 553 (934)
T KOG2347|consen 474 NGDLFSPSSQVQDSDINKMEQNNEVREKREVFHSLVELALMDRFTLSQSDGKAKSPFGDADISRSLLPWMPLAIKTVRKA 553 (934)
T ss_pred cccccCcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCcCCcccccccCccchhHHHHhHHH
Confidence 33 21000 1111 1122222223333322211 0000 00 1123447999999999
Q ss_pred hhhhhhcCCCchHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHhcCCceecCCCCccccccccccc-cccchhH
Q 004985 346 CSLLEARGLALCPVLIKLFRPSVEQALD-------ANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMALQ-HRLTTSA 417 (721)
Q Consensus 346 c~~L~~vGLdl~~lL~~ll~p~ve~al~-------~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~~~~~~~~-~~LT~S~ 417 (721)
|..|..-- ++....++|-.+-..+ .-+++-.|.++.++..+.|.+..---..+.....++. =..+-|+
T Consensus 554 ~~sL~ale----~~P~~~lq~Iq~li~~~rl~~~~~~~~~~~e~is~l~~re~W~~~s~~~rn~s~t~LP~~fEt~ivss 629 (934)
T KOG2347|consen 554 CQSLEALE----SLPHDALQPIQKLITEARLQCLSSWMRASTERISTLAKRETWIPDSILERNRSITYLPLAFETVIVSS 629 (934)
T ss_pred HHHHHHhh----hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcccchhhhhHHHHHHHhhh
Confidence 98887633 2222455555444433 4556678889999999999988211000101000000 0011111
Q ss_pred HHHH-HHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHh------CCCCc-hhhhhccC---Cc--c---chhh
Q 004985 418 HRFN-LMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKA------LPGSM-EEEANFEG---SG--N---KIVR 481 (721)
Q Consensus 418 ~~F~-~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~yv~~l~~a------l~~~~-~~~~~~e~---~~--~---~~v~ 481 (721)
..=+ .++..+=-.++..--|++...+.+.+..+....+..+.+- .+.+. ......++ .+ + ..+.
T Consensus 630 l~q~~~~~l~~~gEa~~f~~~~~~~~i~el~I~~~~~fl~c~e~L~~h~~~~~~~~~q~~t~~~~~~~~~~~~qed~~~n 709 (934)
T KOG2347|consen 630 LEQVNSVLLSFEGEAALFEQPDMQAEIEELSISVRLAFLNCFEDLAIHLEQIGADLSQLTTQIEGQNGFSNAHQEDISIN 709 (934)
T ss_pred HHhhhhHHhhccccccccCchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcccccccccccccccchhhhcc
Confidence 1111 1111111122222223344444444333333222222111 01000 00000000 00 0 0000
Q ss_pred c---cccHHHH-HHHHhhHHHHHHhHHHHHhhhhcCCccCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004985 482 M---AENEAQQ-IALLANASLLADELLPRAAMKVSPLNQANYKDDPRRRHSDRQNRNPEQREWKRRLVISVDRLKDTFCR 557 (721)
Q Consensus 482 ~---a~t~~qq-~~ll~Na~~l~d~llp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~fc~ 557 (721)
- +.+-.|+ +-+|.|.-|.-+.+.|.....+.= ..+ .+.++ .......+.....++..+|-.
T Consensus 710 s~~~~~~~~qrlLi~LsN~~yc~~~~~~~l~n~fk~---------~~~--~~~k~----iE~is~s~s~l~s~l~e~Yi~ 774 (934)
T KOG2347|consen 710 SADSVVDPEQRLLIVLSNIGYCKDILAPTLLNIFKY---------TWL--LSRKN----IEDISMSLSGLGSKLFENYIE 774 (934)
T ss_pred cccccCChhheeEEEeccHHHHHHHHHHHHHHHHHH---------Hhh--ccccc----HHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111333 448999778777777877664410 001 11111 233445667777777777766
Q ss_pred HHHHHhhcccCCCcccchhhhhccCCCCCCCcC--CCcHHHHH---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 004985 558 QHALDLIFTEDGDSHLNADMYLNMDGNVDELEW--FPSLIFQE---LYAKLNRMASIAADMFVGRQRFATLLLMRLTETV 632 (721)
Q Consensus 558 ~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~--~ps~~fq~---lf~~l~~l~~~~~~~~~g~e~~~~~ll~rl~e~v 632 (721)
..+.-+.-+ +.|.+| . ....| .|+ +|+. +=+-|--|--+.+++|.+ .+.|+.++.+.+
T Consensus 775 ~k~~~i~~a------lEp~~~--~----~~~~W~~~~~-~~~irdYa~E~l~~lV~VhaEvf~i----ap~Ll~kiL~~~ 837 (934)
T KOG2347|consen 775 DKADPIRGA------LEPYLL--D----GGIQWGMAPP-VKGIRDYAKEALHNLVAVHAEVFAI----APQLLDKILGET 837 (934)
T ss_pred Hhhhhhhhc------ccchhh--c----cccccccCCC-ccchHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 666544433 556677 1 23456 444 5764 444455555566677776 678888888888
Q ss_pred HHHhcCCchhhhhhhcCCcCCCccchhhhhhhHHHHHHHHhhCCCCchhHH
Q 004985 633 ILWLSEDQSFWDDIEEGPKPLGPLGLQQFYLDMKFVICFASQGHYLSRNLH 683 (721)
Q Consensus 633 ~~~ls~~~~~w~~~e~~~~~~~~~glqq~~ldm~f~~~~a~~g~~~s~~~~ 683 (721)
|.-+|+ +|-..+..-...+.+.|.=|.++|..|+-.+- |+|.-....
T Consensus 838 ve~i~d--~L~~l~~~~v~s~S~nG~lQi~vdl~~l~~~l--~~Ylt~~a~ 884 (934)
T KOG2347|consen 838 VEGISD--ELLRLFSCDVQSFSANGALQIMVDLEYLEDVL--GPYLTKDAK 884 (934)
T ss_pred HHHHHH--HHHHHhhhhhhccCCCcceeeeeeHHHHHHHH--HHhccHHHH
Confidence 887884 56677765568889999999999999999998 999986433
No 9
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.76 E-value=0.0011 Score=78.00 Aligned_cols=441 Identities=16% Similarity=0.130 Sum_probs=265.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH-hhhhccccccccc--
Q 004985 48 NEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHG-LAEGVHIDSLKGS-- 124 (721)
Q Consensus 48 ~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~lI~~-Ls~~~~l~sl~~~-- 124 (721)
+.+++...-.+|.+...++..+.+..+-+||..|+.-.....++-.+...|..-+ ..+++. ..+.+. ..+...
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI---~d~l~~~~~~~i~-~~l~~a~~ 83 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREI---NDLLQSEIENEIQ-PQLRDAAE 83 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHhhccchhH-HHHHHHHH
Confidence 4568888888898888899999999999999999987666665533333333311 111111 000000 000000
Q ss_pred -cccCcccccccccCCCCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 004985 125 -ESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRR 203 (721)
Q Consensus 125 -~d~~~~~~~~~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er~ 203 (721)
......+=.+...-....+.++.+.+..+.++..+.+++|..|.+.+++++..+...+..+......+..++.+....+
T Consensus 84 e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr 163 (593)
T PF06248_consen 84 ELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELR 163 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHH
Confidence 0000000000000001235678888999999999999999999999999999999874443333457899999999999
Q ss_pred HHHHHHHHHHHcC------CCC------------------ChH--HHHHHHHHHHhCCCChHHHHHHHHHHH-HHHHHhc
Q 004985 204 QKLADQLAEAACQ------PST------------------RGA--ELRAAISALKKLGDGPRAHSLLLNAHY-QRYQYSM 256 (721)
Q Consensus 204 ~~L~~~L~~~l~~------~s~------------------~~~--elr~aV~lL~rLG~~~~A~~lfL~~rs-~~L~~~i 256 (721)
..|...|...... ++. ... .+...+..|-.||.-+..-..|-+.-- ..|+-.+
T Consensus 164 ~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~PlI 243 (593)
T PF06248_consen 164 ENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEHIIKPLI 243 (593)
T ss_pred HHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHh
Confidence 9999999776522 111 111 288999999999988654333322111 2223322
Q ss_pred cccc----cccccc-----ccchHHhh-------HHHHHHHHHHHHHHHHHhcCCCCcch-hhhHHHHHHHHHHHHHHHh
Q 004985 257 QSLR----PSSTSY-----GGAYTAAL-------SQLVFSAIAQAACDSLAIFGKETAYT-SELVMWATRQTEAFAHLVK 319 (721)
Q Consensus 257 r~l~----~eg~~~-----~~~YI~~L-------S~~fFs~I~~t~~~f~~~F~~~~~~~-S~LV~Wa~~eie~f~~l~~ 319 (721)
..-. .+...+ ...|.... -..+|+.|..+..-....+...+.-. +-+..+...-.......+-
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~~l~~~~g~~i~~~ls~~lI 323 (593)
T PF06248_consen 244 SHPSSIVSVEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDSSLSESFGDHIWPRLSELLI 323 (593)
T ss_pred cCCCCcccccccCCCcceEEEEeecccccccCCCHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 2110 000001 12333221 25788888888777776664433211 3455666677777777777
Q ss_pred HHhcCcc--cccCccHHHHHHHHHHHHhhhhhhhcCCCch--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 004985 320 RHALASS--AAAGGLRAAAECVQIALGHCSLLEARGLALC--PVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLT 395 (721)
Q Consensus 320 rqv~~~~--~aa~~ls~~~ecv~ia~~~c~~L~~vGLdl~--~lL~~ll~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~ 395 (721)
...+.+. ....++.....-++.+...+..|.+.|+--. ..|.+.....-..-+..-+..+.+..+.....|.+..+
T Consensus 324 ~~~L~~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~lgf~~~~~~~L~~~~~~i~~~f~~kr~~~iL~~AR~lm~~~~~~~v 403 (593)
T PF06248_consen 324 SNCLSPAIPTSASELQEFEEVLESVEEFEEALKELGFLSSDNTELSEFVDNIETHFANKRCQDILDKARDLMLRDLHDTV 403 (593)
T ss_pred HhhCcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccccce
Confidence 7766542 1234455556677888888999999998222 23323222222223334444667777888888887766
Q ss_pred --CCC------Cc------cc--------cc---ccc------ccccccchhHHHHHHHHHHHHHhhcccccccchhHHH
Q 004985 396 --YPP------MG------TR--------QA---SSM------ALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKML 444 (721)
Q Consensus 396 --~~~------~~------~~--------~~---~~~------~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~ 444 (721)
.+. .. .. .. ... -..|..|.|+..|+.++.+.+.+++. -++.....+.
T Consensus 404 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~c~IS~s~~~l~~L~~~~L~ea~~-~~~~~a~~l~ 482 (593)
T PF06248_consen 404 KVGPDSKAELPKLPSPGSSNKAKAKEESMSNENEDSLSPSLFQFPRCRISKSAQELVELAHQTLKEACK-SSERCAAQLF 482 (593)
T ss_pred EecccccccCCCCCCCcccchhhcccchhcccCccccccccccCCcceechhHHHHHHHHHHHHHHHhc-CChhhHHHHH
Confidence 111 00 00 00 000 15889999999999999999999933 3444555666
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchhhhhccCCccchhhccccHHHHHH-HHhhHHHHHHhHHHHHhhh
Q 004985 445 EGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIA-LLANASLLADELLPRAAMK 510 (721)
Q Consensus 445 ~~l~~lf~~yv~~l~~al~~~~~~~~~~e~~~~~~v~~a~t~~qq~~-ll~Na~~l~d~llp~~~~~ 510 (721)
..+.+||.-|... +|.. -+ +-=++.+|+-+ ...||.||+..++-.+...
T Consensus 483 ~~~r~i~~ly~~~----vP~~--h~-----------~~l~~ip~~aalf~NdC~ylah~l~~l~~~~ 532 (593)
T PF06248_consen 483 QTARDIFELYRAV----VPVY--HK-----------KLLESIPQQAALFHNDCMYLAHHLLTLGHEY 532 (593)
T ss_pred HHHHHHHHHHHHH----ccHH--HH-----------hhcccccHHHHhHhcchHHHHHHHHHhHHHH
Confidence 6777888877543 3410 00 00145778888 6699999999998887653
No 10
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.53 E-value=0.00019 Score=79.99 Aligned_cols=339 Identities=14% Similarity=0.177 Sum_probs=219.9
Q ss_pred CCCChHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHhHHhhHHHHHHHHHHHH
Q 004985 33 DKFDADVYVKSKC--SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANY-------AAFIRTSKEISDLEGELSSIRNLLS 103 (721)
Q Consensus 33 ~~Fdpe~YV~~ll--~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY-------~~FI~aSkEIs~LE~EM~~L~~lLs 103 (721)
|+|||-.|+..++ ..+..+|...-+.+..-++.++.++.+.|-+.= ..+-.|-..|..|-..+.+++.-=.
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999 888899999999999999999999998886532 2244555567777777777777666
Q ss_pred HHHHHHHHhhhhccccccccccccCcccccccccCCCCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHHhhc
Q 004985 104 TQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQ 183 (721)
Q Consensus 104 eq~~lI~~Ls~~~~l~sl~~~~d~~~~~~~~~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~ 183 (721)
.-...|..++.++. .|.-.+...+.+= + ..+.++-+....+.|..++..|+|.++..++.-...++...+.
T Consensus 82 ~sE~~V~~it~dIk--~LD~AKrNLT~SI------T-~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~ 152 (383)
T PF04100_consen 82 ESEQMVQEITRDIK--QLDNAKRNLTQSI------T-TLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKP 152 (383)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHc
Confidence 66666777766553 2211111100000 0 2467888999999999999999999999999999888866544
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 004985 184 TKTLDPAMLISLENTIIDRRQKLADQLAEAACQP---------STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQY 254 (721)
Q Consensus 184 ~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~---------s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~ 254 (721)
..+ ...+..+..++......|.+++..++..- ......+..|...+--||..-+ +-++.-.-+..-.
T Consensus 153 yks--i~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r--~~li~wf~~~qL~ 228 (383)
T PF04100_consen 153 YKS--IPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVR--EELIDWFCNKQLK 228 (383)
T ss_pred ccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHH--HHHHHHHHHHHHH
Confidence 431 22688899999999999999999876331 1123478899999999998744 3333322222222
Q ss_pred hcccccccccccccchHHhhHHHHHHHHHHHHHHH----HHhcCCCCcch-hhhHHHHHHHHHHHHHHHhHHhcCccccc
Q 004985 255 SMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDS----LAIFGKETAYT-SELVMWATRQTEAFAHLVKRHALASSAAA 329 (721)
Q Consensus 255 ~ir~l~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f----~~~F~~~~~~~-S~LV~Wa~~eie~f~~l~~rqv~~~~~aa 329 (721)
..+.+=..++. ..-++.+.+. |.=++.+...| ..+||..=... ...+.+|.-==+.+..++.+. ...
T Consensus 229 eY~~iF~~~~e--~~~Ld~i~RR-y~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~--~~~--- 300 (383)
T PF04100_consen 229 EYRRIFRENDE--AASLDNIDRR-YAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKR--KSE--- 300 (383)
T ss_pred HHHHHHccccc--ccchhhHHHH-HHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhc--CCC---
Confidence 22222212222 2344555533 33333444444 55566531101 122233332223333444332 222
Q ss_pred CccHHHHHHHHHHHHhhhhhhh-c-C------------------CCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 004985 330 GGLRAAAECVQIALGHCSLLEA-R-G------------------LALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAA 389 (721)
Q Consensus 330 ~~ls~~~ecv~ia~~~c~~L~~-v-G------------------Ldl~~lL~~ll~p~ve~al~~~~~~i~e~i~~~~~~ 389 (721)
.+......|++.+...=..|.. . | -.|...+...|.|++.-=++.--+.+.+-+...+.+
T Consensus 301 ~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~e~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~ 380 (383)
T PF04100_consen 301 LDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKKKEMKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISE 380 (383)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566777888888776554542 2 1 256778999999999888888888889999999999
Q ss_pred CCc
Q 004985 390 DDW 392 (721)
Q Consensus 390 d~W 392 (721)
++|
T Consensus 381 ~~w 383 (383)
T PF04100_consen 381 EKW 383 (383)
T ss_pred cCC
Confidence 999
No 11
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=98.49 E-value=0.00028 Score=85.22 Aligned_cols=408 Identities=15% Similarity=0.151 Sum_probs=239.3
Q ss_pred hhcccCCCCCChHHHHHHhc-cCCH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHH
Q 004985 26 GLNLFKSDKFDADVYVKSKC-SLNE----KE----IRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELS 96 (721)
Q Consensus 26 ~~~~f~~~~Fdpe~YV~~ll-~~~e----~~----L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~ 96 (721)
|+..|.+++|||-+||+.-+ ..+. .. +..+..+|+-..++++..+.+..-+==..==++.+||..|..|..
T Consensus 1 d~s~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~ 80 (766)
T PF10191_consen 1 DLSAFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAA 80 (766)
T ss_pred ChhhhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35689999999999999999 3222 22 445555555444444444433332222222278999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcc--------ccccccccccCcccccccccCCCCCchhhhhhhhhhhHHHHHHccCHHHHH
Q 004985 97 SIRNLLSTQATLIHGLAEGVH--------IDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEAL 168 (721)
Q Consensus 97 ~L~~lLseq~~lI~~Ls~~~~--------l~sl~~~~d~~~~~~~~~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV 168 (721)
.|++-|..-...+........ ++..+.+.+... +. +.+.-+|- .+-.++|..++.++++.+.
T Consensus 81 ~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~--------~~-L~EA~~w~-~l~~~v~~~~~~~d~~~~a 150 (766)
T PF10191_consen 81 SLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAAR--------ET-LQEADNWS-TLSAEVDDLFESGDIAKIA 150 (766)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHhHH-HHHHHHHHHHhcCCHHHHH
Confidence 999966655554444321111 000000111000 00 11233455 4888999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCCChHHHHHHHHHHHhCCCChHHHHHH
Q 004985 169 TALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLA----DQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLL 244 (721)
Q Consensus 169 ~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er~~~L~----~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A~~lf 244 (721)
+.+...++.+.-..+.|+ ...=+..++.-+++|. -+|...+. +-....++..+..+.++|+.++....|
T Consensus 151 ~~l~~m~~sL~~l~~~pd-----~~~r~~~le~l~nrLEa~vsp~Lv~al~--~~~~~~~~~~~~if~~i~R~~~l~~~Y 223 (766)
T PF10191_consen 151 DRLAEMQRSLAVLQDVPD-----YEERRQQLEALKNRLEALVSPQLVQALN--SRDVDAAKEYVKIFSSIGREPQLEQYY 223 (766)
T ss_pred HHHHHHHHHHHHHcCCCc-----hhHHHHHHHHHHHHHHHHhhHHHHHHHH--hcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998887762 2222222333233333 34444443 234679999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccc-cccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhHHhc
Q 004985 245 LNAHYQRYQYSMQSLRPSS-TSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHAL 323 (721)
Q Consensus 245 L~~rs~~L~~~ir~l~~eg-~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~~~~~~S~LV~Wa~~eie~f~~l~~rqv~ 323 (721)
-++|...++..=....... +..-..++...-..+.+.+..=..|...+||+... .+..-..+-+......|..++-
T Consensus 224 ~~~r~~~l~~~W~~~~~~~~~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~---~~~~ll~~~L~~L~PS~~~~l~ 300 (766)
T PF10191_consen 224 CKCRKAPLQRLWQEYCQSDQSQSFAEWLPSFYDELLSLLHQELKWCSQVFPDESP---VLPKLLAETLSALQPSFPSRLS 300 (766)
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhcCccHHHHHH
Confidence 9999999998865554333 11224666777777788888888899999999643 2222222233322222222221
Q ss_pred Cc-ccccC--ccHHHHHHHHHHHHhhhhhhh----cC--CC---chHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004985 324 AS-SAAAG--GLRAAAECVQIALGHCSLLEA----RG--LA---LCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADD 391 (721)
Q Consensus 324 ~~-~~aa~--~ls~~~ecv~ia~~~c~~L~~----vG--Ld---l~~lL~~ll~p~ve~al~~~~~~i~e~i~~~~~~d~ 391 (721)
.. ..+.+ .+....++-+++...+..|+. .. .+ +..++.-++.|. ......|-..=+..+...+
T Consensus 301 ~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~al~~PF-~~~q~~Yg~lE~~~L~~~L---- 375 (766)
T PF10191_consen 301 SALKRAGPETKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEELLQALFEPF-KPYQQRYGELERRFLSAQL---- 375 (766)
T ss_pred HHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----
Confidence 10 00112 377777777777766655543 11 11 223444444444 3333444333333332222
Q ss_pred ceecCCCCccccccccccccccchhHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHhCC
Q 004985 392 WVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALP 463 (721)
Q Consensus 392 W~~~~~~~~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~yv~~l~~al~ 463 (721)
...... ..... ++-=.|..|..+......+=++-|..+..--=...++..|..+|..|++.+-.++.
T Consensus 376 -~~l~~~-~~~~~---d~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~~Ll~Ald~~~~~y~~~~~~~l~ 442 (766)
T PF10191_consen 376 -SALDLE-SAELS---DAVRRLEESIPKLFGLAEEAVDRCIAFTGGYGVPGLLKALDSIFSQYLSSLTATLR 442 (766)
T ss_pred -HhcccC-CCcHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112111 01111 12225677777888888888899988865554456678888999999887655554
No 12
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.45 E-value=3e-05 Score=83.24 Aligned_cols=218 Identities=17% Similarity=0.172 Sum_probs=162.3
Q ss_pred cCCCCCChHHHHHHhc--c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 004985 30 FKSDKFDADVYVKSKC--S-LNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQA 106 (721)
Q Consensus 30 f~~~~Fdpe~YV~~ll--~-~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~ 106 (721)
|=+++|||..|.-+.+ . .+.+++....++|....+.....|-+.|-+||..|..+-+.|..++.++..--..+.+.+
T Consensus 8 yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R 87 (291)
T PF10475_consen 8 YFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLR 87 (291)
T ss_pred hcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455999999986666 4 678899999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHhhhhcccccccc-----ccccCcccccccccCCCCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 004985 107 TLIHGLAEGVHIDSLKG-----SESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEA 181 (721)
Q Consensus 107 ~lI~~Ls~~~~l~sl~~-----~~d~~~~~~~~~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~ 181 (721)
..+....+.+.-.++.- ++... .+. ....+.++-+.+.-..++.++++++|..|++++...++.+..+
T Consensus 88 ~~L~~~~~~~~~~~L~Il~~~rkr~~l--~~l-----l~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l 160 (291)
T PF10475_consen 88 RNLKSADENLTKSGLEILRLQRKRQNL--KKL-----LEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEEL 160 (291)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 88887766654111110 11100 000 0023456778888889999999999999999999999999887
Q ss_pred hccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcccc
Q 004985 182 KQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSL 259 (721)
Q Consensus 182 ~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~--s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~ir~l 259 (721)
.+-. ++..+..++.+....+.++|-..+..- ...+..=.+....-.-||+...+++-+..+....|......+
T Consensus 161 ~~~~-----c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~v 235 (291)
T PF10475_consen 161 KGYS-----CVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFSV 235 (291)
T ss_pred ccch-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6643 688888888888888888887777442 234444444445555667777777777666666666555544
No 13
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=98.11 E-value=0.0036 Score=72.20 Aligned_cols=271 Identities=14% Similarity=0.146 Sum_probs=169.9
Q ss_pred HHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 004985 42 KSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDS 120 (721)
Q Consensus 42 ~~ll-~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~lI~~Ls~~~~l~s 120 (721)
..++ ..+-.+|+..++.+++..+.-.++|++.|=+-|+.-|+++++|.+|.+--..|..-+..-..-..+|..+..
T Consensus 11 d~LFethsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~sv--- 87 (863)
T KOG2033|consen 11 DTLFETHSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSV--- 87 (863)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc---
Confidence 3444 678899999999999999999999999999999999999999999988777777655555555555532221
Q ss_pred cccccccCcccccccccCCC-CCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHHhhccCCCChHHHH---HHH
Q 004985 121 LKGSESFASKNDLLNLENKE-PSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLI---SLE 196 (721)
Q Consensus 121 l~~~~d~~~~~~~~~~e~~e-~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~---~i~ 196 (721)
..+++..+-....++-- .--..+.|.+.|+.+=-++...+|=+|+.+|..++.+-++.-.....+ +... .+.
T Consensus 88 ---A~tp~raeqnp~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss-~ll~nfP~l~ 163 (863)
T KOG2033|consen 88 ---AKTPGRAEQNPAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSS-MLLKNFPALT 163 (863)
T ss_pred ---cCCcchhhcCchhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCc-HHHhhcHHHH
Confidence 01111000000000000 012467899999999999999999999999999987776332211111 1111 111
Q ss_pred HHHHHH---HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHhcccccccccccccchH
Q 004985 197 NTIIDR---RQKLADQLAEAACQPSTRGAELRAAISALKKLGDG--PRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYT 271 (721)
Q Consensus 197 ~ki~er---~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~--~~A~~lfL~~rs~~L~~~ir~l~~eg~~~~~~YI 271 (721)
.+...- +..+..+-...+..++..-.....++..+.-|.+. +++.++||..|...+.+.+.. |..+|..-.
T Consensus 164 ~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLdesdpsqvLelFL~~Rk~~il~lLn~----~p~~~~~vk 239 (863)
T KOG2033|consen 164 NQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLDESDPSQVLELFLEKRKEHILHLLND----GPSEPRRVK 239 (863)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhc----CCCccchhH
Confidence 111111 13333344444445555555555555555555544 578999999999999998886 222334444
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcCCC-------------------CcchhhhHHHHHHHHHHHHHHHhHHhcC
Q 004985 272 AALSQLVFSAIAQAACDSLAIFGKE-------------------TAYTSELVMWATRQTEAFAHLVKRHALA 324 (721)
Q Consensus 272 ~~LS~~fFs~I~~t~~~f~~~F~~~-------------------~~~~S~LV~Wa~~eie~f~~l~~rqv~~ 324 (721)
..+|.+ ...|+.|+..-.++|-.. +.+-+.+-.|...-.+.-+..+-|+..+
T Consensus 240 a~il~~-v~vl~~Tl~qv~elfl~~~Llfstle~c~gq~~~~~i~emE~~l~~sf~~lpesim~f~pr~lv~ 310 (863)
T KOG2033|consen 240 ATILNI-VDVLKKTLAQVEELFLHGELLFSTLEVCNGQYKCELIREMEADLAYSFEKLPESIMDFVPRHLVE 310 (863)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHhcCCccCCCCchHHHHHHHHHHHhhHHHHhhccchhccc
Confidence 454443 244555555555555332 1123667788888888888877777543
No 14
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.078 Score=61.98 Aligned_cols=410 Identities=13% Similarity=0.132 Sum_probs=238.9
Q ss_pred hhhcccCCCCCChHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHH
Q 004985 25 EGLNLFKSDKFDADVYVKSKC--SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLL 102 (721)
Q Consensus 25 ~~~~~f~~~~Fdpe~YV~~ll--~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lL 102 (721)
+-.+.|.+|+|+.=.|+..++ ..+..+|..+-+++....++.+.+++.+|-.+=|.=-+.-+-..+.+.-|.+|.+.+
T Consensus 9 ~I~q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i 88 (793)
T KOG2180|consen 9 DINQMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKI 88 (793)
T ss_pred HHHHhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 456788899999999999999 889999999999999999999999999998776665555555556666666666666
Q ss_pred HHHHHH-------HHHhhhhccccccccccccCcccccccccCCCCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHH
Q 004985 103 STQATL-------IHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGE 175 (721)
Q Consensus 103 seq~~l-------I~~Ls~~~~l~sl~~~~d~~~~~~~~~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~ 175 (721)
.+-++. |..++.++. .|.-.+...+.+=+ +.+.++-|.+--+.|.+++..|.|.+|+..+...-
T Consensus 89 ~eiks~ae~Te~~V~eiTrdIK--qLD~AKkNLTtSiT-------~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~ 159 (793)
T KOG2180|consen 89 QEIKSVAESTEAMVQEITRDIK--QLDFAKKNLTTSIT-------TLHRLHMLVTGVESLNALLSKRSYGEAASPLQAIL 159 (793)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH--hhhHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHH
Confidence 655443 333333221 11111111000000 23567888999999999999999999999998887
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChH----------HHHHHHHHHHhCCCChHHHHHHH
Q 004985 176 HLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGA----------ELRAAISALKKLGDGPRAHSLLL 245 (721)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~----------elr~aV~lL~rLG~~~~A~~lfL 245 (721)
.++.....-. +...+..+...++..+..|..++.+.+.+.- +++ .+..+...+--|.- .-++.++
T Consensus 160 ~ll~~F~~Yk--~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F-~~~~~~~~~~~l~~l~daC~v~d~lep--svreelI 234 (793)
T KOG2180|consen 160 QLLNHFIAYK--SVDEIANLSESIDKLKKSLLSQIFQDFKAAF-SGGETHEEALLLQKLSDACLVVDALEP--SVREELI 234 (793)
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCccHHHHHHHHHHHHHHhCC--ccHHHHH
Confidence 7776543332 1226888999999999999999999885431 122 22222222222221 1122222
Q ss_pred HHHHHHHHHhcccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCC-Cc---ch-hhhHHHHHHHHHHHHHHHhH
Q 004985 246 NAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKE-TA---YT-SELVMWATRQTEAFAHLVKR 320 (721)
Q Consensus 246 ~~rs~~L~~~ir~l~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~~-~~---~~-S~LV~Wa~~eie~f~~l~~r 320 (721)
+.+=...-....++=.++.- ....+++.+.| .-++.-..+|...|+.- |+ .. -..+.+|..==+....+++|
T Consensus 235 kwf~~qqL~ey~~IF~en~E--~a~LDkidrRY-~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~ 311 (793)
T KOG2180|consen 235 KWFCSQQLEEYEQIFRENEE--AASLDKLDRRY-AWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKR 311 (793)
T ss_pred HHHHHHHHHHHHHHHhccHh--hhhhhhHHHHH-HHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111111222111111 34455555433 23334445555544421 11 11 22334444444444445554
Q ss_pred HhcCcccccCccHHHHHHHHHHHHhhhhhh-hcC-------------------CCchHHHHHhhhHHHHHHHHHHHHHHH
Q 004985 321 HALASSAAAGGLRAAAECVQIALGHCSLLE-ARG-------------------LALCPVLIKLFRPSVEQALDANLKRIE 380 (721)
Q Consensus 321 qv~~~~~aa~~ls~~~ecv~ia~~~c~~L~-~vG-------------------Ldl~~lL~~ll~p~ve~al~~~~~~i~ 380 (721)
.--. .+.....-+++.+...=..|. ..| -.|...+...|.||+.=-++..-..+.
T Consensus 312 ~~~~-----~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ 386 (793)
T KOG2180|consen 312 RKKE-----PDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELS 386 (793)
T ss_pred hhhC-----ccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhHHHHHHH
Confidence 4311 446666677777766655554 232 367788889999998888888778888
Q ss_pred HHHHHHHhcCCceecCCCCccccccccccccccchhHHHHHHHHHHHHHhhcccccc-c-chhHHHHHHHHHHHHHHHHH
Q 004985 381 ESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSM-Q-LGGKMLEGLFQVFNSYVSML 458 (721)
Q Consensus 381 e~i~~~~~~d~W~~~~~~~~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~-~-L~~~~~~~l~~lf~~yv~~l 458 (721)
+-+...+.+.+|.. +|....- .....|.+|+.-|. .+...+-.|..|..- + +..... ...+..+.|-..+
T Consensus 387 ellek~v~e~~~~~--~p~~~~~----~~s~vlpSsadlF~-~Ykkcltq~~~Ls~n~dpl~~~~~-~f~k~LreYa~ki 458 (793)
T KOG2180|consen 387 ELLEKFVSEEKWDG--EPKSNTD----EESLVLPSSADLFV-AYKKCLTQCSELSENNDPLIALLA-VFSKWLREYAQKI 458 (793)
T ss_pred HHHHHHHhhhccCC--CCCCCcc----cccccCccHHHHHH-HHHHHHHHHHHhccCCchHHHHHH-HHHHHHHHHHHHH
Confidence 88888899999984 2211111 12235566666554 334555555666433 3 222222 4455555666533
Q ss_pred -HHhCCC
Q 004985 459 -IKALPG 464 (721)
Q Consensus 459 -~~al~~ 464 (721)
...+|.
T Consensus 459 l~~~lP~ 465 (793)
T KOG2180|consen 459 LLGNLPD 465 (793)
T ss_pred hhccCCc
Confidence 334453
No 15
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=97.21 E-value=0.00019 Score=68.29 Aligned_cols=88 Identities=17% Similarity=0.314 Sum_probs=13.8
Q ss_pred hcccCCCCCChHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 004985 27 LNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQA 106 (721)
Q Consensus 27 ~~~f~~~~Fdpe~YV~~ll~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~ 106 (721)
.+.|..|+|||+.||.+. .....|..++.+|......+.++|-..|=+||..||.-|..+..++..+..++.=|..-+
T Consensus 5 ~~~F~~~~Fd~d~Fl~~~--~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~ 82 (133)
T PF06148_consen 5 KEEFTKPDFDVDEFLSSN--RRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFR 82 (133)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 357899999999999993 345566677789999999999999999999999999999999999999999999888888
Q ss_pred HHHHHhhhhc
Q 004985 107 TLIHGLAEGV 116 (721)
Q Consensus 107 ~lI~~Ls~~~ 116 (721)
..|.+....+
T Consensus 83 ~~v~~~~~~l 92 (133)
T PF06148_consen 83 EEVESVRDEL 92 (133)
T ss_dssp HHHHHHHHS-
T ss_pred HHHHHHHHHH
Confidence 8777764443
No 16
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.05 E-value=0.0062 Score=57.95 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=77.8
Q ss_pred ccCCCCCChHHHHHHhc------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHH
Q 004985 29 LFKSDKFDADVYVKSKC------SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLL 102 (721)
Q Consensus 29 ~f~~~~Fdpe~YV~~ll------~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lL 102 (721)
.|-+|+|||..|...++ +.+..++..--++|..-.+.+++.|++.|..||...+.-+..+..+|+.+..++..+
T Consensus 2 ~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v 81 (132)
T PF10392_consen 2 AFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSV 81 (132)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 58899999999999999 244567777888888888999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhhhhcc
Q 004985 103 STQATLIHGLAEGVH 117 (721)
Q Consensus 103 seq~~lI~~Ls~~~~ 117 (721)
......+.-|...+.
T Consensus 82 ~~L~~s~~RL~~eV~ 96 (132)
T PF10392_consen 82 ESLQSSYERLRSEVI 96 (132)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888777777766554
No 17
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=2.2 Score=49.11 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=71.2
Q ss_pred hhhhhcccccccccCCcchhhhhcccCCCCCChHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004985 5 AKTARSRAAAAAENGGAKIEEGLNLFKSDKFDADVYVKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIR 83 (721)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~Fdpe~YV~~ll-~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~ 83 (721)
.|++-.-|.|..-|+- .|==+-..|..+|||+|.|+.... ....++||+ +|.---..+...|-..+-+.|..|+-
T Consensus 4 ~k~sa~~~~g~~~d~~-kLcFdk~eFmkedFdve~f~s~~R~~v~letLrd---dLrlylksl~~aMieLIN~DYADFVn 79 (705)
T KOG2307|consen 4 EKTSAALPNGFYIDES-KLCFDKTEFMKEDFDVERFMSLARQKVDLETLRD---DLRLYLKSLQNAMIELINDDYADFVN 79 (705)
T ss_pred ccccccCCCCCCCCcc-ccccChhhhccccCCHHHHHHHHhccCCHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 4445555555443332 222234578999999999999988 666777663 44443346667888999999999999
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHh
Q 004985 84 TSKEISDLEGELSSIRNLLSTQATLIHGL 112 (721)
Q Consensus 84 aSkEIs~LE~EM~~L~~lLseq~~lI~~L 112 (721)
-|--...|..-+.+++.=|...+.-|.++
T Consensus 80 LStnLVgld~aln~i~qpL~qlreei~s~ 108 (705)
T KOG2307|consen 80 LSTNLVGLDDALNKIEQPLNQLREEIKST 108 (705)
T ss_pred hhhhhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 88777777777777776666666666554
No 18
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=96.18 E-value=3.6 Score=47.68 Aligned_cols=367 Identities=14% Similarity=0.163 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHHHHhc-------CCCC--cchhhhHHHHHHHHHHHHHHHhHHhcCcccccCccHHHHHHHHHHHHhh
Q 004985 276 QLVFSAIAQAACDSLAIF-------GKET--AYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHC 346 (721)
Q Consensus 276 ~~fFs~I~~t~~~f~~~F-------~~~~--~~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~ls~~~ecv~ia~~~c 346 (721)
.-||+.|....+++...+ -+.. .+.+....|++..+..-..-+...+.... .+-+.++.-|.-++..=
T Consensus 31 Ew~f~~i~~~~~~~~~~l~~~iq~~~~~~~~~~~~~~~~fi~~ll~~~~~Kl~~~l~~~~---~~~~~l~HlI~e~~~FD 107 (494)
T PF04437_consen 31 EWYFTFILKWIRDHRDFLEECIQPLLDENGLTYIDAREEFIRGLLPPVREKLRSDLPELL---DDPSLLSHLIDEILSFD 107 (494)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHH-BGGTB-HHHHHHHHHHHHHHHHHHHHHHHH--TT---S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHcCHHHHhcCCccccHHHHHHHHHHHHHHHHHHHHHHhhc---cChhHHHHHHHHHHHHH
Confidence 456666666666653222 1111 23466778888888777777777764333 56677777777777766
Q ss_pred hhhhhc-CCCc-------hHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCCCccccccccccccccchhH
Q 004985 347 SLLEAR-GLAL-------CPVL-IKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSA 417 (721)
Q Consensus 347 ~~L~~v-GLdl-------~~lL-~~ll~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~~~~~~~~~~LT~S~ 417 (721)
..|.+. |.+- .-+. ...+..=++--.+...+|..+ | ..++|.|...+.. ..+.....+.|.||
T Consensus 108 ~~L~~~~~y~~d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~-i--~~s~~aw~~~~~~-----~~~~~~~~k~t~~A 179 (494)
T PF04437_consen 108 KELRSLYGYPGDWQGSTLDVLCQPDWFDRWLNAEKEFALERFDE-I--ISSPDAWQIDYDD-----VEADSDELKPTKSA 179 (494)
T ss_dssp HHHHHTS---S------CGGGS-HHHHHHHHHHHHHHHHHHHH-----------------------HTTSSGGGG-GGHH
T ss_pred HHHHHHcCCCCccchhHHHHhcchHHHHHHHHHHHHHHHHHHhh-h--cccchhhhhhhcc-----ccCCchhhcchHHH
Confidence 666542 3332 2111 122222222223333444443 2 3468899876432 10123467899999
Q ss_pred HHHHHHHHHHHHhhcccccccchhHHH-HHHHHHHHHHHHHHHHhCCCCch---hhhhccCCccchhhccccHHHHHH-H
Q 004985 418 HRFNLMVQDFFEDVGPLLSMQLGGKML-EGLFQVFNSYVSMLIKALPGSME---EEANFEGSGNKIVRMAENEAQQIA-L 492 (721)
Q Consensus 418 ~~F~~~v~~f~ed~~~L~~~~L~~~~~-~~l~~lf~~yv~~l~~al~~~~~---~~~~~e~~~~~~v~~a~t~~qq~~-l 492 (721)
.+|++++..+.+.+.+|.+....--.+ +.=..+++.|-+.|...+.+-.. -... .-....-++++ +
T Consensus 180 ~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~~~~~~~~~s~~~~---------~~~~~~l~~l~~~ 250 (494)
T PF04437_consen 180 ERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQSLEAFESSTSTLAS---------LSGDSGLERLCKI 250 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHHHHHHHHT----SC---------EEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh---------ccCCchHHHHHHH
Confidence 999999999999999998776444333 22233444454444433210000 0000 00122345566 8
Q ss_pred HhhHHHHHHhHHHHHhhhhc-CC-----ccCCCC-CCcCCC--CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004985 493 LANASLLADELLPRAAMKVS-PL-----NQANYK-DDPRRR--HSDRQNRNPEQREWKRRLVISVDRLKDTFCRQHALDL 563 (721)
Q Consensus 493 l~Na~~l~d~llp~~~~~~~-~~-----~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~~fc~~~~~~~ 563 (721)
+++|.+|...|---.-.-+| +. ...... .+..++ ...+..+.......++...++.+++-+++++.+=-.+
T Consensus 251 lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~l 330 (494)
T PF04437_consen 251 LNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASL 330 (494)
T ss_dssp HHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998765433332221 00 000000 000000 0112233344455666555666677666665544333
Q ss_pred h-cccCCCcccchhhhhccCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCCchh
Q 004985 564 I-FTEDGDSHLNADMYLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSF 642 (721)
Q Consensus 564 i-~~~~~~~~~~~~~y~~~~~~~~~~~~~ps~~fq~lf~~l~~l~~~~~~~~~g~e~~~~~ll~rl~e~v~~~ls~~~~~ 642 (721)
= |.. ..+|+...- ..+...+-||+=+-.....|++.=+.....+... ....+-+++.+.+..| +
T Consensus 331 k~Y~k--~~~W~~~~~-----~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~--~f~~i~r~ia~~l~~~------l 395 (494)
T PF04437_consen 331 KAYFK--RSQWSSIES-----PSDSSPLSPSPELVPALSLLRSRLSFLERSLPPA--DFRRIWRRIASKLDDY------L 395 (494)
T ss_dssp HHHHT----GGGT------------------GGGHHHHHHHHHHHHHHHTS--HH--HHHHHHHHHHHHHHHH------H
T ss_pred HHHhC--ccCCCCccc-----ccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHH------H
Confidence 3 542 245543222 1122224566655555555554433333332222 1224566666666554 4
Q ss_pred hhhhhcCCcCCCccchhhhhhhHHHHHHHHhhCCCCch
Q 004985 643 WDDIEEGPKPLGPLGLQQFYLDMKFVICFASQGHYLSR 680 (721)
Q Consensus 643 w~~~e~~~~~~~~~glqq~~ldm~f~~~~a~~g~~~s~ 680 (721)
|+.|=. .+.+.+.|..||..||+.+..+ ++.|..+
T Consensus 396 ~~~Il~-~n~Fs~~Ga~Ql~~D~~~L~~~--~~~~~~~ 430 (494)
T PF04437_consen 396 WESILM-SNKFSRAGAAQLQFDMRALFSV--FSQYTPR 430 (494)
T ss_dssp HHTTTT-TS-B-HHHHHHHHHHHHHHHTT--S--TTSG
T ss_pred HHHhhh-cCeeChhHHHHHHHHHHHHHHH--HHhhccC
Confidence 553222 2488999999999999886655 5777665
No 19
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=18 Score=41.26 Aligned_cols=410 Identities=15% Similarity=0.164 Sum_probs=204.2
Q ss_pred hcccCCCCCChHHHHHHhc-----cCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHH
Q 004985 27 LNLFKSDKFDADVYVKSKC-----SLN-------EKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGE 94 (721)
Q Consensus 27 ~~~f~~~~Fdpe~YV~~ll-----~~~-------e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~E 94 (721)
+..|.+..|||..||+..+ ..+ ++-|++++.+|+-........+...--.-...-=+|+|+...|..+
T Consensus 3 lg~fSdekFda~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~D 82 (828)
T KOG4182|consen 3 LGAFSDEKFDAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQAD 82 (828)
T ss_pred CccccccccCHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHHH
Confidence 4578999999999999888 222 4567888888876666666655555444445566789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc---ccccccccccCcccccccccC-CCCCchhhhhhhhhhhHHHHHHccCHHHHHHH
Q 004985 95 LSSIRNLLSTQATLIHGLAEGVH---IDSLKGSESFASKNDLLNLEN-KEPSDLEKWSVEFPDLLDVLLAERRIDEALTA 170 (721)
Q Consensus 95 M~~L~~lLseq~~lI~~Ls~~~~---l~sl~~~~d~~~~~~~~~~e~-~e~~~~l~wl~elpdeLDv~IAer~feeAV~l 170 (721)
...|+.-++...-.+... ++.+ ++.+ .+.|...+ +.+- .+....-.-+..+..+|..-.+.++...|-+-
T Consensus 83 a~~Lq~kma~il~el~~a-egesadCiAaL-aRldn~kQ----kleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadk 156 (828)
T KOG4182|consen 83 AHRLQEKMAAILLELAAA-EGESADCIAAL-ARLDNKKQ----KLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADK 156 (828)
T ss_pred HHHHHHHHHHHHHHHHHH-hCChHHHHHHH-HHhccHHH----HHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHH
Confidence 999998665443333322 1111 1111 11111000 0000 00001112345567777778888888888887
Q ss_pred HHHHHHHHHHhhccCCCChHHHHHHHHHHHH---HHHHHH-HHHHHHHcCCCCChHHHHHHHHHHHhCCCChHHHHHHHH
Q 004985 171 LDEGEHLAAEAKQTKTLDPAMLISLENTIID---RRQKLA-DQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLN 246 (721)
Q Consensus 171 l~k~~~~L~~~~~~~~~~~~~~~~i~~ki~e---r~~~L~-~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A~~lfL~ 246 (721)
+...++.+......+ .+...+.+++. |...|+ -.|.+.+.... ......-+..++|.|+..+--.-|=+
T Consensus 157 LaalqkcL~A~~ela-----efAe~qkQlE~~edRLEAlaqPrltda~a~~k--td~AQd~r~I~irIgRfkqLelqY~~ 229 (828)
T KOG4182|consen 157 LAALQKCLHAQEELA-----EFAERQKQLEDFEDRLEALAQPRLTDAFAEGK--TDQAQDFRQIFIRIGRFKQLELQYRA 229 (828)
T ss_pred HHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHcCchHHHHHHccC--hHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 777777665433322 23333333332 222222 12222222111 12334445678999998877666666
Q ss_pred HHHHHHHHhccccc------------------ccccc-----cccchHHhhHHHHH----HHHHHHHHHHHHhcCCCCc-
Q 004985 247 AHYQRYQYSMQSLR------------------PSSTS-----YGGAYTAALSQLVF----SAIAQAACDSLAIFGKETA- 298 (721)
Q Consensus 247 ~rs~~L~~~ir~l~------------------~eg~~-----~~~~YI~~LS~~fF----s~I~~t~~~f~~~F~~~~~- 298 (721)
.+.+-++..-.+.. .+|+. ..+.|-.=| ..|+ -...+-++|....||++-.
T Consensus 230 Vq~k~ikQlWedfd~kQ~anklanersesqrlssgdEfQstssq~qfaq~L-T~fYDeLL~~~eqe~KWCm~aF~ddym~ 308 (828)
T KOG4182|consen 230 VQKKFIKQLWEDFDEKQGANKLANERSESQRLSSGDEFQSTSSQPQFAQFL-TLFYDELLEHCEQEVKWCMNAFGDDYMP 308 (828)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhcchhhhhcccccccccccccChHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 66555554332211 11211 001111111 1222 2345567889999999721
Q ss_pred ------------chhhh-------HHHHHHHHHHHHHHHhHHhcCcccccCccHHHHHHHHHHHHhhh-hhhhcCCC---
Q 004985 299 ------------YTSEL-------VMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCS-LLEARGLA--- 355 (721)
Q Consensus 299 ------------~~S~L-------V~Wa~~eie~f~~l~~rqv~~~~~aa~~ls~~~ecv~ia~~~c~-~L~~vGLd--- 355 (721)
....+ ..=+.++++..+.-.+... + +++ ...|.|-..|.. .++..-+.
T Consensus 309 l~~kliaE~lgaLgasf~a~i~la~gda~~e~eaLAk~a~dl~-S-----gdl---pkgini~tkHLeaLiElh~iTgsf 379 (828)
T KOG4182|consen 309 LPFKLIAELLGALGASFDAHILLALGDANEELEALAKFAKDLH-S-----GDL---PKGINIFTKHLEALIELHHITGSF 379 (828)
T ss_pred ccHHHHHHHHhhhchhHHHHHHHHhccccHHHHHHHHHHHHhc-c-----CcC---ccchhHHHHHHHHHHHHhhcchhh
Confidence 00111 1123344444444333221 1 111 223344445553 23333333
Q ss_pred -------chHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HhcCCceecCCCCcccccccc-----ccccccchhHHH
Q 004985 356 -------LCPVLIKLFRPSVEQALDANLKRIEESTAAM----AAADDWVLTYPPMGTRQASSM-----ALQHRLTTSAHR 419 (721)
Q Consensus 356 -------l~~lL~~ll~p~ve~al~~~~~~i~e~i~~~----~~~d~W~~~~~~~~~~~~~~~-----~~~~~LT~S~~~ 419 (721)
|..-.+++|-..+ +|+-.++.+.+..-..+ .+.+-=+...-....|..++. +.--.|-.|+.+
T Consensus 380 arniqhlfaEee~RiL~dtl-eAifepFekF~QkYgklE~aiLSseia~ldlrgavtrgvgang~elSd~VR~lEESipk 458 (828)
T KOG4182|consen 380 ARNIQHLFAEEEHRILGDTL-EAIFEPFEKFIQKYGKLEEAILSSEIARLDLRGAVTRGVGANGAELSDGVRHLEESIPK 458 (828)
T ss_pred hhhHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhhHH
Confidence 3333333333332 23334444333321110 000000000001112221100 122367788888
Q ss_pred HHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHH
Q 004985 420 FNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIK 460 (721)
Q Consensus 420 F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~yv~~l~~ 460 (721)
.+-.+..-.|.|.-+.+--=..-+...|.+||..|++++-.
T Consensus 459 lv~lLeaA~ERC~gfTg~~~a~eLIlaLddI~~q~iem~~e 499 (828)
T KOG4182|consen 459 LVELLEAACERCAGFTGDLAACELILALDDIFKQQIEMFGE 499 (828)
T ss_pred HHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876555555666788899999998743
No 20
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=92.53 E-value=1 Score=43.37 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=60.3
Q ss_pred ccCCCCCChHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HhHHhhHHHHHHHHHH
Q 004985 29 LFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTS-------KEISDLEGELSSIRNL 101 (721)
Q Consensus 29 ~f~~~~Fdpe~YV~~ll~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aS-------kEIs~LE~EM~~L~~l 101 (721)
.+-.++|+|=..+-.++..+--++.+...++.++++.++..|+..|-+||..|=++= ..|+.-...+.++++-
T Consensus 15 ~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~ 94 (142)
T PF04048_consen 15 FMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKES 94 (142)
T ss_pred HHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999994444568888999999999999999999999999997763 3344444444455554
Q ss_pred HHHHHHHH
Q 004985 102 LSTQATLI 109 (721)
Q Consensus 102 Lseq~~lI 109 (721)
|.+-+..+
T Consensus 95 L~~ak~~L 102 (142)
T PF04048_consen 95 LQEAKSLL 102 (142)
T ss_pred HHHHHHHH
Confidence 44444444
No 21
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.89 E-value=1.8 Score=52.24 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=107.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004985 46 SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIR-------TSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHI 118 (721)
Q Consensus 46 ~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~-------aSkEIs~LE~EM~~L~~lLseq~~lI~~Ls~~~~l 118 (721)
+.+.+++....+.|.+-=+.....|++.|.++|..|-+ ++.+|..-..-...+++-|.+.+.+|++=.+...
T Consensus 42 Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLq- 120 (982)
T KOG3691|consen 42 SEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQ- 120 (982)
T ss_pred CCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-
Confidence 44445555555666655667788999999998888754 5777888888888888888888888865433322
Q ss_pred cccccccccCcccccccccCCCCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHH-hhccCCCChHHHHHHHH
Q 004985 119 DSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAE-AKQTKTLDPAMLISLEN 197 (721)
Q Consensus 119 ~sl~~~~d~~~~~~~~~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~-~~~~~~~~~~~~~~i~~ 197 (721)
.-|.++..- +. . .+..+.++-+..+|+.+..||+-++|-+|-+++.++-..+.. +.... .+..++.
T Consensus 121 klw~~~~q~----K~--V--i~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~L~~VE-----gLs~l~~ 187 (982)
T KOG3691|consen 121 KLWAENSQY----KK--V--IEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGPLDGVE-----GLSDLRS 187 (982)
T ss_pred HHHHhhhhH----HH--H--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-----hhhHHHH
Confidence 112111100 00 0 012345677889999999999999999999999998877753 22211 4667888
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 004985 198 TIIDRRQKLADQLAEAACQ 216 (721)
Q Consensus 198 ki~er~~~L~~~L~~~l~~ 216 (721)
++.-+...|-+.|.+++.+
T Consensus 188 ele~~~~~L~~~L~eELv~ 206 (982)
T KOG3691|consen 188 ELEGLLSHLEDILIEELVS 206 (982)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887743
No 22
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=85.77 E-value=26 Score=38.22 Aligned_cols=124 Identities=16% Similarity=0.112 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCcccchhhhhccCCCCCCCcCCCcHHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHH
Q 004985 546 ISVDRLKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDELEWFPSLIFQELYAKLNRMA-SIAADMFVGRQRFATLL 624 (721)
Q Consensus 546 ~~~~~l~~~fc~~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~ps~~fq~lf~~l~~l~-~~~~~~~~g~e~~~~~l 624 (721)
...++-...-++.+|-+++-+.+. -|+|.. |.-=||.--+.|-.-|+.+= ++... +- ..+
T Consensus 143 ~~Ae~~I~~lv~~KIDe~lela~y--DW~~~~----------~~~~ps~yi~dli~fL~~~f~s~l~~-LP------~~v 203 (311)
T PF04091_consen 143 KAAEKRIFELVNSKIDEFLELAEY--DWTPTE----------PPGEPSDYINDLIQFLETTFSSTLTN-LP------PSV 203 (311)
T ss_dssp THHHHHHHHHHHHHHHHHHTT--T--T------------------S--HHHHHHHHHHHHHHHTTTTT-SH-------HH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc--ceecCC----------CCCCCCHHHHHHHHHHHHHHHHHHhc-CC------HHH
Confidence 445555567778888888844222 144321 11136665556655555553 21111 11 112
Q ss_pred HHHHHHHHHHHhcCCchhhhhh-hcCCcCCCccchhhhhhhHHHHHHHHhhC-----CCC---c--hhHHHHHHHHh
Q 004985 625 LMRLTETVILWLSEDQSFWDDI-EEGPKPLGPLGLQQFYLDMKFVICFASQG-----HYL---S--RNLHELSMRLY 690 (721)
Q Consensus 625 l~rl~e~v~~~ls~~~~~w~~~-e~~~~~~~~~glqq~~ldm~f~~~~a~~g-----~~~---s--~~~~~~~~~~~ 690 (721)
...+.-..+.+|| ..|++.+ .+..+.+.+.|++||-+|++|+..||..- +=. + ..++|+++=+.
T Consensus 204 ~~~~~~~a~~his--~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~ 278 (311)
T PF04091_consen 204 KQLVYFSACDHIS--ESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLL 278 (311)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHh
Confidence 2222333344455 4455542 35678889999999999999999999554 211 1 14677775554
No 23
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=85.23 E-value=22 Score=39.31 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=49.0
Q ss_pred ccccchhHHHHHHHHHHHHHhhcccccccchhHH-H-----------HHHHHHHHHHHHHHHHhCCCCchhhhhccCCcc
Q 004985 410 QHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKM-L-----------EGLFQVFNSYVSMLIKALPGSMEEEANFEGSGN 477 (721)
Q Consensus 410 ~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~-~-----------~~l~~lf~~yv~~l~~al~~~~~~~~~~e~~~~ 477 (721)
-..+|..+..|.+.+-++-+-+..+....-.+.- . +.-...|..|+..+|.+|-...+...
T Consensus 140 Vh~lT~~vm~yl~~L~~y~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ks------- 212 (371)
T PF03081_consen 140 VHPLTSYVMNYLKRLAEYRDTLESILQSDGDGNWLSESGPPSESSSSTDSQSSLSSYIADIISALESNLEAKS------- 212 (371)
T ss_dssp --HHHHHHHHHHHHHHCTHHHHHHCCCTT-GGGGS-SS--GGGS---CCHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHH-------
Confidence 3589999999999999998888888655422110 0 11334555555555555442111111
Q ss_pred chhhccccHHHHHHHHhhHHHHHHhH
Q 004985 478 KIVRMAENEAQQIALLANASLLADEL 503 (721)
Q Consensus 478 ~~v~~a~t~~qq~~ll~Na~~l~d~l 503 (721)
+..+ ..--+.+.++.|..||...+
T Consensus 213 ~~y~--d~~l~~iFLlNN~~yI~~~~ 236 (371)
T PF03081_consen 213 KSYK--DPALRYIFLLNNYHYILKKL 236 (371)
T ss_dssp CCHC--THHHHHHHHHHHHHHHHCCC
T ss_pred hccc--cHHHHHHHHHHHHHHHHHHh
Confidence 1111 11236677999999998544
No 24
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=73.89 E-value=1.2e+02 Score=35.77 Aligned_cols=383 Identities=15% Similarity=0.121 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHhcccccc--cccccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 004985 241 HSLLLNAHYQRYQYSMQSLRP--SSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLV 318 (721)
Q Consensus 241 ~~lfL~~rs~~L~~~ir~l~~--eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~~~~~~S~LV~Wa~~eie~f~~l~ 318 (721)
++.+++.=...++.++.+... .+......++..+. .++..+..+...-..+||..-..+.-++.|--..+..+..-+
T Consensus 79 r~~~~~~l~~sv~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~DL~~v~~~~~~cfPp~~~I~~~y~~~YH~~l~~~l~~l 157 (566)
T PF06046_consen 79 RQKFFEALRESVEERFEQAEEREENKSWLARHLEALR-WVLEDLQVVKDDVVPCFPPEYDIFNTYVSMYHNALSDHLQEL 157 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHH-HHHHHHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555553221 22221234788888 999999999999999999753334555555555555555543
Q ss_pred hHHhcCcccccCccHHHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHH------hcCC
Q 004985 319 KRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPS-VEQALDANLKRIEESTAAMA------AADD 391 (721)
Q Consensus 319 ~rqv~~~~~aa~~ls~~~ecv~ia~~~c~~L~~vGLdl~~lL~~ll~p~-ve~al~~~~~~i~e~i~~~~------~~d~ 391 (721)
. .+.-.+..+-.+..- .-.|...|...|+.....|.++|-+. +++.++.|..+++..++.-. ..++
T Consensus 158 ~----~~~l~~~~ll~ll~W---~~~Y~~~m~~~~l~~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~eW~~n~l~~E~~~ 230 (566)
T PF06046_consen 158 I----SPDLEANDLLSLLSW---VNTYPSIMGHPDLAIKEQLGPLLPDEKLEELEDDYLSRIQKKMKEWMDNILEQEVKD 230 (566)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c----cCCCCHHHHhhheec---hhhChHhhcCCcccchhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111222222222 33455688888887544555444444 46677788888877665422 2445
Q ss_pred ceecCCCCccccccccccccccchhHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHhCCCCchhhhh
Q 004985 392 WVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEAN 471 (721)
Q Consensus 392 W~~~~~~~~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~yv~~l~~al~~~~~~~~~ 471 (721)
|.-..+|. .. ....--|+...-+..|+.+-++-+..=.......-+++.+.....+|-+.+...+.....+-..
T Consensus 231 w~~~~~Pe----~~--~dg~y~t~~~~difqmi~qql~va~~~l~~~v~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 304 (566)
T PF06046_consen 231 WSEEKEPE----ED--EDGYYHTPLPVDIFQMINQQLDVASESLQGKVLQRVLEELANFLKSYQDAWQEFKEEHFKDRSS 304 (566)
T ss_dssp HHC-S--E----E---TTS-EE-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCCC----cC--CCCCeecCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77543442 11 1234567777888888888877773333333333444445556667766665554211000000
Q ss_pred c-cCCccchhhccccHHHHHHHHhhHHHHHHhHHHHHhhhhcCCccCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 004985 472 F-EGSGNKIVRMAENEAQQIALLANASLLADELLPRAAMKVSPLNQANYKDDPRRRHSDRQNRNPEQREWKRRLVISVDR 550 (721)
Q Consensus 472 ~-e~~~~~~v~~a~t~~qq~~ll~Na~~l~d~llp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (721)
. +..+. .-...--.|+++|+....+ .......++.+.. .+........=...+...++.
T Consensus 305 ~~~~~~~-----~~~~eyliA~~N~~~~~~~-~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 364 (566)
T PF06046_consen 305 VKPKENP-----PGYLEYLIAVANNCLRCRD-YVESLEQKFEEKV--------------SQKYMERISSDLEELMDGFDD 364 (566)
T ss_dssp HHHCC-------S-HHHHHHHHHHHHHHHHH-HHHHHHHHHHTTS---------------HHHHHHHHHHHCTTHHHHHH
T ss_pred ccccccc-----cchHHHHHHHhccHHHHHH-HHHHHHHhccccc--------------chHHHhhhhhhHHHHHHHHHH
Confidence 0 00000 1122344678888888876 3344444442210 000001111222345577777
Q ss_pred HHHHHHHHHHHHhhcccCCCcccchhhhhccCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 004985 551 LKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTE 630 (721)
Q Consensus 551 l~~~fc~~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~ps~~fq~lf~~l~~l~~~~~~~~~g~e~~~~~ll~rl~e 630 (721)
+..+.|+ ++++.|+.+ +.|..-.-+ .+.|+-+.+.+.+-..+..-.+=.... =+......|+.++.+
T Consensus 365 l~~~~~~-~L~~~if~D-----l~p~~~~Lf-----t~~W~~~~~~~~I~~Ti~dY~~d~~~~--l~~~~~~~l~~~~~~ 431 (566)
T PF06046_consen 365 LAKECCQ-YLLEEIFND-----LKPHFKKLF-----TKKWYSGEAVDTICATIEDYLQDFQHY--LRPPYFQELIEELHD 431 (566)
T ss_dssp HHHHHHH-HHHHHHHHC-----THHHHCTTT-----SGGGCTS-HHHHHHHHHHHHHHHHCCC--S-HHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHH-----hHHHHHHhC-----cCcCcCcchHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 7777555 555566642 333322112 377877766666655555433111111 223355567777755
Q ss_pred HHHH-HhcCCchhhhhhhcCC----cCCCccchhhhhhhHHHHHHHHhhCCCC
Q 004985 631 TVIL-WLSEDQSFWDDIEEGP----KPLGPLGLQQFYLDMKFVICFASQGHYL 678 (721)
Q Consensus 631 ~v~~-~ls~~~~~w~~~e~~~----~~~~~~glqq~~ldm~f~~~~a~~g~~~ 678 (721)
.+|. ||.- .+..+. ..-.+.+..++.-|.+=+..+- .+|.
T Consensus 432 ~~v~~Yl~~------l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F--~~~~ 476 (566)
T PF06046_consen 432 RVVKEYLRA------LMKKKIKFKNKEERKEAAERIRRDAEQLKSFF--SKLG 476 (566)
T ss_dssp HHHHHHHHG------GGG---------CCCCCHHHHHHHHHHHHHHH--HHHT
T ss_pred HHHHHHHHH------HHHhhhhcccHHHHHHHHHHHHHHHHHHHHHH--HHhc
Confidence 5554 5541 121111 2236789999999998777765 4444
No 25
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.10 E-value=2.3e+02 Score=34.69 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcc--ccccccccccC
Q 004985 51 EIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVH--IDSLKGSESFA 128 (721)
Q Consensus 51 ~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~lI~~Ls~~~~--l~sl~~~~d~~ 128 (721)
+....-.+|....+.-+.++++..=.||+.||.+-.|+..+.++..+|++.++..-.-++.....+. ...+...+-..
T Consensus 45 ~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~ 124 (800)
T KOG2176|consen 45 QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQS 124 (800)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666677778888889999999999999999999999999999988876666655433322 00111111000
Q ss_pred cccccccccCCCCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHH
Q 004985 129 SKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAE 180 (721)
Q Consensus 129 ~~~~~~~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~ 180 (721)
. +. .+-.+..+.---+.|+--.+.-.+.+++|=.|++.++..++..-+
T Consensus 125 r--ni--t~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~yL~ 172 (800)
T KOG2176|consen 125 R--NI--TEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKVYLP 172 (800)
T ss_pred h--hH--HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 0 00 000001112224567777888889999999999999998887643
No 26
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.56 E-value=3.2e+02 Score=32.97 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=40.3
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcccccccc
Q 004985 219 TRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSS 263 (721)
Q Consensus 219 ~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~ir~l~~eg 263 (721)
...+.++..+.-++.-|.+.+.+..|...|...+...+..|..++
T Consensus 190 ~v~~dLk~Ia~~mi~~gy~~eC~~~Y~~vrk~i~~e~l~~L~~e~ 234 (623)
T KOG2344|consen 190 DVMTDLKAIAQRMIAAGYEKECFKVYKSIRKSILDESLVNLGVEK 234 (623)
T ss_pred hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhcCeee
Confidence 345699999999999999999999999999999999999887666
No 27
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=56.61 E-value=4.7e+02 Score=32.34 Aligned_cols=198 Identities=17% Similarity=0.180 Sum_probs=107.9
Q ss_pred HHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcccccccccCCCCCchhhhhhh
Q 004985 71 RKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVE 150 (721)
Q Consensus 71 qknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~lI~~Ls~~~~l~sl~~~~d~~~~~~~~~~e~~e~~~~l~wl~e 150 (721)
-+.=-+||.+|-.+-+-.+.|+--+.+...++++|+.+.+.+....- . . .+++--.-
T Consensus 348 akldNQemkafKGiedRf~aLd~miaSC~rlvnEqKeLahgflAn~k-----e---------a---------ekikDan~ 404 (1424)
T KOG4572|consen 348 AKLDNQEMKAFKGIEDRFSALDFMIASCERLVNEQKELAHGFLANIK-----E---------A---------EKIKDANK 404 (1424)
T ss_pred HhhcchhhHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----h---------c---------cccccccc
Confidence 34445799999999999999999999999999999999999866543 0 0 01111122
Q ss_pred hhhhHHHHHHccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 004985 151 FPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISA 230 (721)
Q Consensus 151 lpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~l 230 (721)
+|+ +|.. +++-++--..+. ..+..++.+|++-++.++.-|.-++.-.- +..
T Consensus 405 LPd---ic~e------------Han~lliifeN~-----refldikqkcdqaKQEiakNLhtRlk~cc---------fqm 455 (1424)
T KOG4572|consen 405 LPD---ICEE------------HANCLLIIFENF-----REFLDIKQKCDQAKQEIAKNLHTRLKGCC---------FQM 455 (1424)
T ss_pred CCh---HHHH------------HHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHhhhhhhh---------eee
Confidence 332 3331 222222222221 14677999999999999999887774221 112
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHHhcccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHHHH
Q 004985 231 LKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQ 310 (721)
Q Consensus 231 L~rLG~~~~A~~lfL~~rs~~L~~~ir~l~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~~~~~~S~LV~Wa~~e 310 (721)
|-++..+.. -...|+...+.++.++.-+..-.+ .|..|--.++.++-.-+.. ..|..--++-..-...|..=-..-
T Consensus 456 l~adqdgek-~~allel~ieale~hmdiieaird-aP~lYclaVsEiVRRklfi--ke~eEWaga~skd~aqf~eaEekk 531 (1424)
T KOG4572|consen 456 LDADQDGEK-DIALLELKIEALEIHMDIIEAIRD-APILYCLAVSEIVRRKLFI--KELEEWAGAHSKDCAQFSEAEEKK 531 (1424)
T ss_pred hhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhHhhhhHHHHH
Confidence 222222221 122344445555554443321112 2467777777666554432 222222221110011222222233
Q ss_pred HHHHHHHHhHHhcC
Q 004985 311 TEAFAHLVKRHALA 324 (721)
Q Consensus 311 ie~f~~l~~rqv~~ 324 (721)
-+.|...|+++++.
T Consensus 532 REqfGk~fkKhFLh 545 (1424)
T KOG4572|consen 532 REQFGKKFKKHFLH 545 (1424)
T ss_pred HHHHHHHHHHHHHH
Confidence 56788888888653
No 28
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=50.39 E-value=4.1e+02 Score=29.86 Aligned_cols=116 Identities=20% Similarity=0.287 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcc
Q 004985 51 EIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASK 130 (721)
Q Consensus 51 ~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~lI~~Ls~~~~l~sl~~~~d~~~~ 130 (721)
++...+.++. ......++|+..-+|-..|-....|+.++|.+.....+.+++....+..++. .
T Consensus 64 ~l~a~~~q~~--~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is~-~-------------- 126 (391)
T COG2959 64 ELQALQQQLK--ALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATISG-S-------------- 126 (391)
T ss_pred HHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc-C--------------
Confidence 3333444443 2356678899899999999999999999999999999999998888887741 1
Q ss_pred cccccccCCCCCchhhhhhhhhhhH-----HHHHHccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Q 004985 131 NDLLNLENKEPSDLEKWSVEFPDLL-----DVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID 201 (721)
Q Consensus 131 ~~~~~~e~~e~~~~l~wl~elpdeL-----Dv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~e 201 (721)
+.-+|+..--|-| ..+...++.+-|+.+++.+...|....+. .+..++.+|..
T Consensus 127 ------------~~~dWllaEad~Ll~lA~rkL~l~~DV~TAv~lLk~aD~~La~~NdP------~l~~~R~Aia~ 184 (391)
T COG2959 127 ------------DRKDWLLAEADFLLKLAGRKLVLDQDVTTAVALLKSADARLAAMNDP------SLIAVRRAIAN 184 (391)
T ss_pred ------------ChhhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhccCc------hHHHHHHHHHH
Confidence 1125665444433 35666899999999999999999887553 35555554444
No 29
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=49.11 E-value=49 Score=32.60 Aligned_cols=62 Identities=27% Similarity=0.405 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 004985 50 KEIRQLCSYLLDLKRASAEEMRK-SVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEG 115 (721)
Q Consensus 50 ~~L~~~~~~L~~lk~~t~sdLqk-nVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~lI~~Ls~~ 115 (721)
++.++++.|+.+++ ++|.. +.-.+|.+..+.-+.+.+++.|+.++++..+..+..+......
T Consensus 40 ~~~~~l~~Ei~~l~----~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 40 KEQRQLRKEILQLK----RELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHH----HHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444 44444 6667999999999999999999999999999988887766443
No 30
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=48.10 E-value=76 Score=34.02 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=34.2
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHH
Q 004985 35 FDADVYVKSKCSLNEKEIRQLCSYLLDLKRASA------EEMRKSVYANYAAFIR 83 (721)
Q Consensus 35 Fdpe~YV~~ll~~~e~~L~~~~~~L~~lk~~t~------sdLqknVY~NY~~FI~ 83 (721)
=+||.|++.+= .-+--||+++++|.+-.+++. .+||...|+=...+|+
T Consensus 54 P~PEQYLTPLQ-QKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIE 107 (305)
T PF15290_consen 54 PNPEQYLTPLQ-QKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIE 107 (305)
T ss_pred CCHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 48999999874 345667788877776554443 4788888877777775
No 31
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.96 E-value=6.3e+02 Score=30.70 Aligned_cols=184 Identities=14% Similarity=0.144 Sum_probs=104.0
Q ss_pred hhhhhhHHHHHH----ccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC--C-----
Q 004985 149 VEFPDLLDVLLA----ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQ--P----- 217 (721)
Q Consensus 149 ~elpdeLDv~IA----er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~--~----- 217 (721)
.+....||.||- .-+|-+|-.++.|-+..|.+.- ..++.=+....+..++++.+.-.+ |
T Consensus 189 ~~~l~~ld~ci~~l~en~~fkd~~~Y~~k~kqcL~kA~----------~lik~y~~~vlkq~t~q~l~~~~~~~~~~~~~ 258 (733)
T KOG2604|consen 189 KEMLAKLDECIMFLEENPDFKDAPAYLGKYKQCLSKAL----------GLIKTYFTNVLKQTTSQVLKRSKNMNPHADLA 258 (733)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhccCCCCCCccchh
Confidence 345566666664 6677777777666666665422 122222222222333333222211 1
Q ss_pred --------CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhccccccccccc---------ccchHHhhHHHHHH
Q 004985 218 --------STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSY---------GGAYTAALSQLVFS 280 (721)
Q Consensus 218 --------s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~ir~l~~eg~~~---------~~~YI~~LS~~fFs 280 (721)
+.-+..++..+..+.+......-..++..++-...+.+++-+++.-+.. -..||...|..
T Consensus 259 ~sl~Y~kf~aaa~~~k~~i~eie~rs~~~e~~qlL~~~~~~Y~~qRl~ll~pvi~~~i~~~~~~~~~~s~~rsg~af--- 335 (733)
T KOG2604|consen 259 FSLFYVKFSAAAHKLKPVIEEIEKRSEKEEYDQILAECHQHYFQQRLRLLKPVIDYHIKEFFVKKDLCSLIRSGCAY--- 335 (733)
T ss_pred hhhhhhHHHHHHhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcchHHHHHHHHHH---
Confidence 0112377777788887777755577777777777777777766433211 12344333332
Q ss_pred HHHHHHHHHHHhcCCCCc-chhhhHHHHHHHHHHHHHHHhHHhcCcccccCccHHHHHHHHHHHHhhhhhhhc
Q 004985 281 AIAQAACDSLAIFGKETA-YTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEAR 352 (721)
Q Consensus 281 ~I~~t~~~f~~~F~~~~~-~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~ls~~~ecv~ia~~~c~~L~~v 352 (721)
+.+++.+-..+|.+--. -...+.+|-..+-..+.+.++-.+..- ...-.-|-.+++-|...|++.
T Consensus 336 -l~~~c~dE~kLf~Eff~~~~f~~~~~~~~lc~~lyd~~r~~ilh~------~~l~tL~e~~si~~~~~le~~ 401 (733)
T KOG2604|consen 336 -LQQTCADENKLFREFFIMGDFKLMHYLENLCQSLYDNSRPLILHE------KHLETLCEVCSILQSEQLEEH 401 (733)
T ss_pred -HHHHHhhHHHHHHhhcCCCchHHHHHHHHhchHhhcchhhHHHHH------HHHHHHHHHHHhhccHHHHHH
Confidence 33444454455544211 146888999999999888888877643 344566777777777777653
No 32
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=42.47 E-value=7.1e+02 Score=30.32 Aligned_cols=181 Identities=12% Similarity=0.068 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhCCCChHHHH
Q 004985 165 DEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAHS 242 (721)
Q Consensus 165 eeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~--s~~~~elr~aV~lL~rLG~~~~A~~ 242 (721)
.+|..++.+...+.+.....+ .+...+.++......+.+.|.+++... .-.....++.+..|..++.+..+.+
T Consensus 75 ~~~A~il~~L~~ls~~~~~~~-----~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i~ 149 (710)
T PF07393_consen 75 EEAAKILRNLLRLSKELSDIP-----GFEEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCID 149 (710)
T ss_pred HHHHHHHHHHHHHHHhcCCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 677778877777777663322 467788889999999999999988654 2335699999999999999999999
Q ss_pred HHHHHHHHHHH-Hhccc---cc--------ccccccccchHHhhHHHHHHHHHHHHHH----HHHhcCCCCcchhhhHHH
Q 004985 243 LLLNAHYQRYQ-YSMQS---LR--------PSSTSYGGAYTAALSQLVFSAIAQAACD----SLAIFGKETAYTSELVMW 306 (721)
Q Consensus 243 lfL~~rs~~L~-~~ir~---l~--------~eg~~~~~~YI~~LS~~fFs~I~~t~~~----f~~~F~~~~~~~S~LV~W 306 (721)
.|...|.-.+. ..+.. +. ..++..+...... -..+|..|..++.. -..+||+.......|+.-
T Consensus 150 ~fi~k~~~f~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~-l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fier 228 (710)
T PF07393_consen 150 FFINKHEFFIDEDQLDESNGFEDEEIWEKLSDPDSHPPINEES-LDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFIER 228 (710)
T ss_pred HHHHhChhhhhhhhhccccccchhHHHHhccCcccccccchHH-HHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 99998876662 12211 00 0011111122222 24466666655544 668998754444555544
Q ss_pred HHHH-HHHHHHHHhHHhcCcccccCccHHHHHHHHHHHHhhhhhhhc
Q 004985 307 ATRQ-TEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEAR 352 (721)
Q Consensus 307 a~~e-ie~f~~l~~rqv~~~~~aa~~ls~~~ecv~ia~~~c~~L~~v 352 (721)
+-++ +..|...+=......+ ...=+++...+-..+..-++.|.+.
T Consensus 229 vf~~~I~~~i~~lL~~a~~~s-~~~YLr~l~~~y~~t~~lv~~L~~~ 274 (710)
T PF07393_consen 229 VFEQVIQEYIESLLEEASSIS-TLAYLRTLHGLYSQTKKLVDDLKEF 274 (710)
T ss_pred HHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333 3343333222221110 0011444444444555566777776
No 33
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=41.07 E-value=2.3e+02 Score=30.32 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=48.1
Q ss_pred HHHHHHhHHhcCcccccCccHHHHHHHHHHHHh----hhhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 004985 313 AFAHLVKRHALASSAAAGGLRAAAECVQIALGH----CSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAA 388 (721)
Q Consensus 313 ~f~~l~~rqv~~~~~aa~~ls~~~ecv~ia~~~----c~~L~~vGLdl~~lL~~ll~p~ve~al~~~~~~i~e~i~~~~~ 388 (721)
.|-.++++++-.-. .-+.+|++.+... +..+....+.=-|.|...+...+.+.++.......+.|..++.
T Consensus 194 afe~Li~~~i~~l~------~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~ 267 (295)
T PF01031_consen 194 AFESLIRKQIEKLE------EPALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEMIENLID 267 (295)
T ss_dssp HHHHHHHHHHHTTH------HHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777773221 1123454444443 3333333344346788888888899999999999999999888
Q ss_pred cCC-ceec
Q 004985 389 ADD-WVLT 395 (721)
Q Consensus 389 ~d~-W~~~ 395 (721)
-+. +.-+
T Consensus 268 ~E~~~i~T 275 (295)
T PF01031_consen 268 MELSYINT 275 (295)
T ss_dssp HHTTS--T
T ss_pred HhcccCCC
Confidence 777 5433
No 34
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=40.82 E-value=7.2e+02 Score=29.90 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHh-ccccccccc------------ccccchHHhhHHHHHHHHHHHH
Q 004985 221 GAELRAAISALKK-LGDGPRAHSLLLNAHYQRYQYS-MQSLRPSST------------SYGGAYTAALSQLVFSAIAQAA 286 (721)
Q Consensus 221 ~~elr~aV~lL~r-LG~~~~A~~lfL~~rs~~L~~~-ir~l~~eg~------------~~~~~YI~~LS~~fFs~I~~t~ 286 (721)
...+++|+..|.. ..-.....+.|-.+|++.+-.. +.++...|. .||..||+.+=--+.+.++.=.
T Consensus 190 ~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~~~F~~aLt~g~~~~~~~rPIel~AhDP~RYvGDmLAwvHq~~a~E~ 269 (618)
T PF06419_consen 190 SPLLRRALRYLRERPVLFNYCLDEFAEARSKALLRRFLDALTRGGPGGSPSRPIELHAHDPLRYVGDMLAWVHQAIASER 269 (618)
T ss_pred chHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhhccChHHHHHHHHHHHHHHhhhHH
Confidence 5688999888854 2222457899999999998877 555543332 2788999999999999999888
Q ss_pred HHHHHhcCCC
Q 004985 287 CDSLAIFGKE 296 (721)
Q Consensus 287 ~~f~~~F~~~ 296 (721)
+-...+|...
T Consensus 270 E~l~~Lf~~~ 279 (618)
T PF06419_consen 270 EFLESLFKFD 279 (618)
T ss_pred HHHHHHhccc
Confidence 8889999875
No 35
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=40.37 E-value=1.8e+02 Score=28.53 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=19.1
Q ss_pred HHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 004985 75 YANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHG 111 (721)
Q Consensus 75 Y~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~lI~~ 111 (721)
+.||+.||.. ||..+.+.++.++.++..|..
T Consensus 66 ~~nyq~fI~~------Le~~I~q~~~~~~~~~~~ve~ 96 (148)
T COG2882 66 WQNYQQFISQ------LEVAIDQQQSQLSKLRKQVEQ 96 (148)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4699999976 555555555555555444443
No 36
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.51 E-value=1.2e+02 Score=26.20 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=33.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH----HHHHHHHHHHHHHHcCC
Q 004985 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTII----DRRQKLADQLAEAACQP 217 (721)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~----er~~~L~~~L~~~l~~~ 217 (721)
.++|++|.++|..+=..+..-+ ++..-..|+.++. +...+ ++.|...+..|
T Consensus 19 ~gny~eA~~lY~~ale~~~~ek-----n~~~k~~i~~K~~~~a~~yl~R-AE~Lk~~l~~~ 73 (75)
T cd02680 19 KGNAEEAIELYTEAVELCINTS-----NETMDQALQTKLKQLARQALDR-AEALKESMSKA 73 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHhc-----ChhhHHHHHHHHHHHHHHHHHH-HHHHHHHhccc
Confidence 6899999999998877776532 2334566777775 33333 55555555444
No 37
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=39.45 E-value=1.8e+02 Score=31.85 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcccccccccc------cccchHHhh
Q 004985 203 RQKLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTS------YGGAYTAAL 274 (721)
Q Consensus 203 ~~~L~~~L~~~l~~~--s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~ir~l~~eg~~------~~~~YI~~L 274 (721)
++.|...+.+.+... .-...++.+...+..-||..+.+.+.|-+.-...|....|.+..+... .+..|+..+
T Consensus 5 ~~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yic~~Ia~~ar~~~~~~~~~~~~~~~~~~~a~~l 84 (324)
T smart00762 5 RETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYICDIIADKARSLLNELAGASDDTRAAVFYADTL 84 (324)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHHHHHHHHHHHHHhhccccccccccccchHHHHH
Confidence 344555555555332 345779999999999999999999999887777776665555433221 246787777
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004985 275 SQLVFSAIAQAACDSLAI 292 (721)
Q Consensus 275 S~~fFs~I~~t~~~f~~~ 292 (721)
+.+ |-.|+.+++....+
T Consensus 85 t~L-fe~ia~ii~~h~~~ 101 (324)
T smart00762 85 THL-FENVATIIEQHQPV 101 (324)
T ss_pred HHH-HHHHHHHHHhccHH
Confidence 666 67777776665533
No 38
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=37.00 E-value=4e+02 Score=29.26 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcccccccc------cccccchHHhh
Q 004985 203 RQKLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSS------TSYGGAYTAAL 274 (721)
Q Consensus 203 ~~~L~~~L~~~l~~~--s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~ir~l~~eg------~~~~~~YI~~L 274 (721)
+..|.+.+.+.+... .-...++.+...+..-||..+.+.+.|-+.=...|....|..-... ...++.|...+
T Consensus 5 ~~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc~~i~~~~r~~~~~~~~~~~~~~~~~~~~~~l 84 (331)
T PF08318_consen 5 RESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLCDIIAEQSRKLLDSATSGSSDSRSPVFYADAL 84 (331)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHH
Confidence 344555555555332 3457799999999999999999999988776666655555432111 12334555555
Q ss_pred HHHHHHHHHHHHHH
Q 004985 275 SQLVFSAIAQAACD 288 (721)
Q Consensus 275 S~~fFs~I~~t~~~ 288 (721)
+. .|-.|+.++++
T Consensus 85 t~-LFe~ia~ii~~ 97 (331)
T PF08318_consen 85 TK-LFEHIATIIEQ 97 (331)
T ss_pred HH-HHHHHHHHHHH
Confidence 43 34555555544
No 39
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=34.79 E-value=65 Score=27.76 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCChH---HHHHH-HHH
Q 004985 198 TIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPR---AHSLL-LNA 247 (721)
Q Consensus 198 ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~---A~~lf-L~~ 247 (721)
++.+....|++-|.+-++...++..|-..++.+|.++|+..+ .++.| |..
T Consensus 3 R~~~i~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~G~~~E~~Ll~DvlGle~ 56 (74)
T PF04444_consen 3 RLKEIMARLVRHLHDFIREVDLTEDEWWAAVDFLNRVGQRNEFILLSDVLGLEH 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHTTHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCchhhhhhhhccch
Confidence 456667777777777777778899999999999999987554 37777 655
No 40
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=31.92 E-value=5.5e+02 Score=27.20 Aligned_cols=248 Identities=13% Similarity=0.082 Sum_probs=119.9
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCC
Q 004985 158 LLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDG 237 (721)
Q Consensus 158 ~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~ 237 (721)
...+++++-|..++.|++..+... +|.....+...+-..-..+.++ . .+......=++++..++-+.++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~------~~~~~~~La~~~yn~G~~l~~~---~-~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSL------DPDMAEELARVCYNIGKSLLSK---K-DKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcC------CcHHHHHHHHHHHHHHHHHHHc---C-CChHHHHHHHHHHHHHHHhhhhc
Confidence 357999999999999998887611 2222333444343332222221 0 01111122467777776554444
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcch-hhhHHHHH-HHHHHHH
Q 004985 238 PRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYT-SELVMWAT-RQTEAFA 315 (721)
Q Consensus 238 ~~A~~lfL~~rs~~L~~~ir~l~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~~~~~~-S~LV~Wa~-~eie~f~ 315 (721)
.+...-+..-|-..++...+.....++ ..|..+ ...+.+.-..-||+.|... =.+-.|.+ .-.+.+.
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~---~~~~~k--------a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~ 141 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDT---YESVEK--------ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYE 141 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCC---hHHHHH--------HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHH
Confidence 333333333333333333333322222 233333 2333444477888766422 33444444 2244555
Q ss_pred HHHhHHhcCcccccCccHHHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 004985 316 HLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLT 395 (721)
Q Consensus 316 ~l~~rqv~~~~~aa~~ls~~~ecv~ia~~~c~~L~~vGLdl~~lL~~ll~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~ 395 (721)
+.+.+=|.+......++..+..|+.....++..+ .+-.+.++|...+.|.-.+ .+...+..+. |...
T Consensus 142 ~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~--a~~~ld~~l~~r~~~~~~~-------~~e~~vl~~~----~~~~ 208 (278)
T PF08631_consen 142 EILMRMIRSVDHSESNFDSILHHIKQLAEKSPEL--AAFCLDYLLLNRFKSSEDQ-------WLEKLVLTRV----LLTT 208 (278)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHhhCcHH--HHHHHHHHHHHHhCCChhH-------HHHHHHHHHH----HHHc
Confidence 5666555544323377888888888888888643 2333333333333333111 1112222221 3322
Q ss_pred CCCCccccccccccccccchhHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHH
Q 004985 396 YPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSY 454 (721)
Q Consensus 396 ~~~~~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~y 454 (721)
.+.. ++ ...=.+.+.+|++.+......+|.......+.-|+=..
T Consensus 209 ~~~~-------------~~--~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~ 252 (278)
T PF08631_consen 209 QSKD-------------LS--SSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK 252 (278)
T ss_pred CCcc-------------cc--chhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 1110 00 01113456777777777777777777766665544333
No 41
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=31.78 E-value=1.2e+02 Score=27.48 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccCCccchhhccccHHHHHHHHhhHH
Q 004985 421 NLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANAS 497 (721)
Q Consensus 421 ~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~yv~~l~~al~~~~~~~~~~e~~~~~~v~~a~t~~qq~~ll~Na~ 497 (721)
+..+.+-+.++.++++.+ .+-+.|++..+.+ ++++++++.++ |..||.++|.|+-
T Consensus 19 ydAF~Q~l~~LP~la~S~---~~KD~I~q~m~~F---------------~dp~~G~pAF~----s~~QQ~~mlq~~l 73 (120)
T PRK15321 19 YDAFYQRLLALPESASSE---TLKDSIYQEMNAF---------------KDPNSGDSAFV----SFEQQTAMLQNML 73 (120)
T ss_pred HHHHHHHHHhCCcccCcH---HHHHHHHHHHHHh---------------CCCCCCCcccc----cHHHHHHHHHHHH
Confidence 334444455666665544 2226667776666 12334345554 6889999999874
No 42
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=26.70 E-value=3.6e+02 Score=23.04 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=35.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004985 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAA 214 (721)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l 214 (721)
.++|++|+.++..|=..+..+-... .++.....|+.++.+-..+ ++.|...+
T Consensus 19 ~g~y~eA~~lY~~ale~~~~~~k~e-~~~~~k~~lr~k~~eyl~R-AE~LK~~l 70 (75)
T cd02684 19 RGDAAAALSLYCSALQYFVPALHYE-TDAQRKEALRQKVLQYVSR-AEELKALI 70 (75)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 6899999999999988876643222 2555566788887776665 55555544
No 43
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=26.27 E-value=3.7e+02 Score=22.72 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=34.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004985 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAA 214 (721)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l 214 (721)
.++|++|+.++..|=..+..+-.... ++.....++.++.+-..+ ++.|...+
T Consensus 19 ~g~y~eA~~~Y~~aie~l~~~~k~e~-~~~~k~~~~~k~~eyl~R-aE~LK~~l 70 (75)
T cd02678 19 AGNYEEALRLYQHALEYFMHALKYEK-NPKSKESIRAKCTEYLDR-AEKLKEYL 70 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 78999999999999888866533221 444456677777765554 44444444
No 44
>PF11047 SopD: Salmonella outer protein D; InterPro: IPR022747 The proteins in this entry are also known as secreted effector proteins. Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. They contribute to the formation of Salmonella-induced filaments (Sifs) in infected epithelial cells and to replication in macrophages []. SopD is a type III virulence effector protein whose structure consists of 38% alpha-helix and 26% beta-strand [].; GO: 0009405 pathogenesis, 0033644 host cell membrane
Probab=26.00 E-value=1.1e+02 Score=32.83 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=17.8
Q ss_pred HHHHHHHHHHH---HHHHHHhhcc
Q 004985 546 ISVDRLKDTFC---RQHALDLIFT 566 (721)
Q Consensus 546 ~~~~~l~~~fc---~~~~~~~i~~ 566 (721)
..-||++|+|| .++|++-+|+
T Consensus 35 GlWDKfKD~FRseKK~EALe~LY~ 58 (319)
T PF11047_consen 35 GLWDKFKDWFRSEKKQEALEVLYD 58 (319)
T ss_pred hhHHHHHHHHhcccHHHHHHHHHH
Confidence 34589999999 7899999985
No 45
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=25.45 E-value=3.9e+02 Score=22.37 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=31.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH
Q 004985 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQK 205 (721)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er~~~ 205 (721)
.+++++|+.++.+|-..+...-... .++.....+..++.+-..+
T Consensus 21 ~g~~~eAl~~Y~~a~e~l~~~~~~~-~~~~~~~~~~~k~~eyl~r 64 (77)
T smart00745 21 AGDYEEALELYKKAIEYLLEGIKVE-SDSKRREAVKAKAAEYLDR 64 (77)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHH
Confidence 6899999999999988887654332 2444456677777665554
No 46
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.51 E-value=1e+02 Score=30.61 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=35.4
Q ss_pred cccCCcchhhhhcccCCCCCChHHHHHHhccCCHHHHHHHHHHHHHHH
Q 004985 16 AENGGAKIEEGLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLK 63 (721)
Q Consensus 16 ~~~~~~~~~~~~~~f~~~~Fdpe~YV~~ll~~~e~~L~~~~~~L~~lk 63 (721)
.+|++ +|..+++.=+=++|+|++-++++= ..+.|.+.++.|.+++
T Consensus 87 ~gdg~-~l~V~L~f~smdDFsP~~Va~qVp--~L~kLLeaR~~L~~L~ 131 (169)
T COG3516 87 TGDGT-ELAVDLTFESMDDFSPDAVARQVP--ELKKLLEARTALADLK 131 (169)
T ss_pred cCCCc-eeeeeeeecccccCCHHHHHHhhH--HHHHHHHHHHHHHHHh
Confidence 34555 777777777778999999998864 4578888899998887
No 47
>PRK15380 pathogenicity island 1 protein SopD2; Provisional
Probab=23.88 E-value=77 Score=33.52 Aligned_cols=58 Identities=29% Similarity=0.391 Sum_probs=33.9
Q ss_pred HHHHHHHHHH---HHHHHHhhcc-cCCCcccchhhhhccCCCCCCCc--CCCcHHHHHHHHHHHHHH-HHHHhhhh
Q 004985 547 SVDRLKDTFC---RQHALDLIFT-EDGDSHLNADMYLNMDGNVDELE--WFPSLIFQELYAKLNRMA-SIAADMFV 615 (721)
Q Consensus 547 ~~~~l~~~fc---~~~~~~~i~~-~~~~~~~~~~~y~~~~~~~~~~~--~~ps~~fq~lf~~l~~l~-~~~~~~~~ 615 (721)
.-||++|+|| .++||+.+|+ -+|-.+ ++..+.+ .-|.. =..-|.+|+|+| ....|.|+
T Consensus 36 ~WDR~KD~FrsekK~eALEvLy~lIhg~~R----------~~~~Em~Vdv~gm~-KIyAF~qL~qlA~Pa~QD~F~ 100 (319)
T PRK15380 36 VWDRFKDCFRTHKKQEVLEVLYTLIHGCER----------ENQAELNVDITGME-KIHAFTQLKQYANPSQQDRFV 100 (319)
T ss_pred hHHHHHHHHhcccHHHHHHHHHHHHccccc----------CCccccccccccHH-HHHHHHHHHHhcCccccceEE
Confidence 4589999999 7899999985 222111 1111111 11222 226788999998 44446554
No 48
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=23.78 E-value=3.9e+02 Score=22.95 Aligned_cols=41 Identities=37% Similarity=0.398 Sum_probs=28.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHh-hccCCCChHHHHHHHHHHHHHH
Q 004985 161 ERRIDEALTALDEGEHLAAEA-KQTKTLDPAMLISLENTIIDRR 203 (721)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~-~~~~~~~~~~~~~i~~ki~er~ 203 (721)
.++|++|+.++.++=..+..+ +..| ++.....++.++.+..
T Consensus 19 ~g~y~eAl~~Y~~aie~l~~~lk~e~--d~~~k~~~r~ki~eY~ 60 (77)
T cd02683 19 EGRFQEALVCYQEGIDLLMQVLKGTK--DEAKKKNLRQKISEYM 60 (77)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHH
Confidence 789999999999998888764 3333 4444566777766543
No 49
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=23.74 E-value=91 Score=22.25 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=15.9
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 004985 156 DVLLAERRIDEALTALDEGE 175 (721)
Q Consensus 156 Dv~IAer~feeAV~ll~k~~ 175 (721)
+++...++|++|+++++++=
T Consensus 7 ~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 7 RIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 46778999999999998854
No 50
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=23.31 E-value=9.9e+02 Score=29.40 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=61.6
Q ss_pred CCCCCChHHH-HHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 004985 31 KSDKFDADVY-VKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQAT 107 (721)
Q Consensus 31 ~~~~Fdpe~Y-V~~ll-~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~ 107 (721)
.++.|.|.-- |.+++ ..+..+|+++++.|.... +=...|..++-+.=+++=.+..+.+++...+..|..++...+.
T Consensus 244 ~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve-~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 244 KSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVE-REKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred CCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567877654 88888 999999999999999885 6667788888888889999999999888888888886555433
No 51
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=22.90 E-value=5.4e+02 Score=27.39 Aligned_cols=125 Identities=24% Similarity=0.312 Sum_probs=77.4
Q ss_pred cchHHhhHHHHHHHHHHHHHHHHHhc-CCCC-cchhhhHHHHHHHHHHHHHHHhHHhcCcccccCcc----HHHHHHHH-
Q 004985 268 GAYTAALSQLVFSAIAQAACDSLAIF-GKET-AYTSELVMWATRQTEAFAHLVKRHALASSAAAGGL----RAAAECVQ- 340 (721)
Q Consensus 268 ~~YI~~LS~~fFs~I~~t~~~f~~~F-~~~~-~~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~l----s~~~ecv~- 340 (721)
...+..++.+=|+.|-.+..- ..-| ++-| .+...++..|.+|...|.-+.+|- -.-...-|++ ..|.-|.+
T Consensus 68 ~~llHaiAhIE~~AIdLa~Da-~~RF~~~lP~~f~~D~~~va~dEarHf~ll~~rL-~~lG~~yGd~P~h~gLw~~~~~t 145 (253)
T PF04305_consen 68 AALLHAIAHIELNAIDLALDA-IYRFHPNLPREFYDDWLRVADDEARHFRLLRERL-EELGSDYGDLPAHDGLWEAAEQT 145 (253)
T ss_pred HHHHHHhcchHHHHHHHHHHH-HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCcchhhHHHHHHHHh
Confidence 355666777777777665443 3345 4444 367889999999998887776653 1111000111 11122211
Q ss_pred -------HHHHhhhhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhcCCceec
Q 004985 341 -------IALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRI-EESTAAMAAADDWVLT 395 (721)
Q Consensus 341 -------ia~~~c~~L~~vGLdl~~lL~~ll~p~ve~al~~~~~~i-~e~i~~~~~~d~W~~~ 395 (721)
.|.-| -.|+..|||..+-+..-|+..=......-++.| .|.|.|...-.+|-..
T Consensus 146 ~~dl~~R~A~vp-~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~~ 207 (253)
T PF04305_consen 146 AHDLLARMALVP-RVLEARGLDVTPFIIEKFRSAGDEESAAILEIILRDEIGHVAIGNRWFRY 207 (253)
T ss_pred ccCHHHHHHHHH-HHHHhhCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 22222 257899999999998888855444444445555 8999999999999866
No 52
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=22.84 E-value=4.5e+02 Score=21.93 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=33.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004985 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAA 214 (721)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l 214 (721)
.++|++|+.++..|=..+..+-... .++.....++.++.+-..+ ++.|...+
T Consensus 19 ~g~~~~Al~~Y~~a~e~l~~~~~~~-~~~~~k~~l~~k~~~yl~R-aE~Lk~~l 70 (75)
T cd02656 19 DGNYEEALELYKEALDYLLQALKAE-KEPKLRKLLRKKVKEYLDR-AEFLKELL 70 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4899999999999988887654322 2344456677777665554 44444433
No 53
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=22.65 E-value=3.8e+02 Score=22.02 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=26.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Q 004985 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID 201 (721)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~ki~e 201 (721)
.++|++|++++.+|=..+...-.... ++..-..++.++.+
T Consensus 18 ~g~~~~A~~~Y~~ai~~l~~~~~~~~-~~~~~~~l~~k~~~ 57 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYLMQALKSES-NPERRQALRQKMKE 57 (69)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHST-THHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHH
Confidence 78999999999999888866433221 23233445555554
No 54
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=22.53 E-value=1.4e+03 Score=27.56 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=52.8
Q ss_pred cccccchhHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccCCccchhhccccHHH
Q 004985 409 LQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQ 488 (721)
Q Consensus 409 ~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~yv~~l~~al~~~~~~~~~~e~~~~~~v~~a~t~~q 488 (721)
..|..|.|+..|+.++.+.+++++-=-.-+-...+-.....+|.-|+.. .|. +.-..=++.+|
T Consensus 432 prC~vSeSa~~fvnL~~~tL~~at~ss~dq~a~~la~~arni~hly~~v----VP~-------------khrell~siPq 494 (719)
T KOG2163|consen 432 PRCTVSESAINFVNLLRDTLKAATASSDDQAAAKLALTARNIVHLYVIV----VPR-------------KHRELLSSIPQ 494 (719)
T ss_pred cceeecHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH----hhH-------------HHHHHHHhcch
Confidence 5789999999999999999999876544444445555667777777654 341 11111146778
Q ss_pred HHHHH-hhHHHHHH
Q 004985 489 QIALL-ANASLLAD 501 (721)
Q Consensus 489 q~~ll-~Na~~l~d 501 (721)
|-+|. .|+.|+.+
T Consensus 495 ~AaifhNNCmyi~h 508 (719)
T KOG2163|consen 495 MAAIFHNNCMYISH 508 (719)
T ss_pred HHHHHhcccHHHHH
Confidence 88854 77999986
No 55
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=22.29 E-value=1.4e+03 Score=28.54 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcc
Q 004985 51 EIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASK 130 (721)
Q Consensus 51 ~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLseq~~lI~~Ls~~~~l~sl~~~~d~~~~ 130 (721)
+|-.-+.+|....+++.+.|+.+ ||+ .+++.=|.+|+.=+.+.+..+..-...-. +....
T Consensus 466 ~ls~A~~~Lr~AQe~L~eAL~~g----------As~--eEI~rLm~eLR~A~~~ym~~LAeq~~~~~--------~~~~~ 525 (820)
T PF13779_consen 466 DLSDAERRLRAAQEALREALERG----------ASD--EEIARLMQELREAMQDYMQALAEQAQRNP--------QQQDQ 525 (820)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC----------CCH--HHHHHHHHHHHHHHHHHHHHHHHHhHhCc--------ccccC
Confidence 44456677777777777777752 444 34445566666666665555443322111 10000
Q ss_pred cccccccCCCCCchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHHhhcc
Q 004985 131 NDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQT 184 (721)
Q Consensus 131 ~~~~~~e~~e~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~ 184 (721)
+.. ......-..+-|..+.+.+.-+..+++.++|-++++..+.++..+...
T Consensus 526 p~~---~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq~~ 576 (820)
T PF13779_consen 526 PPD---QGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQNA 576 (820)
T ss_pred ccc---chhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence 000 000011235678999999999999999999999999999999988654
No 56
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=21.98 E-value=3e+02 Score=23.80 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=28.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHh--hccCCCChHHHHHHHHHHHHHH
Q 004985 161 ERRIDEALTALDEGEHLAAEA--KQTKTLDPAMLISLENTIIDRR 203 (721)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~--~~~~~~~~~~~~~i~~ki~er~ 203 (721)
.++|++|+.++.++=.++... ...+ ++.....|..++.+-.
T Consensus 19 ~g~y~eA~~~Y~~aie~l~~~~~~~~~--n~~~k~~ir~K~~eYl 61 (76)
T cd02681 19 EGRYSEAVFYYKEAAQLLIYAEMAGTL--NDSHLKTIQEKSNEYL 61 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHH
Confidence 799999999999998888663 2222 3334566777776543
No 57
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=20.66 E-value=1.7e+02 Score=21.91 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=21.1
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHHHh
Q 004985 156 DVLLAERRIDEALTALDEGEHLAAEA 181 (721)
Q Consensus 156 Dv~IAer~feeAV~ll~k~~~~L~~~ 181 (721)
|+.+...+|++|++.+.++=++..++
T Consensus 9 eisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 9 EISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 57788999999999998887666544
No 58
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=20.48 E-value=5.4e+02 Score=22.03 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHh-hccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 004985 161 ERRIDEALTALDEGEHLAAEA-KQTKTLDPAMLISLENTIIDRRQKLADQLAEAAC 215 (721)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~-~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~ 215 (721)
.++|++|+.++..|=..+... +.. .++..-..++.|+.+-..+-.+.+...+.
T Consensus 19 ~~~y~eA~~~Y~~~i~~~~~~~k~e--~~~~~k~~ir~K~~eYl~RAE~i~~~~l~ 72 (75)
T cd02677 19 EGDYEAAFEFYRAGVDLLLKGVQGD--SSPERREAVKRKIAEYLKRAEEILRLHLS 72 (75)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 589999999999998887653 332 24555677888887776665555554443
No 59
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=20.29 E-value=1.6e+02 Score=25.44 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=29.8
Q ss_pred hcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004985 351 ARGLALCPVLIKLFRPSVEQALDANLKRIEESTA 384 (721)
Q Consensus 351 ~vGLdl~~lL~~ll~p~ve~al~~~~~~i~e~i~ 384 (721)
..|..+-.+...+|||-+++=|+.|+-.+.|.+.
T Consensus 30 ~~~~TlE~lvremLRPmLkeWLD~nLP~lVErlV 63 (73)
T PF10691_consen 30 SSGRTLEDLVREMLRPMLKEWLDENLPGLVERLV 63 (73)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4688999999999999999999999988877654
Done!