Query 004992
Match_columns 720
No_of_seqs 536 out of 4147
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 16:17:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.8E-36 4E-41 349.5 45.7 450 56-523 188-766 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.3E-34 2.9E-39 334.2 45.5 459 55-523 229-813 (2102)
3 KOG0166 Karyopherin (importin) 100.0 3E-36 6.6E-41 303.3 26.2 325 57-406 109-436 (514)
4 KOG0166 Karyopherin (importin) 100.0 1.7E-34 3.8E-39 290.7 33.1 441 20-521 29-486 (514)
5 COG5064 SRP1 Karyopherin (impo 100.0 8.1E-35 1.8E-39 269.5 21.7 329 55-406 112-443 (526)
6 COG5064 SRP1 Karyopherin (impo 100.0 2.9E-34 6.4E-39 265.8 25.1 447 26-530 38-505 (526)
7 KOG4224 Armadillo repeat prote 100.0 6.2E-33 1.4E-37 259.3 21.7 400 59-523 87-495 (550)
8 KOG4224 Armadillo repeat prote 100.0 2.5E-33 5.4E-38 262.0 18.2 379 103-541 84-466 (550)
9 PHA02713 hypothetical protein; 99.9 1.6E-25 3.5E-30 242.1 17.0 157 544-702 17-175 (557)
10 PF05804 KAP: Kinesin-associat 99.9 2E-22 4.4E-27 216.1 38.2 379 79-523 265-651 (708)
11 KOG4441 Proteins containing BT 99.9 1.7E-24 3.6E-29 232.7 16.2 156 544-699 28-183 (571)
12 PHA02790 Kelch-like protein; P 99.9 7.1E-25 1.5E-29 234.0 13.2 149 545-695 15-167 (480)
13 PHA03098 kelch-like protein; P 99.9 2.4E-24 5.3E-29 236.1 16.9 151 548-702 5-157 (534)
14 PF05804 KAP: Kinesin-associat 99.9 2.4E-21 5.2E-26 207.8 34.3 357 57-483 290-652 (708)
15 KOG4350 Uncharacterized conser 99.9 3.8E-24 8.2E-29 202.6 10.2 161 544-704 36-199 (620)
16 KOG4199 Uncharacterized conser 99.9 3.6E-19 7.9E-24 165.9 30.9 403 14-485 22-449 (461)
17 KOG4500 Rho/Rac GTPase guanine 99.8 5.7E-18 1.2E-22 163.0 25.7 424 79-522 58-520 (604)
18 KOG4591 Uncharacterized conser 99.8 2.2E-19 4.9E-24 153.6 10.2 158 542-703 56-218 (280)
19 KOG2122 Beta-catenin-binding p 99.8 1.6E-17 3.4E-22 180.5 25.4 360 80-482 211-603 (2195)
20 KOG2075 Topoisomerase TOP1-int 99.8 8.1E-18 1.8E-22 164.6 14.8 162 545-707 107-274 (521)
21 KOG1048 Neural adherens juncti 99.8 1.1E-16 2.4E-21 167.5 23.9 362 106-523 235-686 (717)
22 KOG2122 Beta-catenin-binding p 99.8 1.2E-16 2.6E-21 173.7 23.2 350 52-410 230-605 (2195)
23 KOG1048 Neural adherens juncti 99.7 1.5E-16 3.2E-21 166.6 22.5 375 58-496 234-700 (717)
24 PF00651 BTB: BTB/POZ domain; 99.7 1.4E-17 3E-22 141.3 9.4 106 544-649 2-110 (111)
25 KOG4199 Uncharacterized conser 99.7 1.8E-14 3.9E-19 134.9 29.1 312 75-412 119-450 (461)
26 PF10508 Proteasom_PSMB: Prote 99.7 3.8E-14 8.2E-19 151.7 35.4 396 76-522 51-463 (503)
27 KOG0783 Uncharacterized conser 99.7 2.3E-17 5.1E-22 170.1 9.7 162 550-711 708-876 (1267)
28 KOG4682 Uncharacterized conser 99.7 5.6E-17 1.2E-21 154.6 11.3 156 541-697 58-217 (488)
29 PF10508 Proteasom_PSMB: Prote 99.7 3E-14 6.4E-19 152.5 30.7 367 109-530 43-429 (503)
30 KOG0211 Protein phosphatase 2A 99.7 2.3E-15 4.9E-20 162.3 21.0 430 13-523 234-666 (759)
31 KOG4500 Rho/Rac GTPase guanine 99.6 5.5E-13 1.2E-17 129.1 26.3 350 131-521 57-431 (604)
32 smart00225 BTB Broad-Complex, 99.6 3.1E-15 6.7E-20 121.6 9.1 90 554-643 1-90 (90)
33 KOG1222 Kinesin associated pro 99.6 1.3E-12 2.8E-17 128.2 24.7 362 55-483 298-666 (791)
34 PRK13800 putative oxidoreducta 99.6 9.2E-13 2E-17 151.6 28.1 276 103-517 620-895 (897)
35 KOG1222 Kinesin associated pro 99.6 4.3E-12 9.4E-17 124.5 27.7 403 52-523 255-665 (791)
36 PRK09687 putative lyase; Provi 99.5 7E-13 1.5E-17 130.0 20.7 255 157-518 23-279 (280)
37 KOG2171 Karyopherin (importin) 99.5 1.3E-12 2.9E-17 142.2 24.4 434 14-514 77-539 (1075)
38 PRK09687 putative lyase; Provi 99.5 1.9E-12 4.2E-17 126.9 21.3 254 58-403 24-279 (280)
39 KOG1293 Proteins containing ar 99.5 5.5E-12 1.2E-16 129.2 23.9 395 76-522 22-534 (678)
40 KOG2171 Karyopherin (importin) 99.5 8.1E-10 1.8E-14 121.0 41.9 454 49-523 194-715 (1075)
41 PRK13800 putative oxidoreducta 99.5 1.1E-11 2.4E-16 142.8 28.4 264 75-477 633-896 (897)
42 PF04826 Arm_2: Armadillo-like 99.5 6.9E-12 1.5E-16 119.9 21.5 192 58-278 13-205 (254)
43 PF04826 Arm_2: Armadillo-like 99.5 6E-12 1.3E-16 120.3 19.5 194 101-320 9-205 (254)
44 KOG2023 Nuclear transport rece 99.4 2.3E-11 4.9E-16 124.2 19.3 352 104-520 128-548 (885)
45 KOG2023 Nuclear transport rece 99.4 1.2E-10 2.6E-15 119.0 23.2 340 29-406 100-505 (885)
46 KOG0168 Putative ubiquitin fus 99.3 5.5E-10 1.2E-14 117.3 25.4 259 58-344 168-437 (1051)
47 cd00256 VATPase_H VATPase_H, r 99.3 7.5E-10 1.6E-14 112.8 25.6 349 157-522 53-426 (429)
48 cd00020 ARM Armadillo/beta-cat 99.3 4.3E-11 9.2E-16 103.1 14.3 117 203-319 3-119 (120)
49 PF01602 Adaptin_N: Adaptin N 99.3 1.9E-10 4.2E-15 126.9 22.2 400 62-523 80-485 (526)
50 cd00020 ARM Armadillo/beta-cat 99.3 5.2E-11 1.1E-15 102.6 13.9 119 244-362 2-120 (120)
51 PF01602 Adaptin_N: Adaptin N 99.3 5.7E-10 1.2E-14 123.2 24.9 350 76-522 55-407 (526)
52 cd00256 VATPase_H VATPase_H, r 99.3 3.2E-09 6.9E-14 108.3 27.2 321 57-405 53-424 (429)
53 KOG2160 Armadillo/beta-catenin 99.2 1.2E-09 2.6E-14 105.7 19.6 190 70-278 90-282 (342)
54 KOG1241 Karyopherin (importin) 99.2 6.3E-08 1.4E-12 101.3 31.4 404 59-524 33-480 (859)
55 PTZ00429 beta-adaptin; Provisi 99.1 5.9E-08 1.3E-12 107.0 31.0 352 76-522 81-434 (746)
56 KOG1241 Karyopherin (importin) 99.1 3.2E-08 7E-13 103.4 25.9 432 44-523 155-628 (859)
57 KOG1293 Proteins containing ar 99.1 4E-09 8.7E-14 108.6 18.9 339 90-482 167-535 (678)
58 PTZ00429 beta-adaptin; Provisi 99.1 1.3E-07 2.7E-12 104.4 30.0 362 104-523 32-399 (746)
59 KOG0946 ER-Golgi vesicle-tethe 99.0 1.7E-07 3.7E-12 98.4 27.2 292 105-416 23-357 (970)
60 KOG0168 Putative ubiquitin fus 99.0 3.2E-08 6.9E-13 104.5 20.0 221 53-302 207-437 (1051)
61 KOG2160 Armadillo/beta-catenin 99.0 3.6E-08 7.8E-13 95.6 18.7 184 129-320 96-282 (342)
62 KOG3678 SARM protein (with ste 99.0 2.6E-08 5.7E-13 98.0 17.9 274 201-523 174-454 (832)
63 KOG2759 Vacuolar H+-ATPase V1 99.0 3.6E-07 7.8E-12 89.8 25.1 351 158-523 66-440 (442)
64 KOG2759 Vacuolar H+-ATPase V1 99.0 2.3E-07 5E-12 91.1 23.6 320 58-406 66-438 (442)
65 KOG0946 ER-Golgi vesicle-tethe 99.0 5.7E-07 1.2E-11 94.6 27.3 337 52-416 17-410 (970)
66 KOG0511 Ankyrin repeat protein 98.9 9.2E-09 2E-13 98.2 10.2 140 562-702 301-450 (516)
67 PF03224 V-ATPase_H_N: V-ATPas 98.9 3.7E-08 7.9E-13 99.6 15.3 225 251-512 57-305 (312)
68 KOG0211 Protein phosphatase 2A 98.9 8.9E-07 1.9E-11 96.7 26.6 472 12-522 117-626 (759)
69 KOG0212 Uncharacterized conser 98.9 5E-08 1.1E-12 98.6 15.2 357 103-522 83-445 (675)
70 KOG1062 Vesicle coat complex A 98.9 3.9E-06 8.4E-11 89.0 29.0 404 62-523 108-546 (866)
71 KOG1517 Guanine nucleotide bin 98.9 4.2E-08 9.2E-13 105.7 14.7 265 38-327 453-739 (1387)
72 COG5215 KAP95 Karyopherin (imp 98.8 3.5E-06 7.6E-11 85.6 27.1 432 62-523 177-670 (858)
73 KOG3678 SARM protein (with ste 98.8 2.8E-07 6E-12 91.0 18.9 280 96-407 172-453 (832)
74 KOG0212 Uncharacterized conser 98.8 5E-07 1.1E-11 91.6 19.9 322 155-526 82-411 (675)
75 KOG4413 26S proteasome regulat 98.8 1.1E-06 2.3E-11 83.2 20.4 308 181-523 59-379 (524)
76 KOG0213 Splicing factor 3b, su 98.8 2.2E-06 4.8E-11 89.5 23.7 254 256-523 806-1067(1172)
77 KOG1242 Protein containing ada 98.8 2.3E-06 5E-11 88.7 23.9 345 105-524 97-447 (569)
78 KOG1824 TATA-binding protein-i 98.8 4.6E-06 1E-10 89.6 26.0 419 57-525 568-1040(1233)
79 PF03224 V-ATPase_H_N: V-ATPas 98.7 3.5E-07 7.7E-12 92.5 16.6 214 76-308 70-302 (312)
80 KOG2973 Uncharacterized conser 98.7 9.7E-07 2.1E-11 83.1 17.8 298 210-526 6-320 (353)
81 COG5215 KAP95 Karyopherin (imp 98.7 1.2E-05 2.7E-10 81.8 25.9 429 72-523 230-713 (858)
82 KOG4413 26S proteasome regulat 98.7 2.2E-05 4.8E-10 74.5 25.2 338 131-496 97-456 (524)
83 KOG1059 Vesicle coat complex A 98.6 3.9E-05 8.4E-10 80.5 26.8 218 55-320 179-401 (877)
84 TIGR02270 conserved hypothetic 98.6 1.2E-05 2.7E-10 83.0 22.9 242 158-521 55-296 (410)
85 KOG1242 Protein containing ada 98.5 8.6E-06 1.9E-10 84.6 19.7 333 29-406 106-444 (569)
86 KOG1517 Guanine nucleotide bin 98.5 3E-06 6.4E-11 91.9 16.1 223 132-362 486-732 (1387)
87 KOG0213 Splicing factor 3b, su 98.5 1.8E-05 3.8E-10 83.0 20.9 325 106-478 801-1140(1172)
88 KOG1060 Vesicle coat complex A 98.5 9.3E-05 2E-09 78.5 25.6 359 108-523 39-460 (968)
89 PF05536 Neurochondrin: Neuroc 98.5 0.00031 6.7E-09 75.9 30.2 201 58-280 6-215 (543)
90 KOG2973 Uncharacterized conser 98.4 7.7E-05 1.7E-09 70.6 21.7 272 107-409 6-318 (353)
91 PF14664 RICTOR_N: Rapamycin-i 98.4 0.00017 3.7E-09 73.8 26.2 245 145-407 13-270 (371)
92 KOG1824 TATA-binding protein-i 98.4 9.5E-05 2.1E-09 79.9 24.8 434 54-521 428-886 (1233)
93 KOG1059 Vesicle coat complex A 98.4 7E-05 1.5E-09 78.7 23.0 231 139-406 129-365 (877)
94 KOG1240 Protein kinase contain 98.4 8.2E-06 1.8E-10 90.1 16.9 282 79-407 439-726 (1431)
95 KOG1062 Vesicle coat complex A 98.4 0.00012 2.7E-09 78.0 24.6 273 131-481 122-415 (866)
96 TIGR02270 conserved hypothetic 98.3 0.00012 2.5E-09 75.9 21.9 212 106-409 88-299 (410)
97 KOG1061 Vesicle coat complex A 98.3 4.2E-05 9.2E-10 81.4 18.8 351 132-523 30-417 (734)
98 COG5181 HSH155 U2 snRNP splice 98.3 1.6E-05 3.5E-10 81.6 15.0 324 105-476 605-943 (975)
99 COG5240 SEC21 Vesicle coat com 98.3 0.0011 2.4E-08 68.1 27.2 334 129-522 203-556 (898)
100 KOG4646 Uncharacterized conser 98.3 7E-06 1.5E-10 67.3 9.4 136 158-302 17-152 (173)
101 COG5369 Uncharacterized conser 98.3 1.4E-05 3E-10 80.8 13.0 309 134-478 407-739 (743)
102 KOG2838 Uncharacterized conser 98.2 2.4E-06 5.3E-11 78.2 6.3 143 504-656 197-394 (401)
103 COG5369 Uncharacterized conser 98.2 2.6E-05 5.5E-10 79.0 13.6 295 224-519 406-739 (743)
104 KOG4646 Uncharacterized conser 98.2 1.7E-05 3.7E-10 65.1 9.6 136 54-214 13-148 (173)
105 PF05536 Neurochondrin: Neuroc 98.2 0.0034 7.4E-08 68.0 30.2 242 106-363 7-262 (543)
106 KOG0783 Uncharacterized conser 98.2 1.8E-06 3.8E-11 91.2 4.7 68 550-617 556-635 (1267)
107 KOG2734 Uncharacterized conser 98.1 0.00058 1.2E-08 68.0 21.2 233 185-422 104-365 (536)
108 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00048 1E-08 70.5 20.6 188 190-386 8-197 (371)
109 COG5181 HSH155 U2 snRNP splice 98.1 1.7E-05 3.7E-10 81.4 9.8 265 209-523 606-872 (975)
110 COG1413 FOG: HEAT repeat [Ener 98.1 0.00076 1.7E-08 69.5 22.1 187 157-406 43-242 (335)
111 KOG1060 Vesicle coat complex A 98.1 0.00069 1.5E-08 72.2 21.3 310 160-523 38-352 (968)
112 KOG2259 Uncharacterized conser 98.1 0.00022 4.9E-09 74.3 17.3 253 162-480 203-475 (823)
113 KOG2734 Uncharacterized conser 98.1 0.001 2.2E-08 66.3 21.0 238 228-502 105-371 (536)
114 COG5240 SEC21 Vesicle coat com 98.1 0.0021 4.5E-08 66.1 23.8 309 80-482 244-557 (898)
115 KOG1061 Vesicle coat complex A 98.0 0.0002 4.3E-09 76.5 17.3 265 51-362 43-308 (734)
116 COG1413 FOG: HEAT repeat [Ener 98.0 0.0022 4.9E-08 66.1 25.2 214 104-402 43-269 (335)
117 KOG1789 Endocytosis protein RM 98.0 0.0017 3.7E-08 71.3 23.3 292 75-389 1784-2142(2235)
118 PF12348 CLASP_N: CLASP N term 98.0 3.5E-05 7.5E-10 74.5 10.0 183 301-524 17-209 (228)
119 KOG1789 Endocytosis protein RM 98.0 0.0057 1.2E-07 67.4 26.2 303 79-406 1741-2116(2235)
120 KOG2259 Uncharacterized conser 97.9 0.00015 3.3E-09 75.5 13.6 220 159-405 236-474 (823)
121 KOG1240 Protein kinase contain 97.9 0.00028 6.2E-09 78.5 16.4 285 131-481 438-726 (1431)
122 KOG0915 Uncharacterized conser 97.9 0.0015 3.3E-08 74.7 21.7 324 180-523 972-1308(1702)
123 PF10165 Ric8: Guanine nucleot 97.9 0.0004 8.6E-09 73.5 16.5 276 188-483 4-340 (446)
124 PF00514 Arm: Armadillo/beta-c 97.9 2.2E-05 4.8E-10 51.9 4.5 40 238-277 1-40 (41)
125 KOG2716 Polymerase delta-inter 97.9 7.7E-05 1.7E-09 69.0 9.5 94 555-649 7-104 (230)
126 KOG1077 Vesicle coat complex A 97.9 0.0016 3.5E-08 68.6 19.8 271 131-428 126-418 (938)
127 PF10165 Ric8: Guanine nucleot 97.8 0.0024 5.1E-08 67.7 20.3 274 84-362 2-337 (446)
128 COG5231 VMA13 Vacuolar H+-ATPa 97.8 0.0023 5E-08 61.1 17.5 263 256-523 156-430 (432)
129 PF12348 CLASP_N: CLASP N term 97.8 0.00046 1E-08 66.7 13.5 179 178-362 20-206 (228)
130 KOG1943 Beta-tubulin folding c 97.7 0.051 1.1E-06 60.8 29.3 257 249-521 341-611 (1133)
131 PF00514 Arm: Armadillo/beta-c 97.7 4.8E-05 1E-09 50.3 3.8 40 93-144 1-40 (41)
132 PF12460 MMS19_C: RNAPII trans 97.7 0.0078 1.7E-07 63.7 22.1 366 106-523 1-396 (415)
133 KOG1077 Vesicle coat complex A 97.7 0.01 2.3E-07 62.8 21.5 105 209-323 113-219 (938)
134 PF13646 HEAT_2: HEAT repeats; 97.6 0.00015 3.2E-09 57.9 6.7 86 209-316 1-88 (88)
135 KOG0915 Uncharacterized conser 97.6 0.012 2.6E-07 67.9 23.5 407 52-523 989-1429(1702)
136 KOG0567 HEAT repeat-containing 97.6 0.0046 1E-07 57.7 16.9 195 206-478 66-278 (289)
137 KOG1943 Beta-tubulin folding c 97.6 0.017 3.7E-07 64.4 23.8 260 104-406 341-611 (1133)
138 KOG4535 HEAT and armadillo rep 97.6 0.0042 9E-08 62.7 17.2 307 179-520 269-602 (728)
139 COG5096 Vesicle coat complex, 97.6 0.061 1.3E-06 59.3 27.5 161 131-320 35-195 (757)
140 PF02214 BTB_2: BTB/POZ domain 97.6 0.00017 3.7E-09 58.3 6.2 87 555-642 1-94 (94)
141 PF13646 HEAT_2: HEAT repeats; 97.5 0.00034 7.3E-09 55.9 7.1 86 293-402 1-88 (88)
142 KOG2838 Uncharacterized conser 97.5 0.00017 3.7E-09 66.4 5.5 91 546-636 124-219 (401)
143 KOG1987 Speckle-type POZ prote 97.5 0.00012 2.6E-09 74.0 4.7 133 561-693 109-246 (297)
144 PF09759 Atx10homo_assoc: Spin 97.5 0.00059 1.3E-08 54.6 7.5 67 181-247 2-70 (102)
145 COG5231 VMA13 Vacuolar H+-ATPa 97.5 0.0068 1.5E-07 58.0 15.6 227 76-319 162-427 (432)
146 PF07707 BACK: BTB And C-termi 97.4 0.00028 6.1E-09 58.3 6.0 50 655-704 1-50 (103)
147 KOG1078 Vesicle coat complex C 97.4 0.025 5.4E-07 60.9 20.9 275 208-521 246-532 (865)
148 KOG0567 HEAT repeat-containing 97.4 0.018 3.8E-07 54.0 17.2 225 209-521 38-280 (289)
149 KOG1991 Nuclear transport rece 97.4 0.097 2.1E-06 58.2 25.3 263 75-362 430-711 (1010)
150 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00041 8.9E-09 49.4 5.0 55 221-276 1-55 (55)
151 PF09759 Atx10homo_assoc: Spin 97.3 0.00088 1.9E-08 53.6 7.3 69 132-206 2-71 (102)
152 PF08569 Mo25: Mo25-like; Int 97.2 0.059 1.3E-06 54.3 20.8 228 244-503 71-308 (335)
153 COG5096 Vesicle coat complex, 97.2 0.063 1.4E-06 59.1 22.3 168 216-407 28-196 (757)
154 KOG3473 RNA polymerase II tran 97.2 0.0011 2.4E-08 50.6 6.3 79 555-634 19-111 (112)
155 PRK14707 hypothetical protein; 97.2 0.27 5.9E-06 59.1 27.8 309 76-407 303-615 (2710)
156 KOG2032 Uncharacterized conser 97.1 0.084 1.8E-06 54.1 20.3 261 254-521 263-531 (533)
157 PF08569 Mo25: Mo25-like; Int 97.1 0.028 6.1E-07 56.6 16.9 260 221-523 13-285 (335)
158 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00045 9.8E-09 49.2 3.0 55 465-519 1-55 (55)
159 KOG3036 Protein involved in ce 97.1 0.062 1.3E-06 49.8 17.1 182 80-277 96-290 (293)
160 KOG1020 Sister chromatid cohes 97.0 1.1 2.4E-05 52.6 30.5 145 58-236 813-960 (1692)
161 KOG1078 Vesicle coat complex C 97.0 0.18 3.9E-06 54.7 22.4 270 131-479 260-531 (865)
162 PRK14707 hypothetical protein; 97.0 0.41 9E-06 57.7 26.6 303 79-405 222-529 (2710)
163 smart00185 ARM Armadillo/beta- 97.0 0.002 4.4E-08 42.5 5.2 39 239-277 2-40 (41)
164 PF12460 MMS19_C: RNAPII trans 97.0 0.69 1.5E-05 49.1 27.8 339 78-482 17-396 (415)
165 KOG4151 Myosin assembly protei 96.8 0.016 3.4E-07 62.9 12.8 204 145-362 492-699 (748)
166 KOG1058 Vesicle coat complex C 96.8 0.16 3.4E-06 54.8 19.7 233 79-362 222-463 (948)
167 PF07814 WAPL: Wings apart-lik 96.8 0.092 2E-06 54.2 18.2 288 50-362 14-355 (361)
168 PF11841 DUF3361: Domain of un 96.8 0.023 5.1E-07 49.5 11.4 133 97-241 4-136 (160)
169 KOG1248 Uncharacterized conser 96.8 0.48 1E-05 54.1 24.2 225 131-363 669-899 (1176)
170 smart00875 BACK BTB And C-term 96.8 0.0021 4.5E-08 52.8 4.8 48 655-702 1-48 (101)
171 smart00185 ARM Armadillo/beta- 96.7 0.0033 7.1E-08 41.5 4.6 39 94-144 2-40 (41)
172 KOG4151 Myosin assembly protei 96.7 0.013 2.7E-07 63.6 11.0 242 94-360 494-739 (748)
173 PF12717 Cnd1: non-SMC mitotic 96.7 0.077 1.7E-06 48.7 14.9 92 262-362 1-92 (178)
174 PF11822 DUF3342: Domain of un 96.6 0.0026 5.6E-08 61.8 5.0 89 562-650 14-104 (317)
175 smart00512 Skp1 Found in Skp1 96.6 0.012 2.6E-07 48.4 8.2 80 555-635 4-104 (104)
176 PF11841 DUF3361: Domain of un 96.6 0.062 1.4E-06 46.9 12.7 130 149-282 3-135 (160)
177 PF13764 E3_UbLigase_R4: E3 ub 96.6 0.27 5.9E-06 55.3 21.0 198 99-306 112-334 (802)
178 PF12755 Vac14_Fab1_bd: Vacuol 96.6 0.0047 1E-07 49.6 5.4 73 448-521 24-96 (97)
179 KOG0511 Ankyrin repeat protein 96.5 0.0092 2E-07 58.2 7.9 104 536-641 131-237 (516)
180 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.015 3.2E-07 46.7 7.8 89 308-403 3-93 (97)
181 PF04078 Rcd1: Cell differenti 96.5 0.29 6.2E-06 46.6 17.0 226 130-360 9-260 (262)
182 KOG4535 HEAT and armadillo rep 96.5 0.042 9.2E-07 55.7 12.2 297 77-407 269-604 (728)
183 PF04078 Rcd1: Cell differenti 96.5 0.046 1E-06 51.8 11.8 180 79-276 66-260 (262)
184 COG5656 SXM1 Importin, protein 96.4 1.9 4.2E-05 46.8 24.3 262 76-363 429-712 (970)
185 KOG1724 SCF ubiquitin ligase, 96.4 0.026 5.6E-07 49.7 9.2 98 560-658 13-138 (162)
186 KOG1991 Nuclear transport rece 96.4 0.53 1.1E-05 52.7 20.7 246 156-405 409-670 (1010)
187 PF06025 DUF913: Domain of Unk 96.3 0.51 1.1E-05 48.8 19.7 122 266-390 77-209 (379)
188 PF05918 API5: Apoptosis inhib 96.3 0.84 1.8E-05 49.0 21.5 281 76-410 35-349 (556)
189 PF12717 Cnd1: non-SMC mitotic 96.3 0.19 4.1E-06 46.1 15.0 109 130-260 2-112 (178)
190 KOG2062 26S proteasome regulat 96.2 0.26 5.7E-06 53.1 17.0 160 292-508 520-681 (929)
191 KOG1058 Vesicle coat complex C 96.2 0.78 1.7E-05 49.8 20.4 174 210-410 102-276 (948)
192 PF07814 WAPL: Wings apart-lik 96.2 0.26 5.7E-06 50.8 16.9 258 131-409 37-358 (361)
193 PF11698 V-ATPase_H_C: V-ATPas 96.2 0.011 2.3E-07 48.8 5.2 75 449-523 41-117 (119)
194 KOG1832 HIV-1 Vpr-binding prot 96.1 1.2 2.5E-05 49.3 21.3 339 132-491 369-784 (1516)
195 PF06025 DUF913: Domain of Unk 96.1 0.78 1.7E-05 47.5 19.9 168 135-303 3-208 (379)
196 KOG2062 26S proteasome regulat 96.1 0.37 8E-06 52.0 17.5 161 207-393 519-681 (929)
197 KOG1020 Sister chromatid cohes 96.1 2.2 4.7E-05 50.4 24.4 143 105-278 817-960 (1692)
198 PF05004 IFRD: Interferon-rela 96.0 0.35 7.6E-06 48.6 16.4 197 55-277 41-256 (309)
199 KOG1566 Conserved protein Mo25 95.9 1.6 3.5E-05 42.5 19.2 237 243-514 73-326 (342)
200 KOG3036 Protein involved in ce 95.9 1.5 3.2E-05 41.0 20.4 205 79-288 40-256 (293)
201 KOG1248 Uncharacterized conser 95.9 0.57 1.2E-05 53.5 18.6 222 180-406 669-898 (1176)
202 KOG2274 Predicted importin 9 [ 95.9 1.7 3.7E-05 48.3 21.5 259 131-407 506-781 (1005)
203 PF08045 CDC14: Cell division 95.9 0.13 2.8E-06 49.2 11.8 100 180-279 106-208 (257)
204 KOG1832 HIV-1 Vpr-binding prot 95.8 0.51 1.1E-05 51.9 16.9 160 243-417 595-784 (1516)
205 PF05004 IFRD: Interferon-rela 95.8 0.67 1.5E-05 46.6 17.2 180 180-363 58-258 (309)
206 KOG1665 AFH1-interacting prote 95.7 0.026 5.7E-07 50.9 6.1 91 553-644 9-105 (302)
207 KOG1243 Protein kinase [Genera 95.7 0.061 1.3E-06 57.6 9.8 189 246-480 327-515 (690)
208 KOG2274 Predicted importin 9 [ 95.7 4.7 0.0001 45.1 23.8 217 180-406 465-689 (1005)
209 PF12719 Cnd3: Nuclear condens 95.7 0.73 1.6E-05 46.4 17.3 156 250-416 27-195 (298)
210 PF11698 V-ATPase_H_C: V-ATPas 95.7 0.035 7.5E-07 45.9 6.2 72 157-235 43-114 (119)
211 KOG1967 DNA repair/transcripti 95.7 0.44 9.5E-06 52.8 16.0 188 210-403 818-1021(1030)
212 KOG2999 Regulator of Rac1, req 95.6 0.21 4.6E-06 51.8 12.6 173 55-247 81-254 (713)
213 KOG1967 DNA repair/transcripti 95.5 0.17 3.7E-06 55.9 12.5 150 207-359 867-1021(1030)
214 PF08045 CDC14: Cell division 95.5 0.3 6.5E-06 46.8 12.7 99 79-194 107-207 (257)
215 PF13764 E3_UbLigase_R4: E3 ub 95.5 2.8 6E-05 47.5 22.0 185 154-347 114-333 (802)
216 PF02985 HEAT: HEAT repeat; I 95.5 0.015 3.3E-07 35.4 2.6 29 452-480 1-29 (31)
217 KOG2714 SETA binding protein S 95.4 0.055 1.2E-06 54.2 7.8 86 554-640 12-102 (465)
218 PF03931 Skp1_POZ: Skp1 family 95.4 0.063 1.4E-06 39.1 6.3 56 555-613 3-59 (62)
219 PF02985 HEAT: HEAT repeat; I 95.4 0.024 5.1E-07 34.5 3.4 29 494-522 2-30 (31)
220 KOG1243 Protein kinase [Genera 95.4 0.33 7.1E-06 52.4 13.8 230 242-523 286-517 (690)
221 KOG2032 Uncharacterized conser 95.4 2.3 4.9E-05 44.1 19.0 156 102-277 252-414 (533)
222 KOG4653 Uncharacterized conser 95.3 0.34 7.4E-06 53.2 13.9 172 180-362 742-918 (982)
223 PF12719 Cnd3: Nuclear condens 95.3 0.39 8.5E-06 48.3 13.7 192 291-523 26-232 (298)
224 PF05918 API5: Apoptosis inhib 95.2 5.8 0.00013 42.8 24.7 119 180-316 37-158 (556)
225 KOG2025 Chromosome condensatio 95.1 0.59 1.3E-05 50.3 14.5 128 180-316 61-189 (892)
226 KOG0414 Chromosome condensatio 95.0 0.32 6.9E-06 55.4 12.9 163 105-303 920-1083(1251)
227 KOG4464 Signaling protein RIC- 94.8 1.8 4E-05 43.5 16.0 250 220-485 110-407 (532)
228 KOG2137 Protein kinase [Signal 94.7 1.7 3.7E-05 47.3 16.9 231 131-389 288-520 (700)
229 KOG1566 Conserved protein Mo25 94.7 1.8 3.9E-05 42.1 15.3 206 285-523 73-288 (342)
230 COG5218 YCG1 Chromosome conden 94.6 7.5 0.00016 41.3 21.1 102 206-313 90-192 (885)
231 KOG4653 Uncharacterized conser 94.5 0.9 2E-05 50.1 14.3 212 131-360 742-962 (982)
232 KOG2956 CLIP-associating prote 94.5 2.2 4.7E-05 44.0 16.0 148 208-364 330-479 (516)
233 KOG0414 Chromosome condensatio 94.5 0.54 1.2E-05 53.6 12.9 140 250-406 920-1064(1251)
234 PF11701 UNC45-central: Myosin 94.4 0.2 4.4E-06 44.6 8.0 146 208-359 4-156 (157)
235 PF11701 UNC45-central: Myosin 94.3 0.26 5.7E-06 43.9 8.6 147 250-404 4-157 (157)
236 COG5116 RPN2 26S proteasome re 94.2 0.35 7.5E-06 50.5 10.0 125 333-507 551-677 (926)
237 KOG1992 Nuclear export recepto 94.2 11 0.00025 41.8 24.7 375 132-525 208-672 (960)
238 PF14668 RICTOR_V: Rapamycin-i 94.2 0.13 2.7E-06 38.6 5.2 67 350-419 4-71 (73)
239 KOG2025 Chromosome condensatio 94.2 5.5 0.00012 43.3 18.9 229 264-521 61-294 (892)
240 KOG1820 Microtubule-associated 94.1 1 2.2E-05 50.9 14.4 179 178-365 266-446 (815)
241 KOG2956 CLIP-associating prote 93.9 1.7 3.8E-05 44.6 14.1 169 78-277 302-476 (516)
242 KOG2137 Protein kinase [Signal 93.9 0.78 1.7E-05 49.8 12.3 180 289-511 347-527 (700)
243 KOG1820 Microtubule-associated 93.8 1.4 3E-05 49.9 14.5 188 291-522 253-444 (815)
244 KOG2715 Uncharacterized conser 93.7 0.37 8E-06 41.6 7.7 102 549-650 17-122 (210)
245 PF04063 DUF383: Domain of unk 93.3 1.1 2.4E-05 41.3 10.8 122 131-256 10-154 (192)
246 KOG3665 ZYG-1-like serine/thre 93.0 7.6 0.00016 43.9 18.8 181 314-514 494-690 (699)
247 KOG2999 Regulator of Rac1, req 92.8 5.1 0.00011 42.2 15.5 158 107-281 86-245 (713)
248 PF08506 Cse1: Cse1; InterPro 92.6 7.5 0.00016 40.2 16.9 256 132-401 56-370 (370)
249 COG5218 YCG1 Chromosome conden 92.5 17 0.00037 38.8 20.2 104 103-236 90-196 (885)
250 PF04063 DUF383: Domain of unk 92.2 0.65 1.4E-05 42.7 7.7 127 344-502 6-157 (192)
251 COG5116 RPN2 26S proteasome re 92.2 1.7 3.7E-05 45.7 11.3 153 212-390 521-675 (926)
252 KOG1778 CREB binding protein/P 92.1 0.1 2.2E-06 51.6 2.6 139 554-693 28-169 (319)
253 COG5656 SXM1 Importin, protein 91.8 19 0.0004 39.8 18.7 123 155-280 406-530 (970)
254 COG5098 Chromosome condensatio 91.8 4.3 9.3E-05 43.9 13.9 140 208-362 893-1037(1128)
255 COG5201 SKP1 SCF ubiquitin lig 91.6 1.9 4E-05 35.5 8.6 94 555-651 4-123 (158)
256 PF12231 Rif1_N: Rap1-interact 91.4 17 0.00038 37.8 18.3 266 126-405 56-351 (372)
257 KOG0413 Uncharacterized conser 90.9 25 0.00054 40.0 18.9 128 306-481 946-1074(1529)
258 COG5209 RCD1 Uncharacterized p 90.7 4.2 9.1E-05 37.5 11.0 149 80-245 117-276 (315)
259 KOG2933 Uncharacterized conser 90.6 3.4 7.3E-05 40.3 10.8 142 292-480 89-234 (334)
260 PF14668 RICTOR_V: Rapamycin-i 90.0 1.9 4.2E-05 32.3 7.0 67 80-157 4-70 (73)
261 PF12530 DUF3730: Protein of u 90.0 19 0.00041 34.6 17.3 134 75-236 13-151 (234)
262 KOG4464 Signaling protein RIC- 89.8 25 0.00055 35.8 18.7 174 55-238 43-233 (532)
263 PF14500 MMS19_N: Dos2-interac 89.8 21 0.00046 34.9 16.7 208 131-362 14-237 (262)
264 PF14500 MMS19_N: Dos2-interac 89.7 12 0.00026 36.6 14.4 217 253-482 3-239 (262)
265 PF11864 DUF3384: Domain of un 89.7 21 0.00046 38.5 17.6 71 451-521 250-330 (464)
266 KOG1788 Uncharacterized conser 89.7 43 0.00094 38.6 19.4 254 137-406 663-982 (2799)
267 KOG3665 ZYG-1-like serine/thre 89.4 6.4 0.00014 44.5 13.7 191 139-356 494-691 (699)
268 PF11707 Npa1: Ribosome 60S bi 89.4 13 0.00028 38.0 15.0 161 293-483 58-240 (330)
269 PF01466 Skp1: Skp1 family, di 89.3 0.9 2E-05 34.9 5.0 50 617-666 10-62 (78)
270 PF12231 Rif1_N: Rap1-interact 89.1 31 0.00067 35.9 20.2 306 33-362 15-352 (372)
271 KOG1525 Sister chromatid cohes 89.1 61 0.0013 39.2 24.5 174 332-509 258-441 (1266)
272 PF08167 RIX1: rRNA processing 88.3 2.1 4.5E-05 38.6 7.5 116 333-480 25-143 (165)
273 PF06371 Drf_GBD: Diaphanous G 88.3 1.9 4.1E-05 39.9 7.6 89 147-235 97-186 (187)
274 PF12031 DUF3518: Domain of un 88.2 0.55 1.2E-05 43.9 3.7 92 391-508 138-232 (257)
275 COG5209 RCD1 Uncharacterized p 88.2 4.3 9.4E-05 37.4 9.2 100 180-280 115-220 (315)
276 KOG1949 Uncharacterized conser 88.2 8.3 0.00018 41.9 12.6 187 210-405 177-369 (1005)
277 PRK09169 hypothetical protein; 88.1 88 0.0019 39.9 25.6 60 133-200 223-283 (2316)
278 PF08506 Cse1: Cse1; InterPro 87.8 18 0.00039 37.5 14.8 147 153-315 206-370 (370)
279 PF10363 DUF2435: Protein of u 87.7 1.3 2.8E-05 35.2 5.0 71 452-523 4-74 (92)
280 KOG1949 Uncharacterized conser 87.5 25 0.00053 38.6 15.5 173 131-319 189-369 (1005)
281 PF12530 DUF3730: Protein of u 87.1 29 0.00064 33.3 16.0 162 180-362 16-189 (234)
282 PF10363 DUF2435: Protein of u 87.0 3 6.4E-05 33.1 6.7 68 293-362 5-72 (92)
283 smart00638 LPD_N Lipoprotein N 86.8 40 0.00087 37.6 18.3 133 208-360 394-543 (574)
284 KOG2611 Neurochondrin/leucine- 86.0 48 0.001 34.7 18.7 134 79-219 27-164 (698)
285 smart00638 LPD_N Lipoprotein N 86.0 35 0.00076 38.1 17.3 162 158-353 394-569 (574)
286 PF06371 Drf_GBD: Diaphanous G 86.0 6 0.00013 36.5 9.6 77 200-277 100-186 (187)
287 KOG2933 Uncharacterized conser 85.4 5.4 0.00012 38.9 8.8 141 209-362 90-234 (334)
288 PF01347 Vitellogenin_N: Lipop 84.7 12 0.00026 42.2 13.0 201 105-356 396-616 (618)
289 PF13251 DUF4042: Domain of un 83.9 28 0.0006 31.8 12.3 160 348-522 1-175 (182)
290 PF01347 Vitellogenin_N: Lipop 83.8 15 0.00032 41.6 13.2 197 250-514 396-615 (618)
291 PF12031 DUF3518: Domain of un 83.6 2.5 5.4E-05 39.7 5.5 82 79-171 140-230 (257)
292 PF11865 DUF3385: Domain of un 82.4 10 0.00023 33.8 9.0 148 58-235 7-156 (160)
293 PF11865 DUF3385: Domain of un 81.7 11 0.00024 33.7 8.8 142 378-520 11-156 (160)
294 PF11864 DUF3384: Domain of un 81.5 83 0.0018 34.0 27.5 274 58-361 25-329 (464)
295 PF14225 MOR2-PAG1_C: Cell mor 81.5 56 0.0012 32.0 16.7 175 333-520 64-253 (262)
296 KOG2011 Sister chromatid cohes 80.3 43 0.00092 39.1 14.6 140 254-404 292-433 (1048)
297 PF08324 PUL: PUL domain; Int 79.0 26 0.00057 34.5 11.6 170 223-397 79-265 (268)
298 PF12830 Nipped-B_C: Sister ch 78.6 41 0.00088 31.0 11.9 71 208-283 9-79 (187)
299 PF08324 PUL: PUL domain; Int 78.5 17 0.00037 35.8 10.1 147 132-283 79-236 (268)
300 PRK09169 hypothetical protein; 78.0 2.2E+02 0.0047 36.7 25.6 101 134-243 182-284 (2316)
301 PF11707 Npa1: Ribosome 60S bi 77.3 89 0.0019 31.9 20.8 160 209-371 58-243 (330)
302 PLN03076 ARF guanine nucleotid 77.1 2.2E+02 0.0048 36.3 20.3 132 131-276 1152-1297(1780)
303 PF13251 DUF4042: Domain of un 76.7 42 0.00092 30.6 11.0 136 79-236 2-174 (182)
304 KOG1822 Uncharacterized conser 76.5 1.7E+02 0.0036 36.7 18.2 263 130-406 798-1088(2067)
305 PF10521 DUF2454: Protein of u 75.9 24 0.00052 35.1 10.2 71 207-277 119-202 (282)
306 KOG0413 Uncharacterized conser 75.2 12 0.00025 42.4 8.1 128 128-278 943-1073(1529)
307 PF14726 RTTN_N: Rotatin, an a 75.0 27 0.00058 28.1 8.1 69 331-402 28-96 (98)
308 PF11822 DUF3342: Domain of un 74.3 2.3 4.9E-05 41.9 2.4 41 649-689 71-111 (317)
309 PF12830 Nipped-B_C: Sister ch 74.3 66 0.0014 29.6 12.0 139 106-278 10-167 (187)
310 KOG2611 Neurochondrin/leucine- 72.6 1.3E+02 0.0029 31.6 19.3 137 251-393 13-168 (698)
311 PLN03076 ARF guanine nucleotid 71.8 2.2E+02 0.0048 36.3 18.5 290 76-389 1150-1514(1780)
312 PF08167 RIX1: rRNA processing 71.6 41 0.00088 30.3 9.7 116 59-198 23-147 (165)
313 KOG0301 Phospholipase A2-activ 70.1 1.6E+02 0.0034 32.6 14.6 163 218-388 555-727 (745)
314 PF14225 MOR2-PAG1_C: Cell mor 69.5 1.2E+02 0.0025 29.8 17.4 164 223-405 78-256 (262)
315 PF12074 DUF3554: Domain of un 68.5 1.1E+02 0.0023 31.5 13.3 80 219-302 174-255 (339)
316 PF06685 DUF1186: Protein of u 67.5 62 0.0013 31.3 10.3 107 156-276 72-181 (249)
317 cd03568 VHS_STAM VHS domain fa 67.0 21 0.00046 31.2 6.6 71 208-278 38-110 (144)
318 KOG0891 DNA-dependent protein 66.0 1.7E+02 0.0038 38.1 16.2 219 180-408 496-721 (2341)
319 KOG2676 Uncharacterized conser 65.6 8.8 0.00019 38.1 4.2 64 184-247 375-440 (478)
320 cd03561 VHS VHS domain family; 64.4 29 0.00064 29.8 7.0 71 208-278 38-112 (133)
321 KOG2011 Sister chromatid cohes 64.0 2.2E+02 0.0049 33.6 15.3 137 343-520 297-434 (1048)
322 KOG0392 SNF2 family DNA-depend 63.8 1.1E+02 0.0024 36.5 12.7 239 105-362 78-325 (1549)
323 KOG3840 Uncharaterized conserv 63.4 12 0.00027 36.0 4.7 86 550-635 93-184 (438)
324 PF04869 Uso1_p115_head: Uso1 63.2 1.5E+02 0.0033 29.8 12.6 138 180-317 53-228 (312)
325 PF10521 DUF2454: Protein of u 62.9 62 0.0013 32.2 10.0 113 250-362 120-253 (282)
326 PF14726 RTTN_N: Rotatin, an a 62.6 17 0.00038 29.1 4.8 68 449-516 28-95 (98)
327 KOG1788 Uncharacterized conser 61.7 3.2E+02 0.007 32.1 26.4 235 76-342 480-783 (2799)
328 PF08216 CTNNBL: Catenin-beta- 61.4 9.9 0.00021 30.9 3.2 41 470-510 65-105 (108)
329 cd03561 VHS VHS domain family; 61.0 45 0.00097 28.7 7.5 71 250-320 38-112 (133)
330 cd03569 VHS_Hrs_Vps27p VHS dom 61.0 29 0.00063 30.2 6.4 72 207-278 41-114 (142)
331 PF13001 Ecm29: Proteasome sta 59.9 1.8E+02 0.0039 31.8 13.6 169 180-363 252-444 (501)
332 cd08050 TAF6 TATA Binding Prot 59.3 73 0.0016 32.7 9.9 138 211-360 182-338 (343)
333 cd03567 VHS_GGA VHS domain fam 58.4 41 0.00088 29.2 6.7 70 208-277 39-115 (139)
334 cd08050 TAF6 TATA Binding Prot 58.3 1.2E+02 0.0026 31.2 11.2 139 253-405 182-339 (343)
335 KOG0301 Phospholipase A2-activ 57.9 3E+02 0.0065 30.5 15.0 159 180-344 559-727 (745)
336 PF12054 DUF3535: Domain of un 57.9 2.3E+02 0.0049 30.4 13.6 110 221-334 101-211 (441)
337 KOG1992 Nuclear export recepto 57.2 3.4E+02 0.0075 31.0 19.1 174 208-387 499-705 (960)
338 cd03568 VHS_STAM VHS domain fa 56.0 40 0.00087 29.5 6.4 71 105-194 38-110 (144)
339 PF10274 ParcG: Parkin co-regu 55.7 1.6E+02 0.0036 26.8 10.3 79 207-287 38-118 (183)
340 PF13001 Ecm29: Proteasome sta 55.1 1.8E+02 0.004 31.7 12.7 176 131-320 252-443 (501)
341 PF10274 ParcG: Parkin co-regu 55.1 1.6E+02 0.0035 26.8 10.1 80 249-328 38-117 (183)
342 KOG0891 DNA-dependent protein 55.0 2.5E+02 0.0054 36.8 14.9 202 204-408 562-765 (2341)
343 cd03569 VHS_Hrs_Vps27p VHS dom 54.3 46 0.001 29.0 6.5 71 105-194 42-114 (142)
344 PF00651 BTB: BTB/POZ domain; 53.9 23 0.0005 29.0 4.5 31 651-681 80-110 (111)
345 PF12463 DUF3689: Protein of u 53.8 1.9E+02 0.0041 28.9 11.3 121 242-362 2-173 (303)
346 PF01603 B56: Protein phosphat 53.5 1.2E+02 0.0026 32.1 10.6 229 103-362 132-370 (409)
347 smart00288 VHS Domain present 53.3 55 0.0012 28.2 6.7 72 105-194 38-111 (133)
348 PF12074 DUF3554: Domain of un 52.8 1.8E+02 0.004 29.7 11.8 79 261-343 174-254 (339)
349 PF01365 RYDR_ITPR: RIH domain 52.5 42 0.0009 31.6 6.5 126 148-278 34-169 (207)
350 PF01603 B56: Protein phosphat 52.3 3.1E+02 0.0068 29.0 16.2 216 180-403 105-323 (409)
351 KOG0392 SNF2 family DNA-depend 52.2 1.8E+02 0.004 34.7 12.1 94 264-362 144-237 (1549)
352 PF07707 BACK: BTB And C-termi 52.0 16 0.00034 29.6 3.1 59 624-682 2-74 (103)
353 KOG2549 Transcription initiati 52.0 2.7E+02 0.0058 30.2 12.3 140 210-361 210-369 (576)
354 KOG2038 CAATT-binding transcri 51.3 4.1E+02 0.0089 30.1 16.2 102 207-318 304-407 (988)
355 PF01365 RYDR_ITPR: RIH domain 50.5 47 0.001 31.2 6.5 94 221-319 75-168 (207)
356 KOG2676 Uncharacterized conser 49.7 21 0.00045 35.6 3.9 64 135-204 375-439 (478)
357 PF14631 FancD2: Fanconi anaem 49.5 6.4E+02 0.014 31.8 21.5 68 333-406 431-502 (1426)
358 KOG1848 Uncharacterized conser 49.4 2.4E+02 0.0051 34.3 12.4 27 452-478 1104-1130(1610)
359 cd03567 VHS_GGA VHS domain fam 48.4 69 0.0015 27.8 6.5 95 302-406 16-116 (139)
360 PF06012 DUF908: Domain of Unk 48.3 3E+02 0.0065 28.1 12.3 66 131-201 237-304 (329)
361 KOG2723 Uncharacterized conser 47.2 46 0.00099 31.3 5.5 93 552-645 7-105 (221)
362 KOG1410 Nuclear transport rece 46.3 4.6E+02 0.01 29.2 15.7 250 75-362 18-284 (1082)
363 KOG2075 Topoisomerase TOP1-int 46.2 38 0.00083 35.4 5.3 44 650-696 185-228 (521)
364 KOG1822 Uncharacterized conser 46.1 7.5E+02 0.016 31.6 19.7 110 250-362 877-988 (2067)
365 smart00288 VHS Domain present 45.9 75 0.0016 27.3 6.4 71 250-320 38-111 (133)
366 PF14666 RICTOR_M: Rapamycin-i 45.1 1.3E+02 0.0028 28.7 8.4 130 346-479 77-224 (226)
367 KOG1525 Sister chromatid cohes 44.6 36 0.00078 41.0 5.5 147 207-362 259-405 (1266)
368 KOG2005 26S proteasome regulat 44.0 5E+02 0.011 29.0 16.7 107 379-527 642-749 (878)
369 COG5537 IRR1 Cohesin [Cell div 42.7 2.3E+02 0.0051 30.9 10.3 141 253-405 279-421 (740)
370 KOG1848 Uncharacterized conser 42.6 5.2E+02 0.011 31.7 13.7 218 180-404 857-1130(1610)
371 PF03130 HEAT_PBS: PBS lyase H 41.5 20 0.00044 20.7 1.6 26 132-167 1-26 (27)
372 PF08389 Xpo1: Exportin 1-like 41.3 2.3E+02 0.005 24.4 11.9 142 347-516 2-148 (148)
373 PF08389 Xpo1: Exportin 1-like 40.8 1E+02 0.0022 26.7 6.9 50 131-194 3-54 (148)
374 PF12463 DUF3689: Protein of u 39.1 4.1E+02 0.009 26.6 16.8 137 98-241 3-178 (303)
375 PF04064 DUF384: Domain of unk 38.8 38 0.00082 24.2 2.8 49 475-523 2-51 (58)
376 PF08216 CTNNBL: Catenin-beta- 38.3 45 0.00097 27.3 3.5 38 134-171 64-101 (108)
377 PHA03098 kelch-like protein; P 38.0 74 0.0016 35.1 6.6 32 650-681 73-104 (534)
378 KOG2549 Transcription initiati 37.9 2.1E+02 0.0045 30.9 9.1 112 57-171 239-353 (576)
379 COG5537 IRR1 Cohesin [Cell div 35.2 4.4E+02 0.0095 29.0 10.9 145 336-521 278-422 (740)
380 PF06685 DUF1186: Protein of u 35.1 4.3E+02 0.0093 25.6 12.2 81 247-331 71-153 (249)
381 COG5098 Chromosome condensatio 34.9 7E+02 0.015 28.1 24.1 116 379-522 301-416 (1128)
382 KOG2149 Uncharacterized conser 34.6 3.4E+02 0.0073 28.2 9.7 114 208-322 59-172 (393)
383 PLN03205 ATR interacting prote 34.3 5.4E+02 0.012 26.6 11.2 178 292-483 324-519 (652)
384 PF00790 VHS: VHS domain; Int 33.6 62 0.0013 28.1 4.1 74 105-194 43-118 (140)
385 PF00790 VHS: VHS domain; Int 33.0 3.2E+02 0.007 23.6 9.0 71 292-362 43-118 (140)
386 PF03378 CAS_CSE1: CAS/CSE pro 32.2 6.5E+02 0.014 26.9 13.1 150 204-362 114-272 (435)
387 KOG4350 Uncharacterized conser 31.8 33 0.00071 34.8 2.2 71 575-649 93-176 (620)
388 PF09324 DUF1981: Domain of un 31.2 1.2E+02 0.0027 23.6 5.0 66 330-402 14-84 (86)
389 PF11791 Aconitase_B_N: Aconit 31.0 2.7E+02 0.0059 24.4 7.2 25 494-518 96-120 (154)
390 PF08767 CRM1_C: CRM1 C termin 31.0 5.8E+02 0.013 25.9 16.0 180 222-404 42-242 (319)
391 PF07571 DUF1546: Protein of u 30.8 86 0.0019 24.9 4.1 57 129-192 19-76 (92)
392 PF12726 SEN1_N: SEN1 N termin 30.5 5E+02 0.011 30.0 11.9 110 293-406 443-553 (727)
393 PF09758 FPL: Uncharacterised 30.2 3E+02 0.0065 24.2 7.5 129 322-478 15-147 (149)
394 cd03572 ENTH_epsin_related ENT 29.8 2.3E+02 0.0051 23.9 6.6 40 105-156 39-80 (122)
395 KOG4390 Voltage-gated A-type K 28.6 3.1E+02 0.0067 27.9 8.1 102 554-659 41-148 (632)
396 cd00197 VHS_ENTH_ANTH VHS, ENT 28.5 2.3E+02 0.005 23.4 6.6 74 105-192 38-113 (115)
397 smart00567 EZ_HEAT E-Z type HE 28.5 63 0.0014 19.0 2.3 28 222-260 2-29 (30)
398 PF07923 N1221: N1221-like pro 28.3 63 0.0014 32.3 3.6 55 448-502 57-126 (293)
399 KOG4524 Uncharacterized conser 27.6 2.2E+02 0.0047 33.1 7.7 94 207-302 803-900 (1014)
400 KOG4231 Intracellular membrane 27.5 58 0.0012 34.3 3.1 68 209-277 330-398 (763)
401 PF04821 TIMELESS: Timeless pr 27.3 6.1E+02 0.013 24.9 11.7 78 390-483 133-211 (266)
402 KOG2152 Sister chromatid cohes 27.0 9.7E+02 0.021 27.2 22.7 64 51-118 326-389 (865)
403 PF04388 Hamartin: Hamartin pr 26.7 5.8E+02 0.013 29.1 11.1 59 304-362 81-140 (668)
404 PF12726 SEN1_N: SEN1 N termin 26.7 1E+03 0.023 27.5 18.8 109 252-362 444-553 (727)
405 KOG3713 Voltage-gated K+ chann 26.6 3.9E+02 0.0085 28.5 8.9 97 553-650 31-141 (477)
406 PF09758 FPL: Uncharacterised 26.6 1.6E+02 0.0035 25.8 5.2 124 94-235 16-148 (149)
407 PF12783 Sec7_N: Guanine nucle 26.4 1.4E+02 0.003 26.8 5.3 82 328-414 68-154 (168)
408 cd03572 ENTH_epsin_related ENT 26.4 4E+02 0.0086 22.5 7.6 71 334-406 39-119 (122)
409 KOG4231 Intracellular membrane 26.3 50 0.0011 34.7 2.5 71 292-362 329-399 (763)
410 PHA02713 hypothetical protein; 26.3 85 0.0018 34.9 4.6 33 649-681 90-122 (557)
411 PF06012 DUF908: Domain of Unk 25.6 2.8E+02 0.0061 28.3 7.8 64 79-151 238-304 (329)
412 PF04869 Uso1_p115_head: Uso1 25.3 7.2E+02 0.016 25.1 14.2 142 262-405 51-230 (312)
413 KOG1993 Nuclear transport rece 24.8 1.1E+03 0.024 27.1 22.5 292 77-405 501-811 (978)
414 PF03378 CAS_CSE1: CAS/CSE pro 24.4 8.1E+02 0.018 26.2 11.1 35 247-281 115-149 (435)
415 KOG1791 Uncharacterized conser 24.1 1.5E+03 0.033 28.4 14.4 224 128-360 1410-1658(1758)
416 PF11791 Aconitase_B_N: Aconit 23.6 1.8E+02 0.0038 25.5 4.8 29 378-406 95-123 (154)
417 PF08713 DNA_alkylation: DNA a 23.5 6E+02 0.013 23.6 11.6 132 380-523 54-186 (213)
418 PF09324 DUF1981: Domain of un 23.2 2.4E+02 0.0052 22.0 5.3 65 156-232 16-84 (86)
419 PF11894 DUF3414: Protein of u 22.9 1.8E+03 0.038 28.8 23.3 66 126-198 574-643 (1691)
420 PF15573 Imm27: Immunity prote 22.9 4.8E+02 0.01 24.5 7.6 68 75-172 59-126 (259)
421 cd00197 VHS_ENTH_ANTH VHS, ENT 22.9 3.1E+02 0.0067 22.6 6.4 70 334-404 38-113 (115)
422 KOG1993 Nuclear transport rece 22.8 1.2E+03 0.026 26.9 21.3 223 130-362 629-864 (978)
423 PF12765 Cohesin_HEAT: HEAT re 22.7 85 0.0018 20.6 2.2 26 450-475 17-42 (42)
424 PF14663 RasGEF_N_2: Rapamycin 22.5 1.1E+02 0.0023 25.6 3.4 39 378-416 9-47 (115)
425 cd03565 VHS_Tom1 VHS domain fa 22.1 4.1E+02 0.009 23.1 7.1 59 131-194 54-115 (141)
426 cd03565 VHS_Tom1 VHS domain fa 22.1 4.4E+02 0.0096 22.9 7.3 70 208-277 39-114 (141)
427 PF12054 DUF3535: Domain of un 21.5 1E+03 0.022 25.5 16.4 54 305-362 101-155 (441)
428 PF04388 Hamartin: Hamartin pr 21.4 6.8E+02 0.015 28.5 10.4 56 180-235 83-139 (668)
429 KOG2149 Uncharacterized conser 20.9 6.2E+02 0.013 26.3 8.8 111 251-362 60-170 (393)
430 PF14663 RasGEF_N_2: Rapamycin 20.7 2E+02 0.0044 23.9 4.7 31 250-280 9-39 (115)
431 PHA02790 Kelch-like protein; P 20.4 1.6E+02 0.0036 31.9 5.3 44 604-650 109-152 (480)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=349.49 Aligned_cols=450 Identities=21% Similarity=0.218 Sum_probs=366.1
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHH
Q 004992 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (720)
Q Consensus 56 ~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~ 134 (720)
.+.+|.+++.|.+. ++..+..|+++|.+++.+ ++.+..+++.|+||.|+++|++.+. +.+|+
T Consensus 188 aGaVp~LV~LLsS~------d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-----------~~VRE 250 (2102)
T PLN03200 188 AGGVDILVKLLSSG------NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-----------VSVRA 250 (2102)
T ss_pred cCCHHHHHHHHcCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-----------hHHHH
Confidence 45788888888654 566899999999888875 7889999999999999999976433 18999
Q ss_pred HHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCcc-chhhhHHHHHHHHHHHHhhhcCch-----------h--
Q 004992 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNC-SRAVNSVIRRAADAITNLAHENSS-----------I-- 199 (720)
Q Consensus 135 ~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~-~~~~~~v~~~a~~~L~~l~~~~~~-----------~-- 199 (720)
.|+|+|.+|+ ++++++..+++.|+++.|+.++..+..... ......+++.|+|+|.|+|.+... .
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd 330 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRS 330 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccch
Confidence 9999999999 789999999999999999999985442110 000115688888888888863111 0
Q ss_pred ------------------------------------------------------------------hHHHHhcCCcHHHH
Q 004992 200 ------------------------------------------------------------------KTRVRMEGGIPPLV 213 (720)
Q Consensus 200 ------------------------------------------------------------------~~~~~~~~~i~~L~ 213 (720)
+..+.+.++++.|+
T Consensus 331 ~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV 410 (2102)
T PLN03200 331 PAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLV 410 (2102)
T ss_pred HHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhh
Confidence 00112234455556
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCCh
Q 004992 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (720)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l 293 (720)
.++...+.+++..++++|++++.++.+.++.+.+.|++|.|+.+|.+++..+++.++++|+|++..++..+..+++.|++
T Consensus 411 ~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI 490 (2102)
T PLN03200 411 GLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGI 490 (2102)
T ss_pred hhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 66666677899999999999998888999999999999999999999999999999999999998888888999999999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcc-----
Q 004992 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMH----- 368 (720)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----- 368 (720)
|.|+++|.+++..++++|+|+|.|++..+++.+..+.+.|+++.|+++|+++++.+++.|+++|.+++..+ +.+
T Consensus 491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~-d~~~I~~L 569 (2102)
T PLN03200 491 PPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA-DAATISQL 569 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc-chhHHHHH
Confidence 99999999999999999999999999755455555667899999999999999999999999999997511 100
Q ss_pred ---------------------------h----hhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc-CCCchhHHHh
Q 004992 369 ---------------------------N----QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIR 416 (720)
Q Consensus 369 ---------------------------~----~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~ 416 (720)
. .......|+++.|++++.+++..+++.|+++|.+++. +++....++.
T Consensus 570 v~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ 649 (2102)
T PLN03200 570 TALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT 649 (2102)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 0 0011246899999999999999999999999999976 4556778999
Q ss_pred hcccccccchhh----hhhhhHHHHHHHHH------HHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccch
Q 004992 417 VGGVQKLQDGEF----IVQATKDCVAKTLK------RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRT 486 (720)
Q Consensus 417 ~~~v~~L~~~~~----~~~~~~~~~~~~~~------~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 486 (720)
.|++++|..... .......+...++. +....+..+.+++|++++++++.+++..|+.+|.+++.+.+...
T Consensus 650 agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ 729 (2102)
T PLN03200 650 DEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAA 729 (2102)
T ss_pred cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHH
Confidence 999999877333 33333333333332 22334678999999999999999999999999999999999888
Q ss_pred hhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 487 IFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 487 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.+...|+++.|+.++++++++.|+.|+++|.+|+++.
T Consensus 730 ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 730 EALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 8889999999999999999999999999999999754
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=334.19 Aligned_cols=459 Identities=21% Similarity=0.228 Sum_probs=364.7
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHH
Q 004992 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (720)
Q Consensus 55 ~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~ 133 (720)
-.+.+|.++++|.+. .+..+|..|+++|.+++.+ ++++..+++.|+++.|+.++..++... ........++
T Consensus 229 eaGaVP~LV~LL~sg-----~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~---~~~~~~~~Lq 300 (2102)
T PLN03200 229 DAGAVKQLLKLLGQG-----NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEF---MQGEFAQALQ 300 (2102)
T ss_pred HCCCHHHHHHHHccC-----CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhh---hccccchHHH
Confidence 345688888888764 3556899999999999995 899999999999999999998655310 0001223679
Q ss_pred HHHHHHHHHhccC-hh-----------hHHHH-------------------------HH-cCChHHHHHHHhccCCCccc
Q 004992 134 KGSAFALGLLAVK-PE-----------HQQLI-------------------------VD-NGALSHLVNLLKRHMDSNCS 175 (720)
Q Consensus 134 ~~a~~~L~~L~~~-~~-----------~~~~~-------------------------~~-~~~l~~L~~lL~~~~~~~~~ 175 (720)
++|+|+|+|||.+ +. .+... ++ ..+.+.|+++++..++....
T Consensus 301 e~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vq 380 (2102)
T PLN03200 301 ENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQ 380 (2102)
T ss_pred HHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhH
Confidence 9999999999942 22 11100 11 12336677777655433200
Q ss_pred ----------------------------------hhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCH
Q 004992 176 ----------------------------------RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (720)
Q Consensus 176 ----------------------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 221 (720)
....+++..++++|.+++.++.+.+..+...|+++.|+++|.+++.
T Consensus 381 e~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~ 460 (2102)
T PLN03200 381 ERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSE 460 (2102)
T ss_pred HHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCH
Confidence 0124899999999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc
Q 004992 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (720)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~ 301 (720)
.++..++++|++++.++++++..+++.|++|.|+++|.+++..+++.|+|+|+|++.+++..+..+.+.|+++.|+++|.
T Consensus 461 ~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~ 540 (2102)
T PLN03200 461 QQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLK 540 (2102)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHh
Confidence 99999999999999888899999999999999999999999999999999999999876666666668899999999999
Q ss_pred cCChHHHHHHHHHHHHHhccCcch-------------------------------------hhHHHhcCChHHHHHHhcC
Q 004992 302 SCCSESQREAALLLGQFAATDSDC-------------------------------------KVHIVQRGAVRPLIEMLQS 344 (720)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~-------------------------------------~~~~~~~~~~~~L~~ll~~ 344 (720)
+++++.+..++++|.|++...+.. .......|+++.|++++++
T Consensus 541 sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s 620 (2102)
T PLN03200 541 NGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS 620 (2102)
T ss_pred CCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC
Confidence 999999999999999996322110 0001135899999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc--CCCchhHHHhhccccc
Q 004992 345 PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQK 422 (720)
Q Consensus 345 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~v~~ 422 (720)
++..+++.|+++|.+++. +..+.+..+...|++++++.++.+.+..+++.++++|.+++. +..++..+++.|+++.
T Consensus 621 gs~~ikk~Aa~iLsnL~a--~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~p 698 (2102)
T PLN03200 621 SKEETQEKAASVLADIFS--SRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKP 698 (2102)
T ss_pred CCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHH
Confidence 999999999999999998 456667789999999999999999999999999999999985 3445567899999999
Q ss_pred ccchhhhhh-hhHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccc----hhhhc
Q 004992 423 LQDGEFIVQ-ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFID 490 (720)
Q Consensus 423 L~~~~~~~~-~~~~~~~~~~~~l-------~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~ 490 (720)
|.+...... ...+-+..++.++ ......++++.|+++++++++..|+.|+++|.+|+...... ..+..
T Consensus 699 L~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~ 778 (2102)
T PLN03200 699 LIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQC 778 (2102)
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 887543321 2222222333322 33456788999999999999999999999999999877622 44577
Q ss_pred cCcHHHHHHhhcCCCchhhhh--HHHHHHHHHhhc
Q 004992 491 GGGLELLLGLLGSTNPKQQLD--GAVALFKLANKA 523 (720)
Q Consensus 491 ~~~~~~L~~ll~~~~~~v~~~--a~~aL~~L~~~~ 523 (720)
.|.+..|+.+|+..|.+.... |..+|..|++..
T Consensus 779 ~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~ 813 (2102)
T PLN03200 779 RGTVLALVDLLNSTDLDSSATSEALEALALLARTK 813 (2102)
T ss_pred hCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhc
Confidence 899999999999988886655 999999999853
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-36 Score=303.35 Aligned_cols=325 Identities=24% Similarity=0.343 Sum_probs=294.9
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~ 135 (720)
+.+|++|+.|... .++.++.+|+|+|.|++++ ++..+.+++.|++|.++.++.+++. .|+++
T Consensus 109 G~v~~lV~~l~~~-----~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~------------~v~eQ 171 (514)
T KOG0166|consen 109 GVVPRLVEFLSRD-----DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA------------DVREQ 171 (514)
T ss_pred CcHHHHHHHHccC-----CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH------------HHHHH
Confidence 6788888888754 3566899999999999995 7888999999999999999999988 99999
Q ss_pred HHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHH
Q 004992 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (720)
Q Consensus 136 a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (720)
|.|+|+|++ +++.+|+.++..|++++|+.++..+... .+++.+.|+|.|+|.+..+....-....++|.|..
T Consensus 172 avWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~-------~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ 244 (514)
T KOG0166|consen 172 AVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKL-------SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR 244 (514)
T ss_pred HHHHHhccccCChHHHHHHHhhcchHHHHHHhccccch-------HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999887663 78899999999999866433333444578999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChH
Q 004992 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (720)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~ 294 (720)
++.+.|+++...|||++.+|+.+.++..+.+++.|++|.|+.+|.+.+..++..|+++++|++.+++...+.+++.|+++
T Consensus 245 ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~ 324 (514)
T KOG0166|consen 245 LLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALP 324 (514)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc-cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhh
Q 004992 295 PVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGI 373 (720)
Q Consensus 295 ~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l 373 (720)
.|..++. +....++++|+|+|+|++.++.+....+++.|++|.|+.+|+..+.++|+.|+|+++|++..+ .++.-..+
T Consensus 325 ~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g-~~~qi~yL 403 (514)
T KOG0166|consen 325 VLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG-TPEQIKYL 403 (514)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC-CHHHHHHH
Confidence 9999999 445669999999999999999999999999999999999999999999999999999999933 34445678
Q ss_pred hhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 374 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 374 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
++.|.++++..+|.-.+..+...++.+|.+|-.
T Consensus 404 v~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 404 VEQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred HHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 999999999999988999999999999999854
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-34 Score=290.67 Aligned_cols=441 Identities=18% Similarity=0.261 Sum_probs=357.3
Q ss_pred cchhhhccchhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC---hhh
Q 004992 20 KLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN---EEV 96 (720)
Q Consensus 20 ~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~---~~~ 96 (720)
..-+.-++..++..+.+|-..............+......+.+++.+.+. ++..+..+...+..+.+. |..
T Consensus 29 ~~veiRk~kree~l~k~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~------~~~~q~~a~~~~rkllS~~~~ppi 102 (514)
T KOG0166|consen 29 QVVEIRKNKREESLLKRRNDEEELMLDELLSDSQSQASNLELMLAALYSD------DPQQQLTATQAFRKLLSKERNPPI 102 (514)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHhhhhHHHHHHHhCC------CHHHHHHHHHHHHHHHccCCCCCH
Confidence 33333444466667777662222222222233444445567777777776 555688899988888663 344
Q ss_pred HHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccc
Q 004992 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS 175 (720)
Q Consensus 97 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~ 175 (720)
..++..|+||.++..|...+. +.++..|+|+|.|++ .+.+.-..+++.|++|.++.++.+++.
T Consensus 103 -~~vi~~G~v~~lV~~l~~~~~-----------~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~---- 166 (514)
T KOG0166|consen 103 -DEVIQSGVVPRLVEFLSRDDN-----------PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA---- 166 (514)
T ss_pred -HHHHHcCcHHHHHHHHccCCC-----------hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH----
Confidence 455556999999999985543 289999999999999 788888899999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCH-HHHHHHHHHHHHhccCChhcHHHHHhCCCHHHH
Q 004992 176 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254 (720)
Q Consensus 176 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L 254 (720)
.+++.|+|+|.|++.+.+..|..+...|+++.|+.++...+. ...+.+.|+|.|||.+....-..-.-..++|.|
T Consensus 167 ----~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L 242 (514)
T KOG0166|consen 167 ----DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPAL 242 (514)
T ss_pred ----HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987764 788899999999998653222211223479999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCC
Q 004992 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (720)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 334 (720)
..++.+.|++|...|+|+|++|+.+..+..+.+++.|+++.|+.+|.+.+..++..|+++++|++.+++.....++..|+
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~ 322 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA 322 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh
Confidence 99999999999999999999999888888899999999999999999999999999999999999999899999999999
Q ss_pred hHHHHHHhc-CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC--CCch
Q 004992 335 VRPLIEMLQ-SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNV 411 (720)
Q Consensus 335 ~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 411 (720)
+|.|..++. ++...+++.|+|+++|++. |..+....+.+.|.+|.|+.+++..+..+|+.|+|+|.|++.. ++..
T Consensus 323 L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi 400 (514)
T KOG0166|consen 323 LPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI 400 (514)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence 999999998 4666799999999999999 5666778899999999999999999999999999999999764 3333
Q ss_pred hHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCC---------c
Q 004992 412 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP---------D 482 (720)
Q Consensus 412 ~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~---------~ 482 (720)
..+++. ++++++..++...+..+...++.+|.++-.. .
T Consensus 401 ~yLv~~---------------------------------giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n 447 (514)
T KOG0166|consen 401 KYLVEQ---------------------------------GIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTN 447 (514)
T ss_pred HHHHHc---------------------------------CCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 344444 4666778888777877777777788877432 2
Q ss_pred ccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHh
Q 004992 483 DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 483 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~ 521 (720)
.....+.+.||+.++-.|-.+.+.++-..|...+..--.
T Consensus 448 ~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 448 PLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS 486 (514)
T ss_pred HHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 234567888999999999999999988888877765443
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.1e-35 Score=269.52 Aligned_cols=329 Identities=21% Similarity=0.291 Sum_probs=290.9
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHH
Q 004992 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (720)
Q Consensus 55 ~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~ 133 (720)
-.+.+|++++++.+. +....+.+|+|+|.|++++ ....+.++++|++|.++++|.+++. +|+
T Consensus 112 daGvVpRfvefm~~~-----q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~------------~V~ 174 (526)
T COG5064 112 DAGVVPRFVEFMDEI-----QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED------------DVR 174 (526)
T ss_pred hccccHHHHHHHHhc-----chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH------------HHH
Confidence 456889999999754 3334789999999999996 6777788899999999999999888 999
Q ss_pred HHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHH
Q 004992 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (720)
Q Consensus 134 ~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (720)
+++.|+|+|++ +++.+|+.+...|++.+++.++.++.... .+.+.+.|.|.|+|.+..+....-.....+|.|
T Consensus 175 eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~i------smlRn~TWtLSNlcRGknP~P~w~~isqalpiL 248 (526)
T COG5064 175 EQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHI------SMLRNATWTLSNLCRGKNPPPDWSNISQALPIL 248 (526)
T ss_pred HHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchH------HHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHH
Confidence 99999999999 89999999999999999999998665432 889999999999997543333333334678999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCC
Q 004992 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (720)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~ 292 (720)
.+++.+.++++...|||++..|+.+..+..+.+++.|..+.|+.+|.+++..++..+++.++|+..+++...+.++..|+
T Consensus 249 ~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~ 328 (526)
T COG5064 249 AKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGA 328 (526)
T ss_pred HHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheeccc
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcC-cchhh
Q 004992 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITD-MHNQA 371 (720)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~ 371 (720)
++.+..+|.+....+|+++||+++|++.++.+....+++.+++|+|+++|...+..+++.|||++.|...++.. ++.-.
T Consensus 329 L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ir 408 (526)
T COG5064 329 LKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR 408 (526)
T ss_pred HHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999983321 22345
Q ss_pred hhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 372 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 372 ~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
.+++.|++.+|.++|.-.+..+-+.++.++.|+..
T Consensus 409 yLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 409 YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 68899999999999988777777778888888854
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.9e-34 Score=265.83 Aligned_cols=447 Identities=20% Similarity=0.277 Sum_probs=358.5
Q ss_pred ccchhhhhhhhhhhccccCCCCCc--hHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc--ChhhHHHHH
Q 004992 26 VIGDEQQQMQQREISSSSAGTSSS--DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIV 101 (720)
Q Consensus 26 ~~~~~~~~m~~~~~~~~~~~~~~~--~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~--~~~~~~~~~ 101 (720)
+|..++-...+|-+++......+. .-.+...+.+|.+...|.++ |-+.+..|..-+..+.+ +..-.+.++
T Consensus 38 kqKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~elp~lt~~l~Sd------Die~q~qav~kFR~~LS~E~~PPIq~VI 111 (526)
T COG5064 38 KQKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFSD------DIEQQLQAVYKFRKLLSKETSPPIQPVI 111 (526)
T ss_pred HHHHHHHHHhhcccccccchhhhccCchhHHhhhhhHHHHHHHhhh------HHHHHHHHHHHHHHHhccccCCCchhHH
Confidence 444566666666664422211111 22355667888888877776 66678889988888766 233446788
Q ss_pred hCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhH
Q 004992 102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (720)
Q Consensus 102 ~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~ 180 (720)
+.|++|.++.++.....+ .++..|+|+|.|++ +...-...+++.|++|.++++|.+.+. +
T Consensus 112 daGvVpRfvefm~~~q~~-----------mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~--------~ 172 (526)
T COG5064 112 DAGVVPRFVEFMDEIQRD-----------MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED--------D 172 (526)
T ss_pred hccccHHHHHHHHhcchh-----------HHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH--------H
Confidence 999999999999644331 67889999999999 555555667899999999999999888 9
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCC--HHHHHHHHHHHHHhccCC--hhcHHHHHhCCCHHHHHH
Q 004992 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLAFKN--DENKNQIVECNALPTLIL 256 (720)
Q Consensus 181 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~--~~~~~~i~~~g~l~~L~~ 256 (720)
|++.++|+|.|++.+++..|..+.+.|.+..++.++.+.. ..+.+.+.|+|.||+++. +..-..+.. .+|.|.+
T Consensus 173 V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~K 250 (526)
T COG5064 173 VREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAK 250 (526)
T ss_pred HHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHH
Confidence 9999999999999999999999999999999999997765 478899999999999853 233444443 6999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChH
Q 004992 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (720)
Q Consensus 257 ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 336 (720)
++.+.++++...|+|+++.|+....+..+.+++.|..+.|+++|.+.+..++..+++.++|+..+++..-..++..|+++
T Consensus 251 Liys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~ 330 (526)
T COG5064 251 LIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALK 330 (526)
T ss_pred HHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHH
Confidence 99999999999999999999988778889999999999999999999999999999999999998888888899999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHh
Q 004992 337 PLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 416 (720)
Q Consensus 337 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 416 (720)
.+..+|.++...+|+.|||++.|++. |..+.-+.+.+.+.+|+|+.++.+.+..+++.|||++.|.+..--++..++.
T Consensus 331 a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ir 408 (526)
T COG5064 331 AFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR 408 (526)
T ss_pred HHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHH
Confidence 99999999989999999999999998 5666677889999999999999999999999999999999765444333222
Q ss_pred hcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc------------c
Q 004992 417 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------Q 484 (720)
Q Consensus 417 ~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------~ 484 (720)
..+..|++.+|..++.-.+-.+-..++-++.|+....+ +
T Consensus 409 -----------------------------yLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~y 459 (526)
T COG5064 409 -----------------------------YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIY 459 (526)
T ss_pred -----------------------------HHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHH
Confidence 34456678888888877665566666677766644321 2
Q ss_pred chhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhcccccccC
Q 004992 485 RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVD 530 (720)
Q Consensus 485 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~ 530 (720)
...+.+.|++..+..+-.+.+.++-..|-..+...-....+...+.
T Consensus 460 a~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~la 505 (526)
T COG5064 460 AVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELA 505 (526)
T ss_pred HHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcC
Confidence 2334458999999999999999999899888887775554444433
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-33 Score=259.31 Aligned_cols=400 Identities=22% Similarity=0.266 Sum_probs=347.1
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (720)
+.+++..+++. |+.++..+-..++|++-+.+++..+++.++++.|+.-+-.+.. ++|..+..
T Consensus 87 ~epvl~llqs~------d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v------------evqcnaVg 148 (550)
T KOG4224|consen 87 NEPVLALLQSC------DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV------------EVQCNAVG 148 (550)
T ss_pred hhHHHHHHhCc------chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc------------EEEeeehh
Confidence 34444444444 7778999999999999988888888889999988776666666 78999999
Q ss_pred HHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC
Q 004992 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (720)
Q Consensus 139 ~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (720)
+++||+.-.+++..+...|++.++.++-+..+. .+++++..+|.++.. ..++|+.++..|++|.|+.++++
T Consensus 149 CitnLaT~d~nk~kiA~sGaL~pltrLakskdi--------rvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s 219 (550)
T KOG4224|consen 149 CITNLATFDSNKVKIARSGALEPLTRLAKSKDI--------RVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKS 219 (550)
T ss_pred hhhhhhccccchhhhhhccchhhhHhhcccchh--------hHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhcc
Confidence 999999668889999999999999996555544 899999999999998 77788999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCChhcHHHHHhCC--CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHH
Q 004992 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (720)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g--~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L 296 (720)
++..++..++.++.+++- +..+++.+++++ ++|.|+.++.++++.++..|..+|.|++.+ ......+.++|.+|.+
T Consensus 220 ~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~l 297 (550)
T KOG4224|consen 220 GDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLL 297 (550)
T ss_pred CChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHH
Confidence 999999999999999996 778889998877 999999999999999999999999999866 4556788999999999
Q ss_pred HHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCC-HHHHHHHHHHHHHHhhhhcCcchhhhhhh
Q 004992 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQVITDMHNQAGIAH 375 (720)
Q Consensus 297 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~l~~ 375 (720)
+.+++++......+...++.|++- .+-+...+.+.|++.+|+.+|+..+ .+++.+|..+|+||+. .+..++..+.+
T Consensus 298 v~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa--sse~n~~~i~e 374 (550)
T KOG4224|consen 298 VELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA--SSEHNVSVIRE 374 (550)
T ss_pred HHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh--hhhhhhHHHhh
Confidence 999999888888888999999974 5677788999999999999998754 5699999999999998 46678899999
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHH
Q 004992 376 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 455 (720)
Q Consensus 376 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 455 (720)
+|+++.+..++.+..-.+|.....++..|+.+...+..+.+.|.++.
T Consensus 375 sgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~i--------------------------------- 421 (550)
T KOG4224|consen 375 SGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPI--------------------------------- 421 (550)
T ss_pred cCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcce---------------------------------
Confidence 99999999999999999999999999999999988888888886554
Q ss_pred HHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhc------cCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 456 LLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID------GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 456 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
|+.+..+.+.+++.+|+.+|.||+.+.++...+.+ .|.-..|..++.+.+..++..+.+.+.+|.++.
T Consensus 422 LIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 422 LIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred eecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 56688889999999999999999998774433333 234457888888988899999999999999864
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-33 Score=261.95 Aligned_cols=379 Identities=27% Similarity=0.357 Sum_probs=336.9
Q ss_pred CCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 103 ~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
....++++-++++.+. .++..+...++|++.+.+.+-.++..+++..|+.-+..+.. +++
T Consensus 84 res~epvl~llqs~d~------------~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v--------evq 143 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDK------------CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV--------EVQ 143 (550)
T ss_pred hhhhhHHHHHHhCcch------------hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc--------EEE
Confidence 4467788888888877 89999999999999666777777888899988888777666 899
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCC
Q 004992 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (720)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~ 262 (720)
..++.|+.||+.. +.++..+...|++..+.++-++.+..++.++..+|.+++. ..++++.++.+|++|.|+.++++.+
T Consensus 144 cnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d 221 (550)
T KOG4224|consen 144 CNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGD 221 (550)
T ss_pred eeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCC
Confidence 9999999999985 6678888899999999999999999999999999999996 8899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcchHHHHHHcC--ChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHH
Q 004992 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (720)
Q Consensus 263 ~~v~~~a~~~L~nL~~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 340 (720)
.+++..|+.+++|++.+ ...++.+.+.+ +++.|++++.++++.++-.|..+|.|+++ +..+...+++.|.+|.+++
T Consensus 222 ~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~ 299 (550)
T KOG4224|consen 222 LDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVE 299 (550)
T ss_pred hhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHH
Confidence 99999999999999755 56678888887 99999999999999999999999999986 6788889999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCC-ChhHHHHHHHHHHhccc-CCCchhHHHhhc
Q 004992 341 MLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLAD-NEDNVADFIRVG 418 (720)
Q Consensus 341 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~ 418 (720)
+++++.-....+.+.++.|++- .+-+...+.+.|++.+|+++|... +.+++..|..+|+||+. ...+...+.++|
T Consensus 300 Llqs~~~plilasVaCIrnisi---hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg 376 (550)
T KOG4224|consen 300 LLQSPMGPLILASVACIRNISI---HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG 376 (550)
T ss_pred HHhCcchhHHHHHHHHHhhccc---ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC
Confidence 9999888888889999999999 888889999999999999999665 56699999999999987 667777777777
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHH
Q 004992 419 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 498 (720)
Q Consensus 419 ~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~ 498 (720)
+ ++.+..++.++...+|.....++..|+.....+..+.+.|.+|.|+
T Consensus 377 A---------------------------------i~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLI 423 (550)
T KOG4224|consen 377 A---------------------------------IPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILI 423 (550)
T ss_pred c---------------------------------hHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceee
Confidence 5 4457789999999999999999999999998899999999999999
Q ss_pred HhhcCCCchhhhhHHHHHHHHHhhcccccccCCCCCCCCcccc
Q 004992 499 GLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVY 541 (720)
Q Consensus 499 ~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~~~~ 541 (720)
.++.+.+.+++..|+.+|.|++++...+..+...+..|.+.++
T Consensus 424 p~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~ 466 (550)
T KOG4224|consen 424 PWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQ 466 (550)
T ss_pred cccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHH
Confidence 9999999999999999999999988766666655555554443
No 9
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=242.13 Aligned_cols=157 Identities=20% Similarity=0.317 Sum_probs=146.7
Q ss_pred hhhhcCCCcceEEEEEC-CeEEehhHHHHhhcchhHhhcccCCcCCCC-CCceecCCCCHHHHHHHHHHHhcCCcccChh
Q 004992 544 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGGYREKD-ARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 621 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~-~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~ 621 (720)
+.++.++.++||++.++ |+.|+|||.||+++|+||++||+++|+|.. +..|.|.++++++|+.+|+|+|||. ++.+
T Consensus 17 ~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~ 94 (557)
T PHA02713 17 SNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSM 94 (557)
T ss_pred HHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHH
Confidence 56899999999999997 899999999999999999999999999864 7899999999999999999999997 6899
Q ss_pred hHHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhhhcHHH
Q 004992 622 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 701 (720)
Q Consensus 622 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~ 701 (720)
++.+++.+|++|+++.+++.|++||.++++++||+.++.++..+++..|.+.|.+|+.+||.++.++++|.+|+.+.+.+
T Consensus 95 nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~~ 174 (557)
T PHA02713 95 NVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEILFD 174 (557)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999996554443
Q ss_pred H
Q 004992 702 I 702 (720)
Q Consensus 702 l 702 (720)
+
T Consensus 175 l 175 (557)
T PHA02713 175 I 175 (557)
T ss_pred H
Confidence 3
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=2e-22 Score=216.06 Aligned_cols=379 Identities=19% Similarity=0.219 Sum_probs=315.8
Q ss_pred HHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCC
Q 004992 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (720)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 158 (720)
....++..|.|++.++.....+.+.|+++.|+++|++.+. ++...++.+|.+|+-..+++..+.+.|+
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~------------ellil~v~fLkkLSi~~ENK~~m~~~gi 332 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENE------------ELLILAVTFLKKLSIFKENKDEMAESGI 332 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 5667888999999999999999999999999999998776 8999999999999988889999999999
Q ss_pred hHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 004992 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (720)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (720)
++.|.+++...+. +++..++++|.||+. ++..|..++..|++|.|+.+|.+++ .+..++.+|++++. +
T Consensus 333 V~kL~kLl~s~~~--------~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~-d 400 (708)
T PF05804_consen 333 VEKLLKLLPSENE--------DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSM-D 400 (708)
T ss_pred HHHHHHHhcCCCH--------HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhcc-C
Confidence 9999999988766 899999999999999 7778999999999999999998754 55679999999997 7
Q ss_pred hhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHH
Q 004992 239 DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (720)
Q Consensus 239 ~~~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (720)
+..+..+..++++|.++.++.+ +++.+...+++++.|++.+ +...+.+.+.|+++.|+.........+ ....+.|
T Consensus 401 d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRN 476 (708)
T PF05804_consen 401 DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRN 476 (708)
T ss_pred HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHH
Confidence 7889999999999999997654 5667788889999999866 566688888899999998876543322 3468999
Q ss_pred HhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCcchh-hhhhhcCCHHHHHHHhcCC--ChhH
Q 004992 318 FAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITDMHNQ-AGIAHNGGLVPLLKLLDSK--NGSL 393 (720)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~-~~l~~~~~i~~l~~ll~~~--~~~v 393 (720)
++..++..+..+. +.+..|+..+.. .+++....++++|+|+.. .+... ..+.+.+.+|.+.+++..+ +.++
T Consensus 477 iS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~---~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl 551 (708)
T PF05804_consen 477 ISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTI---PDLDWAQLLQEYNLLPWLKDLLKPGASEDDL 551 (708)
T ss_pred HHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhccc---CCcCHHHHHHhCCHHHHHHHHhCCCCCChHH
Confidence 9876655555443 366777777765 578899999999999997 44333 4444678999999999543 5578
Q ss_pred HHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc--chhHHHHH
Q 004992 394 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRV 471 (720)
Q Consensus 394 ~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~--~~~v~~~a 471 (720)
...++..++.++.++.+...+.+.| +++.|+.+++.. +.++..+.
T Consensus 552 ~LE~Vi~~gtla~d~~~A~lL~~sg---------------------------------li~~Li~LL~~kqeDdE~VlQi 598 (708)
T PF05804_consen 552 LLEVVILLGTLASDPECAPLLAKSG---------------------------------LIPTLIELLNAKQEDDEIVLQI 598 (708)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhCC---------------------------------hHHHHHHHHHhhCchHHHHHHH
Confidence 8889999999998887766666655 566777888764 68899999
Q ss_pred HHHHHhhcCCcccchhhhc-cCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 472 ALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 472 ~~~L~~l~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+.++..+..+++.+..+.. .++..-|+.++.++++++|..|-.+|--++...
T Consensus 599 l~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 599 LYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999887776644 677889999999999999999999999888765
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=1.7e-24 Score=232.73 Aligned_cols=156 Identities=28% Similarity=0.458 Sum_probs=151.6
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhH
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 623 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 623 (720)
+.++..+.++||++.+++++|+|||.||++.|+||++||.++++|+.+.+|.+.++++++++.+++|+|||.+.++.+++
T Consensus 28 ~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nV 107 (571)
T KOG4441|consen 28 NELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNV 107 (571)
T ss_pred HHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhhhcH
Q 004992 624 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRII 699 (720)
Q Consensus 624 ~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~ 699 (720)
.+++.+|++||++.+.+.|.+||..+++++||+.+..+|+.|++..|.+.+..|+.+||.++.++++|..|+.+.+
T Consensus 108 q~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l 183 (571)
T KOG4441|consen 108 QELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEEL 183 (571)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999955533
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=7.1e-25 Score=234.04 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=137.7
Q ss_pred hhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceec--CCCCHHHHHHHHHHHhcCCcccChhh
Q 004992 545 QFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI--PNIRWEVFELMMRFIYTGSVDVTLDI 622 (720)
Q Consensus 545 ~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Yt~~~~~~~~~ 622 (720)
.+.-.+.++||.+.+ |++|+|||.||++.|+||++||+++|+|+++ .+.+ .++++++++.+|+|+|||++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~n 92 (480)
T PHA02790 15 ALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHN 92 (480)
T ss_pred HHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEeccc
Confidence 356678899977654 5599999999999999999999999999965 4555 38999999999999999999999999
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCC--hhhHhhh
Q 004992 623 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTR--PGHSNLI 695 (720)
Q Consensus 623 ~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~--~~f~~l~ 695 (720)
+.+++.+|++|+++.+++.|++||.++++++||++++.+|+.|++..|.+.+.+||.+||.++.++ ++|..|+
T Consensus 93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 93 VVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999986 8998775
No 13
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=236.13 Aligned_cols=151 Identities=23% Similarity=0.423 Sum_probs=143.9
Q ss_pred cCCCcceEEEEE--CCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhHHH
Q 004992 548 NNATLSDVTFLV--EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQD 625 (720)
Q Consensus 548 ~~~~~~Dv~~~~--~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 625 (720)
.++.+||+++.+ +|++|+|||.||+++|+||++||.++|+ +..|.+++ ++++|+.+|+|+|||++.++.+++.+
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHH
Confidence 388999999998 9999999999999999999999999987 56899999 99999999999999999999999999
Q ss_pred HHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhhhcHHHH
Q 004992 626 LLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 702 (720)
Q Consensus 626 ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~l 702 (720)
++.+|++|+++.|++.|+++|...++.+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|+.+.+..+
T Consensus 81 ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~l 157 (534)
T PHA03098 81 ILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKI 157 (534)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987655544
No 14
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.91 E-value=2.4e-21 Score=207.85 Aligned_cols=357 Identities=21% Similarity=0.254 Sum_probs=295.5
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
+.++.++..|.+. +.++...++..|.+++-..+++..+.+.|+++.|.+++.+.+. +++..+
T Consensus 290 ~iV~~Lv~~Ldr~------n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~------------~l~~~a 351 (708)
T PF05804_consen 290 GIVSLLVKCLDRE------NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE------------DLVNVA 351 (708)
T ss_pred CCHHHHHHHHcCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH------------HHHHHH
Confidence 3444455554433 5668999999999999999999999999999999999998777 899999
Q ss_pred HHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh
Q 004992 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (720)
Q Consensus 137 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 216 (720)
+++|.||+.+++.|..++..|++|.|+.+|.++ ..+..++.+|++++. +++.+..+...+++|.+++++
T Consensus 352 LrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----------~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 352 LRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP----------NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQML 420 (708)
T ss_pred HHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC----------chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHH
Confidence 999999999999999999999999999999864 455679999999998 667888899899999999876
Q ss_pred -cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHH
Q 004992 217 -EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (720)
Q Consensus 217 -~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~ 295 (720)
..+++.+...++..+.|++. ++.+.+.+.+.|+++.|++..-.....+ .+..+.|++.+++..+..+ .+.+..
T Consensus 421 l~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f--~~~i~~ 494 (708)
T PF05804_consen 421 LENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELF--VDFIGD 494 (708)
T ss_pred HhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHH--HHHHHH
Confidence 44567778888999999997 7888899999899999998765543333 3579999998865544433 246777
Q ss_pred HHHhhccC-ChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHHHhhhhcCcchhhh
Q 004992 296 VIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVITDMHNQAG 372 (720)
Q Consensus 296 L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 372 (720)
|+..+..+ +++...+++++|+|++..+.+....+.+.+++|.+...|.. ..+++...++-.++.++. ++.....
T Consensus 495 L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~---d~~~A~l 571 (708)
T PF05804_consen 495 LAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS---DPECAPL 571 (708)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC---CHHHHHH
Confidence 77777654 68899999999999987555666666678999999999976 356789999999999998 8888899
Q ss_pred hhhcCCHHHHHHHhcC--CChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhh
Q 004992 373 IAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 450 (720)
Q Consensus 373 l~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (720)
+.+.|.++.|+.+++. .+.++..+.++++.++..+++.+..++.. .
T Consensus 572 L~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~--------------------------------~ 619 (708)
T PF05804_consen 572 LAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE--------------------------------T 619 (708)
T ss_pred HHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc--------------------------------c
Confidence 9999999999999954 47889999999999999998887766653 2
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc
Q 004992 451 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 483 (720)
Q Consensus 451 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 483 (720)
++...|+.++++.++++|..|-.+|--++....
T Consensus 620 ~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 620 EIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 356689999999999999999999988876554
No 15
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.90 E-value=3.8e-24 Score=202.62 Aligned_cols=161 Identities=30% Similarity=0.502 Sum_probs=153.6
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCccc---Ch
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV---TL 620 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~---~~ 620 (720)
..++....++||+|++++++|++||.||++||.||++|+.++|.|+++..|.+++-+.++|+.+|+|+|||++.+ ..
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~e 115 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEE 115 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchH
Confidence 467888999999999999999999999999999999999999999999999999999999999999999999984 56
Q ss_pred hhHHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhhhcHH
Q 004992 621 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIP 700 (720)
Q Consensus 621 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~ 700 (720)
+.+.+.+.+|++|++++|.....+++.+.+..+|++.++..|..|+.++|.+.|..|..+|..+++..+.|..|+++.+.
T Consensus 116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~ 195 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLK 195 (620)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 004992 701 EIHN 704 (720)
Q Consensus 701 ~l~~ 704 (720)
+++.
T Consensus 196 e~l~ 199 (620)
T KOG4350|consen 196 ELLA 199 (620)
T ss_pred HHHh
Confidence 7754
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=3.6e-19 Score=165.89 Aligned_cols=403 Identities=16% Similarity=0.169 Sum_probs=303.3
Q ss_pred cchhcccchhhhccchhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc-
Q 004992 14 RKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK- 92 (720)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~- 92 (720)
+.+-.+...+.++||+.++....+++........... .. +...+..+...+.. ...+....|.+++.
T Consensus 22 ~m~peea~~e~I~qfe~qgi~l~nIik~~sv~~~~~q--p~----i~~~~~~i~e~i~~------~~~E~s~ll~~l~d~ 89 (461)
T KOG4199|consen 22 SMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQTGQ--PV----INETVDKIKEHIGQ------KLEETTELLEQLADE 89 (461)
T ss_pred hcCccccchHHHHHHHhccCcccccccccCCCCCCCC--cc----HHHhHHHHHHHHHh------hhHHHHHHHHHHHHH
Confidence 4455566778899999999999888877542222221 11 22223333333221 12333344444443
Q ss_pred ---ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhc
Q 004992 93 ---NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKR 168 (720)
Q Consensus 93 ---~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~ 168 (720)
+...+-.-.+.|..+.++.+++..+.. +..+..+++.+|..+. ..|++ .+..++..++.+|..
T Consensus 90 ck~~~A~r~la~~~ga~~~~it~~~la~~~---------~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~ 156 (461)
T KOG4199|consen 90 CKKSLAHRVLAGKNGAHDALITLLELAESP---------NESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLAL 156 (461)
T ss_pred HhhhHHHHHHhccCCCcchhhhHHHHhhCC---------chhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhc
Confidence 234444555678888888777642221 1167788888998888 66665 566789999999987
Q ss_pred cCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC-CCHHHHHHHHHHHHHhccCCh--------
Q 004992 169 HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKND-------- 239 (720)
Q Consensus 169 ~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~-------- 239 (720)
..++. ++....+.++..-|..++.+|+.+++.++++.+.+.+.. +...+.+.++++++.|..+++
T Consensus 157 ~~~~~------dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~a 230 (461)
T KOG4199|consen 157 KVESE------EVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQA 230 (461)
T ss_pred ccchH------HHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchh
Confidence 76654 888999999999999999999999999999999976654 445688889999999997443
Q ss_pred -hcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCC-h---HHHHHHHH
Q 004992 240 -ENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-S---ESQREAAL 313 (720)
Q Consensus 240 -~~~~~i~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~---~~~~~a~~ 313 (720)
...+.++..|++..|+..++.. +|++...++.+|..|+.. +++++.+.+.|+++.++.++.+++ . ...+.++.
T Consensus 231 h~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~ls 309 (461)
T KOG4199|consen 231 HGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLS 309 (461)
T ss_pred hHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 3356777888899999998763 688888899999999765 778899999999999999999854 3 34577889
Q ss_pred HHHHHhccCcchhhHHHhcCChHHHHHHhc--CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc--CC
Q 004992 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD--SK 389 (720)
Q Consensus 314 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~--~~ 389 (720)
.|..++ +++..+..+++.|+.+.++.++. ..+|.+.+.++.+++.++. +.+++...+++.|+-...++.++ ..
T Consensus 310 lLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~L--R~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 310 LLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCL--RSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHh--cCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 999997 57789999999999999999984 3789999999999999998 78899999999999999999884 34
Q ss_pred ChhHHHHHHHHHHhccc-CCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHH
Q 004992 390 NGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQ 468 (720)
Q Consensus 390 ~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~ 468 (720)
...+++++|+.|+|+.. ..+++..++..| ++.|+..-+..++..+
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~G----------------------------------iE~Li~~A~~~h~tce 432 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLANG----------------------------------IEKLIRTAKANHETCE 432 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhcc----------------------------------HHHHHHHHHhcCccHH
Confidence 67899999999999954 566665655544 4556777778888888
Q ss_pred HHHHHHHHhhcCCcccc
Q 004992 469 RRVALALAHLCSPDDQR 485 (720)
Q Consensus 469 ~~a~~~L~~l~~~~~~~ 485 (720)
..+-.+|..|-.+...+
T Consensus 433 ~~akaALRDLGc~v~lr 449 (461)
T KOG4199|consen 433 AAAKAALRDLGCDVYLR 449 (461)
T ss_pred HHHHHHHHhcCcchhhH
Confidence 88888888886665433
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.82 E-value=5.7e-18 Score=163.04 Aligned_cols=424 Identities=17% Similarity=0.137 Sum_probs=318.4
Q ss_pred HHHHHHHHHHHHccChhhHHHHHh----CCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHH
Q 004992 79 AAKRATHVLAELAKNEEVVNWIVE----GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (720)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~ 153 (720)
++..+..+++..+.++..|..+.. .|.++.|.+...+++. ++..++.++|+|+| ++.+.|..+
T Consensus 58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~------------ev~~Q~~RaLgNiCydn~E~R~a~ 125 (604)
T KOG4500|consen 58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT------------EVHEQCFRALGNICYDNNENRAAF 125 (604)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc------------cHHHHHHHHHhhhhccCchhHHHH
Confidence 677778888888877665555554 4566666666666655 89999999999999 999999999
Q ss_pred HHcCChHHHHHHHhccCC--CccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc--CCCHHHHHHHHH
Q 004992 154 VDNGALSHLVNLLKRHMD--SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAG 229 (720)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~--~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~ 229 (720)
.+.|+-+.++.+|+.... .+... +....++..|.|..-+++..+....+.|+++.|...+. ..+....+..+.
T Consensus 126 ~~lgGaqivid~L~~~cs~d~~ane---~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~ 202 (604)
T KOG4500|consen 126 FNLGGAQIVIDVLKPYCSKDNPANE---EYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLA 202 (604)
T ss_pred HhcCCceehHhhhccccccCCccHH---HHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHh
Confidence 999998888888875322 11222 77888999999999989999999999999999988774 345555566666
Q ss_pred HHHHhccCChh-cHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC-Ch-
Q 004992 230 ALRTLAFKNDE-NKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CS- 305 (720)
Q Consensus 230 ~L~~L~~~~~~-~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~- 305 (720)
...|+..-..+ ......+..+.-.+++++.+ -++++++.+...+...+. ++..+-.+.+.|.+..++++++.- +.
T Consensus 203 ~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t 281 (604)
T KOG4500|consen 203 PFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFT 281 (604)
T ss_pred ccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhccccc
Confidence 66665531112 23344556677778888765 367888888999998864 577778889999999999999762 11
Q ss_pred ------HHHHHHHHHHHHHhccCcchhhHHHhcC-ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCC
Q 004992 306 ------ESQREAALLLGQFAATDSDCKVHIVQRG-AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGG 378 (720)
Q Consensus 306 ------~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~ 378 (720)
..-..++....-+..++ +....+...+ ++..+.+|+.+++......+.-+++|+++ .+.++..+++.++
T Consensus 282 ~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR---~D~~ci~~v~~~~ 357 (604)
T KOG4500|consen 282 KKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR---RDDICIQLVQKDF 357 (604)
T ss_pred chHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc---cchHHHHHHHHHH
Confidence 12233444444444433 4455555555 89999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHhc-----CCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhh--------HHHHHHHHHHHH
Q 004992 379 LVPLLKLLD-----SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT--------KDCVAKTLKRLE 445 (720)
Q Consensus 379 i~~l~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~--------~~~~~~~~~~l~ 445 (720)
+..+++++. ++|.+++.+++.+|+|+.-...++..+..+|+++.+.......+++ .....+.-..+.
T Consensus 358 ~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a 437 (604)
T KOG4500|consen 358 LNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIA 437 (604)
T ss_pred HHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHH
Confidence 999999983 3577899999999999999889999999999887654422221111 122222222111
Q ss_pred H--hhhhhhHHHHHHHHHhcchh-HHHHHHHHHHhhcCCccc---chhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHH
Q 004992 446 E--KIHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDDQ---RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 519 (720)
Q Consensus 446 ~--~~~~~~~~~L~~ll~~~~~~-v~~~a~~~L~~l~~~~~~---~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L 519 (720)
. .-+...+.+|+++.++++.. |-....+.+..+..+... ...+.+.|++..++.++...+-..|..|..+++-+
T Consensus 438 ~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 438 CELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred HHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 1 12567899999999999876 888999999999877543 34567889999999999999999999999999887
Q ss_pred Hhh
Q 004992 520 ANK 522 (720)
Q Consensus 520 ~~~ 522 (720)
+..
T Consensus 518 ~~~ 520 (604)
T KOG4500|consen 518 ESK 520 (604)
T ss_pred HHH
Confidence 754
No 18
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.80 E-value=2.2e-19 Score=153.62 Aligned_cols=158 Identities=23% Similarity=0.463 Sum_probs=134.6
Q ss_pred chhhhhcCCCcceEEEEECC---eEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCccc
Q 004992 542 LGDQFVNNATLSDVTFLVEG---RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV 618 (720)
Q Consensus 542 ~~~~~~~~~~~~Dv~~~~~~---~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~ 618 (720)
....++....++|++|.++| +.+++||.||++||++++ |..+- ..++.+..+.|.++++|..+++|+||+.+++
T Consensus 56 itadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~-dekse~~~~dDad~Ea~~t~iRWIYTDEidf 132 (280)
T KOG4591|consen 56 ITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGG-DEKSEELDLDDADFEAFHTAIRWIYTDEIDF 132 (280)
T ss_pred HHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCC-CcchhhhcccccCHHHHHHhheeeecccccc
Confidence 34568889999999999984 889999999999999986 32211 1224467788999999999999999999885
Q ss_pred --ChhhHHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhh
Q 004992 619 --TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 696 (720)
Q Consensus 619 --~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~ 696 (720)
+...+.+++.+|++|+++.|++.|+.-+...++++||+.+|.+|+..+..+|.+.|..+|..+|+++- ..+|..++.
T Consensus 133 k~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a~FaqMs~ 211 (280)
T KOG4591|consen 133 KEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KADFAQMSA 211 (280)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hHHHHhccH
Confidence 55667899999999999999999999999999999999999999999999999999999999999985 456888866
Q ss_pred hcHHHHH
Q 004992 697 RIIPEIH 703 (720)
Q Consensus 697 ~~~~~l~ 703 (720)
..+..++
T Consensus 212 aLLYklI 218 (280)
T KOG4591|consen 212 ALLYKLI 218 (280)
T ss_pred HHHHHHH
Confidence 5544443
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.79 E-value=1.6e-17 Score=180.51 Aligned_cols=360 Identities=19% Similarity=0.217 Sum_probs=283.9
Q ss_pred HHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhh---HHHHHH
Q 004992 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH---QQLIVD 155 (720)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~---~~~~~~ 155 (720)
+++..+.|..++.+++.+..++..|+++.|+++|..++.. +.+.|..|-.+|.||. ..|+- |+.+..
T Consensus 211 ~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~---------~kear~~A~aALHNIVhSqPD~kr~RRE~kv 281 (2195)
T KOG2122|consen 211 EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDE---------DKEARKRASAALHNIVHSQPDEKRGRREKKV 281 (2195)
T ss_pred HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchh---------hHHHHHHHHHHHHHHhhcCcchhhhHHHHHH
Confidence 5678889999999999999999999999999999876552 3388999999999999 55544 333322
Q ss_pred cCChHHHHHHHh-------ccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC----------
Q 004992 156 NGALSHLVNLLK-------RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF---------- 218 (720)
Q Consensus 156 ~~~l~~L~~lL~-------~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---------- 218 (720)
..++..+...+. .............-+..|+..|..+++ +++.|..+.+.|++..+-+|+.-
T Consensus 282 L~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tn 360 (2195)
T KOG2122|consen 282 LHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETN 360 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC
Confidence 233332222221 111111111112444577888888888 78899999999999999887741
Q ss_pred --CCHHHHHHHHHHHHHhccCChhcHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-hHHHHHHcCChH
Q 004992 219 --TDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQ 294 (720)
Q Consensus 219 --~~~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~-~~~~~~~~~~l~ 294 (720)
....+|..+..+|-||+.++..++..+. ..|++..++..|.+...++......+|.||+-..+. .++.+.+.|-+.
T Consensus 361 d~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVt 440 (2195)
T KOG2122|consen 361 DGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVT 440 (2195)
T ss_pred cHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHH
Confidence 1267999999999999999888888876 578999999999998889999999999999855444 455566788888
Q ss_pred HHHHhh-ccCChHHHHHHHHHHHHHhccCcchhhHHHh-cCChHHHHHHhcC----CCHHHHHHHHHHHHHHhhhh-cCc
Q 004992 295 PVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQS----PDVQLREMSAFALGRLAQVI-TDM 367 (720)
Q Consensus 295 ~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~-~~~ 367 (720)
.|.... ........+.++.+|+||+.++.+++..+.. .|++..|+.+|.- ..-.+.+.|-++|.|++.+. ...
T Consensus 441 aLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E 520 (2195)
T KOG2122|consen 441 ALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCE 520 (2195)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccc
Confidence 888775 4555678889999999999999999888876 6899999999954 45689999999999988733 345
Q ss_pred chhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhc-ccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHH
Q 004992 368 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 446 (720)
Q Consensus 368 ~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~ 446 (720)
.+++.+.+.+.+..|++.|++..-.+..++|.+|||| +++++..+.+++.|+++
T Consensus 521 ~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~------------------------- 575 (2195)
T KOG2122|consen 521 DYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVP------------------------- 575 (2195)
T ss_pred hHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHH-------------------------
Confidence 6788888999999999999999999999999999999 56888888888877555
Q ss_pred hhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCc
Q 004992 447 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 447 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 482 (720)
.|..++++.+..+-+.++.+|.||....
T Consensus 576 --------mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 576 --------MLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred --------HHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 4666889999999999999999997665
No 20
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.76 E-value=8.1e-18 Score=164.62 Aligned_cols=162 Identities=28% Similarity=0.455 Sum_probs=146.4
Q ss_pred hhhcCCCcceEEEEECC-----eEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccC
Q 004992 545 QFVNNATLSDVTFLVEG-----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT 619 (720)
Q Consensus 545 ~~~~~~~~~Dv~~~~~~-----~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~ 619 (720)
.++.+...+|+.|++++ ..+|+||.+|+..|++|.+||.+++.+....+|.+||+.+.+|..+|+|+|++.+.+.
T Consensus 107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~ 186 (521)
T KOG2075|consen 107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLA 186 (521)
T ss_pred hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhh
Confidence 35778889999999974 6899999999999999999999999999888999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHH-HHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhhhc
Q 004992 620 LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL-SEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRI 698 (720)
Q Consensus 620 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~-a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~ 698 (720)
.+++..++.+|++|.++.|...|.++|..++...|.+..+-. |..++.++|...|++-|..++.+....++|.++...
T Consensus 187 ~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~- 265 (521)
T KOG2075|consen 187 ADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDST- 265 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhH-
Confidence 999999999999999999999999999999888887776666 999999999999999999999999999999998632
Q ss_pred HHHHHHHHH
Q 004992 699 IPEIHNYFA 707 (720)
Q Consensus 699 ~~~l~~~~~ 707 (720)
...+.+.++
T Consensus 266 ~dt~~evl~ 274 (521)
T KOG2075|consen 266 RDTYEEVLR 274 (521)
T ss_pred HHHHHHHHh
Confidence 333444333
No 21
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.76 E-value=1.1e-16 Score=167.55 Aligned_cols=362 Identities=23% Similarity=0.243 Sum_probs=274.1
Q ss_pred hHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHH
Q 004992 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (720)
Q Consensus 106 i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (720)
+|-.+.+|.+.+. .++-.|+..+..+| .+.+.+..+...|+|+.|+.+|..... +|+..
T Consensus 235 lpe~i~mL~~q~~------------~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~--------evq~~ 294 (717)
T KOG1048|consen 235 LPEVISMLMSQDP------------SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND--------EVQRQ 294 (717)
T ss_pred cHHHHHHHhccCh------------hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH--------HHHHH
Confidence 4455566666555 78999999999999 888999999999999999999999888 99999
Q ss_pred HHHHHHHhhhcCch--hhHHHHhcCCcHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC
Q 004992 185 AADAITNLAHENSS--IKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (720)
Q Consensus 185 a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~ 261 (720)
|+++|.||..+... ++-.+.+.++++.++++|+. .|.++++.+..+|+||+. ++..+..++.. .+..|...+-.+
T Consensus 295 acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~~-al~tLt~~vI~P 372 (717)
T KOG1048|consen 295 ACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDALKMLIITS-ALSTLTDNVIIP 372 (717)
T ss_pred HHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHHH-HHHHHHHhhccc
Confidence 99999999976665 78888999999999999986 789999999999999997 56666666654 677766544211
Q ss_pred --------------CHHHHHHHHHHHHHhhcCCcchHHHHHH-cCChHHHHHhhcc------CChHHHHHHHHHHHHHhc
Q 004992 262 --------------DSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSS------CCSESQREAALLLGQFAA 320 (720)
Q Consensus 262 --------------~~~v~~~a~~~L~nL~~~~~~~~~~~~~-~~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~ 320 (720)
+.++...+..+|.|++....+.++.+.+ .|+|+.|+..+++ .+....++|+.++.|++-
T Consensus 373 ~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 373 HSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 3567889999999999866777777766 6789999988873 356677888999999852
Q ss_pred cCc-------------------------------chhhH----------------------HHhcCChHHHHHHhc-CCC
Q 004992 321 TDS-------------------------------DCKVH----------------------IVQRGAVRPLIEMLQ-SPD 346 (720)
Q Consensus 321 ~~~-------------------------------~~~~~----------------------~~~~~~~~~L~~ll~-~~~ 346 (720)
--. ..... +....++..-+.+|. +.+
T Consensus 453 rl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n 532 (717)
T KOG1048|consen 453 RLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKN 532 (717)
T ss_pred hhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcc
Confidence 100 00000 111122333333343 467
Q ss_pred HHHHHHHHHHHHHHhhhhcCc--chhh-hhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccc
Q 004992 347 VQLREMSAFALGRLAQVITDM--HNQA-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 423 (720)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~~~~--~~~~-~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L 423 (720)
..+.++++++|-|++...+.. ..+. .+....+++.|++++..++..+...++.+|+||+.+..++..+.
T Consensus 533 ~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-------- 604 (717)
T KOG1048|consen 533 DNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-------- 604 (717)
T ss_pred hHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh--------
Confidence 889999999999999822111 1122 34778899999999999999999999999999999987754433
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcc------hhHHHHHHHHHHhhc-CCcccchhhhccCcHHH
Q 004992 424 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE------KGVQRRVALALAHLC-SPDDQRTIFIDGGGLEL 496 (720)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~------~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~~~ 496 (720)
+..++.|++.+.+.. .++...++.+|.++. .+..+.+.+.+.+++++
T Consensus 605 --------------------------k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~k 658 (717)
T KOG1048|consen 605 --------------------------KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPK 658 (717)
T ss_pred --------------------------cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHH
Confidence 345667777776553 577888999999997 55668888999999999
Q ss_pred HHHhhcCCCc-hhhhhHHHHHHHHHhhc
Q 004992 497 LLGLLGSTNP-KQQLDGAVALFKLANKA 523 (720)
Q Consensus 497 L~~ll~~~~~-~v~~~a~~aL~~L~~~~ 523 (720)
|+.+..+... .+-++|...|..|=.+.
T Consensus 659 L~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 659 LRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 9999988444 56666666666665443
No 22
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.75 E-value=1.2e-16 Score=173.73 Aligned_cols=350 Identities=21% Similarity=0.225 Sum_probs=267.1
Q ss_pred HHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHH---HH-------hhcCCCCcc
Q 004992 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPAL---VK-------HLQAPPTSE 120 (720)
Q Consensus 52 ~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L---~~-------ll~~~~~~~ 120 (720)
..+..+.++-++++|.-- ++.+.+.+..|-..|.|+..+ ++....-.+.-++..| .. +++......
T Consensus 230 amR~SgCLpLLvQilH~~---d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~ 306 (2195)
T KOG2122|consen 230 AMRRSGCLPLLVQILHGP---DDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAI 306 (2195)
T ss_pred HHHhccchHHHHHHhhCC---chhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344555666666665543 233666899999999999884 4433222222233332 22 222211100
Q ss_pred cccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCC----CccchhhhHHHHHHHHHHHHhhhcC
Q 004992 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD----SNCSRAVNSVIRRAADAITNLAHEN 196 (720)
Q Consensus 121 ~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~----~~~~~~~~~v~~~a~~~L~~l~~~~ 196 (720)
.+.++.+ -...|+.+|.+++.+++.|..+.+.|++..+-+|+.-... .+...-...+++++..+|.||.+++
T Consensus 307 ---apa~~~H-~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGD 382 (2195)
T KOG2122|consen 307 ---APASDEH-QLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGD 382 (2195)
T ss_pred ---CCcccch-hhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccccc
Confidence 1222222 2347888999999999999999999999999998864321 2222334489999999999999988
Q ss_pred chhhHHHH-hcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhc-HHHHHhCCCHHHHHH-hhcCCCHHHHHHHHHHH
Q 004992 197 SSIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLIL-MLRSEDSAIHYEAVGVI 273 (720)
Q Consensus 197 ~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~~~i~~~g~l~~L~~-ll~~~~~~v~~~a~~~L 273 (720)
..++..+. ..|++..++..|.+...++....+.+|+||+...+.+ ++.+.+.|-+..|.. .|........+..+.+|
T Consensus 383 v~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSAL 462 (2195)
T KOG2122|consen 383 VANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSAL 462 (2195)
T ss_pred ccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHH
Confidence 88776554 4589999999999988899999999999999865655 445556788887775 45566667788899999
Q ss_pred HHhhcCCcchHHHHHH-cCChHHHHHhhccC----ChHHHHHHHHHHHHHhc---cCcchhhHHHhcCChHHHHHHhcCC
Q 004992 274 GNLVHSSPNIKKEVLA-AGALQPVIGLLSSC----CSESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSP 345 (720)
Q Consensus 274 ~nL~~~~~~~~~~~~~-~~~l~~L~~ll~~~----~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L~~ll~~~ 345 (720)
|||+.+..+++..+.. .|.+..|+.+|... .-.+.+.+..+|.|++. .++..++.+.+.+++..|++.|++.
T Consensus 463 WNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~ 542 (2195)
T KOG2122|consen 463 WNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH 542 (2195)
T ss_pred hhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc
Confidence 9999888888777775 68899999999854 35677888888888763 4677888888999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCc
Q 004992 346 DVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 410 (720)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (720)
+..+..++|++||||.. ++++.++.+++.|+++.+..++++++..+.+.+..+|.||..+...
T Consensus 543 SLTiVSNaCGTLWNLSA--R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 543 SLTIVSNACGTLWNLSA--RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred ceEEeecchhhhhhhhc--CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 99999999999999998 6888999999999999999999999999999999999999876643
No 23
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.75 E-value=1.5e-16 Score=166.60 Aligned_cols=375 Identities=20% Similarity=0.257 Sum_probs=280.6
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
.+|+.+.+|.+. ++.++..|+.-+..++. +.+.+..+.+.|+|+.|+.++.+... +|+.+|
T Consensus 234 ~lpe~i~mL~~q------~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~------------evq~~a 295 (717)
T KOG1048|consen 234 TLPEVISMLMSQ------DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND------------EVQRQA 295 (717)
T ss_pred ccHHHHHHHhcc------ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH------------HHHHHH
Confidence 567778888765 66689999999999998 58888999999999999999999888 999999
Q ss_pred HHHHHHhc-cC--hhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHH
Q 004992 137 AFALGLLA-VK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (720)
Q Consensus 137 ~~~L~~L~-~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (720)
+++|.||. .. .+++-.+.+.++++.++.+|+...+. ++++.+..+|+||++. +..+..++ ...+..|.
T Consensus 296 cgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-------ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt 366 (717)
T KOG1048|consen 296 CGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-------EVRELITGILWNLSSN-DALKMLII-TSALSTLT 366 (717)
T ss_pred HHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcch-------HHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHH
Confidence 99999999 33 35888889999999999999986555 9999999999999984 55555444 34555655
Q ss_pred HhhcC----------C----CHHHHHHHHHHHHHhccCChhcHHHHHh-CCCHHHHHHhhcC------CCHHHHHHHHHH
Q 004992 214 ELLEF----------T----DTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRS------EDSAIHYEAVGV 272 (720)
Q Consensus 214 ~ll~~----------~----~~~v~~~a~~~L~~L~~~~~~~~~~i~~-~g~l~~L~~ll~~------~~~~v~~~a~~~ 272 (720)
..+-. + +..+..++..+|+|++....+.++.+.+ .|+|..|+..++. .+....++|+-+
T Consensus 367 ~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCi 446 (717)
T KOG1048|consen 367 DNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCI 446 (717)
T ss_pred HhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 43311 1 2568889999999999877888888875 7889999988862 355566778888
Q ss_pred HHHhhcCCcc-------------------------------hHHH----------------------HHHcCChHHHHHh
Q 004992 273 IGNLVHSSPN-------------------------------IKKE----------------------VLAAGALQPVIGL 299 (720)
Q Consensus 273 L~nL~~~~~~-------------------------------~~~~----------------------~~~~~~l~~L~~l 299 (720)
+.||+..... ..+. +....++...+.+
T Consensus 447 lRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~L 526 (717)
T KOG1048|consen 447 LRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLL 526 (717)
T ss_pred HhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHH
Confidence 8888743220 0000 0001133443444
Q ss_pred hc-cCChHHHHHHHHHHHHHhccCcchh----hH-HHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhh
Q 004992 300 LS-SCCSESQREAALLLGQFAATDSDCK----VH-IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGI 373 (720)
Q Consensus 300 l~-~~~~~~~~~a~~~L~~l~~~~~~~~----~~-~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l 373 (720)
+. +.++.+.+.++.+|.|++.+..... .. +.+..++|.++++|+.++..+...++.+|.||+. +..++..+
T Consensus 527 l~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~---d~rnk~li 603 (717)
T KOG1048|consen 527 LALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR---DIRNKELI 603 (717)
T ss_pred HHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc---Cchhhhhh
Confidence 43 3467889999999999997653322 22 3567899999999999999999999999999999 88888776
Q ss_pred hhcCCHHHHHHHhcCC------ChhHHHHHHHHHHhcc-cCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHH
Q 004992 374 AHNGGLVPLLKLLDSK------NGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 446 (720)
Q Consensus 374 ~~~~~i~~l~~ll~~~------~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~ 446 (720)
. .++++.|++.|... +.++...+|.+|.++. .+..+...+.+.++++.|.
T Consensus 604 g-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~---------------------- 660 (717)
T KOG1048|consen 604 G-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLR---------------------- 660 (717)
T ss_pred h-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHH----------------------
Confidence 6 78999999999543 3678899999999997 5778888888888777643
Q ss_pred hhhhhhHHHHHHHHHhc-chhHHHHHHHHHHhhcCCcccchhhhccCcHHH
Q 004992 447 KIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL 496 (720)
Q Consensus 447 ~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 496 (720)
-+.++. ++.+-..|...|..|=...+.+..+...|..+.
T Consensus 661 -----------~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g~~q~ 700 (717)
T KOG1048|consen 661 -----------LISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKKGFKQQ 700 (717)
T ss_pred -----------HHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHH
Confidence 333332 556666677777766555555555555555443
No 24
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.73 E-value=1.4e-17 Score=141.34 Aligned_cols=106 Identities=32% Similarity=0.661 Sum_probs=95.6
Q ss_pred hhhhcCCCcceEEEEEC-CeEEehhHHHHhhcchhHhhcccCC-cCCCCCCceecCCCCHHHHHHHHHHHhcCCcccC-h
Q 004992 544 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT-L 620 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~-~~~~~~h~~iL~~~s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~-~ 620 (720)
++++..+.++|++|.++ +..+++||.+|+++|+||+.+|.++ +.+.....|.++++++++|..+++|+|+|.+.++ .
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-T
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHH
Confidence 45788899999999999 7999999999999999999999987 5666666899999999999999999999999998 9
Q ss_pred hhHHHHHHHHhhhChHHHHHHHHHHHHhc
Q 004992 621 DIAQDLLRAADQYLLEGLKRLCEYTIAQD 649 (720)
Q Consensus 621 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 649 (720)
+++.+++.+|++|+++.|++.|+.+|.++
T Consensus 82 ~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999864
No 25
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.8e-14 Score=134.89 Aligned_cols=312 Identities=17% Similarity=0.244 Sum_probs=256.6
Q ss_pred HhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHH
Q 004992 75 ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (720)
Q Consensus 75 ~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~ 152 (720)
.+..+...++.+|..+..+ |+ +.+..++..++.+|..... +.++.......+..-| .++.+|+.
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~----------~~dlt~~~~~~v~~Ac~~hE~nrQ~ 184 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVE----------SEEVTLLTLQWLQKACIMHEVNRQL 184 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccc----------hHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4555788888888888775 55 5667789999999976654 2288888899999988 89999999
Q ss_pred HHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCc---------hhhHHHHhcCCcHHHHHhhcCC-CHH
Q 004992 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---------SIKTRVRMEGGIPPLVELLEFT-DTK 222 (720)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~-~~~ 222 (720)
+++.++++.+...|...... .+.+...|++..+...++ ...+.+...|++..|++.+.-. ++.
T Consensus 185 ~m~~~il~Li~~~l~~~gk~-------~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 185 FMELKILELILQVLNREGKT-------RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred HHHhhHHHHHHHHHcccCcc-------HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 99999999999888876664 688889999999886432 2334577788889999988653 578
Q ss_pred HHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCH----HHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHH
Q 004992 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS----AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (720)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~----~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ 298 (720)
+...++.+|..|+. .++..+.+.+.|++..++.++.+.+. ...+.++..|..|+ +++..+..+++.|+.+.++.
T Consensus 258 ~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence 88899999999997 78888999999999999999988543 35578899999996 55778899999999999999
Q ss_pred hhc--cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHHhhhhcCcchhhhhh
Q 004992 299 LLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQVITDMHNQAGIA 374 (720)
Q Consensus 299 ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~l~ 374 (720)
++. ..+|.+..+++.++.-++-..++....+++.|+-...++.|+.. ...++++|++++.|++. ++..++..|.
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~--rs~~~~~~~l 413 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV--RSAENRTILL 413 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH--hhhhccchHH
Confidence 985 45788999999999999988899999999999999999999763 46799999999999998 3445555554
Q ss_pred hcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchh
Q 004992 375 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 412 (720)
Q Consensus 375 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 412 (720)
..+++.|+..-...++.....+..+|+-|..+...++
T Consensus 414 -~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre 450 (461)
T KOG4199|consen 414 -ANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLRE 450 (461)
T ss_pred -hccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHH
Confidence 5678999999999999999999999999966554433
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.71 E-value=3.8e-14 Score=151.73 Aligned_cols=396 Identities=19% Similarity=0.207 Sum_probs=288.7
Q ss_pred hHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHH
Q 004992 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~ 154 (720)
+.+....++.+|..+......... ..+..+.|...|.+++. .||..+++.+.++. ........+.
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~------------~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP------------KVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 444467777888887764222222 34567888899998877 99999999999999 5555567777
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (720)
+.++++.++.++.+.+. ++...|+.+|.+++... .....+...+.+..|..++..++..+|..+..++.++
T Consensus 117 ~~~l~~~i~~~L~~~d~--------~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDL--------SVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred CccHHHHHHHHHcCCcH--------HHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 89999999999998877 99999999999999844 4445577778899999999888889999999999999
Q ss_pred ccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHH------H
Q 004992 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES------Q 308 (720)
Q Consensus 235 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~------~ 308 (720)
+..+++....+.+.|+++.++..++++|.-++..++.+|..|+. .+...+.+.+.|+++.|..++.+...+- .
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l 266 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLL 266 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhh
Confidence 98889999999999999999999999999999999999999998 5667788999999999999997653221 1
Q ss_pred HHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhh-hhc-CCHHHHHH--
Q 004992 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGI-AHN-GGLVPLLK-- 384 (720)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l-~~~-~~i~~l~~-- 384 (720)
.......++++...+..... .-..++..+..++.+.++..+..|..+++.++. ..+.+..+ ... +.+..+++
T Consensus 267 ~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs---t~~G~~~L~~~~~~~~~~~l~~~ 342 (503)
T PF10508_consen 267 PGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGS---TVEGKQLLLQKQGPAMKHVLKAI 342 (503)
T ss_pred hhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC---CHHHHHHHHhhcchHHHHHHHHH
Confidence 22234556666532222111 112455666777788999999999999999998 77777766 333 33444444
Q ss_pred --HhcCCChhHHHHHHHHHHhcccCCCc--hhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHH-HHHHH
Q 004992 385 --LLDSKNGSLQHNAAFALYGLADNEDN--VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN-HLLYL 459 (720)
Q Consensus 385 --ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~L~~l 459 (720)
...+...+++..++.++.++...... -..+. .....+.....++... .++.+
T Consensus 343 ~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~-----------------------~~~~~w~~~~~~~~~~~~l~~~ 399 (503)
T PF10508_consen 343 GDAIKSGSTELKLRALHALASILTSGTDRQDNDIL-----------------------SITESWYESLSGSPLSNLLMSL 399 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH-----------------------HHHHHHHHHhcCCchHHHHHHH
Confidence 44566778999999999999543221 11111 1112222333333444 78888
Q ss_pred HHhcchhHHHHHHHHHHhhcCCcccchhhhcc-CcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 460 MRVAEKGVQRRVALALAHLCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 460 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
++.|=|++|..+.+.|..++..+-+.+.+... |.+.-|+.--.+.+.+.+++=-..+..|++.
T Consensus 400 ~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 400 LKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999876666555 4444444444445555555544555555543
No 27
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.71 E-value=2.3e-17 Score=170.15 Aligned_cols=162 Identities=21% Similarity=0.396 Sum_probs=144.5
Q ss_pred CCcceEEEEE-CCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhc-CCcc-----cChhh
Q 004992 550 ATLSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT-GSVD-----VTLDI 622 (720)
Q Consensus 550 ~~~~Dv~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~-----~~~~~ 622 (720)
++.-|+.|.+ +|+.++|||++|++|++||..||..-|.|+.+-.+....++.+.+..+|+|+|+ +... -..+.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 4445777777 557799999999999999999999999999886666666779999999999994 4433 24567
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhhhcHHHH
Q 004992 623 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 702 (720)
Q Consensus 623 ~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~l 702 (720)
+.+++.+||.|.+.+|+..|+..|.+.++..+|..++++|..|++..|+..|++||+.|+..++.......++...+..+
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l 867 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKL 867 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999888888888899999
Q ss_pred HHHHHHHhC
Q 004992 703 HNYFAKALT 711 (720)
Q Consensus 703 ~~~~~~~~~ 711 (720)
.+++++++.
T Consensus 868 ~~~yrkm~~ 876 (1267)
T KOG0783|consen 868 AQRYRKMLS 876 (1267)
T ss_pred HHHHHHHhh
Confidence 999999987
No 28
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.71 E-value=5.6e-17 Score=154.60 Aligned_cols=156 Identities=21% Similarity=0.373 Sum_probs=145.8
Q ss_pred cchhhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceec----CCCCHHHHHHHHHHHhcCCc
Q 004992 541 YLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI----PNIRWEVFELMMRFIYTGSV 616 (720)
Q Consensus 541 ~~~~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l----~~~~~~~~~~~l~~~Yt~~~ 616 (720)
+..+.++..+..+||.+.+-|.+++.||.-|+ .|+||++||+|.|+|++...|.+ |.++..+|..++.-+|.+.+
T Consensus 58 yiyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv 136 (488)
T KOG4682|consen 58 YIYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV 136 (488)
T ss_pred HHHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence 34467899999999999999999999999999 89999999999999999987766 45899999999999999999
Q ss_pred ccChhhHHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhh
Q 004992 617 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 696 (720)
Q Consensus 617 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~ 696 (720)
.|..+.+..++.+|.++++++|.+.|.+.+++.+++.+++.+|+.+.+|+...+.+.|.+++..|+-.+....-+.+++.
T Consensus 137 eI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~ 216 (488)
T KOG4682|consen 137 EIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISI 216 (488)
T ss_pred eccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777777765
Q ss_pred h
Q 004992 697 R 697 (720)
Q Consensus 697 ~ 697 (720)
+
T Consensus 217 ~ 217 (488)
T KOG4682|consen 217 N 217 (488)
T ss_pred H
Confidence 4
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.69 E-value=3e-14 Score=152.54 Aligned_cols=367 Identities=20% Similarity=0.171 Sum_probs=281.0
Q ss_pred HHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHH
Q 004992 109 LVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188 (720)
Q Consensus 109 L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~ 188 (720)
+...|.+.+. +....++.+|..+......... ..+..+.+...|.++++ .|+..+++.
T Consensus 43 lf~~L~~~~~------------e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~--------~Vr~l~l~~ 100 (503)
T PF10508_consen 43 LFDCLNTSNR------------EQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP--------KVRRLALKQ 100 (503)
T ss_pred HHHHHhhcCh------------HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH--------HHHHHHHHH
Confidence 7777776655 5667888899988843333222 45678889999998777 999999999
Q ss_pred HHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHH
Q 004992 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268 (720)
Q Consensus 189 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~ 268 (720)
|.++...+......+.+.+.++.++..+.+++..+...|+.+|.+++. .+...+.+.+.+.++.|..++..+++.+|..
T Consensus 101 l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~R 179 (503)
T PF10508_consen 101 LGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCR 179 (503)
T ss_pred HHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHH
Confidence 999998776666777888999999999999999999999999999997 5666677778888999999998889999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCC--C
Q 004992 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--D 346 (720)
Q Consensus 269 a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~ 346 (720)
+..++.+++..+++....+...|+++.++..+.+++.-++..++.++..++. .+.....+.+.|+++.|..++.+. +
T Consensus 180 v~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 180 VYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEED 258 (503)
T ss_pred HHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccC
Confidence 9999999999999998999999999999999999888899999999999997 667778889999999999999652 2
Q ss_pred H---H-HHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHH-Hhhcccc
Q 004992 347 V---Q-LREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF-IRVGGVQ 421 (720)
Q Consensus 347 ~---~-v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l-~~~~~v~ 421 (720)
+ . ..-..+...++++. .......-.-..++..+.+++.+.++..+..|..+++.++...++...+ ...+.
T Consensus 259 p~~~~~~l~g~~~f~g~la~---~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~-- 333 (503)
T PF10508_consen 259 PRLSSLLLPGRMKFFGNLAR---VSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGP-- 333 (503)
T ss_pred CcccchhhhhHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcch--
Confidence 2 1 12223356667776 2111111111234556667778899999999999999999887776655 22210
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCccc----------chh--hh
Q 004992 422 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ----------RTI--FI 489 (720)
Q Consensus 422 ~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------~~~--~~ 489 (720)
.-..++..+-....++..++|..+..+|.++...... ... ..
T Consensus 334 --------------------------~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 334 --------------------------AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESL 387 (503)
T ss_pred --------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Confidence 0112445555566677888999999999999332211 111 12
Q ss_pred ccCcHH-HHHHhhcCCCchhhhhHHHHHHHHHhhcccccccC
Q 004992 490 DGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVD 530 (720)
Q Consensus 490 ~~~~~~-~L~~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~ 530 (720)
..+... .+..+++.+-|++|..+...+..|+.+.|+...+.
T Consensus 388 ~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~ 429 (503)
T PF10508_consen 388 SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREIC 429 (503)
T ss_pred cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 223344 67788888889999999999999999998776443
No 30
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.68 E-value=2.3e-15 Score=162.33 Aligned_cols=430 Identities=18% Similarity=0.131 Sum_probs=332.1
Q ss_pred ccchhcccchhhhccchhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc
Q 004992 13 ERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK 92 (720)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~ 92 (720)
-|+.++..+.+.+ +|++||+|+++++..+............+.+.+.+..|..+ ++|. +++.|...+.++..
T Consensus 234 vk~elr~~~~~lc---~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~D----dqds-Vr~~a~~~~~~l~~ 305 (759)
T KOG0211|consen 234 VKRELRPIVQSLC---QDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRD----DQDS-VREAAVESLVSLLD 305 (759)
T ss_pred HHHHHHHHHHhhc---cccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhc----chhh-HHHHHHHHHHHHHH
Confidence 4788888888888 99999999999998888887777777777777777777666 4555 99999999888876
Q ss_pred C--hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccC
Q 004992 93 N--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHM 170 (720)
Q Consensus 93 ~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~ 170 (720)
. .+. ... ....+.++...++.++ .++.........+. ............++....++++..
T Consensus 306 l~~~~~--d~~-~~~~~~l~~~~~d~~~------------~v~~~~~~~~~~L~--~~~~~~~~~~~~~~~~~~l~~~~~ 368 (759)
T KOG0211|consen 306 LLDDDD--DVV-KSLTESLVQAVEDGSW------------RVSYMVADKFSELS--SAVGPSATRTQLVPPVSNLLKDEE 368 (759)
T ss_pred hcCCch--hhh-hhhhHHHHHHhcChhH------------HHHHHHhhhhhhHH--HHhccccCcccchhhHHHHhcchh
Confidence 2 111 122 2367889999999888 89999998888888 222222233445778888888776
Q ss_pred CCccchhhhHHHHHHHHHHHHhhh-cCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCC
Q 004992 171 DSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249 (720)
Q Consensus 171 ~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g 249 (720)
. +.+..++.-...++. .+......+.....+|.+..++.+.+..++.+.+.....+.- ...+...+. -
T Consensus 369 ~--------e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p--~~~k~~ti~-~ 437 (759)
T KOG0211|consen 369 W--------EVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSP--ILPKERTIS-E 437 (759)
T ss_pred h--------hhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCc--cCCcCcCcc-c
Confidence 6 666666666666663 232333445556678999999999999999988888877763 223333333 3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHH
Q 004992 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (720)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 329 (720)
..|.++..+++..+.|+....+.+..+-..++...........++.+..+..+..|+++.+..+.+..++. +....+
T Consensus 438 llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~---q~~~~~ 514 (759)
T KOG0211|consen 438 LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL---QLGVEF 514 (759)
T ss_pred cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH---hhhhHH
Confidence 78899999999999999999988888877777777888888899999999998899999999999999985 344566
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCC
Q 004992 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 409 (720)
Q Consensus 330 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 409 (720)
+.....+.+..++.+....++++|+..+..++.. .+..|.....++.++....++++..|...+.++.-++..-.
T Consensus 515 ~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~-----~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g 589 (759)
T KOG0211|consen 515 FDEKLAELLRTWLPDHVYSIREAAARNLPALVET-----FGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG 589 (759)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHH-----hCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence 7777888899999999999999999999999983 23556666778888888887789999999988886653222
Q ss_pred chhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhh
Q 004992 410 NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 489 (720)
Q Consensus 410 ~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 489 (720)
. ..+...+++.+..+..++.++||.++++.|..+...-+.. ..
T Consensus 590 ~-----------------------------------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~--~~ 632 (759)
T KOG0211|consen 590 Q-----------------------------------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES--VR 632 (759)
T ss_pred c-----------------------------------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH--HH
Confidence 1 4456678899999999999999999999999987665433 23
Q ss_pred ccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 490 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 490 ~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+..+.|.+..+.++++.++|.+|..+...+....
T Consensus 633 ~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 633 DEEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 5566788888999999999999998888777543
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.61 E-value=5.5e-13 Score=129.12 Aligned_cols=350 Identities=17% Similarity=0.151 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (720)
.++.-...+++..+.++--|..+....+...++++|..-...+ +.++...++++|.|+|..+.++|..+.+.||-.
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~----d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSP----DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCC----cccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 5666777788888866666666555444445555554322221 119999999999999999999999999999988
Q ss_pred HHHHhhcC-------CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCC-
Q 004992 211 PLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSS- 280 (720)
Q Consensus 211 ~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~v~~~a~~~L~nL~~~~- 280 (720)
.++..|+. .+.+....++..|.|..-++++.+..+++.|+++.|...+.= .+....+..+....|+.+-.
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 88888753 135777888999999998899999999999999999887754 34455555555555554221
Q ss_pred cchHHHHHHcCChHHHHHhhccC-ChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHH-------HHH
Q 004992 281 PNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQ-------LRE 351 (720)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~-------v~~ 351 (720)
+.......+..+.-.+++++... .+++++-+..++...+. ++..+..+.+.|.+..++.+++. .+.. .-.
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k 291 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK 291 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence 22233344566667777777654 56777778888888874 56777788899999999999865 2222 223
Q ss_pred HHHHHHHHHhhhhcCcchhhhhhhcC-CHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhh
Q 004992 352 MSAFALGRLAQVITDMHNQAGIAHNG-GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV 430 (720)
Q Consensus 352 ~a~~~L~~l~~~~~~~~~~~~l~~~~-~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~ 430 (720)
.++....-+.. +++.-..+...+ +++.+..++.+.+...+..+.-+|+|+++...++..+++.+
T Consensus 292 ~~~el~vlllt---GDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~------------ 356 (604)
T KOG4500|consen 292 RIAELDVLLLT---GDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKD------------ 356 (604)
T ss_pred hhhhHhhhhhc---CchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHH------------
Confidence 33444444444 455545555555 88899999999999999999999999999988877777755
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHh-----cchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCC
Q 004992 431 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN 505 (720)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~ 505 (720)
++..|++++.. ++.+++.+++.+|.|+.....++..+...|..+.+...+....
T Consensus 357 ---------------------~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ 415 (604)
T KOG4500|consen 357 ---------------------FLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLAS 415 (604)
T ss_pred ---------------------HHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcC
Confidence 56666766643 4678889999999999999998888999999999999999999
Q ss_pred chhhhhHHHHHHHHHh
Q 004992 506 PKQQLDGAVALFKLAN 521 (720)
Q Consensus 506 ~~v~~~a~~aL~~L~~ 521 (720)
|++++.-...+..+..
T Consensus 416 ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 416 PPVTFKLLGTLRMIRD 431 (604)
T ss_pred CcchHHHHHHHHHHHh
Confidence 9999888877776654
No 32
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.60 E-value=3.1e-15 Score=121.63 Aligned_cols=90 Identities=37% Similarity=0.692 Sum_probs=85.7
Q ss_pred eEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhHHHHHHHHhhh
Q 004992 554 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQY 633 (720)
Q Consensus 554 Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~ 633 (720)
|+++.++++.+++||.+|+++|+||+.+|.+++.+.....+.+++.++++|+.+++|+|++.+.++..++.+++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998888778899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHH
Q 004992 634 LLEGLKRLCE 643 (720)
Q Consensus 634 ~~~~l~~~c~ 643 (720)
+++.|.+.|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 33
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.3e-12 Score=128.20 Aligned_cols=362 Identities=18% Similarity=0.183 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHH
Q 004992 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (720)
Q Consensus 55 ~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~ 134 (720)
....-..+|.+|++.+..+ +.+.....+..|..++--.+++..+.+.|+++.|+.++....+ +++.
T Consensus 298 lKMrrkniV~mLVKaLdr~--n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~------------dL~~ 363 (791)
T KOG1222|consen 298 LKMRRKNIVAMLVKALDRS--NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP------------DLRK 363 (791)
T ss_pred HHHHHHhHHHHHHHHHccc--chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH------------HHHH
Confidence 3333445666666666544 3446777777888888777888999999999999999988777 9999
Q ss_pred HHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHH
Q 004992 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (720)
Q Consensus 135 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (720)
..+..+.|++.+...|..++..|.+|.+..+|.+.... ..|+..|+.++- ++..+..+.....++.+..
T Consensus 364 ~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~----------~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk 432 (791)
T KOG1222|consen 364 ATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH----------GIALNMLYHLSC-DDDAKAMFAYTDCIKLLMK 432 (791)
T ss_pred HHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc----------hhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999999876442 457777777776 6667777888889998887
Q ss_pred hh-cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCC
Q 004992 215 LL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (720)
Q Consensus 215 ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~l-l~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~ 292 (720)
.+ ...+.++-...+....|++. +..+.+.+.+..++..|+.. ++..++-+ ...+.|++.+....+..+++ .
T Consensus 433 ~v~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--y 505 (791)
T KOG1222|consen 433 DVLSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--Y 505 (791)
T ss_pred HHHhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--H
Confidence 55 44556666666666678886 67777778887788888865 45555433 56788998775555555543 4
Q ss_pred hHHHHHhhccC-ChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHHHhhhhcCcch
Q 004992 293 LQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVITDMHN 369 (720)
Q Consensus 293 l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (720)
+..|...+..+ +.....+++.+++|+.-.+-+....+...+++|++-..|.. ...+++-..+-+++.++. +..+
T Consensus 506 vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~---d~~c 582 (791)
T KOG1222|consen 506 VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR---DLDC 582 (791)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh---hhHH
Confidence 55566666544 46678889999999987666777777788999999999876 345677778888888888 7777
Q ss_pred hhhhhhcCCHHHHHHHhcC--CChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHh
Q 004992 370 QAGIAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 447 (720)
Q Consensus 370 ~~~l~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~ 447 (720)
...+..++.++.++++++. .+.++..+..++...+..++..+..++..-.
T Consensus 583 A~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~---------------------------- 634 (791)
T KOG1222|consen 583 ARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETA---------------------------- 634 (791)
T ss_pred HHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------------------
Confidence 7888899999999999964 3667777778887777766555444444221
Q ss_pred hhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc
Q 004992 448 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 483 (720)
Q Consensus 448 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 483 (720)
.-..+++++++.+.++|..+-.+|--++.+.+
T Consensus 635 ----~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 635 ----LGAYLIDLMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred ----chHHHHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence 23468899999999999999999888876654
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.57 E-value=9.2e-13 Score=151.60 Aligned_cols=276 Identities=22% Similarity=0.190 Sum_probs=186.2
Q ss_pred CCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 103 ~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
.+.++.|+..|++++. .||..|+..|+.+.. .+.++.|+..|++++. .|+
T Consensus 620 ~~~~~~L~~~L~D~d~------------~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~--------~VR 669 (897)
T PRK13800 620 APSVAELAPYLADPDP------------GVRRTAVAVLTETTP----------PGFGPALVAALGDGAA--------AVR 669 (897)
T ss_pred chhHHHHHHHhcCCCH------------HHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCH--------HHH
Confidence 3455666777766655 777777777776651 2246677777766655 777
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCC
Q 004992 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (720)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~ 262 (720)
..|+..|..+....+ ..+.+...|.++++.+|..++.+|..+.. +-...++..|.+++
T Consensus 670 ~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d 727 (897)
T PRK13800 670 RAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDPD 727 (897)
T ss_pred HHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCC
Confidence 777777766642111 12456666777777777777777776542 11334566777777
Q ss_pred HHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHh
Q 004992 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (720)
Q Consensus 263 ~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 342 (720)
+.||..|+.+|..+. . .+.|...+.+.++.+|..++.+|..+.... ...++.|..++
T Consensus 728 ~~VR~~Av~aL~~~~---~-----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll 784 (897)
T PRK13800 728 HRVRIEAVRALVSVD---D-----------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALT 784 (897)
T ss_pred HHHHHHHHHHHhccc---C-----------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHh
Confidence 777777777777651 1 123556677777777777777777774311 11256677777
Q ss_pred cCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhccccc
Q 004992 343 QSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 422 (720)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~ 422 (720)
+++++.+|..|+.+|..+.. . ......+...+.++++.||..|+.+|..+..
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~---~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------------- 836 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGC---P---------PDDVAAATAALRASAWQVRQGAARALAGAAA---------------- 836 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCC---c---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------------
Confidence 77777777777777776654 1 1123456667777777777777777776542
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhc
Q 004992 423 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG 502 (720)
Q Consensus 423 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~ 502 (720)
...++.|+.+++++++.||..|+.+|..+.. .....+.|..+++
T Consensus 837 ---------------------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~---------~~~a~~~L~~al~ 880 (897)
T PRK13800 837 ---------------------------DVAVPALVEALTDPHLDVRKAAVLALTRWPG---------DPAARDALTTALT 880 (897)
T ss_pred ---------------------------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC---------CHHHHHHHHHHHh
Confidence 1245778999999999999999999999721 1234778889999
Q ss_pred CCCchhhhhHHHHHH
Q 004992 503 STNPKQQLDGAVALF 517 (720)
Q Consensus 503 ~~~~~v~~~a~~aL~ 517 (720)
+++++||..|..+|.
T Consensus 881 D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 881 DSDADVRAYARRALA 895 (897)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999885
No 35
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=4.3e-12 Score=124.54 Aligned_cols=403 Identities=15% Similarity=0.140 Sum_probs=296.5
Q ss_pred HHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHH
Q 004992 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (720)
Q Consensus 52 ~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~ 131 (720)
.+.....+.++...+...+..+ . .....|+..|.|++.+-.....++...++..|+..|...+. +
T Consensus 255 netLk~e~dr~~kklk~~~~KQ--e-qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~------------~ 319 (791)
T KOG1222|consen 255 NETLKEEIDRLNKKLKTAIRKQ--E-QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNS------------S 319 (791)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccch------------H
Confidence 3444555666666665554332 2 25667888999999987666788888899999999998877 8
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHH
Q 004992 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (720)
Q Consensus 132 v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (720)
+.......|..|+--.+++..+.+.|.+..|+++.....+ +++...+..|.|++. +...+..++..|.+|.
T Consensus 320 Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~--------dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~ 390 (791)
T KOG1222|consen 320 LLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP--------DLRKATLMLLFNLSF-DSGLRPKMVNGGLLPH 390 (791)
T ss_pred HHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH--------HHHHHHHHHhhhccc-cccccHHHhhccchHH
Confidence 8888999999999666788888999999999999987777 999999999999998 6667888999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcchHHHHHHc
Q 004992 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (720)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~-~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~ 290 (720)
+..++.+... ..-|+..++.++. ++..+..+..+.+++.+++.+- ..+.+|-...+....||+.. ..+.+.+.+.
T Consensus 391 l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceG 466 (791)
T KOG1222|consen 391 LASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEG 466 (791)
T ss_pred HHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecC
Confidence 9999987543 2347788999997 7888888988889999997654 45666766667777888754 4455667777
Q ss_pred CChHHHHHhhc-cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCcc
Q 004992 291 GALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITDMH 368 (720)
Q Consensus 291 ~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~ 368 (720)
.++..|+...- ..++- ....+.|++......+..+++ .+.-|...++. .+......++++++||.. .+-+
T Consensus 467 qgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v--~dld 538 (791)
T KOG1222|consen 467 QGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKV--TDLD 538 (791)
T ss_pred cchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhccc--CCCC
Confidence 78888887654 33332 245677887665544444543 34555666654 566777888888888887 3344
Q ss_pred hhhhhhhcCCHHHHHHHhcCC--ChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHH
Q 004992 369 NQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 446 (720)
Q Consensus 369 ~~~~l~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~ 446 (720)
....+-+...+|-+-..+... ..+++....-+++.++....+..-+..++
T Consensus 539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~---------------------------- 590 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAK---------------------------- 590 (791)
T ss_pred HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccc----------------------------
Confidence 455566678888888877543 44566667777777777666555444444
Q ss_pred hhhhhhHHHHHHHHHhc--chhHHHHHHHHHHhhcCCcccchhhhccC-cHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 447 KIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGG-GLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 447 ~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+++.++++++.. +.+...+...+...+..+...+..+.... .-.-|+.++.+.+.++|..+--+|--++.+.
T Consensus 591 -----~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 591 -----LIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred -----cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 566677777654 55666677777777777765566555544 4457889999999999999999998888765
No 36
>PRK09687 putative lyase; Provisional
Probab=99.54 E-value=7e-13 Score=129.98 Aligned_cols=255 Identities=18% Similarity=0.158 Sum_probs=199.9
Q ss_pred CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004992 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (720)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (720)
-.++.|..+|.+.+. .++..+++.|..+-. ...++.+..++.++++.+|..++++|+.+..
T Consensus 23 ~~~~~L~~~L~d~d~--------~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 23 LNDDELFRLLDDHNS--------LKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred ccHHHHHHHHhCCCH--------HHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 357889999988777 899999999886642 2345778888999999999999999999974
Q ss_pred CChhcHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHH
Q 004992 237 KNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (720)
Q Consensus 237 ~~~~~~~~i~~~g~l~~L~~l-l~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 315 (720)
.... ....++.|..+ ++++++.||..++.+|+++....... ....+..+...+.+.++.+|..++++|
T Consensus 84 -~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aL 152 (280)
T PRK09687 84 -AKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFAL 152 (280)
T ss_pred -Cccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 1111 22367888876 67889999999999999996432211 112455677778888999999999999
Q ss_pred HHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHH
Q 004992 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 395 (720)
Q Consensus 316 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~ 395 (720)
+.+.. ...++.|+.++.++++.+|..|+.+|+.+.. . ...+++.|+.++.+.++.||.
T Consensus 153 g~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~---~--------~~~~~~~L~~~L~D~~~~VR~ 210 (280)
T PRK09687 153 SVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKY---D--------NPDIREAFVAMLQDKNEEIRI 210 (280)
T ss_pred hccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC---C--------CHHHHHHHHHHhcCCChHHHH
Confidence 87631 2367999999999999999999999998843 1 124678899999999999999
Q ss_pred HHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHH
Q 004992 396 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 475 (720)
Q Consensus 396 ~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 475 (720)
.|.++|..+-. + ..++.|+..+.+++ ++..++.+|
T Consensus 211 ~A~~aLg~~~~-~------------------------------------------~av~~Li~~L~~~~--~~~~a~~AL 245 (280)
T PRK09687 211 EAIIGLALRKD-K------------------------------------------RVLSVLIKELKKGT--VGDLIIEAA 245 (280)
T ss_pred HHHHHHHccCC-h------------------------------------------hHHHHHHHHHcCCc--hHHHHHHHH
Confidence 99999998642 1 25778888888766 678899999
Q ss_pred HhhcCCcccchhhhccCcHHHHHHhhc-CCCchhhhhHHHHHHH
Q 004992 476 AHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFK 518 (720)
Q Consensus 476 ~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~ 518 (720)
+++... ..+|.|..++. ++|+.++..|.+++..
T Consensus 246 g~ig~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 246 GELGDK----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HhcCCH----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 988543 46899999997 7899999999988753
No 37
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.3e-12 Score=142.24 Aligned_cols=434 Identities=16% Similarity=0.176 Sum_probs=276.4
Q ss_pred cchhcccchhhhccchhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC
Q 004992 14 RKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN 93 (720)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~ 93 (720)
|..+|..+-+.. +.+..+-+|+.++...+......-.. .-|.++++|.++.++. ++..|+.|+.+|.++...
T Consensus 77 ~~siks~lL~~~--~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~ 148 (1075)
T KOG2171|consen 77 QQSIKSSLLEII--QSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSP--NPSLRESALLILSSLPET 148 (1075)
T ss_pred HHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhh
Confidence 444444444433 13344556666655433322222111 5667778888877665 555799999999998773
Q ss_pred --hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cC---hhhHHHHHHcCChHHHHHHHh
Q 004992 94 --EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VK---PEHQQLIVDNGALSHLVNLLK 167 (720)
Q Consensus 94 --~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~---~~~~~~~~~~~~l~~L~~lL~ 167 (720)
......+. ...+.+.+-+.+++. .||..++++++.++ .. +...+.+. ..+|.++..+.
T Consensus 149 ~~~~~~~~~~--~l~~lf~q~~~d~s~------------~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~ 212 (1075)
T KOG2171|consen 149 FGNTLQPHLD--DLLRLFSQTMTDPSS------------PVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQ 212 (1075)
T ss_pred hccccchhHH--HHHHHHHHhccCCcc------------hHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhH
Confidence 22111111 133444455555555 59999999999998 33 22333332 35676666665
Q ss_pred ccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCC--CHHHHHHHHHHHHHhccCChhcHHHH
Q 004992 168 RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQI 245 (720)
Q Consensus 168 ~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~i 245 (720)
..-+.... .....++.+|..++...+..-.... ..++...+.+.++. ++.+|..|+.+|..++...+...+..
T Consensus 213 ~~i~~~d~----~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~ 287 (1075)
T KOG2171|consen 213 EVIQDGDD----DAAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKL 287 (1075)
T ss_pred hhhhccch----HHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhc
Confidence 43222111 4556788888888875554322221 23455555555554 58999999999999997544333332
Q ss_pred Hh--CCCHHHHHHhhcCCC----------------HHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHH
Q 004992 246 VE--CNALPTLILMLRSED----------------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES 307 (720)
Q Consensus 246 ~~--~g~l~~L~~ll~~~~----------------~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 307 (720)
.. ..+++.++..+.+.. ..-...|..+|..++.+-+. ..+-.-+++.+-.++++.+|.-
T Consensus 288 ~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g---~~v~p~~~~~l~~~l~S~~w~~ 364 (1075)
T KOG2171|consen 288 ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG---KQVLPPLFEALEAMLQSTEWKE 364 (1075)
T ss_pred hhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh---hhehHHHHHHHHHHhcCCCHHH
Confidence 22 235666666664311 12355677777777754332 2223446677888889999999
Q ss_pred HHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc
Q 004992 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD 387 (720)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~ 387 (720)
|++++.+|+.++.++.+.....+ ..+++.++..|.++++.||.+|+.+++.++... ...-..-.....++.|+..+.
T Consensus 365 R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl--~p~iqk~~~e~l~~aL~~~ld 441 (1075)
T KOG2171|consen 365 RHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL--QPEIQKKHHERLPPALIALLD 441 (1075)
T ss_pred HHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh--cHHHHHHHHHhccHHHHHHhc
Confidence 99999999999988777666533 357888899999999999999999999999821 122233344556777888885
Q ss_pred C-CChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHH-HHHHHHHhcch
Q 004992 388 S-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN-HLLYLMRVAEK 465 (720)
Q Consensus 388 ~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~L~~ll~~~~~ 465 (720)
+ .++.++..|+.++.|++..... .++. + .-.+++. .+..+..++.+
T Consensus 442 ~~~~~rV~ahAa~al~nf~E~~~~--~~l~----p--------------------------YLd~lm~~~l~~L~~~~~~ 489 (1075)
T KOG2171|consen 442 STQNVRVQAHAAAALVNFSEECDK--SILE----P--------------------------YLDGLMEKKLLLLLQSSKP 489 (1075)
T ss_pred ccCchHHHHHHHHHHHHHHHhCcH--HHHH----H--------------------------HHHHHHHHHHHHHhcCCch
Confidence 5 5789999999999999864322 1111 0 1123455 45556677899
Q ss_pred hHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCC-chhhhhHHH
Q 004992 466 GVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN-PKQQLDGAV 514 (720)
Q Consensus 466 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~ 514 (720)
.+|+.++.+|+..+........-+-.-.+|.|...+...+ .+.|.-..+
T Consensus 490 ~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~Lrgk 539 (1075)
T KOG2171|consen 490 YVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGK 539 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhh
Confidence 9999999999999887776666666677899999888754 444443333
No 38
>PRK09687 putative lyase; Provisional
Probab=99.51 E-value=1.9e-12 Score=126.86 Aligned_cols=254 Identities=17% Similarity=0.094 Sum_probs=194.7
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHH
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~ 137 (720)
.++.+++.|.+. |..+|..+++.|..+.. ..+++.+..++++.+. .+|..++
T Consensus 24 ~~~~L~~~L~d~------d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~------------~vR~~A~ 75 (280)
T PRK09687 24 NDDELFRLLDDH------NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNP------------IERDIGA 75 (280)
T ss_pred cHHHHHHHHhCC------CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCH------------HHHHHHH
Confidence 355666666544 77799999999986542 2356777888888777 9999999
Q ss_pred HHHHHhccChhhHHHHHHcCChHHHHHHH-hccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh
Q 004992 138 FALGLLAVKPEHQQLIVDNGALSHLVNLL-KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (720)
Q Consensus 138 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 216 (720)
++|+.|...+... ...++.|..++ ++.+. .|+..|+.+|.+++...... ....+..+...+
T Consensus 76 ~aLg~lg~~~~~~-----~~a~~~L~~l~~~D~d~--------~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~ 137 (280)
T PRK09687 76 DILSQLGMAKRCQ-----DNVFNILNNLALEDKSA--------CVRASAINATGHRCKKNPLY-----SPKIVEQSQITA 137 (280)
T ss_pred HHHHhcCCCccch-----HHHHHHHHHHHhcCCCH--------HHHHHHHHHHhccccccccc-----chHHHHHHHHHh
Confidence 9999998432211 12467777774 44444 99999999999997533211 112345677778
Q ss_pred cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHH
Q 004992 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (720)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L 296 (720)
.++++.||..++.+|+.+.. ...++.|+.++.++++.||..|+.+|+++...++ ..++.|
T Consensus 138 ~D~~~~VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L 197 (280)
T PRK09687 138 FDKSTNVRFAVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAF 197 (280)
T ss_pred hCCCHHHHHHHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHH
Confidence 89999999999999987762 3379999999999999999999999999943323 256779
Q ss_pred HHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhc
Q 004992 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHN 376 (720)
Q Consensus 297 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~ 376 (720)
+..+.+.++.+|..|+++|+.+-. ...+|.|+..+.+++ ++..++.+|+.+.. .
T Consensus 198 ~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-------------~ 251 (280)
T PRK09687 198 VAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-------------K 251 (280)
T ss_pred HHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-------------H
Confidence 999999999999999999998632 146899999999866 67788888888776 2
Q ss_pred CCHHHHHHHhc-CCChhHHHHHHHHHHh
Q 004992 377 GGLVPLLKLLD-SKNGSLQHNAAFALYG 403 (720)
Q Consensus 377 ~~i~~l~~ll~-~~~~~v~~~a~~~L~~ 403 (720)
.+++.|.++++ +++..++..+.++|..
T Consensus 252 ~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 47899999995 7899999999998864
No 39
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.50 E-value=5.5e-12 Score=129.18 Aligned_cols=395 Identities=16% Similarity=0.131 Sum_probs=262.4
Q ss_pred hHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHH
Q 004992 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~ 153 (720)
|++....|+.-..|++- .++....+++.|+++.|+.++...+.. .+.+...+.++..++ ........+
T Consensus 22 dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s----------~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 22 DPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGS----------TELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred CHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCc----------hhhhhhHHHHHHhHHhhccchHHHH
Confidence 56667888888888877 466667899999999999999876652 277778888888888 778888889
Q ss_pred HHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCch-----------------------------------
Q 004992 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS----------------------------------- 198 (720)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~----------------------------------- 198 (720)
.+.+.++.++.+|.+++.. .++...+.++.++.+..+.
T Consensus 92 L~~~~ll~Ll~LLs~sD~~-------~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~ 164 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSL-------NVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRA 164 (678)
T ss_pred HHHhhHHHHHHHhcCcchH-------hHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 9999999999999888722 6777777777777653321
Q ss_pred --------hhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH---HhccCChhcHHHH----HhCCCHH--HHHHhhcCC
Q 004992 199 --------IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR---TLAFKNDENKNQI----VECNALP--TLILMLRSE 261 (720)
Q Consensus 199 --------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~---~L~~~~~~~~~~i----~~~g~l~--~L~~ll~~~ 261 (720)
.+......|+.+.+.-++...+..+|.+|+.+++ ++...++.....+ .+.|+.+ .+.++++++
T Consensus 165 a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~ 244 (678)
T KOG1293|consen 165 AHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP 244 (678)
T ss_pred ccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC
Confidence 1111222233333333333335677888888888 7777666554433 3456666 567788888
Q ss_pred CHHHHHHHHHHHHHhhcCCcc------------hH-HHHH--------HcC---------ChHHH----HHhhccC----
Q 004992 262 DSAIHYEAVGVIGNLVHSSPN------------IK-KEVL--------AAG---------ALQPV----IGLLSSC---- 303 (720)
Q Consensus 262 ~~~v~~~a~~~L~nL~~~~~~------------~~-~~~~--------~~~---------~l~~L----~~ll~~~---- 303 (720)
+...+-.++.++.++...+.. .. ..+. ..+ ++..+ .+-++..
T Consensus 245 ~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~ 324 (678)
T KOG1293|consen 245 DFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEE 324 (678)
T ss_pred CccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhh
Confidence 888888888888888755410 00 0000 001 11111 1111110
Q ss_pred -ChHHHHHHHHHHHHHhccCcchhhHHHhcCCh----------------------HHHHHHhcCCCHHHHHHHHHHHHHH
Q 004992 304 -CSESQREAALLLGQFAATDSDCKVHIVQRGAV----------------------RPLIEMLQSPDVQLREMSAFALGRL 360 (720)
Q Consensus 304 -~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~----------------------~~L~~ll~~~~~~v~~~a~~~L~~l 360 (720)
..+...+....-..+++..++.+........+ ..+.......+...+.+|+-++.++
T Consensus 325 ~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~ 404 (678)
T KOG1293|consen 325 ATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSF 404 (678)
T ss_pred hhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 00111122222333333333333322222111 1111112245778889999999998
Q ss_pred hhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc-CCCchhHHHhhcccccccchhhhhhhhHHHHHH
Q 004992 361 AQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK 439 (720)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~ 439 (720)
+.. -..-+..+....+.++++++++.++..|...++++|.|+.. ....+..+++.|
T Consensus 405 srs--V~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~n--------------------- 461 (678)
T KOG1293|consen 405 SRS--VSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNN--------------------- 461 (678)
T ss_pred HHH--HHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcC---------------------
Confidence 872 22334446677889999999999999999999999999965 455666677766
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCccc--chhhhccCcHHHHHHhhcCCCchhhhhHHHHHH
Q 004992 440 TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ--RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 517 (720)
Q Consensus 440 ~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~ 517 (720)
++..+..++.++++.+|..+.++|.++....+. +..+...-+...+..+.+++++.||+.+...|.
T Consensus 462 ------------gId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 462 ------------GIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR 529 (678)
T ss_pred ------------cHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 455678899999999999999999999887663 333444455678889999999999999999999
Q ss_pred HHHhh
Q 004992 518 KLANK 522 (720)
Q Consensus 518 ~L~~~ 522 (720)
||.-+
T Consensus 530 Nl~c~ 534 (678)
T KOG1293|consen 530 NLTCN 534 (678)
T ss_pred HhhcC
Confidence 99865
No 40
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=8.1e-10 Score=120.98 Aligned_cols=454 Identities=16% Similarity=0.100 Sum_probs=283.7
Q ss_pred chHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCc
Q 004992 49 SDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKP 127 (720)
Q Consensus 49 ~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~ 127 (720)
..........+|.++..+...+..++.| ....++.+|..++.. |......... ++..-+.+.++.+-
T Consensus 194 ~~~~~~~~~llP~~l~vl~~~i~~~d~~--~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l--------- 261 (1075)
T KOG2171|consen 194 KSEVDKFRDLLPSLLNVLQEVIQDGDDD--AAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKEL--------- 261 (1075)
T ss_pred hHHHHHHHHHhHHHHHHhHhhhhccchH--HHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccc---------
Confidence 4455667788999999999987766443 467888899998884 5554444432 67777777776654
Q ss_pred chHHHHHHHHHHHHHhc-cChhhHHHHH--HcCChHHHHHHHhccCCC--------ccchhhhHHHHHHHHHHHHhhhcC
Q 004992 128 FEHEVEKGSAFALGLLA-VKPEHQQLIV--DNGALSHLVNLLKRHMDS--------NCSRAVNSVIRRAADAITNLAHEN 196 (720)
Q Consensus 128 ~~~~v~~~a~~~L~~L~-~~~~~~~~~~--~~~~l~~L~~lL~~~~~~--------~~~~~~~~v~~~a~~~L~~l~~~~ 196 (720)
+..+|..|+..|..++ .-|...+... ....++.++.++.+..++ ........--..|..+|-.++.+-
T Consensus 262 -~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L 340 (1075)
T KOG2171|consen 262 -ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHL 340 (1075)
T ss_pred -cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcC
Confidence 3489999999999999 4344333322 233555666666543222 000000124466777887777644
Q ss_pred chhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 197 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (720)
Q Consensus 197 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL 276 (720)
+.. .+-.-..+.+-.++.++++.-|.+++.+|..++.|..+.-....+. +++..+..++|+++.||..|+.+++.+
T Consensus 341 ~g~---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~ 416 (1075)
T KOG2171|consen 341 GGK---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQM 416 (1075)
T ss_pred Chh---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 322 1223456777788899999999999999999998877766655544 899999999999999999999999999
Q ss_pred hcCCcchHHHHHHcCChHHHHHhhccC-ChHHHHHHHHHHHHHhccCcchhhHHHhcCChH-HHHHHhcCCCHHHHHHHH
Q 004992 277 VHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVR-PLIEMLQSPDVQLREMSA 354 (720)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~-~L~~ll~~~~~~v~~~a~ 354 (720)
+.+-....+.-....+++.|+..+.+. +++++.+|+.++.|++..++.....-.-.+++. .+..++.++.+.+++.++
T Consensus 417 stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 417 STDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred hhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 876555555556677888999988865 679999999999999875554433222234555 444455678899999999
Q ss_pred HHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCC----hhHHHHHHHHHHhccc--CCC----chhHHHhhccccccc
Q 004992 355 FALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKN----GSLQHNAAFALYGLAD--NED----NVADFIRVGGVQKLQ 424 (720)
Q Consensus 355 ~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~----~~v~~~a~~~L~~l~~--~~~----~~~~l~~~~~v~~L~ 424 (720)
.+|+..+... ......++ ...++.|.+.+...+ ..+|.++..++.-++. ..+ ....+++..+.-. .
T Consensus 497 taIasvA~AA-~~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~-~ 572 (1075)
T KOG2171|consen 497 TAIASVADAA-QEKFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQ-G 572 (1075)
T ss_pred HHHHHHHHHH-hhhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhc-c
Confidence 9999999832 11111211 235777888875543 3455555555555543 211 1112222111110 1
Q ss_pred chhhhhhhhHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHhc--------------------------c-------
Q 004992 425 DGEFIVQATKDCVAKTLKRLEEKIH-------GRVLNHLLYLMRVA--------------------------E------- 464 (720)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~L~~ll~~~--------------------------~------- 464 (720)
+....-.....+....-.++..... +.++++++.-.+-. +
T Consensus 573 ~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~ 652 (1075)
T KOG2171|consen 573 SDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIR 652 (1075)
T ss_pred cchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeee
Confidence 1111112223333333333333332 23444444332110 0
Q ss_pred ---hhHHHHHHHHHHhhcCCcccchhhhccCcHH-HHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 465 ---KGVQRRVALALAHLCSPDDQRTIFIDGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 465 ---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~-~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
-+-+..|+.+|..++.........+-..+++ .+..+.-.-+..||..|+.++-++....
T Consensus 653 Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~ 715 (1075)
T KOG2171|consen 653 TSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCA 715 (1075)
T ss_pred ehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 0124567888888877666444444445555 3334444577779999999999998754
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.49 E-value=1.1e-11 Score=142.81 Aligned_cols=264 Identities=20% Similarity=0.157 Sum_probs=207.5
Q ss_pred HhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 75 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
+|+.+|..|+..|..+. ..++++.|..+|++++. .||..|+.+|..+....
T Consensus 633 ~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~------------~VR~~Aa~aL~~l~~~~------- 683 (897)
T PRK13800 633 PDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAA------------AVRRAAAEGLRELVEVL------- 683 (897)
T ss_pred CCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHhcc-------
Confidence 47889999999999754 23467889999988877 99999999998886211
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (720)
...+.+...|.+.+. .++..++..|..+... -...++..|.++++.+|..|+.+|..+
T Consensus 684 --~~~~~L~~~L~~~d~--------~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 684 --PPAPALRDHLGSPDP--------VVRAAALDVLRALRAG------------DAALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred --CchHHHHHHhcCCCH--------HHHHHHHHHHHhhccC------------CHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 113567777876544 8999999988876421 124567889999999999999999976
Q ss_pred ccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHH
Q 004992 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (720)
Q Consensus 235 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (720)
.. .+.|..++.++++.||..++.+|..+..... ..++.|..++++.++.+|..++.+
T Consensus 742 ~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~a 798 (897)
T PRK13800 742 DD--------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAA 798 (897)
T ss_pred cC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHH
Confidence 31 2456788999999999999999999953211 236788899999999999999999
Q ss_pred HHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHH
Q 004992 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 394 (720)
Q Consensus 315 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~ 394 (720)
|.++.. +. ...+.++..|.++++.+|..|+.+|..+.. ...++.|..++.++++.||
T Consensus 799 Lg~~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~D~~~~VR 855 (897)
T PRK13800 799 LAELGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAAA-------------DVAVPALVEALTDPHLDVR 855 (897)
T ss_pred HHhcCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-------------cchHHHHHHHhcCCCHHHH
Confidence 998843 11 123668889999999999999999987654 3456899999999999999
Q ss_pred HHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHH
Q 004992 395 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 474 (720)
Q Consensus 395 ~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 474 (720)
..|+.+|..+...+. ..+.|...++++++.||..|..+
T Consensus 856 ~~A~~aL~~~~~~~~------------------------------------------a~~~L~~al~D~d~~Vr~~A~~a 893 (897)
T PRK13800 856 KAAVLALTRWPGDPA------------------------------------------ARDALTTALTDSDADVRAYARRA 893 (897)
T ss_pred HHHHHHHhccCCCHH------------------------------------------HHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999732221 34567788999999999999999
Q ss_pred HHh
Q 004992 475 LAH 477 (720)
Q Consensus 475 L~~ 477 (720)
|..
T Consensus 894 L~~ 896 (897)
T PRK13800 894 LAH 896 (897)
T ss_pred Hhh
Confidence 863
No 42
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.48 E-value=6.9e-12 Score=119.85 Aligned_cols=192 Identities=19% Similarity=0.191 Sum_probs=161.1
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHH
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~ 137 (720)
.+..++..|... .|+.++..++.++++.+..+.++..+.+.|+++.+..++.+++. .++..|+
T Consensus 13 ~l~~Ll~lL~~t-----~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~------------~vr~~AL 75 (254)
T PF04826_consen 13 ELQKLLCLLEST-----EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP------------SVREKAL 75 (254)
T ss_pred HHHHHHHHHhcC-----CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh------------HHHHHHH
Confidence 356666666664 68889999999999999999999999999999999999999888 9999999
Q ss_pred HHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc
Q 004992 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (720)
Q Consensus 138 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (720)
++|.|++.+.+++..+.. .++.+++.+.....++ +++..+++.|.+++..+ ..+..+. +.++.++.+|.
T Consensus 76 ~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns------~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~ 144 (254)
T PF04826_consen 76 NALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNS------EVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLS 144 (254)
T ss_pred HHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCC------HHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHH
Confidence 999999977777776643 4777777665543222 89999999999998743 3444443 57999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 004992 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~nL~~ 278 (720)
.++..++..++++|.||+. ++...+.+...++++.++.++..+ +.++...++..+.|+..
T Consensus 145 ~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 145 SGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred cCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9999999999999999997 888888888888999999999886 67889999999999963
No 43
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.46 E-value=6e-12 Score=120.25 Aligned_cols=194 Identities=23% Similarity=0.329 Sum_probs=162.0
Q ss_pred HhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhH
Q 004992 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (720)
Q Consensus 101 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~ 180 (720)
.+.+-++.|+.+|+.... |.+++.+..++++.+..+..++.+.+.|+++.+.++|.++++ .
T Consensus 9 l~~~~l~~Ll~lL~~t~d-----------p~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~--------~ 69 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTED-----------PFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP--------S 69 (254)
T ss_pred cCHHHHHHHHHHHhcCCC-----------hHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh--------H
Confidence 456678899999986543 389999999999999999999999999999999999999877 9
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC--CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhh
Q 004992 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (720)
Q Consensus 181 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll 258 (720)
++..|+++|.|++. +.+++..+. ..++.+++...+ -+..++..++++|.+|+. .++.+..+.. .++.++.++
T Consensus 70 vr~~AL~aL~Nls~-~~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~--~i~~ll~LL 143 (254)
T PF04826_consen 70 VREKALNALNNLSV-NDENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLAN--YIPDLLSLL 143 (254)
T ss_pred HHHHHHHHHHhcCC-ChhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHh--hHHHHHHHH
Confidence 99999999999998 455555443 356666664433 368899999999999996 4555555544 699999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC-ChHHHHHHHHHHHHHhc
Q 004992 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAA 320 (720)
Q Consensus 259 ~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~ 320 (720)
..++..++..++++|.||+. ++...+.++.++++..++.+++.+ +.++...++....|+..
T Consensus 144 ~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 144 SSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999975 477788899999999999999876 57788899999999963
No 44
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.3e-11 Score=124.18 Aligned_cols=352 Identities=19% Similarity=0.149 Sum_probs=231.5
Q ss_pred CChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHH-HHH---cCChHHHHHHHhccCCCccchhh
Q 004992 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL-IVD---NGALSHLVNLLKRHMDSNCSRAV 178 (720)
Q Consensus 104 g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~-~~~---~~~l~~L~~lL~~~~~~~~~~~~ 178 (720)
.++|.|.++|.+++. ...+.|..+|.++| ++++.-+. +.+ .-.+|.++.+.+++++
T Consensus 128 elLp~L~~~L~s~d~------------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp------- 188 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDY------------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP------- 188 (885)
T ss_pred hHHHHHHHHhcCCcc------------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh-------
Confidence 368899999999887 56789999999999 55443222 111 1368889999998877
Q ss_pred hHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhh
Q 004992 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (720)
Q Consensus 179 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll 258 (720)
.+|..|+.|+..+....... -......++..+..+-.+++++||...|.++..|....++.. .-.-.+++..++...
T Consensus 189 -kiRs~A~~cvNq~i~~~~qa-l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl-~phl~~IveyML~~t 265 (885)
T KOG2023|consen 189 -KIRSHAVGCVNQFIIIQTQA-LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL-VPHLDNIVEYMLQRT 265 (885)
T ss_pred -hHHHHHHhhhhheeecCcHH-HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc-ccchHHHHHHHHHHc
Confidence 99999999998877533321 122233567888888899999999999999999996333221 111245788888888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcchHHHHHH---cCChHHHHHhhccC--------------------------------
Q 004992 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA---AGALQPVIGLLSSC-------------------------------- 303 (720)
Q Consensus 259 ~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~---~~~l~~L~~ll~~~-------------------------------- 303 (720)
++.+.+|...|+.....++.. + .+..+.. ..++|.|++-+..+
T Consensus 266 qd~dE~VALEACEFwla~aeq-p-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~ 343 (885)
T KOG2023|consen 266 QDVDENVALEACEFWLALAEQ-P-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKE 343 (885)
T ss_pred cCcchhHHHHHHHHHHHHhcC-c-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchh
Confidence 999999999999999999865 3 3344433 34556555433210
Q ss_pred ------------------------ChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 004992 304 ------------------------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (720)
Q Consensus 304 ------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 359 (720)
+|.+|+..+.+|.-++. ..+..+.. .++|.|-+.|.+.+..+|++++-+|+.
T Consensus 344 ~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan---vf~~elL~-~l~PlLk~~L~~~~W~vrEagvLAlGA 419 (885)
T KOG2023|consen 344 HGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN---VFGDELLP-ILLPLLKEHLSSEEWKVREAGVLALGA 419 (885)
T ss_pred ccCccccccccccccccccccccccccHhhccHHHHHHHHH---hhHHHHHH-HHHHHHHHHcCcchhhhhhhhHHHHHH
Confidence 15567777776666654 12222221 245566666677899999999999999
Q ss_pred HhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCC--CchhHHHhhcccccccchhhhhhhhHHHH
Q 004992 360 LAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE--DNVADFIRVGGVQKLQDGEFIVQATKDCV 437 (720)
Q Consensus 360 l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~l~~~~~v~~L~~~~~~~~~~~~~~ 437 (720)
+++ |..+.-.. .-...++.++.+|.++.+.||.-+||+|...+..- +....
T Consensus 420 IAE--GcM~g~~p-~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~------------------------ 472 (885)
T KOG2023|consen 420 IAE--GCMQGFVP-HLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDE------------------------ 472 (885)
T ss_pred HHH--HHhhhccc-chHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHh------------------------
Confidence 999 22221111 01235888999999999999999999999987531 11111
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhc---CCCchhhhhHHH
Q 004992 438 AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG---STNPKQQLDGAV 514 (720)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~v~~~a~~ 514 (720)
.-..++..|+..+-+++..||++|+.++.-+-......-+..-...+..|+..+. .++--+-..|..
T Consensus 473 ----------~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIg 542 (885)
T KOG2023|consen 473 ----------YFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIG 542 (885)
T ss_pred ----------hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHH
Confidence 1112455667777788999999999999887544332222222223344443333 244445566666
Q ss_pred HHHHHH
Q 004992 515 ALFKLA 520 (720)
Q Consensus 515 aL~~L~ 520 (720)
.|+.-.
T Consensus 543 tlAdsv 548 (885)
T KOG2023|consen 543 TLADSV 548 (885)
T ss_pred HHHHHH
Confidence 665444
No 45
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.2e-10 Score=119.00 Aligned_cols=340 Identities=15% Similarity=0.157 Sum_probs=219.3
Q ss_pred hhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChh-hHHHHHh----C
Q 004992 29 DEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE-VVNWIVE----G 103 (720)
Q Consensus 29 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~-~~~~~~~----~ 103 (720)
.|..|-.|..+--....+........+...+|.+.+.|.+. +.+ .++-|..+|..++.+.. .-+.-+. .
T Consensus 100 gd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~----d~n--~~EgA~~AL~KIcEDsa~~lds~~~~rpl~ 173 (885)
T KOG2023|consen 100 GDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSP----DYN--TCEGAFGALQKICEDSAQFLDSDVLTRPLN 173 (885)
T ss_pred cCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCC----ccc--ccchhHHHHHHHHhhhHHHHhhhcccCchH
Confidence 44455555554444444555555666766666666666554 334 48889999999998632 2111111 1
Q ss_pred CChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 104 g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
-.+|.++++.+++++ .+|..|+.++.... .....-..-+ ..++..+..+-.+.++ +||
T Consensus 174 ~mipkfl~f~~h~sp------------kiRs~A~~cvNq~i~~~~qal~~~i-D~Fle~lFalanD~~~--------eVR 232 (885)
T KOG2023|consen 174 IMIPKFLQFFKHPSP------------KIRSHAVGCVNQFIIIQTQALYVHI-DKFLEILFALANDEDP--------EVR 232 (885)
T ss_pred HhHHHHHHHHhCCCh------------hHHHHHHhhhhheeecCcHHHHHHH-HHHHHHHHHHccCCCH--------HHH
Confidence 267888999999887 99999999998877 3222111111 1244555555444444 999
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHh--CCCHHHHHHhhc-
Q 004992 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLR- 259 (720)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~--~g~l~~L~~ll~- 259 (720)
.+.|..+..|....+. +-.-.-.++++.++..-++.|.+|...||.....++. .+..+..+.. ..++|.|+.-+.
T Consensus 233 k~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae-qpi~~~~L~p~l~kliPvLl~~M~Y 310 (885)
T KOG2023|consen 233 KNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE-QPICKEVLQPYLDKLIPVLLSGMVY 310 (885)
T ss_pred HHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHHHHccCcc
Confidence 9999999999864332 1111223566777777788899999999999999997 5566665544 346777665332
Q ss_pred ---------C-CC---------------------------------------------HHHHHHHHHHHHHhhcCCcchH
Q 004992 260 ---------S-ED---------------------------------------------SAIHYEAVGVIGNLVHSSPNIK 284 (720)
Q Consensus 260 ---------~-~~---------------------------------------------~~v~~~a~~~L~nL~~~~~~~~ 284 (720)
+ ++ -.+|+..+.+|.-|+.- .+
T Consensus 311 sd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv---f~ 387 (885)
T KOG2023|consen 311 SDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV---FG 387 (885)
T ss_pred ccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh---hH
Confidence 0 00 12455555555555311 11
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhc--CChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR--GAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
+.+. .-++|.|-+.|.+..|.+|+.+..+++.++.++ ...++.. .++|.++.+|.+..+-||...+|+|+..+.
T Consensus 388 ~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 388 DELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred HHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 2221 124566666667788999999999999999753 3333332 478999999999999999999999999887
Q ss_pred hhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 363 VITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 363 ~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
..-.......+. ..+..+++.+-+.|..||++||.+...+-.
T Consensus 464 wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 464 WVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred hHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 332222222221 245556666678899999999999888743
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=5.5e-10 Score=117.34 Aligned_cols=259 Identities=18% Similarity=0.218 Sum_probs=204.1
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc--ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHH
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~ 135 (720)
.+..+++.|... .|+..+.+|+.-|+.+.. +++....+--.-.+|.|+.+|+.... +++...
T Consensus 168 k~kkLL~gL~~~-----~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-----------~DIMl~ 231 (1051)
T KOG0168|consen 168 KAKKLLQGLQAE-----SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-----------FDIMLL 231 (1051)
T ss_pred HHHHHHHhcccc-----CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-----------HHHHHH
Confidence 455556655554 366678888888888755 35444433334589999999998766 289999
Q ss_pred HHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHH
Q 004992 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (720)
Q Consensus 136 a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (720)
|+++|.+|+ ..|+....++++++||.|+.-|..-+.. ++-+.++.+|-.++..++ ..+...|++...+.
T Consensus 232 AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ieyi-------DvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Ls 301 (1051)
T KOG0168|consen 232 ACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYI-------DVAEQSLQALEKISRRHP---KAILQAGALSAVLS 301 (1051)
T ss_pred HHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhh-------HHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHH
Confidence 999999999 7899999999999999999888766554 899999999999998666 46788999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccC-ChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh---cCCcchHHHHHHc
Q 004992 215 LLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV---HSSPNIKKEVLAA 290 (720)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~---~~~~~~~~~~~~~ 290 (720)
++.--+..+++.|+.+..|+|.. .++.-..+++ .+|.|..+|...+....+.++.++..++ .+.++.-+.+...
T Consensus 302 ylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~ 379 (1051)
T KOG0168|consen 302 YLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH 379 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch
Confidence 99888889999999999999963 2334445555 5999999999998888887777777776 3455666788889
Q ss_pred CChHHHHHhhccCC----hHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC
Q 004992 291 GALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344 (720)
Q Consensus 291 ~~l~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 344 (720)
|++..+.+++.-.. ..+....++.+..++++++.....+.+.++...|..+|..
T Consensus 380 dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 380 DLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred hHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 99999999987542 3455667788888888878888888888888888888753
No 47
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.32 E-value=7.5e-10 Score=112.81 Aligned_cols=349 Identities=14% Similarity=0.143 Sum_probs=239.6
Q ss_pred CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhc-----CCcHHHHHhhcCCCHHHHHHHHHHH
Q 004992 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-----GGIPPLVELLEFTDTKVQRAAAGAL 231 (720)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~ll~~~~~~v~~~a~~~L 231 (720)
..+..+++++.....+ ++....+..+..+...++.....+.+. +....++.+|..++.-+...++.+|
T Consensus 53 ~y~~~~l~ll~~~~~~-------d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iL 125 (429)
T cd00256 53 QYVKTFVNLLSQIDKD-------DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSIL 125 (429)
T ss_pred HHHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHH
Confidence 4567788888776654 888888888888888766655555543 4567778899888999999999999
Q ss_pred HHhccCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC--ChHHH
Q 004992 232 RTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQ 308 (720)
Q Consensus 232 ~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~ 308 (720)
..+..............-.++.+...+++. +...+..++.++..|... +..+..+.+.++++.|+.+++.. ...+.
T Consensus 126 t~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 126 AKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHH
Confidence 999863332211111111344555666654 456777788899998655 66778888888999999999864 45789
Q ss_pred HHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCc----chhhhhhhcCCHHHHH
Q 004992 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITDM----HNQAGIAHNGGLVPLL 383 (720)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~----~~~~~l~~~~~i~~l~ 383 (720)
.+++.+++-++. ++.........++++.++.+++. ...++.+-++.+|.|+....... .....++..|+++ ++
T Consensus 205 Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l 282 (429)
T cd00256 205 YQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TL 282 (429)
T ss_pred HHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HH
Confidence 999999999975 44455566678999999999976 66889999999999999832111 1223455555554 44
Q ss_pred HHhcC---CChhHHHHHHHHHHhc-------ccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhH
Q 004992 384 KLLDS---KNGSLQHNAAFALYGL-------ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 453 (720)
Q Consensus 384 ~ll~~---~~~~v~~~a~~~L~~l-------~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 453 (720)
+.|.. .++++....-..-..| +..++....+. +|-+ .+ ...+........+..++.+ -...++
T Consensus 283 ~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~-sg~L----~W-Sp~H~se~FW~EN~~kf~~-~~~~ll 355 (429)
T cd00256 283 QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELR-SGRL----HW-SPVHKSEKFWRENADRLNE-KNYELL 355 (429)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHh-cCCc----cC-CCCCCCchHHHHHHHHHHh-cchHHH
Confidence 54433 3566554333332222 22222222221 1221 11 1233333444445555533 236788
Q ss_pred HHHHHHHH-hcchhHHHHHHHHHHhhcCCc-ccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 454 NHLLYLMR-VAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 454 ~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
..|+.++. +.+|.+..-||.=++.++... .++.++.+.|+...+.++++++|++||..|..|+..|.-+
T Consensus 356 k~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 356 KILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999995 557888888999999998764 5888888899999999999999999999999999988654
No 48
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.32 E-value=4.3e-11 Score=103.11 Aligned_cols=117 Identities=37% Similarity=0.505 Sum_probs=109.7
Q ss_pred HHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 004992 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (720)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~ 282 (720)
+.+.|+++.+++++.++++.++..++++|.+++.+.+.....+.+.|+++.++.++.++++.++..++++|+|++...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999987788999999999999999999999999999999999999988777
Q ss_pred hHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHh
Q 004992 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (720)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (720)
....+...|+++.++.++.+.+.++++.++++|.+++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7778888999999999999999999999999999986
No 49
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.30 E-value=1.9e-10 Score=126.89 Aligned_cols=400 Identities=21% Similarity=0.233 Sum_probs=265.3
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHH
Q 004992 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (720)
Q Consensus 62 ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (720)
.+..+.+++.++ ++.++..|+++++++. +++.... .++.+.+++.++++ .||..|+.++.
T Consensus 80 ~~n~l~kdl~~~--n~~~~~lAL~~l~~i~-~~~~~~~-----l~~~v~~ll~~~~~------------~VRk~A~~~l~ 139 (526)
T PF01602_consen 80 IINSLQKDLNSP--NPYIRGLALRTLSNIR-TPEMAEP-----LIPDVIKLLSDPSP------------YVRKKAALALL 139 (526)
T ss_dssp HHHHHHHHHCSS--SHHHHHHHHHHHHHH--SHHHHHH-----HHHHHHHHHHSSSH------------HHHHHHHHHHH
T ss_pred HHHHHHHhhcCC--CHHHHHHHHhhhhhhc-ccchhhH-----HHHHHHHHhcCCch------------HHHHHHHHHHH
Confidence 455566665543 6778999999999988 4443333 46788899998877 99999999999
Q ss_pred Hhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCC
Q 004992 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (720)
Q Consensus 142 ~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (720)
++. .+|+.-. .. .++.+..+|.+.+. .++..|+.++..+ ..++.... -.....+..|.+++...+
T Consensus 140 ~i~~~~p~~~~---~~-~~~~l~~lL~d~~~--------~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~ 205 (526)
T PF01602_consen 140 KIYRKDPDLVE---DE-LIPKLKQLLSDKDP--------SVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPD 205 (526)
T ss_dssp HHHHHCHCCHH---GG-HHHHHHHHTTHSSH--------HHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCS
T ss_pred HHhccCHHHHH---HH-HHHHHhhhccCCcc--------hhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccc
Confidence 999 6666422 22 58899999977765 8999999999998 22222111 111234556666668889
Q ss_pred HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhh
Q 004992 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (720)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll 300 (720)
+-++..+++.+..++...+..... ..+++.+..++.+.++.|...++.++..+....+ ....+++.+..++
T Consensus 206 ~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL 276 (526)
T PF01602_consen 206 PWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLL 276 (526)
T ss_dssp HHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHh
Confidence 999999999999998644444322 3468888888888889999999999999854322 3345788999999
Q ss_pred ccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCH
Q 004992 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGL 379 (720)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i 379 (720)
.++++.++..++..|..++... ...+. . ....+..+. +++..++..++..|..++. ..+... ++
T Consensus 277 ~s~~~nvr~~~L~~L~~l~~~~---~~~v~--~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~----~~n~~~-----Il 341 (526)
T PF01602_consen 277 SSSDPNVRYIALDSLSQLAQSN---PPAVF--N-QSLILFFLLYDDDPSIRKKALDLLYKLAN----ESNVKE-----IL 341 (526)
T ss_dssp TSSSHHHHHHHHHHHHHHCCHC---HHHHG--T-HHHHHHHHHCSSSHHHHHHHHHHHHHH------HHHHHH-----HH
T ss_pred hcccchhehhHHHHHHHhhccc---chhhh--h-hhhhhheecCCCChhHHHHHHHHHhhccc----ccchhh-----HH
Confidence 9989999999999999998643 22222 2 223333444 8899999999999999997 122222 57
Q ss_pred HHHHHHh-cCCChhHHHHHHHHHHhcccC-CCchhHHHhhcccccccc-hhhhhhhhHHHHHHHHHHHHHhhhhhhHHHH
Q 004992 380 VPLLKLL-DSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 456 (720)
Q Consensus 380 ~~l~~ll-~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~v~~L~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 456 (720)
+.|.+.+ ...+..++..++..|..++.. +......++ -.+..+.. +..........+...+.+ .......++..+
T Consensus 342 ~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~-~l~~ll~~~~~~~~~~~~~~i~~ll~~-~~~~~~~~l~~L 419 (526)
T PF01602_consen 342 DELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVD-TLLKLLEISGDYVSNEIINVIRDLLSN-NPELREKILKKL 419 (526)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHH-HHHHHHHCTGGGCHCHHHHHHHHHHHH-STTTHHHHHHHH
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHH-HHHHhhhhccccccchHHHHHHHHhhc-ChhhhHHHHHHH
Confidence 7788888 455888999999999999753 333222221 11111111 011111111111221111 112244578888
Q ss_pred HHHHHh-cchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 457 LYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 457 ~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
...+.+ .++.++..++|+++..+...+... .-...+..+.......++.+|..+..++..+....
T Consensus 420 ~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 420 IELLEDISSPEALAAAIWILGEYGELIENTE--SAPDILRSLIENFIEESPEVKLQILTALAKLFKRN 485 (526)
T ss_dssp HHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhHHHHHHHHHhhhcccCCcccccc--cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhC
Confidence 888876 578899999999999876544300 11123455555556677789999999999998654
No 50
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.30 E-value=5.2e-11 Score=102.58 Aligned_cols=119 Identities=28% Similarity=0.409 Sum_probs=110.0
Q ss_pred HHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCc
Q 004992 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (720)
Q Consensus 244 ~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 323 (720)
.+.+.|+++.++.++.++++.++..++++|.+++..++.....+.+.|+++.++.++.+++++++..++++|.|++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999999999998888888899999999999999999999999999999999998766
Q ss_pred chhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 324 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
.....+.+.|+++.+++.+.+.+..+++.++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 677778889999999999999999999999999999873
No 51
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.29 E-value=5.7e-10 Score=123.19 Aligned_cols=350 Identities=21% Similarity=0.267 Sum_probs=247.9
Q ss_pred hHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
|...+..+--.+..+.. +++.... ++..+.+=|.+++. .+|..|++++++++ +++..+.
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~------------~~~~lAL~~l~~i~-~~~~~~~-- 114 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNP------------YIRGLALRTLSNIR-TPEMAEP-- 114 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSH------------HHHHHHHHHHHHH--SHHHHHH--
T ss_pred CHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCH------------HHHHHHHhhhhhhc-ccchhhH--
Confidence 55567666666777766 3552222 45667777777666 89999999999988 4444433
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (720)
.++.+.+++.++++ .||+.|+.++..+....++.- ... .++.+..++.++++.++..|+.++..+
T Consensus 115 ---l~~~v~~ll~~~~~--------~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 115 ---LIPDVIKLLSDPSP--------YVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ---HHHHHHHHHHSSSH--------HHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcCCch--------HHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 46888999998777 999999999999998666432 222 579999999999999999999999999
Q ss_pred ccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHH
Q 004992 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (720)
Q Consensus 235 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (720)
..++.....+. ...++.|..++...++.++..++.++..++...+..... ...++.+..++++.++.+..+++.+
T Consensus 180 -~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~ 254 (526)
T PF01602_consen 180 -KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRL 254 (526)
T ss_dssp -HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHH
Confidence 21333222222 225667777778899999999999999987655543311 4578889999998889999999999
Q ss_pred HHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh-cCCChhH
Q 004992 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL-DSKNGSL 393 (720)
Q Consensus 315 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~v 393 (720)
+..+... .. .-..+++.+..++.++++.++..++..|..++. .. ...+. .....+..+ .+++..+
T Consensus 255 i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~---~~--~~~v~---~~~~~~~~l~~~~d~~I 320 (526)
T PF01602_consen 255 IIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQ---SN--PPAVF---NQSLILFFLLYDDDPSI 320 (526)
T ss_dssp HHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCC---HC--HHHHG---THHHHHHHHHCSSSHHH
T ss_pred HHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhc---cc--chhhh---hhhhhhheecCCCChhH
Confidence 9988642 22 334578999999999999999999999999998 22 22222 223333344 4889999
Q ss_pred HHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHh-cchhHHHHHH
Q 004992 394 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVA 472 (720)
Q Consensus 394 ~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~-~~~~v~~~a~ 472 (720)
+..++.+|..++.. .+.. .+++.|...+.+ ++++++..++
T Consensus 321 r~~~l~lL~~l~~~-~n~~--------------------------------------~Il~eL~~~l~~~~d~~~~~~~i 361 (526)
T PF01602_consen 321 RKKALDLLYKLANE-SNVK--------------------------------------EILDELLKYLSELSDPDFRRELI 361 (526)
T ss_dssp HHHHHHHHHHH--H-HHHH--------------------------------------HHHHHHHHHHHHC--HHHHHHHH
T ss_pred HHHHHHHHhhcccc-cchh--------------------------------------hHHHHHHHHHHhccchhhhhhHH
Confidence 99999999999853 2222 245566677743 3777888888
Q ss_pred HHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 473 LALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 473 ~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
..++.++....... .-.++.+++++..+++.+...+...+.++...
T Consensus 362 ~~I~~la~~~~~~~----~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~ 407 (526)
T PF01602_consen 362 KAIGDLAEKFPPDA----EWYVDTLLKLLEISGDYVSNEIINVIRDLLSN 407 (526)
T ss_dssp HHHHHHHHHHGSSH----HHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCchH----HHHHHHHHHhhhhccccccchHHHHHHHHhhc
Confidence 88888865542211 12367788888877777777888888877765
No 52
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.28 E-value=3.2e-09 Score=108.26 Aligned_cols=321 Identities=14% Similarity=0.184 Sum_probs=219.9
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc-ChhhHHHHHhC-----CChHHHHHhhcCCCCcccccCCCcchH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEG-----GAVPALVKHLQAPPTSEADRNLKPFEH 130 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~-~~~~~~~~~~~-----g~i~~L~~ll~~~~~~~~~~~~~~~~~ 130 (720)
..+..++..|... ...++....+..+..+.. ++.....+.+. .....++.+|...++
T Consensus 53 ~y~~~~l~ll~~~-----~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~------------ 115 (429)
T cd00256 53 QYVKTFVNLLSQI-----DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQ------------ 115 (429)
T ss_pred HHHHHHHHHHhcc-----CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCch------------
Confidence 3444455555443 234467788888888877 45555555543 567788888887766
Q ss_pred HHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCc
Q 004992 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (720)
Q Consensus 131 ~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (720)
-+...++.+|+.+. .++.........-..+.+...++...+. ..+..++.+|..+.. .+..|..+...+++
T Consensus 116 ~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-------~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v 187 (429)
T cd00256 116 FIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNN-------DYVQTAARCLQMLLR-VDEYRFAFVLADGV 187 (429)
T ss_pred hHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCc-------chHHHHHHHHHHHhC-CchHHHHHHHccCH
Confidence 89999999999998 3333211111111334455555544322 677788899999998 67788888888999
Q ss_pred HHHHHhhcCC--CHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCC------
Q 004992 210 PPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSS------ 280 (720)
Q Consensus 210 ~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~nL~~~~------ 280 (720)
+.|+.+|+.. +..++..++-+++-|+. ++.........++++.++.+++.. .+.+.+-++.++.|+...+
T Consensus 188 ~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~ 266 (429)
T cd00256 188 PTLVKLLSNATLGFQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVK 266 (429)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchh
Confidence 9999999763 56899999999999998 555666666788999999999875 5578888999999998643
Q ss_pred cchHHHHHHcCChHHHHHhhccC--ChHHHHHHHH-------HHHHHhcc--------------Cc---------chhhH
Q 004992 281 PNIKKEVLAAGALQPVIGLLSSC--CSESQREAAL-------LLGQFAAT--------------DS---------DCKVH 328 (720)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~-------~L~~l~~~--------------~~---------~~~~~ 328 (720)
......++..|+++.+-.+.... ++++....-. .+..+++. ++ ++...
T Consensus 267 ~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~k 346 (429)
T cd00256 267 KTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADR 346 (429)
T ss_pred hhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHH
Confidence 12334556666666444444322 3443222111 11112110 01 12223
Q ss_pred HHhc--CChHHHHHHhc-CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 004992 329 IVQR--GAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 329 ~~~~--~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (720)
+-+. .++..|+++|. +.++.+..-||.=++.++. .+|..+..+.+-|+=..+.+++.++|++|+..|+.++..|.
T Consensus 347 f~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr--~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 347 LNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVR--HYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHH--HCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3332 35678888884 5678888889999999999 35667777778899999999999999999999999998874
No 53
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.2e-09 Score=105.68 Aligned_cols=190 Identities=21% Similarity=0.233 Sum_probs=165.2
Q ss_pred ccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChh
Q 004992 70 FSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE 148 (720)
Q Consensus 70 l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~ 148 (720)
+...+.+.+-++.|+.-|..++.+-++...+.+.|++..++.++++++. .+|+.|+++++..+ ++|.
T Consensus 90 ~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~------------~lR~~Aa~Vigt~~qNNP~ 157 (342)
T KOG2160|consen 90 LNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA------------ELRELAARVIGTAVQNNPK 157 (342)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH------------HHHHHHHHHHHHHHhcCHH
Confidence 3334566777999999999999988888999999999999999999888 99999999999999 9999
Q ss_pred hHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC--CCHHHHHH
Q 004992 149 HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRA 226 (720)
Q Consensus 149 ~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~ 226 (720)
.+..+++.|+++.|+..+..+.+. +++..|+.+++.+...++.....+...++...|...+.+ .+..++..
T Consensus 158 ~Qe~v~E~~~L~~Ll~~ls~~~~~-------~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK 230 (342)
T KOG2160|consen 158 SQEQVIELGALSKLLKILSSDDPN-------TVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRK 230 (342)
T ss_pred HHHHHHHcccHHHHHHHHccCCCc-------hHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHH
Confidence 999999999999999999966664 888999999999999999988889889999999999988 56888899
Q ss_pred HHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 004992 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 227 a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~ 278 (720)
++..+..+..........+...+....+..+....+.++++.++.++..+..
T Consensus 231 ~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 231 ALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 9999999998666666666666667777777777888888888888777753
No 54
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=6.3e-08 Score=101.32 Aligned_cols=404 Identities=15% Similarity=0.108 Sum_probs=247.5
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc--ChhhHHHHHhC--C--------ChHHHHHhhcCCCCcccccCCC
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEG--G--------AVPALVKHLQAPPTSEADRNLK 126 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~--~~~~~~~~~~~--g--------~i~~L~~ll~~~~~~~~~~~~~ 126 (720)
.+..+..|...+.........|..|--.|.|-.. +++......+. + +=..++.-|.++.+
T Consensus 33 f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep-------- 104 (859)
T KOG1241|consen 33 FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEP-------- 104 (859)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC--------
Confidence 3444444444444334555567777777777544 34333333221 0 11123444554444
Q ss_pred cchHHHHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHH
Q 004992 127 PFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (720)
Q Consensus 127 ~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 204 (720)
.....|+.+++.++ .-|. +..|-|+..|.+.-...... .+++.++.+|..+|.+-.+-...-.
T Consensus 105 ----~~~s~Aaq~va~IA~~ElP~--------n~wp~li~~lv~nv~~~~~~---~~k~~slealGyice~i~pevl~~~ 169 (859)
T KOG1241|consen 105 ----RRPSSAAQCVAAIACIELPQ--------NQWPELIVTLVSNVGEEQAS---MVKESSLEALGYICEDIDPEVLEQQ 169 (859)
T ss_pred ----CccchHHHHHHHHHHhhCch--------hhCHHHHHHHHHhcccccch---HHHHHHHHHHHHHHccCCHHHHHHH
Confidence 55667788888877 3332 34455555554332221111 6889999999999975443221111
Q ss_pred hcCCcHHHHHhhc--CCCHHHHHHHHHHHHHhccCChhc-HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 004992 205 MEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (720)
Q Consensus 205 ~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~-~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~ 281 (720)
...++..++.-.+ .++..+|..|+.+|.+--.....+ -...-..-++...+..-++++.+++..|..+|..+....=
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 2234445554443 356899999999999766311111 1111122356677778888999999999999999874433
Q ss_pred chHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcch---------------hhHHH---hcCChHHHHHHhc
Q 004992 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC---------------KVHIV---QRGAVRPLIEMLQ 343 (720)
Q Consensus 282 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---------------~~~~~---~~~~~~~L~~ll~ 343 (720)
..-+.-....++..-+.-+.+.++++...+...-+++|...-+. ...+. -.+++|.|+++|.
T Consensus 250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 33333344556777777788889999999999999887421110 00111 1267788888884
Q ss_pred C-------CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHh
Q 004992 344 S-------PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 416 (720)
Q Consensus 344 ~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 416 (720)
. +++....+|..+|.-+++.. +..++. .+++.+-+-+.++++.-+..+..+++.+...++....
T Consensus 330 kqde~~d~DdWnp~kAAg~CL~l~A~~~-----~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~L--- 400 (859)
T KOG1241|consen 330 KQDEDDDDDDWNPAKAAGVCLMLFAQCV-----GDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKL--- 400 (859)
T ss_pred hCCCCcccccCcHHHHHHHHHHHHHHHh-----cccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhh---
Confidence 3 34678888999998888722 223333 4556666677899999999999999999776543110
Q ss_pred hcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccch--hhhccCcH
Q 004992 417 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRT--IFIDGGGL 494 (720)
Q Consensus 417 ~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~ 494 (720)
...-.+.++.++.++.+++-.++..++++|+.++..-.... .......+
T Consensus 401 -----------------------------t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l 451 (859)
T KOG1241|consen 401 -----------------------------TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKL 451 (859)
T ss_pred -----------------------------hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHH
Confidence 01122367788999999999999999999999987644111 11122223
Q ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHhhcc
Q 004992 495 ELLLGLLGSTNPKQQLDGAVALFKLANKAT 524 (720)
Q Consensus 495 ~~L~~ll~~~~~~v~~~a~~aL~~L~~~~~ 524 (720)
+.+..=+. +.|.+-..++|++.+|+.+.+
T Consensus 452 ~~l~~gL~-DePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 452 SALLEGLN-DEPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred HHHHHHhh-hCchHHHHHHHHHHHHHHHHH
Confidence 33333222 568899999999999997653
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=99.15 E-value=5.9e-08 Score=107.03 Aligned_cols=352 Identities=15% Similarity=0.072 Sum_probs=234.7
Q ss_pred hHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
|.+++...--.+.+.+. +++..-. ++..+.+=+.++++ .+|-.|+++|+++-. ++..+
T Consensus 81 d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np------------~IRaLALRtLs~Ir~-~~i~e--- 139 (746)
T PTZ00429 81 DLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSP------------VVRALAVRTMMCIRV-SSVLE--- 139 (746)
T ss_pred CHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCH------------HHHHHHHHHHHcCCc-HHHHH---
Confidence 55567666667777776 3543222 45666666666655 899999999988773 22222
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (720)
-.++.+.+.+.+.++ -||+.|+.++..+...+++ .+...+.++.|..++.+.++.|..+|+.+|..+
T Consensus 140 --~l~~~lkk~L~D~~p--------YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 140 --YTLEPLRRAVADPDP--------YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred --HHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 235677777877666 9999999999999875553 344567889999999999999999999999999
Q ss_pred ccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHH
Q 004992 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (720)
Q Consensus 235 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (720)
...++... -...+.+..|+..+.+-++..+...+.+|.... +..... ...++..+...+++.++.+..+|+.+
T Consensus 207 ~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~ 279 (746)
T PTZ00429 207 NDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKV 279 (746)
T ss_pred HHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 86444322 122345777788887778888877777775543 222122 13467788888899999999999999
Q ss_pred HHHHhccCc-chhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhH
Q 004992 315 LGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSL 393 (720)
Q Consensus 315 L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v 393 (720)
+.++....+ .....+. ..+.+.++.+ .+.+++++..++..+..++. .. ..+.... +..+.-..+++. .+
T Consensus 280 il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~---~~---P~lf~~~-~~~Ff~~~~Dp~-yI 349 (746)
T PTZ00429 280 VANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLV---IF---PNLLRTN-LDSFYVRYSDPP-FV 349 (746)
T ss_pred HHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHH---HC---HHHHHHH-HHhhhcccCCcH-HH
Confidence 999874321 2111111 1233556665 45678999999999988877 11 1222221 333333334444 48
Q ss_pred HHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHH
Q 004992 394 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 473 (720)
Q Consensus 394 ~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~ 473 (720)
+...+.+|..|+.. .+... ++..|.....+.+.+++..+++
T Consensus 350 K~~KLeIL~~Lane-~Nv~~--------------------------------------IL~EL~eYa~d~D~ef~r~aIr 390 (746)
T PTZ00429 350 KLEKLRLLLKLVTP-SVAPE--------------------------------------ILKELAEYASGVDMVFVVEVVR 390 (746)
T ss_pred HHHHHHHHHHHcCc-ccHHH--------------------------------------HHHHHHHHhhcCCHHHHHHHHH
Confidence 99999999999853 44332 3345666777778889999999
Q ss_pred HHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 474 ALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 474 ~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
+++.++..... ....++..|.+++..+.. +...+..++.++.+.
T Consensus 391 AIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 391 AIASLAIKVDS----VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK 434 (746)
T ss_pred HHHHHHHhChH----HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence 99999765432 133557788888876443 444567777777653
No 56
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.2e-08 Score=103.44 Aligned_cols=432 Identities=18% Similarity=0.167 Sum_probs=258.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC--hhhHHHHHhCCChHHHHHhhcCCCCccc
Q 004992 44 AGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEA 121 (720)
Q Consensus 44 ~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 121 (720)
+..+.+...+........++..+.......+++..+|..|+.+|.|-..- ....+..-.+=++...++.-.+++.
T Consensus 155 Gyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~--- 231 (859)
T KOG1241|consen 155 GYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE--- 231 (859)
T ss_pred HHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH---
Confidence 33333333344444444444445555444467777999999999886541 1111122222244455555555555
Q ss_pred ccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCch--
Q 004992 122 DRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-- 198 (720)
Q Consensus 122 ~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-- 198 (720)
+++..|..+|.+|. -..+.-..-+.......-+.-+++.++ +|...++...+++|...-+
T Consensus 232 ---------~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~d--------eValQaiEFWsticeEEiD~~ 294 (859)
T KOG1241|consen 232 ---------EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDND--------EVALQAIEFWSTICEEEIDLA 294 (859)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 444444444445566677777786666 9999999999988852111
Q ss_pred --------------hhHH--HHhcCCcHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHH
Q 004992 199 --------------IKTR--VRMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 255 (720)
Q Consensus 199 --------------~~~~--~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~ 255 (720)
.... -...+.+|.|+++|.. .++....+|..||.-++. -..+.++.. ++|-+-
T Consensus 295 ~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~---~~~D~Iv~~-Vl~Fie 370 (859)
T KOG1241|consen 295 IEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ---CVGDDIVPH-VLPFIE 370 (859)
T ss_pred HHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---Hhcccchhh-hHHHHH
Confidence 0000 0112567888888843 236677777777777774 222233332 555555
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhh-HHHhcCC
Q 004992 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-HIVQRGA 334 (720)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~ 334 (720)
.-+++++-.-|..++.+++.+-.+.+..+..-+..+++|.++.++.++.--++..++|+++.++...++... .......
T Consensus 371 e~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~ 450 (859)
T KOG1241|consen 371 ENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSK 450 (859)
T ss_pred HhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHH
Confidence 577788889999999999999877666666677789999999999988888889999999999976654432 2233455
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhhhhc--Ccch-hhhhhhcCCHHHHHH-Hhc---C---CChhHHHHHHHHHHhc
Q 004992 335 VRPLIEMLQSPDVQLREMSAFALGRLAQVIT--DMHN-QAGIAHNGGLVPLLK-LLD---S---KNGSLQHNAAFALYGL 404 (720)
Q Consensus 335 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~-~~~l~~~~~i~~l~~-ll~---~---~~~~v~~~a~~~L~~l 404 (720)
++.++..|.+ .|.+..+++|++.+|+.+.. ...+ +..... ...+.++. +++ . .....|..+-.+|..+
T Consensus 451 l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl 528 (859)
T KOG1241|consen 451 LSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL 528 (859)
T ss_pred HHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 6667777664 78999999999999996211 0111 111222 23334443 332 1 3567888999999888
Q ss_pred ccCCC-chhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHH-HhcchhHHHHHHHHHHhhcCCc
Q 004992 405 ADNED-NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 405 ~~~~~-~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~ 482 (720)
..+.. ....++. ....-++.++....++ ..+.+- +..-.+++..-+.+|..+....
T Consensus 529 Ik~st~~vy~~v~------------------~~~l~il~kl~q~i~~----~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~ 586 (859)
T KOG1241|consen 529 IKNSTDDVYPMVQ------------------KLTLVILEKLDQTISS----QILSLADRAQLNELQSLLCNTLQSIIRKV 586 (859)
T ss_pred HHcCcHHHHHHHH------------------HHHHHHHHHHHHHHHH----HhccHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 66432 2222111 0011111222111110 111111 1123355666666666664432
Q ss_pred ccchhhhccCcHHHHHHhhcC-CCchhhhhHHHHHHHHHhhc
Q 004992 483 DQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 483 ~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~L~~~~ 523 (720)
..+..-.....+..|.+++++ +..-+.+.|-.++..|+.+.
T Consensus 587 ~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~L 628 (859)
T KOG1241|consen 587 GSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESL 628 (859)
T ss_pred cccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH
Confidence 222222344567788888888 44447778888888777654
No 57
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.12 E-value=4e-09 Score=108.60 Aligned_cols=339 Identities=16% Similarity=0.123 Sum_probs=213.4
Q ss_pred HccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHH---Hhc-cChhhHHHH----HHcCChH-
Q 004992 90 LAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG---LLA-VKPEHQQLI----VDNGALS- 160 (720)
Q Consensus 90 l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~---~L~-~~~~~~~~~----~~~~~l~- 160 (720)
++..++++..+...|+.+.+.-++...+. .+|.+|+.++. ++. ++|.....+ .+.|+.+
T Consensus 167 ~s~~~~hq~Il~Na~i~ekI~~l~~~~s~------------~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r 234 (678)
T KOG1293|consen 167 LSSTKDHQLILCNAGILEKINILLMYLSS------------KLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIR 234 (678)
T ss_pred ccccchhhheeccccchhhHHHHHHhhhH------------HHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchh
Confidence 34446777777778888877766665555 89999999999 777 665544333 3345555
Q ss_pred -HHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCc--hhh---HHHHhcCCcHHH-----HHhhcCCCHHHHHHHHH
Q 004992 161 -HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS--SIK---TRVRMEGGIPPL-----VELLEFTDTKVQRAAAG 229 (720)
Q Consensus 161 -~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~--~~~---~~~~~~~~i~~L-----~~ll~~~~~~v~~~a~~ 229 (720)
.+..++++... +.+..++.++.+++..+- ..+ ..+.+.| -..+ +.+..++-......++.
T Consensus 235 ~~v~rL~k~~~~--------s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmg-d~~i~q~~~i~l~~~P~~s~l~~~~~ 305 (678)
T KOG1293|consen 235 CVVTRLLKDPDF--------SERLRSLECLVPYLRKSFNYDPLPWWFIFFDMG-DSLIVQYNCIVLMNDPGLSTLDHTNV 305 (678)
T ss_pred hhhhhhhhCCCc--------cHHHHHHHHHHHHHhccccccccccceeeccCc-hHHHHHHhhheeecCCceeehhhhhh
Confidence 55666676666 666778888888875441 111 1112222 1111 11223333233334444
Q ss_pred HHHHhccCChhcHHHHHhCCCHHHHHHhhc------CCCHHHHHHHHHHH---HHhhcCC-cchHHHHHHcCChHHHHHh
Q 004992 230 ALRTLAFKNDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVI---GNLVHSS-PNIKKEVLAAGALQPVIGL 299 (720)
Q Consensus 230 ~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~------~~~~~v~~~a~~~L---~nL~~~~-~~~~~~~~~~~~l~~L~~l 299 (720)
..+.++.--...+....+....+.+++++. ...+..+.-++.-. ..++... -..++.+.+......+...
T Consensus 306 l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~ 385 (678)
T KOG1293|consen 306 LFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCL 385 (678)
T ss_pred hHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccc
Confidence 444444322333444444555666666553 23444443222211 1111111 1233444444444444444
Q ss_pred hccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCH
Q 004992 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGL 379 (720)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i 379 (720)
.-..+...+.+++..+.+++..-...+..+-..++..++++++.+++..+...++++++|+.. .....+..+...|++
T Consensus 386 ~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm--efs~~kskfl~~ngI 463 (678)
T KOG1293|consen 386 PPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM--EFSNLKSKFLRNNGI 463 (678)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh--hcccHHHHHHHcCcH
Confidence 445567888888888888875333333345556789999999999999999999999999998 355678889999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 004992 380 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL 459 (720)
Q Consensus 380 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~l 459 (720)
+.+.+++.+.++.++..+.|+|+++.-+.+....+.- ...-....+..+
T Consensus 464 d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~-------------------------------~~ki~a~~i~~l 512 (678)
T KOG1293|consen 464 DILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQL-------------------------------LAKIPANLILDL 512 (678)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHH-------------------------------HHHhhHHHHHHH
Confidence 9999999999999999999999999765443221111 111234567788
Q ss_pred HHhcchhHHHHHHHHHHhhcCCc
Q 004992 460 MRVAEKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 460 l~~~~~~v~~~a~~~L~~l~~~~ 482 (720)
..+++++||+.+...|.||..+.
T Consensus 513 ~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 513 INDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999997763
No 58
>PTZ00429 beta-adaptin; Provisional
Probab=99.08 E-value=1.3e-07 Score=104.44 Aligned_cols=362 Identities=14% Similarity=0.054 Sum_probs=238.0
Q ss_pred CChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHH
Q 004992 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (720)
Q Consensus 104 g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (720)
|=+.-|...|.+.+.. +-+...-+++..++.+.+. ..+.+.+++++...+- ++++
T Consensus 32 ge~~ELr~~L~s~~~~-----------~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~--------elKK 86 (746)
T PTZ00429 32 GEGAELQNDLNGTDSY-----------RKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDL--------ELKK 86 (746)
T ss_pred chHHHHHHHHHCCCHH-----------HHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCH--------HHHH
Confidence 4445556666655441 3455555567777644443 2245666777766654 8888
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCH
Q 004992 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (720)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~ 263 (720)
.+--.+.+++..+++.. +. .+..+.+-+.++|+.+|..|+++|+.+-. +. +.+. +++.+.+.+.+.++
T Consensus 87 LvYLYL~~ya~~~pela--lL---aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~----i~e~-l~~~lkk~L~D~~p 154 (746)
T PTZ00429 87 LVYLYVLSTARLQPEKA--LL---AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SS----VLEY-TLEPLRRAVADPDP 154 (746)
T ss_pred HHHHHHHHHcccChHHH--HH---HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HH----HHHH-HHHHHHHHhcCCCH
Confidence 88888888887555432 22 46888889999999999999999998874 22 3332 56778888899999
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhc
Q 004992 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (720)
Q Consensus 264 ~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 343 (720)
.||+.|+.++.++...+++ .+...++++.|..++.+.++.+..+|+.+|..+...++.. .-...+.+..++..+.
T Consensus 155 YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~ 229 (746)
T PTZ00429 155 YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLP 229 (746)
T ss_pred HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhh
Confidence 9999999999999766554 2345678999999999999999999999999997644432 1223445677777777
Q ss_pred CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhh---ccc
Q 004992 344 SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV---GGV 420 (720)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~---~~v 420 (720)
+.++-.+...+.+|.... +..... ....+..+...+++.|+.|...|+.++.++..... ..+... ...
T Consensus 230 e~~EW~Qi~IL~lL~~y~-----P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~--~~~~~~~~~rl~ 300 (746)
T PTZ00429 230 ECNEWGQLYILELLAAQR-----PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS--QELIERCTVRVN 300 (746)
T ss_pred cCChHHHHHHHHHHHhcC-----CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC--HHHHHHHHHHHH
Confidence 777777777777775422 221111 12457778888889999999999999999976421 111111 011
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHH---HhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHH
Q 004992 421 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM---RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELL 497 (720)
Q Consensus 421 ~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L 497 (720)
..++.........+..+..++..+.... ..++..-++.+ .++...++...+.+|..++...+...+ +.-|
T Consensus 301 ~pLv~L~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~I------L~EL 373 (746)
T PTZ00429 301 TALLTLSRRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEI------LKEL 373 (746)
T ss_pred HHHHHhhCCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHH------HHHH
Confidence 1122211111222333333333332222 22222223222 123335899999999999987765554 4667
Q ss_pred HHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 498 LGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 498 ~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.+...+.+.+.+..+..++..++..-
T Consensus 374 ~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 374 AEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 77888889999999999999999753
No 59
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.7e-07 Score=98.43 Aligned_cols=292 Identities=15% Similarity=0.188 Sum_probs=221.6
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (720)
.|+.|+.-+.+... ++-|+.|+..|..++ ...|..+... ++++++..|..+..++ ++...
T Consensus 23 TI~kLcDRvessTL-----------~eDRR~A~rgLKa~s--rkYR~~Vga~-Gmk~li~vL~~D~~D~------E~ik~ 82 (970)
T KOG0946|consen 23 TIEKLCDRVESSTL-----------LEDRRDAVRGLKAFS--RKYREEVGAQ-GMKPLIQVLQRDYMDP------EIIKY 82 (970)
T ss_pred HHHHHHHHHhhccc-----------hhhHHHHHHHHHHHH--HHHHHHHHHc-ccHHHHHHHhhccCCH------HHHHH
Confidence 56677766665543 166889999999999 6777777665 5789999998776655 99999
Q ss_pred HHHHHHHhhhcCc------hhh-----------HHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hcHHHHH
Q 004992 185 AADAITNLAHENS------SIK-----------TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIV 246 (720)
Q Consensus 185 a~~~L~~l~~~~~------~~~-----------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~i~ 246 (720)
++..+.++....+ ..+ ..+...+.|..++..+...|-.||..+...+.++....+ +.++.+.
T Consensus 83 ~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 83 ALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred HHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999987542 111 123345788999999999999999999999998876433 4455554
Q ss_pred -hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC---C-hHHHHHHHHHHHHHhcc
Q 004992 247 -ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---C-SESQREAALLLGQFAAT 321 (720)
Q Consensus 247 -~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~---~-~~~~~~a~~~L~~l~~~ 321 (720)
..-+|..++.+|.+....+|..++-.|..++.+++..++.++-.+++..|..++... + .-+...|+..|.|+-..
T Consensus 163 ~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 163 VSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred HCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999999988888899999999999753 2 35778899999999988
Q ss_pred CcchhhHHHhcCChHHHHHHhcC---CCH-----H-----HHHHHHHHHHHHhhhhcCc----chhhhhhhcCCHHHHHH
Q 004992 322 DSDCKVHIVQRGAVRPLIEMLQS---PDV-----Q-----LREMSAFALGRLAQVITDM----HNQAGIAHNGGLVPLLK 384 (720)
Q Consensus 322 ~~~~~~~~~~~~~~~~L~~ll~~---~~~-----~-----v~~~a~~~L~~l~~~~~~~----~~~~~l~~~~~i~~l~~ 384 (720)
+..+...+.+.+.+|.|.++|.. .+. . -...++.++..+...++.+ .++..+...+++..|..
T Consensus 243 N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~ 322 (970)
T KOG0946|consen 243 NISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCT 322 (970)
T ss_pred CcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHH
Confidence 88899999999999999988742 221 1 1334566666666522222 23456788899999999
Q ss_pred HhcCC--ChhHHHHHHHHHHhcccC-CCchhHHHh
Q 004992 385 LLDSK--NGSLQHNAAFALYGLADN-EDNVADFIR 416 (720)
Q Consensus 385 ll~~~--~~~v~~~a~~~L~~l~~~-~~~~~~l~~ 416 (720)
++.++ ...|+..+.-++.+..+. ..+...|..
T Consensus 323 il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 323 ILMHPGVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred HHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 88665 567888888888888764 334444444
No 60
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.2e-08 Score=104.50 Aligned_cols=221 Identities=19% Similarity=0.198 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCC-CCcccccCCCcchH
Q 004992 53 QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAP-PTSEADRNLKPFEH 130 (720)
Q Consensus 53 ~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~~~~~~~ 130 (720)
-.+...+|-++.+|... .+.++...|+++|.+++.- |.....++..++||.|+.-|..- -.
T Consensus 207 fpv~slvp~Lv~LL~~E-----~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ieyi------------ 269 (1051)
T KOG0168|consen 207 FPVKSLVPVLVALLSHE-----HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYI------------ 269 (1051)
T ss_pred ccHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhh------------
Confidence 33555677777777665 5677999999999999994 88889999999999998755443 33
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchh-hHHHHhcCCc
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI-KTRVRMEGGI 209 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i 209 (720)
+|-++++.+|-.|+ .+.-..+...|++...+.+|.--.- .+++.|+.+..|+|..-..- -..+ ...+
T Consensus 270 DvAEQ~LqALE~iS--R~H~~AiL~AG~l~a~LsylDFFSi--------~aQR~AlaiaaN~Cksi~sd~f~~v--~eal 337 (1051)
T KOG0168|consen 270 DVAEQSLQALEKIS--RRHPKAILQAGALSAVLSYLDFFSI--------HAQRVALAIAANCCKSIRSDEFHFV--MEAL 337 (1051)
T ss_pred HHHHHHHHHHHHHH--hhccHHHHhcccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCccchHH--HHHH
Confidence 89999999999999 3334567889999999999987666 88999999999999643222 1223 3578
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccC---ChhcHHHHHhCCCHHHHHHhhcCC----CHHHHHHHHHHHHHhhcCCcc
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPN 282 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~---~~~~~~~i~~~g~l~~L~~ll~~~----~~~v~~~a~~~L~nL~~~~~~ 282 (720)
|.|..+|...+....+.++-++..++.+ .++.-+.+...|++.....++.-. +..+....++.+..++.+.+.
T Consensus 338 PlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl 417 (1051)
T KOG0168|consen 338 PLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPL 417 (1051)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChH
Confidence 9999999999999999999999988853 345566777888999888888643 224555667788888888787
Q ss_pred hHHHHHHcCChHHHHHhhcc
Q 004992 283 IKKEVLAAGALQPVIGLLSS 302 (720)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~~ 302 (720)
....+...++...+..+|..
T Consensus 418 ~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 418 LFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHhhHHHHHHHHHhc
Confidence 77777778887777777763
No 61
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.6e-08 Score=95.58 Aligned_cols=184 Identities=18% Similarity=0.172 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 004992 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (720)
Q Consensus 129 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (720)
+++-++.|+.-|..++++-++...++..|++..++..+++.+. ++|..|++++...+..+|..+..+.+.|+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~--------~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA--------ELRELAARVIGTAVQNNPKSQEQVIELGA 167 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH--------HHHHHHHHHHHHHHhcCHHHHHHHHHccc
Confidence 3477889999999999888999999999999999999988877 99999999999999999999999999999
Q ss_pred cHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCcchHH
Q 004992 209 IPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKK 285 (720)
Q Consensus 209 i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~v~~~a~~~L~nL~~~~~~~~~ 285 (720)
++.|+..+.++ +..++..|+.+++.+...++.....+...++...|...+.+ .+...+..++..+..+.........
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999998754 57888999999999999999999999988899999999998 5667888999999999877666666
Q ss_pred HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhc
Q 004992 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (720)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 320 (720)
.+...++...+..+....+++++..+..++..+..
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 66666777777777777788888888887776653
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.99 E-value=2.6e-08 Score=98.05 Aligned_cols=274 Identities=20% Similarity=0.263 Sum_probs=206.2
Q ss_pred HHHHhcCCcHHHHHhhcCCC--HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 004992 201 TRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 201 ~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~ 277 (720)
..+...|++..|++++..++ ..++..+.+.|-.+. ..++++.++..| +..++.+.+. +.++.....+.+|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 35677899999999999887 456999999999988 578888888875 6666666655 45588888999999999
Q ss_pred cCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccC-cchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHH
Q 004992 278 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 356 (720)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 356 (720)
.++++.++.++..|+++.++-+....++.+.++++.+|.|++-.. ...+..+++....++|..+..+.+.-.|..|+-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998643 3456678888888999988888899999999999
Q ss_pred HHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHH
Q 004992 357 LGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDC 436 (720)
Q Consensus 357 L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~ 436 (720)
++.++. ..+....+..+|.+..+--++.+.++.- ++++.. ...
T Consensus 331 V~vlat---~KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~h---d~a--------------------- 373 (832)
T KOG3678|consen 331 VAVLAT---NKEVEREVRKSGTLALVEPLVASLDPGR----------FARDAH---DYA--------------------- 373 (832)
T ss_pred Hhhhhh---hhhhhHHHhhccchhhhhhhhhccCcch----------hhhhhh---hhh---------------------
Confidence 999998 6666666777777665555554444321 111100 000
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCc---ccchhhhccCcHHHHHHhhcCCCchhhhhHH
Q 004992 437 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD---DQRTIFIDGGGLELLLGLLGSTNPKQQLDGA 513 (720)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 513 (720)
.-...+.+++|+.++.+.--+.|..++.-++.=+.-. ...+.+.+.|.++.|.++.++++.--...|.
T Consensus 374 ---------QG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAs 444 (832)
T KOG3678|consen 374 ---------QGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFAS 444 (832)
T ss_pred ---------ccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 0112346778888888665555554444443332211 2345677889999999999999888888899
Q ss_pred HHHHHHHhhc
Q 004992 514 VALFKLANKA 523 (720)
Q Consensus 514 ~aL~~L~~~~ 523 (720)
++|.-+-+..
T Consensus 445 eALtviGEEV 454 (832)
T KOG3678|consen 445 EALTVIGEEV 454 (832)
T ss_pred HHHHHhcccc
Confidence 9998888754
No 63
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.98 E-value=3.6e-07 Score=89.79 Aligned_cols=351 Identities=15% Similarity=0.158 Sum_probs=229.1
Q ss_pred ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHh------cCCcHHHHHhhcCCCHHHHHHHHHHH
Q 004992 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM------EGGIPPLVELLEFTDTKVQRAAAGAL 231 (720)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (720)
.+..++.++.....+ +....++..+..+.+.+......+.. .-..+..+.++...+.-+...+.+++
T Consensus 66 ~v~~fi~LlS~~~kd-------d~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Il 138 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKD-------DTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRIL 138 (442)
T ss_pred HHHHHHHHhchhhhH-------HHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHH
Confidence 466777777766554 66666776666666544332222211 12356778889888988888888999
Q ss_pred HHhccCChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhcc--CChHHH
Q 004992 232 RTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQ 308 (720)
Q Consensus 232 ~~L~~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~ 308 (720)
..++......-..-.-.=....|...+++ .+.+....++++|..+... ++.+-.+...+++..++..+.+ .+..++
T Consensus 139 s~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 139 SKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHH
Confidence 88885222111100000013344445555 5667788888899999755 6667778888888888888843 357889
Q ss_pred HHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCcchhh----hhhhcCCHHHHH
Q 004992 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITDMHNQA----GIAHNGGLVPLL 383 (720)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~----~l~~~~~i~~l~ 383 (720)
.+.+.+++-++. ++.....+...+.++.|.+.+++ ...+|-+-++.++.|+...+...+.+. .++..++.+.+-
T Consensus 218 YqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 218 YQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQ 296 (442)
T ss_pred HHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHH
Confidence 999999999975 56666777778999999999987 567899999999999998332222332 344455544444
Q ss_pred HHhc--CCChhHHHHHHHHHHhcccCCCchhHH------HhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHH
Q 004992 384 KLLD--SKNGSLQHNAAFALYGLADNEDNVADF------IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 455 (720)
Q Consensus 384 ~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~l------~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 455 (720)
.+.. -.++++....-..-..|-.+......+ +..|.++ +...+........+...+ ..-...++..
T Consensus 297 ~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~-----WSP~Hk~e~FW~eNa~rl-nennyellki 370 (442)
T KOG2759|consen 297 SLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLE-----WSPVHKSEKFWRENADRL-NENNYELLKI 370 (442)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcC-----CCccccccchHHHhHHHH-hhccHHHHHH
Confidence 4442 246666555444444433221111111 1122211 111222233333344333 2235568999
Q ss_pred HHHHHHhcc-hhHHHHHHHHHHhhcCC-cccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 456 LLYLMRVAE-KGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 456 L~~ll~~~~-~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
|+++++.++ |.+-..|+.=++.+.+. +.++..+.+.||-..+.+|++++||+||+.|..|+..|..+.
T Consensus 371 L~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 371 LIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHN 440 (442)
T ss_pred HHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence 999998874 88888888888888765 568888899999999999999999999999999999887654
No 64
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.98 E-value=2.3e-07 Score=91.13 Aligned_cols=320 Identities=14% Similarity=0.198 Sum_probs=214.0
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHh-------CCChHHHHHhhcCCCCcccccCCCcchH
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVE-------GGAVPALVKHLQAPPTSEADRNLKPFEH 130 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~-------~g~i~~L~~ll~~~~~~~~~~~~~~~~~ 130 (720)
.+.+++.++... +.|. ....++..+..+......+..+.. .-.-+..+.+|...++
T Consensus 66 ~v~~fi~LlS~~----~kdd-~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~------------ 128 (442)
T KOG2759|consen 66 YVKTFINLLSHI----DKDD-TVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDT------------ 128 (442)
T ss_pred HHHHHHHHhchh----hhHH-HHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCCh------------
Confidence 344444444443 2222 445555566665553333332221 2235677888888777
Q ss_pred HHHHHHHHHHHHhc-cChhhHHHHHH-cCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 004992 131 EVEKGSAFALGLLA-VKPEHQQLIVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (720)
Q Consensus 131 ~v~~~a~~~L~~L~-~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (720)
-+...+.++++.++ .++.. ....+ .=....+-..+.++.++ +....+++||..+.. .++.|..+...++
T Consensus 129 ~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~-------~~~~~~~rcLQ~ll~-~~eyR~~~v~adg 199 (442)
T KOG2759|consen 129 FIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNN-------DYIQFAARCLQTLLR-VDEYRYAFVIADG 199 (442)
T ss_pred HHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCC-------chHHHHHHHHHHHhc-CcchhheeeecCc
Confidence 78888999999998 32221 11000 00123344445553333 777889999999998 6778888888999
Q ss_pred cHHHHHhhc--CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCc----
Q 004992 209 IPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSP---- 281 (720)
Q Consensus 209 i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~nL~~~~~---- 281 (720)
+..++..+. ..+..++...+.+++.|+. ++...+.+...+.++.|..++++. ...|.+-++.++.|+....+
T Consensus 200 ~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~ 278 (442)
T KOG2759|consen 200 VSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRET 278 (442)
T ss_pred chhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhH
Confidence 999998883 3468999999999999998 666667777788999999999875 45788889999999987654
Q ss_pred --chHHHHHHcCChHHHHHhhccC--ChHHHHHHHHH-------HHHHhccC-----------------------cchhh
Q 004992 282 --NIKKEVLAAGALQPVIGLLSSC--CSESQREAALL-------LGQFAATD-----------------------SDCKV 327 (720)
Q Consensus 282 --~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~-------L~~l~~~~-----------------------~~~~~ 327 (720)
.....++..++.+.+-.+-+.. ++++....-.. ...+++.+ .++..
T Consensus 279 ~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~ 358 (442)
T KOG2759|consen 279 KKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENAD 358 (442)
T ss_pred HHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHH
Confidence 3334555555555554444322 34332222211 11122110 11222
Q ss_pred HHHh--cCChHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhc
Q 004992 328 HIVQ--RGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 404 (720)
Q Consensus 328 ~~~~--~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l 404 (720)
.+-+ ..++..|+++|+. .+|.+..-|+.=++...+ -.|+.+..+.+-|+-+.+.+++++++++|+..|+.++..|
T Consensus 359 rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr--~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 359 RLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVR--HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred HHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHH--hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 2332 2467889999976 558888889999999998 3788888899999999999999999999999999999887
Q ss_pred cc
Q 004992 405 AD 406 (720)
Q Consensus 405 ~~ 406 (720)
..
T Consensus 437 m~ 438 (442)
T KOG2759|consen 437 MV 438 (442)
T ss_pred Hh
Confidence 53
No 65
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=5.7e-07 Score=94.61 Aligned_cols=337 Identities=16% Similarity=0.199 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHH
Q 004992 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (720)
Q Consensus 52 ~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~ 131 (720)
.+.....|+.+++++.++.-. +-|..|++.|..+++ ++|..+... ++++|++.|+..-. |++
T Consensus 17 ~~s~aETI~kLcDRvessTL~-----eDRR~A~rgLKa~sr--kYR~~Vga~-Gmk~li~vL~~D~~----------D~E 78 (970)
T KOG0946|consen 17 QQSAAETIEKLCDRVESSTLL-----EDRRDAVRGLKAFSR--KYREEVGAQ-GMKPLIQVLQRDYM----------DPE 78 (970)
T ss_pred cccHHhHHHHHHHHHhhccch-----hhHHHHHHHHHHHHH--HHHHHHHHc-ccHHHHHHHhhccC----------CHH
Confidence 344566789999998887332 247888888888775 466666644 78999999987655 448
Q ss_pred HHHHHHHHHHHhc-cCh------h----------hHHHHH-HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhh
Q 004992 132 VEKGSAFALGLLA-VKP------E----------HQQLIV-DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA 193 (720)
Q Consensus 132 v~~~a~~~L~~L~-~~~------~----------~~~~~~-~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~ 193 (720)
+...++.++.++. .++ + +.+.++ ..+.|..++..+...+- .||..++..+.++.
T Consensus 79 ~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF--------~VR~~aIqLlsall 150 (970)
T KOG0946|consen 79 IIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF--------HVRLYAIQLLSALL 150 (970)
T ss_pred HHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch--------hhhhHHHHHHHHHH
Confidence 9999999999998 321 1 122222 35788899999887766 99999999999988
Q ss_pred hcCc-hhhHHHH-hcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC----CHHHHH
Q 004992 194 HENS-SIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE----DSAIHY 267 (720)
Q Consensus 194 ~~~~-~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~----~~~v~~ 267 (720)
...+ +.+..+. ..-+|..++.+|.+.-..+|-.++..|..++.+++..++.++=.+++..|..++..+ ..-|..
T Consensus 151 s~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVve 230 (970)
T KOG0946|consen 151 SCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVE 230 (970)
T ss_pred hcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 6444 3444443 346899999999999999999999999999997777777777667899999999764 236889
Q ss_pred HHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhcc---C-----ChHHHH-----HHHHHHHHHhccC------cchhhH
Q 004992 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS---C-----CSESQR-----EAALLLGQFAATD------SDCKVH 328 (720)
Q Consensus 268 ~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~---~-----~~~~~~-----~a~~~L~~l~~~~------~~~~~~ 328 (720)
.|+..|.||...+..++..+.+.+.+|.|..+|.. + .|..++ .++.++..+..-+ ..+...
T Consensus 231 DCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~ 310 (970)
T KOG0946|consen 231 DCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKA 310 (970)
T ss_pred HHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999977752 2 233322 3444555554211 123345
Q ss_pred HHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCC---------HH-HHHHHhcC-CChhHHH
Q 004992 329 IVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQVITDMHNQAGIAHNGG---------LV-PLLKLLDS-KNGSLQH 395 (720)
Q Consensus 329 ~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~---------i~-~l~~ll~~-~~~~v~~ 395 (720)
+...+++..|...+.++ ..+++..+.-++.++.. |+..++..+.+..+ +- .+..+..+ ..+..|.
T Consensus 311 l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVR--gn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRc 388 (970)
T KOG0946|consen 311 LVSSHLLDVLCTILMHPGVPADILTESIITVAEVVR--GNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRC 388 (970)
T ss_pred HHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHH--hchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHH
Confidence 66788999999988765 56899999999999998 56666666654321 11 12233333 4567888
Q ss_pred HHHHHHHhc-ccCCCchhHHHh
Q 004992 396 NAAFALYGL-ADNEDNVADFIR 416 (720)
Q Consensus 396 ~a~~~L~~l-~~~~~~~~~l~~ 416 (720)
++.+++..+ ..+......++.
T Consensus 389 Av~ycf~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 389 AVLYCFRSYLYDNDDGQRKFLK 410 (970)
T ss_pred HHHHHHHHHHhcchhhHHHHHH
Confidence 888888777 445666656554
No 66
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.89 E-value=9.2e-09 Score=98.18 Aligned_cols=140 Identities=26% Similarity=0.353 Sum_probs=118.0
Q ss_pred eEEehhHHHHhhcchhHhhcccCCcCCCC-CC---ceecCCCCHHHHHHHHHHHhcCCcccChhhHHHHHHHHhhhChH-
Q 004992 562 RRFYAHRICLLASSDAFRAMFDGGYREKD-AR---DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLE- 636 (720)
Q Consensus 562 ~~~~~h~~iL~~~s~~f~~~~~~~~~e~~-~~---~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~- 636 (720)
..+|||..+++ |.+||+.||.++|.|+. .. ...+|.....+++..++|+|+++.++.++-+.+++..|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 45999999998 88999999999999954 22 34556778899999999999999999999999999999999775
Q ss_pred --HHHHHHHHHHHhc---CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhhhcHHHH
Q 004992 637 --GLKRLCEYTIAQD---ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 702 (720)
Q Consensus 637 --~l~~~c~~~l~~~---i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~l 702 (720)
.|+......|++. ++.=++.+++..+.......|...+..|+..|+..+...|+|.+..+...+.+
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~~ri 450 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSVPRI 450 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhccchh
Confidence 2666666666554 34557899999999999999999999999999999999999998766554443
No 67
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.89 E-value=3.7e-08 Score=99.63 Aligned_cols=225 Identities=20% Similarity=0.236 Sum_probs=162.0
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCcchHHHHHH------cCChHHHHHhhccCChHHHHHHHHHHHHHhccC
Q 004992 251 LPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (720)
Q Consensus 251 l~~L~~ll~--~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 322 (720)
...++.+|+ +.++++.+.++..+..+....+...+.+.. ......++.++..+++-+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 445555554 458899999999999999888877666655 236788888888899999999999999998765
Q ss_pred cchhhHHHhcCChHHHHHHhcC----CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh-----c--CCCh
Q 004992 323 SDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL-----D--SKNG 391 (720)
Q Consensus 323 ~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll-----~--~~~~ 391 (720)
+....... .+.++.+++++.+ ++...+..|+.+|.++.. .++.|..+++.++++.+.+++ . ..+.
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~---~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR---SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT---SHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC---cchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 54444322 4567888888765 455677999999999999 899999999999999999999 2 3356
Q ss_pred hHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc-chhHHHH
Q 004992 392 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRR 470 (720)
Q Consensus 392 ~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-~~~v~~~ 470 (720)
.++..++.+++.|+-+++....+...+ +++.|+++++.. ...|.+.
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---------------------------------~i~~L~~i~~~~~KEKvvRv 259 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEIAEELNKKY---------------------------------LIPLLADILKDSIKEKVVRV 259 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTTS---------------------------------HHHHHHHHHHH--SHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhccc---------------------------------hHHHHHHHHHhcccchHHHH
Confidence 789999999999998877665555544 666777777765 5578888
Q ss_pred HHHHHHhhcCCcc--cchhhhccCcHHHHHHhhcC--CCchhhhhH
Q 004992 471 VALALAHLCSPDD--QRTIFIDGGGLELLLGLLGS--TNPKQQLDG 512 (720)
Q Consensus 471 a~~~L~~l~~~~~--~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a 512 (720)
++.+|.|+..... ....|+..|+++.+..|... .|+++....
T Consensus 260 ~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 260 SLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999988776 77778888888888888775 777776543
No 68
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=8.9e-07 Score=96.73 Aligned_cols=472 Identities=16% Similarity=0.100 Sum_probs=308.3
Q ss_pred cccchhcccchhhhccchhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHc
Q 004992 12 PERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELA 91 (720)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~ 91 (720)
..|+.+-.++.+.+ .+.. .+....+...+.......+.+..+.+.+.++.+... +...++..++..+...+
T Consensus 117 ~tr~~lipf~~e~~---~~~d-ev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~-----eet~vr~k~ve~l~~v~ 187 (759)
T KOG0211|consen 117 RTRLELIPFLTEAE---DDED-EVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATV-----EETGVREKAVESLLKVA 187 (759)
T ss_pred hhhhhhhhHHHHhc---cchh-HHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHH-----HHHHHHHHHHHHHHHHH
Confidence 33666666777655 3333 334455555666666677777777777777777665 45557888999888877
Q ss_pred c-Chh--hHHHHHhCCChHHHHHhhcCCCCc----------------------------ccccCCCcchHHHHHHHHHHH
Q 004992 92 K-NEE--VVNWIVEGGAVPALVKHLQAPPTS----------------------------EADRNLKPFEHEVEKGSAFAL 140 (720)
Q Consensus 92 ~-~~~--~~~~~~~~g~i~~L~~ll~~~~~~----------------------------~~~~~~~~~~~~v~~~a~~~L 140 (720)
. .++ .+..++ +.+.. +...++. ..+..++...+.+|..++.-+
T Consensus 188 ~~~~~~~~~~~lv-----~l~~~-l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l 261 (759)
T KOG0211|consen 188 VGLPKEKLREHLV-----PLLKR-LATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNL 261 (759)
T ss_pred HhcChHHHHHHHH-----HHHHH-ccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhh
Confidence 6 332 222221 11111 1111100 001123334457777777777
Q ss_pred HHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCC
Q 004992 141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (720)
Q Consensus 141 ~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (720)
++++ .-........+.++.+.++..+..+ .++..|...+.++..--..-. -....+.+.+++..++++
T Consensus 262 ~~~a--~~~~~~~~~s~v~~~~~~L~~Ddqd--------sVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~ 329 (759)
T KOG0211|consen 262 GNIA--KVLESEIVKSEVLPTLIQLLRDDQD--------SVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGS 329 (759)
T ss_pred HHHH--HHHHHHHHHhhccHHHhhhhhcchh--------hHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChh
Confidence 7777 2223355667889999999988877 899999888888774222110 122356788999999999
Q ss_pred HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-chHHHHHHcCChHHHHHh
Q 004992 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGL 299 (720)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~-~~~~~~~~~~~l~~L~~l 299 (720)
+.++.........+.. .-.. .......++....++++...+++..+..-...++..-. .....+.....++.+..+
T Consensus 330 ~~v~~~~~~~~~~L~~--~~~~-~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l 406 (759)
T KOG0211|consen 330 WRVSYMVADKFSELSS--AVGP-SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL 406 (759)
T ss_pred HHHHHHHhhhhhhHHH--Hhcc-ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH
Confidence 9999988888887774 1112 33344568888999999888888877777777753322 223445556678999999
Q ss_pred hccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCH
Q 004992 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGL 379 (720)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i 379 (720)
..+.+..++...+..+.++.-..+ ..-.-....|.++.++++..+.++....+.+..+-. -.+.....+.....+
T Consensus 407 v~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~--v~~v~g~~~~s~slL 481 (759)
T KOG0211|consen 407 VLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE--VNDVIGISTVSNSLL 481 (759)
T ss_pred HhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh--ccCcccchhhhhhhh
Confidence 999999998888877777653222 111123467888889999999999999988866655 133344566677788
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhh-hhhhhHHHHHHHHHHHHHhh-----hhhhH
Q 004992 380 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEKI-----HGRVL 453 (720)
Q Consensus 380 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~-~~~~~~~~~~~~~~~l~~~~-----~~~~~ 453 (720)
+.+..+....+++++....+.+..++.... ..+.....-+.+..+.. .....+.-++.++..+...+ ....+
T Consensus 482 p~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i 559 (759)
T KOG0211|consen 482 PAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEI 559 (759)
T ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhh
Confidence 888888888899999999999998876432 22333222222222211 13344444555555554443 33567
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 454 NHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 454 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
+.++....+++.-+|...+.++..++.-.... +.....+|.+..+..+++++||..+++.|..+...
T Consensus 560 ~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e--i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 560 PKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE--ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred HHHHHHhcCcccchhhHHHHHHHHHHHHhccH--HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 77777777777888988888888765433322 33556689999999999999999999999988764
No 69
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=5e-08 Score=98.56 Aligned_cols=357 Identities=15% Similarity=0.135 Sum_probs=228.1
Q ss_pred CCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 103 ~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
.+.+++.+..+.+.+. .+|..|+..|.|++.............+...+.++..+++. .+
T Consensus 83 ~~iv~Pv~~cf~D~d~------------~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~--------~V- 141 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDS------------QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ--------NV- 141 (675)
T ss_pred HHhhHHHHHhccCccc------------eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc--------cc-
Confidence 4578899999988888 89999999999999221111111223344555555555544 22
Q ss_pred HHHHHHHHHhhhcCchhhH-HHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHH-hCCCHHHHHHhhcC
Q 004992 183 RRAADAITNLAHENSSIKT-RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRS 260 (720)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~l~~L~~ll~~ 260 (720)
+.++..+-.+..+-..-+. .+.-.+++|.|-.-+...++..|.....-|..|-. ....+.+. -..+++.|...|.+
T Consensus 142 ~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds--~P~~~m~~yl~~~ldGLf~~LsD 219 (675)
T KOG0212|consen 142 RGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS--VPDLEMISYLPSLLDGLFNMLSD 219 (675)
T ss_pred ccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCcHHHHhcchHHHHHHHHHhcC
Confidence 3355555555542211111 23334566666666667789999988888887764 23333332 24578889999999
Q ss_pred CCHHHHHHHHHHHHHhhc---CCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHH
Q 004992 261 EDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (720)
Q Consensus 261 ~~~~v~~~a~~~L~nL~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 337 (720)
++++||..+=.+++++.. +.|.. +-....++.++.-++++++.++..|...+..+..-.+.. ....-.|++..
T Consensus 220 ~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~ 295 (675)
T KOG0212|consen 220 SSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTA 295 (675)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhh
Confidence 999999777776666642 22221 122457888999999999999999988888876533222 22334577777
Q ss_pred HHHHhcCCCHH-HHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHh
Q 004992 338 LIEMLQSPDVQ-LREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 416 (720)
Q Consensus 338 L~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 416 (720)
++.++.+.++. +++.+...=..+....+.......+--...++.+.+.+.+...+.+..++.-+..|-...++.-
T Consensus 296 iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql---- 371 (675)
T KOG0212|consen 296 ILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL---- 371 (675)
T ss_pred cccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh----
Confidence 88888776553 5544443322232211133333332223457788888899999999999988887765443311
Q ss_pred hcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHH
Q 004992 417 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL 496 (720)
Q Consensus 417 ~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 496 (720)
......+...|+.-+.+++.+|...++..+.++|.+.+.... ...+..
T Consensus 372 -----------------------------~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~s 419 (675)
T KOG0212|consen 372 -----------------------------LVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLS 419 (675)
T ss_pred -----------------------------hhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHH
Confidence 122345778899999999999999999999999998775411 123445
Q ss_pred HHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 497 LLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 497 L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
|.++......-+..++.-.+.+|+..
T Consensus 420 LL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 420 LLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 55555555555777787777777754
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.9e-06 Score=88.98 Aligned_cols=404 Identities=18% Similarity=0.194 Sum_probs=221.8
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHH
Q 004992 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (720)
Q Consensus 62 ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (720)
+...|+++++.+ +..+.-.|+.+|++++..+-.|. ..|-+-++++..++ -+|..|+.+..
T Consensus 108 ltNslknDL~s~--nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~~------------~irKKA~Lca~ 167 (866)
T KOG1062|consen 108 LTNSLKNDLNSS--NQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRDP------------YIRKKAALCAV 167 (866)
T ss_pred HHHHHHhhccCC--CeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCCH------------HHHHHHHHHHH
Confidence 455566666554 66678889999998886433222 45667788888776 89999999999
Q ss_pred Hhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc---
Q 004992 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--- 217 (720)
Q Consensus 142 ~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--- 217 (720)
.+. ..|+.-. .+++...++|.+.+. -|...++..+..+|..++..-..+.+ .++.++..|+
T Consensus 168 r~irK~P~l~e-----~f~~~~~~lL~ek~h--------GVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~ 232 (866)
T KOG1062|consen 168 RFIRKVPDLVE-----HFVIAFRKLLCEKHH--------GVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLT 232 (866)
T ss_pred HHHHcCchHHH-----HhhHHHHHHHhhcCC--------ceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHh
Confidence 998 7777643 356777888877766 67777888888888766654444433 5555555553
Q ss_pred ------------CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCCcc
Q 004992 218 ------------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPN 282 (720)
Q Consensus 218 ------------~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~---~~~v~~~a~~~L~nL~~~~~~ 282 (720)
-++|-++...++.|+-|..++++..+.+.+ ++..+..-..+. ...+..+++.++..+- .+..
T Consensus 233 ~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~GnAILYE~V~TI~~I~-~~~~ 309 (866)
T KOG1062|consen 233 NSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAGNAILYECVRTIMDIR-SNSG 309 (866)
T ss_pred cCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccchhHHHHHHHHHHHhcc-CCch
Confidence 135788888999999888866555444432 122222111111 1245556666666662 2222
Q ss_pred hHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
.+.. ++..|-.+|.+.+..+|.-++..|..+...++...+.- =..++++|+++|..++..|+..+..|..
T Consensus 310 Lrvl-----ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 310 LRVL-----AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred HHHH-----HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 2211 34555556666666666666666666654433332211 2456677777777777777777777665
Q ss_pred hhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc--CCCchhHHHhhcccccccchhhhhhhhHHHHHHH
Q 004992 363 VITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 440 (720)
Q Consensus 363 ~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~ 440 (720)
. .|-.. .+..|+..|.+.++..+.....-+..++. .|+++..+-...-|-... +.+...-....+...
T Consensus 380 ---~-~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~a-G~~V~~dv~~nll~L 449 (866)
T KOG1062|consen 380 ---E-SNVRV-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTA-GDFVNDDVVNNLLRL 449 (866)
T ss_pred ---c-ccHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc-ccccchhhHHHHHHH
Confidence 1 11111 24556666666677777766666666654 233332221110000000 000000000000000
Q ss_pred HHH----HHHhhhhhhHHHHHH--HHHhcchhHHHHHHHHHHhhcC---C---cccchhhhccCcHHHHHHhhcC--CCc
Q 004992 441 LKR----LEEKIHGRVLNHLLY--LMRVAEKGVQRRVALALAHLCS---P---DDQRTIFIDGGGLELLLGLLGS--TNP 506 (720)
Q Consensus 441 ~~~----l~~~~~~~~~~~L~~--ll~~~~~~v~~~a~~~L~~l~~---~---~~~~~~~~~~~~~~~L~~ll~~--~~~ 506 (720)
+.+ .........+..+.. ++.-+.+.+...+.|+|+.... + .+......+..++..|..++.+ .+.
T Consensus 450 Ia~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~ 529 (866)
T KOG1062|consen 450 IANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDS 529 (866)
T ss_pred HhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchH
Confidence 000 000000011111111 1112334456667777776541 1 1122233456678888887765 456
Q ss_pred hhhhhHHHHHHHHHhhc
Q 004992 507 KQQLDGAVALFKLANKA 523 (720)
Q Consensus 507 ~v~~~a~~aL~~L~~~~ 523 (720)
.++.+|..|+..|+..-
T Consensus 530 ~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 530 TTKGYALTALLKLSSRF 546 (866)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 69999999999999754
No 71
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=4.2e-08 Score=105.67 Aligned_cols=265 Identities=16% Similarity=0.119 Sum_probs=207.8
Q ss_pred hhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCC
Q 004992 38 EISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAP 116 (720)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~ 116 (720)
++.+|.-.++.+.+.......+|-.++.|.+. .-|..|+..|+.... ++........-|+.|..++||+++
T Consensus 453 QLTAFevWLd~gse~r~PPeQLPiVLQVLLSQ--------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~ 524 (1387)
T KOG1517|consen 453 QLTAFEVWLDYGSESRTPPEQLPIVLQVLLSQ--------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS 524 (1387)
T ss_pred HHHHHHHHHHhccccCCChHhcchHHHHHHHH--------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc
Confidence 34455444555555555666677777777664 258999999999988 798888888999999999999998
Q ss_pred CCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhc
Q 004992 117 PTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE 195 (720)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 195 (720)
.. ++|-.-+.+-++|. -++.++..++..++-..+++.|..+..-+ .|-+..|+.+|+.++.+
T Consensus 525 a~------------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~-----~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 525 AR------------ELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIP-----PEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hH------------hhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCC-----HHHHHHHHHHHHHHHcc
Confidence 77 78877777777777 77999999999999999999888742211 27888999999999998
Q ss_pred CchhhHHHHhcCCcHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 004992 196 NSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG 274 (720)
Q Consensus 196 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~ 274 (720)
....++...+.+.+...+..+.++ .+-++..++-+|+.|-.+.+..+-.=.+.++...|+.+|.++-++||..|+.+|+
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 887888888888999999999885 6889999999999999988888888888899999999999999999999999999
Q ss_pred HhhcCC----cchHHHH-----------HHcCCh----HHHHHhhccCChHHHHHHHHHHHHHhccCcchhh
Q 004992 275 NLVHSS----PNIKKEV-----------LAAGAL----QPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (720)
Q Consensus 275 nL~~~~----~~~~~~~-----------~~~~~l----~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (720)
.+.... ++....+ .....+ -.++.+++++++-++.+.+-+|..+..+......
T Consensus 668 tfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~ 739 (1387)
T KOG1517|consen 668 TFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLK 739 (1387)
T ss_pred HHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhH
Confidence 997541 2211111 011222 2667777888888999988888888765544433
No 72
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.84 E-value=3.5e-06 Score=85.61 Aligned_cols=432 Identities=17% Similarity=0.096 Sum_probs=252.2
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCC----ChHHHHHhhcCCCCcccccCCCcchHHHHHHHH
Q 004992 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGG----AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (720)
Q Consensus 62 ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g----~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~ 137 (720)
++-.+...-...+.+..+|..|+.+|.+-+.. .+..+-..+ .+...++.-+.++. +++..+.
T Consensus 177 il~aiv~ga~k~et~~avRLaaL~aL~dsl~f--v~~nf~~E~erNy~mqvvceatq~~d~------------e~q~aaf 242 (858)
T COG5215 177 ILFAIVMGALKNETTSAVRLAALKALMDSLMF--VQGNFCYEEERNYFMQVVCEATQGNDE------------ELQHAAF 242 (858)
T ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHH--HHHhhcchhhhchhheeeehhccCCcH------------HHHHHHH
Confidence 33333443344456777999999998873321 111111111 22334444444444 8999999
Q ss_pred HHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHH-------------
Q 004992 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV------------- 203 (720)
Q Consensus 138 ~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~------------- 203 (720)
.+|.++. -...+-+...+...-......+++.++ ++...++.....+|...-+.....
T Consensus 243 gCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd--------~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 243 GCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND--------EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--------HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 9999988 444444455555555666677777777 899999988888885221111111
Q ss_pred ---HhcCCcHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHH
Q 004992 204 ---RMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI 273 (720)
Q Consensus 204 ---~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L 273 (720)
...+++|.|+.+|.. .++.+..+|..+|--.+. .....+.+. ++.-+-.-+++++-.-|+.++.++
T Consensus 315 a~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAf 390 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---LKGDKIMRP-VLGFVEQNIRSESWANREAAVMAF 390 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---HhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHh
Confidence 112478889999854 236677777777766663 222333333 333333456778888899999999
Q ss_pred HHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHH-hc--CCCHHHH
Q 004992 274 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-LQ--SPDVQLR 350 (720)
Q Consensus 274 ~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~--~~~~~v~ 350 (720)
+.+-.+....+..-+-...+|.+...+.++..-++..++|+++.++.. ....+-..+-++..++. +. .+.+.+.
T Consensus 391 GSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~vsa~liGl~D~p~~~ 467 (858)
T COG5215 391 GSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEVSASLIGLMDCPFRS 467 (858)
T ss_pred hhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccHHHHHHHhhhhccchHH
Confidence 999766555555555677899999999988777889999999999852 22222223333333332 21 2467888
Q ss_pred HHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh------cCCChhHHHHHHHHHHhcccC-CCchhHHHhhcccc--
Q 004992 351 EMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL------DSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQ-- 421 (720)
Q Consensus 351 ~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll------~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~v~-- 421 (720)
.++.|..-|++.+.....+...-.-....+.++.-| ...+...|..+..+|..|... ++....+.. |...
T Consensus 468 ~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a-~~~~~~ 546 (858)
T COG5215 468 INCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA-GFYDYT 546 (858)
T ss_pred hhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHH
Confidence 899999999998442211111111112333333332 123455666666777666432 222222211 1111
Q ss_pred --cccc-----h--h--hhhhhhHHHHHHHHHHHHHh----------hhhhhHHHHHHHHHhcchhH-HHHHHHHHHhhc
Q 004992 422 --KLQD-----G--E--FIVQATKDCVAKTLKRLEEK----------IHGRVLNHLLYLMRVAEKGV-QRRVALALAHLC 479 (720)
Q Consensus 422 --~L~~-----~--~--~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~L~~ll~~~~~~v-~~~a~~~L~~l~ 479 (720)
+|.. + . .......+...+.+..+..+ ....++.-+++++.+.++.+ -.....++++|+
T Consensus 547 ~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~ 626 (858)
T COG5215 547 SKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALS 626 (858)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHH
Confidence 0000 0 0 00001112222222222222 23447888888888875543 445666788887
Q ss_pred CCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 480 SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 480 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.+-+.+....-...+|-|.+-++..+..+-..|...+..|+...
T Consensus 627 ~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 627 TSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 77666666667788999998888788888888888888888643
No 73
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.84 E-value=2.8e-07 Score=91.02 Aligned_cols=280 Identities=21% Similarity=0.244 Sum_probs=205.4
Q ss_pred hHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccc
Q 004992 96 VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCS 175 (720)
Q Consensus 96 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~ 175 (720)
.++.+...|++..|+.++..++... .||..|.+.|..+.. .++++.+...| +..++.+-+.....
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et----------~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~--- 236 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLET----------SVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPV--- 236 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhH----------HHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcH---
Confidence 3456777899999999999987732 689999999988773 34566666666 77777777665554
Q ss_pred hhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhcc-CChhcHHHHHhCCCHHHH
Q 004992 176 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVECNALPTL 254 (720)
Q Consensus 176 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~i~~~g~l~~L 254 (720)
+..+..+.+|.++..++++....++..|++..++..++..++.+.+.++.+|+|++- +....+..+++..+-..|
T Consensus 237 ----e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWL 312 (832)
T KOG3678|consen 237 ----ELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWL 312 (832)
T ss_pred ----HHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhh
Confidence 888999999999999888888889999999999999999999999999999999985 445677788888888889
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCC
Q 004992 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (720)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 334 (720)
..+..+.+.-.|..|+-+++.|+.. .+....+..+|.+..+-.++.+-++.. ++....+..+ -....-
T Consensus 313 F~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQ-G~~~d~ 380 (832)
T KOG3678|consen 313 FPLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQ-GRGPDD 380 (832)
T ss_pred hhhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhc-cCChHH
Confidence 8888888888999999999999754 566677777887766666665544422 1111000000 001234
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchh-hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC
Q 004992 335 VRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 407 (720)
Q Consensus 335 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (720)
++.|+.+|.++.-+.+..++.-++.=+.+. ..+++ ..+-+-|+++.|-++..+++..-...|-.+|.-|...
T Consensus 381 LqRLvPlLdS~R~EAq~i~AF~l~~EAaIK-s~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 381 LQRLVPLLDSNRLEAQCIGAFYLCAEAAIK-SLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHhhhhhhcchhhhhhhHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 678888888766666655555554333321 22333 3456678899999999988887777788888877653
No 74
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=5e-07 Score=91.59 Aligned_cols=322 Identities=15% Similarity=0.117 Sum_probs=214.8
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (720)
..+.+++++..+.+.+. .++-.||..|.|++..... ........+...+.++..+.+..++. ++..+-.+
T Consensus 82 ~~~iv~Pv~~cf~D~d~--------~vRyyACEsLYNiaKv~k~-~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRL 151 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDS--------QVRYYACESLYNIAKVAKG-EVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRL 151 (675)
T ss_pred HHHhhHHHHHhccCccc--------eeeeHhHHHHHHHHHHhcc-CcccchHHHHHHHHHHhcCCcccccc-HHHHHHHH
Confidence 35678999999988877 8999999999999963221 11122223445566666777766664 44444444
Q ss_pred ccCChhcHH-HHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHH
Q 004992 235 AFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (720)
Q Consensus 235 ~~~~~~~~~-~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~ 313 (720)
..+-..... .+.-.+++|.|-..+...++..|...+.-|..|-. .|...-.-.-..+++.|..+|.+++.++|..+-.
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t 230 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDT 230 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHH
Confidence 421111111 22223456666666667799999988888888843 3443222223567889999999999999977766
Q ss_pred HHHHHhc---cCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCC
Q 004992 314 LLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKN 390 (720)
Q Consensus 314 ~L~~l~~---~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~ 390 (720)
++.++-. .++... --...++.++.-+.++++.++..|+.-+..+.. -........-+|++..++.++.+..
T Consensus 231 ~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~---i~g~~~l~~~s~il~~iLpc~s~~e 304 (675)
T KOG0212|consen 231 LLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK---IPGRDLLLYLSGILTAILPCLSDTE 304 (675)
T ss_pred HHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhc---CCCcchhhhhhhhhhhcccCCCCCc
Confidence 6665532 122221 224578899999999999999999888888887 3333344445666777777776554
Q ss_pred h-hHHHHHHH---HHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchh
Q 004992 391 G-SLQHNAAF---ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG 466 (720)
Q Consensus 391 ~-~v~~~a~~---~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~ 466 (720)
+ .++..+.. .+..+...+..... ++ -+.++..+.+.+.+...+
T Consensus 305 ~~~i~~~a~~~n~~l~~l~s~~~~~~~-id--------------------------------~~~ii~vl~~~l~~~~~~ 351 (675)
T KOG0212|consen 305 EMSIKEYAQMVNGLLLKLVSSERLKEE-ID--------------------------------YGSIIEVLTKYLSDDREE 351 (675)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhccc-cc--------------------------------hHHHHHHHHHHhhcchHH
Confidence 4 34333322 23333332222111 11 124777888999999999
Q ss_pred HHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhcccc
Q 004992 467 VQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL 526 (720)
Q Consensus 467 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~~~~ 526 (720)
.|..++.-+..+-....++-.......-+.|..-+++++.+|-..+...+++++.+..+.
T Consensus 352 tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 352 TRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP 411 (675)
T ss_pred HHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc
Confidence 999999999999877777777777778899999999999999999999999999876543
No 75
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.1e-06 Score=83.20 Aligned_cols=308 Identities=14% Similarity=0.130 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhc----HHHHHhCCCHHHHHH
Q 004992 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN----KNQIVECNALPTLIL 256 (720)
Q Consensus 181 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~----~~~i~~~g~l~~L~~ 256 (720)
-...++.+|-.|....+.. -......+.|..-|..++..|+..+|..+..+..+.+.+ ...+++.++++.++.
T Consensus 59 kttlcVscLERLfkakega---hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklild 135 (524)
T KOG4413|consen 59 KTTLCVSCLERLFKAKEGA---HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILD 135 (524)
T ss_pred hhhhHHHHHHHHHhhccch---hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHH
Confidence 3344667777766533221 122345566666677888999999999999998766633 334457899999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChH--HHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCC
Q 004992 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ--PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (720)
Q Consensus 257 ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~--~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 334 (720)
.+..++.+|.+.|...+..++.. +..-..+..+..++ .+.++....+.-.|......+..+.+.++.........|+
T Consensus 136 cIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGL 214 (524)
T KOG4413|consen 136 CIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGL 214 (524)
T ss_pred HHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhH
Confidence 99999999999999999999755 44445666666654 3445555566778888888898888877887778888999
Q ss_pred hHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcC--CChhHHHHHHHHHHhcccCCCch
Q 004992 335 VRPLIEMLQS-PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNEDNV 411 (720)
Q Consensus 335 ~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~ 411 (720)
+..|..-|+. .+.-++..++.....|+. ....+..+.+.|.++.+.+.+.. .+|--...++.....+..+. +.
T Consensus 215 ldlLeaElkGteDtLVianciElvteLae---teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgke-ai 290 (524)
T KOG4413|consen 215 LDLLEAELKGTEDTLVIANCIELVTELAE---TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKE-AI 290 (524)
T ss_pred HHHHHHHhcCCcceeehhhHHHHHHHHHH---HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcch-HH
Confidence 9999888877 778889999999999998 77788888889999999998843 33433333454444443321 11
Q ss_pred hHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhcc
Q 004992 412 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG 491 (720)
Q Consensus 412 ~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 491 (720)
..+.+....+ .+. -.+....+++...+|..+..|..+++.+-++.++...+...
T Consensus 291 mdvseeaice---------------------ali-----iaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkT 344 (524)
T KOG4413|consen 291 MDVSEEAICE---------------------ALI-----IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKT 344 (524)
T ss_pred hhcCHHHHHH---------------------HHH-----HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhcc
Confidence 1111111111 110 13445667888899999999999999999888888776655
Q ss_pred CcHHHHHHhh---cC-CCchhhhhHHHHHHHHHhhc
Q 004992 492 GGLELLLGLL---GS-TNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 492 ~~~~~L~~ll---~~-~~~~v~~~a~~aL~~L~~~~ 523 (720)
|- |....++ -+ +-..-++.+..+|.+++...
T Consensus 345 gp-paaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 345 GP-PAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred CC-hHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 53 3333332 23 33347788889999988653
No 76
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.78 E-value=2.2e-06 Score=89.53 Aligned_cols=254 Identities=15% Similarity=0.086 Sum_probs=161.3
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCcch--HHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcC
Q 004992 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNI--KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (720)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~nL~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 333 (720)
..|++..+.+|.+++.+++.++..-... .+.+...| -.|.+.|....+++.-..+.+|..+...-.-.+..-=-.+
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d 883 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD 883 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence 3445666777888887777776321111 11222222 2366667777788887777777777642111111111247
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcch--hhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCch
Q 004992 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHN--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 411 (720)
Q Consensus 334 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 411 (720)
++|.|...|++...+++++++..++.++. ++++. ...|+. +...|+++|.+.+..+|++|..+++.++..-...
T Consensus 884 llPrltPILknrheKVqen~IdLvg~Iad--rgpE~v~aREWMR--IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq 959 (1172)
T KOG0213|consen 884 LLPRLTPILKNRHEKVQENCIDLVGTIAD--RGPEYVSAREWMR--ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ 959 (1172)
T ss_pred hcccchHhhhhhHHHHHHHHHHHHHHHHh--cCcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH
Confidence 89999999999999999999999999998 34442 334443 4566888999999999999999999998643222
Q ss_pred hHHHhhcccccccch-hhhhhhhHHHHHHHHHHHHHh-hhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc--cchh
Q 004992 412 ADFIRVGGVQKLQDG-EFIVQATKDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTI 487 (720)
Q Consensus 412 ~~l~~~~~v~~L~~~-~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~ 487 (720)
. ++..|.+. ...-...+-|.+-++....+. ..-.++|.|+.=.+.++.+||...+++++.+-..-- ....
T Consensus 960 d------VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdY 1033 (1172)
T KOG0213|consen 960 D------VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDY 1033 (1172)
T ss_pred H------HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhH
Confidence 1 22222221 111223334433333222222 133467777777778899999999999988854321 2221
Q ss_pred hhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 488 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 488 ~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
-....|.|...+.+.|+-.|.-|..++..|+-..
T Consensus 1034 --iyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1034 --IYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred --HHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 1234688888888999999999999998888654
No 77
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.3e-06 Score=88.73 Aligned_cols=345 Identities=17% Similarity=0.130 Sum_probs=217.0
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (720)
.++.++.-+..++. .+|+....+|..+....+.. ......+.+.+++..... .-+..
T Consensus 97 ~~~~~~~~~~tps~------------~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~--------~~~~~ 153 (569)
T KOG1242|consen 97 IIEILLEELDTPSK------------SVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKI--------AERAG 153 (569)
T ss_pred HHHHHHHhcCCCcH------------HHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccH--------HHHhh
Confidence 56777777777777 89999998888777111111 112245666677764433 66677
Q ss_pred HHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHH-HHHHHHHhccCChhcHHHHHhCCC---HHHHHHhhcC
Q 004992 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA-AAGALRTLAFKNDENKNQIVECNA---LPTLILMLRS 260 (720)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~-a~~~L~~L~~~~~~~~~~i~~~g~---l~~L~~ll~~ 260 (720)
+.+.+..+..+.. -..+.+.+++..+.....+.....++. ++.+....+. +-. ...+..+ +|.++.-+.+
T Consensus 154 aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~-~Lg---~~~EPyiv~~lp~il~~~~d 227 (569)
T KOG1242|consen 154 AAYGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG-NLG---PPFEPYIVPILPSILTNFGD 227 (569)
T ss_pred hhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH-hcC---CCCCchHHhhHHHHHHHhhc
Confidence 8888888876433 234566788888988888766544443 3222222221 000 1112333 4455555556
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHH
Q 004992 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (720)
Q Consensus 261 ~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 340 (720)
..+.||..+..+...+...-+...- .-+++.++.-+....|+.+..++..++.++.. ...........++|.+.+
T Consensus 228 ~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~-ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 228 KINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADC-APKQLSLCLPDLIPVLSE 302 (569)
T ss_pred cchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh-chHHHHHHHhHhhHHHHH
Confidence 7788988887777766533232211 12455555555555899999999999988753 344444556779999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhccc
Q 004992 341 MLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 420 (720)
Q Consensus 341 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v 420 (720)
.|.+..+++|+++..++.+++.. .+|.. + ...++.+++.+.++...+.. +...|..-+ .|
T Consensus 303 vl~DT~~evr~a~~~~l~~~~sv---idN~d-I--~~~ip~Lld~l~dp~~~~~e-~~~~L~~tt-------------FV 362 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSV---IDNPD-I--QKIIPTLLDALADPSCYTPE-CLDSLGATT-------------FV 362 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHh---hccHH-H--HHHHHHHHHHhcCcccchHH-HHHhhccee-------------ee
Confidence 99999999999999999999983 33332 1 23577788888776644333 222222211 00
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccch--hhhccCcHHHHH
Q 004992 421 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRT--IFIDGGGLELLL 498 (720)
Q Consensus 421 ~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~L~ 498 (720)
..... + .-.-+++.|.+-+...+..++..++.++.|+|.--+... ...-...+|.|.
T Consensus 363 ~~V~~------p---------------sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk 421 (569)
T KOG1242|consen 363 AEVDA------P---------------SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK 421 (569)
T ss_pred eeecc------h---------------hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence 00000 0 001145556666777788999999999999987553222 122234567777
Q ss_pred HhhcCCCchhhhhHHHHHHHHHhhcc
Q 004992 499 GLLGSTNPKQQLDGAVALFKLANKAT 524 (720)
Q Consensus 499 ~ll~~~~~~v~~~a~~aL~~L~~~~~ 524 (720)
..+.+..|++|..++++|..+.++..
T Consensus 422 ~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 422 ENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999888653
No 78
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.76 E-value=4.6e-06 Score=89.62 Aligned_cols=419 Identities=18% Similarity=0.183 Sum_probs=233.0
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC--hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~ 134 (720)
..+.-.++.|... +.|.++++.|+.+++.+... +.....+ ...++.+++-|++. -.|.
T Consensus 568 ~m~~~tl~rL~a~----d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~nE--------------iTRl 627 (1233)
T KOG1824|consen 568 TMYDCTLQRLKAT----DSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLGNE--------------ITRL 627 (1233)
T ss_pred HHHHHHHHHHhcc----cccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHhch--------------hHHH
Confidence 3333444555554 78899999999999887663 2211111 23566666666543 4678
Q ss_pred HHHHHHHHhccChhhHH-HHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHH
Q 004992 135 GSAFALGLLAVKPEHQQ-LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (720)
Q Consensus 135 ~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (720)
.|++++..++..+-.-. .-.-..+++.+...++.... .++...+.++-.|.......-..-.-..++..+.
T Consensus 628 ~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r--------~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~ 699 (1233)
T KOG1824|consen 628 TAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQR--------ALRLATLTALDKLVKNYSDSIPAELLEAVLVELP 699 (1233)
T ss_pred HHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhh
Confidence 89999999994432211 22224568888888887665 5666666666655542211111111122344455
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHH---c
Q 004992 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA---A 290 (720)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~---~ 290 (720)
.++...+-.+-..|..+|..+....+..--. ....+++.++.+++++-. +-.++.++.++- +.++. .
T Consensus 700 ~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~-~~~~iL~~ii~ll~Spll--qg~al~~~l~~f-------~alV~t~~~ 769 (1233)
T KOG1824|consen 700 PLISESDLHVTQLAVAFLTTLAIIQPSSLLK-ISNPILDEIIRLLRSPLL--QGGALSALLLFF-------QALVITKEP 769 (1233)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccHHHHH-HhhhhHHHHHHHhhCccc--cchHHHHHHHHH-------HHHHhcCCC
Confidence 5666777888888999999888754444333 334589999999987643 222333333321 11111 1
Q ss_pred CC-hHHHHHhhccCC-----hHHHHHHHHHH----HHHhccCcchhhHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHH
Q 004992 291 GA-LQPVIGLLSSCC-----SESQREAALLL----GQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALG 358 (720)
Q Consensus 291 ~~-l~~L~~ll~~~~-----~~~~~~a~~~L----~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~ 358 (720)
+. ...++.++..+- ..+.++|...+ ..++...++... .....++.-+.+ .+..++.-|.-.|+
T Consensus 770 ~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~-----s~a~kl~~~~~s~~s~~~ikvfa~LslG 844 (1233)
T KOG1824|consen 770 DLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSK-----SLATKLIQDLQSPKSSDSIKVFALLSLG 844 (1233)
T ss_pred CccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccch-----hHHHHHHHHHhCCCCchhHHHHHHhhhh
Confidence 11 344555555431 12333433333 333322221111 122333333332 45567777777777
Q ss_pred HHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc-C-CCchhHHHhhcccccccchhhhhhhh---
Q 004992 359 RLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-N-EDNVADFIRVGGVQKLQDGEFIVQAT--- 433 (720)
Q Consensus 359 ~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~-~-~~~~~~l~~~~~v~~L~~~~~~~~~~--- 433 (720)
.+..+. ......+.-..+++.+++++.+++.+|..+|++++. + +.....+.+. ....-.+..+..++.
T Consensus 845 Elgr~~------~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~q-i~sqpk~QyLLLhSlkev 917 (1233)
T KOG1824|consen 845 ELGRRK------DLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQ-IESQPKRQYLLLHSLKEV 917 (1233)
T ss_pred hhccCC------CCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHH-HhcchHhHHHHHHHHHHH
Confidence 666511 111223344568889999999999999999999975 3 2222222221 110000000000111
Q ss_pred -------------------------------HHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCc
Q 004992 434 -------------------------------KDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 434 -------------------------------~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 482 (720)
+..+...+-.+.-+-....+++|-..+.++.+..|..++.++.....+.
T Consensus 918 i~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~ 997 (1233)
T KOG1824|consen 918 IVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQ 997 (1233)
T ss_pred HHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCC
Confidence 1111112222222335567777777788888887777777766554444
Q ss_pred ccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhccc
Q 004992 483 DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 525 (720)
Q Consensus 483 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~~~ 525 (720)
...--......+..+..+++++|.+||..|..++-..+++.++
T Consensus 998 p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 998 PQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred CCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence 3222233445577888999999999999999999988887643
No 79
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.73 E-value=3.5e-07 Score=92.50 Aligned_cols=214 Identities=17% Similarity=0.262 Sum_probs=152.8
Q ss_pred hHHHHHHHHHHHHHHccC-hhhHHHHHh------CCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cCh
Q 004992 76 DRAAAKRATHVLAELAKN-EEVVNWIVE------GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP 147 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~~-~~~~~~~~~------~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~ 147 (720)
+.++....+..+..+..+ +.....+.. .....++++++..++. .++..++.+|+.+. ..+
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~------------~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDS------------FIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSH------------HHHHHHHHHHHHHHTSTT
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHcCC
Confidence 445788899999998884 655555554 2367888888887766 89999999999999 333
Q ss_pred hhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh-----c--CCC
Q 004992 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-----E--FTD 220 (720)
Q Consensus 148 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-----~--~~~ 220 (720)
..... ...+.++.+++.+++.... ...+++..++.+|.++.. .+..|..+.+.++++.+..++ . ..+
T Consensus 138 ~~~~~-~~~~~l~~ll~~L~~~l~~----~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 138 KRSEK-LVKEALPKLLQWLSSQLSS----SDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp T--HH-HHHHHHHHHHHHHH-TT-H----HHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred ccccc-hHHHHHHHHHHHHHHhhcC----CCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence 33222 2245678888888763321 112677899999999997 888999999999999999999 2 234
Q ss_pred HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcc-hHHHHHHcCChHHHHH
Q 004992 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIG 298 (720)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~-~~~~~~~~~~l~~L~~ 298 (720)
..++..++-+++.|+. +++....+.+.++++.|+.+++. ..+.|.+-++.++.|+....+. ....++..|+++.+-.
T Consensus 212 ~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~ 290 (312)
T PF03224_consen 212 IQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQN 290 (312)
T ss_dssp HHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHH
Confidence 7899999999999997 78888888888899999999986 4668889999999999866554 6677777777776666
Q ss_pred hhccC--ChHHH
Q 004992 299 LLSSC--CSESQ 308 (720)
Q Consensus 299 ll~~~--~~~~~ 308 (720)
+.... ++++.
T Consensus 291 L~~rk~~Dedl~ 302 (312)
T PF03224_consen 291 LSERKWSDEDLT 302 (312)
T ss_dssp HHSS--SSHHHH
T ss_pred HhcCCCCCHHHH
Confidence 65432 44443
No 80
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=9.7e-07 Score=83.09 Aligned_cols=298 Identities=16% Similarity=0.142 Sum_probs=194.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHH
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~ 288 (720)
..++.++.+.++.|+..|...+.+++.. ..+.... +...++.+..++.+..+ .+.|+.++.|++.. +..++.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 4578899999999999999999999963 2222222 23468889999988777 67788999999865 56667777
Q ss_pred HcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHh------cCChHHHHHHhcCC-C-HHHHHHHHHHHHHH
Q 004992 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVRPLIEMLQSP-D-VQLREMSAFALGRL 360 (720)
Q Consensus 289 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~~~~L~~ll~~~-~-~~v~~~a~~~L~~l 360 (720)
+. ++..++..+.+..+......+..+.|++..+......... .|++.........+ + ..--...+..+.|+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 66 8899999999998889999999999999755444333222 33444444444332 1 12344566778888
Q ss_pred hhhhcCcchhhhhhhcCCHHH-HHHHhcCCChhHH-HHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHH
Q 004992 361 AQVITDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQ-HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA 438 (720)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~i~~-l~~ll~~~~~~v~-~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~ 438 (720)
++ ....|..+.....++. .+.-+.+.+..+| ...+.+|.|+|-+......++.. .+..|.......-...
T Consensus 160 s~---~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e-~~~lLp~iLlPlagpe---- 231 (353)
T KOG2973|consen 160 SQ---FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDE-SINLLPAILLPLAGPE---- 231 (353)
T ss_pred hh---hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcc-hHHHHHHHHhhcCCcc----
Confidence 88 6777777766653221 2222233444554 46788999988766665555542 1221111000000000
Q ss_pred HHHHHHHHhhhhhhHHHHHHHH-----HhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcC-CCchhhhhH
Q 004992 439 KTLKRLEEKIHGRVLNHLLYLM-----RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDG 512 (720)
Q Consensus 439 ~~~~~l~~~~~~~~~~~L~~ll-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a 512 (720)
.+++--.. -+|.=++++ ++++|.+|..-+.+|..||....++..+...|+-|.+..+-.. ++++++..+
T Consensus 232 ----e~sEEdm~-~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ac 306 (353)
T KOG2973|consen 232 ----ELSEEDMA-KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREAC 306 (353)
T ss_pred ----ccCHHHHh-cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHH
Confidence 00000000 111112333 3468999999999999999999999999999999999998876 777788777
Q ss_pred HHHHHHHHhhcccc
Q 004992 513 AVALFKLANKATTL 526 (720)
Q Consensus 513 ~~aL~~L~~~~~~~ 526 (720)
-.....|.+..+..
T Consensus 307 e~vvq~Lv~~e~~~ 320 (353)
T KOG2973|consen 307 EQVVQMLVRLEPEI 320 (353)
T ss_pred HHHHHHHHhccccc
Confidence 77777777655433
No 81
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.71 E-value=1.2e-05 Score=81.78 Aligned_cols=429 Identities=12% Similarity=0.029 Sum_probs=253.8
Q ss_pred chHHhHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhh
Q 004992 72 WLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH 149 (720)
Q Consensus 72 ~~~~d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~ 149 (720)
+..+|.+++..|..+|..+.. .-+.-....+.-........+++++. +|..++...-..+| ..-+.
T Consensus 230 tq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd------------~va~qavEfWsticeEeid~ 297 (858)
T COG5215 230 TQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND------------EVAIQAVEFWSTICEEEIDG 297 (858)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch------------HHHHHHHHHHHHHHHHHhhh
Confidence 344677788888888888766 22222233333333444566777777 89999998887888 22111
Q ss_pred HHHH----------------HHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHH
Q 004992 150 QQLI----------------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (720)
Q Consensus 150 ~~~~----------------~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (720)
--.. ...+++|.|+++|.....++ ...+|.+-..|..||.-++.... ..+.. .++..+-
T Consensus 298 ~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~-~~DdWn~smaA~sCLqlfaq~~g---d~i~~-pVl~FvE 372 (858)
T COG5215 298 EMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDY-YGDDWNPSMAASSCLQLFAQLKG---DKIMR-PVLGFVE 372 (858)
T ss_pred HHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCc-cccccchhhhHHHHHHHHHHHhh---hHhHH-HHHHHHH
Confidence 1111 11347899999998755433 34567888888888887775221 22222 2444555
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCCh
Q 004992 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (720)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l 293 (720)
+-++++++.-++.+..+++.+..+.......-.-..++|.+...+.++...++..++|+++.++.+.+ ..+--.|-+
T Consensus 373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl 449 (858)
T COG5215 373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHL 449 (858)
T ss_pred HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccc
Confidence 56778899999999999999997554443333334589999999998888999999999999974432 222234444
Q ss_pred HHHHHhhc---cCChHHHHHHHHHHHHHhccCcchh---hHHHh---cCChHHHHHHh--cCCCHHHHHHHHHHHHHHhh
Q 004992 294 QPVIGLLS---SCCSESQREAALLLGQFAATDSDCK---VHIVQ---RGAVRPLIEML--QSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 294 ~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~---~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l~~ 362 (720)
+..++... .+.+.+..+++|...|++..-.+.. ..+.. ..++..|++.- ..++...|..+..+|+.|..
T Consensus 450 ~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 450 VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 43333322 2357788899999999975322221 11111 11222333221 34677889999999998887
Q ss_pred hhcCcchhhhhhhcCCHHHH-------HH----HhcCC----ChhHHHHHHHHHHhcccC-CCchhHHHh---hcccccc
Q 004992 363 VITDMHNQAGIAHNGGLVPL-------LK----LLDSK----NGSLQHNAAFALYGLADN-EDNVADFIR---VGGVQKL 423 (720)
Q Consensus 363 ~~~~~~~~~~l~~~~~i~~l-------~~----ll~~~----~~~v~~~a~~~L~~l~~~-~~~~~~l~~---~~~v~~L 423 (720)
. .++.-..+. .|+.... +. .+... ..+++.+-+..|..+.+. +...+..-+ .-.++.|
T Consensus 530 ~--~~d~V~~~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~l 606 (858)
T COG5215 530 I--CPDAVSDIL-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRIL 606 (858)
T ss_pred h--cchhHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 3 222221111 1111111 11 11111 245677777777776442 222222111 1111111
Q ss_pred cchhh-----hhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHH
Q 004992 424 QDGEF-----IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 498 (720)
Q Consensus 424 ~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~ 498 (720)
.+... .....-..+.+.+..-.+..-+.++|.|.+-++..+..+...|++.++.|+..-...........+..|+
T Consensus 607 es~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~Lv 686 (858)
T COG5215 607 ESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLV 686 (858)
T ss_pred hccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11100 0000011122233334455677799999999988899999999999999988766555555666788999
Q ss_pred HhhcC--CCchhhhhHHHHHHHHHhhc
Q 004992 499 GLLGS--TNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 499 ~ll~~--~~~~v~~~a~~aL~~L~~~~ 523 (720)
+.+++ .+.+++-....++.-++...
T Consensus 687 Q~lss~~~~R~lKPaiLSvFgDIAlai 713 (858)
T COG5215 687 QCLSSEATHRDLKPAILSVFGDIALAI 713 (858)
T ss_pred HHhcChhhccccchHHHHHHHHHHHHH
Confidence 99987 44567777777777776543
No 82
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.2e-05 Score=74.49 Aligned_cols=338 Identities=14% Similarity=0.125 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHhc-cCh--hhH--HHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHh
Q 004992 131 EVEKGSAFALGLLA-VKP--EHQ--QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (720)
Q Consensus 131 ~v~~~a~~~L~~L~-~~~--~~~--~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 205 (720)
.|+..++..++.+. +.. ... ..++..++++.++..+-..++ ++-..|...+..++. .+..-..+..
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd--------eVAkAAiesikrial-fpaaleaiFe 167 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD--------EVAKAAIESIKRIAL-FPAALEAIFE 167 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHh-cHHHHHHhcc
Confidence 78888998888888 333 222 234477899999999988777 999999999999987 3444444555
Q ss_pred cCCcHH--HHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcc
Q 004992 206 EGGIPP--LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN 282 (720)
Q Consensus 206 ~~~i~~--L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~ 282 (720)
...... +..+.-..+.-+|..++..+..+..-++........+|.+..|..-|+. ++.-|+..++.....|+.. ..
T Consensus 168 SellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eH 246 (524)
T KOG4413|consen 168 SELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EH 246 (524)
T ss_pred cccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hh
Confidence 544432 3344444566677788888888887778888888889999999888877 5667888899999999744 45
Q ss_pred hHHHHHHcCChHHHHHhhccCC--hHHHHHHHHHHHHHhccCcchhhHHHhc-------CChHHHHHHhcCCCHHHHHHH
Q 004992 283 IKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIVQR-------GAVRPLIEMLQSPDVQLREMS 353 (720)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~~~~~L~~ll~~~~~~v~~~a 353 (720)
.++.+.+.|+++.+.+++...+ |--.-.++.....+.. ......+.+. -.+...++++..++++.++.|
T Consensus 247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffg--keaimdvseeaicealiiaidgsfEmiEmnDpdaieaA 324 (524)
T KOG4413|consen 247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG--KEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAA 324 (524)
T ss_pred hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc--chHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHH
Confidence 5677788999999999987543 3222223333333321 1111111111 133445566678899999999
Q ss_pred HHHHHHHhhhhcCcchhhhhhhcCC--HHHHHH-HhcCCChhHHHHHHHHHHhcccCCCchh-HHHhhcccccccchhhh
Q 004992 354 AFALGRLAQVITDMHNQAGIAHNGG--LVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVA-DFIRVGGVQKLQDGEFI 429 (720)
Q Consensus 354 ~~~L~~l~~~~~~~~~~~~l~~~~~--i~~l~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~l~~~~~v~~L~~~~~~ 429 (720)
+.+++.+.. ..+....+.+.|- ...++. ..+.....-+..++.+|.+++..-.... .+.+......+.-..+
T Consensus 325 iDalGilGS---nteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif- 400 (524)
T KOG4413|consen 325 IDALGILGS---NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF- 400 (524)
T ss_pred HHHHHhccC---CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH-
Confidence 999999988 5566555555443 223332 2233333456678888888875322111 1111111111111000
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhh-hccCcHHH
Q 004992 430 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF-IDGGGLEL 496 (720)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~ 496 (720)
......+.-.-..-+...++.+.|+++..+.+++..++..+-..+.+ -..+.+..
T Consensus 401 ------------daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefiei 456 (524)
T KOG4413|consen 401 ------------DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEI 456 (524)
T ss_pred ------------HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceee
Confidence 11111112234455666778889999999999999999888755443 33344433
No 83
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=3.9e-05 Score=80.49 Aligned_cols=218 Identities=14% Similarity=0.154 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHH
Q 004992 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (720)
Q Consensus 55 ~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~ 133 (720)
.....|++++.|... |+.++-.|+.+++.++. +|++--. .-|.+..+|-+.+.+ .+.
T Consensus 179 lr~~FprL~EkLeDp------Dp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNN-----------WmL 236 (877)
T KOG1059|consen 179 LRPCFPRLVEKLEDP------DPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNN-----------WVL 236 (877)
T ss_pred HhhhHHHHHHhccCC------CchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCC-----------eeh
Confidence 333455555555443 77789999999999998 5765333 347788888655442 467
Q ss_pred HHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHH--HhhhcCchhhHHHHhcCCcH
Q 004992 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT--NLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 134 ~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~--~l~~~~~~~~~~~~~~~~i~ 210 (720)
...+..+++|+ -.|..+.. .+++|.+++.+.... .+.-.++.++. +++.+.+.+...+ .-+++
T Consensus 237 IKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~Am-------SLlYECvNTVVa~s~s~g~~d~~asi--qLCvq 302 (877)
T KOG1059|consen 237 IKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAM-------SLLYECVNTVVAVSMSSGMSDHSASI--QLCVQ 302 (877)
T ss_pred HHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHH-------HHHHHHHHHheeehhccCCCCcHHHH--HHHHH
Confidence 78888999999 77777655 568888888765432 33333433332 2333332222221 12567
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHc
Q 004992 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (720)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~ 290 (720)
.|-.++.+.|+.++.-++-+++.+...++... .. --..+++.|.+.++.+|..|+..|.-+.. ..+...
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~V---qa--~kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl~e---- 371 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV---QA--HKDLILRCLDDKDESIRLRALDLLYGMVS--KKNLME---- 371 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH---HH--hHHHHHHHhccCCchhHHHHHHHHHHHhh--hhhHHH----
Confidence 77788899999999999999999996554432 22 25678899999999999999999998853 222233
Q ss_pred CChHHHHHhhccCC-hHHHHHHHHHHHHHhc
Q 004992 291 GALQPVIGLLSSCC-SESQREAALLLGQFAA 320 (720)
Q Consensus 291 ~~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~ 320 (720)
++..|+.-+...+ ...|-+.+.-+..+|+
T Consensus 372 -IVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 372 -IVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred -HHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 2344554444333 2455555555555554
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.59 E-value=1.2e-05 Score=82.97 Aligned_cols=242 Identities=15% Similarity=0.045 Sum_probs=161.5
Q ss_pred ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 004992 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (720)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (720)
+++.++..|....+. ++...++..+.. ...+ ..+..|+..+.+.++.++..+..+|..+-.
T Consensus 55 a~~~L~~aL~~d~~~-------ev~~~aa~al~~--~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~- 115 (410)
T TIGR02270 55 ATELLVSALAEADEP-------GRVACAALALLA--QEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG- 115 (410)
T ss_pred HHHHHHHHHhhCCCh-------hHHHHHHHHHhc--cCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-
Confidence 467777777544332 555544444321 1111 126788888888888888888888886653
Q ss_pred ChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHH
Q 004992 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (720)
Q Consensus 238 ~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (720)
.+..+.|+.+++++++.++..++.++.... ....+.+..++++.++.++..++.+|+.
T Consensus 116 ----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 116 ----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGE 173 (410)
T ss_pred ----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 456778888888888888877776666531 1234567777888888888888888888
Q ss_pred HhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHH
Q 004992 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA 397 (720)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a 397 (720)
+-. ...++.|...+.+.++.||..|+.++..+.. ...+..+..+...........+
T Consensus 174 l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------------~~A~~~l~~~~~~~g~~~~~~l 229 (410)
T TIGR02270 174 LPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-------------RLAWGVCRRFQVLEGGPHRQRL 229 (410)
T ss_pred hcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-------------HhHHHHHHHHHhccCccHHHHH
Confidence 743 2345667777888888888888888866543 1234455554444444443333
Q ss_pred HHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHh
Q 004992 398 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 477 (720)
Q Consensus 398 ~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 477 (720)
..++... .. ...+..|..+++++. ++..++.+|+.
T Consensus 230 ~~~lal~-~~------------------------------------------~~a~~~L~~ll~d~~--vr~~a~~AlG~ 264 (410)
T TIGR02270 230 LVLLAVA-GG------------------------------------------PDAQAWLRELLQAAA--TRREALRAVGL 264 (410)
T ss_pred HHHHHhC-Cc------------------------------------------hhHHHHHHHHhcChh--hHHHHHHHHHH
Confidence 3333332 11 125667888887755 89999999987
Q ss_pred hcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHh
Q 004992 478 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~ 521 (720)
+- ....++.|+..+.++. ++..|..++..+.-
T Consensus 265 lg----------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 265 VG----------DVEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred cC----------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 73 3356888998888655 99999999999885
No 85
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=8.6e-06 Score=84.61 Aligned_cols=333 Identities=17% Similarity=0.112 Sum_probs=196.5
Q ss_pred hhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHH
Q 004992 29 DEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPA 108 (720)
Q Consensus 29 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~ 108 (720)
+..++-+||..+..+................+.+.+.+... +...+..++..+..+..+... ..+.+.+.+..
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~------~~~~~~~aa~~~ag~v~g~~i-~~~~~~~~l~~ 178 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTST------KIAERAGAAYGLAGLVNGLGI-ESLKEFGFLDN 178 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccc------cHHHHhhhhHHHHHHHcCcHH-hhhhhhhHHHH
Confidence 44556667776665544443333333444444444444422 333577788888877775332 34556778888
Q ss_pred HHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHH
Q 004992 109 LVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA 186 (720)
Q Consensus 109 L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~ 186 (720)
|...+.+.... .-|+.+.-+....+ -++. .+.+.++.+-.++....+.. ..++..|.
T Consensus 179 l~~ai~dk~~~-----------~~re~~~~a~~~~~~~Lg~~-----~EPyiv~~lp~il~~~~d~~-----~~Vr~Aa~ 237 (569)
T KOG1242|consen 179 LSKAIIDKKSA-----------LNREAALLAFEAAQGNLGPP-----FEPYIVPILPSILTNFGDKI-----NKVREAAV 237 (569)
T ss_pred HHHHhcccchh-----------hcHHHHHHHHHHHHHhcCCC-----CCchHHhhHHHHHHHhhccc-----hhhhHHHH
Confidence 88888776552 23332333332222 1111 12334555555554432211 17888877
Q ss_pred HHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHH
Q 004992 187 DAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266 (720)
Q Consensus 187 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~ 266 (720)
.+...+...-+... -...+|.++.-+....+.....++..++.++...+....... ..++|.+...|.+.++++|
T Consensus 238 ~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr 312 (569)
T KOG1242|consen 238 EAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVR 312 (569)
T ss_pred HHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHH
Confidence 77776664332211 112445555555455788888999999999875555544444 4599999999999999999
Q ss_pred HHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhc----CChHHHHHHh
Q 004992 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR----GAVRPLIEML 342 (720)
Q Consensus 267 ~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----~~~~~L~~ll 342 (720)
+.+..++.+++.-.++. . -...+|.|++.+.++...+. ++.-.|..-+ .. ..++. -++|.|..-+
T Consensus 313 ~a~~~~l~~~~svidN~-d---I~~~ip~Lld~l~dp~~~~~-e~~~~L~~tt-----FV-~~V~~psLalmvpiL~R~l 381 (569)
T KOG1242|consen 313 KAGIETLLKFGSVIDNP-D---IQKIIPTLLDALADPSCYTP-ECLDSLGATT-----FV-AEVDAPSLALMVPILKRGL 381 (569)
T ss_pred HHHHHHHHHHHHhhccH-H---HHHHHHHHHHHhcCcccchH-HHHHhhccee-----ee-eeecchhHHHHHHHHHHHH
Confidence 99999999997432221 1 12367889998887653332 2222222221 11 11111 2356666666
Q ss_pred cCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 343 QSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
...+..+++.++..+.|++....++..-..+. ...+|.+-..+.+..|++|..+.++|+.+-+
T Consensus 382 ~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 382 AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred hhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 77888899999999999998332221111111 2345555566667789999999999977754
No 86
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=3e-06 Score=91.95 Aligned_cols=223 Identities=14% Similarity=0.134 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcH
Q 004992 132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 132 v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (720)
-|..|+..|+... -.|-.-.....-|+.|.++++|.++.. |++-.-+.+-..+..-++.++..+++.++-.
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~--------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~ 557 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR--------ELRPILVFIWAKILAVDPSCQADLVKENGYK 557 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH--------hhhhhHHHHHHHHHhcCchhHHHHHhccCce
Confidence 3566888888887 566666666778999999999998877 8888888888887777888888899998888
Q ss_pred HHHHhhcC-C--CHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcchHHH
Q 004992 211 PLVELLEF-T--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE 286 (720)
Q Consensus 211 ~L~~ll~~-~--~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~nL~~~~~~~~~~ 286 (720)
.+++.|.+ . +++-|..|+-+|+.++.+.+.+++...+.+++...+..|.++ .+-+|.+++-+|+.|..+.+..+-.
T Consensus 558 YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~ 637 (1387)
T KOG1517|consen 558 YFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS 637 (1387)
T ss_pred eEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc
Confidence 88888876 2 368899999999999998888899999999999999999985 6889999999999999888887777
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccC----cchhhH-----------HHhcCCh----HHHHHHhcCCCH
Q 004992 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD----SDCKVH-----------IVQRGAV----RPLIEMLQSPDV 347 (720)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~~-----------~~~~~~~----~~L~~ll~~~~~ 347 (720)
-...+....|+.+|.++-+++|.+|+.+|+.+..+. ++.... ..-++.+ ..++.++++.++
T Consensus 638 G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsp 717 (1387)
T KOG1517|consen 638 GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSP 717 (1387)
T ss_pred cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccch
Confidence 778889999999999999999999999999887642 111111 1011222 356677788999
Q ss_pred HHHHHHHHHHHHHhh
Q 004992 348 QLREMSAFALGRLAQ 362 (720)
Q Consensus 348 ~v~~~a~~~L~~l~~ 362 (720)
-++.+.+-+|..++.
T Consensus 718 lvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 718 LVRTEVVVALSHFVV 732 (1387)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998887
No 87
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.50 E-value=1.8e-05 Score=83.02 Aligned_cols=325 Identities=16% Similarity=0.140 Sum_probs=193.7
Q ss_pred hHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHH--HHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ--LIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 106 i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~--~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
+..++..|.+.+. .+|.+|+..++.|+ --..+.+ .+...| -.|...|....+ |+.
T Consensus 801 ~stiL~rLnnksa------------~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeyp--------EvL 858 (1172)
T KOG0213|consen 801 CSTILWRLNNKSA------------KVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYP--------EVL 858 (1172)
T ss_pred HHHHHHHhcCCCh------------hHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccH--------HHH
Confidence 3445666777777 89999999999998 2112211 111122 234455555444 777
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcH--HHHHhCCCHHHHHHhhcC
Q 004992 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIVECNALPTLILMLRS 260 (720)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~i~~~g~l~~L~~ll~~ 260 (720)
-..+.++..++......+..--..+.+|.|..+|++....|+.++...+..++...++.. ..-. .+---|+.+|++
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM--RIcfeLlelLka 936 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM--RICFELLELLKA 936 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHHHHH
Confidence 777777777664332111111124789999999999999999999999999996444421 1111 123346778888
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHH
Q 004992 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (720)
Q Consensus 261 ~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 340 (720)
.+.++|..|..+++.++.- +--+.++..|++-|+..+-..|....-+++-++..+..+ .++|.|+.
T Consensus 937 hkK~iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmn 1002 (1172)
T KOG0213|consen 937 HKKEIRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMN 1002 (1172)
T ss_pred HHHHHHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHh
Confidence 8999999999999999632 111234555555555443334444444444444322111 35677777
Q ss_pred HhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhccc
Q 004992 341 MLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 420 (720)
Q Consensus 341 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v 420 (720)
--+.++..++.-.+.+++.+-+.. +...+..+. ...|.|.+.+.+.+...|..|..++.+|+.+.... ..+ ++.
T Consensus 1003 eYrtPe~nVQnGVLkalsf~Feyi-gemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~--g~e-da~ 1076 (1172)
T KOG0213|consen 1003 EYRTPEANVQNGVLKALSFMFEYI-GEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGT--GCE-DAL 1076 (1172)
T ss_pred hccCchhHHHHhHHHHHHHHHHHH-HHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCc--CcH-HHH
Confidence 777788899999999998887733 122233332 35677888889999999999999999998764321 111 111
Q ss_pred ccccc----hh-----hhhhhhHHHHHHHHHHHHHh-hhhhhHHHHHHHHHhcchhHHHHHHHHHHhh
Q 004992 421 QKLQD----GE-----FIVQATKDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHL 478 (720)
Q Consensus 421 ~~L~~----~~-----~~~~~~~~~~~~~~~~l~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 478 (720)
-.|.+ .. -..+...+|+ ..+... ....++..+++-+-++...||..-..++-++
T Consensus 1077 iHLLN~iWpNIle~sPhviqa~~e~~----eg~r~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1077 IHLLNLIWPNILETSPHVIQAFDEAM----EGLRVALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred HHHHHHhhhhhcCCChHHHHHHHHHH----HHHHHHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhH
Confidence 11111 00 0111222222 222222 2344666666677777777777666665554
No 88
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=9.3e-05 Score=78.52 Aligned_cols=359 Identities=16% Similarity=0.121 Sum_probs=228.8
Q ss_pred HHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHH
Q 004992 108 ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD 187 (720)
Q Consensus 108 ~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~ 187 (720)
-|.++|.+.... ..+++.-++++-++.+.+. +...|.+++.....+. ++++..--
T Consensus 39 dL~~lLdSnkd~-----------~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~--------EVKkLVyv 93 (968)
T KOG1060|consen 39 DLKQLLDSNKDS-----------LKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNI--------EVKKLVYV 93 (968)
T ss_pred HHHHHHhccccH-----------HHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCH--------HHHHHHHH
Confidence 466788776551 3444444555555655443 3356788888877766 88888877
Q ss_pred HHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHH
Q 004992 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267 (720)
Q Consensus 188 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~ 267 (720)
-|...+...+... .--|..+.+-|+++|+.+|..|+++|..+=. + ++..=++-.+-+...+..+.||+
T Consensus 94 YLlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRv--p-----~IaPI~llAIk~~~~D~s~yVRk 161 (968)
T KOG1060|consen 94 YLLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRV--P-----MIAPIMLLAIKKAVTDPSPYVRK 161 (968)
T ss_pred HHHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--h-----hHHHHHHHHHHHHhcCCcHHHHH
Confidence 7888787555432 1246889999999999999999998886653 1 11111233344556788999999
Q ss_pred HHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCH
Q 004992 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347 (720)
Q Consensus 268 ~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 347 (720)
.|+.+|-.|-...++... .++..+-.+|.+.++.+.-.|+.+.-.+|. +....+ ++-...++.++.+-+.
T Consensus 162 ~AA~AIpKLYsLd~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evCP---erldLI--HknyrklC~ll~dvde 231 (968)
T KOG1060|consen 162 TAAHAIPKLYSLDPEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRLLPDVDE 231 (968)
T ss_pred HHHHhhHHHhcCChhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhhccchhh
Confidence 999999999766565443 356778888899999999999888888863 333322 2335777788877666
Q ss_pred HHHHHHHHHHHHHhhhhcCcchh--hhh--------------------hhcCCHHHHH----HHhcCCChhHHHHHHHHH
Q 004992 348 QLREMSAFALGRLAQVITDMHNQ--AGI--------------------AHNGGLVPLL----KLLDSKNGSLQHNAAFAL 401 (720)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~~~~~--~~l--------------------~~~~~i~~l~----~ll~~~~~~v~~~a~~~L 401 (720)
--+...+..|...|.+.-..... ... ....-+..|+ -++.+.++.+..+++.+.
T Consensus 232 WgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~ 311 (968)
T KOG1060|consen 232 WGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLF 311 (968)
T ss_pred hhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHH
Confidence 66677777777776621111100 000 1111122233 366788999999999999
Q ss_pred HhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHH------------------------------------HHHHHH
Q 004992 402 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------------------------------------TLKRLE 445 (720)
Q Consensus 402 ~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~------------------------------------~~~~l~ 445 (720)
+.++-..+ ...+ ++.|++.....+..+..+.. .+.++.
T Consensus 312 y~lAP~~~--~~~i----~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La 385 (968)
T KOG1060|consen 312 YHLAPKNQ--VTKI----AKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLA 385 (968)
T ss_pred HhhCCHHH--HHHH----HHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHh
Confidence 99985321 1111 11222211111111111111 111111
Q ss_pred Hh-hhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 446 EK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 446 ~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.. -.+.+++-+...+++.+..+-..++.+|+.++.... -+...++.-|+.++++.+.-|...+...+..|.+..
T Consensus 386 ~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 386 NESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred hhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 11 134577778888888888888888999999876533 234566888999999999999999999999988754
No 89
>PF05536 Neurochondrin: Neurochondrin
Probab=98.45 E-value=0.00031 Score=75.94 Aligned_cols=201 Identities=14% Similarity=0.157 Sum_probs=140.9
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-h---hhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHH
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E---EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~---~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~ 133 (720)
.+.+.+..|... + | .-|..++-.+.++..+ + ..++.+.+.=+.+.|-++|.++..+.. ......+
T Consensus 6 ~l~~c~~lL~~~----~-D-~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~-----~~~~~~~ 74 (543)
T PF05536_consen 6 SLEKCLSLLKSA----D-D-TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSD-----CPPEEYL 74 (543)
T ss_pred HHHHHHHHhccC----C-c-HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCC-----CCHHHHH
Confidence 355566666665 2 3 3688889999998884 3 234456677678899999988654211 1223788
Q ss_pred HHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHH
Q 004992 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (720)
Q Consensus 134 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (720)
..|+.+|+.+|..|+....-.-.+-||.|++++....+. ++...+..+|..++. .+..+..+...|.++.|.
T Consensus 75 ~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~-------~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ 146 (543)
T PF05536_consen 75 SLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDL-------ETVDDALQCLLAIAS-SPEGAKALLESGAVPALC 146 (543)
T ss_pred HHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCch-------hHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHH
Confidence 889999999998777754333345699999999887663 888999999999995 788888999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHh-----CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 004992 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-----CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (720)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~-----~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~ 280 (720)
+.+.+ .+.....++.++.+++.... .+...+ ..+++.+...+.......+-.++..|.++-...
T Consensus 147 ei~~~-~~~~~E~Al~lL~~Lls~~~--~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 147 EIIPN-QSFQMEIALNLLLNLLSRLG--QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHh-CcchHHHHHHHHHHHHHhcc--hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 99887 55677888888888875322 111111 124555555555555566666777777776444
No 90
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=7.7e-05 Score=70.63 Aligned_cols=272 Identities=18% Similarity=0.160 Sum_probs=173.7
Q ss_pred HHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH-HcCChHHHHHHHhccCCCccchhhhHHHHHH
Q 004992 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV-DNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (720)
Q Consensus 107 ~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a 185 (720)
..++.++.+.++ .|+..|...+..++.. ..+.... ....++.+.+++++... .+.|
T Consensus 6 ~elv~ll~~~sP------------~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~----------~~~a 62 (353)
T KOG2973|consen 6 VELVELLHSLSP------------PVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP----------AEPA 62 (353)
T ss_pred HHHHHHhccCCh------------HHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc----------ccHH
Confidence 346778887777 8999999999999844 2222211 23467778888887654 2568
Q ss_pred HHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHh------CCCHHHHHHhhc
Q 004992 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE------CNALPTLILMLR 259 (720)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~------~g~l~~L~~ll~ 259 (720)
+.+|.|++. ++..++.+... ++..++..+.++....-...|..|.|++.++......... .|.+........
T Consensus 63 ~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d 140 (353)
T KOG2973|consen 63 ATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCD 140 (353)
T ss_pred HHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhC
Confidence 999999998 66677766665 7788888888887778888999999999855444333322 444555555554
Q ss_pred CCCH--HHHHHHHHHHHHhhcCCcchHHHHHHcCChH--HHHHhhccCChHHHH-HHHHHHHHHhccCcchhhHHHhc--
Q 004992 260 SEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ--PVIGLLSSCCSESQR-EAALLLGQFAATDSDCKVHIVQR-- 332 (720)
Q Consensus 260 ~~~~--~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~--~L~~ll~~~~~~~~~-~a~~~L~~l~~~~~~~~~~~~~~-- 332 (720)
.+.. .--...+.++.||+.. +..+..+.....++ .++. +.+.+..+|+ ..+.+|.|+|. +......+...
T Consensus 141 ~~~n~~a~f~ylA~vf~nls~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cF-d~~~h~~lL~e~~ 217 (353)
T KOG2973|consen 141 KSYNAYAEFHYLAPVFANLSQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCF-DAKLHEVLLDESI 217 (353)
T ss_pred cccccccchhHHHHHHHHHhhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhc-cchhHHHHhcchH
Confidence 4322 2234556788888654 44455555444222 2222 2333444444 46788888875 33333333331
Q ss_pred CChHHHH---------------------HHhc-----CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh
Q 004992 333 GAVRPLI---------------------EMLQ-----SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL 386 (720)
Q Consensus 333 ~~~~~L~---------------------~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll 386 (720)
.++|.++ +++. ++++.+|..-+.+|..|+. ....|..+.+.|+.+.+-.+-
T Consensus 218 ~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca---T~~GRe~lR~kgvYpilRElh 294 (353)
T KOG2973|consen 218 NLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA---TRAGREVLRSKGVYPILRELH 294 (353)
T ss_pred HHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh---hhHhHHHHHhcCchHHHHHHh
Confidence 2222222 2331 4788999999999999998 777888887777766555544
Q ss_pred -cCCChhHHHHHHHHHHhcccCCC
Q 004992 387 -DSKNGSLQHNAAFALYGLADNED 409 (720)
Q Consensus 387 -~~~~~~v~~~a~~~L~~l~~~~~ 409 (720)
...++.++..+-.....+.+..+
T Consensus 295 k~e~ded~~~ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 295 KWEEDEDIREACEQVVQMLVRLEP 318 (353)
T ss_pred cCCCcHHHHHHHHHHHHHHHhccc
Confidence 34677888777777666665433
No 91
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.43 E-value=0.00017 Score=73.79 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=171.0
Q ss_pred cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC--CCHH
Q 004992 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTK 222 (720)
Q Consensus 145 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~ 222 (720)
.+|..+....-....+.+..++-+++. +++..+.+++..+.. ++..-..+...+.--.++.-|.. .+..
T Consensus 13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~--------~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 13 RHPTLKYDLVLSFFGERIQCMLLSDSK--------EVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred hCchhhhhhhHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 556555555555555666654444444 999999999999988 44444556666665556665543 3466
Q ss_pred HHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhcc
Q 004992 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (720)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~ 302 (720)
-|+.|++.++.+.. -+.+.+. ...|++..++.+..++++..+..|+.+|+.++..+|. .+..+|++..+++.+.+
T Consensus 84 ER~QALkliR~~l~-~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 84 EREQALKLIRAFLE-IKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHH-hcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh
Confidence 78899999988885 2222222 2456899999999999999999999999999988774 56789999999999998
Q ss_pred CChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCC-------CH--HHHHHHHHHHHHHhhhhcCcchhhhh
Q 004992 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-------DV--QLREMSAFALGRLAQVITDMHNQAGI 373 (720)
Q Consensus 303 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~~~l 373 (720)
+..++....+.++..+. +.+..+..+...--+..++.-+.+. +. +.-..+..++..+.. .=.+--.+
T Consensus 159 ~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr---sW~GLl~l 234 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR---SWPGLLYL 234 (371)
T ss_pred ccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh---cCCceeee
Confidence 77778888888888886 3566666555433455555554332 22 344555666666665 21221222
Q ss_pred hhc--CCHHHHHHHhcCCChhHHHHHHHHHHhcccC
Q 004992 374 AHN--GGLVPLLKLLDSKNGSLQHNAAFALYGLADN 407 (720)
Q Consensus 374 ~~~--~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (720)
... .++..++..+..+++++|...+..+..+.+-
T Consensus 235 ~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 235 SMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred ecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 222 5788999999999999999999999998763
No 92
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.43 E-value=9.5e-05 Score=79.95 Aligned_cols=434 Identities=15% Similarity=0.106 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHH
Q 004992 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (720)
Q Consensus 54 ~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v 132 (720)
.....++.++..+...++.++-. .+..+...|..+... |+....-. ...+|.+...|.+.+.. ...
T Consensus 428 ~L~~~~~~iVkai~~qlr~ks~k--t~~~cf~lL~eli~~lp~~l~~~~-~slvpgI~~~l~DkSss----------s~~ 494 (1233)
T KOG1824|consen 428 MLSDQVPLIVKAIQKQLREKSVK--TRQGCFLLLTELINVLPGALAQHI-PSLVPGIIYSLNDKSSS----------SNL 494 (1233)
T ss_pred HHHhhhHHHHHHHHHHHhhcccc--chhhHHHHHHHHHHhCcchhhhcc-cccchhhhhhcCCccch----------HHH
Confidence 34555666666666655433222 455566666665552 33211111 23566666666655441 156
Q ss_pred HHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhH--HHHhc--
Q 004992 133 EKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT--RVRME-- 206 (720)
Q Consensus 133 ~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~-- 206 (720)
+..++..+.++. ..|+.-.. ......++++....++.. .+-..|+.+...++.--.+... .+-..
T Consensus 495 ki~~L~fl~~~L~s~~p~~fhp-~~~~Ls~~v~~aV~d~fy--------KisaEAL~v~~~lvkvirpl~~~~~~d~~~~ 565 (1233)
T KOG1824|consen 495 KIDALVFLYSALISHPPEVFHP-HLSALSPPVVAAVGDPFY--------KISAEALLVCQQLVKVIRPLQPPSSFDASPY 565 (1233)
T ss_pred HHHHHHHHHHHHhcCChhhccc-chhhhhhHHHHHhcCchH--------hhhHHHHHHHHHHHHHhcccCCCccCCCChh
Confidence 666776666655 33332111 111233344444444433 5555566666666631111100 00000
Q ss_pred --CCcHHHHHhhc--CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 004992 207 --GGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (720)
Q Consensus 207 --~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~ 282 (720)
..+...++.|+ +.|.+|++.|..+++.+...-.+.-.... ...++.+++-++ ++-.|..|++++..++.+.-.
T Consensus 566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL-~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL-PRTLPILLERLG--NEITRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHh--chhHHHHHHHHHHHHHhccce
Confidence 11223334443 45799999999999988752222211111 224666666664 455788889999999866444
Q ss_pred hHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
+...-.-..+++.+.+.+.......+.....++-.+..........-.-.-++..+..++...+-.+-..|+.+|+.++.
T Consensus 643 i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 43333344577888888877666777777777776664433333222222345566666777788888999999999988
Q ss_pred hhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcc----c-CCCchh--HHHhh--cccccccc-hh--hhh
Q 004992 363 VITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA----D-NEDNVA--DFIRV--GGVQKLQD-GE--FIV 430 (720)
Q Consensus 363 ~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~----~-~~~~~~--~l~~~--~~v~~L~~-~~--~~~ 430 (720)
.......-....+++.++.++.++ .++..++.++.++. . ..++.. .+... +-+..-.. +. ...
T Consensus 723 ---~~ps~l~~~~~~iL~~ii~ll~Sp--llqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~ 797 (1233)
T KOG1824|consen 723 ---IQPSSLLKISNPILDEIIRLLRSP--LLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAY 797 (1233)
T ss_pred ---cccHHHHHHhhhhHHHHHHHhhCc--cccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHH
Confidence 444444455567788899999764 44445554444432 1 122221 11110 11110000 00 012
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc--chhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchh
Q 004992 431 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQ 508 (720)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 508 (720)
.+.+.|+....... ..-...+..+|..-+.++ +..++..|.-.|+.+-...+... ..+.-..+.+.++++++++
T Consensus 798 ~siA~cvA~Lt~~~-~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~---~~e~~~~iieaf~sp~edv 873 (1233)
T KOG1824|consen 798 YSIAKCVAALTCAC-PQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP---QNELKDTIIEAFNSPSEDV 873 (1233)
T ss_pred HHHHHHHHHHHHhc-cccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---chhhHHHHHHHcCCChHHH
Confidence 23344433322111 112333444555544433 55678888888888876654221 1233447778899999999
Q ss_pred hhhHHHHHHHHHh
Q 004992 509 QLDGAVALFKLAN 521 (720)
Q Consensus 509 ~~~a~~aL~~L~~ 521 (720)
+.+|+.||..++.
T Consensus 874 ksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 874 KSAASYALGSLAV 886 (1233)
T ss_pred HHHHHHHhhhhhc
Confidence 9999999999886
No 93
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=7e-05 Score=78.67 Aligned_cols=231 Identities=22% Similarity=0.267 Sum_probs=168.4
Q ss_pred HHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh
Q 004992 139 ALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (720)
Q Consensus 139 ~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 216 (720)
+|.-|+ ..|+..+.+ -+-++.+|.+..+ =++..|+..+..++...++.- ...+|.|.+-|
T Consensus 129 AL~GLS~fvTpdLARDL-----a~Dv~tLL~sskp--------YvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkL 190 (877)
T KOG1059|consen 129 ALSGLSCIVTPDLARDL-----ADDVFTLLNSSKP--------YVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKL 190 (877)
T ss_pred eecccccccCchhhHHH-----HHHHHHHHhcCch--------HHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhc
Confidence 344444 445554443 3667788887776 899999999999987665432 25779999999
Q ss_pred cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHH
Q 004992 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (720)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~ 295 (720)
.++|+.|+.+|..+++.|+..+|.+. -.+-|.+.++|.+ .+.-+....+...++|+...|..++. +++.
T Consensus 191 eDpDp~V~SAAV~VICELArKnPkny-----L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Liep 260 (877)
T KOG1059|consen 191 EDPDPSVVSAAVSVICELARKNPQNY-----LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEP 260 (877)
T ss_pred cCCCchHHHHHHHHHHHHHhhCCccc-----ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhH
Confidence 99999999999999999998777663 2356888888865 45677778889999998777766554 6888
Q ss_pred HHHhhccCC-hHHHHHHHHHHH--HHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhh
Q 004992 296 VIGLLSSCC-SESQREAALLLG--QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAG 372 (720)
Q Consensus 296 L~~ll~~~~-~~~~~~a~~~L~--~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 372 (720)
|.+++.+.. ..+..+|..++. ++..+.++.-..+ .-+++.|-.++.+.|+.++.-++-+++.++. .++..-.
T Consensus 261 lt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vq- 335 (877)
T KOG1059|consen 261 ITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQ- 335 (877)
T ss_pred HHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHH-
Confidence 999998764 344555555443 4444433332221 1256777788889999999999999999998 2222211
Q ss_pred hhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 373 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 373 l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
.--+.++++|.+.++.+|..|+..|..+..
T Consensus 336 ----a~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 336 ----AHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred ----HhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 235678899999999999999999999874
No 94
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.41 E-value=8.2e-06 Score=90.10 Aligned_cols=282 Identities=15% Similarity=0.029 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHccC--hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc----cChhhHHH
Q 004992 79 AAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA----VKPEHQQL 152 (720)
Q Consensus 79 ~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~----~~~~~~~~ 152 (720)
.+..|++.|..++.. ++. .-..++|.++.++.++.. +||..|+.+|..+. +-+..-..
T Consensus 439 tK~~ALeLl~~lS~~i~de~----~LDRVlPY~v~l~~Ds~a------------~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEV----KLDRVLPYFVHLLMDSEA------------DVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHH----HHhhhHHHHHHHhcCchH------------HHHHHHHHHHHHHHhhccCCCcccch
Confidence 488999999998873 222 113478999999999888 99999999999877 22333344
Q ss_pred HHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 004992 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (720)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (720)
+...-++|.|-.++.+.... -++..-+.+|..|+.... .+.+.+.-.....++++++.+ ...
T Consensus 503 iF~eYlfP~L~~l~~d~~~~-------~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse-------t~~ 564 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQ-------IVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE-------TAP 564 (1431)
T ss_pred hhHhhhhhhhHhhhccCccc-------eehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc-------ccc
Confidence 45566788888888875332 677777788888885221 122111111222234444433 111
Q ss_pred HhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHH
Q 004992 233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (720)
Q Consensus 233 ~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~ 312 (720)
... .......+.+. +-.....++.++.+-|++..+..|.-|+. ...+.-.+.-+++.|+..|++.+|.+|..-.
T Consensus 565 ~~~--~~~~~~~L~~~-V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~---FFGk~ksND~iLshLiTfLNDkDw~LR~aFf 638 (1431)
T KOG1240|consen 565 EQN--YNTELQALHHT-VEQMVSSLLSDSPPIVKRALLESIIPLCV---FFGKEKSNDVILSHLITFLNDKDWRLRGAFF 638 (1431)
T ss_pred ccc--cchHHHHHHHH-HHHHHHHHHcCCchHHHHHHHHHHHHHHH---HhhhcccccchHHHHHHHhcCccHHHHHHHH
Confidence 111 12223334332 44556678888888999888888888862 2223333445789999999999999887766
Q ss_pred HHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChh
Q 004992 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGS 392 (720)
Q Consensus 313 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~ 392 (720)
..|.-++. -....-++..++|.|.+.|.+..+.|...|+++|..|++ ..-.++.. --.+++...-+|-++|.-
T Consensus 639 dsI~gvsi---~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik---~~ll~K~~-v~~i~~~v~PlL~hPN~W 711 (1431)
T KOG1240|consen 639 DSIVGVSI---FVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK---LGLLRKPA-VKDILQDVLPLLCHPNLW 711 (1431)
T ss_pred hhccceEE---EEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH---hcccchHH-HHHHHHhhhhheeCchHH
Confidence 66655542 223333566789999999999999999999999999998 22222211 112455556677889999
Q ss_pred HHHHHHHHHHhcccC
Q 004992 393 LQHNAAFALYGLADN 407 (720)
Q Consensus 393 v~~~a~~~L~~l~~~ 407 (720)
+|..++..|..+++.
T Consensus 712 IR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 712 IRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999888653
No 95
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00012 Score=77.98 Aligned_cols=273 Identities=16% Similarity=0.162 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (720)
-+...|+.+|++++.- +..+. ..|.+.++|+...+ -+++.|+.|...+-...|+..+ .+++
T Consensus 122 ~vVglAL~alg~i~s~-Emard-----lapeVe~Ll~~~~~--------~irKKA~Lca~r~irK~P~l~e-----~f~~ 182 (866)
T KOG1062|consen 122 YVVGLALCALGNICSP-EMARD-----LAPEVERLLQHRDP--------YIRKKAALCAVRFIRKVPDLVE-----HFVI 182 (866)
T ss_pred eehHHHHHHhhccCCH-HHhHH-----hhHHHHHHHhCCCH--------HHHHHHHHHHHHHHHcCchHHH-----HhhH
Confidence 6778888899988843 33332 36888889988766 9999999999999987776544 3567
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC---------------CCHHHHHHHHHHHHH
Q 004992 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGVIGN 275 (720)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~---------------~~~~v~~~a~~~L~n 275 (720)
....+|.+.+..|...++..+..++..+++....+.+ +++-|+..|+. ++|-++..+++.|.-
T Consensus 183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI 260 (866)
T ss_pred HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence 8888888888889988999999999766766655554 56777766652 367788888999988
Q ss_pred hhcCCcchHHHHHHcCChHHHHHhhccC------ChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHH
Q 004992 276 LVHSSPNIKKEVLAAGALQPVIGLLSSC------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (720)
Q Consensus 276 L~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 349 (720)
|-.++++....+. +.|-++.... ...+..++..++..+-. +...+. . ++..|-++|.+.+..+
T Consensus 261 LGq~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~-~~~Lrv--l---ainiLgkFL~n~d~Ni 329 (866)
T KOG1062|consen 261 LGQNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMDIRS-NSGLRV--L---AINILGKFLLNRDNNI 329 (866)
T ss_pred hcCCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHhccC-CchHHH--H---HHHHHHHHhcCCccce
Confidence 8776665544332 2344444322 13455666666666532 222222 1 3566677777777788
Q ss_pred HHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhh
Q 004992 350 REMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI 429 (720)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~ 429 (720)
|..|+..|..... .+.....-. -..+++++++++..+++.|+..+..|... .|...
T Consensus 330 rYvaLn~L~r~V~---~d~~avqrH----r~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~---------------- 385 (866)
T KOG1062|consen 330 RYVALNMLLRVVQ---QDPTAVQRH----RSTILECLKDPDVSIKRRALELSYALVNE-SNVRV---------------- 385 (866)
T ss_pred eeeehhhHHhhhc---CCcHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHH----------------
Confidence 8888888887776 322211111 13478889999999999999999998753 33322
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCC
Q 004992 430 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 481 (720)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 481 (720)
++..|+.++...+++++...+.-+..++..
T Consensus 386 ----------------------mv~eLl~fL~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 386 ----------------------MVKELLEFLESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred ----------------------HHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 455678888888888888888888877654
No 96
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.31 E-value=0.00012 Score=75.89 Aligned_cols=212 Identities=22% Similarity=0.104 Sum_probs=147.8
Q ss_pred hHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHH
Q 004992 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (720)
Q Consensus 106 i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a 185 (720)
+..|+..|.+.+. .++..++..|+.+-. ....+.|+.+|++.+. .++..+
T Consensus 88 ~~~L~~~L~d~~~------------~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p--------~vR~aa 137 (410)
T TIGR02270 88 LRSVLAVLQAGPE------------GLCAGIQAALGWLGG----------RQAEPWLEPLLAASEP--------PGRAIG 137 (410)
T ss_pred HHHHHHHhcCCCH------------HHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCCh--------HHHHHH
Confidence 7788888887766 788888888876552 2246778888877655 777766
Q ss_pred HHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHH
Q 004992 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265 (720)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v 265 (720)
+..+...- ....+.+..+|+++++.|+..|+.+|+.+.. ...++.|...+.+.++.|
T Consensus 138 l~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~V 194 (410)
T TIGR02270 138 LAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEV 194 (410)
T ss_pred HHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHH
Confidence 65555411 1234678888889999999999999998874 346777888888999999
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCC
Q 004992 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (720)
Q Consensus 266 ~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 345 (720)
|..|++.+..+- .+. .+..+..............+..++... ..+ ..++.|..+++++
T Consensus 195 R~aA~~al~~lG--~~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~ 252 (410)
T TIGR02270 195 RFAALEAGLLAG--SRL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAA 252 (410)
T ss_pred HHHHHHHHHHcC--CHh---------HHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcCh
Confidence 999888887772 121 234455534433333333333333332 111 4678888888874
Q ss_pred CHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCC
Q 004992 346 DVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 409 (720)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 409 (720)
. ++..++.+++.+-. ...++.|+..+.+.. ++..|..++..|+.-+-
T Consensus 253 ~--vr~~a~~AlG~lg~-------------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~l 299 (410)
T TIGR02270 253 A--TRREALRAVGLVGD-------------VEAAPWCLEAMREPP--WARLAGEAFSLITGMDV 299 (410)
T ss_pred h--hHHHHHHHHHHcCC-------------cchHHHHHHHhcCcH--HHHHHHHHHHHhhCCCc
Confidence 4 89999999997776 457888888887543 99999999999987443
No 97
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=4.2e-05 Score=81.45 Aligned_cols=351 Identities=14% Similarity=0.116 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHH
Q 004992 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (720)
Q Consensus 132 v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (720)
=+..+-++++.+.-+.+. ++..+.+++.+...+- ++++.+---+.+.+...+... .+++..
T Consensus 30 r~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dl--------elKKlvyLYl~nYa~~~P~~a-----~~avnt 90 (734)
T KOG1061|consen 30 RKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDL--------ELKKLVYLYLMNYAKGKPDLA-----ILAVNT 90 (734)
T ss_pred HHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCc--------hHHHHHHHHHHHhhccCchHH-----Hhhhhh
Confidence 344555666666633443 3456777777776654 888888888888887666433 356788
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcC
Q 004992 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (720)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~ 291 (720)
++.-..++++.+|..|++.++.+.. + .+.+. ....+...++++++.+|..+...+.++-..++ +.....|
T Consensus 91 ~~kD~~d~np~iR~lAlrtm~~l~v--~----~i~ey-~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~g 160 (734)
T KOG1061|consen 91 FLKDCEDPNPLIRALALRTMGCLRV--D----KITEY-LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSG 160 (734)
T ss_pred hhccCCCCCHHHHHHHhhceeeEee--h----HHHHH-HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccc
Confidence 8888889999999999888887764 1 22222 57788999999999999999999999954443 5567789
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhh
Q 004992 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQA 371 (720)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 371 (720)
+++.|.+++.+.++.+..+|..+|..+...++...........+..++..+...+.--+...+.++.+-.. .+. +.
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p---~d~-~e 236 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVP---KDS-RE 236 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCC---CCc-hh
Confidence 99999999999999999999999999986554322222222334444444444444444444444443332 111 11
Q ss_pred hhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHH----------
Q 004992 372 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL---------- 441 (720)
Q Consensus 372 ~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~---------- 441 (720)
....+..+...+.+.++.+...+..++.++...........-...-+.+...............+++
T Consensus 237 ---a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~ 313 (734)
T KOG1061|consen 237 ---AEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEI 313 (734)
T ss_pred ---HHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHH
Confidence 1224556666667777777777777777776543332222222222222221111111110000000
Q ss_pred -----------------------HHHHHhhh----hhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcH
Q 004992 442 -----------------------KRLEEKIH----GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL 494 (720)
Q Consensus 442 -----------------------~~l~~~~~----~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 494 (720)
..+..... ..++.-+...-..-+++.-..+++++++++...+.. .+++
T Consensus 314 ~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv 388 (734)
T KOG1061|consen 314 LKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCV 388 (734)
T ss_pred HHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhH
Confidence 00111111 124444444445567778888999999998765433 5789
Q ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 495 ELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 495 ~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+.|.++++.+..-+...+...+..+.++-
T Consensus 389 ~~lLell~~~~~yvvqE~~vvi~dilRky 417 (734)
T KOG1061|consen 389 SILLELLETKVDYVVQEAIVVIRDILRKY 417 (734)
T ss_pred HHHHHHHhhcccceeeehhHHHHhhhhcC
Confidence 99999999877776667777777777653
No 98
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.31 E-value=1.6e-05 Score=81.58 Aligned_cols=324 Identities=15% Similarity=0.142 Sum_probs=191.4
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhH--HHHHHcCChHHHHHHHhccCCCccchhhhHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ--QLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~--~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v 181 (720)
++..++.+|++..+ .+|.+|+...+.|+ --..+. ..+...| ..|..-|....+ |+
T Consensus 605 ivStiL~~L~~k~p------------~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~yp--------Ev 662 (975)
T COG5181 605 IVSTILKLLRSKPP------------DVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYP--------EV 662 (975)
T ss_pred HHHHHHHHhcCCCc------------cHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccH--------HH
Confidence 34556677777777 89999999999988 111111 1122222 223344443333 77
Q ss_pred HHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcH--HHHHhCCCHHHHHHhhc
Q 004992 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIVECNALPTLILMLR 259 (720)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~i~~~g~l~~L~~ll~ 259 (720)
.-..+.+++.+.+...-...+--..|++|.|..+|++....+..+....+..++...++.. ..-.. +---|+..|+
T Consensus 663 Lgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR--IcfeLvd~Lk 740 (975)
T COG5181 663 LGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR--ICFELVDSLK 740 (975)
T ss_pred HHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHH
Confidence 7766666666654222111111134889999999999999999999999999987555421 11111 2335677888
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHH
Q 004992 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (720)
Q Consensus 260 ~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 339 (720)
+.+.++|..|..+++.++.- +--+.++..|++-|+..+-..|....-+++-++..+.. ..++|.|+
T Consensus 741 s~nKeiRR~A~~tfG~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm 806 (975)
T COG5181 741 SWNKEIRRNATETFGCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLM 806 (975)
T ss_pred HhhHHHHHhhhhhhhhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHH
Confidence 89999999999999999632 11123455566555554444444444445444432111 13567777
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcc
Q 004992 340 EMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 419 (720)
Q Consensus 340 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 419 (720)
.=-..++..++.-.+.+++.+-+.. +...+..+ ....|.+.+.+.+.++..|..|...|..|+.+....- .+...
T Consensus 807 ~dY~TPe~nVQnGvLkam~fmFeyi-g~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg--~eda~ 881 (975)
T COG5181 807 SDYETPEANVQNGVLKAMCFMFEYI-GQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG--DEDAA 881 (975)
T ss_pred hcccCchhHHHHhHHHHHHHHHHHH-HHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc--cHHHH
Confidence 6667788889999899888887732 12222332 2356777888899999999999999999987644311 11111
Q ss_pred cccccc----h-----hhhhhhhHHHHHHHHHHHHHhh-hhhhHHHHHHHHHhcchhHHHHHHHHHH
Q 004992 420 VQKLQD----G-----EFIVQATKDCVAKTLKRLEEKI-HGRVLNHLLYLMRVAEKGVQRRVALALA 476 (720)
Q Consensus 420 v~~L~~----~-----~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~L~ 476 (720)
+. |.+ . --..+...+|+. .+.... .+.++..+.+-+-++...||..-...+-
T Consensus 882 IH-LlNllwpNIle~sPhvi~~~~Eg~e----~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 882 IH-LLNLLWPNILEPSPHVIQSFDEGME----SFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HH-HHHHhhhhccCCCcHHHHHHHHHHH----HHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHh
Confidence 11 111 0 001222233322 222222 3446666666777888887765554443
No 99
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.28 E-value=0.0011 Score=68.10 Aligned_cols=334 Identities=15% Similarity=0.086 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 004992 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (720)
Q Consensus 129 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (720)
.+-.+++|+..|..+-..... +.-.+++.+..+...... -.-...+++...+...++.....+
T Consensus 203 ~~isqYHalGlLyq~kr~dkm--------a~lklv~hf~~n~smknq----~a~V~lvr~~~~ll~~n~q~~~q~----- 265 (898)
T COG5240 203 NPISQYHALGLLYQSKRTDKM--------AQLKLVEHFRGNASMKNQ----LAGVLLVRATVELLKENSQALLQL----- 265 (898)
T ss_pred ChHHHHHHHHHHHHHhcccHH--------HHHHHHHHhhcccccccc----hhheehHHHHHHHHHhChHHHHHH-----
Confidence 346788888888776633222 234455555444321110 111222334444444455444333
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHH
Q 004992 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (720)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~ 288 (720)
.|.|-..+++.-..|...++++++.++..+ ......+. .+..|-.+|++.....|-.|+++|..|+...|....
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~--- 339 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS--- 339 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee---
Confidence 366667777777888889999999988532 23333433 688888899999999999999999999876664211
Q ss_pred HcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcc
Q 004992 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMH 368 (720)
Q Consensus 289 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (720)
-.=+-+-.++.+.+..+...|...|..- +.++....+ +..+..++.+-+...+..++.++..|+.. -+.
T Consensus 340 --vcN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLsl~--Fp~ 408 (898)
T COG5240 340 --VCNKEVESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLSLL--FPS 408 (898)
T ss_pred --ecChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHHhh--CcH
Confidence 0112233444554444444444444432 233433333 23333334443334444455555555551 111
Q ss_pred hhh--------hhhhcCC-------HHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhh
Q 004992 369 NQA--------GIAHNGG-------LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 433 (720)
Q Consensus 369 ~~~--------~l~~~~~-------i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~ 433 (720)
.+. .+.+.|+ ++.+.+++. ..|+-++.|+..|+....+.+..+..
T Consensus 409 k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~------------------- 468 (898)
T COG5240 409 KKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQIT------------------- 468 (898)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHH-------------------
Confidence 111 1111222 122222221 12333444444444433322221111
Q ss_pred HHHHHHHHHHHHHh-----hhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchh
Q 004992 434 KDCVAKTLKRLEEK-----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQ 508 (720)
Q Consensus 434 ~~~~~~~~~~l~~~-----~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 508 (720)
.+++..+... ..+..+..+..-+--.+.-||..|+.+|..++-+.+... ....+...|..++++.|.++
T Consensus 469 ----vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~--~~~sv~~~lkRclnD~DdeV 542 (898)
T COG5240 469 ----VRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV--SPQSVENALKRCLNDQDDEV 542 (898)
T ss_pred ----HHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc--cHHHHHHHHHHHhhcccHHH
Confidence 1111111111 122334444443444567789999999999977654332 23344677888999999999
Q ss_pred hhhHHHHHHHHHhh
Q 004992 509 QLDGAVALFKLANK 522 (720)
Q Consensus 509 ~~~a~~aL~~L~~~ 522 (720)
|..|+.++.+|-..
T Consensus 543 RdrAsf~l~~~~~~ 556 (898)
T COG5240 543 RDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999988743
No 100
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.28 E-value=7e-06 Score=67.32 Aligned_cols=136 Identities=20% Similarity=0.224 Sum_probs=111.4
Q ss_pred ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 004992 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (720)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (720)
.++.|+.-.....+. +.++....-|.|++. +|.+-..+.+..++..++..+..++..+...+...|+|+|-
T Consensus 17 Ylq~LV~efq~tt~~-------eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~- 87 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNI-------EAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL- 87 (173)
T ss_pred HHHHHHHHHHHhccH-------HHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-
Confidence 345555555444332 888889999999998 67777788889999999999999999999999999999997
Q ss_pred ChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhcc
Q 004992 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (720)
Q Consensus 238 ~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~ 302 (720)
++.+.+.|.+.+++|.++..+.++...+...++.++..|+......+..+....++..+..+-.+
T Consensus 88 d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s 152 (173)
T KOG4646|consen 88 DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRES 152 (173)
T ss_pred ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999987777777776665555555555433
No 101
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.4e-05 Score=80.83 Aligned_cols=309 Identities=14% Similarity=0.122 Sum_probs=195.9
Q ss_pred HHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHH
Q 004992 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (720)
Q Consensus 134 ~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (720)
.+++.+|..++ ...-.|.-+.+..+.+.|+++|.+++- -+...+...++|+.-.-...+..+...|++..+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--------mi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl 478 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--------MIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVL 478 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--------eeeccchhhhhheeeeccchHHHHHHhhHHHHH
Confidence 34556666677 445567778888999999999998654 444556777888877677788889999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCChhc-HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc---hHHHHH
Q 004992 213 VELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN---IKKEVL 288 (720)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~---~~~~~~ 288 (720)
+.++.+.+..++....|+++++..++..+ +-.....-++..++.+.+++.-.|+.+++..+.|++.+... .....+
T Consensus 479 ~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~ 558 (743)
T COG5369 479 VNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFI 558 (743)
T ss_pred HHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEE
Confidence 99999999999999999999999855544 33455666899999999999999999999999999764332 111111
Q ss_pred Hc----CChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHh-cCChHHHHHHhcC---C--------CHHHHHH
Q 004992 289 AA----GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQS---P--------DVQLREM 352 (720)
Q Consensus 289 ~~----~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~---~--------~~~v~~~ 352 (720)
.. -+.+.++..+...+|-.....+..|.+++..++..+..+.. ...+..+...|.. . ...+-..
T Consensus 559 K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p 638 (743)
T COG5369 559 KATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLP 638 (743)
T ss_pred ecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCc
Confidence 11 14566777777777777777899999888766665555544 3444444444311 0 0111111
Q ss_pred HHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHH---hcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhh
Q 004992 353 SAFALGRLAQVITDMHNQAGIAHNGGLVPLLKL---LDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI 429 (720)
Q Consensus 353 a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~l---l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~ 429 (720)
-.....++.+. ..+......-. |.+-.. -..+|.++..+..|.+.|+.-..++.+.
T Consensus 639 ~s~~~v~l~e~--~d~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~v---------------- 697 (743)
T COG5369 639 ISYTIVNLSEN--SDKFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEV---------------- 697 (743)
T ss_pred cceeeeccccc--ccccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCcc----------------
Confidence 11112222220 00000000000 111111 1223555666677777776543332110
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhh
Q 004992 430 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 478 (720)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 478 (720)
......+.+.....|+...+..+..++++.||+.+--+|.++
T Consensus 698 -------tratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 698 -------TRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred -------chhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 011223334445667888888888899999999999888876
No 102
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.22 E-value=2.4e-06 Score=78.18 Aligned_cols=143 Identities=16% Similarity=0.198 Sum_probs=90.2
Q ss_pred CCchhhhhHHHHHHHHHhhcccccccCCCCCCCCccccchhhhhcCC-CcceEEEEEC---------------CeEEehh
Q 004992 504 TNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNA-TLSDVTFLVE---------------GRRFYAH 567 (720)
Q Consensus 504 ~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv~~~~~---------------~~~~~~h 567 (720)
..++.++.-...|.+|+.+-..... ...++. -+++.. .+.|+.+.+. +.++++|
T Consensus 197 gmEd~~fqn~diL~QL~edFG~~kk---------Ld~Dmk-glfd~~c~~d~li~~ssD~elveafggeeNc~deeikah 266 (401)
T KOG2838|consen 197 GMEDLGFQNSDILEQLCEDFGCFKK---------LDEDMK-GLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAH 266 (401)
T ss_pred chhhcCCchHHHHHHHHHhhCCchh---------hhHHHH-HHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHH
Confidence 4456777778888888876543332 222222 233333 3334444332 2478999
Q ss_pred HHHHhhcchhHhhcccCCcCCCCC---------CceecCC--CCHHHHHHHHHHHhcCCcccC-----------------
Q 004992 568 RICLLASSDAFRAMFDGGYREKDA---------RDIEIPN--IRWEVFELMMRFIYTGSVDVT----------------- 619 (720)
Q Consensus 568 ~~iL~~~s~~f~~~~~~~~~e~~~---------~~i~l~~--~~~~~~~~~l~~~Yt~~~~~~----------------- 619 (720)
+.|.++||++|+.++.....|+.+ ..|.+.+ ++..--..+++|+||+.++.+
T Consensus 267 kai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakA 346 (401)
T KOG2838|consen 267 KAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKA 346 (401)
T ss_pred HHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHH
Confidence 999999999999999766554332 2344544 344444578899999988632
Q ss_pred -----------hhhHHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHH
Q 004992 620 -----------LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVS 656 (720)
Q Consensus 620 -----------~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~ 656 (720)
...+++++.+|-+|.+.-|.+.|+..+......++..
T Consensus 347 itnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn 394 (401)
T KOG2838|consen 347 ITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSN 394 (401)
T ss_pred HHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 1235677777777777777777777777766555443
No 103
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.6e-05 Score=79.00 Aligned_cols=295 Identities=15% Similarity=0.116 Sum_probs=193.7
Q ss_pred HHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC
Q 004992 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (720)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~ 303 (720)
..+++.+|..++......|..+.+..+...|+++|.+++..+.-.+...++|+...-...+..++..|+++.++.++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34556666677764455677777888999999999998888888889999999877778889999999999999999998
Q ss_pred ChHHHHHHHHHHHHHhccCcch-hhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcC-cchhhhhhhcC----
Q 004992 304 CSESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITD-MHNQAGIAHNG---- 377 (720)
Q Consensus 304 ~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~l~~~~---- 377 (720)
+..++....|++..+..++.+. +-.+...-++..++++..+++..+++.++..|.|+...... ++....+.+..
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 8999999999999998766544 33566677889999999999999999999999999982111 11222222222
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhc--cccc----ccch----hhhhh-hhHHH---HHHHHHH
Q 004992 378 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG--GVQK----LQDG----EFIVQ-ATKDC---VAKTLKR 443 (720)
Q Consensus 378 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~--~v~~----L~~~----~~~~~-~~~~~---~~~~~~~ 443 (720)
....+++.+...+|-.....++.|.+++...+....++... .+.. |... .+... ..... ......+
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 23446666677788777778999999987666655544321 1100 0000 00000 00000 0000000
Q ss_pred HHH---hhhhhhH--HHHHHHHH----hcchhHHHHHHHHHHhhcCCccc----------chhhhccCcHHHHHHhhcCC
Q 004992 444 LEE---KIHGRVL--NHLLYLMR----VAEKGVQRRVALALAHLCSPDDQ----------RTIFIDGGGLELLLGLLGST 504 (720)
Q Consensus 444 l~~---~~~~~~~--~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~----------~~~~~~~~~~~~L~~ll~~~ 504 (720)
+++ .+..+.. |.+= .++ +++.+.-.+..+.+.|+....++ .+++++.|.-..|+.+..+.
T Consensus 646 l~e~~d~f~r~~~~~p~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~ 724 (743)
T COG5369 646 LSENSDKFKRLVLTTPHLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKD 724 (743)
T ss_pred ccccccccccceecCCCcc-ccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccC
Confidence 111 1111111 1111 111 12445666777777777554432 34567777777777788888
Q ss_pred CchhhhhHHHHHHHH
Q 004992 505 NPKQQLDGAVALFKL 519 (720)
Q Consensus 505 ~~~v~~~a~~aL~~L 519 (720)
.+.||+.+-.+|.++
T Consensus 725 Sl~vrek~~taL~~l 739 (743)
T COG5369 725 SLIVREKIGTALENL 739 (743)
T ss_pred cHHHHHHHHHHHHhh
Confidence 889999999999886
No 104
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.17 E-value=1.7e-05 Score=65.13 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHH
Q 004992 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (720)
Q Consensus 54 ~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~ 133 (720)
.....+..++.-.... .+.+.++....-|+|.+-+|-+-..+.+..++..++.-|+..+. .+.
T Consensus 13 ~Rl~Ylq~LV~efq~t-----t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne------------~Lv 75 (173)
T KOG4646|consen 13 DRLEYLQHLVDEFQTT-----TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNE------------LLV 75 (173)
T ss_pred cHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccH------------HHH
Confidence 4455566666655554 46667888899999999999998999999999999999998888 899
Q ss_pred HHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHH
Q 004992 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (720)
Q Consensus 134 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (720)
+.+...|.|+|-++.+...+.+.++++.++..+.++.. .+...++..+..++......+..+....++..+.
T Consensus 76 efgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e--------~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~ 147 (173)
T KOG4646|consen 76 EFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPE--------ITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ 147 (173)
T ss_pred HHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChH--------HHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence 99999999999888899999999999999999988776 8888899999999987776666665444444443
Q ss_pred H
Q 004992 214 E 214 (720)
Q Consensus 214 ~ 214 (720)
+
T Consensus 148 r 148 (173)
T KOG4646|consen 148 R 148 (173)
T ss_pred H
Confidence 3
No 105
>PF05536 Neurochondrin: Neurochondrin
Probab=98.17 E-value=0.0034 Score=68.00 Aligned_cols=242 Identities=16% Similarity=0.151 Sum_probs=163.6
Q ss_pred hHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChh---hHHHHHHcCChHHHHHHHhccCCCccchhhhHH
Q 004992 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE---HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (720)
Q Consensus 106 i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v 181 (720)
+..-+.+|+..+. +-|..++-.+.+++ .++. .++.+.+.=+.+-+-++|+....+.. .+....
T Consensus 7 l~~c~~lL~~~~D------------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~-~~~~~~ 73 (543)
T PF05536_consen 7 LEKCLSLLKSADD------------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSD-CPPEEY 73 (543)
T ss_pred HHHHHHHhccCCc------------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCC-CCHHHH
Confidence 4556677877765 67788888888988 3332 23346666667888888887543221 123388
Q ss_pred HHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCH-HHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC
Q 004992 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (720)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~ 260 (720)
+.-|+.+|..+|. .++....-.-.+-+|.|++.+...+. .+...++.+|..++. .+++++.+.+.|+++.|...+.+
T Consensus 74 ~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 74 LSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh
Confidence 9999999999998 55443222223678999999987766 999999999999995 89999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchH---HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcch-hhHHHhc----
Q 004992 261 EDSAIHYEAVGVIGNLVHSSPNIK---KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQR---- 332 (720)
Q Consensus 261 ~~~~v~~~a~~~L~nL~~~~~~~~---~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~---- 332 (720)
.+.....++.++.++........ ..-.-..+++.+...+.......+-..+..|.++-...+.. .......
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 66667888888888875433110 00001134455556666556667778888888886544211 1111222
Q ss_pred CChHHHHHHhcC-CCHHHHHHHHHHHHHHhhh
Q 004992 333 GAVRPLIEMLQS-PDVQLREMSAFALGRLAQV 363 (720)
Q Consensus 333 ~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 363 (720)
.+...+..++++ ..+.-|..++.....|...
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 233445555555 5677788888888888874
No 106
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.16 E-value=1.8e-06 Score=91.19 Aligned_cols=68 Identities=28% Similarity=0.430 Sum_probs=55.7
Q ss_pred CCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCC------------CCceecCCCCHHHHHHHHHHHhcCCcc
Q 004992 550 ATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD------------ARDIEIPNIRWEVFELMMRFIYTGSVD 617 (720)
Q Consensus 550 ~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~------------~~~i~l~~~~~~~~~~~l~~~Yt~~~~ 617 (720)
..+.||+|.+++..|++||.||++||+||+.+|...-+.+. ...|.+.++++..|+.+|+|+||++.-
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~ 635 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLL 635 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccccc
Confidence 35679999999999999999999999999999975432211 124557789999999999999999653
No 107
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.00058 Score=67.97 Aligned_cols=233 Identities=18% Similarity=0.191 Sum_probs=171.3
Q ss_pred HHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCC-----hh----cHHHHHhCCCHHHHH
Q 004992 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-----DE----NKNQIVECNALPTLI 255 (720)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-----~~----~~~~i~~~g~l~~L~ 255 (720)
.+.-+.-++. .|..-..+++.++++.|+.+|.+.|..+..++...+..|+..+ .+ ....+++.++++.|+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 3444555555 5666667888999999999999999999999999999999422 12 244566788899998
Q ss_pred HhhcCCCH------HHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC--ChHHHHHHHHHHHHHhccCcchhh
Q 004992 256 LMLRSEDS------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKV 327 (720)
Q Consensus 256 ~ll~~~~~------~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~ 327 (720)
.-+..-+. .-...++..+-|+..-.+..+..+++.|++..|+.-+... -......|..++.-+-..+..++.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 87654222 3456778899999988899999999999888888755433 234566677777777665666777
Q ss_pred HHHhcCChHHHHHHhc-----C----CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHH
Q 004992 328 HIVQRGAVRPLIEMLQ-----S----PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 398 (720)
Q Consensus 328 ~~~~~~~~~~L~~ll~-----~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~ 398 (720)
.+..-+++..++.-+. + ...+.-++...+|+.+.. .+.++..|....+++.+.-+++. ....+..++
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm---~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal 338 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM---APANRERFLKGEGLQLMNLMLRE-KKVSRGSAL 338 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc---ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence 7777788888888762 2 134677888888888888 88999999999999877666665 455667788
Q ss_pred HHHHhcccCC---CchhHHHhhccccc
Q 004992 399 FALYGLADNE---DNVADFIRVGGVQK 422 (720)
Q Consensus 399 ~~L~~l~~~~---~~~~~l~~~~~v~~ 422 (720)
.+|-....++ +++..+++.+++..
T Consensus 339 kvLd~am~g~~gt~~C~kfVe~lGLrt 365 (536)
T KOG2734|consen 339 KVLDHAMFGPEGTPNCNKFVEILGLRT 365 (536)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhHHH
Confidence 8888886654 45566666655443
No 108
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.09 E-value=0.00048 Score=70.53 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=136.8
Q ss_pred HHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC--CHHHHH
Q 004992 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHY 267 (720)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~--~~~v~~ 267 (720)
..+...++..+....-....+.+..++-+++.++|..+.++++.+.. +....+.+.+.++--.++.-|..+ +..-|+
T Consensus 8 v~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~ 86 (371)
T PF14664_consen 8 VDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVERE 86 (371)
T ss_pred HHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence 33444455454444444455556555545559999999999999997 667777777766544555555433 456788
Q ss_pred HHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCH
Q 004992 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347 (720)
Q Consensus 268 ~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 347 (720)
+|++.+..+...... ...+..|++..++.+..+.+...+..|..+|..++-.++ ..+...|++..+++.+.++..
T Consensus 87 QALkliR~~l~~~~~--~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 87 QALKLIRAFLEIKKG--PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHhcCC--cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccH
Confidence 999999988755322 112356788999999999999999999999999987444 457789999999999988777
Q ss_pred HHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh
Q 004992 348 QLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL 386 (720)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll 386 (720)
++.+..+.++..+.. .+..|..+...--++.++.-+
T Consensus 162 ~~~~~l~~~lL~lLd---~p~tR~yl~~~~dL~~l~apf 197 (371)
T PF14664_consen 162 SISESLLDTLLYLLD---SPRTRKYLRPGFDLESLLAPF 197 (371)
T ss_pred hHHHHHHHHHHHHhC---CcchhhhhcCCccHHHHHHhh
Confidence 799999999999998 888888766655566665555
No 109
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.08 E-value=1.7e-05 Score=81.42 Aligned_cols=265 Identities=15% Similarity=0.097 Sum_probs=168.9
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhccCCh--hcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 004992 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKND--ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (720)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~--~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~ 286 (720)
+..++.+|+++.+.+|..|+...+.|+.--. ...+.+.. +=..|..-+....+++.-..+.+++.+.........+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~k--lg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAK--LGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHH--HhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 5566788899999999999998888873100 11122222 2334666777889999888888888886432221111
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcC
Q 004992 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITD 366 (720)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (720)
.-..|++|.|..+|.+....+..+....+..++...++....---..+--.|+++|++.+-++|.+|...++.++...|.
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP 763 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP 763 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH
Confidence 12368999999999999999999999999999876555321110112334567778888999999999999999984321
Q ss_pred cchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHH
Q 004992 367 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 446 (720)
Q Consensus 367 ~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~ 446 (720)
..++..|++-|+..+-..|....-+|.-.+....
T Consensus 764 ---------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg------------------------------------- 797 (975)
T COG5181 764 ---------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG------------------------------------- 797 (975)
T ss_pred ---------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------------------------------------
Confidence 1233444444444333333333333433332211
Q ss_pred hhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 447 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 447 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.-.++|.|+.=...++.+||...+++++.+-..--+...=.-....|.|...+.+.|+-.|.-|.-.+..|+-+-
T Consensus 798 --pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 798 --PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred --chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 112455566556677888888888888877443221111112244677888888999999988888888887653
No 110
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.06 E-value=0.00076 Score=69.54 Aligned_cols=187 Identities=31% Similarity=0.376 Sum_probs=143.5
Q ss_pred CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004992 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (720)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (720)
..++.+..++.+.+. .++..+.+.+..+-. ...++.+..++.+.++.+|..+..+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~~--------~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~ 103 (335)
T COG1413 43 EAADELLKLLEDEDL--------LVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD 103 (335)
T ss_pred hhHHHHHHHHcCCCH--------HHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Confidence 357888888888744 788888877554432 2367899999999999999999998888773
Q ss_pred CChhcHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCC-----------
Q 004992 237 KNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC----------- 304 (720)
Q Consensus 237 ~~~~~~~~i~~~g~l~~L~~ll~-~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~----------- 304 (720)
...++.++.++. +++..||..+.++|..+-. +. .+..++..+.+..
T Consensus 104 -----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~--~~---------a~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 104 -----------PEAVPPLVELLENDENEGVRAAAARALGKLGD--ER---------ALDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred -----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc--hh---------hhHHHHHHhccchhhhhhhhccch
Confidence 346888999888 6899999999999999931 11 2566777777654
Q ss_pred -hHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHH
Q 004992 305 -SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLL 383 (720)
Q Consensus 305 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~ 383 (720)
+.++..+...+..+- ....++.+...+.+.+..+|..|..+|+.+.. .. ..+.+.+.
T Consensus 162 ~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~---~~--------~~~~~~l~ 219 (335)
T COG1413 162 LLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGS---EN--------VEAADLLV 219 (335)
T ss_pred HHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhc---ch--------hhHHHHHH
Confidence 235556666666553 23357889999999999999999999999887 22 34567788
Q ss_pred HHhcCCChhHHHHHHHHHHhccc
Q 004992 384 KLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 384 ~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
..+.+.+..++..++.++..+-.
T Consensus 220 ~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 220 KALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHhcCCCHHHHHHHHHHhcccCc
Confidence 89999999999999999988754
No 111
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.00069 Score=72.22 Aligned_cols=310 Identities=15% Similarity=0.106 Sum_probs=193.4
Q ss_pred HHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 004992 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (720)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 239 (720)
.-|..+|.+..+. +.++..=+++..++++.. . ....|.+++...+.+.++++..---|...++..+
T Consensus 38 ~dL~~lLdSnkd~-------~KleAmKRIia~iA~G~d-v------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqp 103 (968)
T KOG1060|consen 38 DDLKQLLDSNKDS-------LKLEAMKRIIALIAKGKD-V------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQP 103 (968)
T ss_pred HHHHHHHhccccH-------HHHHHHHHHHHHHhcCCc-H------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCC
Confidence 4567788777662 444444445566666433 2 2356899999999999999988777777775333
Q ss_pred hcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHh
Q 004992 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (720)
Q Consensus 240 ~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (720)
+. . -=-|..+-+-|+++++.+|..|+++|..+- -.++..=.+-.+-+...+..+-+|+.|+-+|..+-
T Consensus 104 dL----A-LLSIntfQk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLY 171 (968)
T KOG1060|consen 104 DL----A-LLSINTFQKALKDPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLY 171 (968)
T ss_pred Cc----e-eeeHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHh
Confidence 22 1 113778889999999999988888888772 12222223445556667888999999999999997
Q ss_pred ccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHH
Q 004992 320 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 399 (720)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~ 399 (720)
+-+++.... ++..+-.+|.+.++.|.-.|+.++..+|- +. -.+. .+-...+++++.+-+.-=|.....
T Consensus 172 sLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCP-----er-ldLI-HknyrklC~ll~dvdeWgQvvlI~ 239 (968)
T KOG1060|consen 172 SLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCP-----ER-LDLI-HKNYRKLCRLLPDVDEWGQVVLIN 239 (968)
T ss_pred cCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhch-----hH-HHHh-hHHHHHHHhhccchhhhhHHHHHH
Confidence 766666553 45667778899999999999999887775 22 2222 234566777775555444555566
Q ss_pred HHHhcccCCCchh----HHHhhcc-cccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHH
Q 004992 400 ALYGLADNEDNVA----DFIRVGG-VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 474 (720)
Q Consensus 400 ~L~~l~~~~~~~~----~l~~~~~-v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 474 (720)
.|...++..=... ...+..+ -..+.+..-..+.+- ...--..-+++..-.++.+.++.|..+++++
T Consensus 240 mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~---------~~d~D~~lLL~stkpLl~S~n~sVVmA~aql 310 (968)
T KOG1060|consen 240 MLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPY---------VNDPDLKLLLQSTKPLLQSRNPSVVMAVAQL 310 (968)
T ss_pred HHHHHHHhcCCCccccccccccCcccccccccccccCCCc---------ccCccHHHHHHhccHHHhcCCcHHHHHHHhH
Confidence 6666554211111 1111111 000000000000000 0000011244555567888999999999999
Q ss_pred HHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 475 LAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 475 L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+..++...+.. +++..|+.++.++ +.+|......+..++...
T Consensus 311 ~y~lAP~~~~~------~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~ 352 (968)
T KOG1060|consen 311 FYHLAPKNQVT------KIAKALVRLLRSN-REVQYVVLQNIATISIKR 352 (968)
T ss_pred HHhhCCHHHHH------HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcc
Confidence 99998876433 3378888877654 667888888888887653
No 112
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00022 Score=74.27 Aligned_cols=253 Identities=15% Similarity=0.165 Sum_probs=165.7
Q ss_pred HHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCCh--
Q 004992 162 LVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-- 239 (720)
Q Consensus 162 L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-- 239 (720)
+..+..+.+. .|+..|+..|..|..+.. ... ......++++++.+..||.+|.+.+.-.+.-.+
T Consensus 203 l~~~~~~~D~--------~Vrt~A~eglL~L~eg~k-L~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 203 LIYLEHDQDF--------RVRTHAVEGLLALSEGFK-LSK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred HHHHhcCCCc--------chHHHHHHHHHhhccccc-ccH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 5555554444 677777777777665221 111 134677888999999999999777765553221
Q ss_pred ----hcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHH-
Q 004992 240 ----ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL- 314 (720)
Q Consensus 240 ----~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~- 314 (720)
.....+.+ .++..+...+.+.+..||..|..+|+.+...++++..+..+..++..+-. +.........
T Consensus 269 ~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRR------kr~ahkrpk~l 341 (823)
T KOG2259|consen 269 LERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRR------KRTAHKRPKAL 341 (823)
T ss_pred ccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhh------hhhcccchHHH
Confidence 11222333 36888899999999999999999999997665555444444333331111 1111111111
Q ss_pred HHHH--hc-----------cCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHH
Q 004992 315 LGQF--AA-----------TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVP 381 (720)
Q Consensus 315 L~~l--~~-----------~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~ 381 (720)
..+- ++ ..+.....++..|.-..++.-+.+.-.+||++|+..++.|+. +.+... ...++.
T Consensus 342 ~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~--ssP~FA-----~~aldf 414 (823)
T KOG2259|consen 342 YSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT--SSPGFA-----VRALDF 414 (823)
T ss_pred HhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc--CCCCcH-----HHHHHH
Confidence 1111 00 011223446677888899999999899999999999999998 222222 235788
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 004992 382 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR 461 (720)
Q Consensus 382 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~ 461 (720)
|++++++....||..|..+|..|+.+-. +..+.++.++..+.
T Consensus 415 LvDMfNDE~~~VRL~ai~aL~~Is~~l~--------------------------------------i~eeql~~il~~L~ 456 (823)
T KOG2259|consen 415 LVDMFNDEIEVVRLKAIFALTMISVHLA--------------------------------------IREEQLRQILESLE 456 (823)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHhe--------------------------------------ecHHHHHHHHHHHH
Confidence 9999999999999999999999886521 12345677888888
Q ss_pred hcchhHHHHHHHHHHhhcC
Q 004992 462 VAEKGVQRRVALALAHLCS 480 (720)
Q Consensus 462 ~~~~~v~~~a~~~L~~l~~ 480 (720)
+.++++|.+.-..|++.--
T Consensus 457 D~s~dvRe~l~elL~~~~~ 475 (823)
T KOG2259|consen 457 DRSVDVREALRELLKNARV 475 (823)
T ss_pred hcCHHHHHHHHHHHHhcCC
Confidence 8899988887777766533
No 113
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.001 Score=66.26 Aligned_cols=238 Identities=18% Similarity=0.196 Sum_probs=177.5
Q ss_pred HHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-----Cc----chHHHHHHcCChHHHHH
Q 004992 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-----SP----NIKKEVLAAGALQPVIG 298 (720)
Q Consensus 228 ~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~-----~~----~~~~~~~~~~~l~~L~~ 298 (720)
+.-+..++. -|+....+++.++++.|+.+|.+++.++....+..+..|+.. +. .....+++.++++.|++
T Consensus 105 IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 105 IQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 344555664 778888888989999999999999999999999999998722 11 24456677889999998
Q ss_pred hhccCC------hHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHHHhhhhcCcchh
Q 004992 299 LLSSCC------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVITDMHNQ 370 (720)
Q Consensus 299 ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~ 370 (720)
-+..=+ ..-.......+-|+....+......++.|.+.+|+.-+.. .-..-...|...|.-+.+ ++.+++
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq--~s~e~~ 261 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQ--NSDENR 261 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc--cCchhh
Confidence 886322 2335567778889988888888888889999999886644 345667788888888888 344588
Q ss_pred hhhhhcCCHHHHHHHhc---CC------ChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHH
Q 004992 371 AGIAHNGGLVPLLKLLD---SK------NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 441 (720)
Q Consensus 371 ~~l~~~~~i~~l~~ll~---~~------~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~ 441 (720)
..+..-.++..+++-+. .. ..+...+....|+.+...+.++..+....+++.
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqL------------------- 322 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQL------------------- 322 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHH-------------------
Confidence 88888899999888661 12 235667788888888888999988888777663
Q ss_pred HHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc---cchhhhccCcHHHHHHhhc
Q 004992 442 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLG 502 (720)
Q Consensus 442 ~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~~~L~~ll~ 502 (720)
..++-......+..+.++|-....+++ ++..+++..|+..+..+.-
T Consensus 323 ---------------m~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 323 ---------------MNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred ---------------HHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 223333344557788889988877765 6777888888888876544
No 114
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.0021 Score=66.13 Aligned_cols=309 Identities=17% Similarity=0.131 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cC--hhhHHHHHH
Q 004992 80 AKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VK--PEHQQLIVD 155 (720)
Q Consensus 80 ~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~--~~~~~~~~~ 155 (720)
....++....+.. +++.+..+ .|.|-..+++.-. .|...+++.+..++ .+ ++.-+
T Consensus 244 ~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~e------------mV~lE~Ar~v~~~~~~nv~~~~~~---- 302 (898)
T COG5240 244 GVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFE------------MVFLEAARAVCALSEENVGSQFVD---- 302 (898)
T ss_pred heehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcch------------hhhHHHHHHHHHHHHhccCHHHHH----
Confidence 3344444444444 34444433 2556666666545 78888999888888 32 22222
Q ss_pred cCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004992 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (720)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (720)
..+..|-.+|+.... ..+-.|+++|..++...|..- .-+-+.+-.++.+.+..+...|...|..-.
T Consensus 303 -~~vs~L~~fL~s~rv--------~~rFsA~Riln~lam~~P~kv-----~vcN~evEsLIsd~Nr~IstyAITtLLKTG 368 (898)
T COG5240 303 -QTVSSLRTFLKSTRV--------VLRFSAMRILNQLAMKYPQKV-----SVCNKEVESLISDENRTISTYAITTLLKTG 368 (898)
T ss_pred -HHHHHHHHHHhcchH--------HHHHHHHHHHHHHHhhCCcee-----eecChhHHHHhhcccccchHHHHHHHHHcC
Confidence 246677778877766 788899999999997655321 123355666777888888888887776644
Q ss_pred cCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc-cCChHHHHHHHHH
Q 004992 236 FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALL 314 (720)
Q Consensus 236 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~ 314 (720)
.++....++.. ++.+++=+.++-.-+...|++.|+++. |.-... .+..|...|. .+..+.++.+..+
T Consensus 369 --t~e~idrLv~~--I~sfvhD~SD~FKiI~ida~rsLsl~F---p~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vda 436 (898)
T COG5240 369 --TEETIDRLVNL--IPSFVHDMSDGFKIIAIDALRSLSLLF---PSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDA 436 (898)
T ss_pred --chhhHHHHHHH--HHHHHHhhccCceEEeHHHHHHHHhhC---cHHHHH-----HHHHHHHHHHhcccchHHHHHHHH
Confidence 56666666553 666666666666666666666666663 432222 3455555543 4567788888888
Q ss_pred HHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHH
Q 004992 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 394 (720)
Q Consensus 315 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~ 394 (720)
|.......++.+... +..|+..+.+.. ..+.+++.|+-|... ++.... ....+..+.+-+--.|..+|
T Consensus 437 isd~~~~~p~skEra-----Le~LC~fIEDce--y~~I~vrIL~iLG~E--gP~a~~---P~~yvrhIyNR~iLEN~ivR 504 (898)
T COG5240 437 ISDAMENDPDSKERA-----LEVLCTFIEDCE--YHQITVRILGILGRE--GPRAKT---PGKYVRHIYNRLILENNIVR 504 (898)
T ss_pred HHHHHhhCchHHHHH-----HHHHHHHHhhcc--hhHHHHHHHHHhccc--CCCCCC---cchHHHHHHHHHHHhhhHHH
Confidence 888877666666543 566777776532 234455666666651 111110 11224444444444578899
Q ss_pred HHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHH
Q 004992 395 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 474 (720)
Q Consensus 395 ~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 474 (720)
..|..+|..++.+.+.. .....+...|-+++.+.+.+||..|..+
T Consensus 505 saAv~aLskf~ln~~d~-----------------------------------~~~~sv~~~lkRclnD~DdeVRdrAsf~ 549 (898)
T COG5240 505 SAAVQALSKFALNISDV-----------------------------------VSPQSVENALKRCLNDQDDEVRDRASFL 549 (898)
T ss_pred HHHHHHHHHhccCcccc-----------------------------------ccHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 99999998887654431 1112244456778899999999999999
Q ss_pred HHhhcCCc
Q 004992 475 LAHLCSPD 482 (720)
Q Consensus 475 L~~l~~~~ 482 (720)
|.++-...
T Consensus 550 l~~~~~~d 557 (898)
T COG5240 550 LRNMRLSD 557 (898)
T ss_pred HHhhhhhh
Confidence 99986443
No 115
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0002 Score=76.48 Aligned_cols=265 Identities=16% Similarity=0.123 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcch
Q 004992 51 ARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE 129 (720)
Q Consensus 51 ~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~ 129 (720)
-+.+..+..+.++...... |-+.+...---+.+.+.. |+.. .+++..++.=.+++++
T Consensus 43 ~G~DvSslF~dvvk~~~T~------dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np----------- 100 (734)
T KOG1061|consen 43 VGKDVSSLFPDVVKCMQTR------DLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNP----------- 100 (734)
T ss_pred cCcchHhhhHHHHhhcccC------CchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCH-----------
Confidence 3455666666666665554 555666666677777774 5532 3356666666666666
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCc
Q 004992 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (720)
Q Consensus 130 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (720)
.+|..|.+.++.+-.. . +......++.+.+++..+ .++..++-++.++-..+. +.....|.+
T Consensus 101 -~iR~lAlrtm~~l~v~-~-----i~ey~~~Pl~~~l~d~~~--------yvRktaa~~vakl~~~~~---~~~~~~gl~ 162 (734)
T KOG1061|consen 101 -LIRALALRTMGCLRVD-K-----ITEYLCDPLLKCLKDDDP--------YVRKTAAVCVAKLFDIDP---DLVEDSGLV 162 (734)
T ss_pred -HHHHHHhhceeeEeeh-H-----HHHHHHHHHHHhccCCCh--------hHHHHHHHHHHHhhcCCh---hhccccchh
Confidence 8998888888776622 1 123356788888888877 888888888888775443 456778999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHH
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~ 289 (720)
+.|..++.+.++.|..+|+.+|..+...++...........+..++..+...+..-+...+.++.+-....+...
T Consensus 163 ~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea----- 237 (734)
T KOG1061|consen 163 DALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREA----- 237 (734)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhH-----
Confidence 999999999999999999999999997444321111222245556666655566666555555555543322111
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 290 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
..++..+...+++.+..+...+..++.++...-+. ....+-..+-+.++.++.... +++..++.-+.-+..
T Consensus 238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 238 EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQ 308 (734)
T ss_pred HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHH
Confidence 23456677777777777777777777776642222 222233345667777666655 777777666665555
No 116
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.05 E-value=0.0022 Score=66.06 Aligned_cols=214 Identities=33% Similarity=0.373 Sum_probs=161.8
Q ss_pred CChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHH
Q 004992 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (720)
Q Consensus 104 g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (720)
..++.+..++.+.+. .+|..+++.++.+.. ...++.+..++.+.+. .++.
T Consensus 43 ~~~~~~~~~l~~~~~------------~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~--------~vr~ 92 (335)
T COG1413 43 EAADELLKLLEDEDL------------LVRLSAAVALGELGS----------EEAVPLLRELLSDEDP--------RVRD 92 (335)
T ss_pred hhHHHHHHHHcCCCH------------HHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCH--------HHHH
Confidence 367888899988866 899999988766652 2357899999998877 8899
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCC
Q 004992 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (720)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~ 262 (720)
.++.+|..+-. ...++.++.++. +++..+|..+.++|+.+-. ...+..++..+.+..
T Consensus 93 ~a~~aLg~~~~-----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~ 150 (335)
T COG1413 93 AAADALGELGD-----------PEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDED 150 (335)
T ss_pred HHHHHHHccCC-----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccch
Confidence 99987765432 235688888887 6899999999999999884 224777777777755
Q ss_pred H------------HHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHH
Q 004992 263 S------------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (720)
Q Consensus 263 ~------------~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 330 (720)
. .++..+...++.+- +...++.+...+.+....+|..++.+|..+...+
T Consensus 151 ~~~a~~~~~~~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------- 211 (335)
T COG1413 151 SGSAAAALDAALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------- 211 (335)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------
Confidence 1 45666666666662 1235678889999988999999999999997532
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 004992 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 402 (720)
Q Consensus 331 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~ 402 (720)
..+.+.+...+.+.+..+|..++.+|+.+-. ......+...+.+.++.++..+...+.
T Consensus 212 -~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 212 -VEAADLLVKALSDESLEVRKAALLALGEIGD-------------EEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred -hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc-------------chhHHHHHHHHhccchHHHHHHHHHhc
Confidence 3456888899999999999999999887665 235677778887777777666665555
No 117
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0017 Score=71.26 Aligned_cols=292 Identities=17% Similarity=0.190 Sum_probs=193.9
Q ss_pred HhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 75 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
.++.++..|+.++.-+..+.+....+++.|.+..|+.+|.+.. ..|..++.+|..|+.+++......
T Consensus 1784 ~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~P-------------S~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQP-------------SMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred CCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcCh-------------HHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4556899999999998888888899999999999999997743 578999999999999999999999
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcC---chhhHHHH----------hcCCcHHHHHhhcC--C
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN---SSIKTRVR----------MEGGIPPLVELLEF--T 219 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~----------~~~~i~~L~~ll~~--~ 219 (720)
.+|++..+..++.....+ ..+..++..+..+.... +..+-.++ ..+.-...+..+.. +
T Consensus 1851 ~hg~l~yil~~~c~~~~~-------QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSD-------QQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred hcCchhhhhHHHhccCcH-------HHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence 999999999998877664 78888999998887522 11111111 00122333444432 1
Q ss_pred C------HHHHHHHHHHHHHhccC-------Ch-------------------------hcHHHHHhC------------C
Q 004992 220 D------TKVQRAAAGALRTLAFK-------ND-------------------------ENKNQIVEC------------N 249 (720)
Q Consensus 220 ~------~~v~~~a~~~L~~L~~~-------~~-------------------------~~~~~i~~~------------g 249 (720)
+ +..+......+..++.+ ++ .++..+.+. +
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence 2 23333444444444321 11 011122222 1
Q ss_pred CHHHHHHhhcCCCH--HHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhh
Q 004992 250 ALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (720)
Q Consensus 250 ~l~~L~~ll~~~~~--~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (720)
.+..++.++...++ ........++..|....|.....+-.-|.+|.++..+...+..+-+.|+++|..++. +.-+..
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFCCD 2082 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHHHH
Confidence 23444455544433 233333445555556668777777778999999999887766677899999999975 567777
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCC
Q 004992 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSK 389 (720)
Q Consensus 328 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~ 389 (720)
.+.....+..++..++.. +...--|+.+|..+.... ..+......+.|.++.|+++|...
T Consensus 2083 AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~-~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRN-TGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHh-HHHHHHHHhccCcHHHHHHHhccc
Confidence 777777777788877653 333447888888887711 122234456788999999999653
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.00 E-value=3.5e-05 Score=74.54 Aligned_cols=183 Identities=19% Similarity=0.172 Sum_probs=117.9
Q ss_pred ccCChHHHHHHHHHHHHHhccC--cchhhHHHh--cCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhc
Q 004992 301 SSCCSESQREAALLLGQFAATD--SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHN 376 (720)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~ 376 (720)
.+.+|..|..++.-|..+..++ ......+.. ..++..+...+.+....+...|+.++..++...+ ..-.-.-.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~---~~~~~~~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG---SHFEPYAD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG---GGGHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---HhHHHHHH
Confidence 5678999999999999998765 222232322 2566778888888888999999999999998332 22221234
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhh-HHH
Q 004992 377 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV-LNH 455 (720)
Q Consensus 377 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 455 (720)
..++.|++.+.+.+..++..|..+|..+..+.... ..+ .+.
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~--------------------------------------~~~~~~~ 135 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS--------------------------------------PKILLEI 135 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----------------------------------------HHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH--------------------------------------HHHHHHH
Confidence 56888999999999999999999999998754411 112 445
Q ss_pred HHHHHHhcchhHHHHHHHHHHhhcCCcc-cchhhhc----cCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhcc
Q 004992 456 LLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFID----GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 524 (720)
Q Consensus 456 L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~----~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~~ 524 (720)
+.....+.++.+|..++..+..+..... ....+.. ...++.+..+++|++++||..|..++..+.+.-+
T Consensus 136 l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 136 LSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 6667788899999999999998865544 1222222 3467888899999999999999999999987643
No 119
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.0057 Score=67.36 Aligned_cols=303 Identities=17% Similarity=0.185 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHcc-ChhhHHHHHh----CCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHH
Q 004992 79 AAKRATHVLAELAK-NEEVVNWIVE----GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (720)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 153 (720)
-...++.+|.|+.. +|+....+.+ .|..+.+..++..... +.++..|+.++..+..+.++-..+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~-----------~~iq~LaL~Vi~~~Tan~~Cv~~~ 1809 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKH-----------PKLQILALQVILLATANKECVTDL 1809 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCC-----------chHHHHHHHHHHHHhcccHHHHHH
Confidence 46678999999887 5765444433 4777888888875433 279999999999888889999999
Q ss_pred HHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh-cCCCHHHHHHHHHHHH
Q 004992 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALR 232 (720)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~ 232 (720)
...|.+..|+.+|-+.. ..+..++.+|+.|++ +++......+.|++..+..++ .+..+..|..++..++
T Consensus 1810 a~~~vL~~LL~lLHS~P---------S~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLla 1879 (2235)
T KOG1789|consen 1810 ATCNVLTTLLTLLHSQP---------SMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLA 1879 (2235)
T ss_pred HhhhHHHHHHHHHhcCh---------HHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHH
Confidence 99999999988886542 678899999999998 566656667788888777665 5566899999999999
Q ss_pred HhccCChhc---HHHHHhC----------CCHHHHHHhhcC--CCH------HHHHHHHHHHHHhhc-------CCcc--
Q 004992 233 TLAFKNDEN---KNQIVEC----------NALPTLILMLRS--EDS------AIHYEAVGVIGNLVH-------SSPN-- 282 (720)
Q Consensus 233 ~L~~~~~~~---~~~i~~~----------g~l~~L~~ll~~--~~~------~v~~~a~~~L~nL~~-------~~~~-- 282 (720)
.+..+.-.+ +-.++.- ..-...++.+.. ++| ..+...-..+..+.. .++.
T Consensus 1880 Kl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~ 1959 (2235)
T KOG1789|consen 1880 KLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVK 1959 (2235)
T ss_pred HhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 998632211 1111110 011334444432 222 223222333333221 0110
Q ss_pred -----------------------hHHHHHH------------cCChHHHHHhhccCChH--HHHHHHHHHHHHhccCcch
Q 004992 283 -----------------------IKKEVLA------------AGALQPVIGLLSSCCSE--SQREAALLLGQFAATDSDC 325 (720)
Q Consensus 283 -----------------------~~~~~~~------------~~~l~~L~~ll~~~~~~--~~~~a~~~L~~l~~~~~~~ 325 (720)
.+..+.+ .++++.+++++...+++ .-..-..++..+.+..+..
T Consensus 1960 W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~L 2039 (2235)
T KOG1789|consen 1960 WNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNL 2039 (2235)
T ss_pred ccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcch
Confidence 0001111 12344555555544332 2222233444444556666
Q ss_pred hhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 004992 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 326 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (720)
...+-.-|.+|.++..+...+..+-..|++.|..|+. +.-+...+.....+..++..+... +....-|+.+|..+.
T Consensus 2040 ADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse---n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~ 2115 (2235)
T KOG1789|consen 2040 ADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE---NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLM 2115 (2235)
T ss_pred hhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh---ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHH
Confidence 6677777999999999977666666889999999998 777777777777777777777543 334457888888876
Q ss_pred c
Q 004992 406 D 406 (720)
Q Consensus 406 ~ 406 (720)
.
T Consensus 2116 ~ 2116 (2235)
T KOG1789|consen 2116 K 2116 (2235)
T ss_pred H
Confidence 4
No 120
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.00015 Score=75.46 Aligned_cols=220 Identities=15% Similarity=0.144 Sum_probs=147.3
Q ss_pred hHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCc-----hhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHH
Q 004992 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (720)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (720)
....++++++... .|+..|+..+.-.....+ +..+.-....++..+...+++.+..||..|+.+|+.
T Consensus 236 Y~~A~~~lsD~~e--------~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 236 YSRAVKHLSDDYE--------DVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGE 307 (823)
T ss_pred HHHHHHHhcchHH--------HHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhch
Confidence 5667777877776 888888666555443221 111111122456777888889999999999999998
Q ss_pred hccCChhcHHHHHhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHh--h-----------cCCcchHHHHHHcCChHHHHHh
Q 004992 234 LAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNL--V-----------HSSPNIKKEVLAAGALQPVIGL 299 (720)
Q Consensus 234 L~~~~~~~~~~i~~~g~l~~L~~ll-~~~~~~v~~~a~~~L~nL--~-----------~~~~~~~~~~~~~~~l~~L~~l 299 (720)
+..-+++......+..++..+-..- ..+.+ -....+- + ...++....++..|.-..++.-
T Consensus 308 ~~~vSee~i~QTLdKKlms~lRRkr~ahkrp------k~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhG 381 (823)
T KOG2259|consen 308 FEQVSEEIIQQTLDKKLMSRLRRKRTAHKRP------KALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHG 381 (823)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhhhcccch------HHHHhcCCcccCccccccCchhhccccccccccccccceeeee
Confidence 8764444444444433333211100 00011 0111111 0 0012233556778888889999
Q ss_pred hccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCH
Q 004992 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGL 379 (720)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i 379 (720)
+.+.-.++|++|...+..|+...+..... .+..|++++.+....+|..|+.+|..++. . .-.+...+
T Consensus 382 lEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~---~-----l~i~eeql 448 (823)
T KOG2259|consen 382 LEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISV---H-----LAIREEQL 448 (823)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHH---H-----heecHHHH
Confidence 99888999999999999999876766543 47899999999999999999999999998 2 12234457
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcc
Q 004992 380 VPLLKLLDSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 380 ~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (720)
+.+...|.+.+.++|.+....|.+.-
T Consensus 449 ~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 449 RQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 88899999999999998888887753
No 121
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.93 E-value=0.00028 Score=78.47 Aligned_cols=285 Identities=18% Similarity=0.057 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhc---CchhhHHHHhcC
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE---NSSIKTRVRMEG 207 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~ 207 (720)
..+..|+..|..++ ....+...-..++|.++.++.++.. .|+..|+..|..+... -+.....+.-+-
T Consensus 438 ~tK~~ALeLl~~lS--~~i~de~~LDRVlPY~v~l~~Ds~a--------~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY 507 (1431)
T KOG1240|consen 438 QTKLAALELLQELS--TYIDDEVKLDRVLPYFVHLLMDSEA--------DVRATALETLTELLALVRDIPPSDANIFPEY 507 (1431)
T ss_pred hhHHHHHHHHHHHh--hhcchHHHHhhhHHHHHHHhcCchH--------HHHHHHHHHHHHHHhhccCCCcccchhhHhh
Confidence 67888999999998 1111222234578999999999888 9999999988887642 222233344456
Q ss_pred CcHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 004992 208 GIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (720)
Q Consensus 208 ~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~ 286 (720)
.+|.|-.++.+ ....+|..-+..|..|+. ...+- .+.+--.....++++++.+ ...+. ..+.+ .+.
T Consensus 508 lfP~L~~l~~d~~~~~vRiayAsnla~LA~--tA~rF--le~~q~~~~~g~~n~~nse-------t~~~~-~~~~~-~~~ 574 (1431)
T KOG1240|consen 508 LFPHLNHLLNDSSAQIVRIAYASNLAQLAK--TAYRF--LELTQELRQAGMLNDPNSE-------TAPEQ-NYNTE-LQA 574 (1431)
T ss_pred hhhhhHhhhccCccceehhhHHhhHHHHHH--HHHHH--HHHHHHHHhcccccCcccc-------ccccc-ccchH-HHH
Confidence 77888888888 557788888888888884 11111 1110111111233443333 00011 01111 111
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcC
Q 004992 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITD 366 (720)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (720)
...++-.....++.++++-+++.-+..|.-||.. +.+.=.+.-+++.|+..|.+.++.+|.+-...+.-++-..|
T Consensus 575 -L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F---FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG- 649 (1431)
T KOG1240|consen 575 -LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF---FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG- 649 (1431)
T ss_pred -HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH---hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe-
Confidence 1223445667778888888888888888888742 22222223467899999999999999876666665554221
Q ss_pred cchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHH
Q 004992 367 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 446 (720)
Q Consensus 367 ~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~ 446 (720)
..-++.+.+|.|.+-+.++.+.|...|+.+|.-|+... .+++
T Consensus 650 ----~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~----------ll~K------------------------ 691 (1431)
T KOG1240|consen 650 ----WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG----------LLRK------------------------ 691 (1431)
T ss_pred ----eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc----------ccch------------------------
Confidence 22245677888999999999999999999998877532 1111
Q ss_pred hhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCC
Q 004992 447 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 481 (720)
Q Consensus 447 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 481 (720)
..-.++++-...++-.++.-+|..++..+...+..
T Consensus 692 ~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 692 PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 11122455566677788888999998888777553
No 122
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0015 Score=74.72 Aligned_cols=324 Identities=15% Similarity=0.102 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~ 259 (720)
.-+..|+.-+..++....+ +..-.-...+|.|.+.=.+++..|+.+-..+=..|..+.....+.... .++.-|+.-+.
T Consensus 972 nSk~GaAfGf~~i~~~a~~-kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt 1049 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGE-KLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLT 1049 (1702)
T ss_pred hcccchhhchHHHHHHHHH-hhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhcc
Confidence 4456677777777653211 111122346788888878999999875555444555433333333333 37778888888
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchHHHHHH--cCChHHHHHhhccCChHHHHH---HHHHHHHHhcc--Ccch---hhHH
Q 004992 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQRE---AALLLGQFAAT--DSDC---KVHI 329 (720)
Q Consensus 260 ~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~~---a~~~L~~l~~~--~~~~---~~~~ 329 (720)
+..-.||+.++.+|..|..+.+.. .+.+ ...+..+...+++-...+|+. ++.+|..++.. +..+ ...+
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence 888999999999999998775542 2221 234455555555555666665 45566665521 1111 1111
Q ss_pred HhcCChHHHHHH-hcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHH-HHHHHHHHhcccC
Q 004992 330 VQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ-HNAAFALYGLADN 407 (720)
Q Consensus 330 ~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~-~~a~~~L~~l~~~ 407 (720)
. ..++|.|++- +.+..+++|..++..+..|+...+ ..-.-.-...++.|.+....-.+.+. ..++.+ .++.
T Consensus 1128 l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg---~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e-- 1200 (1702)
T KOG0915|consen 1128 L-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG---KELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIE-- 1200 (1702)
T ss_pred H-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch---hhhcchhhHHHHHHHHHccccchHHHHHHHHhh-hhhH--
Confidence 1 2344544432 235678999999999999998332 21111123456667776665544432 223333 1111
Q ss_pred CCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc-chhHHHHHHHHHHhhcCCcccch
Q 004992 408 EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRT 486 (720)
Q Consensus 408 ~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 486 (720)
. .++..+........+..+-+...+.++..-.-.+++|.+.++++.+ .-..|..++..++.|+..-...-
T Consensus 1201 ---~------ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~em 1271 (1702)
T KOG0915|consen 1201 ---T------EALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEM 1271 (1702)
T ss_pred ---H------HHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcccc
Confidence 0 0111100000011111122223334444455667899999999987 55778888888887754422222
Q ss_pred hhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 487 IFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 487 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.......+..+.....+.++.++..-+.|+..|++-+
T Consensus 1272 tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1272 TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 2233344678888888999999999999999998753
No 123
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.90 E-value=0.0004 Score=73.51 Aligned_cols=276 Identities=18% Similarity=0.164 Sum_probs=177.6
Q ss_pred HHHHhhhcCchhhHHHHhcCCcHHHHHhh----------cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHh
Q 004992 188 AITNLAHENSSIKTRVRMEGGIPPLVELL----------EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (720)
Q Consensus 188 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----------~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~l 257 (720)
+|..+.. ++.....+....++..|..+- ...++.+...|++||+|+...++..++.+.+.|..+.++..
T Consensus 4 ~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 4 TLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred HHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 3444444 333333444444555555444 34568999999999999999999999999999999999999
Q ss_pred hcCC-----CHHHHHHHHHHHHHhhcCCcchHHHHHHc-CChHHHHHhhcc-----------------CChHHHHHHHHH
Q 004992 258 LRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS-----------------CCSESQREAALL 314 (720)
Q Consensus 258 l~~~-----~~~v~~~a~~~L~nL~~~~~~~~~~~~~~-~~l~~L~~ll~~-----------------~~~~~~~~a~~~ 314 (720)
++.. +.++.-...++|--++......+..+++. +++..+...+.. .+.....+++.+
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl 162 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL 162 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence 9876 67888888888888887777777777665 677777776641 023346677888
Q ss_pred HHHHhccCcchhhHHHhcCChHHHHHHhc---------CCCHHHHHHHHHHHHHHhhhhcCcch-------hh----hhh
Q 004992 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQ---------SPDVQLREMSAFALGRLAQVITDMHN-------QA----GIA 374 (720)
Q Consensus 315 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~~~~-------~~----~l~ 374 (720)
+.|++...+.... -...+.++.++..+. .+......+++.+|.|+-.. .... .. ...
T Consensus 163 lFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 163 LFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE--CLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH--HHhhhhcccCCcccccCCCC
Confidence 8899765544332 011223344443322 13346778888888877420 0000 00 111
Q ss_pred hcCCHHHHHHHhcC-----CC---hhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHH
Q 004992 375 HNGGLVPLLKLLDS-----KN---GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 446 (720)
Q Consensus 375 ~~~~i~~l~~ll~~-----~~---~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~ 446 (720)
....+..++++|.. .. .+...-.+.+|.+++......+..++..++|.+.+-... .
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~----------------~ 303 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKP----------------P 303 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccC----------------C
Confidence 22335566666631 11 234455667788887776777777777777775431110 0
Q ss_pred hhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc
Q 004992 447 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 483 (720)
Q Consensus 447 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 483 (720)
.....+-.+|++++.++.+.++..++..|..||...-
T Consensus 304 e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 304 EKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred CCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 1134577789999999999999999999999986654
No 124
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.89 E-value=2.2e-05 Score=51.93 Aligned_cols=40 Identities=40% Similarity=0.643 Sum_probs=37.7
Q ss_pred ChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 004992 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 238 ~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~ 277 (720)
++++++.+++.|++|.|+.+|+++++++++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999996
No 125
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.89 E-value=7.7e-05 Score=68.99 Aligned_cols=94 Identities=29% Similarity=0.455 Sum_probs=80.4
Q ss_pred EEEEECCeEEehhHHHHhhcchhHhhcccCCcC--CCCCCceecCCCCHHHHHHHHHHHhcCCcccCh--hhHHHHHHHH
Q 004992 555 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL--DIAQDLLRAA 630 (720)
Q Consensus 555 v~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~--~~~~~ll~~A 630 (720)
+.+.+||..|..++.-|.-...||++|+.+++. -..++.|-+ |=+|.-|+.+|.||-.|.+.++. ..+.+|+.=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 557889999999999999999999999998873 334456766 56899999999999988888655 5577999999
Q ss_pred hhhChHHHHHHHHHHHHhc
Q 004992 631 DQYLLEGLKRLCEYTIAQD 649 (720)
Q Consensus 631 ~~~~~~~l~~~c~~~l~~~ 649 (720)
.+|.+++|.+.|...+...
T Consensus 86 ~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHhhHHHHHHHHHHHhhhc
Confidence 9999999999999987765
No 126
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0016 Score=68.61 Aligned_cols=271 Identities=14% Similarity=0.165 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (720)
.....|+.+++|+... +++..+. +-+-++|.+.+... -++..|+-||..|-...++.. ...+...
T Consensus 126 ~fv~LAL~~I~niG~r-e~~ea~~-----~DI~KlLvS~~~~~------~vkqkaALclL~L~r~spDl~---~~~~W~~ 190 (938)
T KOG1077|consen 126 TFVCLALHCIANIGSR-EMAEAFA-----DDIPKLLVSGSSMD------YVKQKAALCLLRLFRKSPDLV---NPGEWAQ 190 (938)
T ss_pred HHHHHHHHHHHhhccH-hHHHHhh-----hhhHHHHhCCcchH------HHHHHHHHHHHHHHhcCcccc---ChhhHHH
Confidence 6677788888888732 2333322 23336666555432 788888888888887666432 2235678
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc-------------CCCHHHHHHHHHHHHHhh
Q 004992 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-------------SEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~-------------~~~~~v~~~a~~~L~nL~ 277 (720)
.++.+|.+.+..|..++...+..|+..+++........ .+..|..+.. -+.|-++..++++|.++-
T Consensus 191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p 269 (938)
T KOG1077|consen 191 RIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP 269 (938)
T ss_pred HHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence 99999999988888888888888887666553322211 2333333221 145677878888888873
Q ss_pred cC-CcchHHHHHHcCChHHHHHhhccCC-------hHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHH
Q 004992 278 HS-SPNIKKEVLAAGALQPVIGLLSSCC-------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (720)
Q Consensus 278 ~~-~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 349 (720)
.- ++..+..+ ...+..++...+.+. ...+...++-..+++...+.....+. ..+..|-+++.+....+
T Consensus 270 ~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~Ni 345 (938)
T KOG1077|consen 270 TPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNI 345 (938)
T ss_pred CCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccc
Confidence 21 11222222 224444554444221 11233334434445433322222222 35788888999999999
Q ss_pred HHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc-CCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhh
Q 004992 350 REMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF 428 (720)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~ 428 (720)
|.-|+..++.|+. .......+... .+.++..|+ .++..+|+.++..|..+|.. ++...+++ +.++.|...++
T Consensus 346 RYLaLEsm~~L~s---s~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~IV~-elLqYL~tAd~ 418 (938)
T KOG1077|consen 346 RYLALESMCKLAS---SEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQIVA-ELLQYLETADY 418 (938)
T ss_pred hhhhHHHHHHHHh---ccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHHHH-HHHHHHhhcch
Confidence 9999999999998 43333333332 777888887 78999999999999999953 44444443 45555544333
No 127
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.80 E-value=0.0024 Score=67.72 Aligned_cols=274 Identities=18% Similarity=0.174 Sum_probs=167.6
Q ss_pred HHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHH
Q 004992 84 THVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHL 162 (720)
Q Consensus 84 ~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L 162 (720)
+.+|.-+++++.....+....++..|+.+-.-... ........++.+...|+++|.|+. .++..|..+.+.|..+.+
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~--~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSES--DEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCccc--ccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 45566666666666666666666666655411110 000111224489999999999999 999999999999999999
Q ss_pred HHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhc-CCcHHHHHhhc----------C-------CCHHHH
Q 004992 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLE----------F-------TDTKVQ 224 (720)
Q Consensus 163 ~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~----------~-------~~~~v~ 224 (720)
+..|+...+..... ++.-...++|.-++......+..+++. +++..+...+. . .+....
T Consensus 80 ~~~Lk~~~~~~~~~---d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l 156 (446)
T PF10165_consen 80 CERLKNYSDSSQPS---DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL 156 (446)
T ss_pred HHHHHcccccCCCh---hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH
Confidence 99999874321111 777778888877776666666555554 67777766552 0 135667
Q ss_pred HHHHHHHHHhccCChhcHH-HHHh--CCCHHHHHHhh---cC--CCHHHHHHHHHHHHHhhcCCcch-------HHH---
Q 004992 225 RAAAGALRTLAFKNDENKN-QIVE--CNALPTLILML---RS--EDSAIHYEAVGVIGNLVHSSPNI-------KKE--- 286 (720)
Q Consensus 225 ~~a~~~L~~L~~~~~~~~~-~i~~--~g~l~~L~~ll---~~--~~~~v~~~a~~~L~nL~~~~~~~-------~~~--- 286 (720)
..+++++.|++...+.... .... ..++..+..++ .. +.......++.+|.|+-...... ...
T Consensus 157 ~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~ 236 (446)
T PF10165_consen 157 SEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP 236 (446)
T ss_pred HHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC
Confidence 7889999999864444332 1111 11333444442 11 23367788888888882111110 000
Q ss_pred -HHHcCChHHHHHhhccC----C----hHHHHHHHHHHHHHhccCcchhhHHHh----------------cCChHHHHHH
Q 004992 287 -VLAAGALQPVIGLLSSC----C----SESQREAALLLGQFAATDSDCKVHIVQ----------------RGAVRPLIEM 341 (720)
Q Consensus 287 -~~~~~~l~~L~~ll~~~----~----~~~~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~~~~L~~l 341 (720)
......+..|+.+|... . .+...-.+.+|.+++..+...+..+.. ..+-..|+.+
T Consensus 237 ~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrL 316 (446)
T PF10165_consen 237 EGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRL 316 (446)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHH
Confidence 01122455666666421 1 234445666777777654443333321 2455788899
Q ss_pred hcCCCHHHHHHHHHHHHHHhh
Q 004992 342 LQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~ 362 (720)
+.+..+.++..+...|..||.
T Consensus 317 mt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 317 MTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred hCCCCchHHHHHHHHHHHHHh
Confidence 988889999999999999997
No 128
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.79 E-value=0.0023 Score=61.06 Aligned_cols=263 Identities=12% Similarity=0.115 Sum_probs=155.3
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC--ChHHHHHHHHHHHHHhccCcchhhHHHh-c
Q 004992 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQ-R 332 (720)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~ 332 (720)
++++.-++-.+..|+.++.++....+.......+...-..++.++++. ...++...+.+++-++. ++.+.+.+-. .
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~ 234 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 444444666788899999999766443333444455556777777754 46788889999998874 4454433222 2
Q ss_pred CChHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcC---CChhHHHHHHHHHHhcccCC
Q 004992 333 GAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDS---KNGSLQHNAAFALYGLADNE 408 (720)
Q Consensus 333 ~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~---~~~~v~~~a~~~L~~l~~~~ 408 (720)
..+.-++++.+. ....+-+-+++.+.|++.+. +...-....-.|-+...++.|.. .+.+++...-.+=..|-.+.
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~-pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKS-PKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 456666676665 45677788888888888721 11111222223334444555532 35555554433333332222
Q ss_pred CchhHHHhhcccccccchh---hhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhH-HHHHHHHHHhhc-CCcc
Q 004992 409 DNVADFIRVGGVQKLQDGE---FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGV-QRRVALALAHLC-SPDD 483 (720)
Q Consensus 409 ~~~~~l~~~~~v~~L~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v-~~~a~~~L~~l~-~~~~ 483 (720)
.....+- ..+..|-++. ...+...+...+++..+ ..-...++..|.++++..++++ -..|+.-+..+. ..++
T Consensus 314 k~l~~fD--~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l-~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 314 KKLCIFD--NYLNELDSGRLEWSPYHHKKDFWSTNLDML-IKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhHHH--HHHHHHhhCcccCCCcccccCchhhhHHHH-hhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 2111110 1111111111 11222233334444433 2235568899999999988873 334555555554 3566
Q ss_pred cchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 484 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 484 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
....+...|+-..+.+|++++|++|++.|..++..+....
T Consensus 391 ~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~~ 430 (432)
T COG5231 391 INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISSE 430 (432)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhhh
Confidence 7778888999999999999999999999999998877543
No 129
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.77 E-value=0.00046 Score=66.70 Aligned_cols=179 Identities=17% Similarity=0.149 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHHHhhhcC--chhhHHHHh--cCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHH
Q 004992 178 VNSVIRRAADAITNLAHEN--SSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (720)
Q Consensus 178 ~~~v~~~a~~~L~~l~~~~--~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~ 253 (720)
+|+.+..++..|..++.++ ......+.. ...+..+...+.+....+...|+.++..++..-...-+...+ .++|.
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~ 98 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPP 98 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHH
Confidence 4788999999999998766 222222211 145566777777777889999999999999633333333433 37999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHh--
Q 004992 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-- 331 (720)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-- 331 (720)
|++.+.+.+..++..|..+|..+....+.. ..+ .++.+...+.+.++.+|..++..+..+....+.....+..
T Consensus 99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 99 LLKKLGDSKKFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHGGG---HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 999999999999999999999998654411 111 1566777788889999999999999887544311111111
Q ss_pred --cCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 332 --RGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 332 --~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
..+++.+...+.+.++++|..|-.++..+..
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 3477888899999999999999999999987
No 130
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.051 Score=60.81 Aligned_cols=257 Identities=17% Similarity=0.189 Sum_probs=156.8
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCC-hHHHHHHHHHHHHHhccCcchhh
Q 004992 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKV 327 (720)
Q Consensus 249 g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~ 327 (720)
+++..|...+++.+..||-.|+.-++.++...|. . ....++..+++++...+ +.....++-+|+.++...--...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---E-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---H-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4678888888999999999999999999877662 2 23346666777665443 66777899999999853211111
Q ss_pred HHHhcCChHHHHHHhc--------CCCHHHHHHHHHHHHHHhhhhcCcchh-hhhhhcCCHHHHHHHhcCCChhHHHHHH
Q 004992 328 HIVQRGAVRPLIEMLQ--------SPDVQLREMSAFALGRLAQVITDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAA 398 (720)
Q Consensus 328 ~~~~~~~~~~L~~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~l~~~~~i~~l~~ll~~~~~~v~~~a~ 398 (720)
.+ ..++|.++..+. +....||.+|+.+++.++. ++...- ..+...-.-..+...+-+++-.+|++|.
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~R--ays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFAR--AYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHh--cCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 11 235677776663 2345799999999999998 222221 1122222222344555778889999999
Q ss_pred HHHHhcccCCCchhHHHhhcccccccchhhhhhhhH-HHHHHHHHHHHHh--hhhhhHHHHHHH-HHhcchhHHHHHHHH
Q 004992 399 FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK-DCVAKTLKRLEEK--IHGRVLNHLLYL-MRVAEKGVQRRVALA 474 (720)
Q Consensus 399 ~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~-~~~~~~~~~l~~~--~~~~~~~~L~~l-l~~~~~~v~~~a~~~ 474 (720)
.|+.....-..+. ..|++.+...++-.-..+ .|-......+... ....++..++.. +.+=++.+|+.++++
T Consensus 493 AAlqE~VGR~~n~-----p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 493 AALQENVGRQGNF-----PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred HHHHHHhccCCCC-----CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 8887765432221 123333333333222222 3333322222221 133344444433 344488999999999
Q ss_pred HHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHh
Q 004992 475 LAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 475 L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~ 521 (720)
|.+|+.... .....+.+|.|+....+++...|.-+..+...+.-
T Consensus 568 L~~Ls~~~p---k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 568 LHKLSLTEP---KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHhhH---HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 999865532 22345678899988888888877766655555543
No 131
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.70 E-value=4.8e-05 Score=50.32 Aligned_cols=40 Identities=45% Similarity=0.667 Sum_probs=36.5
Q ss_pred ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc
Q 004992 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144 (720)
Q Consensus 93 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~ 144 (720)
+++++..+++.|++|.|+++|++.+. ++++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~------------~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDP------------EVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSH------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCH------------HHHHHHHHHHHHHh
Confidence 36788999999999999999997777 99999999999997
No 132
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.68 E-value=0.0078 Score=63.70 Aligned_cols=366 Identities=20% Similarity=0.168 Sum_probs=198.6
Q ss_pred hHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHH
Q 004992 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (720)
Q Consensus 106 i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a 185 (720)
+|.++..|.+..... ..-.+.++.+|..+|.++..-..+.. ..+..+-..++...+. +....+
T Consensus 1 ~p~ll~~Lpd~~~~~---------~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~-------~~~~~i 63 (415)
T PF12460_consen 1 LPALLALLPDSDSST---------DSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSS-------DYCHAI 63 (415)
T ss_pred CchHHhhCCCCCCcc---------hhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCCh-------HHHHHH
Confidence 366777776654421 14567899999999977776555443 3444444444333221 666777
Q ss_pred HHHHHHhhhcCchhh-----HHHHhcCCcHHHHHhhcC-----C--CHHHHHHHHHHHHHhccCC-hhcHHHHHhCCCHH
Q 004992 186 ADAITNLAHENSSIK-----TRVRMEGGIPPLVELLEF-----T--DTKVQRAAAGALRTLAFKN-DENKNQIVECNALP 252 (720)
Q Consensus 186 ~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~~-----~--~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~l~ 252 (720)
+.++.++........ ....+..+++.++++.-. . ++.+...+..++..+...- .+.++.+.+. +..
T Consensus 64 l~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~-~~~ 142 (415)
T PF12460_consen 64 LSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDE-LYS 142 (415)
T ss_pred HHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHH
Confidence 888887765333222 222333467777766522 1 2566666666666666532 3333334332 333
Q ss_pred HHHH-----hhc-CC------CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC-ChHHHHHHHHHHHHHh
Q 004992 253 TLIL-----MLR-SE------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFA 319 (720)
Q Consensus 253 ~L~~-----ll~-~~------~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~ 319 (720)
.+.. -+. +. ......-...+++.+- ++..-. ....++..++.+..+. ++..+..++..++.+.
T Consensus 143 lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~Lv 218 (415)
T PF12460_consen 143 LFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLR---KDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLV 218 (415)
T ss_pred HHccccccCCCCccccccccccccHHHHHHHHHHcCC---cccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 3330 000 11 1112222233444442 221111 1122667777776544 5778888888888887
Q ss_pred ccCcchhhHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHHHhhhh--cCcchhhhhhhcCCHHHHHHHhcCCChhHHHH
Q 004992 320 ATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVI--TDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 396 (720)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~ 396 (720)
...+... .. ..++..+...+ ...+...+..+...+.-++..- ++.... ...+..+++++.+ +.+...
T Consensus 219 NK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~--~~~g~~ 288 (415)
T PF12460_consen 219 NKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS--PELGQQ 288 (415)
T ss_pred cCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC--hhhHHH
Confidence 5311111 11 12333333333 2334444444444444443300 122111 2235667777766 777888
Q ss_pred HHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHH
Q 004992 397 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 476 (720)
Q Consensus 397 a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~ 476 (720)
++.++.-+..+.+..-.-.....+..|-+ ..+=..++|.|++..+..+.+.+.....+|.
T Consensus 289 aA~~f~il~~d~~~~l~~~~~a~vklLyk--------------------QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 289 AAKAFGILLSDSDDVLNKENHANVKLLYK--------------------QRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHhhHhcCcHHhcCccccchhhhHHh--------------------HHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 88888888765222111111111222111 1112346778888888877778999999999
Q ss_pred hhcCCcccchhhhc-cCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 477 HLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 477 ~l~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
++..+-.....+-+ ...+|.|++-+..++++++..+..+|..+..+.
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 99876553333222 346889999999999999999999999998764
No 133
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.01 Score=62.77 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=72.8
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCcchHHH
Q 004992 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED--SAIHYEAVGVIGNLVHSSPNIKKE 286 (720)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~--~~v~~~a~~~L~nL~~~~~~~~~~ 286 (720)
+..+..-|.+.|+.....|+.+++|+. ..+.++.+... ++ ++|.+++ +-|++.++-++..|-..+|+...
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG--~re~~ea~~~D--I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~- 184 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIG--SREMAEAFADD--IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN- 184 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhc--cHhHHHHhhhh--hH---HHHhCCcchHHHHHHHHHHHHHHHhcCccccC-
Confidence 455556666778888889999999998 45665555443 33 6665543 46788888888888777775422
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCc
Q 004992 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (720)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 323 (720)
-.+....++.+|.+.+..+...+...+-.++..++
T Consensus 185 --~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 185 --PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred --hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 23567888999988877777777777777765443
No 134
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.65 E-value=0.00015 Score=57.95 Aligned_cols=86 Identities=34% Similarity=0.438 Sum_probs=69.8
Q ss_pred cHHHHHhh-cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHH
Q 004992 209 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (720)
Q Consensus 209 i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~ 287 (720)
++.|++.+ +++++.+|..++.+|+.+.. ..+++.|+.+++++++.||..++++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 47788888 88999999999999996642 135999999999999999999999999882
Q ss_pred HHcCChHHHHHhhccCC-hHHHHHHHHHHH
Q 004992 288 LAAGALQPVIGLLSSCC-SESQREAALLLG 316 (720)
Q Consensus 288 ~~~~~l~~L~~ll~~~~-~~~~~~a~~~L~ 316 (720)
....++.|..++.+++ ..++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2337889999888764 556888888774
No 135
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.012 Score=67.86 Aligned_cols=407 Identities=17% Similarity=0.158 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHH-HccChh-hHHHHHhCCChHHHHHhhcCCCCcccccCCCcch
Q 004992 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAE-LAKNEE-VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE 129 (720)
Q Consensus 52 ~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~-l~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~ 129 (720)
++......+.++..|-+.-= |+|..++. |...+-+ +..++. ..+... ..++.-|+.-|.+..|
T Consensus 989 ~~kl~p~l~kLIPrLyRY~y--DP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kew----------- 1053 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLYRYQY--DPDKKVQD-AMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEW----------- 1053 (1702)
T ss_pred HHhhhhHHHHhhHHHhhhcc--CCcHHHHH-HHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhH-----------
Confidence 34455566667777766521 24554554 4444444 454533 323322 3466667777777777
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHHc--CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhc--Cchh--hHHH
Q 004992 130 HEVEKGSAFALGLLAVKPEHQQLIVDN--GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE--NSSI--KTRV 203 (720)
Q Consensus 130 ~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~--~~~~--~~~~ 203 (720)
+||+.++-+|..|...++.-+. .+. .....+.+.+.+-... .+ +.-..++..|..+|-. +..+ ...-
T Consensus 1054 -RVReasclAL~dLl~g~~~~~~-~e~lpelw~~~fRvmDDIKEs--VR---~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1054 -RVREASCLALADLLQGRPFDQV-KEKLPELWEAAFRVMDDIKES--VR---EAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred -HHHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 9999999999999944333221 111 1223333333332220 01 3334455666666621 1111 1111
Q ss_pred HhcCCcHHHHH--hhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHH-HHHHHHHh----
Q 004992 204 RMEGGIPPLVE--LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE-AVGVIGNL---- 276 (720)
Q Consensus 204 ~~~~~i~~L~~--ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~-a~~~L~nL---- 276 (720)
.-..++|.|+. .+ +.-+++|..++.++..|+........-. -...+|.|+.....-++.|... ++++ .|.
T Consensus 1127 ~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ea 1203 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEPQVLNYLSLRL-INIETEA 1203 (1702)
T ss_pred HHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccchHHHHHHHHhh-hhhHHHH
Confidence 11123444432 12 4458999999999999996332211111 1346777777776655544322 2222 222
Q ss_pred --------hcCCcchH--HHH-------HHcCChHHHHHhhccC-ChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHH
Q 004992 277 --------VHSSPNIK--KEV-------LAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (720)
Q Consensus 277 --------~~~~~~~~--~~~-------~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 338 (720)
+.++|... ... +-...+|.+.+++..+ .-..+..++..+.-++.....-...+ ...++..+
T Consensus 1204 lDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~al 1282 (1702)
T KOG0915|consen 1204 LDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRAL 1282 (1702)
T ss_pred HHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHHH
Confidence 11222100 000 0122455555555543 23445566666666653211111111 12356777
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhc
Q 004992 339 IEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 418 (720)
Q Consensus 339 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 418 (720)
+..+++.++.+++.-..+.+.|+.....+..+. .+..++..+..+.+.....++.++.+++.+... ++.
T Consensus 1283 ~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qK------Lie~~l~~~l~k~es~~siscatis~Ian~s~e---~Lk-- 1351 (1702)
T KOG0915|consen 1283 FPGAKDRNESVRKAFASAMGYLAKFSSPDQMQK------LIETLLADLLGKDESLKSISCATISNIANYSQE---MLK-- 1351 (1702)
T ss_pred hhccccccHHHHHHHHHHHHHHHhcCChHHHHH------HHHHHHHHHhccCCCccchhHHHHHHHHHhhHH---HHH--
Confidence 777889999999999999999998332222222 234444433333333346677777776644321 111
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHH
Q 004992 419 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 498 (720)
Q Consensus 419 ~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~ 498 (720)
...+.++|...--+...+.+.+..=-.....+.....+...+.....+-.+.
T Consensus 1352 ----------------------------n~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~ic 1403 (1702)
T KOG0915|consen 1352 ----------------------------NYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLIC 1403 (1702)
T ss_pred ----------------------------hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHH
Confidence 1122233322222222223333333334444555544443333444444444
Q ss_pred H-hhcCCCchhhhhHHHHHHHHHhhc
Q 004992 499 G-LLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 499 ~-ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
. .+++..-.++..++.++..++...
T Consensus 1404 eni~nn~~w~lr~q~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1404 ENITNNESWKLRKQAAKAIRVIAEGL 1429 (1702)
T ss_pred HHhccchHHHHHHHHHHHHHHHcccc
Confidence 3 333344558888888888887644
No 136
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.0046 Score=57.73 Aligned_cols=195 Identities=23% Similarity=0.245 Sum_probs=132.3
Q ss_pred cCCcHHHHHhhcCCC--HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 004992 206 EGGIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (720)
Q Consensus 206 ~~~i~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~ 283 (720)
...++.++..+.+.+ +.||..|..+|..+.. ...++.+-+..+++...|++.+..++..+-..+...
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 457888988887654 8888999999998873 346777777777777788887777777764221111
Q ss_pred H-----HHH-------HHcCChHHHHHhhccCC-hH-HHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHH
Q 004992 284 K-----KEV-------LAAGALQPVIGLLSSCC-SE-SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (720)
Q Consensus 284 ~-----~~~-------~~~~~l~~L~~ll~~~~-~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 349 (720)
. ... ...+-+.-+-..+.+.+ +. -|..+.+.|.|+-. + ..+..+.+-+..++.-.
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADDSALF 203 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccchHHH
Confidence 0 000 01112333444443332 22 24456666666631 1 23566777788888999
Q ss_pred HHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc--CCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchh
Q 004992 350 REMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD--SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE 427 (720)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~ 427 (720)
|..++.++++|-. ...++.+.+.|. ..++-+|..|+.+|+.++...
T Consensus 204 rhEvAfVfGQl~s-------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~------------------- 251 (289)
T KOG0567|consen 204 RHEVAFVFGQLQS-------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED------------------- 251 (289)
T ss_pred HHHHHHHHhhccc-------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-------------------
Confidence 9999999998876 346888888774 357889999999999998532
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhh
Q 004992 428 FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 478 (720)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 478 (720)
.++.|.+.+.++++-|+..+..+|-.+
T Consensus 252 ------------------------~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 252 ------------------------CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred ------------------------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 455677788888888898888887665
No 137
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.017 Score=64.44 Aligned_cols=260 Identities=20% Similarity=0.209 Sum_probs=154.7
Q ss_pred CChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 104 g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
++++.|+..+++.+. .||..|++.++.++ ..|.. ....++..+++++...+++ ..-
T Consensus 341 ~vie~Lls~l~d~dt------------~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~-------~aW 397 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT------------VVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDD-------SAW 397 (1133)
T ss_pred HHHHHHHHhccCCcc------------hhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCch-------hHH
Confidence 466777777777777 89999999999999 55521 2223456666655554433 556
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc--------CCCHHHHHHHHHHHHHhccCChhc-HHHHHhCCCHHH
Q 004992 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--------FTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPT 253 (720)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--------~~~~~v~~~a~~~L~~L~~~~~~~-~~~i~~~g~l~~ 253 (720)
..++-+|+.++...--....+ ..++|.++.-|. +....||.+||.+++.+++..... -+.+.+.=.-..
T Consensus 398 HgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~L 475 (1133)
T KOG1943|consen 398 HGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASAL 475 (1133)
T ss_pred HHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHH
Confidence 688888888885322111111 245566665553 234689999999999998744322 122322212233
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcC
Q 004992 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (720)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 333 (720)
++..+-|.+...|+.|..++........+. ..+++. +...+.-.-..+.++-..+..-....+.....++
T Consensus 476 L~~AlFDrevncRRAAsAAlqE~VGR~~n~------p~Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f--- 545 (1133)
T KOG1943|consen 476 LIVALFDREVNCRRAASAALQENVGRQGNF------PHGISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF--- 545 (1133)
T ss_pred HHHHhcCchhhHhHHHHHHHHHHhccCCCC------CCchhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH---
Confidence 445667888899999988887775432221 112221 1222221223344444444433333333333332
Q ss_pred ChHHHHHH-hcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 334 AVRPLIEM-LQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 334 ~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
..++.. +.+-+..+|+.++++|.+|+. .. ......+.++++++...+.+...+.....+...+..
T Consensus 546 --~~L~t~Kv~HWd~~irelaa~aL~~Ls~--~~----pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 546 --NHLLTKKVCHWDVKIRELAAYALHKLSL--TE----PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred --HHHHhcccccccHHHHHHHHHHHHHHHH--hh----HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 222222 556799999999999999887 12 334456778889998888888877766666555543
No 138
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0042 Score=62.66 Aligned_cols=307 Identities=17% Similarity=0.129 Sum_probs=155.5
Q ss_pred hHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccC-----ChhcHHHHHhCCCHHH
Q 004992 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-----NDENKNQIVECNALPT 253 (720)
Q Consensus 179 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-----~~~~~~~i~~~g~l~~ 253 (720)
..++..+..+|..++..-.-.+..++ .....+..-+.+..+.++..+..++..+..+ .|+..+.-...|.+..
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 46677777777777653332222222 1222333334567789999999988877641 1222222222222222
Q ss_pred HHH------h-hcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc----cCChHHHHHHHHHHHHHhccC
Q 004992 254 LIL------M-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS----SCCSESQREAALLLGQFAATD 322 (720)
Q Consensus 254 L~~------l-l~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~ 322 (720)
+.- . -.+..+..+..++..+.++....... ...|--.....++. +.+.-++.+|.+++.-+.-+.
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp 422 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN----LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHP 422 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC----CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEecc
Confidence 211 1 11223455666777777775321110 01111111222222 222335566666666554332
Q ss_pred cchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh--hhcCcchhhh--hhhcCCHHHHHHHh---cCCChhHHH
Q 004992 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ--VITDMHNQAG--IAHNGGLVPLLKLL---DSKNGSLQH 395 (720)
Q Consensus 323 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~--l~~~~~i~~l~~ll---~~~~~~v~~ 395 (720)
.......+.......+...+.+..-..|+.+.++++|++. +.+.+..+.. -...-.+..++... .-.+..|+.
T Consensus 423 ~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~ 502 (728)
T KOG4535|consen 423 CLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKS 502 (728)
T ss_pred chhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 2223333334456666777777778899999999999986 1111211111 11111122233322 223567888
Q ss_pred HHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHH-HHhcchhHHHHHHHH
Q 004992 396 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL-MRVAEKGVQRRVALA 474 (720)
Q Consensus 396 ~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~ 474 (720)
++..+|.|+...-+. ...|... + +..+-+..+... .-.....||.+++.+
T Consensus 503 navraLgnllQvlq~----------------------i~~~~~~------e-~~~~~~~~l~~~v~~~~~~kV~WNaCya 553 (728)
T KOG4535|consen 503 NAVRALGNLLQFLQP----------------------IEKPTFA------E-IIEESIQALISTVLTEAAMKVRWNACYA 553 (728)
T ss_pred HHHHHHhhHHHHHHH----------------------hhhccHH------H-HHHHHHHhcccceecccccccchHHHHH
Confidence 888888887642111 0111000 0 011112222222 123366799999999
Q ss_pred HHhhcCCccc--chhhhccCcHHHHHHhhcC-CCchhhhhHHHHHHHHH
Q 004992 475 LAHLCSPDDQ--RTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLA 520 (720)
Q Consensus 475 L~~l~~~~~~--~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~L~ 520 (720)
++||..++.. +..-......+.|..|+.+ .+-.||..|+.+|..-.
T Consensus 554 ~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 554 MGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred HHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 9999887753 2222233346778887765 77789999999887544
No 139
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.061 Score=59.28 Aligned_cols=161 Identities=8% Similarity=0.071 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (720)
.-..+.=.+++.+..+.+. ....+.+++.....+. |+++..---|.+++..+|+. .+. .+.
T Consensus 35 ~kidAmK~iIa~M~~G~dm------ssLf~dViK~~~trd~--------ElKrL~ylYl~~yak~~P~~--~lL---avN 95 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDM------SSLFPDVIKNVATRDV--------ELKRLLYLYLERYAKLKPEL--ALL---AVN 95 (757)
T ss_pred HHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHhccCHHH--HHH---HHH
Confidence 3444555677777744443 2245667777764443 89888888888888866632 222 568
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHc
Q 004992 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (720)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~ 290 (720)
.+..-++++|+.+|..|++++..+-. ..+... +++.+.+++.++++.||+.|+-++.++-..++ ....+.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~------~el~~~-~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRV------KELLGN-IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHEL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcCh------HHHHHH-HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcc
Confidence 88889999999999999999987763 223332 68899999999999999999999999975544 345567
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhc
Q 004992 291 GALQPVIGLLSSCCSESQREAALLLGQFAA 320 (720)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 320 (720)
|.+..+..++.+.+|.+..+|..++..+..
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 889999999999999999999999998853
No 140
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.58 E-value=0.00017 Score=58.27 Aligned_cols=87 Identities=25% Similarity=0.380 Sum_probs=66.6
Q ss_pred EEEEECCeEEehhHHHHh-hcchhHhhcccCC---cCCCCCCceecCCCCHHHHHHHHHHHhc-CCcccC-hhhHHHHHH
Q 004992 555 VTFLVEGRRFYAHRICLL-ASSDAFRAMFDGG---YREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVT-LDIAQDLLR 628 (720)
Q Consensus 555 v~~~~~~~~~~~h~~iL~-~~s~~f~~~~~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~~-~~~~~~ll~ 628 (720)
|.+.++|..|.+-+..|. ....+|..++.+. +....++.+-+ |=++..|+.+|+|+.+ +.++.+ ......++.
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 578899999999999998 4456999999864 33455566766 6799999999999999 677654 566889999
Q ss_pred HHhhhChHHH-HHHH
Q 004992 629 AADQYLLEGL-KRLC 642 (720)
Q Consensus 629 ~A~~~~~~~l-~~~c 642 (720)
-|++|+++.+ .+.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 6665
No 141
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.52 E-value=0.00034 Score=55.87 Aligned_cols=86 Identities=31% Similarity=0.434 Sum_probs=69.2
Q ss_pred hHHHHHhh-ccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhh
Q 004992 293 LQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQA 371 (720)
Q Consensus 293 l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 371 (720)
++.|++.+ +++++.+|..++.+|+.+.. ...++.|+.+++++++.+|..|+.+|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 57788888 78889999999999995521 1358999999999999999999999997754
Q ss_pred hhhhcCCHHHHHHHhcCC-ChhHHHHHHHHHH
Q 004992 372 GIAHNGGLVPLLKLLDSK-NGSLQHNAAFALY 402 (720)
Q Consensus 372 ~l~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~ 402 (720)
...++.|.+++.++ +..++..|..+|+
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34788999988664 5667888888874
No 142
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.49 E-value=0.00017 Score=66.41 Aligned_cols=91 Identities=16% Similarity=0.226 Sum_probs=68.2
Q ss_pred hhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCC--ceecCCCCHHHHHHHHHHHhcCCcccCh---
Q 004992 546 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEVFELMMRFIYTGSVDVTL--- 620 (720)
Q Consensus 546 ~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~--~i~l~~~~~~~~~~~l~~~Yt~~~~~~~--- 620 (720)
.+....+.|+-+.....-|++||++|++|||+|+.+.++........ .+..-+++.+.|+++|+|+|||..-+..
T Consensus 124 ~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~f 203 (401)
T KOG2838|consen 124 GYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGF 203 (401)
T ss_pred hhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCC
Confidence 44556778999999999999999999999999999987654322222 3555678999999999999999775432
Q ss_pred hhHHHHHHHHhhhChH
Q 004992 621 DIAQDLLRAADQYLLE 636 (720)
Q Consensus 621 ~~~~~ll~~A~~~~~~ 636 (720)
.++.-+-.+..-|+.+
T Consensus 204 qn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 204 QNSDILEQLCEDFGCF 219 (401)
T ss_pred chHHHHHHHHHhhCCc
Confidence 3444555666666654
No 143
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=0.00012 Score=73.99 Aligned_cols=133 Identities=21% Similarity=0.186 Sum_probs=112.8
Q ss_pred CeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhHH---HHHHHHhhhChHH
Q 004992 561 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ---DLLRAADQYLLEG 637 (720)
Q Consensus 561 ~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~---~ll~~A~~~~~~~ 637 (720)
++.+..|+.+++++++.|+.++..+..+.....+.+.+.+++.++.+..|.|+..-........ .++..+++++.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 5669999999999999999999987766666677888999999999999999976655555454 7888999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHH--HHHHhhCChhhHh
Q 004992 638 LKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIME--HFDKLSTRPGHSN 693 (720)
Q Consensus 638 l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~--~~~~v~~~~~f~~ 693 (720)
|+..|...+...+...++...+..+..++...+...+..++.. +++.+.+..++..
T Consensus 189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~ 246 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVK 246 (297)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHH
Confidence 9999999999999999988999999999999999999999987 7777776555433
No 144
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.46 E-value=0.00059 Score=54.58 Aligned_cols=67 Identities=28% Similarity=0.323 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc--CCCHHHHHHHHHHHHHhccCChhcHHHHHh
Q 004992 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (720)
Q Consensus 181 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~ 247 (720)
++...+.+++|+|..++.++..+.+.|+++.++.... +.+|-+++.|..++++|+.+++++++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567889999999999999999999999999998764 457999999999999999999999988875
No 145
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.46 E-value=0.0068 Score=57.96 Aligned_cols=227 Identities=17% Similarity=0.148 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHHHHccChhhHHHHHhC-CChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
|+-.+..|+.++.++...++.|...... .+-..++.++++.-. +..++...+-+++-++.++.+.+.+-
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg----------~~qlQY~SL~~iw~lTf~~~~aqdi~ 231 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG----------VKQLQYNSLIIIWILTFSKECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh----------hhhhHHHHHHHHHHHhcCHHHHHHHH
Confidence 4446889999999999988888866643 344566777765433 12899999999999998888875444
Q ss_pred H-cCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCc--hhhHHHHhcCCcHHHHHhhcC--CCHHHHHHHHH
Q 004992 155 D-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS--SIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAG 229 (720)
Q Consensus 155 ~-~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~ 229 (720)
. ...+..++.+.+..... .|.+.++.++.|++...+ .........++.+...-+++. .|++++...-.
T Consensus 232 K~~dli~dli~iVk~~~ke-------KV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~ 304 (432)
T COG5231 232 KMDDLINDLIAIVKERAKE-------KVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIER 304 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHH
Confidence 3 24566777777665443 888999999999997442 222223322343444334432 34444432221
Q ss_pred HHHHh-------cc--------------CCh---------hcHHHHHh--CCCHHHHHHhhcCCCHH-HHHHHHHHHHHh
Q 004992 230 ALRTL-------AF--------------KND---------ENKNQIVE--CNALPTLILMLRSEDSA-IHYEAVGVIGNL 276 (720)
Q Consensus 230 ~L~~L-------~~--------------~~~---------~~~~~i~~--~g~l~~L~~ll~~~~~~-v~~~a~~~L~nL 276 (720)
+=..| +. .+| .+.+.+.+ ..++..|.++++..++. ....|+.-+..+
T Consensus 305 i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~ 384 (432)
T COG5231 305 IRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQL 384 (432)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHH
Confidence 11111 10 011 23344443 23578888888887665 445567778888
Q ss_pred hcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHh
Q 004992 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (720)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (720)
....|+....+...|+=..+++++++++++++-+|+.++..+.
T Consensus 385 Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 385 VRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 8888998888889999999999999999999999999888764
No 146
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.45 E-value=0.00028 Score=58.32 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhhhcHHHHHH
Q 004992 655 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHN 704 (720)
Q Consensus 655 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~l~~ 704 (720)
|++++.+|..|+...|.+.|.+||..||.++.++++|.+|+.+.+..+++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~ 50 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILS 50 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHh
Confidence 78999999999999999999999999999999999999997665555443
No 147
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.025 Score=60.92 Aligned_cols=275 Identities=16% Similarity=0.151 Sum_probs=145.8
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHH
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~ 287 (720)
..+.+-..+++....+...+++++.++....+ ..+.. .+..|-.++.++...+|..|.++|..++...|.....
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~- 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV- 319 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc-
Confidence 44556667788889999999999999885222 22222 6888888899999999999999999998766642110
Q ss_pred HHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCc
Q 004992 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDM 367 (720)
Q Consensus 288 ~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (720)
.=.-|-.++.+.+-.+...|..+|..- +.+.....+. ..+..++.+-+.+.+..++.++..++.. .+
T Consensus 320 ----cN~elE~lItd~NrsIat~AITtLLKT--G~e~sv~rLm-----~qI~~fv~disDeFKivvvdai~sLc~~--fp 386 (865)
T KOG1078|consen 320 ----CNLDLESLITDSNRSIATLAITTLLKT--GTESSVDRLM-----KQISSFVSDISDEFKIVVVDAIRSLCLK--FP 386 (865)
T ss_pred ----cchhHHhhhcccccchhHHHHHHHHHh--cchhHHHHHH-----HHHHHHHHhccccceEEeHHHHHHHHhh--cc
Confidence 011223333443333333333333322 2333333322 2222223222223333333334434431 11
Q ss_pred chhhhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhccc-CCCchhHHHhhcccccccchhhhhhhhHHH-----HHHH
Q 004992 368 HNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDC-----VAKT 440 (720)
Q Consensus 368 ~~~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~-----~~~~ 440 (720)
. ...+.+..|.++| +++..+.+.....+|..+.. +++.+...... | -....+| ...+
T Consensus 387 ~-----k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~-----L------CefIEDce~~~i~~rI 450 (865)
T KOG1078|consen 387 R-----KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEH-----L------CEFIEDCEFTQIAVRI 450 (865)
T ss_pred H-----HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHH-----H------HHHHHhccchHHHHHH
Confidence 1 1112233444444 23344455555555555443 23222211110 0 0011111 1111
Q ss_pred HHHHHH-----hhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHH
Q 004992 441 LKRLEE-----KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVA 515 (720)
Q Consensus 441 ~~~l~~-----~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~a 515 (720)
+..+.. ...+..+..+...+.-.+..+|..|+.+|.++..... .....+.-.|.+.+.+.|.++|.+|..+
T Consensus 451 LhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~----~l~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 451 LHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV----VLLPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred HHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC----CccccHHHHHHHHhcCchHHHHHHHHHH
Confidence 111111 1234455556666666788899999999999973322 1123445677789999999999999999
Q ss_pred HHHHHh
Q 004992 516 LFKLAN 521 (720)
Q Consensus 516 L~~L~~ 521 (720)
|.++..
T Consensus 527 l~~l~~ 532 (865)
T KOG1078|consen 527 LKNLEE 532 (865)
T ss_pred HHHhhh
Confidence 999884
No 148
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.018 Score=53.98 Aligned_cols=225 Identities=20% Similarity=0.225 Sum_probs=143.1
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCcchHHH
Q 004992 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKE 286 (720)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~nL~~~~~~~~~~ 286 (720)
+..+.+...+++.......+.+|+.+.. ...++.++..+.+. .+-||..|..+|+++. . +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~----- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-P----- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-h-----
Confidence 4555555555555566667777777663 45799999998875 5678999999999995 2 2
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchh-----hHH-------HhcCChHHHHHHhcC-CCH-HHHHH
Q 004992 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-----VHI-------VQRGAVRPLIEMLQS-PDV-QLREM 352 (720)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~-------~~~~~~~~L~~ll~~-~~~-~v~~~ 352 (720)
..++.+-...+++...++..+..++..+-..+.... ... ...+-+..+-..+.+ ..+ --|..
T Consensus 100 ----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~ 175 (289)
T KOG0567|consen 100 ----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR 175 (289)
T ss_pred ----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence 245666677777777888888788887753211111 000 011112233333322 111 12334
Q ss_pred HHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhh
Q 004992 353 SAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 432 (720)
Q Consensus 353 a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~ 432 (720)
|...|.|+.. ...+..+++-+...+..+|..++.+++.|-...
T Consensus 176 amF~LRn~g~-------------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~------------------------ 218 (289)
T KOG0567|consen 176 AMFYLRNIGT-------------EEAINALIDGLADDSALFRHEVAFVFGQLQSPA------------------------ 218 (289)
T ss_pred hhhHhhccCc-------------HHHHHHHHHhcccchHHHHHHHHHHHhhccchh------------------------
Confidence 4444444332 123555666666667788888888888874211
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHh--cchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhh
Q 004992 433 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL 510 (720)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 510 (720)
.++.|.+.|.+ .+|-||..|+.+|+.++.. ..++.|.+.+.++.+-|++
T Consensus 219 -------------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~e 269 (289)
T KOG0567|consen 219 -------------------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRE 269 (289)
T ss_pred -------------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHH
Confidence 34556665654 4889999999999988654 4588999999999999999
Q ss_pred hHHHHHHHHHh
Q 004992 511 DGAVALFKLAN 521 (720)
Q Consensus 511 ~a~~aL~~L~~ 521 (720)
.+..+|-.+-.
T Consensus 270 sc~valdm~ey 280 (289)
T KOG0567|consen 270 SCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHH
Confidence 98888876553
No 149
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.097 Score=58.20 Aligned_cols=263 Identities=14% Similarity=0.122 Sum_probs=152.0
Q ss_pred HhHHHHHHHHHHHHHHcc----ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhH
Q 004992 75 ADRAAAKRATHVLAELAK----NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ 150 (720)
Q Consensus 75 ~d~~~~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~ 150 (720)
.++.-+.-|++.++++++ ..-++..+ +.=.++.+...++++.. -+|..|+|+++.+++- +..
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g------------~Lrarac~vl~~~~~~-df~ 495 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYG------------YLRARACWVLSQFSSI-DFK 495 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchh------------HHHHHHHHHHHHHHhc-cCC
Confidence 455567778888888775 12222222 22245556667777766 8999999999999921 122
Q ss_pred HHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHh--cCCcHHHHHhhcCCCHHHHHHHH
Q 004992 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAA 228 (720)
Q Consensus 151 ~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~ 228 (720)
+...-..++....+.|.+++.- .|+..|+-+|..+.+..+.....+.. .+.++.|+.+.+.-+.+....++
T Consensus 496 d~~~l~~ale~t~~~l~~d~~l-------PV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vm 568 (1010)
T KOG1991|consen 496 DPNNLSEALELTHNCLLNDNEL-------PVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVM 568 (1010)
T ss_pred ChHHHHHHHHHHHHHhccCCcC-------chhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHH
Confidence 2223344567777777754333 88899999999998866655443321 12334444555544444444443
Q ss_pred HHH-HHhccCChhcHHHHHhCCCHHHHHHhhcC---C---CHHHHHHHHHHHHHhh------cCCcchHHHHHHcCChHH
Q 004992 229 GAL-RTLAFKNDENKNQIVECNALPTLILMLRS---E---DSAIHYEAVGVIGNLV------HSSPNIKKEVLAAGALQP 295 (720)
Q Consensus 229 ~~L-~~L~~~~~~~~~~i~~~g~l~~L~~ll~~---~---~~~v~~~a~~~L~nL~------~~~~~~~~~~~~~~~l~~ 295 (720)
..+ +..+..-......+.++ +...+.+++.. . +.+=...|..+|..+. ...+...+. ++..+++.
T Consensus 569 e~iV~~fseElsPfA~eL~q~-La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~v 646 (1010)
T KOG1991|consen 569 EKIVCKFSEELSPFAVELCQN-LAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIVLPV 646 (1010)
T ss_pred HHHHHHHHHhhchhHHHHHHH-HHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHH
Confidence 332 23332111222333332 56666777663 1 1222333444444432 122222221 34456777
Q ss_pred HHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
+-.++++.-.+.-++++..+.+++...++....+ =|+++.+.+.+++...+--....-+|.|...
T Consensus 647 i~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 647 IGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 7778887778888888888888875433332222 2567888888888777778888888888887
No 150
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.35 E-value=0.00041 Score=49.45 Aligned_cols=55 Identities=36% Similarity=0.422 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (720)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL 276 (720)
+.+|..|+++|++++...+....... ..+++.|+.+|+|+++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57899999999999875555555544 34899999999999999999999999875
No 151
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.35 E-value=0.00088 Score=53.59 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhc
Q 004992 132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (720)
Q Consensus 132 v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (720)
++...+++++|++ .++..++.+.+.|+++.+++...-++..+ -++++|++++.+|+.++++++..+...
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP------~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNP------FIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccH------HHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567889999999 99999999999999999999986654433 899999999999999999999876643
No 152
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.25 E-value=0.059 Score=54.33 Aligned_cols=228 Identities=16% Similarity=0.109 Sum_probs=154.3
Q ss_pred HHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHH----HHHHcCChHHHHHhhcc-CChHHHHHHHHHHHHH
Q 004992 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK----EVLAAGALQPVIGLLSS-CCSESQREAALLLGQF 318 (720)
Q Consensus 244 ~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~----~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l 318 (720)
.+...+.+..|+..|..-+-+.|+.+..+..++.......+. .-+....-..+..++.. +++++...+...|..+
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 344568899999999988999999999999999865443321 11222223333333332 3577777888888887
Q ss_pred hccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcC---CHHHHHHHhcCCChhHHH
Q 004992 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNG---GLVPLLKLLDSKNGSLQH 395 (720)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~---~i~~l~~ll~~~~~~v~~ 395 (720)
+. .+.....+.....+..+.+.+..++.++..-|..++..+.. ++......+...+ +......++.++|+-.++
T Consensus 151 ~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt--~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 151 IK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLT--RHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp TT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHH--SSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred Hh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 75 45666677788889999999999999999999999998777 2444444444443 355677888999999999
Q ss_pred HHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHH
Q 004992 396 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 475 (720)
Q Consensus 396 ~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 475 (720)
.++..|+.|-.++.+...+.. .+-+..-+..++.++++++..+|..|..++
T Consensus 228 qslkLL~ellldr~n~~vm~~-----------------------------yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvF 278 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTR-----------------------------YISSPENLKLMMNLLRDKSKNIQFEAFHVF 278 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHH-----------------------------HTT-HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHchhHHHHHHH-----------------------------HHCCHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 999999999888877654443 122344567788899999999999999999
Q ss_pred HhhcCCcccchhhhc--cCcHHHHHHhhcC
Q 004992 476 AHLCSPDDQRTIFID--GGGLELLLGLLGS 503 (720)
Q Consensus 476 ~~l~~~~~~~~~~~~--~~~~~~L~~ll~~ 503 (720)
--+..++.....+.+ ..--..|+..+.+
T Consensus 279 KvFVANp~K~~~I~~iL~~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 279 KVFVANPNKPPPIVDILIKNREKLLRFLKD 308 (335)
T ss_dssp HHHHH-SS-BHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 988776653332221 1223455555543
No 153
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.063 Score=59.14 Aligned_cols=168 Identities=15% Similarity=0.172 Sum_probs=122.2
Q ss_pred hcCCCHHHHHHHH-HHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChH
Q 004992 216 LEFTDTKVQRAAA-GALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (720)
Q Consensus 216 l~~~~~~v~~~a~-~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~ 294 (720)
+.+.+...+..|+ .+++.++.|++ + .-..+-+++...+.+.++++.+---+.+.+...|+.... .+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d------m-ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED------M-SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC------h-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHH
Confidence 5555555555444 56777776554 1 125666777777888899988888888888777743222 456
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhh
Q 004992 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIA 374 (720)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~ 374 (720)
.+..=++++++.+|..|+++++.+- .++.. ..+++.+.+++.++++.||+.|+.++.++=+ -......
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~--~~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-----ld~~l~~ 163 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLR--VKELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-----LDKDLYH 163 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcC--hHHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-----cCHhhhh
Confidence 6777788889999999998888772 12221 2357888899999999999999999998886 2234455
Q ss_pred hcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC
Q 004992 375 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 407 (720)
Q Consensus 375 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (720)
+.|.+..+..++.+.+|.+..+|+.+|..+-..
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 667788888888899999999999999988654
No 154
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.24 E-value=0.0011 Score=50.57 Aligned_cols=79 Identities=25% Similarity=0.454 Sum_probs=62.8
Q ss_pred EEEEE-CCeEEehhHHHHhhcchhHhhcccCC--cCCCCCCceecCCCCHHHHHHHHHHH-----hcCC------cccCh
Q 004992 555 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGG--YREKDARDIEIPNIRWEVFELMMRFI-----YTGS------VDVTL 620 (720)
Q Consensus 555 v~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~--~~e~~~~~i~l~~~~~~~~~~~l~~~-----Yt~~------~~~~~ 620 (720)
|.++. +|.+|-..|.+ +.-|+-.|+|++++ +.|+...++.+++++...++.+.+|+ |++. .+|++
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 44444 45777777765 55789999999976 45677789999999999999999998 4443 34889
Q ss_pred hhHHHHHHHHhhhC
Q 004992 621 DIAQDLLRAADQYL 634 (720)
Q Consensus 621 ~~~~~ll~~A~~~~ 634 (720)
+.+++|+.+|+++.
T Consensus 98 emaleLL~aAn~Le 111 (112)
T KOG3473|consen 98 EMALELLMAANYLE 111 (112)
T ss_pred HHHHHHHHHhhhhc
Confidence 99999999999875
No 155
>PRK14707 hypothetical protein; Provisional
Probab=97.22 E-value=0.27 Score=59.14 Aligned_cols=309 Identities=17% Similarity=0.162 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHHH-HHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 76 DRAAAKRATHVLA-ELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 76 d~~~~~~a~~~L~-~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
|..+...|+..|. .+..+++.+..+-..++-..|-.+-+-++. ...+..+...-..++.+++.+..+-
T Consensus 303 d~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~-----------~~C~~Aa~~LA~rl~~d~~l~~~l~ 371 (2710)
T PRK14707 303 DLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDN-----------PVCAAAVSALAERLVADPELRKDLE 371 (2710)
T ss_pred CchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCc-----------hhHHHHHHHHHHHhccCHhhhcccc
Confidence 3344444444444 455566666554444333333333344444 2444445544555668888887766
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (720)
..| +..+++-+....+. .+.+.++..|..-...+++.++.+-..|+-..|-.+.+-++..+-..+...|..-
T Consensus 372 ~q~-~a~~lNalsKWp~~-------~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~ 443 (2710)
T PRK14707 372 PQG-VSSVLNALSKWPDT-------PVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGR 443 (2710)
T ss_pred hhH-HHHHHhhhhcCCCc-------hHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHH
Confidence 444 55556666555443 6777777777766666777777766666666666777888877777777777755
Q ss_pred ccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCC-hHHHHHHHH
Q 004992 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAAL 313 (720)
Q Consensus 235 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~a~~ 313 (720)
...+.+.++.+-..++...|-.+-+=++..+...+...|..=.......++.+--.++...|-.+-+-++ ......+.+
T Consensus 444 la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~ 523 (2710)
T PRK14707 444 LAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASA 523 (2710)
T ss_pred HhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 5556666666654444444444444456666666666665544555666555544444444444444444 334444445
Q ss_pred HHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc-CCC-h
Q 004992 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD-SKN-G 391 (720)
Q Consensus 314 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~-~~~-~ 391 (720)
+-..+.. .......+...++...+-.+-+.++....+.++..|..+.. ..+..+.. .+...+..+++.++ -++ .
T Consensus 524 lA~rl~~-~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~--~~~~~~~~-L~aq~Vs~llNaLSKWP~~~ 599 (2710)
T PRK14707 524 LAERVVD-ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLA--DEPQLPKD-LHRQGVVIVLNALSKWPDTA 599 (2710)
T ss_pred HHHHhcc-chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhh--cchhhHHh-hhhhHHHHHHHhhccCCCcH
Confidence 5555542 22222222222333333333345666666666666666544 12233333 33445666666663 333 3
Q ss_pred hHHHHHHHHHHhcccC
Q 004992 392 SLQHNAAFALYGLADN 407 (720)
Q Consensus 392 ~v~~~a~~~L~~l~~~ 407 (720)
..+..+.+.-..+...
T Consensus 600 aC~~Aa~~LA~~l~~~ 615 (2710)
T PRK14707 600 VCAEAVNALAERLVDE 615 (2710)
T ss_pred HHHHHHHHHHHHhccC
Confidence 3444444444444443
No 156
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.084 Score=54.09 Aligned_cols=261 Identities=16% Similarity=0.033 Sum_probs=136.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcC
Q 004992 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (720)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 333 (720)
+..-..+++..+|..|++.|+|.+..-|.........-+...+..+..+.+.++..++..+|..+...-........=-+
T Consensus 263 la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ 342 (533)
T KOG2032|consen 263 LANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLN 342 (533)
T ss_pred HHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchh
Confidence 33344567778999999999999988665444433333334445555666788999998888877632111111111112
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhh--cCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCch
Q 004992 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 411 (720)
Q Consensus 334 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~--~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 411 (720)
+.-.+..+..+.++++|.++...++.|+... +...+..+.+ .+...+++-.++++++.+-.++-..+..+..+ -.+
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~-g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~-l~r 420 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLA-GGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPN-LVR 420 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHc-CCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCch-hHH
Confidence 3455667778899999999999999988733 2222233332 12233344445667776655444444333221 111
Q ss_pred hHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhh----HHHHHHHHHhcchhHHHHHHHHHHhhcCCcc--cc
Q 004992 412 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV----LNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QR 485 (720)
Q Consensus 412 ~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~ 485 (720)
+ ...+.++...+.... ...+.-...+..+..+ ..++ ......++++.-+.+|..+..--.++..+-. .+
T Consensus 421 k--e~~~~~q~~ld~~~~--~~q~Fyn~~c~~L~~i-~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c 495 (533)
T KOG2032|consen 421 K--ELYHLFQESLDTDMA--RFQAFYNQWCIQLNHI-HPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAAC 495 (533)
T ss_pred H--HHHHHHhhhhHHhHH--HHHHHHHHHHHHHhhh-CHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHH
Confidence 1 112233322221110 0011111111111111 1111 1122223344445666666655555433322 11
Q ss_pred hhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHh
Q 004992 486 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 486 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~ 521 (720)
...-.......|..+..++-|+++..|.+|+..++.
T Consensus 496 ~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 496 SSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 111111224567778888999999999999987764
No 157
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.11 E-value=0.028 Score=56.61 Aligned_cols=260 Identities=15% Similarity=0.162 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHhccCChhcHHHHHhC--CCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHH
Q 004992 221 TKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (720)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~--g~l~~L~~ll~-~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~ 297 (720)
.++.+.+...|..+....+..++...+. .-+..+-..+. +++.+-.... +..| ..++...+.+..|+
T Consensus 13 ~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~---v~qL-------a~Ei~~~dll~~Li 82 (335)
T PF08569_consen 13 AELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQ---VAQL-------AQEIYRSDLLYLLI 82 (335)
T ss_dssp HHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHH---HHHH-------HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHH---HHHH-------HHHHHHhCHHHHHH
Confidence 4666677777777731122333322221 12333333333 3333332222 2333 25566778999999
Q ss_pred HhhccCChHHHHHHHHHHHHHhccCcchhh----HHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCcchhhh
Q 004992 298 GLLSSCCSESQREAALLLGQFAATDSDCKV----HIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITDMHNQAG 372 (720)
Q Consensus 298 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~----~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 372 (720)
..|..-+.+.|+.++.+..++.......+. ..+....-..+..++.. .++++.-.+...|..++. .+.....
T Consensus 83 ~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k---~e~l~~~ 159 (335)
T PF08569_consen 83 RNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIK---HESLAKI 159 (335)
T ss_dssp HTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTT---SHHHHHH
T ss_pred HHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHh---hHHHHHH
Confidence 999999999999999999999865433322 22223223333333333 467778888888888888 7777777
Q ss_pred hhhcCCHHHHHHHhcCCChhHHHHHHHHHHhc-ccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhh
Q 004992 373 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 451 (720)
Q Consensus 373 l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (720)
+.....+..+.+....++-++...|..++.-+ +.++.-...++... -..
T Consensus 160 iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n------------------------------~d~ 209 (335)
T PF08569_consen 160 ILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN------------------------------YDR 209 (335)
T ss_dssp HHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT------------------------------HHH
T ss_pred HhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH------------------------------HHH
Confidence 77788888899999999999999999999887 44444333333322 223
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhh----hccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 452 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF----IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 452 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~----~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+...+..++.+++.-+|.++++.|+.+..+..+..+| -+..-+..+..+++++...+|..|-..+--..-++
T Consensus 210 ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 210 FFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 5667888999999999999999999998887765543 23345778889999999999999998888777654
No 158
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.10 E-value=0.00045 Score=49.24 Aligned_cols=55 Identities=25% Similarity=0.113 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHH
Q 004992 465 KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 519 (720)
Q Consensus 465 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L 519 (720)
|.+|..|+++|++++..............++.|..++.+++++||..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999987766444446678899999999999999999999999875
No 159
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.09 E-value=0.062 Score=49.78 Aligned_cols=182 Identities=13% Similarity=0.143 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHcC
Q 004992 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (720)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~ 157 (720)
...|+..|..++++|+.+..+.+..+--.|-.+|...+.. ++++ -+|..++.+++.|. ++.+....+...+
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~------r~fE-yLRLtsLGVIgaLvk~dd~eVi~fLl~Te 168 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKS------RPFE-YLRLTSLGVIGALVKNDDQEVIRFLLTTE 168 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccC------CchH-HHhHHHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 5677778888888999999999987777777888765542 2333 68999999999999 6777888888999
Q ss_pred ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhH------HHHh-cCCc-HHHHHhhcCCCHHHHHHHHH
Q 004992 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVRM-EGGI-PPLVELLEFTDTKVQRAAAG 229 (720)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~------~~~~-~~~i-~~L~~ll~~~~~~v~~~a~~ 229 (720)
++|..++.+...+. .-+..|..++..+..++....- .+.. .-.+ ..+.++.+.++..+...+.+
T Consensus 169 IVPlCLrime~GSe--------lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviR 240 (293)
T KOG3036|consen 169 IVPLCLRIMESGSE--------LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIR 240 (293)
T ss_pred hHHHHHHHHhcccH--------HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999998877 6677788888777654332211 1111 1122 33445667889999999999
Q ss_pred HHHHhccCChhcHHHHHhC---CCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 004992 230 ALRTLAFKNDENKNQIVEC---NALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 230 ~L~~L~~~~~~~~~~i~~~---g~l~~L~~ll~~~~~~v~~~a~~~L~nL~ 277 (720)
+..+|+. ++..+..+... +.-..-...+-.+|+..+.+....+.|++
T Consensus 241 cYlrLsd-nprar~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 241 CYLRLSD-NPRARAALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHhcC-CHHHHHHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 9999995 77666666542 11111112222345556666556666664
No 160
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.04 E-value=1.1 Score=52.60 Aligned_cols=145 Identities=12% Similarity=0.154 Sum_probs=87.0
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc-ChhhH-HHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHH
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~-~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~ 135 (720)
.....+..+...+.. +-..+|-.|+++|..+.. +|... ..-++. .+-.-+.+.+. .||++
T Consensus 813 sfD~yLk~Il~~l~e--~~ialRtkAlKclS~ive~Dp~vL~~~dvq~----~Vh~R~~Dssa------------sVREA 874 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGE--NAIALRTKALKCLSMIVEADPSVLSRPDVQE----AVHGRLNDSSA------------SVREA 874 (1692)
T ss_pred hhHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhcChHhhcCHHHHH----HHHHhhccchh------------HHHHH
Confidence 333444444444442 356689999999999988 44321 122222 22233344445 89999
Q ss_pred HHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHH
Q 004992 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (720)
Q Consensus 136 a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (720)
|+..++... ..++.....- ..+.+-+.+..- .||..+++++..+|...+...... .++..++.
T Consensus 875 aldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgv--------sVRKRvIKIlrdic~e~pdf~~i~---~~cakmlr 938 (1692)
T KOG1020|consen 875 ALDLVGRFVLSIPELIFQYY-----DQIIERILDTGV--------SVRKRVIKILRDICEETPDFSKIV---DMCAKMLR 938 (1692)
T ss_pred HHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCch--------hHHHHHHHHHHHHHHhCCChhhHH---HHHHHHHH
Confidence 999999877 6666544322 334444444433 899999999999998777654321 12222233
Q ss_pred hhcCCCHHHHHHHHHHHHHhcc
Q 004992 215 LLEFTDTKVQRAAAGALRTLAF 236 (720)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~ 236 (720)
=..++...++..++.++.++-.
T Consensus 939 Rv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 939 RVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HhccchhHHHHHHHHHHHHHhc
Confidence 3334445577777777777765
No 161
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.18 Score=54.70 Aligned_cols=270 Identities=14% Similarity=0.107 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCc
Q 004992 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (720)
Q Consensus 131 ~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (720)
.+...|+.++.++. ..+.. + ...+..+-.+++.+.. .+|-.|.++|..++..++..-. -.-
T Consensus 260 mV~~EaArai~~l~~~~~r~---l--~pavs~Lq~flssp~~--------~lRfaAvRtLnkvAm~~P~~v~-----~cN 321 (865)
T KOG1078|consen 260 MVIYEAARAIVSLPNTNSRE---L--APAVSVLQLFLSSPKV--------ALRFAAVRTLNKVAMKHPQAVT-----VCN 321 (865)
T ss_pred HHHHHHHHHHhhccccCHhh---c--chHHHHHHHHhcCcHH--------HHHHHHHHHHHHHHHhCCcccc-----ccc
Confidence 66777777777777 22221 1 1145566666666555 7778888888888876553221 122
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHH
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~ 289 (720)
.-|-.++.+.+..+...|...|..-. .+.+...+... ++.++.=+.++..-+...++.+|++.. +. ..
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG--~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~f---p~-----k~ 389 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTG--TESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLKF---PR-----KH 389 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhc--chhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhhc---cH-----HH
Confidence 34555666666666666666665443 56666666554 666666666666666666666666653 32 12
Q ss_pred cCChHHHHHhhcc-CChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcc
Q 004992 290 AGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMH 368 (720)
Q Consensus 290 ~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (720)
.+.++.|..+|.+ +..+-++....++..+...+++.+.. ++..|+..+.+. +...-+...|.-+.. +
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~-----E 457 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGK-----E 457 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhc-----c
Confidence 3456667777654 34667777777777777655555442 345566666542 334556666666665 1
Q ss_pred hhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhh
Q 004992 369 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 448 (720)
Q Consensus 369 ~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (720)
.-........+..+.+...-.+..+|..|..+|.++....+..
T Consensus 458 gP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l------------------------------------- 500 (865)
T KOG1078|consen 458 GPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL------------------------------------- 500 (865)
T ss_pred CCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-------------------------------------
Confidence 1112223344555666666668889999999999987332210
Q ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHHhhc
Q 004992 449 HGRVLNHLLYLMRVAEKGVQRRVALALAHLC 479 (720)
Q Consensus 449 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 479 (720)
...+...|.+++.+.+.++|..|...|.++-
T Consensus 501 ~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 501 LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 1124445677888999999999999998886
No 162
>PRK14707 hypothetical protein; Provisional
Probab=97.00 E-value=0.41 Score=57.73 Aligned_cols=303 Identities=18% Similarity=0.137 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHH-HHhccChhhHHHHHHc
Q 004992 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL-GLLAVKPEHQQLIVDN 156 (720)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L-~~L~~~~~~~~~~~~~ 156 (720)
....++..|..... ++..+..+-..|+-..|-.+.+-++. .+-..++..| ..++.++..+..+-..
T Consensus 222 ~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~------------~~C~~a~~~lA~rl~~~~~l~~al~~q 289 (2710)
T PRK14707 222 DCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADT------------PVCAAAASALAERLVDDPGLRKALDPI 289 (2710)
T ss_pred hHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCc------------hHHHHHHHHHHHHHhhhHHHHHhcCHH
Confidence 45566666665444 45555554444444444444444444 3444444444 4455777777665544
Q ss_pred CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004992 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (720)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (720)
+ +...++-|....+. .+...|+..|..-.-+++..+..+-..++-..|-.+.+-++..+-..++.+|..=..
T Consensus 290 ~-vanalNalSKwpd~-------~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~ 361 (2710)
T PRK14707 290 N-VTQALNALSKWADL-------PVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLV 361 (2710)
T ss_pred H-HHHHHhhhhcCCCc-------hHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence 4 33444444444333 666666666655444355555443333343444455566776666666666664444
Q ss_pred CChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHH
Q 004992 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (720)
Q Consensus 237 ~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (720)
++++.++.+-..|+-..|-.+-+=++..+...+...|..=...+++.++.+-..|+-..|-.+-+-++..+-..++..|.
T Consensus 362 ~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 362 ADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred cCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 46676666654444444444444466667767777776665676777777655555555555555556666666666666
Q ss_pred HHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHH-HHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhH-
Q 004992 317 QFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALG-RLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSL- 393 (720)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~-~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v- 393 (720)
.-...+.+....+--.+ +-..+..+.. ++..+...++..|. .|+. ..+.++.+-..++...|-.+-+-++...
T Consensus 442 ~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~---~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c 517 (2710)
T PRK14707 442 GRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAH---ERRLRKALKPQEVVIALHSLSKWPDTPIC 517 (2710)
T ss_pred HHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcc---cHHHHhhcCHHHHHHHHHHhhcCCCcHHH
Confidence 54444555444333333 3344444444 55555555555444 5555 4444444433333333333334444333
Q ss_pred HHHHHHHHHhcc
Q 004992 394 QHNAAFALYGLA 405 (720)
Q Consensus 394 ~~~a~~~L~~l~ 405 (720)
...+.++-..+.
T Consensus 518 ~~A~~~lA~rl~ 529 (2710)
T PRK14707 518 AEAASALAERVV 529 (2710)
T ss_pred HHHHHHHHHHhc
Confidence 333344444444
No 163
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.98 E-value=0.002 Score=42.48 Aligned_cols=39 Identities=38% Similarity=0.609 Sum_probs=35.6
Q ss_pred hhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 004992 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 239 ~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~ 277 (720)
++++..+.+.|+++.|+.++.+++++++..++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788889999999999999999999999999999996
No 164
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.97 E-value=0.69 Score=49.05 Aligned_cols=339 Identities=17% Similarity=0.128 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhH-----H
Q 004992 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ-----Q 151 (720)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~-----~ 151 (720)
......+.+|+.++.++...+.+.. ..+..+-..++.... .+....++.+|.++. ...... .
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~-----------~~~~~~il~tl~~~~~~~~~~~~~~~~~ 84 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESS-----------SDYCHAILSTLQSLLEKKQEDKQFEDNS 84 (415)
T ss_pred hHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCC-----------hHHHHHHHHHHHHHHHhcccccccchHH
Confidence 4578889999999998776555543 455555555543322 156667778888776 221111 2
Q ss_pred HHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc----------C---
Q 004992 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----------F--- 218 (720)
Q Consensus 152 ~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----------~--- 218 (720)
...+..+++.+.++.......... .+..+...+..++..+...-+..+..-. +..+..+.- .
T Consensus 85 ~y~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~ 159 (415)
T PF12460_consen 85 WYFHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSST 159 (415)
T ss_pred HHHHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCccccc
Confidence 223334778887777554332221 1226666666666666654443332221 223333221 0
Q ss_pred ---CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChH
Q 004992 219 ---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (720)
Q Consensus 219 ---~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~ 294 (720)
.......-...++..+-.+.... .. ...+..++.+..+ .++..+..++.+++.+.-.-+. .. .-..++.
T Consensus 160 ~~~~~~~~~~l~~~il~~l~~~~~~~--~~--~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~--~~-~l~~~l~ 232 (415)
T PF12460_consen 160 ISEQQSRLVILFSAILCSLRKDVSLP--DL--EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD--DD-DLDEFLD 232 (415)
T ss_pred cccccccHHHHHHHHHHcCCcccCcc--CH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC--hh-hHHHHHH
Confidence 11223333344455444321111 11 1256667766544 4578888889988888733111 11 1112333
Q ss_pred HHHHhh-ccCChHH----HHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcC-cc
Q 004992 295 PVIGLL-SSCCSES----QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITD-MH 368 (720)
Q Consensus 295 ~L~~ll-~~~~~~~----~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~ 368 (720)
.+...+ ....... ..-.+|+...+...+..... ..+..|++++.+ +++...++.++.-+.. + +.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~---d~~~ 302 (415)
T PF12460_consen 233 SLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS--PELGQQAAKAFGILLS---DSDD 302 (415)
T ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhc---CcHH
Confidence 344333 2222333 33344544444432222221 245778888876 7778888999888887 4 22
Q ss_pred h--------hhhhhhcC----CHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHH
Q 004992 369 N--------QAGIAHNG----GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDC 436 (720)
Q Consensus 369 ~--------~~~l~~~~----~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~ 436 (720)
. -+.+++.. .+|.+++-.+..+...+.+-+.+|.++..+-+.. +...
T Consensus 303 ~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~--vl~~------------------- 361 (415)
T PF12460_consen 303 VLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKS--VLLP------------------- 361 (415)
T ss_pred hcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHH--HHHH-------------------
Confidence 1 11233332 3556666666666667888888888887654421 1110
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCc
Q 004992 437 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 482 (720)
--+.++|-|++-+..++++++..++.+|..+..+.
T Consensus 362 -----------~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 362 -----------ELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred -----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 12347888899999999999999999999997776
No 165
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.016 Score=62.86 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=144.4
Q ss_pred cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHH-HhhhcCchhhHHHHhcCCcHHHHHhhcCC-CHH
Q 004992 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT-NLAHENSSIKTRVRMEGGIPPLVELLEFT-DTK 222 (720)
Q Consensus 145 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~ 222 (720)
....-+...+..|+...|+.+...... +.+.....+|. .+..... + ....++.+...+... ...
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e--------~akl~~~~aL~~~i~f~~~--~----~~~v~~~~~s~~~~d~~~~ 557 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFE--------EAKLKWYHALAGKIDFPGE--R----SYEVVKPLDSALHNDEKGL 557 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhch--------HHHHHHHHHHhhhcCCCCC--c----hhhhhhhhcchhhhhHHHH
Confidence 455666777888999999999887766 55566666666 2222111 1 113445555444332 223
Q ss_pred HHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHH-cCChHHHHHhhc
Q 004992 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLS 301 (720)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~-~~~l~~L~~ll~ 301 (720)
-...++.++.||+.-+...++.+.+...++.+-.++.++++..+..++..+.||..+.......+.+ ...++.....+.
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 3456788899999877777888888778888888888999999999999999998775555555555 456676666676
Q ss_pred cCChHHHHHHHHHHHHHhccCcchhh-HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 302 SCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
........+++.++..++.....+.. ..........+..++.+.++.++...+....|+..
T Consensus 638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 66677788888888777665555554 33334567888889999999999999999999655
No 166
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.16 Score=54.79 Aligned_cols=233 Identities=14% Similarity=0.171 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcC
Q 004992 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (720)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 157 (720)
.+...++.+...+. +|.-+.. .+..+..+|.+.+. .++..|+.+|.+++.+|..-...
T Consensus 222 LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stss------------aV~fEaa~tlv~lS~~p~alk~A---- 280 (948)
T KOG1058|consen 222 LQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSS------------AVIFEAAGTLVTLSNDPTALKAA---- 280 (948)
T ss_pred HHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCc------------hhhhhhcceEEEccCCHHHHHHH----
Confidence 44444555555444 2332222 34567778887766 88888999999988776654432
Q ss_pred ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 004992 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (720)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (720)
...++.++.+..+. .+....+.-|..+...+. .. -.|.+--++++|..++-+++..++.....|+.
T Consensus 281 -a~~~i~l~~kesdn-------nvklIvldrl~~l~~~~~---~i--l~~l~mDvLrvLss~dldvr~Ktldi~ldLvs- 346 (948)
T KOG1058|consen 281 -ASTYIDLLVKESDN-------NVKLIVLDRLSELKALHE---KI--LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS- 346 (948)
T ss_pred -HHHHHHHHHhccCc-------chhhhhHHHHHHHhhhhH---HH--HHHHHHHHHHHcCcccccHHHHHHHHHHhhhh-
Confidence 35666666555443 555555555555553222 21 23556677888999999999999999998885
Q ss_pred ChhcHHHHHhCCCHHHHHHhh-------cCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHH
Q 004992 238 NDENKNQIVECNALPTLILML-------RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 310 (720)
Q Consensus 238 ~~~~~~~i~~~g~l~~L~~ll-------~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~ 310 (720)
..+...+++ .|-+-+ .+++...|...+.++...+..-++.. +.+++.++..+.+.++.....
T Consensus 347 -srNvediv~-----~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~ 415 (948)
T KOG1058|consen 347 -SRNVEDIVQ-----FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASD 415 (948)
T ss_pred -hccHHHHHH-----HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHH
Confidence 233222222 121111 12344678888999999887666543 447899999999988877666
Q ss_pred HHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhh
Q 004992 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 311 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 362 (720)
.+..+.......+..+.. .+..++..+.. .+.++.+.|+|.++..+.
T Consensus 416 vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 416 VLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 666666665544444443 34455555533 567888999999999888
No 167
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.82 E-value=0.092 Score=54.15 Aligned_cols=288 Identities=15% Similarity=0.136 Sum_probs=155.7
Q ss_pred hHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcch
Q 004992 50 DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE 129 (720)
Q Consensus 50 ~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~ 129 (720)
.+..++...+..+++.|... ....+|..++-.|+.-+.+++.+..+..+|.+..++..+.+... +
T Consensus 14 Gen~rf~Dev~ylld~l~~~-----~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~----------d 78 (361)
T PF07814_consen 14 GENQRFADEVEYLLDGLESS-----SSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPD----------D 78 (361)
T ss_pred hhhhhHHHHHHHHHhhcccC-----CCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccc----------h
Confidence 34566777788888877733 34447999999999999999999999999999999999965544 1
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhc--cCCCccchh--hhHHHHHHHHHHHHhhhcCchhhHHHHh
Q 004992 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKR--HMDSNCSRA--VNSVIRRAADAITNLAHENSSIKTRVRM 205 (720)
Q Consensus 130 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 205 (720)
+..-..++.++.-++.+...-..+.+.+.+..++.++.- ..+...... ...........+...+. ... .
T Consensus 79 ~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~------~~~-~ 151 (361)
T PF07814_consen 79 DILALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCK------ELL-S 151 (361)
T ss_pred HHHHHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHH------HHH-h
Confidence 123333444444455443333444456667777888871 111000000 00000111111111111 000 0
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhc--------------cCChhcHHHHHhCCCHHHHHHhhcC----C------
Q 004992 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLA--------------FKNDENKNQIVECNALPTLILMLRS----E------ 261 (720)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~--------------~~~~~~~~~i~~~g~l~~L~~ll~~----~------ 261 (720)
.+... .--......-+..|+.++-.++ ...+..++.+...|++..++..+.+ .
T Consensus 152 ~~~~~---~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~ 228 (361)
T PF07814_consen 152 SGSSW---KSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAW 228 (361)
T ss_pred ccccc---cccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 00000 0000111222333444444332 1112346667777888888887751 1
Q ss_pred ------CHHHHHHHHHHHHHhhcCCcchHHHHHHc--CChHHHHHh-hc---cCChHHHHHHHHHHHHHhccCcchhhHH
Q 004992 262 ------DSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGL-LS---SCCSESQREAALLLGQFAATDSDCKVHI 329 (720)
Q Consensus 262 ------~~~v~~~a~~~L~nL~~~~~~~~~~~~~~--~~l~~L~~l-l~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 329 (720)
+......++++|-|.+..++.++...... +.++.+... +. ...+.....+++.+.|++..++.....+
T Consensus 229 ~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~ 308 (361)
T PF07814_consen 229 DDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEF 308 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhh
Confidence 11345678899999987777776666553 223322222 22 2234456778899999997776665555
Q ss_pred HhcCChHHHH---HHh-----------cCCCHHHHHHHHHHHHHHhh
Q 004992 330 VQRGAVRPLI---EML-----------QSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 330 ~~~~~~~~L~---~ll-----------~~~~~~v~~~a~~~L~~l~~ 362 (720)
...++...+. ..+ .+...++..-++++|.||++
T Consensus 309 ~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E 355 (361)
T PF07814_consen 309 ASPKLGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVE 355 (361)
T ss_pred hhhHhccchHHHHHhhcccccccccccccccchHHHHHHHhHHHhee
Confidence 5443322221 111 12344678888999999988
No 168
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.79 E-value=0.023 Score=49.54 Aligned_cols=133 Identities=13% Similarity=0.193 Sum_probs=102.4
Q ss_pred HHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccch
Q 004992 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176 (720)
Q Consensus 97 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~ 176 (720)
...+++.||+..|+++++++... +|...++...++.++..|-++....-......++..++.+...+..+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~------~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~--- 74 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEI------QPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDA--- 74 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCcc------CcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccc---
Confidence 35678899999999999887630 122226778888899888865555556667778899999998665322
Q ss_pred hhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhc
Q 004992 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 241 (720)
Q Consensus 177 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 241 (720)
.+...++.+|-++...++.....+..+--++.|+..|..++++++.++...+..|-.+.++.
T Consensus 75 ---~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 75 ---SILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred ---hHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 89999999999999867766666666677899999999999999999999888877644443
No 169
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.48 Score=54.14 Aligned_cols=225 Identities=15% Similarity=0.141 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (720)
.+|..+-++|..++..+.......+ -+..+.+.|.++.+... ...+...+.+|..+....+..-..++. ..++
T Consensus 669 ~vQkK~yrlL~~l~~~~s~~~~~~q--~i~~I~n~L~ds~qs~~----~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~I~ 741 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSSPSGEGLVEQ--RIDDIFNSLLDSFQSSS----SPAQASRLKCLKRLLKLLSAEHCDLIP-KLIP 741 (1176)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHH--HHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHHHhccHHHHHHHH-HHHH
Confidence 8999999999999955444322221 24444444444333211 167777888888887655521112222 2333
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcc-----CChhcH-HHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchH
Q 004992 211 PLVELLEFTDTKVQRAAAGALRTLAF-----KNDENK-NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (720)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~-----~~~~~~-~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~ 284 (720)
-++-.+++.+...++.+..+|..++. +....+ ...++. .++.+...+-.+...+....+-++..+........
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-FLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333478888899999988888882 011111 222222 34444444333333333332444455543323322
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhh
Q 004992 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (720)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (720)
....-.+++..+..+|.+.+++++..|+..+..++...++.........+++.++.|+++....++...-..|-.|...
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3333345677777888899999999999999999877666655555555889999999998999999999999988883
No 170
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.77 E-value=0.0021 Score=52.80 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhhhcHHHH
Q 004992 655 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 702 (720)
Q Consensus 655 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~l 702 (720)
|++++.+|..|++..|.+.|.+|+.+||..+.++++|.+|+.+.+..+
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~i 48 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSL 48 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHH
Confidence 567899999999999999999999999999999999999966544443
No 171
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.73 E-value=0.0033 Score=41.45 Aligned_cols=39 Identities=38% Similarity=0.550 Sum_probs=34.2
Q ss_pred hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc
Q 004992 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144 (720)
Q Consensus 94 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~ 144 (720)
++++..+.+.|+++.|+.++.+.+. +++..++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~------------~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDE------------EVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHc
Confidence 3467788899999999999997666 99999999999986
No 172
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.013 Score=63.55 Aligned_cols=242 Identities=17% Similarity=0.110 Sum_probs=161.7
Q ss_pred hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHH-Hhc-cChhhHHHHHHcCChHHHHHHHhccCC
Q 004992 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLA-VKPEHQQLIVDNGALSHLVNLLKRHMD 171 (720)
Q Consensus 94 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~-~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~ 171 (720)
..-+...++.|+...|+.+...... .-+.....+|. .+. ..... ...++.+.+.+.....
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e------------~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~ 555 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFE------------EAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEK 555 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhch------------HHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHH
Confidence 4444566778899999988876665 55666666666 333 11111 2334555555543322
Q ss_pred CccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHh-CCC
Q 004992 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNA 250 (720)
Q Consensus 172 ~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~-~g~ 250 (720)
. --.-.++..+.||++.++..+..+...-+++.+-.++..+++..+.+++..+.||..++.-....+.+ ...
T Consensus 556 ~-------~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~ 628 (748)
T KOG4151|consen 556 G-------LENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDR 628 (748)
T ss_pred H-------HHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccC
Confidence 1 11133677888999888888888888888888888888899999999999999999855444555555 445
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHH-HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHH
Q 004992 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (720)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 329 (720)
++.....+...+......++.++..++......+. ......+...+..++.+.+.+++...+..+.|+.....+....+
T Consensus 629 l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~ 708 (748)
T KOG4151|consen 629 LKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKI 708 (748)
T ss_pred chHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 66666666666666666777777766655555555 44456778889999999999999999998888765444455556
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004992 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (720)
Q Consensus 330 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 360 (720)
+....++.+..+-+-.....++.+..+|...
T Consensus 709 ~~~~~~~~l~~~~~~~~a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 709 FETEVMELLSGLQKLNRAPKREDAAPCLSAA 739 (748)
T ss_pred ccchHHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 6666666666554444445555555555443
No 173
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.68 E-value=0.077 Score=48.67 Aligned_cols=92 Identities=16% Similarity=0.246 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHH
Q 004992 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (720)
Q Consensus 262 ~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 341 (720)
++.+|..++.+++.|+...+... ...++.+...|.++++.+|+.|+.+|..|...+-.. + +..++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik---~-k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK---V-KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee---e-hhhhhHHHHHH
Confidence 57899999999999987766543 346899999999999999999999999997532111 1 12234778888
Q ss_pred hcCCCHHHHHHHHHHHHHHhh
Q 004992 342 LQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~ 362 (720)
+.++++.++..|..++..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999998
No 174
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.64 E-value=0.0026 Score=61.78 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=74.1
Q ss_pred eEEehhHHHHhhcchhHhhcccCCcCC-CCCCceecC-CCCHHHHHHHHHHHhcCCcccChhhHHHHHHHHhhhChHHHH
Q 004992 562 RRFYAHRICLLASSDAFRAMFDGGYRE-KDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLK 639 (720)
Q Consensus 562 ~~~~~h~~iL~~~s~~f~~~~~~~~~e-~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~ 639 (720)
+.|.|.+..|...=.||+..+.....+ ...+.|+|. .-+-.+|+-+++|++.....+++.|+..++.-+++++|+.|.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 789999999999999999999652222 222345553 357899999999999988899999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 004992 640 RLCEYTIAQDI 650 (720)
Q Consensus 640 ~~c~~~l~~~i 650 (720)
+.|-.|+..++
T Consensus 94 e~cl~y~~~~~ 104 (317)
T PF11822_consen 94 EECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHhH
Confidence 99998886654
No 175
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.62 E-value=0.012 Score=48.43 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=57.2
Q ss_pred EEEEE-CCeEEehhHHHHhhcchhHhhcccCCcCCC-CCCceecCCCCHHHHHHHHHHHhcCCcc---------------
Q 004992 555 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREK-DARDIEIPNIRWEVFELMMRFIYTGSVD--------------- 617 (720)
Q Consensus 555 v~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~-~~~~i~l~~~~~~~~~~~l~~~Yt~~~~--------------- 617 (720)
+++.. +|..|.+.+.+.. .|..++.|+.+.-.+. ....|.+++++..+++.+++|++...-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 44544 5689999999875 8999999997532221 2258999999999999999999643211
Q ss_pred ----cChhhHHHHHHHHhhhCh
Q 004992 618 ----VTLDIAQDLLRAADQYLL 635 (720)
Q Consensus 618 ----~~~~~~~~ll~~A~~~~~ 635 (720)
++.+.+.+|+.+|+++++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 344466777777777654
No 176
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.61 E-value=0.062 Score=46.94 Aligned_cols=130 Identities=14% Similarity=0.247 Sum_probs=99.6
Q ss_pred hHHHHHHcCChHHHHHHHhccCCC-ccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCC--CHHHHH
Q 004992 149 HQQLIVDNGALSHLVNLLKRHMDS-NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQR 225 (720)
Q Consensus 149 ~~~~~~~~~~l~~L~~lL~~~~~~-~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~ 225 (720)
+..+++..+|+..|++++.+.... +-.. ++...++.++..|..+. ..........++..+...+... +..+..
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~---~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q 78 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKG---EILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQ 78 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchH---HHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHH
Confidence 346778899999999999987641 1011 78888899998888743 2223355566778888877653 588999
Q ss_pred HHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 004992 226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (720)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~ 282 (720)
.++..|-++...++.....+.+.=-++.|+..|+..+++++..++..+-.|....++
T Consensus 79 ~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 79 RSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999999999986666677777766799999999999999999999988888755444
No 177
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.61 E-value=0.27 Score=55.31 Aligned_cols=198 Identities=17% Similarity=0.224 Sum_probs=119.3
Q ss_pred HHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhh
Q 004992 99 WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAV 178 (720)
Q Consensus 99 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~ 178 (720)
.+.+.|++..|++++.+.....+ ...+....+..|...+..+.+|+.+++.|+++.|+..+...-........
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~-------~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~ 184 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSR-------GRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQ 184 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccC-------cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCcccccc
Confidence 45568999999999976432111 12566667778877778899999999999999999998632211110001
Q ss_pred hHHHHHHHHHHHHhhhcCchh--h--HHHHhcC--------CcHHHHHhhcC----CCHHHHHHHHHHHHHhccCChhcH
Q 004992 179 NSVIRRAADAITNLAHENSSI--K--TRVRMEG--------GIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENK 242 (720)
Q Consensus 179 ~~v~~~a~~~L~~l~~~~~~~--~--~~~~~~~--------~i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~ 242 (720)
.++.+..+.++..+....... . ....... .+..+++.+.+ .++.+....+++|.+|+.++++.-
T Consensus 185 ~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m 264 (802)
T PF13764_consen 185 AEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM 264 (802)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence 145555555555554321110 0 0001111 25556665554 368999999999999999888877
Q ss_pred HHHHhCCCHHHHHHhhc--CC-CHHHHHHHHHHHHHhhcCC------cchHHHHHHcCChHHHHHhhccCChH
Q 004992 243 NQIVECNALPTLILMLR--SE-DSAIHYEAVGVIGNLVHSS------PNIKKEVLAAGALQPVIGLLSSCCSE 306 (720)
Q Consensus 243 ~~i~~~g~l~~L~~ll~--~~-~~~v~~~a~~~L~nL~~~~------~~~~~~~~~~~~l~~L~~ll~~~~~~ 306 (720)
+.+++. +...+++=. .. .++- ...+.+++.++..- ...+..+++.|++...+..+...-|.
T Consensus 265 ~~Lv~~--F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~ 334 (802)
T PF13764_consen 265 DALVEH--FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPS 334 (802)
T ss_pred HHHHHH--HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcc
Confidence 777764 333333211 11 1111 22366666665432 24567778888888888888765443
No 178
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.60 E-value=0.0047 Score=49.57 Aligned_cols=73 Identities=12% Similarity=0.044 Sum_probs=57.8
Q ss_pred hhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHh
Q 004992 448 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 448 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~ 521 (720)
.-+.++++++..+.++++.||..|+.+|.+++..........-....+.|..+..+++++||..| +.|-+|.+
T Consensus 24 ~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 24 YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 34568999999999999999999999999998765544443445667889999999999999655 66666553
No 179
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.55 E-value=0.0092 Score=58.20 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=72.9
Q ss_pred CCccccchhhhhcCCC--cceEEEEE-CCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHh
Q 004992 536 PTPQVYLGDQFVNNAT--LSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIY 612 (720)
Q Consensus 536 ~~~~~~~~~~~~~~~~--~~Dv~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y 612 (720)
+++..+.+..+.+..- +.|+.|.. .|+.|.+||..|++||++|..-+..-| .+..+|.-..+-+..|..+++|+|
T Consensus 131 qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~ly 208 (516)
T KOG0511|consen 131 QPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLY 208 (516)
T ss_pred CCcchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHH
Confidence 3344455444444443 44777665 578899999999999998865554322 233455444567899999999999
Q ss_pred cCCcccChhhHHHHHHHHhhhChHHHHHH
Q 004992 613 TGSVDVTLDIAQDLLRAADQYLLEGLKRL 641 (720)
Q Consensus 613 t~~~~~~~~~~~~ll~~A~~~~~~~l~~~ 641 (720)
-..-.+-++....++.+..+|++..|...
T Consensus 209 l~~na~~~~qynallsi~~kF~~e~l~~~ 237 (516)
T KOG0511|consen 209 LNTNAEWKDQYNALLSIEVKFSKEKLSLE 237 (516)
T ss_pred HhhhhhhhhHHHHHHhhhhhccHHHhHHH
Confidence 88555666777889999999998877654
No 180
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.51 E-value=0.015 Score=46.73 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhh--hcCCHHHHHHH
Q 004992 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIA--HNGGLVPLLKL 385 (720)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~--~~~~i~~l~~l 385 (720)
|+.++..|..++.+-+....... ..+++.++..+.++++.||..|+.+|.|++... +..+. -..+.+.|.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~-----~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVA-----RGEILPYFNEIFDALCKL 76 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 45566667766644333333332 347899999999999999999999999999832 22222 23467778888
Q ss_pred hcCCChhHHHHHHHHHHh
Q 004992 386 LDSKNGSLQHNAAFALYG 403 (720)
Q Consensus 386 l~~~~~~v~~~a~~~L~~ 403 (720)
+.++++.|+..| ..|-+
T Consensus 77 ~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 77 SADPDENVRSAA-ELLDR 93 (97)
T ss_pred HcCCchhHHHHH-HHHHH
Confidence 899999998766 44433
No 181
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.46 E-value=0.29 Score=46.55 Aligned_cols=226 Identities=11% Similarity=0.115 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHhc-cChhhHHHHHHc-CChHHHHHHHhccCC----CccchhhhHHHHHHHHHHHHhhhcCchhhHHH
Q 004992 130 HEVEKGSAFALGLLA-VKPEHQQLIVDN-GALSHLVNLLKRHMD----SNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (720)
Q Consensus 130 ~~v~~~a~~~L~~L~-~~~~~~~~~~~~-~~l~~L~~lL~~~~~----~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 203 (720)
++.|+.|+.-|+.-- ..|+....+-.+ |.+..|++=+-+..+ +.-......-..+|+..|..+++ +++.|..+
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~F 87 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMPF 87 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHHH
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHHH
Confidence 367777777776655 445554443322 555554443322211 11111122455667777777888 88899999
Q ss_pred HhcCCcHHHHHhhcCCC-----HHHHHHHHHHHHHhccC-ChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 004992 204 RMEGGIPPLVELLEFTD-----TKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 204 ~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~ 277 (720)
.+..+.-.|..+|+..+ +.+|...+++++.+... +++....+.+++++|..++.+..++.-.+..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99988888888886543 77899999999999963 3455666778999999999999988888888888888886
Q ss_pred cCCcchHHHHH--------HcCChHHHH-HhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHH-HHH----Hhc
Q 004992 278 HSSPNIKKEVL--------AAGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP-LIE----MLQ 343 (720)
Q Consensus 278 ~~~~~~~~~~~--------~~~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~-L~~----ll~ 343 (720)
.++... ..+. -..++..++ .+..+.++++-+.+.++-..++. ++..+..+.. .+|. |-+ .+-
T Consensus 168 ~dd~GL-~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~--~LP~~Lrd~~f~~~l 243 (262)
T PF04078_consen 168 LDDVGL-NYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ--CLPDQLRDGTFSNIL 243 (262)
T ss_dssp HSHHHH-HHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH--HS-GGGTSSTTTTGG
T ss_pred cchhHH-HHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH--hCcHHHhcHHHHHHH
Confidence 553321 1111 112333333 34456678888899988888874 4444443332 1221 111 011
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004992 344 SPDVQLREMSAFALGRL 360 (720)
Q Consensus 344 ~~~~~v~~~a~~~L~~l 360 (720)
.+|+.++..-...+.|+
T Consensus 244 ~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 244 KDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp CS-HHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 23666666655555554
No 182
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.46 E-value=0.042 Score=55.72 Aligned_cols=297 Identities=17% Similarity=0.172 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHccChhhHH-HHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhcc------Chhh
Q 004992 77 RAAAKRATHVLAELAKNEEVVN-WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV------KPEH 149 (720)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~------~~~~ 149 (720)
+.+|.+++.+|..++..-...+ .+.+ ....+..-+.+.. |.++..++.++..+.. .|+.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~------------p~~~l~~a~ll~~lg~~lv~~~~P~~ 334 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEAD------------PSIQLHGAKLLEELGTGLIQQYKPDS 334 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCC------------hHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 3489999999999887522211 1111 1122222223333 3889999988888761 1222
Q ss_pred HHHHHHcCChHHH------HHHHhccCCCccchhhhHHHHHHHHHHHHhhhcC----chhhHHHHhcCCcHHHHHhh-cC
Q 004992 150 QQLIVDNGALSHL------VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN----SSIKTRVRMEGGIPPLVELL-EF 218 (720)
Q Consensus 150 ~~~~~~~~~l~~L------~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~ll-~~ 218 (720)
-+.-...+.+-.+ -...-++..+ .....+|..+.++.... ++.++ -..+.+..-+ .+
T Consensus 335 ~k~~~q~~~fw~~~l~~p~~~~~YDs~~~-------Tl~~s~Cdals~i~~~~f~~lpn~~~-----T~~~~Fl~GC~d~ 402 (728)
T KOG4535|consen 335 TKAPDQRAPFWTMMLNGPLPRALYDSEHP-------TLQASACDALSSILPEAFSNLPNDRQ-----TLCITFLLGCNDS 402 (728)
T ss_pred ccchhhhccHHHHHccCCChhhhhhhcCC-------CchhHHHHHHhhcCchhhcCCCCcch-----hhhHHHHhcccch
Confidence 1111111111111 0111122111 55566677777765311 11110 0111111111 23
Q ss_pred CCHHHHHHHHHHHHHhccCChhcHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc----CCcc--hHHHHHHcC
Q 004992 219 TDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVH----SSPN--IKKEVLAAG 291 (720)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~----~~~~--~~~~~~~~~ 291 (720)
++.-++..|.+++.-+.- ++..+.... -..+...+...+.+..-.+|..+.|+++|++. ..|. ....-+..-
T Consensus 403 ~~~lv~~aA~Ra~~VyVL-Hp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ 481 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVL-HPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL 481 (728)
T ss_pred HHHHHHHHHHhhceeEEe-ccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence 345567777888777765 343333322 23356666667777777899999999999972 2222 111111112
Q ss_pred ChHHHHHhhcc---CChHHHHHHHHHHHHHhccCcchhhHHHhc-------CChHHHHHH-hcCCCHHHHHHHHHHHHHH
Q 004992 292 ALQPVIGLLSS---CCSESQREAALLLGQFAATDSDCKVHIVQR-------GAVRPLIEM-LQSPDVQLREMSAFALGRL 360 (720)
Q Consensus 292 ~l~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~~~~~L~~l-l~~~~~~v~~~a~~~L~~l 360 (720)
.+..++..... ...+++.++.++|+|+... .+.+.+. +.+..++.. .......|+=+++.+++||
T Consensus 482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNL 557 (728)
T KOG4535|consen 482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNL 557 (728)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHh
Confidence 23333333332 2478899999999998632 1212111 111222111 2235678999999999999
Q ss_pred hhhhcCcch--hhhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhcccC
Q 004992 361 AQVITDMHN--QAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADN 407 (720)
Q Consensus 361 ~~~~~~~~~--~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~ 407 (720)
.. ++.. +..-+.....+.|..++ +..|..||.+|+.+|..-..-
T Consensus 558 fk---n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 558 FK---NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred hc---CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 98 4433 22222233456666666 567899999999999876543
No 183
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.45 E-value=0.046 Score=51.77 Aligned_cols=180 Identities=13% Similarity=0.146 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHc
Q 004992 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (720)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~ 156 (720)
-...|+..|..++.+|+.|..+.++.+.-.|...|...+... +++ .+|..++.+++.|. ++++...-+...
T Consensus 66 RVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r------~~E-~LRLtsLGVIgaLvK~d~~evi~fLl~t 138 (262)
T PF04078_consen 66 RVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTR------PFE-YLRLTSLGVIGALVKTDDPEVISFLLQT 138 (262)
T ss_dssp HHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SH------HHH-HHHHHHHHHHHHHHTT--HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhcccccc------ccc-hhhHhHHHHHHHHHcCCcHHHHHHHHhh
Confidence 356777788888989999999999998888889997765531 222 78999999999999 678888888899
Q ss_pred CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhh-------HHHHhcCCcHHH-HHhhcCCCHHHHHHHH
Q 004992 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-------TRVRMEGGIPPL-VELLEFTDTKVQRAAA 228 (720)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~-------~~~~~~~~i~~L-~~ll~~~~~~v~~~a~ 228 (720)
+++|..++.++..+. --+..|..++..+..++.... +...-..++..+ ..+.+++++.+.+...
T Consensus 139 EiiplcLr~me~Gse--------lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhII 210 (262)
T PF04078_consen 139 EIIPLCLRIMEFGSE--------LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHII 210 (262)
T ss_dssp THHHHHHHHHHHS-H--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHH
T ss_pred chHHHHHHHHHhccH--------HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 999999999998755 555667777777765332111 111111223333 3455778999999999
Q ss_pred HHHHHhccCChhcHHHHHhCCCHHHHHH-----hhcCCCHHHHHHHHHHHHHh
Q 004992 229 GALRTLAFKNDENKNQIVECNALPTLIL-----MLRSEDSAIHYEAVGVIGNL 276 (720)
Q Consensus 229 ~~L~~L~~~~~~~~~~i~~~g~l~~L~~-----ll~~~~~~v~~~a~~~L~nL 276 (720)
++...|+. ++..+..+.+ .+|..+. -+-.+|+.++.+-...+.|+
T Consensus 211 rCYlRLsd-nprar~aL~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 211 RCYLRLSD-NPRAREALRQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHHHTT-STTHHHHHHH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHHHcc-CHHHHHHHHH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999996 7777777764 2333211 11124777888777777776
No 184
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=1.9 Score=46.85 Aligned_cols=262 Identities=13% Similarity=0.096 Sum_probs=142.4
Q ss_pred hHHHHHHHHHHHHHHcc--C-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHH
Q 004992 76 DRAAAKRATHVLAELAK--N-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL 152 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~--~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~ 152 (720)
++...+-|++.++++.. + +.-..-+.+.=+++.++..+++... -++.+|+..+..+. .+..+.
T Consensus 429 narq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg------------fL~Srace~is~~e--eDfkd~ 494 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG------------FLKSRACEFISTIE--EDFKDN 494 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc------------chHHHHHHHHHHHH--Hhcccc
Confidence 44456667788877765 2 2222223333356667777787776 78999999999996 555555
Q ss_pred HHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhc--CCcHHHHHhhcCCCHHHHHHHHHH
Q 004992 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELLEFTDTKVQRAAAGA 230 (720)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~ 230 (720)
.+...+.....++++++.- .++..|+-++.-+..+. .....+... +.++.|+.+-+.-+.++...++..
T Consensus 495 ~ill~aye~t~ncl~nn~l--------pv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~ 565 (970)
T COG5656 495 GILLEAYENTHNCLKNNHL--------PVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMES 565 (970)
T ss_pred hHHHHHHHHHHHHHhcCCc--------chhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHH
Confidence 5556677778888888554 78888888888887744 333333321 223333444344444554444444
Q ss_pred HH-HhccCChhcHHHHHhC---CCHHHHHHhhcCCC------HHHHHHHHHHHHHhhc------CCcchHHHHHHcCChH
Q 004992 231 LR-TLAFKNDENKNQIVEC---NALPTLILMLRSED------SAIHYEAVGVIGNLVH------SSPNIKKEVLAAGALQ 294 (720)
Q Consensus 231 L~-~L~~~~~~~~~~i~~~---g~l~~L~~ll~~~~------~~v~~~a~~~L~nL~~------~~~~~~~~~~~~~~l~ 294 (720)
+. ..+..-......++.+ ..+.....++..++ .+=+..|...|..+.. ..+..-+ -......|
T Consensus 566 fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~le~slyp 644 (970)
T COG5656 566 FVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YLEVSLYP 644 (970)
T ss_pred HHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HHHHHHHH
Confidence 33 2221111112222221 12333333443321 1223344444444421 1111111 12345666
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCC-HHHHHHHHHHHHHHhhh
Q 004992 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQV 363 (720)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~~ 363 (720)
.+--++.+...+.-.+|+..+-+.+-...+.- -+.-|+.+.+.+++.+.. ..-.+.+..++.|+...
T Consensus 645 vi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfity 712 (970)
T COG5656 645 VISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITY 712 (970)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHh
Confidence 66667777777788888888877753111110 112245555566666554 36678888999999983
No 185
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.026 Score=49.72 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=71.9
Q ss_pred CCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcc----------------------
Q 004992 560 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVD---------------------- 617 (720)
Q Consensus 560 ~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~---------------------- 617 (720)
+|+.|.+...+.. .|..+.+++...--......|.++.++...|..++.|+|..+-.
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 5678888888765 77777777753211111157999999999999999999874421
Q ss_pred ---cChhhHHHHHHHHhhhChHHHHHHHHHHHHhcC---ChhhHHHH
Q 004992 618 ---VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSM 658 (720)
Q Consensus 618 ---~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i---~~~~~~~~ 658 (720)
++..++.+++.+|+++++++|.++|.......+ +++.....
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~ 138 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREI 138 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 234578999999999999999999998776655 44443333
No 186
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.53 Score=52.71 Aligned_cols=246 Identities=13% Similarity=0.116 Sum_probs=129.3
Q ss_pred cCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhh---cCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 004992 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (720)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (720)
.+.++.+++.+......+.......-...|+..+++++. .....+ ...+.-.++.++..++++.-.+|..||+++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 356777788887443332222222556778888888774 222222 2333345567777788888999999999999
Q ss_pred HhccCChhcHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcchHHHHHH--cCChHHHHHhhccCChHHHH
Q 004992 233 TLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQR 309 (720)
Q Consensus 233 ~L~~~~~~~~~~i~~~g~l~~L~~ll~-~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~ 309 (720)
..+.-+-.....+ ..++....+.|. +.+-.|+..|+-+|..+..+.+.....+.. .+.+..|+.+.+.-+.+...
T Consensus 488 ~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt 565 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT 565 (1010)
T ss_pred HHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH
Confidence 9994222222222 235777777777 667789999999999997665544222221 23344455555543333333
Q ss_pred HHHH-HHHHHhccCcchhhHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHHHhhhhcCcchhhhhh---hcCCH
Q 004992 310 EAAL-LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQVITDMHNQAGIA---HNGGL 379 (720)
Q Consensus 310 ~a~~-~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~---~~~~i 379 (720)
.+.. .+...+..-......+. ..+.....+++.+ .+.+-..+|.++|..+......-++...+. +...+
T Consensus 566 ~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l 644 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVL 644 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3332 22222211111111121 2344555566652 233445556666665554221222222221 12234
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcc
Q 004992 380 VPLLKLLDSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 380 ~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (720)
+.+-.++.+.-.++-+.++..+..++
T Consensus 645 ~vi~~iL~~~i~dfyeE~~ei~~~~t 670 (1010)
T KOG1991|consen 645 PVIGFILKNDITDFYEELLEIVSSLT 670 (1010)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 44444555555555555555555553
No 187
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.32 E-value=0.51 Score=48.82 Aligned_cols=122 Identities=8% Similarity=0.151 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhhc---CCcchHHHHHH-cCChHHHHHhhccCC---hHHHHHHHHHHHHHhccCcchhhHHHhcCChHHH
Q 004992 266 HYEAVGVIGNLVH---SSPNIKKEVLA-AGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (720)
Q Consensus 266 ~~~a~~~L~nL~~---~~~~~~~~~~~-~~~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 338 (720)
.+..++++..+.. .....-..+++ ..++..|..++++.. +.+...|+.++..+...++.....+.+.|+++.+
T Consensus 77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~ 156 (379)
T PF06025_consen 77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF 156 (379)
T ss_pred HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence 4455566666655 22223334455 556677777777653 6788899999999998888888899999999999
Q ss_pred HHHhc-C---CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCC
Q 004992 339 IEMLQ-S---PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKN 390 (720)
Q Consensus 339 ~~ll~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~ 390 (720)
++.+. . ++.++....-.+|..+|. +....+.+.+.+.++.+++++.+++
T Consensus 157 L~~i~~~~i~~s~e~l~~lP~~l~AicL---N~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 157 LDAITAKGILPSSEVLTSLPNVLSAICL---NNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHhHHhc---CHHHHHHHHhcChHHHHHHHhCCHH
Confidence 99987 3 567888888899999999 7888888999999999999886653
No 188
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.31 E-value=0.84 Score=48.98 Aligned_cols=281 Identities=16% Similarity=0.137 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHH
Q 004992 76 DRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~ 153 (720)
+...+..|+..+.....+ |+..+. ++..+++|+++.+. .||.+|.+.|..+| ++++....+
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~------------~iR~~aik~lp~~ck~~~~~v~kv 97 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDV------------QIRKQAIKGLPQLCKDNPEHVSKV 97 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSH------------HHHHHHHHHGGGG--T--T-HHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH------------HHHHHHHHhHHHHHHhHHHHHhHH
Confidence 445789999999998885 876665 56889999998877 99999999999999 777776554
Q ss_pred HHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc---CCCHHHHHHHHHH
Q 004992 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE---FTDTKVQRAAAGA 230 (720)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~ 230 (720)
...|+++|...+. .-...+-.+|..+...++. +.+..++..+. .+++.+|+.++..
T Consensus 98 -----aDvL~QlL~tdd~--------~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkF 156 (556)
T PF05918_consen 98 -----ADVLVQLLQTDDP--------VELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKF 156 (556)
T ss_dssp -----HHHHHHHTT---H--------HHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHH
T ss_pred -----HHHHHHHHhcccH--------HHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHH
Confidence 4788889986655 4445555666666654442 22344444443 5678899988877
Q ss_pred HHHhcc--CChhcH--HHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc---C-CcchHHHHHHcCChHHHHHhhc-
Q 004992 231 LRTLAF--KNDENK--NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH---S-SPNIKKEVLAAGALQPVIGLLS- 301 (720)
Q Consensus 231 L~~L~~--~~~~~~--~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~---~-~~~~~~~~~~~~~l~~L~~ll~- 301 (720)
|..=.. ...... ..+-+. ++..+-++|.+-..+--.....+|..+-. . ....++. +++.+.+...
T Consensus 157 l~~kl~~l~~~~~~p~~E~e~~-i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~L 230 (556)
T PF05918_consen 157 LREKLKPLKPELLTPQKEMEEF-IVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADL 230 (556)
T ss_dssp HHHHGGGS-TTTS---HHHHHH-HHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTT
T ss_pred HHHHHhhCcHHHhhchHHHHHH-HHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhcc
Confidence 753332 111111 223222 45566677776555444555666776654 1 1222222 3444443331
Q ss_pred -----cCChHHHHHHHH----HHHHHhccCcc-hhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhh
Q 004992 302 -----SCCSESQREAAL----LLGQFAATDSD-CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQA 371 (720)
Q Consensus 302 -----~~~~~~~~~a~~----~L~~l~~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 371 (720)
..+++.....+. ++.-++.+... ....++...++|.+-.+ ....+...+.++..++...+..+ .
T Consensus 231 d~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d-~- 304 (556)
T PF05918_consen 231 DQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD-A- 304 (556)
T ss_dssp TS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT---------HHHHHHHHHHHHHTT----T-H-
T ss_pred CCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc-H-
Confidence 122333222222 22222221111 11122233455544443 45667777777777776332222 1
Q ss_pred hhhhcCCHHHHHHHhc----C------CChhHHHHHHHHHHhcccCCCc
Q 004992 372 GIAHNGGLVPLLKLLD----S------KNGSLQHNAAFALYGLADNEDN 410 (720)
Q Consensus 372 ~l~~~~~i~~l~~ll~----~------~~~~v~~~a~~~L~~l~~~~~~ 410 (720)
...++.+..+|. . -+....++.+.++.+|+....+
T Consensus 305 ----~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 305 ----RQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp ----HHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred ----HHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 223455555442 1 1345678888888899875443
No 189
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.29 E-value=0.19 Score=46.08 Aligned_cols=109 Identities=26% Similarity=0.309 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 004992 130 HEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (720)
Q Consensus 130 ~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (720)
|.+|..++.+++.|+ ..|..- ...++.+...|.+.++ .||..|+.+|..|...+. .+ -.|-
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~--------~VR~~al~~Ls~Li~~d~-ik----~k~~ 63 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDP--------LVRKTALLVLSHLILEDM-IK----VKGQ 63 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCH--------HHHHHHHHHHHHHHHcCc-ee----ehhh
Confidence 589999999999999 666543 3357899999998877 999999999999987332 11 1233
Q ss_pred -cHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC
Q 004992 209 -IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (720)
Q Consensus 209 -i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~ 260 (720)
+..++.++.+++++++..|..++..+... .....+.+ .++.++..+.+
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~--~~~~~i~~--~~~e~i~~l~~ 112 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKK--RNPNIIYN--NFPELISSLNN 112 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHh--ccchHHHH--HHHHHHHHHhC
Confidence 37788888999999999999999999952 12233332 35555554443
No 190
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.26 Score=53.06 Aligned_cols=160 Identities=19% Similarity=0.114 Sum_probs=108.8
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHH-hcCCCHHHHHHHHHHHHHHhhhhcCcchh
Q 004992 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQVITDMHNQ 370 (720)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 370 (720)
.=+.+-+++.+.++-+|...+.++..--.+... .+.+..|+.. ..+.+.+||++|+-+|+-++. ++
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~--~d---- 586 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF--RD---- 586 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEe--cC----
Confidence 345566677777888888777665532222222 3456777777 577899999999999998887 22
Q ss_pred hhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhh
Q 004992 371 AGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 449 (720)
Q Consensus 371 ~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (720)
...++..+.+| .+-|+.||..++.+|+-.|.......
T Consensus 587 -----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------------------------------------- 624 (929)
T KOG2062|consen 587 -----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------------------------------------- 624 (929)
T ss_pred -----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------------------------------------
Confidence 23456677777 56799999999999998887655422
Q ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchh
Q 004992 450 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQ 508 (720)
Q Consensus 450 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 508 (720)
.+..|-.+.+++..-||..|+.++..+........-..-.+....+.+++.+++++.
T Consensus 625 --Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 625 --AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred --HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 233344566788888999999888887443221111223456678888888888773
No 191
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.78 Score=49.76 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=102.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHH
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~ 289 (720)
..+-+-|+++|+-+|-..++.|+.|-. + .+.+. .+|.+...|.+.+.-||++|.-++..+-...+. .-
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLkE--~----ELlep-l~p~IracleHrhsYVRrNAilaifsIyk~~~~-----L~ 169 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLKE--P----ELLEP-LMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-----LI 169 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcCc--H----HHhhh-hHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-----hc
Confidence 445566789999999998888888774 2 33443 788888999999999999999999888543221 11
Q ss_pred cCChHHHHHhhc-cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcc
Q 004992 290 AGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMH 368 (720)
Q Consensus 290 ~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (720)
..+-..+-..|. ..++..+++|...|... +++...... ...+.-+.+-++..+...+..+...+. ..+.
T Consensus 170 pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~ErAl~Yl-----~~~idqi~~~~~~LqlViVE~Irkv~~--~~p~ 239 (948)
T KOG1058|consen 170 PDAPELIESFLLTEQDPSCKRNAFLMLFTT---DPERALNYL-----LSNIDQIPSFNDSLQLVIVELIRKVCL--ANPA 239 (948)
T ss_pred CChHHHHHHHHHhccCchhHHHHHHHHHhc---CHHHHHHHH-----HhhHhhccCccHHHHHHHHHHHHHHHh--cCHH
Confidence 233344444443 44677777776655543 222211111 111111222344555555555555554 1111
Q ss_pred hhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCc
Q 004992 369 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 410 (720)
Q Consensus 369 ~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (720)
. +...+..+..+|.+.++.++..|+.+|..++.++..
T Consensus 240 ~-----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~a 276 (948)
T KOG1058|consen 240 E-----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTA 276 (948)
T ss_pred H-----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHH
Confidence 1 123456666677666666666666666666655443
No 192
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.18 E-value=0.26 Score=50.84 Aligned_cols=258 Identities=14% Similarity=0.149 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (720)
.+|+.++--|..-+.++.++..+..+|..+.+++.+.+..++ .+...++.++..+...+......+...+...
T Consensus 37 s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d-------~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ 109 (361)
T PF07814_consen 37 SVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD-------DILALATAAILYVLSRDGLNMHLLLDRDSLR 109 (361)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch-------HHHHHHHHHHHHHHccCCcchhhhhchhHHH
Confidence 789999988888889999999999999999999999776653 3445555555554443443333444455566
Q ss_pred HHHHhhcC--C---CHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhh------c---CCCHHHHHHHHHHHHHh
Q 004992 211 PLVELLEF--T---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML------R---SEDSAIHYEAVGVIGNL 276 (720)
Q Consensus 211 ~L~~ll~~--~---~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll------~---~~~~~v~~~a~~~L~nL 276 (720)
.++.++.- . .......-...+.. ..+ +.+..+...+ . .....-+..++.++..+
T Consensus 110 ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l 177 (361)
T PF07814_consen 110 LLLKLLKVDKSLDVPSDSDSSRKKNLSK-----------VQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESL 177 (361)
T ss_pred HHHHHhccccccccccchhhhhhhhhhH-----------HHH-HHHHHHHHHHhccccccccCCcccccccHHHHHHHHH
Confidence 66777761 1 00000000000000 000 0111111111 0 11122233344444444
Q ss_pred h--------------cCCcchHHHHHHcCChHHHHHhhcc----CC------------hHHHHHHHHHHHHHhccCcchh
Q 004992 277 V--------------HSSPNIKKEVLAAGALQPVIGLLSS----CC------------SESQREAALLLGQFAATDSDCK 326 (720)
Q Consensus 277 ~--------------~~~~~~~~~~~~~~~l~~L~~ll~~----~~------------~~~~~~a~~~L~~l~~~~~~~~ 326 (720)
+ ...+..+.++...|+++.++.++.+ .. ......+..+|-+.+..++.+.
T Consensus 178 ~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq 257 (361)
T PF07814_consen 178 VRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQ 257 (361)
T ss_pred HHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccch
Confidence 2 1123455667778889999988862 10 1234457788888887677776
Q ss_pred hHHHhc--CChHHHHHH-h---cCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHH---HHHHh----c------
Q 004992 327 VHIVQR--GAVRPLIEM-L---QSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVP---LLKLL----D------ 387 (720)
Q Consensus 327 ~~~~~~--~~~~~L~~l-l---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~---l~~ll----~------ 387 (720)
...... +.++.+... + ......+...+++.+.|++. ..+..+..+...+.... +...+ .
T Consensus 258 ~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn--~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~ 335 (361)
T PF07814_consen 258 SYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTN--NNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVP 335 (361)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCC--CCccchHhhhhhHhccchHHHHHhhccccccccccc
Confidence 665543 233333222 2 22344556788888889987 34444455544432222 11111 1
Q ss_pred -CCChhHHHHHHHHHHhcccCCC
Q 004992 388 -SKNGSLQHNAAFALYGLADNED 409 (720)
Q Consensus 388 -~~~~~v~~~a~~~L~~l~~~~~ 409 (720)
....+...-++.++.||+...+
T Consensus 336 ~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 336 EESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred ccccchHHHHHHHhHHHheeeCc
Confidence 1234567788888999887543
No 193
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.16 E-value=0.011 Score=48.84 Aligned_cols=75 Identities=16% Similarity=0.262 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHH-HhcchhHHHHHHHHHHhhcCC-cccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 449 HGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 449 ~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
...++..|+.++ .+.++.+...||.=|+.++.. +.++.++.+.|+...+.+|+.++|++||..|..++..+..+.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 456888999999 455888888899999999765 457778888899999999999999999999999999887653
No 194
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=1.2 Score=49.27 Aligned_cols=339 Identities=15% Similarity=0.178 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHH------HHh
Q 004992 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR------VRM 205 (720)
Q Consensus 132 v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~------~~~ 205 (720)
+.-.+++.|..|+.+..+...+++.+++..|+.+-+-+ +.--..-.||+.+.. ....-+. .+.
T Consensus 369 l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s----------~~~~g~s~cly~~~~-~q~~mervc~~p~~v~ 437 (1516)
T KOG1832|consen 369 LLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS----------ETFYGLSSCLYTIGS-LQGIMERVCALPLVVI 437 (1516)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch----------hhhhhHHHHHHHHhh-hhhHHHHHhhccHHHH
Confidence 34456677777776678888899999988776654332 323334456666654 2211111 112
Q ss_pred cCCcHHHHHhhcCCC------HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC--------CC---------
Q 004992 206 EGGIPPLVELLEFTD------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--------ED--------- 262 (720)
Q Consensus 206 ~~~i~~L~~ll~~~~------~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~--------~~--------- 262 (720)
..++..-+.++.... ..+-..++..++.+. +.+-....+..|+.++++ .+
T Consensus 438 ~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail-------~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ 510 (1516)
T KOG1832|consen 438 HQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAIL-------DAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMIS 510 (1516)
T ss_pred HHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhh
Confidence 233444455554332 233333444433333 122223445555555542 11
Q ss_pred --HHHHHHHHHHHHHhh-----cCCcchHHHHHHcCChHHHHHhhccCC------hHHHHHHHHHHHHHhccCcc-----
Q 004992 263 --SAIHYEAVGVIGNLV-----HSSPNIKKEVLAAGALQPVIGLLSSCC------SESQREAALLLGQFAATDSD----- 324 (720)
Q Consensus 263 --~~v~~~a~~~L~nL~-----~~~~~~~~~~~~~~~l~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~----- 324 (720)
...-...+.++.... ...+..++.-+..+..+..+.-+..+. ....++.+|-+..+....+.
T Consensus 511 ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~ 590 (1516)
T KOG1832|consen 511 SSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQ 590 (1516)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhc
Confidence 111223344443322 112233333344455554444333221 23344555555544432221
Q ss_pred --hhhHHHhcCChHHHHHHhcC--------CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhc--------CCHHHHHHHh
Q 004992 325 --CKVHIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQVITDMHNQAGIAHN--------GGLVPLLKLL 386 (720)
Q Consensus 325 --~~~~~~~~~~~~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~--------~~i~~l~~ll 386 (720)
....+...+++..++.+... +..++...|+..|.-+.. -+..+..+... .++..++..-
T Consensus 591 w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~---iP~iq~~La~~~~~n~~aydGiaIiL~~a 667 (1516)
T KOG1832|consen 591 WPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS---IPDIQKALAHATLSNNRAYDGIAIILDAA 667 (1516)
T ss_pred chHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe---cchHHHHHHHHHhhcccccCceEEEeecc
Confidence 22335566788888887642 234677788888877776 56665554332 1333343333
Q ss_pred c---C-CChhHHHHHHHHHHhcccCC-CchhHHHhhcccccccchhhhhhhh-HHHHHHHHHHHHHh-hhhhhHHHHHHH
Q 004992 387 D---S-KNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQAT-KDCVAKTLKRLEEK-IHGRVLNHLLYL 459 (720)
Q Consensus 387 ~---~-~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~v~~L~~~~~~~~~~-~~~~~~~~~~l~~~-~~~~~~~~L~~l 459 (720)
. + .++++++.|+.+|.|+...+ .++...+..=+-+.=..-.+..+.. -+-+...+..+... ...+.+..|+++
T Consensus 668 ~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~L 747 (1516)
T KOG1832|consen 668 NGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKL 747 (1516)
T ss_pred cccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 1 2 37999999999999996544 5555433321110000000111111 12234444444443 366789999999
Q ss_pred HHhcch-----hHHHHHHHHHHhhcCCcccchhhhcc
Q 004992 460 MRVAEK-----GVQRRVALALAHLCSPDDQRTIFIDG 491 (720)
Q Consensus 460 l~~~~~-----~v~~~a~~~L~~l~~~~~~~~~~~~~ 491 (720)
++-..| .+|..|+++|.-|++++.-++++...
T Consensus 748 l~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 748 LQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred HhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 986544 58999999999999999877765443
No 195
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.14 E-value=0.78 Score=47.48 Aligned_cols=168 Identities=10% Similarity=0.099 Sum_probs=112.9
Q ss_pred HHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhcc-----C--------CC----ccc-h--------hhhHHHHHHHH
Q 004992 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRH-----M--------DS----NCS-R--------AVNSVIRRAAD 187 (720)
Q Consensus 135 ~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~-----~--------~~----~~~-~--------~~~~v~~~a~~ 187 (720)
.|+..|-.+. ..+..-..+.+.+++..+++.++.. . .. ... . -...+++..++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 3556666666 5566667778888999998888521 1 00 000 0 01244455555
Q ss_pred HHHHhhh-c--CchhhHHHHh-cCCcHHHHHhhcCCC---HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc-
Q 004992 188 AITNLAH-E--NSSIKTRVRM-EGGIPPLVELLEFTD---TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR- 259 (720)
Q Consensus 188 ~L~~l~~-~--~~~~~~~~~~-~~~i~~L~~ll~~~~---~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~- 259 (720)
.+..+.. . ....-+.+.+ ......|...+++.. +.+...|+.++..+...+|..-..+.+.|+++.+++.+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~ 162 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA 162 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence 5555555 1 1111122334 344556666666653 889999999999999988999999999999999999887
Q ss_pred C---CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC
Q 004992 260 S---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (720)
Q Consensus 260 ~---~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~ 303 (720)
. ++.++....-.+++.||-+ ....+.+.+.+.++.++.++.+.
T Consensus 163 ~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 163 KGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred cCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCH
Confidence 4 3567877778888888755 45557788889999999998764
No 196
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.37 Score=51.99 Aligned_cols=161 Identities=21% Similarity=0.194 Sum_probs=108.2
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCcchHH
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~l-l~~~~~~v~~~a~~~L~nL~~~~~~~~~ 285 (720)
++-+.+-+++.+.++-+|.....++..--.+. .+.+++..|++. .++.+.+||+.|+-+|+-++..+++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence 44556667778888888887766554222111 124567777776 67789999999999999998776653
Q ss_pred HHHHcCChHHHHHhhc-cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhh
Q 004992 286 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (720)
Q Consensus 286 ~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (720)
++..+++|. +-++.+|..++.+|+-.|++. ..+. .+..|-.+..++..-||..|+-++..+..-.
T Consensus 590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 455667776 457999999999999887643 2222 3455666667888899999999988777511
Q ss_pred cCcchhhhhhhcCCHHHHHHHhcCCChhH
Q 004992 365 TDMHNQAGIAHNGGLVPLLKLLDSKNGSL 393 (720)
Q Consensus 365 ~~~~~~~~l~~~~~i~~l~~ll~~~~~~v 393 (720)
.+..+... .++...+.+.+.+++.+.
T Consensus 656 -t~~~~pkv--~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 656 -TEQLCPKV--NGFRKQLEKVINDKHEDG 681 (929)
T ss_pred -ccccCchH--HHHHHHHHHHhhhhhhHH
Confidence 12222222 345667777786665443
No 197
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.10 E-value=2.2 Score=50.36 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=92.2
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (720)
.+..++..+..+.. .+|-.|+++|..+. .+|..... ..+-..+-.-+.++.. .||+
T Consensus 817 yLk~Il~~l~e~~i------------alRtkAlKclS~ive~Dp~vL~~---~dvq~~Vh~R~~Dssa--------sVRE 873 (1692)
T KOG1020|consen 817 YLKLILSVLGENAI------------ALRTKALKCLSMIVEADPSVLSR---PDVQEAVHGRLNDSSA--------SVRE 873 (1692)
T ss_pred HHHHHHHHhcCchH------------HHHHHHHHHHHHHHhcChHhhcC---HHHHHHHHHhhccchh--------HHHH
Confidence 55666777776555 89999999999999 55543211 1122233334444444 8999
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCH
Q 004992 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (720)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~ 263 (720)
.|+..++...-..++.-... ...+..-..++...||..++++++.+|...|+.-. +.+ +...++.-..++..
T Consensus 874 AaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~--~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 874 AALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IVD--MCAKMLRRVNDEEG 945 (1692)
T ss_pred HHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HHH--HHHHHHHHhccchh
Confidence 99999998776555443333 24566666688899999999999999975554421 111 23333444445555
Q ss_pred HHHHHHHHHHHHhhc
Q 004992 264 AIHYEAVGVIGNLVH 278 (720)
Q Consensus 264 ~v~~~a~~~L~nL~~ 278 (720)
.++..+..++.++..
T Consensus 946 ~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 946 NIKKLVRETFLKLWF 960 (1692)
T ss_pred HHHHHHHHHHHHHhc
Confidence 678888888877763
No 198
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.02 E-value=0.35 Score=48.60 Aligned_cols=197 Identities=20% Similarity=0.219 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHh--CCChHHHHHhhcCCCCcccccCCCcchHHH
Q 004992 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVE--GGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (720)
Q Consensus 55 ~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v 132 (720)
....+...++.+.+- ....|..++..+.++....-..+.+.. .-.+..+.+.++.+.. +-
T Consensus 41 ~e~~L~~~Id~l~eK------~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~------------~E 102 (309)
T PF05004_consen 41 LEDKLKEAIDLLTEK------SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS------------EE 102 (309)
T ss_pred HHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH------------HH
Confidence 334455555555443 345799999999998763222222221 2256667777776655 44
Q ss_pred HHHHHHHHHHhc-c-C-hhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHH-hcCC
Q 004992 133 EKGSAFALGLLA-V-K-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-MEGG 208 (720)
Q Consensus 133 ~~~a~~~L~~L~-~-~-~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~ 208 (720)
+..|+.+++-++ . + ......+. ....|.|...+.+..... .++..++.+|.-++.-.......+. ....
T Consensus 103 ~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~~~L~~~l~d~s~~~------~~R~~~~~aLai~~fv~~~d~~~~~~~~~~ 175 (309)
T PF05004_consen 103 QALAARALALLALTLGAGEDSEEIF-EELKPVLKRILTDSSASP------KARAACLEALAICTFVGGSDEEETEELMES 175 (309)
T ss_pred HHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHHHHHHhCCccch------HHHHHHHHHHHHHHHhhcCChhHHHHHHHH
Confidence 567777777777 2 1 22233333 346788888888875532 5556666677666541111101110 0012
Q ss_pred cHHHHHh--hc----------CCCHHHHHHHHHHHHHhccCChhc-HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004992 209 IPPLVEL--LE----------FTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN 275 (720)
Q Consensus 209 i~~L~~l--l~----------~~~~~v~~~a~~~L~~L~~~~~~~-~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~n 275 (720)
+..+... .+ .+++.+..+|+.+-+-|...-+.. .....+ ..+|.|..+|.+++.+||..|..+|+-
T Consensus 176 le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAl 254 (309)
T PF05004_consen 176 LESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIAL 254 (309)
T ss_pred HHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2211111 11 123568888877776666433432 223332 369999999999999999999998887
Q ss_pred hh
Q 004992 276 LV 277 (720)
Q Consensus 276 L~ 277 (720)
|.
T Consensus 255 l~ 256 (309)
T PF05004_consen 255 LY 256 (309)
T ss_pred HH
Confidence 75
No 199
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.94 E-value=1.6 Score=42.48 Aligned_cols=237 Identities=15% Similarity=0.119 Sum_probs=154.5
Q ss_pred HHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchH---HHHHH--cCChHHHHHhhccCChHHHHHHHHHHHH
Q 004992 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK---KEVLA--AGALQPVIGLLSSCCSESQREAALLLGQ 317 (720)
Q Consensus 243 ~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~---~~~~~--~~~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (720)
..+.++|.++.++..+..-+-+.+..++.+..|+-...-+.+ ..... ...+..++.--.. .+++...+...+..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 345578999999999999888888888888888864322221 11111 1233333333111 36666666666666
Q ss_pred HhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCC----HHHHHHHhcCCChhH
Q 004992 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGG----LVPLLKLLDSKNGSL 393 (720)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~----i~~l~~ll~~~~~~v 393 (720)
..+ .+.....+....-......+++.+..++..-|......+.. ++......+...+. .+.--.++.+.++-.
T Consensus 152 cir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt--~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvt 228 (342)
T KOG1566|consen 152 CIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLT--RHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVT 228 (342)
T ss_pred HHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHH--HhHHHHHHHHHhChhhhHHHHHHHHhcccceeh
Confidence 654 34555667777778888899999888999999999998887 22222333333332 444667889999999
Q ss_pred HHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHH
Q 004992 394 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 473 (720)
Q Consensus 394 ~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~ 473 (720)
+..+..+++.+-.+.++...+.. .+-+..-+..+..+|+++..++|..|-.
T Consensus 229 krqs~kllg~llldr~N~~~M~k-----------------------------Yiss~enLKlmM~llrdkskniQ~eAFh 279 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTK-----------------------------YISSPENLKLMMNLLRDKSKNIQLEAFH 279 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHH-----------------------------HhcCHHHHHHHHHHhhCccccchHHHHH
Confidence 99999999999877776444333 1112345667888999999999999999
Q ss_pred HHHhhcCCcccc----hhhhccCcHHHHHHhhc----CCCchhhhhHHH
Q 004992 474 ALAHLCSPDDQR----TIFIDGGGLELLLGLLG----STNPKQQLDGAV 514 (720)
Q Consensus 474 ~L~~l~~~~~~~----~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~ 514 (720)
...-+..++... .+++.. -+.|++++. +..++.|+..-.
T Consensus 280 vFKvfvAnpnK~q~V~~IL~~N--r~KLl~~l~~f~~d~~~DeqF~dEk 326 (342)
T KOG1566|consen 280 VFKVFVANPNKPQPVRDILVRN--RPKLLELLHDFHTDRTEDEQFLDEK 326 (342)
T ss_pred HHHHHhcCCCCCchHHHHHHhC--cHHHHHHHHHhCCCCCchhhhhhhH
Confidence 998887666522 223322 345555544 233555555433
No 200
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.92 E-value=1.5 Score=41.04 Aligned_cols=205 Identities=13% Similarity=0.116 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHcc-ChhhHHHHHh-CCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHc
Q 004992 79 AAKRATHVLAELAK-NEEVVNWIVE-GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN 156 (720)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 156 (720)
.++.|+.-|+.--. .++....+.. .|....|++=+-+......-.-..+..+.=...|+..|.-++.+|+.|..+...
T Consensus 40 ~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~A 119 (293)
T KOG3036|consen 40 TREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLRA 119 (293)
T ss_pred hHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHHc
Confidence 46666666666554 2444444443 344444443211110000000001111133456777788888999999999998
Q ss_pred CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCc-hhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004992 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (720)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (720)
.+--.+-.+|.....+. +..-+|..+++++..+.+.++ +.-..+...+++|.+++.+..+++.-+..|..++..+.
T Consensus 120 ~iPlylYpfL~Tt~~~r---~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 120 HIPLYLYPFLNTTSKSR---PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred cChhhhHHhhhccccCC---chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 87777777886654432 233788899999999997544 34455677899999999999999999999999998888
Q ss_pred cCChhcHHHHHhC--------CCHHH-HHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHH
Q 004992 236 FKNDENKNQIVEC--------NALPT-LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (720)
Q Consensus 236 ~~~~~~~~~i~~~--------g~l~~-L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~ 288 (720)
. ++.+-..+.+. ..+.. +..+.+.++..+.++++++..+|+ +++..+..+.
T Consensus 197 l-dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs-dnprar~aL~ 256 (293)
T KOG3036|consen 197 L-DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS-DNPRARAALR 256 (293)
T ss_pred h-ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 6 44443333221 12222 334556678899999999999995 4566555443
No 201
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.57 Score=53.53 Aligned_cols=222 Identities=13% Similarity=0.060 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHh--cCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hcHHHHHhCCCHHHHHH
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLIL 256 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~l~~L~~ 256 (720)
.++..+-.+|..++.. +........ ..+...|..-.++.+...+...+.+|..|....+ ++...+.. .|+-++-
T Consensus 669 ~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~EvIL 745 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPEVIL 745 (1176)
T ss_pred HHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHHHHH
Confidence 8889999999999875 322211110 1223344444455567778888888887776444 33333333 3554444
Q ss_pred hhcCCCHHHHHHHHHHHHHhhc--CCcc---hHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHh
Q 004992 257 MLRSEDSAIHYEAVGVIGNLVH--SSPN---IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 331 (720)
Q Consensus 257 ll~~~~~~v~~~a~~~L~nL~~--~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 331 (720)
.+++.+...|+.+..+|..+.. ..-+ ......-..++..|..-+...........+.++..+..........-.-
T Consensus 746 ~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l 825 (1176)
T KOG1248|consen 746 SLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETL 825 (1176)
T ss_pred hcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4588888889998888888862 1000 0001111123333333333322322222233444443322222222223
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 332 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
.+++..+..+|.+++++++..|++.+.-++. ..++....-.....++.+..+.++....++..+...+..|.+
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~--~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVY--KFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--cCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4566777777889999999999999999998 344444333334467888888888888999988888888865
No 202
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.89 E-value=1.7 Score=48.33 Aligned_cols=259 Identities=15% Similarity=0.130 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (720)
-++..|++++...+...-+ .. ...+++..|+.+....++ ++....+.+|+..+.-+++.. ...+..+.|
T Consensus 506 ~~ki~a~~~~~~~~~~~vl-~~-~~p~ild~L~qlas~~s~--------evl~llmE~Ls~vv~~dpef~-as~~skI~P 574 (1005)
T KOG2274|consen 506 PVKISAVRAFCGYCKVKVL-LS-LQPMILDGLLQLASKSSD--------EVLVLLMEALSSVVKLDPEFA-ASMESKICP 574 (1005)
T ss_pred chhHHHHHHHHhccCceec-cc-cchHHHHHHHHHcccccH--------HHHHHHHHHHHHHhccChhhh-hhhhcchhH
Confidence 5677777777776621111 11 113456666666666665 888889999999998676554 344556777
Q ss_pred HHHHhh--cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCCcchH
Q 004992 211 PLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIK 284 (720)
Q Consensus 211 ~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~----~~v~~~a~~~L~nL~~~~~~~~ 284 (720)
.++.+. .+++|.+...+-.++..++. ...+...+.. ..+|.++..+..+. ......++..|..+....+.--
T Consensus 575 ~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 575 LTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 776654 45678887777788888875 3444444433 37999999998765 5566667777776665544433
Q ss_pred HHHHHcCChHHHHHh-hccCChHHHHHHHHHHHHHhccCcchhhHHHhcCCh------HHHHHHhcC-CCHHHHHHHHHH
Q 004992 285 KEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV------RPLIEMLQS-PDVQLREMSAFA 356 (720)
Q Consensus 285 ~~~~~~~~l~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~------~~L~~ll~~-~~~~v~~~a~~~ 356 (720)
...+..-.+|.+.++ +.+++.++...+..+|..+.+.+.+....-...++. ..+-.+|.- .+......+...
T Consensus 653 ~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~l 732 (1005)
T KOG2274|consen 653 PNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPL 732 (1005)
T ss_pred cHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHH
Confidence 333444566666666 456677888888888888876543333222222222 223333322 111222233333
Q ss_pred HHHHhhhhcCcchhhhhhhc--CCHH-HHHHHhcCCChhHHHHHHHHHHhcccC
Q 004992 357 LGRLAQVITDMHNQAGIAHN--GGLV-PLLKLLDSKNGSLQHNAAFALYGLADN 407 (720)
Q Consensus 357 L~~l~~~~~~~~~~~~l~~~--~~i~-~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (720)
+..|..+.+ ..+... .++. .+.++..-....+.+....++..|...
T Consensus 733 V~tLit~a~-----~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 733 VLTLITHAS-----SELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred HHHHHHHHH-----HHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC
Confidence 333333221 111110 1222 244444556778888888888888643
No 203
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.87 E-value=0.13 Score=49.17 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhh
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll 258 (720)
.....|+.+|.-+|--++..+..+.....+..++.+|. ...+.++.+++.+|..+..+++.+...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 55677889999999889999999999999999999994 45689999999999999989999999999999999999999
Q ss_pred cCC--CHHHHHHHHHHHHHhhcC
Q 004992 259 RSE--DSAIHYEAVGVIGNLVHS 279 (720)
Q Consensus 259 ~~~--~~~v~~~a~~~L~nL~~~ 279 (720)
++. +.+++..++..|.-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 885 568888888888766543
No 204
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=0.51 Score=51.89 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=98.5
Q ss_pred HHHHhCCCHHHHHHhhcC--------CCHHHHHHHHHHHHHhhcCCcchHHHHHHc--------CChHHHHHhhccC---
Q 004992 243 NQIVECNALPTLILMLRS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--------GALQPVIGLLSSC--- 303 (720)
Q Consensus 243 ~~i~~~g~l~~L~~ll~~--------~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~--------~~l~~L~~ll~~~--- 303 (720)
+.+...+++..++.+..- +..+....|+.+|+-+.. -|..+..++.+ .++..++......
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 344455566666666542 223566777877777754 46666666542 2556666555432
Q ss_pred -ChHHHHHHHHHHHHHhccCcchhhHHHhc----CChHHHHHHh-cCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcC
Q 004992 304 -CSESQREAALLLGQFAATDSDCKVHIVQR----GAVRPLIEML-QSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNG 377 (720)
Q Consensus 304 -~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~ 377 (720)
+++++..|+.+|.|+....+.++...+.. .+-+.. .+ ........+..+.-.++... ..+
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l~~mw~~Vr------------~nd 739 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVLRQMWEAVR------------GND 739 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHHHHHHHHHh------------cCc
Confidence 68999999999999987766665433211 111111 11 11223344444444444444 467
Q ss_pred CHHHHHHHhcCCCh-----hHHHHHHHHHHhcccCCCchhHHHhh
Q 004992 378 GLVPLLKLLDSKNG-----SLQHNAAFALYGLADNEDNVADFIRV 417 (720)
Q Consensus 378 ~i~~l~~ll~~~~~-----~v~~~a~~~L~~l~~~~~~~~~l~~~ 417 (720)
+|..|+++++-.+| .+|..||.+|.-|++++..++.+...
T Consensus 740 GIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 740 GIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred cHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 89999999976543 58999999999999998877665543
No 205
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.76 E-value=0.67 Score=46.58 Aligned_cols=180 Identities=22% Similarity=0.190 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHH--hcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccC--ChhcHHHHHhCCCHHHHH
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVR--MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLI 255 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~i~~~g~l~~L~ 255 (720)
..|..++..+.++....... ..+. ....+..+.+.++.+..+-+..|+.++.-++.. .......+.+. +.|.|.
T Consensus 58 ~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~ 135 (309)
T PF05004_consen 58 STREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE-LKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHH
Confidence 78888888888877543322 2221 113456677777777766677787877777653 33455566654 788999
Q ss_pred HhhcCCC--HHHHHHHHHHHHHhhc---CCcchHHHHHHcCChHHHHH--hhcc----------CChHHHHHHHHHHHHH
Q 004992 256 LMLRSED--SAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIG--LLSS----------CCSESQREAALLLGQF 318 (720)
Q Consensus 256 ~ll~~~~--~~v~~~a~~~L~nL~~---~~~~~~~~~~~~~~l~~L~~--ll~~----------~~~~~~~~a~~~L~~l 318 (720)
..+.+.. ..+|..++.+|+-++. ..+......+ ..+..+.. ..+. +++.+...|+.+.+-|
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 9988764 4566666666666542 2222111111 12231111 1111 1245677777666666
Q ss_pred hccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhh
Q 004992 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (720)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (720)
...-+.....-.-...+|.|..+|.+.+..||.+|..+|.-+-+.
T Consensus 214 lt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 214 LTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 544343222222234689999999999999999999999988873
No 206
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.72 E-value=0.026 Score=50.86 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=70.4
Q ss_pred ceEEEEECCeEEehhHHHHhhcch--hHhhcccCCc---CCCCCCceecCCCCHHHHHHHHHHHhcCCcc-cChhhHHHH
Q 004992 553 SDVTFLVEGRRFYAHRICLLASSD--AFRAMFDGGY---REKDARDIEIPNIRWEVFELMMRFIYTGSVD-VTLDIAQDL 626 (720)
Q Consensus 553 ~Dv~~~~~~~~~~~h~~iL~~~s~--~f~~~~~~~~---~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~-~~~~~~~~l 626 (720)
+.|.+.++|+.|....--|..|-| ...+||.+.- ++.+.+-+-+ |-+|.-|+.++.|+..|+++ .+..++..+
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCceeecCCccHHHH
Confidence 457788888888877766666554 6678887532 2333344444 67899999999999999988 566789999
Q ss_pred HHHHhhhChHHHHHHHHH
Q 004992 627 LRAADQYLLEGLKRLCEY 644 (720)
Q Consensus 627 l~~A~~~~~~~l~~~c~~ 644 (720)
+..|++|++-+|++..+.
T Consensus 88 LeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHhhHHhhHhHHhHHhh
Confidence 999999999999998877
No 207
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.71 E-value=0.061 Score=57.63 Aligned_cols=189 Identities=14% Similarity=0.179 Sum_probs=118.6
Q ss_pred HhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcch
Q 004992 246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (720)
Q Consensus 246 ~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (720)
.+.+++|.++++++..+..+|.. .|.++-..-+...+.+++..++|.+..-+.+.++.+|+..+..+..++.. .
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k---L 400 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK---L 400 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh---h
Confidence 34567888888888888888844 44444333355556777788888888888888888888888888877642 2
Q ss_pred hhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 004992 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 326 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (720)
....+...++..+-.+-.+.+..+|....-+|+.++. ..... ....-.+..+.+.+.++-..-|..+.++++...
T Consensus 401 ~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~---~l~~~--~R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 401 SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP---HLAAS--VRKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred chhhhcHHHHHHHHhhCccccCcccccceeeeccccc---ccchh--hhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 1222333334444444445667778777777777766 21111 112222344566667776777777777777665
Q ss_pred cCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcC
Q 004992 406 DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 480 (720)
Q Consensus 406 ~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 480 (720)
...+. ..+...+++.+..+.-+++..+|..|-.++..+-.
T Consensus 476 ~~~~~-----------------------------------~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 476 EYFDQ-----------------------------------SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cccch-----------------------------------hhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 43322 12234466777777778888888888777766533
No 208
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.69 E-value=4.7 Score=45.09 Aligned_cols=217 Identities=14% Similarity=0.059 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh-cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhh
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll 258 (720)
.+...+.+.+...+.....+...+. .++...+..+ .+..+.++..|+++++..+. ....... ..+++..|+.+.
T Consensus 465 ~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~L~qla 539 (1005)
T KOG2274|consen 465 FLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDGLLQLA 539 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHHHHHHc
Confidence 5556888888877764333322211 1223333333 34557788888888887772 2211111 245777888888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc--cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChH
Q 004992 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (720)
Q Consensus 259 ~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 336 (720)
...+.++......+|+..+..+++.. ...++.+.|.++.+.. +.+|.+...+--++..++. ...+.. -.....+|
T Consensus 540 s~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g-~m~e~~iP 616 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYG-PMQERLIP 616 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhc-chHHHHHH
Confidence 88888999889999999998878763 3456667787777764 3456555555555555543 111111 12345789
Q ss_pred HHHHHhcCCC----HHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhccc
Q 004992 337 PLIEMLQSPD----VQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 337 ~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~ 406 (720)
.+++.|..+. +.....++..|..+.+. .+..-....-..+.|++.++. ++.+.....++..+|+.+..
T Consensus 617 slisil~~~~~~~~~~l~~~aidvLttvvr~--tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 617 SLISVLQLNADKAPAGLCAIAIDVLTTVLRN--TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHcCcccccCchhhHHHHHHHHHHHhc--CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 9999997655 67888899999988883 333333444455677777765 77788888888888888753
No 209
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.69 E-value=0.73 Score=46.36 Aligned_cols=156 Identities=19% Similarity=0.129 Sum_probs=104.2
Q ss_pred CHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCc-chhh
Q 004992 250 ALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKV 327 (720)
Q Consensus 250 ~l~~L~-~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~ 327 (720)
.+..|+ ..+++.++.+|+.++.+|+-.+..+..... ..++.+...++.++..++..|+.++..+..... ....
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 454444 677889999999999999999877664333 246778888877789999999999998764221 1111
Q ss_pred H-------HHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcC----CChhHHHH
Q 004992 328 H-------IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDS----KNGSLQHN 396 (720)
Q Consensus 328 ~-------~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~----~~~~v~~~ 396 (720)
. .....++..+.+.+.+.+++++..|+..++.|... ..... ....+..|+-+..+ .+..+++.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~---~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS---GRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1 12245678888888888999999999999999882 22111 12334444443322 35677777
Q ss_pred HHHHHHhcccCCCchhHHHh
Q 004992 397 AAFALYGLADNEDNVADFIR 416 (720)
Q Consensus 397 a~~~L~~l~~~~~~~~~l~~ 416 (720)
-...+...+......+..+.
T Consensus 176 L~~Ffp~y~~s~~~~Q~~l~ 195 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQERLA 195 (298)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 77777777665443334333
No 210
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.66 E-value=0.035 Score=45.86 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=59.5
Q ss_pred CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004992 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (720)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (720)
..+..|+.+|..+.++ .+...||.=|..++...|..+..+...|+-..+++++.++|++|+..|+.++..+.
T Consensus 43 ~llk~L~~lL~~s~d~-------~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDP-------TTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHH-------HHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCc-------ceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3678899999655543 78888999999999989998888878888899999999999999999999998775
No 211
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.65 E-value=0.44 Score=52.84 Aligned_cols=188 Identities=14% Similarity=0.116 Sum_probs=125.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhc-------------HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDEN-------------KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-------------~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL 276 (720)
..++.+|+.+ ++-..+..++.-+..+.+.. ++.+- ..++|.++..........+..-+.+|.+.
T Consensus 818 ~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshV 894 (1030)
T KOG1967|consen 818 EKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHV 894 (1030)
T ss_pred HHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence 4556666553 33334455555554433321 22222 34789999988866667777778888888
Q ss_pred hcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCC---HHHHHHH
Q 004992 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD---VQLREMS 353 (720)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~v~~~a 353 (720)
....|...-.---..++|.|++.|.-.+..+|..+..++.-+....+.....-+. -++|.++.+-.+++ ..+|+.|
T Consensus 895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~A 973 (1030)
T KOG1967|consen 895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDA 973 (1030)
T ss_pred HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHH
Confidence 7665542111112457888888888889999999999998877544444333322 36788887776655 6799999
Q ss_pred HHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHh
Q 004992 354 AFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 403 (720)
Q Consensus 354 ~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~ 403 (720)
+.+|..|.+ ..+...-......++..+.+.|.++.-.+|+.|..+=.+
T Consensus 974 LqcL~aL~~--~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 974 LQCLNALTR--RLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHhc--cCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 999999998 345555555566778889999999888899988876443
No 212
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.57 E-value=0.21 Score=51.84 Aligned_cols=173 Identities=13% Similarity=0.142 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHH
Q 004992 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (720)
Q Consensus 55 ~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~ 134 (720)
......++.+.+.+. +...+..|+..|..++.++.....++...++..|.+++++...-.. .++..
T Consensus 81 p~~~a~~i~e~l~~~------~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~--------~~~L~ 146 (713)
T KOG2999|consen 81 PSHYAKRIMEILTEG------NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMS--------SELLS 146 (713)
T ss_pred chHHHHHHHHHHhCC------CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchH--------HHHHH
Confidence 344666778888877 3335777999999999999999999999999999999998755211 26677
Q ss_pred HHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHH
Q 004992 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (720)
Q Consensus 135 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (720)
.++.++..+-...-..-......+|.....+.+....+. .+...|+..|-++...+...+..+.+.--+..|+.
T Consensus 147 ~~L~af~elmehgvvsW~~~~~~fV~~~a~~V~~~~~~a------~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~ 220 (713)
T KOG2999|consen 147 TSLRAFSELMEHGVVSWESVSNDFVVSMASYVNAKREDA------NTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIR 220 (713)
T ss_pred HHHHHHHHHHhhceeeeeecccHHHHHHHHHHhhhhhcc------cchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHH
Confidence 777777666522112122222334455555553322221 67788999999999877778888888888999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCChh-cHHHHHh
Q 004992 215 LLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVE 247 (720)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~i~~ 247 (720)
.+...+..+...|...+..+....++ .+..+.+
T Consensus 221 hlq~~n~~i~~~aial~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 221 HLQVSNQRIQTCAIALLNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 99999999988888877777654443 3444433
No 213
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.53 E-value=0.17 Score=55.86 Aligned_cols=150 Identities=16% Similarity=0.134 Sum_probs=111.2
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHh--CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchH
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~--~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~ 284 (720)
.++|.+++.........+..-+.+|.++....|. +.+.. ..++|.|+..|.-+|..+|..++.++.-+....+...
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 5778888888866667777777888887753332 44432 3578888899999999999999999988875555443
Q ss_pred HHHHHcCChHHHHHhhccCC---hHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 004992 285 KEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (720)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 359 (720)
.. .-..++|.++.+-.+.+ ..+|..|+..|..++..-|...-.-....++..|.+.|.++..-+|+.|+.+=.+
T Consensus 945 t~-~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 945 TE-HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred hH-HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 22 23457888888776655 5789999999999987566655556666788999999999888999998876443
No 214
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.51 E-value=0.3 Score=46.77 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHc
Q 004992 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (720)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~ 156 (720)
....|+++|.-++- +|..+..+.+...+..|+++|..... +.++..++.+|..+. ++|.+.+.+-..
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~-----------~~i~~a~L~tLv~iLld~p~N~r~FE~~ 175 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNP-----------PAIQSACLDTLVCILLDSPENQRDFEEL 175 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCC-----------chHHHHHHHHHHHHHHcChHHHHHHHHh
Confidence 56667788887777 79999999999999999999954332 289999999999988 999999999999
Q ss_pred CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhh
Q 004992 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (720)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~ 194 (720)
+|+..++.++++...+. +++-.++..|.-+..
T Consensus 176 ~Gl~~v~~llk~~~~~~------~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 176 NGLSTVCSLLKSKSTDR------ELRLKCIEFLYFYLM 207 (257)
T ss_pred CCHHHHHHHHccccccH------HHhHHHHHHHHHHHc
Confidence 99999999999876643 888888888877765
No 215
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.45 E-value=2.8 Score=47.54 Aligned_cols=185 Identities=12% Similarity=0.138 Sum_probs=114.9
Q ss_pred HHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc----CCC----HHHHH
Q 004992 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FTD----TKVQR 225 (720)
Q Consensus 154 ~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~v~~ 225 (720)
.+.|++..++.++....+....+ ++....+..|...|. .+.+|+.+...++++.|+..+. .+. ..+.+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~---~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGR---ELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcH---HHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 45789999999998765533333 677777777777777 6889999999999999988773 333 67777
Q ss_pred HHHHHHHHhccCChhcHHHH------HhCC--------CHHHHHHhhcCC----CHHHHHHHHHHHHHhhcCCcchHHHH
Q 004992 226 AAAGALRTLAFKNDENKNQI------VECN--------ALPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPNIKKEV 287 (720)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~i------~~~g--------~l~~L~~ll~~~----~~~v~~~a~~~L~nL~~~~~~~~~~~ 287 (720)
..+.++..+.. +.+...+ .... -+..|++.+.++ ++.+....+++|..|+.++++.-+.+
T Consensus 190 ~LL~IiE~ll~--ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L 267 (802)
T PF13764_consen 190 QLLEIIESLLS--EANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL 267 (802)
T ss_pred HHHHHHHHHHH--HHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence 77777777664 2221111 0111 266677766653 67899999999999998887765554
Q ss_pred HHcCChHHHHHhhccC---ChHHHHHHHHHHHHHhcc---C---cchhhHHHhcCChHHHHHHhcCCCH
Q 004992 288 LAAGALQPVIGLLSSC---CSESQREAALLLGQFAAT---D---SDCKVHIVQRGAVRPLIEMLQSPDV 347 (720)
Q Consensus 288 ~~~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l~~~---~---~~~~~~~~~~~~~~~L~~ll~~~~~ 347 (720)
++. +...+++=.-+ ..+- ..-+..+..++.+ + ...+..+++.|++...+..|...-|
T Consensus 268 v~~--F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 268 VEH--FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP 333 (802)
T ss_pred HHH--HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 432 12222221111 1111 1123333333322 1 2456678888998888888865444
No 216
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.45 E-value=0.015 Score=35.42 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHhhcC
Q 004992 452 VLNHLLYLMRVAEKGVQRRVALALAHLCS 480 (720)
Q Consensus 452 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 480 (720)
++|.+++++++++++||..|+.+|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999998864
No 217
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.44 E-value=0.055 Score=54.23 Aligned_cols=86 Identities=26% Similarity=0.317 Sum_probs=69.6
Q ss_pred eEEEEECCeEEehhHHHHhhcc--hhHhhcccCCcCCCCCCc--eecCCCCHHHHHHHHHHHhcCCcccChhhHHHHHH-
Q 004992 554 DVTFLVEGRRFYAHRICLLASS--DAFRAMFDGGYREKDARD--IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR- 628 (720)
Q Consensus 554 Dv~~~~~~~~~~~h~~iL~~~s--~~f~~~~~~~~~e~~~~~--i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~- 628 (720)
-|.+.++|+.|...+.-|+--. .||-+++++.|.-.+.+. |-+ |=+|+.|..+|.|+-||.++++......++.
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhd 90 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHD 90 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhh
Confidence 3678899999999999987555 599999988776544443 554 5689999999999999999997666665555
Q ss_pred HHhhhChHHHHH
Q 004992 629 AADQYLLEGLKR 640 (720)
Q Consensus 629 ~A~~~~~~~l~~ 640 (720)
=|.+|++..|..
T Consensus 91 EA~fYGl~~llr 102 (465)
T KOG2714|consen 91 EAMFYGLTPLLR 102 (465)
T ss_pred hhhhcCcHHHHH
Confidence 999999999876
No 218
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.43 E-value=0.063 Score=39.09 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=43.7
Q ss_pred EEEEE-CCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhc
Q 004992 555 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 613 (720)
Q Consensus 555 v~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt 613 (720)
+.+.. +|..|.+.+.+.. .|..++.|+.+...+.. .|.+++++..+++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 44554 5689999999977 89999999975332222 799999999999999999974
No 219
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.41 E-value=0.024 Score=34.54 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 494 LELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 494 ~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
+|.+.++++|++++||..|+.+|..++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999864
No 220
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.41 E-value=0.33 Score=52.35 Aligned_cols=230 Identities=15% Similarity=0.116 Sum_probs=153.8
Q ss_pred HHHHHhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHh
Q 004992 242 KNQIVECNALPTLILMLRSED--SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (720)
Q Consensus 242 ~~~i~~~g~l~~L~~ll~~~~--~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (720)
-+.++...++|.|+..+.-.+ .++....+..-.-+. . ++ ...+++|.|++++...+..+|..-+.-+.+..
T Consensus 286 pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld-~-~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i 358 (690)
T KOG1243|consen 286 PEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLD-E-EE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI 358 (690)
T ss_pred hHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhcc-c-cc-----cccchhhhHHHHhcCcchHHHHHHHHhHHHHh
Confidence 344555667777777765544 233333332222221 1 11 56779999999999998888877777666665
Q ss_pred ccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHH
Q 004992 320 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 399 (720)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~ 399 (720)
. ..-...++..++|.+...+.+.++.+|+..+..+..++...+ ........+..+.++..+.+..+|.+..-
T Consensus 359 ~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-----~~~Ln~Ellr~~ar~q~d~~~~irtntti 430 (690)
T KOG1243|consen 359 D---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-----KRNLNGELLRYLARLQPDEHGGIRTNTTI 430 (690)
T ss_pred h---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc-----hhhhcHHHHHHHHhhCccccCccccccee
Confidence 3 333456677789999999999999999999999999887332 11233334566666667778889999888
Q ss_pred HHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhc
Q 004992 400 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 479 (720)
Q Consensus 400 ~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 479 (720)
+|..++...... .+.++ .......-++++-+.-|..+..++....
T Consensus 431 clgki~~~l~~~---~R~~v--------------------------------L~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 431 CLGKIAPHLAAS---VRKRV--------------------------------LASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred eecccccccchh---hhccc--------------------------------cchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 888887643221 12221 1223444566776777888888887776
Q ss_pred CCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 480 SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 480 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
...+...+ ...++|.+.-+.-++++.++..|-.++.......
T Consensus 476 ~~~~~~~v--a~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 476 EYFDQSEV--ANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred cccchhhh--hhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 66654443 5567888888888888888888888777655443
No 221
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=2.3 Score=44.14 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=91.6
Q ss_pred hCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhH
Q 004992 102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (720)
Q Consensus 102 ~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~ 180 (720)
+.|.+..++..+....++.+. .+|..|+..|+|.+ ..|+-..... .-.+..++.-|.++.+. +
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a--------~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~-------~ 315 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSA--------KSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNE-------E 315 (533)
T ss_pred ccccHHHHHHHHHHhccCchh--------HHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCcc-------H
Confidence 456777666665443332222 89999999999999 4344322222 12345555555555443 9
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCCc---HHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhcHHHHHh--CCCHHHH
Q 004992 181 VIRRAADAITNLAHENSSIKTRVRMEGGI---PPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVE--CNALPTL 254 (720)
Q Consensus 181 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i---~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~--~g~l~~L 254 (720)
|...++.+|..+....... -...+.+ -.+..+..+.++++|.++...+..|+.- ....+..+.+ .+....|
T Consensus 316 V~leam~~Lt~v~~~~~~~---~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~l 392 (533)
T KOG2032|consen 316 VQLEAMKCLTMVLEKASND---DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPL 392 (533)
T ss_pred HHHHHHHHHHHHHHhhhhc---chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccc
Confidence 9999999998887532221 1222333 3455677888999999888877777641 1222333332 2234455
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhh
Q 004992 255 ILMLRSEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~nL~ 277 (720)
+-.++++++.+.. |++.....+
T Consensus 393 llhl~d~~p~va~-ACr~~~~~c 414 (533)
T KOG2032|consen 393 LLHLQDPNPYVAR-ACRSELRTC 414 (533)
T ss_pred eeeeCCCChHHHH-HHHHHHHhc
Confidence 5566778887654 344544443
No 222
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.34 Score=53.21 Aligned_cols=172 Identities=13% Similarity=0.076 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~ 259 (720)
.++..++..|..+.... .....+...+++...+..+++.++-+-.+|...+..||.- ....++|.+...-.
T Consensus 742 pik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~il~dL~e~Y~ 812 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPEDILPDLSEEYL 812 (982)
T ss_pred cchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchhhHHHHHHHHH
Confidence 78889999999998743 4445566778999999999999999999999988888852 33457777777332
Q ss_pred CC----CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCCh
Q 004992 260 SE----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (720)
Q Consensus 260 ~~----~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 335 (720)
+. ..+.+.....++.++...-.+....-.+ .++..++....+++...|..++..+++++.-.......++ ..++
T Consensus 813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ev~ 890 (982)
T KOG4653|consen 813 SEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-HEVL 890 (982)
T ss_pred hcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-HHHH
Confidence 21 1345555566777776433333222222 4566777777777777899999999999853221111121 2244
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhh
Q 004992 336 RPLIEMLQ-SPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 336 ~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 362 (720)
..++.+.+ ++++.+|++|+..+..+..
T Consensus 891 ~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 891 QLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 55555554 4778999999999999887
No 223
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.27 E-value=0.39 Score=48.29 Aligned_cols=192 Identities=18% Similarity=0.101 Sum_probs=121.0
Q ss_pred CChHHHH-HhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcch
Q 004992 291 GALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHN 369 (720)
Q Consensus 291 ~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (720)
+++..|+ ..+++.++.+|+.+..+|+-.+--+.+.... .++.+...+..++..++..|+.++..+....|....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3444444 6677888999999999999888655433222 367788888778999999999999999884332211
Q ss_pred hhh------hhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHH
Q 004992 370 QAG------IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR 443 (720)
Q Consensus 370 ~~~------l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~ 443 (720)
... ......+..+.+.+.+.+++++..++..++.|.-......
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~------------------------------- 149 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD------------------------------- 149 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-------------------------------
Confidence 111 1123456677788888899999999999999854322111
Q ss_pred HHHhhhhhhHHHHHHHHHhc----chhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCc----hhhhhHHHH
Q 004992 444 LEEKIHGRVLNHLLYLMRVA----EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP----KQQLDGAVA 515 (720)
Q Consensus 444 l~~~~~~~~~~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~----~v~~~a~~a 515 (720)
...++..|+-+.-++ ++.+|..-...+..++......+.......+|.+..+.+.+.. .-......+
T Consensus 150 -----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v 224 (298)
T PF12719_consen 150 -----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQV 224 (298)
T ss_pred -----HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHH
Confidence 012333444443332 4456666666666667666544455667778888887776432 223334455
Q ss_pred HHHHHhhc
Q 004992 516 LFKLANKA 523 (720)
Q Consensus 516 L~~L~~~~ 523 (720)
...+....
T Consensus 225 ~~~lv~lt 232 (298)
T PF12719_consen 225 ASFLVDLT 232 (298)
T ss_pred HHHHHHHC
Confidence 55555443
No 224
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.17 E-value=5.8 Score=42.85 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~ 259 (720)
..++.|+..+..+...-|...+. .+..++.++.+.+..||..|...|..+|.++++.... +..+|+.+|.
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~ 106 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHh
Confidence 88899999999999878877654 4689999999999999999999999999866665444 4668999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc---cCChHHHHHHHHHHH
Q 004992 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLG 316 (720)
Q Consensus 260 ~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~a~~~L~ 316 (720)
++++.....+-.+|..|...++. +.+..+..-+. .++..+|+.++..|.
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 98887666666677666544332 22333444333 456778888887775
No 225
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.14 E-value=0.59 Score=50.31 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~ 259 (720)
.+.+.++..+..+-..+.+.. ++ .|.+..+++...+++..||..+|..|+.+.. +......-+-.++...+..-+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~D--lV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED--LV-AGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh--HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHh
Confidence 455555555555543232221 22 3566677777788899999999999999995 3333444444457788888888
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc-cCChHHHHHHHHHHH
Q 004992 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLG 316 (720)
Q Consensus 260 ~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~ 316 (720)
+..+.||.+|+.+|+.+-.+..+- +..+...+..+++ ++++++|+.++..|.
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 999999999999999995322111 1235667777776 457899988766544
No 226
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=0.32 Score=55.40 Aligned_cols=163 Identities=19% Similarity=0.204 Sum_probs=123.2
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (720)
..|.++.+++.+.. +.+|+++.+|.-+|+.+. -+.++... .+|.|+..+..+..+ -++.
T Consensus 920 f~piv~e~c~n~~~--------~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p-------~IRs 979 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL--------FSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSP-------RIRS 979 (1251)
T ss_pred HHHHHHHHhcCCCc--------CCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCc-------eeee
Confidence 56677777766544 235699999999999988 45454333 479999999866554 8889
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCH
Q 004992 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (720)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~ 263 (720)
+++-.++.++..-+..- ...-+.|..-|.++++.+|..|..+|.+|.. ..++.-.|.++.+...+.+++.
T Consensus 980 N~VvalgDlav~fpnli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLIL-----ndmiKVKGql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 980 NLVVALGDLAVRFPNLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLIL-----NDMIKVKGQLSEMALCLEDPNA 1049 (1251)
T ss_pred cchheccchhhhccccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHH-----hhhhHhcccHHHHHHHhcCCcH
Confidence 99999998887555432 2455789999999999999999999999986 2344457899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC
Q 004992 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (720)
Q Consensus 264 ~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~ 303 (720)
+++..|=.....|+..... -.+++|-++.-|.++
T Consensus 1050 ~IsdlAk~FF~Els~k~n~------iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1050 EISDLAKSFFKELSSKGNT------IYNLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHHHHHHhhhcccc------hhhhchHHHHhhccC
Confidence 9998888888888644321 135677777777665
No 227
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=94.78 E-value=1.8 Score=43.52 Aligned_cols=250 Identities=15% Similarity=0.122 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC----C-HHHHHHHHHHHHHhhcCCcchH-HHHHHcCCh
Q 004992 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE----D-SAIHYEAVGVIGNLVHSSPNIK-KEVLAAGAL 293 (720)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~----~-~~v~~~a~~~L~nL~~~~~~~~-~~~~~~~~l 293 (720)
+..+...++.+|+|+...++..+....+......+++.+... . .++...-++.|--++......+ +.+.+.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 467888999999999998888888888877777777665431 1 1333333444444443334444 445578899
Q ss_pred HHHHHhhccC---Ch------------HHHHHHHHHHHHHhccCcchhh--HHHhc----CChHHHHHHhc--CCCHHHH
Q 004992 294 QPVIGLLSSC---CS------------ESQREAALLLGQFAATDSDCKV--HIVQR----GAVRPLIEMLQ--SPDVQLR 350 (720)
Q Consensus 294 ~~L~~ll~~~---~~------------~~~~~a~~~L~~l~~~~~~~~~--~~~~~----~~~~~L~~ll~--~~~~~v~ 350 (720)
+.+.+++.+. ++ ....+++.++.|++........ .-... ++...++..+. +...++.
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elh 269 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELH 269 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHh
Confidence 9999999753 11 2234456667777643221111 11111 11222222221 2233333
Q ss_pred HHHHHHHHHHhhh-------hcCcchhh-hh--hhcCCHHHHHHHhcCC---------ChhHHHHHHHHHHhcccCCCch
Q 004992 351 EMSAFALGRLAQV-------ITDMHNQA-GI--AHNGGLVPLLKLLDSK---------NGSLQHNAAFALYGLADNEDNV 411 (720)
Q Consensus 351 ~~a~~~L~~l~~~-------~~~~~~~~-~l--~~~~~i~~l~~ll~~~---------~~~v~~~a~~~L~~l~~~~~~~ 411 (720)
..+..-|.|.-.. ....++.. .+ ...-.++.+..+|... ..+...-.+.+|..+++.....
T Consensus 270 shav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~ 349 (532)
T KOG4464|consen 270 SHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVM 349 (532)
T ss_pred hccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHH
Confidence 3333333332210 00111111 11 1222355555555321 2234445667788888888888
Q ss_pred hHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccc
Q 004992 412 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR 485 (720)
Q Consensus 412 ~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 485 (720)
+.+....++|+|.+....+. +...+-.+++.++..++..++..|+..|.-||...-++
T Consensus 350 Rkylr~qVLPPLrDV~~RPE----------------vg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKesV~r 407 (532)
T KOG4464|consen 350 RKYLRQQVLPPLRDVSQRPE----------------VGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKESVNR 407 (532)
T ss_pred HHHHHHhcCCchhhhhcCcc----------------hhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcchhh
Confidence 88888888888765222111 12234456777888888888888888888877665444
No 228
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.74 E-value=1.7 Score=47.29 Aligned_cols=231 Identities=14% Similarity=0.079 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (720)
.-+..-...|.++. |.+-..+....++|.++..+.+.. ..-..+-++..++...+. .......++
T Consensus 288 ~qKs~Flk~Ls~~i--p~fp~rv~~~kiLP~L~~el~n~~----------~vp~~LP~v~~i~~~~s~---~~~~~~~~p 352 (700)
T KOG2137|consen 288 SQKSSFLKGLSKLI--PTFPARVLFQKILPTLVAELVNTK----------MVPIVLPLVLLIAEGLSQ---NEFGPKMLP 352 (700)
T ss_pred HHHHHHHHHHHHhh--ccCCHHHHHHhhhhHHHHHhcccc----------ccccccchhhhhhhccch---hhhhhhhhH
Confidence 45556666677777 555556667788899988885432 222233344444443322 123345667
Q ss_pred HHHHhhcCCC-HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHH
Q 004992 211 PLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (720)
Q Consensus 211 ~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~ 289 (720)
.|...++..+ ..+..-.+.-+--|. .....+.+.+ .++|.|..-+++.+..++..++..+...+..-+ -..+.
T Consensus 353 ~l~pi~~~~~~~~~~l~i~e~mdlL~--~Kt~~e~~~~-~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk 426 (700)
T KOG2137|consen 353 ALKPIYSASDPKQALLFILENMDLLK--EKTPPEEVKE-KILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVK 426 (700)
T ss_pred HHHHHhccCCcccchhhHHhhHHHHH--hhCChHHHHH-HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHH
Confidence 7777776422 222221111111122 2223334443 488999999999999999999999999975434 34556
Q ss_pred cCChHHHHHhh-ccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcc
Q 004992 290 AGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMH 368 (720)
Q Consensus 290 ~~~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (720)
.-++|.+..+. ...+..++..++.++..+. +......-...+..+....+..++.+....+.+..++.. ...
T Consensus 427 ~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~---~~~ 499 (700)
T KOG2137|consen 427 QAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALAL---IIY 499 (700)
T ss_pred HHHHHHhhcchhcccchHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh---hcc
Confidence 66888888874 3456888999999998887 222222222334555566677899999999999988887 333
Q ss_pred hhhhhhhcCCHHHHHHHhcCC
Q 004992 369 NQAGIAHNGGLVPLLKLLDSK 389 (720)
Q Consensus 369 ~~~~l~~~~~i~~l~~ll~~~ 389 (720)
.+..+....++|.++-+...+
T Consensus 500 ~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 500 SGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred cceeeehhhhhhhhhhhhhcc
Confidence 334555566777776666444
No 229
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.72 E-value=1.8 Score=42.11 Aligned_cols=206 Identities=13% Similarity=0.127 Sum_probs=141.0
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhh----HHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 004992 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV----HIV-QRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (720)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~----~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 359 (720)
+.+.++|.+..++..+...+.+.+..++.+..|+-...-..+. .+. +...+..++.--.+ .+++.-.+...|..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 5677889999999999999999999999988888643222221 111 12333333333111 46666666677776
Q ss_pred HhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc-CCCchhHHHhhcccccccchhhhhhhhHHHHH
Q 004992 360 LAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVA 438 (720)
Q Consensus 360 l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~ 438 (720)
... .+.....+..+.-.......+..++-.+...|..+...+.. +......+...+
T Consensus 152 cir---he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n-------------------- 208 (342)
T KOG1566|consen 152 CIR---HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRN-------------------- 208 (342)
T ss_pred HHh---hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhC--------------------
Confidence 666 66666777778888888888888888888888888777743 322222222211
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhh----ccCcHHHHHHhhcCCCchhhhhHHH
Q 004992 439 KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI----DGGGLELLLGLLGSTNPKQQLDGAV 514 (720)
Q Consensus 439 ~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~----~~~~~~~L~~ll~~~~~~v~~~a~~ 514 (720)
...-+.+..-.++++++.-+++++..+|+.+--+..+..+|. ....+..+..+++++...+|..|-.
T Consensus 209 ---------~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFh 279 (342)
T KOG1566|consen 209 ---------YDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFH 279 (342)
T ss_pred ---------hhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHH
Confidence 111123336678899999999999999999977766554432 3356788889999999999999988
Q ss_pred HHHHHHhhc
Q 004992 515 ALFKLANKA 523 (720)
Q Consensus 515 aL~~L~~~~ 523 (720)
...-...++
T Consensus 280 vFKvfvAnp 288 (342)
T KOG1566|consen 280 VFKVFVANP 288 (342)
T ss_pred HHHHHhcCC
Confidence 877766554
No 230
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.58 E-value=7.5 Score=41.32 Aligned_cols=102 Identities=21% Similarity=0.171 Sum_probs=74.1
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHH
Q 004992 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (720)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~ 285 (720)
.|.+..+++-+.+++..||..++.+|+.++. .-...+...-.|.+..|.+-+-+..+.||..|+.+|+.+-.....-..
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 4677778888889999999999999999985 334444555567888888888899999999999999999643222211
Q ss_pred HHHHcCChHHHHHhhc-cCChHHHHHHHH
Q 004992 286 EVLAAGALQPVIGLLS-SCCSESQREAAL 313 (720)
Q Consensus 286 ~~~~~~~l~~L~~ll~-~~~~~~~~~a~~ 313 (720)
.....++.+++ +++.++|+.|+.
T Consensus 169 -----~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 -----RIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred -----HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 12335666665 456788877654
No 231
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.9 Score=50.11 Aligned_cols=212 Identities=17% Similarity=0.150 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (720)
.+|-.++..|.++....+....+...+++...+..|++.++ =+-.+|+..+..||... ...++|
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds--------yvyLnaI~gv~~Lcevy--------~e~il~ 805 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS--------YVYLNAIRGVVSLCEVY--------PEDILP 805 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc--------eeeHHHHHHHHHHHHhc--------chhhHH
Confidence 57888999999999544666677788999999999998877 67788999888888742 345667
Q ss_pred HHHHh-hcCCC---HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 004992 211 PLVEL-LEFTD---TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (720)
Q Consensus 211 ~L~~l-l~~~~---~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~ 286 (720)
.+.+. .+..+ ++.+..+-.++.++...-.+....... -++..++...++++...|..++..+++++.........
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 77663 32221 344444556666666411111111111 24666777777777788999999999998543322222
Q ss_pred HHHcCChHHHHHhhc-cCChHHHHHHHHHHHHHhccCcchhhHHH---hcCChHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 004992 287 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIV---QRGAVRPLIEMLQS-PDVQLREMSAFALGRL 360 (720)
Q Consensus 287 ~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l 360 (720)
.. ..++..++.+.. +++.-+|++|+-.+..+-.+.......+. ..+....+....+. ++..++..+..++-.+
T Consensus 885 ~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 885 FF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 11 123444555554 45688899999998888654332222221 12333444444444 3445566655555443
No 232
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.50 E-value=2.2 Score=43.96 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=92.3
Q ss_pred CcHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHH-HHHHhhcCCcchHH
Q 004992 208 GIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG-VIGNLVHSSPNIKK 285 (720)
Q Consensus 208 ~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~-~L~nL~~~~~~~~~ 285 (720)
++..+++.|.+ .+...+..|+++|..++...+..-..-.+ -++..++..-.+.++++...|.. ++.-++...|..+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~- 407 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC- 407 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-
Confidence 45667777877 78889999999999999633322111111 13555555556666655444443 3444455555543
Q ss_pred HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhh
Q 004992 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (720)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (720)
+..+..++...+......++..+..++..-+.--...+-..+.|.+++.-.+.+..+|+.|+.+|..+....
T Consensus 408 -------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 408 -------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred -------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 233444444455666666666677776422211112223568899999999999999999999999888733
No 233
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.46 E-value=0.54 Score=53.63 Aligned_cols=140 Identities=17% Similarity=0.193 Sum_probs=109.2
Q ss_pred CHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc-cCChHHHHHHHHHHHHHhccCcc
Q 004992 250 ALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSD 324 (720)
Q Consensus 250 ~l~~L~~ll~~----~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~ 324 (720)
+.|.++..++. .+|+++..|.-+|+.+..-+...+.. -++.|+..+. ++++.+|.++.-+++-++..-+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 57777777754 57899999999999997665555443 5788999998 67899999999999988754333
Q ss_pred hhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhc
Q 004992 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 404 (720)
Q Consensus 325 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l 404 (720)
.... .-+.|...|.+.++.+|+.|+-+|.+|.. . ..+.-.|.+..+..++.++++.++.-|-.....|
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLIL---n----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLIL---N----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHH---h----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 3322 35778888999999999999999999998 2 2233357899999999999999998888666666
Q ss_pred cc
Q 004992 405 AD 406 (720)
Q Consensus 405 ~~ 406 (720)
+.
T Consensus 1063 s~ 1064 (1251)
T KOG0414|consen 1063 SS 1064 (1251)
T ss_pred hh
Confidence 54
No 234
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.38 E-value=0.2 Score=44.64 Aligned_cols=146 Identities=21% Similarity=0.282 Sum_probs=96.0
Q ss_pred CcHHHHHhhc--CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHH
Q 004992 208 GIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (720)
Q Consensus 208 ~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~ 285 (720)
.+..++..|. ...+++|..+.-++..+- +..++...+. +-+.+-.++...+.+-...++.++..+-...++.+.
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3444554443 355778888888888774 3344444332 333444455554445667788888888877787777
Q ss_pred HHH-HcCChHHHHHhhc--cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHH-HHHHHHHHHHH
Q 004992 286 EVL-AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQ-LREMSAFALGR 359 (720)
Q Consensus 286 ~~~-~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~-v~~~a~~~L~~ 359 (720)
.+. ..|+++.++.++. ..+..++..++.+|..-|. +..++ .++...++++|-+.++. .+.. ++..|+-.|+.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 666 5678889999998 6677888888888877653 44444 44455578999999964 5555 78887777765
No 235
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.33 E-value=0.26 Score=43.93 Aligned_cols=147 Identities=19% Similarity=0.186 Sum_probs=99.1
Q ss_pred CHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhh
Q 004992 250 ALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (720)
Q Consensus 250 ~l~~L~~ll~--~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (720)
.+..++..+. ...+++|..+.-++..+- +.. +.-...-+-+.+-.++.....+-...+..++..+-.+.++...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3445555554 356788988888888883 222 2222333445555556555555777788888888776676665
Q ss_pred HHH-hcCChHHHHHHhc--CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh-cCCChh-HHHHHHHHHH
Q 004992 328 HIV-QRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL-DSKNGS-LQHNAAFALY 402 (720)
Q Consensus 328 ~~~-~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~-v~~~a~~~L~ 402 (720)
.++ ..|+++.++.++. ..+..++..++.+|..-|. +...|. .....+++.|.+.. ++++.. ++..|+-+|.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~---d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI---DKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT---SHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc---cHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 544 6789999999998 6888899999998887765 444444 44556788888888 455666 8888887776
Q ss_pred hc
Q 004992 403 GL 404 (720)
Q Consensus 403 ~l 404 (720)
.+
T Consensus 156 Kl 157 (157)
T PF11701_consen 156 KL 157 (157)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 236
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.35 Score=50.48 Aligned_cols=125 Identities=18% Similarity=0.135 Sum_probs=78.6
Q ss_pred CChHHHHHH-hcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhcccCCCc
Q 004992 333 GAVRPLIEM-LQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDN 410 (720)
Q Consensus 333 ~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~ 410 (720)
|++..++.. ..+.+.++|++|+-+|+-+|. . +...+...+++| .+.|+.||...+.+|.-.|.....
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~---~--------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCC---D--------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEe---c--------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 455555555 466777888888888877776 1 223455556666 456777777777777766654332
Q ss_pred hhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhc
Q 004992 411 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 490 (720)
Q Consensus 411 ~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 490 (720)
+..+..|-.++.+.+.-||..|+.+++.+....+.+-...-
T Consensus 620 ---------------------------------------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v 660 (926)
T COG5116 620 ---------------------------------------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV 660 (926)
T ss_pred ---------------------------------------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH
Confidence 11334455677888889999999988887543322211123
Q ss_pred cCcHHHHHHhhcCCCch
Q 004992 491 GGGLELLLGLLGSTNPK 507 (720)
Q Consensus 491 ~~~~~~L~~ll~~~~~~ 507 (720)
.+++..+.+++.+++++
T Consensus 661 ~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 661 KRIIKKFNRVIVDKHES 677 (926)
T ss_pred HHHHHHHHHHHhhhhHh
Confidence 35567777777776655
No 237
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=11 Score=41.82 Aligned_cols=375 Identities=13% Similarity=0.074 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCC-----ccchhhhHHHHHHHHHHHHhhhcCchhhHHHH
Q 004992 132 VEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDS-----NCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (720)
Q Consensus 132 v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~-----~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 204 (720)
+....++....|. +-|++-+.-+ ...++.+.++|..+.+. .......+++...|..+.-.+...++.-..+.
T Consensus 208 vlll~~klfysLn~QDiPEFFEdnm-~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl 286 (960)
T KOG1992|consen 208 VLLLICKLFYSLNFQDIPEFFEDNM-KTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFL 286 (960)
T ss_pred HHHHHHHHHHhhhcccchHHHHhhH-HHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhH
Confidence 4444556666666 4455433322 23678888888744332 12233446666666666666654443322111
Q ss_pred hcCCcHHHHHhhcCCC-----HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 004992 205 MEGGIPPLVELLEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (720)
Q Consensus 205 ~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~ 279 (720)
..++...-.+|.+.. ..+...|+..|.+.+. .+.....+...+++..+.... ++.|+...
T Consensus 287 -~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~-r~~y~~~F~~~~vl~~i~e~V-------------vlpN~~lR 351 (960)
T KOG1992|consen 287 -PDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSR-RPHYAELFEGENVLAQICEKV-------------VLPNLILR 351 (960)
T ss_pred -HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHh-hhhhHhhhcchHHHHHHHHhh-------------cccccccc
Confidence 123333444554322 4556667777777774 344444444444444444433 33444322
Q ss_pred CcchHHHHHHcCChHHHHHhhccCChHHH-HHHHHHHHHHhccCcchhhHHHhcCChHHHHH-HhcC--CCHHHHHHHHH
Q 004992 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQ-REAALLLGQFAATDSDCKVHIVQRGAVRPLIE-MLQS--PDVQLREMSAF 355 (720)
Q Consensus 280 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-ll~~--~~~~v~~~a~~ 355 (720)
.+ -.++.+.+-+..+-.-++..+.+.| +.|+..+..|+...+.....++... +..+++ ..++ .++.-+..+..
T Consensus 352 ~e--DeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~-v~~~l~~y~~nPS~nWk~kd~aiy 428 (960)
T KOG1992|consen 352 EE--DEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE-VQRLLDQYSKNPSGNWKKKDRAIY 428 (960)
T ss_pred hh--hHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHhccCCCccccccchhhh
Confidence 12 2556677778888888887776654 4556677777754433333333222 222222 2222 23333444444
Q ss_pred HHHHHhhhhcCcc-----------------------------h----------------hhhhhh---cCCHHHHHHHhc
Q 004992 356 ALGRLAQVITDMH-----------------------------N----------------QAGIAH---NGGLVPLLKLLD 387 (720)
Q Consensus 356 ~L~~l~~~~~~~~-----------------------------~----------------~~~l~~---~~~i~~l~~ll~ 387 (720)
.+..++..++... + |..+.. -..++.+++.+.
T Consensus 429 L~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~ 508 (960)
T KOG1992|consen 429 LVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLE 508 (960)
T ss_pred hhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhcc
Confidence 4444443211000 0 000000 012556666777
Q ss_pred CCChhHHHHHHHHHHhcccCCCc-hhHHHhhccccc----ccchhh---------hhhhhHHHHHHHHHHHHHhh---hh
Q 004992 388 SKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQK----LQDGEF---------IVQATKDCVAKTLKRLEEKI---HG 450 (720)
Q Consensus 388 ~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~v~~----L~~~~~---------~~~~~~~~~~~~~~~l~~~~---~~ 450 (720)
.+...+-..|+.++..+-...++ ...+...+-+.+ +....+ ..+..-.|+-+.+..+.+.+ .+
T Consensus 509 a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~ 588 (960)
T KOG1992|consen 509 AESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAP 588 (960)
T ss_pred CcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhh
Confidence 77788888888888888433222 333333333332 111112 12222233333333333333 44
Q ss_pred hhHHHHHHHHHh----c-chh---HHHHHHHHHHhhcCCcc-cchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHh
Q 004992 451 RVLNHLLYLMRV----A-EKG---VQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 451 ~~~~~L~~ll~~----~-~~~---v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~ 521 (720)
.++..|.+++.. + +|. .-+.+..++.+.+++.+ ......+...+|.+...+..+-.+.--++...++.|.+
T Consensus 589 ~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve 668 (960)
T KOG1992|consen 589 ELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVE 668 (960)
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655543 1 222 23445555555544433 22233455667777788877766666677777777777
Q ss_pred hccc
Q 004992 522 KATT 525 (720)
Q Consensus 522 ~~~~ 525 (720)
+..+
T Consensus 669 ~~~~ 672 (960)
T KOG1992|consen 669 HSSG 672 (960)
T ss_pred hcCC
Confidence 6544
No 238
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.20 E-value=0.13 Score=38.57 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhcccCCCchhHHHhhcc
Q 004992 350 REMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 419 (720)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 419 (720)
.+.|++++++++. .+.....+.+.++++.++++. +++...+|-.+.++|.-++...+..+.+.+.|.
T Consensus 4 lKaaLWaighIgs---s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGS---SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhc---ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 5789999999998 666666666778999999988 567899999999999999999888777776653
No 239
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.20 E-value=5.5 Score=43.31 Aligned_cols=229 Identities=15% Similarity=0.130 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhc
Q 004992 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (720)
Q Consensus 264 ~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 343 (720)
.+...+...+..+-....+ .. +-.|.+..++.-..+.+..+|..++..|..+.. +.......+-.++...+..-+.
T Consensus 61 RIl~fla~fv~sl~q~d~e--~D-lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKE--ED-LVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCch--hh-HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHh
Confidence 4455555566665433222 22 335677777777778889999999999999874 3334444444567778888888
Q ss_pred CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhcccCCCchhHHHhhccccc
Q 004992 344 SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 422 (720)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~ 422 (720)
+..+.||..|+.+|+.+=. ++... +..+...+..++ ++++++||..++ .|++.++.....+++-.
T Consensus 137 Drep~VRiqAv~aLsrlQ~---d~~de----e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsTlp~IveRa---- 202 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQG---DPKDE----ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNSTLPCIVERA---- 202 (892)
T ss_pred ccCchHHHHHHHHHHHHhc---CCCCC----cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCcccchhHHHHh----
Confidence 9999999999999998874 22211 123455666666 678999999764 55555555544444310
Q ss_pred ccchhhhhhhhHHHHHH-HHHHH--HHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHH
Q 004992 423 LQDGEFIVQATKDCVAK-TLKRL--EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLG 499 (720)
Q Consensus 423 L~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ 499 (720)
. ......+.|+-. .+..+ ...-....+..+-+-+.+.+..|+.++..+|..= .-.+ ..|-++-+.+
T Consensus 203 -r---DV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~------Wl~~-~dgni~ElL~ 271 (892)
T KOG2025|consen 203 -R---DVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSG------WLRF-SDGNILELLE 271 (892)
T ss_pred -h---hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH------Hhhh-ccccHHHHHH
Confidence 0 001111222111 11111 0111112333333445666778888777766431 0011 1233444444
Q ss_pred hhc-CCCchhhhhHHHHHHHHHh
Q 004992 500 LLG-STNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 500 ll~-~~~~~v~~~a~~aL~~L~~ 521 (720)
-+. +.+.+++..+..||....+
T Consensus 272 ~ldvsnss~vavk~lealf~~v~ 294 (892)
T KOG2025|consen 272 RLDVSNSSEVAVKALEALFSGVR 294 (892)
T ss_pred HhccccchHHHHHHHHHHHHHHH
Confidence 444 5666899999999888543
No 240
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.14 E-value=1 Score=50.89 Aligned_cols=179 Identities=17% Similarity=0.166 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHh-hcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHH
Q 004992 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256 (720)
Q Consensus 178 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ 256 (720)
.|.-+..|+..+...+.... ........+.+..++.. +.+.|..+...++.+|..++......-.... .++.|.++.
T Consensus 266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v~p~lld 343 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KNVFPSLLD 343 (815)
T ss_pred chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-HhhcchHHH
Confidence 34566667776666665332 11111111223333332 3567888999999999999975444433333 357899999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCc-chhhHHHhcCCh
Q 004992 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAV 335 (720)
Q Consensus 257 ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~ 335 (720)
-+.+..+.++..+..++-.+..... .....+.+...+.+.++.++..+...+........ .....-.-.+++
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~ 416 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLV 416 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHh
Confidence 9999888888887777777754222 12357888899999999999998877776665433 333333335678
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhhc
Q 004992 336 RPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (720)
Q Consensus 336 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (720)
|.++....+.+.+||.+|..++..+....|
T Consensus 417 p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 417 PHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred HHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999888554
No 241
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.91 E-value=1.7 Score=44.60 Aligned_cols=169 Identities=18% Similarity=0.158 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHcc-Ch-hhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHH
Q 004992 78 AAAKRATHVLAELAK-NE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (720)
Q Consensus 78 ~~~~~a~~~L~~l~~-~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~ 154 (720)
+-+..|+.-|..+.. ++ ...+... ..++..+++.|.+... +..+..|+++|..++ ..+.- -.--
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~-----------~~~k~laLrvL~~ml~~Q~~~-l~Ds 368 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSED-----------EIIKKLALRVLREMLTNQPAR-LFDS 368 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchh-----------hHHHHHHHHHHHHHHHhchHh-hhch
Confidence 357777776666655 42 2222222 2256777888877333 178999999999999 33321 1111
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHH-HHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHH
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA-ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (720)
..-++..++..-++..+ ++...|... +.-++...+. +. +..+..++-..|...-..++..+-.
T Consensus 369 tE~ai~K~Leaa~ds~~--------~v~~~Aeed~~~~las~~P~-~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 369 TEIAICKVLEAAKDSQD--------EVMRVAEEDCLTTLASHLPL-QC-------IVNISPLILTADEPRAVAVIKMLTK 432 (516)
T ss_pred HHHHHHHHHHHHhCCch--------hHHHHHHHHHHHHHHhhCch-hH-------HHHHhhHHhcCcchHHHHHHHHHHH
Confidence 12245555555555555 666666654 4445554443 22 2233333333555565566666666
Q ss_pred hccCChhcHHHHHh--CCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 004992 234 LAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 234 L~~~~~~~~~~i~~--~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~ 277 (720)
+.. .-.++.+.. ..+.|.+++...+.+..||+.|+.+|..+.
T Consensus 433 l~e--~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 433 LFE--RLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHh--hcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 664 222333322 458999999999999999999999998885
No 242
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.89 E-value=0.78 Score=49.78 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=116.0
Q ss_pred HcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcc
Q 004992 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMH 368 (720)
Q Consensus 289 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (720)
..-.++.|..+++..++ ...-+.++.++-.--......-+...++|.|..-+++.+..+++.++..+..+++ .-+
T Consensus 347 ~~~~~p~l~pi~~~~~~--~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e---~iD 421 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASDP--KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAE---SID 421 (700)
T ss_pred hhhhhHHHHHHhccCCc--ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHH---hcc
Confidence 34466777777664221 1222333333311111233334456788999999999999999999999999998 323
Q ss_pred hhhhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHh
Q 004992 369 NQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 447 (720)
Q Consensus 369 ~~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~ 447 (720)
...+..-++|.+-.+. ++.+..++.+++.++..+...-+ ...
T Consensus 422 --~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD------~~~----------------------------- 464 (700)
T KOG2137|consen 422 --VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD------KAA----------------------------- 464 (700)
T ss_pred --HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH------HHH-----------------------------
Confidence 3345556677776654 56688889999988888772211 111
Q ss_pred hhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhh
Q 004992 448 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLD 511 (720)
Q Consensus 448 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~ 511 (720)
--+.+..+....+..+|.+.....++..++.........+...+++|.+..+...+.-....+
T Consensus 465 -v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy 527 (700)
T KOG2137|consen 465 -VLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQY 527 (700)
T ss_pred -hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHHH
Confidence 112455666777888999999999988888665554345566788888888877666444443
No 243
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.76 E-value=1.4 Score=49.90 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=127.6
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHH-HhcCChHHHHHH-hcCCCHHHHHHHHHHHHHHhhhhcCcc
Q 004992 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI-VQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQVITDMH 368 (720)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (720)
.+-+.+..-+.+.+|.-|.+++..+........ .... ...+.+-.++.. +.+.+..+...++..|..++...+ .
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr--~ 328 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR--P 328 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc--h
Confidence 345566666778899999999998887775322 1111 112333333333 255677888889999999998322 1
Q ss_pred hhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhh
Q 004992 369 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 448 (720)
Q Consensus 369 ~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (720)
. ..=...+..+.+++.+....+.++..+..++-.++....
T Consensus 329 ~-~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--------------------------------------- 368 (815)
T KOG1820|consen 329 L-FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--------------------------------------- 368 (815)
T ss_pred h-hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc---------------------------------------
Confidence 1 222234567888888888888888888887777665211
Q ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCccc--chhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 449 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ--RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 449 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
-..+.+.+...+++++|.++..+...+.......+. ...-.-.+.+|.++....+.+.+||..|..++..+.+.
T Consensus 369 l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 369 LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 112556677889999999999988888777554441 11122345688888999999999999999999988763
No 244
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.72 E-value=0.37 Score=41.56 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=76.1
Q ss_pred CCCcceEEEEECCeEEehhHHHHhhcchhHhhcc-cCCcC---CCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhHH
Q 004992 549 NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMF-DGGYR---EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ 624 (720)
Q Consensus 549 ~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~-~~~~~---e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~ 624 (720)
.|....|.+.++|..|-..|.-|+--+.-|-.-| ..... .....--.+-|=+|.-|..+|.|+-.|++-++.-.-.
T Consensus 17 ~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~ee 96 (210)
T KOG2715|consen 17 NGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEE 96 (210)
T ss_pred CCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhh
Confidence 3445678899999999999999998885555444 33211 1112223334668899999999999999998885556
Q ss_pred HHHHHHhhhChHHHHHHHHHHHHhcC
Q 004992 625 DLLRAADQYLLEGLKRLCEYTIAQDI 650 (720)
Q Consensus 625 ~ll~~A~~~~~~~l~~~c~~~l~~~i 650 (720)
.++.=|++|.++.|..+..+.|....
T Consensus 97 GvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 97 GVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred ccchhhhccCChHHHHHHHHHHHHHh
Confidence 79999999999999998887777653
No 245
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.30 E-value=1.1 Score=41.25 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHc----------------CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhh
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDN----------------GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~----------------~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~ 194 (720)
.....++.+|+||+..+.....+.+. ..+..|+.++....+.... ..+-....+.++.|++.
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n--~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYN--KKDNYDYLASVLANLSQ 87 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCC--CCcchhHHHHHHHHhcC
Confidence 45667888999999555555533322 3567777777662211100 01556788999999998
Q ss_pred cCchhhHHHHhc--CC--cHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhC---CCHHHHHH
Q 004992 195 ENSSIKTRVRME--GG--IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC---NALPTLIL 256 (720)
Q Consensus 195 ~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~---g~l~~L~~ 256 (720)
.+..|..+... +. +..|+.+..+.+..-|.-++.+|.|+|.+. +....+... +++|.|+-
T Consensus 88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~-~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT-DSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred -CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH-hHHHHhcCchhhhhHHHHHh
Confidence 77788877755 23 677888888888777888999999999844 443444432 34444443
No 246
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.98 E-value=7.6 Score=43.89 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=111.8
Q ss_pred HHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHH--HHHHHhcCCC
Q 004992 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLV--PLLKLLDSKN 390 (720)
Q Consensus 314 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~--~l~~ll~~~~ 390 (720)
+|++++..++.....+.+.+++..+...++. ....++..+.+.+.+++. ..+.+........+. .+..++..-+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~---~~~~~~~~~~~~~~~~~~f~~~~~~w~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAE---VLELRELLMIFEFIDFSVFKVLLNKWD 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 8889988888999999999999999999986 678899999999999998 443333322222222 3333444444
Q ss_pred h-hHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHH--------hhhhhhHHH-HHHHH
Q 004992 391 G-SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE--------KIHGRVLNH-LLYLM 460 (720)
Q Consensus 391 ~-~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~-L~~ll 460 (720)
. +.-..++.+|..+..+.+.... ...++|+..-+..... ........+ +..++
T Consensus 571 ~~ersY~~~siLa~ll~~~~~~~~-----------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEKTTE-----------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRIL 633 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCcCcc-----------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHh
Confidence 4 7888899999988654332000 0011111111111101 111122222 44444
Q ss_pred H-hcchhHHHHHHHHHHhhcCCc-ccchhhhccCcHHHHHHhhcC-CCchhhhhHHH
Q 004992 461 R-VAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAV 514 (720)
Q Consensus 461 ~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~ 514 (720)
. +..+..+..|++++.++.... ++++...+.++++.+.+.-.. ...+++..+..
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVL 690 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHH
Confidence 4 447788999999999997654 477777888888887765433 23344444433
No 247
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.83 E-value=5.1 Score=42.17 Aligned_cols=158 Identities=15% Similarity=0.199 Sum_probs=113.1
Q ss_pred HHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHH
Q 004992 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA 186 (720)
Q Consensus 107 ~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~ 186 (720)
..+..++.+++. .-+..+...|..++.++.+...++...++..|.+++.+...-.. .++...++
T Consensus 86 ~~i~e~l~~~~~------------~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~----~~~L~~~L 149 (713)
T KOG2999|consen 86 KRIMEILTEGNN------------ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMS----SELLSTSL 149 (713)
T ss_pred HHHHHHHhCCCc------------HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchH----HHHHHHHH
Confidence 355667777766 56666999999999889999999999999999999988765211 16666666
Q ss_pred HHHHHhhhcCchhhHHHHhcCCcHHHHHhh--cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHH
Q 004992 187 DAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 264 (720)
Q Consensus 187 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~ 264 (720)
.++..+....- ..-......++.....+. +..+..+...|+..|-++..+++..+..+.+.--+..|+..+...+..
T Consensus 150 ~af~elmehgv-vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~ 228 (713)
T KOG2999|consen 150 RAFSELMEHGV-VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQR 228 (713)
T ss_pred HHHHHHHhhce-eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchH
Confidence 66666554221 111111122333333333 233567788899999999987777888888887899999999999999
Q ss_pred HHHHHHHHHHHhhcCCc
Q 004992 265 IHYEAVGVIGNLVHSSP 281 (720)
Q Consensus 265 v~~~a~~~L~nL~~~~~ 281 (720)
++..|+..+..+....+
T Consensus 229 i~~~aial~nal~~~a~ 245 (713)
T KOG2999|consen 229 IQTCAIALLNALFRKAP 245 (713)
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 99888888888764434
No 248
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.61 E-value=7.5 Score=40.21 Aligned_cols=256 Identities=16% Similarity=0.077 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCC------CccchhhhHHHHHHHHHHHHhhhcCchhhHHH
Q 004992 132 VEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMD------SNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (720)
Q Consensus 132 v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~------~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 203 (720)
+....++++..+. +-|+.-..-. ...+..+..+|..+.+ +....+.+.++..++..+...+...++.-..+
T Consensus 56 ~l~lilKiF~sL~~~DLPe~fed~l-~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~ 134 (370)
T PF08506_consen 56 MLKLILKIFYSLNCQDLPEFFEDNL-SEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPF 134 (370)
T ss_dssp HHHHHHHHHHHHHSSS--HHHHHTH-HHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHccCcCcHHHHHHH-HHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666 3344322211 1234444444443321 12233455777777777777776544332222
Q ss_pred HhcCCcHHHHHhhcCC-----CHHHHHHHHHHHHHhccCChhcH---------HHHHhCCCHHHHH------Hhhc----
Q 004992 204 RMEGGIPPLVELLEFT-----DTKVQRAAAGALRTLAFKNDENK---------NQIVECNALPTLI------LMLR---- 259 (720)
Q Consensus 204 ~~~~~i~~L~~ll~~~-----~~~v~~~a~~~L~~L~~~~~~~~---------~~i~~~g~l~~L~------~ll~---- 259 (720)
. ..++..+.++|..- ...+...++..|..++. .+..+ +.+++.=++|.+. .+..
T Consensus 135 l-~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~ 212 (370)
T PF08506_consen 135 L-PTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAE-SPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPE 212 (370)
T ss_dssp H-HHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHH
T ss_pred H-HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHc-chhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHH
Confidence 1 24455555565331 25566677777777664 23222 2233221222221 1111
Q ss_pred ---------CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc------cCChHHHHHHHHHHHHHhccCcc
Q 004992 260 ---------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS------SCCSESQREAALLLGQFAATDSD 324 (720)
Q Consensus 260 ---------~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~ 324 (720)
++...-|..|+..+..|+...+.....+ +...+..++. +.+|.-+..|+..+..++.....
T Consensus 213 EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t 288 (370)
T PF08506_consen 213 EYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST 288 (370)
T ss_dssp HHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred HHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence 1122457788999999974422221111 2233334443 34688888899999999854321
Q ss_pred ------------hhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChh
Q 004992 325 ------------CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGS 392 (720)
Q Consensus 325 ------------~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~ 392 (720)
....++...++|-|. --.+..|-++..|++.+..+-... ....+ .++++.+++.|.+++..
T Consensus 289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l----~~~~l--~~~~~~l~~~L~~~~~v 361 (370)
T PF08506_consen 289 TKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL----PKEQL--LQIFPLLVNHLQSSSYV 361 (370)
T ss_dssp BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----HHHH--HHHHHHHHHHTTSS-HH
T ss_pred ccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC----CHHHH--HHHHHHHHHHhCCCCcc
Confidence 123344555566554 112356778888888888777621 12222 24789999999999999
Q ss_pred HHHHHHHHH
Q 004992 393 LQHNAAFAL 401 (720)
Q Consensus 393 v~~~a~~~L 401 (720)
|...|+.++
T Consensus 362 v~tyAA~~i 370 (370)
T PF08506_consen 362 VHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhC
Confidence 999888775
No 249
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.45 E-value=17 Score=38.77 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=73.5
Q ss_pred CCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 103 ~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
.|.+..+++-+++++. .||..++.+|+.+.+...-.+.....+.+..|.+-+-+.++ .|+
T Consensus 90 ~~~~~h~lRg~eskdk------------~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~--------~VR 149 (885)
T COG5218 90 AGTFYHLLRGTESKDK------------KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREK--------AVR 149 (885)
T ss_pred HHHHHHHHhcccCcch------------hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchH--------HHH
Confidence 3456666666667666 89999999999999555445566677888888888877777 999
Q ss_pred HHHHHHHHHhhhc--CchhhHHHHhcCCcHHHHHhh-cCCCHHHHHHHHHHHHHhcc
Q 004992 183 RRAADAITNLAHE--NSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAF 236 (720)
Q Consensus 183 ~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~ 236 (720)
..|+.+|..+-.. +++++ ....|..++ .+++.+||+.| |.|+..
T Consensus 150 ~eAv~~L~~~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~a---llni~v 196 (885)
T COG5218 150 REAVKVLCYYQEMELNEENR-------IVNLLKDIVQNDPSDEVRRLA---LLNISV 196 (885)
T ss_pred HHHHHHHHHHHhccCChHHH-------HHHHHHHHHhcCcHHHHHHHH---HHHeee
Confidence 9999999988742 33222 223555555 46778999855 455554
No 250
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.18 E-value=0.65 Score=42.74 Aligned_cols=127 Identities=18% Similarity=0.135 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhhcCcchhhhhh----------------hcCCHHHHHHHhcC------CChhHHHHHHHHH
Q 004992 344 SPDVQLREMSAFALGRLAQVITDMHNQAGIA----------------HNGGLVPLLKLLDS------KNGSLQHNAAFAL 401 (720)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~----------------~~~~i~~l~~ll~~------~~~~v~~~a~~~L 401 (720)
++.......++-.|+|++. .+.....+. +...+..|++++.. ....-....+.++
T Consensus 6 ~~~~~~adl~~MLLsNlT~---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTR---SDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred CCCcchHHHHHHHHHHhcc---chHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 3444556666777777776 444333222 22346667776633 2344556788899
Q ss_pred HhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCC
Q 004992 402 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 481 (720)
Q Consensus 402 ~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 481 (720)
.|++..++.+..+++..- ..+.+.+|+....+.+..-|..++.+|.|+|.+
T Consensus 83 ~NlS~~~~gR~~~l~~~~-----------------------------~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 83 ANLSQLPEGRQFFLDPQR-----------------------------YDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred HHhcCCHHHHHHHhCchh-----------------------------hhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence 999999888887776431 001467788888888878788999999999999
Q ss_pred cccchhhhcc---CcHHHHHHhhc
Q 004992 482 DDQRTIFIDG---GGLELLLGLLG 502 (720)
Q Consensus 482 ~~~~~~~~~~---~~~~~L~~ll~ 502 (720)
.+....+... +.+|.|.--+.
T Consensus 134 ~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 134 TDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HhHHHHhcCchhhhhHHHHHhhcc
Confidence 8877766664 44555544443
No 251
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=1.7 Score=45.66 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=98.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHc
Q 004992 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (720)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~l-l~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~ 290 (720)
+-+++.+.++-+|......++.--.+ . .+.|++..+++. .++.+.+||+.|+-+|+-++..+..
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~G-T------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------- 585 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVG-T------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------- 585 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhc-C------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------
Confidence 44555666666666655544422111 1 125677777776 6778999999999999988766443
Q ss_pred CChHHHHHhhcc-CChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcch
Q 004992 291 GALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHN 369 (720)
Q Consensus 291 ~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (720)
.++..+++|.. .++.+|...+.+|+-.|++..... ++..|-.++.+...-+|..|+-+++.+.... .++.
T Consensus 586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~-n~~L 656 (926)
T COG5116 586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQC-NPEL 656 (926)
T ss_pred -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc-Cccc
Confidence 45666677764 478888888889987776443321 3566667778888999999999998877611 1111
Q ss_pred hhhhhhcCCHHHHHHHhcCCC
Q 004992 370 QAGIAHNGGLVPLLKLLDSKN 390 (720)
Q Consensus 370 ~~~l~~~~~i~~l~~ll~~~~ 390 (720)
.... .++...+.+++.+++
T Consensus 657 np~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhH--HHHHHHHHHHHhhhh
Confidence 1111 245666777775443
No 252
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=92.10 E-value=0.1 Score=51.62 Aligned_cols=139 Identities=18% Similarity=0.181 Sum_probs=107.9
Q ss_pred eEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChh--hHHHHHHHHh
Q 004992 554 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD--IAQDLLRAAD 631 (720)
Q Consensus 554 Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~--~~~~ll~~A~ 631 (720)
+..+......+++|+.+|...|+.|..+....-..+..+.+..-..+...+..+.+++|.. ++--+. ....++.+..
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~ 106 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSH 106 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhh
Confidence 4444555678999999999999999887765422233345666677889999999999988 432222 2446666667
Q ss_pred hhChHHHHHHHHHHHHh-cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHh
Q 004992 632 QYLLEGLKRLCEYTIAQ-DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSN 693 (720)
Q Consensus 632 ~~~~~~l~~~c~~~l~~-~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~ 693 (720)
.|.++.++..|...+.. .++..+++..+..+..|....|...+...+...|....+++.+..
T Consensus 107 ~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~ 169 (319)
T KOG1778|consen 107 VYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFA 169 (319)
T ss_pred hhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCcee
Confidence 89999999988877766 478899999999999999999999999999999998888665544
No 253
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=19 Score=39.75 Aligned_cols=123 Identities=12% Similarity=0.056 Sum_probs=78.0
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhh--cCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH--ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (720)
-.|.++.++..|......+..-....-.+.|++.++++.. ..+.....+.+.-+++.++..++++.--++..+|..+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 3578899999995443322221111233456666666553 22222223444556677777888888889999999999
Q ss_pred HhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 004992 233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (720)
Q Consensus 233 ~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~ 280 (720)
.+..+-+++ -.-..+.....+.+++.+-.|+..|+-++.-+..++
T Consensus 486 ~~eeDfkd~---~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 486 TIEEDFKDN---GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHhcccc---hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 996433332 222335677778888888889988888888886554
No 254
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.77 E-value=4.3 Score=43.90 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=101.3
Q ss_pred CcHHHHHhhcC----CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcc
Q 004992 208 GIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN 282 (720)
Q Consensus 208 ~i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~-~~~~~v~~~a~~~L~nL~~~~~~ 282 (720)
+-|.+.+.+.+ .|+.++.+|.-+|..+..-+. +...+ -+|.++..+. +++|.+|.+|+-.++.++..-..
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~---~fc~e--hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSF---EFCSE--HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhH---HHHHH--HHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 34555555544 678999888888887764121 12222 4888998887 78999999999888888754333
Q ss_pred hHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
.... .-..|..-|.+.+..+++.|..++.++.-.+ .+.-.|-++.+..+|.+++..+...|-..+..++.
T Consensus 968 ~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 968 TADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred hhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 2222 2356777788888999999999999886422 12235778888999999999999999999999987
No 255
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=1.9 Score=35.52 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=67.2
Q ss_pred EEEE-ECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcc----------------
Q 004992 555 VTFL-VEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVD---------------- 617 (720)
Q Consensus 555 v~~~-~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~---------------- 617 (720)
+.+. .+|..|.+.+.+ |-+|-..+.|+... .+.. -.+..+.+...+|..+++|+-..+-.
T Consensus 4 i~l~s~dge~F~vd~~i-AerSiLikN~l~d~-~~~n-~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 4 IELESIDGEIFRVDENI-AERSILIKNMLCDS-TACN-YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred eEEEecCCcEEEehHHH-HHHHHHHHHHhccc-cccC-CCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 3443 466788888776 66888888877532 1111 13566789999999999999654322
Q ss_pred ---------cChhhHHHHHHHHhhhChHHHHHHHHHHHHhcCC
Q 004992 618 ---------VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS 651 (720)
Q Consensus 618 ---------~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~ 651 (720)
++.+.+.++.-+|+++.++.|.+.|+..+.+.|.
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 1235677899999999999999999988777654
No 256
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=91.41 E-value=17 Score=37.77 Aligned_cols=266 Identities=15% Similarity=0.125 Sum_probs=136.7
Q ss_pred CcchHHHHHHHHHHHHHhccChhhHHHHHHcC---ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHH
Q 004992 126 KPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG---ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (720)
Q Consensus 126 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 202 (720)
.|++.++..+|+++|+.+..+++....+-+.- .+...+..+.+...+ . .+....+|+|..--.. ..
T Consensus 56 ~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~---K---~i~~~~l~~ls~Q~f~-----~~ 124 (372)
T PF12231_consen 56 DPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSP---K---SICTHYLWCLSDQKFS-----PK 124 (372)
T ss_pred CCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCC---H---HHHHHHHHHHHcCCCC-----Cc
Confidence 34566899999999999998877765544332 344444555444332 1 6777777777653331 12
Q ss_pred HHhcCCcHHHHHhh---c--CCCHHHHHHHHHHHHHhccCChhcHHHHHhCC-CHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 203 VRMEGGIPPLVELL---E--FTDTKVQRAAAGALRTLAFKNDENKNQIVECN-ALPTLILMLRSEDSAIHYEAVGVIGNL 276 (720)
Q Consensus 203 ~~~~~~i~~L~~ll---~--~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g-~l~~L~~ll~~~~~~v~~~a~~~L~nL 276 (720)
+.....+..++..+ . -++..+....+.++.++....+.. +....+ -+|.++..+-+....+|..|..++..+
T Consensus 125 ~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 125 IMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred ccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 33334445555444 2 355778888899999998633332 222222 578888877777888888777666555
Q ss_pred hcCC---cchHHHHH---Hc----C-----ChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHH
Q 004992 277 VHSS---PNIKKEVL---AA----G-----ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (720)
Q Consensus 277 ~~~~---~~~~~~~~---~~----~-----~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 341 (720)
...- ....+.+. +. + +.+.+..++.+.+......-+|...-+.-+++....--.-...+...-..
T Consensus 203 ~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~c 282 (372)
T PF12231_consen 203 KKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKC 282 (372)
T ss_pred HHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHH
Confidence 4211 11111111 11 1 22235555555222222222222221111222111111112234444445
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhhcCcchh-hhhhhcCCHHHHHHHhcC-CCh----hHHHHHHHHHHhcc
Q 004992 342 LQSPDVQLREMSAFALGRLAQVITDMHNQ-AGIAHNGGLVPLLKLLDS-KNG----SLQHNAAFALYGLA 405 (720)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~l~~~~~i~~l~~ll~~-~~~----~v~~~a~~~L~~l~ 405 (720)
+.++++.+|..|..+=..+.......+.. .....- ...++...+.. ... .++..+...+.++.
T Consensus 283 Fn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 283 FNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 67889999999988877777622222111 111111 22333333322 222 66777777777774
No 257
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=90.91 E-value=25 Score=39.99 Aligned_cols=128 Identities=9% Similarity=0.112 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHH
Q 004992 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLK 384 (720)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ 384 (720)
.++..+.-+|+++|-....... ..+|.+++-|.. ....+|-+.+-+++.+|. +....-...+|.+..
T Consensus 946 ~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~-------~YTam~d~YiP~I~~ 1013 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICS-------SYTAMTDRYIPMIAA 1013 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHH-------HHHHHHHHhhHHHHH
Confidence 3466666778887753333222 256888877754 556777777777777776 122334457888999
Q ss_pred HhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcc
Q 004992 385 LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE 464 (720)
Q Consensus 385 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~ 464 (720)
.|.++++-||+.+.-.|.+|....- -.|.+.++-+++--+-+.+
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~------------------------------------vKw~G~Lf~Rf~l~l~D~~ 1057 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGI------------------------------------VKWNGELFIRFMLALLDAN 1057 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhh------------------------------------hhcchhhHHHHHHHHcccC
Confidence 9999999999999998888764221 1123333444444455678
Q ss_pred hhHHHHHHHHHHhhcCC
Q 004992 465 KGVQRRVALALAHLCSP 481 (720)
Q Consensus 465 ~~v~~~a~~~L~~l~~~ 481 (720)
++++..|-..++.+...
T Consensus 1058 edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1058 EDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888887777776443
No 258
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.72 E-value=4.2 Score=37.48 Aligned_cols=149 Identities=11% Similarity=0.113 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHcC
Q 004992 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (720)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~ 157 (720)
...|+..|.-++++|+.+..+++..+--.+...|...+.. ++++ -+|..++.+++.|. +++.....+....
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~------~~fE-yLRltsLGVIgaLvkNdsq~vi~fLltTe 189 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSN------SKFE-YLRLTSLGVIGALVKNDSQYVIKFLLTTE 189 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccC------Cccc-eeeehHHHHHHHHHhCCCHHHHHHHHhhh
Confidence 5677778888888999999888886655556666544331 1222 68889999999999 6778888888889
Q ss_pred ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHh--------cCCcHHH-HHhhcCCCHHHHHHHH
Q 004992 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--------EGGIPPL-VELLEFTDTKVQRAAA 228 (720)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~~i~~L-~~ll~~~~~~v~~~a~ 228 (720)
++|.+++++...+. --+..|+.++..+..++...+ .+.+ ...+..+ .++...+...+...++
T Consensus 190 ivPLcLrIme~gSE--------lSktvaifI~qkil~dDvGLq-YiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~i 260 (315)
T COG5209 190 IVPLCLRIMELGSE--------LSKTVAIFIFQKILGDDVGLQ-YICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAI 260 (315)
T ss_pred HHHHHHHHHHhhhH--------HHHHHHHHHHHHHhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 99999999987765 344455555555544332211 1110 1112222 2334456677778888
Q ss_pred HHHHHhccCChhcHHHH
Q 004992 229 GALRTLAFKNDENKNQI 245 (720)
Q Consensus 229 ~~L~~L~~~~~~~~~~i 245 (720)
++-..|+. ++..+..+
T Consensus 261 RcYlRLsd-~p~aR~lL 276 (315)
T COG5209 261 RCYLRLSD-KPHARALL 276 (315)
T ss_pred HHheeecC-CHhHHHHH
Confidence 88888884 55555444
No 259
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=3.4 Score=40.28 Aligned_cols=142 Identities=14% Similarity=0.186 Sum_probs=95.9
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhh
Q 004992 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQA 371 (720)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 371 (720)
.+...+..|.+.+|.....++..|..++...++...... ..++..+++-+++....|-..|+-++..+... ......
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~--ln~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSS--LNNSID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 345566778888999999999999988865443322222 23556666777888889999999999988871 111111
Q ss_pred hhhhcCCHHHHHHHh----cCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHh
Q 004992 372 GIAHNGGLVPLLKLL----DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 447 (720)
Q Consensus 372 ~l~~~~~i~~l~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~ 447 (720)
. -++.++..| ...+.-++..|-.+|..+..+...
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------------------------------------- 203 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------------------------------------- 203 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------------------------------------
Confidence 1 233344333 234566888899999888765432
Q ss_pred hhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcC
Q 004992 448 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 480 (720)
Q Consensus 448 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 480 (720)
..+++.|+..+...++.++..++.+..++..
T Consensus 204 --~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 204 --QKLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred --HHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 2356778888889999999888887766643
No 260
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=89.99 E-value=1.9 Score=32.32 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcC
Q 004992 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (720)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 157 (720)
...|++++++++..+.....+.+.++++.++++.+..+.- .+|-.|..+|+-++...+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~-----------siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVL-----------SIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCcc-----------chHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5679999999999877777777889999999999865442 799999999999998888777766655
No 261
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.98 E-value=19 Score=34.65 Aligned_cols=134 Identities=20% Similarity=0.116 Sum_probs=85.5
Q ss_pred HhHHHHHHHHHHHHHHccCh-hhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHH
Q 004992 75 ADRAAAKRATHVLAELAKNE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (720)
Q Consensus 75 ~d~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~ 152 (720)
.++..+...+..|..++.+. ..... ++..|..+.+.+.. +.+..+.+.+..+. .++..-
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~------------~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSL------------ELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCch------------hHHHHHHHHHHHHHHhCchHH--
Confidence 56778999999999999865 33333 34566667766655 55666777777777 444332
Q ss_pred HHHcCChHHHHHHH--hccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh-cCCCHHHHHHHHH
Q 004992 153 IVDNGALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAG 229 (720)
Q Consensus 153 ~~~~~~l~~L~~lL--~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~ 229 (720)
+.+..++..+ +...........++........+..+|...++. ....++.+..++ ++.++.++..++.
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHH
Confidence 2344443331 101111111122366666667888899867652 224678888888 7888999999999
Q ss_pred HHHHhcc
Q 004992 230 ALRTLAF 236 (720)
Q Consensus 230 ~L~~L~~ 236 (720)
+|..++.
T Consensus 145 ~l~~Lc~ 151 (234)
T PF12530_consen 145 ALAPLCE 151 (234)
T ss_pred HHHHHHH
Confidence 9999993
No 262
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=89.82 E-value=25 Score=35.85 Aligned_cols=174 Identities=11% Similarity=0.039 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHH
Q 004992 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (720)
Q Consensus 55 ~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~ 134 (720)
....-..+++.|....-. ..+...+.++.-++.+.....-+.....+..|+.+-+-...+. ..+..-+..+..
T Consensus 43 r~eL~e~i~~Vle~~~p~-----t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~--sl~~v~d~~vi~ 115 (532)
T KOG4464|consen 43 RKELGERIFEVLENGEPL-----THRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNEN--SLPTVADMHVIM 115 (532)
T ss_pred HHHHHHHHHHHHhcCCCc-----hhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccC--CCCcccchHHHH
Confidence 555556677777776322 2456667777766665443333333333444544433211100 011111237888
Q ss_pred HHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhH-HHHhcCCcHHH
Q 004992 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-RVRMEGGIPPL 212 (720)
Q Consensus 135 ~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L 212 (720)
.+.++|.|+. .++..++...+......+++.+.......... .+...-++.|.-+..-....|. .+...++++.+
T Consensus 116 EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~---~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~l 192 (532)
T KOG4464|consen 116 ESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPK---DSSIFDLRLLFLLTALETDHRSQLIAELLGLELL 192 (532)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc---cchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHH
Confidence 8999999999 89999999998888888887775432211000 2223333444433332334443 45667889999
Q ss_pred HHhhcCC---------------CHHHHHHHHHHHHHhccCC
Q 004992 213 VELLEFT---------------DTKVQRAAAGALRTLAFKN 238 (720)
Q Consensus 213 ~~ll~~~---------------~~~v~~~a~~~L~~L~~~~ 238 (720)
.+.+.++ +......++.++.|++.+.
T Consensus 193 t~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 193 TNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 8888642 1244567788888988643
No 263
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.77 E-value=21 Score=34.91 Aligned_cols=208 Identities=11% Similarity=0.076 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCc
Q 004992 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (720)
Q Consensus 131 ~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (720)
.+|..|...|+.+. .-|.. .....-+..|+.+..+.-++. .....++..+..|.....-.... ....+
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~------~~~~~~l~gl~~L~~~~~~~~~~--~~~i~ 82 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDH------ACVQPALKGLLALVKMKNFSPES--AVKIL 82 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccH------hhHHHHHHHHHHHHhCcCCChhh--HHHHH
Confidence 89999999999888 33321 122233566666665443322 44555577777777432211111 11222
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcchHHH
Q 004992 210 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE 286 (720)
Q Consensus 210 ~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~nL~~~~~~~~~~ 286 (720)
..+.+-.. .-....|..+...+..+..........+ ..+.+..++..+..+ ||.-...+...+..+...-+.
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~---- 157 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI---- 157 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc----
Confidence 33333222 2236778888898888886333222222 234678888888764 777766666666666533221
Q ss_pred HHHcCChHHHHHhhcc----------CCh--HHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 004992 287 VLAAGALQPVIGLLSS----------CCS--ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 354 (720)
Q Consensus 287 ~~~~~~l~~L~~ll~~----------~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 354 (720)
....+-+.+.+.- +++ -.+..-...|.+.-...+... .-++|.|++-|.++.+.++..++
T Consensus 158 ---~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 158 ---SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred ---chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHHHHH
Confidence 2233344444421 111 234444455555443333332 34689999999999999999999
Q ss_pred HHHHHHhh
Q 004992 355 FALGRLAQ 362 (720)
Q Consensus 355 ~~L~~l~~ 362 (720)
.+|...+.
T Consensus 230 ~tL~~c~~ 237 (262)
T PF14500_consen 230 QTLKACIE 237 (262)
T ss_pred HHHHHHHH
Confidence 99998877
No 264
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.71 E-value=12 Score=36.57 Aligned_cols=217 Identities=15% Similarity=0.084 Sum_probs=121.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhcc--CChHHHHHHHHHHHHHhccCcchhhHHH
Q 004992 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIV 330 (720)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 330 (720)
.|-..|.++++.+|..++..|+.+...-+.. .....-+..|++.+.+ .++.....++..+..+... .......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~-~~~~~~~- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKM-KNFSPES- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhC-cCCChhh-
Confidence 3456678899999999999999887554421 1222223444444432 2455555556666666532 1211111
Q ss_pred hcCChHHHHHHh--cCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhcccC
Q 004992 331 QRGAVRPLIEML--QSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADN 407 (720)
Q Consensus 331 ~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~ 407 (720)
...++..+.+-. +......|..+...+..+.. .......-...+.+..+++++ ..++|+-...+...+..+...
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~---~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLE---NHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH---HhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 111233333322 22345778889999998888 221111222345677777777 457888877777777777542
Q ss_pred ---CCchhHHHhh--cccccccc----------hhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHH
Q 004992 408 ---EDNVADFIRV--GGVQKLQD----------GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 472 (720)
Q Consensus 408 ---~~~~~~l~~~--~~v~~L~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 472 (720)
.+..+.+.+. -..|.--+ ........+.|+.. +..+.+..++.|++-+.++.+.++.-++
T Consensus 155 ~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-----~~~fa~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 155 FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-----TPLFAPFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-----cHhhHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 3333334332 11221100 01111122222221 2345667899999999999999999999
Q ss_pred HHHHhhcCCc
Q 004992 473 LALAHLCSPD 482 (720)
Q Consensus 473 ~~L~~l~~~~ 482 (720)
.+|..++..-
T Consensus 230 ~tL~~c~~~y 239 (262)
T PF14500_consen 230 QTLKACIENY 239 (262)
T ss_pred HHHHHHHHHC
Confidence 9998886644
No 265
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=89.68 E-value=21 Score=38.48 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHh------cchhHHHHHHHHHHhhcCCc--ccchhhhccC--cHHHHHHhhcCCCchhhhhHHHHHHHHH
Q 004992 451 RVLNHLLYLMRV------AEKGVQRRVALALAHLCSPD--DQRTIFIDGG--GLELLLGLLGSTNPKQQLDGAVALFKLA 520 (720)
Q Consensus 451 ~~~~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--~~~~L~~ll~~~~~~v~~~a~~aL~~L~ 520 (720)
..+..|..++.+ ++..+-..|+..+..+..+. +....+--.- .++.|...++.+++.+-......+.++.
T Consensus 250 ~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 250 SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 356667777732 24456667888888886665 2222221222 6788889999888888888888888888
Q ss_pred h
Q 004992 521 N 521 (720)
Q Consensus 521 ~ 521 (720)
.
T Consensus 330 ~ 330 (464)
T PF11864_consen 330 D 330 (464)
T ss_pred h
Confidence 4
No 266
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.68 E-value=43 Score=38.55 Aligned_cols=254 Identities=19% Similarity=0.143 Sum_probs=142.6
Q ss_pred HHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHh
Q 004992 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (720)
Q Consensus 137 ~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (720)
..+|..|. ++.+++..+.+.+++..++.++-+. +-+...++++..|...++.. +....+-.++..
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind----------ehRSslLrivscLitvdpkq----vhhqelmalVdt 728 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND----------EHRSSLLRIVSCLITVDPKQ----VHHQELMALVDT 728 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech----------HHHHHHHHHHHHHhccCccc----ccHHHHHHHHHH
Confidence 45666666 6777777777777777777776322 66777778888777644431 111233455666
Q ss_pred hcCC--------C----HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC----------CCHHHHHHHHHHH
Q 004992 216 LEFT--------D----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS----------EDSAIHYEAVGVI 273 (720)
Q Consensus 216 l~~~--------~----~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~----------~~~~v~~~a~~~L 273 (720)
|+++ + .......+.+++.+..-+...+..+.++++...|...|.. .+.-+.......|
T Consensus 729 Lksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkil 808 (2799)
T KOG1788|consen 729 LKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKIL 808 (2799)
T ss_pred HHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHH
Confidence 6552 1 2345566777887776566677778888888888776631 1222222222222
Q ss_pred HHh---h-cCCcchHHH-------------HHHcCCh-----HHHHHhhcc--------CChHHHHHHHHHHHHHh----
Q 004992 274 GNL---V-HSSPNIKKE-------------VLAAGAL-----QPVIGLLSS--------CCSESQREAALLLGQFA---- 319 (720)
Q Consensus 274 ~nL---~-~~~~~~~~~-------------~~~~~~l-----~~L~~ll~~--------~~~~~~~~a~~~L~~l~---- 319 (720)
-.+ + ..++.++.. +...|++ ...+.++.. +.-..-..|+..+..+-
T Consensus 809 FrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednif 888 (2799)
T KOG1788|consen 809 FRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIF 888 (2799)
T ss_pred HHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccccee
Confidence 221 1 112222221 2223311 011111111 11111122333333221
Q ss_pred -----ccC-cchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc---CCC
Q 004992 320 -----ATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD---SKN 390 (720)
Q Consensus 320 -----~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~---~~~ 390 (720)
.+. ......+...|.+..++..+-...++++..-+..+..++. ..+.+...+...|.++.+++.+. +..
T Consensus 889 avntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaR--aspfnaelltS~gcvellleIiypflsgs 966 (2799)
T KOG1788|consen 889 AVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLAR--ASPFNAELLTSAGCVELLLEIIYPFLSGS 966 (2799)
T ss_pred eeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhh--cCCCchhhhhcccHHHHHHHHhhhhhcCC
Confidence 110 1234557788999999999999999999999999999998 46667777777788888777762 334
Q ss_pred hhHHHHHHHHHHhccc
Q 004992 391 GSLQHNAAFALYGLAD 406 (720)
Q Consensus 391 ~~v~~~a~~~L~~l~~ 406 (720)
......+..++..|+.
T Consensus 967 spfLshalkIvemLga 982 (2799)
T KOG1788|consen 967 SPFLSHALKIVEMLGA 982 (2799)
T ss_pred chHhhccHHHHHHHhh
Confidence 4444555555555543
No 267
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.38 E-value=6.4 Score=44.45 Aligned_cols=191 Identities=18% Similarity=0.183 Sum_probs=118.2
Q ss_pred HHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCc--HHHHHh
Q 004992 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI--PPLVEL 215 (720)
Q Consensus 139 ~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~l 215 (720)
+|+++. .+++.+..+.+.+++..+...++.-... ++...++..+.+++...+. +........+ ..+..+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~-------~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~ 565 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNE-------ELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVL 565 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccch-------hHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHH
Confidence 778888 8899999999999999999999977444 8999999999999974322 2211111111 233334
Q ss_pred hcCCC-HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChH
Q 004992 216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (720)
Q Consensus 216 l~~~~-~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~ 294 (720)
+..-+ .+.-..++.+|+.+..+.+. .... ...+.+......++...... .........+.
T Consensus 566 ~~~w~~~ersY~~~siLa~ll~~~~~----~~~~-----------~~r~~~~~~l~e~i~~~~~~----~~~~~~~~~f~ 626 (699)
T KOG3665|consen 566 LNKWDSIERSYNAASILALLLSDSEK----TTEC-----------VFRNSVNELLVEAISRWLTS----EIRVINDRSFF 626 (699)
T ss_pred HhhcchhhHHHHHHHHHHHHHhCCCc----Cccc-----------cchHHHHHHHHHHhhccCcc----ceeehhhhhcc
Confidence 44433 47888888888888863332 1111 11223333334444444221 11112222222
Q ss_pred H-HHHhhc-cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHH
Q 004992 295 P-VIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFA 356 (720)
Q Consensus 295 ~-L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~ 356 (720)
. +..++. +..+..+..|.|++.++...++++...+.+.++++.+...-.. ....++..+...
T Consensus 627 ~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 627 PRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred hhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence 2 444554 3457889999999999998888888888888888888766432 233444444433
No 268
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=89.36 E-value=13 Score=38.01 Aligned_cols=161 Identities=15% Similarity=0.081 Sum_probs=108.9
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhc-cCcchhhHHHhc-CC-hHHHHHHhcC-----CC--------HHHHHHHHHH
Q 004992 293 LQPVIGLLSSCCSESQREAALLLGQFAA-TDSDCKVHIVQR-GA-VRPLIEMLQS-----PD--------VQLREMSAFA 356 (720)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~-~~-~~~L~~ll~~-----~~--------~~v~~~a~~~ 356 (720)
++.+...|......+...++..|..++. ........+... +. .+.+-.++.. .. +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888888899999999987 443555555442 22 2344444421 11 2899999999
Q ss_pred HHHHhhhhcCcchhhhhh-hcCCHHHHHHHhcCCChhHHHHHHHHHHhc-ccCCCchhHHHhhcccccccchhhhhhhhH
Q 004992 357 LGRLAQVITDMHNQAGIA-HNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATK 434 (720)
Q Consensus 357 L~~l~~~~~~~~~~~~l~-~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~ 434 (720)
+..+...+ ++..+..+. ..+.+..+.+-+..+++++....+.+|..- ..++ ....-...
T Consensus 138 ~Lsfl~~~-~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~----------------- 198 (330)
T PF11707_consen 138 WLSFLSSG-DPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKC----------------- 198 (330)
T ss_pred HHHHHccC-CHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhh-----------------
Confidence 88888743 444555554 445677788888888899999999888853 3332 22211111
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhcch----hHHHHHHHHHHhhcCCcc
Q 004992 435 DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEK----GVQRRVALALAHLCSPDD 483 (720)
Q Consensus 435 ~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~----~v~~~a~~~L~~l~~~~~ 483 (720)
..+....+..|..+....++ .++..+-..|..+|.++.
T Consensus 199 -----------~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 199 -----------KLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred -----------hhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 33455677788888877777 888889999999987765
No 269
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=89.25 E-value=0.9 Score=34.86 Aligned_cols=50 Identities=34% Similarity=0.422 Sum_probs=33.3
Q ss_pred ccChhhHHHHHHHHhhhChHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHcC
Q 004992 617 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFH 666 (720)
Q Consensus 617 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i---~~~~~~~~~~~a~~~~ 666 (720)
.++.+.+.+++.+|++++++.|.+.|...+...+ +++..-.++.+...+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t 62 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT 62 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence 3467789999999999999999999998887765 4444444544444433
No 270
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=89.11 E-value=31 Score=35.92 Aligned_cols=306 Identities=14% Similarity=0.077 Sum_probs=157.3
Q ss_pred hhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccc----hH-HhHHHHHHHHHHHHHHccChhhHHHHHhCC---
Q 004992 33 QMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSW----LE-ADRAAAKRATHVLAELAKNEEVVNWIVEGG--- 104 (720)
Q Consensus 33 ~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~----~~-~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g--- 104 (720)
.+..+++... +......+....++.+++.+..++.. .+ .|..+...|++.|+.+..+++....+-..-
T Consensus 15 ~~l~~~l~~~----~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~ 90 (372)
T PF12231_consen 15 MTLNNALKAY----DNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASF 90 (372)
T ss_pred HHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHH
Confidence 4455555553 23334556677777788888877754 11 366788999999999988776655544332
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (720)
.+...+..+.+++.+ ..+....+++|..=- +...+.....+..++..+..-.+.-.. ..+...
T Consensus 91 ~i~~~i~~l~~~~~~----------K~i~~~~l~~ls~Q~----f~~~~~~~~~~~~l~~~l~~i~~~~~s---~si~~e 153 (372)
T PF12231_consen 91 IIDHSIESLQNPNSP----------KSICTHYLWCLSDQK----FSPKIMTSDRVERLLAALHNIKNRFPS---KSIISE 153 (372)
T ss_pred HHHHHHHHHcCCCCC----------HHHHHHHHHHHHcCC----CCCcccchhhHHHHHHHHHHhhccCCc---hhHHHH
Confidence 344455566555442 156666666665532 222344455566666666443321111 177888
Q ss_pred HHHHHHHhhhcCchhhHHHHhc-CCcHHHHHhhcCCCHHHHHHHHHHHHHhcc--CCh-hcHHH---HHhC----C----
Q 004992 185 AADAITNLAHENSSIKTRVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLAF--KND-ENKNQ---IVEC----N---- 249 (720)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~--~~~-~~~~~---i~~~----g---- 249 (720)
.+.++.++....+..- .... -.++.++..+-+....++..|...+..+.. +.. ...+. ..+. +
T Consensus 154 rL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~ 231 (372)
T PF12231_consen 154 RLNIYKRLLSQFPQQM--IKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQ 231 (372)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHH
Confidence 9999999987555431 1112 256777776666666777766555554442 111 11111 1111 1
Q ss_pred -CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhc---cCcch
Q 004992 250 -ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA---TDSDC 325 (720)
Q Consensus 250 -~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~ 325 (720)
+.+.|..++.+.+......-+|...-+..+++....--.-...+...-..++++++.++..|..+-..+.. .++..
T Consensus 232 ~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~ 311 (372)
T PF12231_consen 232 LYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELT 311 (372)
T ss_pred HHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 23335556666222221111222222222222111111122345555556667788888888776655542 11111
Q ss_pred hhHHHhcCChHHHHHHhcC-CCH----HHHHHHHHHHHHHhh
Q 004992 326 KVHIVQRGAVRPLIEMLQS-PDV----QLREMSAFALGRLAQ 362 (720)
Q Consensus 326 ~~~~~~~~~~~~L~~ll~~-~~~----~v~~~a~~~L~~l~~ 362 (720)
....... +..++...++. ... .++..++..++++..
T Consensus 312 ~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 312 SPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred cHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 1112111 12233333332 223 677888888887775
No 271
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.06 E-value=61 Score=39.20 Aligned_cols=174 Identities=14% Similarity=0.046 Sum_probs=96.1
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc-CCCc
Q 004992 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDN 410 (720)
Q Consensus 332 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~-~~~~ 410 (720)
.+++|.|-..|.+.+..+|..|...++.+.. ....+..=........++.-+.+....+|..++....++-. ++..
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~---~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFS---DKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHh---cchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence 3688999999999999999999999999987 44433321112334456666688899999999988888743 3433
Q ss_pred hhHHHhhcccc-cccchhhhhhhhHHHHHHHHHHHHH-hhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCC-----cc
Q 004992 411 VADFIRVGGVQ-KLQDGEFIVQATKDCVAKTLKRLEE-KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-----DD 483 (720)
Q Consensus 411 ~~~l~~~~~v~-~L~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~~ 483 (720)
.......-.+. ...+....................- .+.. ++..+.+-+++..+.||..|..-|..+-.+ ..
T Consensus 335 ~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~ 413 (1266)
T KOG1525|consen 335 AKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSA 413 (1266)
T ss_pred hhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 32222221111 1111111000000000000011111 1122 666677778888999999999888777442 11
Q ss_pred cchhhh-ccCc-HHHHHHhhcCCCchhh
Q 004992 484 QRTIFI-DGGG-LELLLGLLGSTNPKQQ 509 (720)
Q Consensus 484 ~~~~~~-~~~~-~~~L~~ll~~~~~~v~ 509 (720)
+-+... .... -..|+.++...+.+.|
T Consensus 414 ~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 414 GGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred CcccccccccccchhHHhhHhhccccHH
Confidence 111111 1122 3466666666655555
No 272
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.33 E-value=2.1 Score=38.63 Aligned_cols=116 Identities=22% Similarity=0.164 Sum_probs=76.8
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcC--CHHHHHHHhcCC-ChhHHHHHHHHHHhcccCCC
Q 004992 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNG--GLVPLLKLLDSK-NGSLQHNAAFALYGLADNED 409 (720)
Q Consensus 333 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~--~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~ 409 (720)
+....+..+|+++++.-|-.++..+.-.+. ... ...+.+.+ .+..++..++.+ .+.+...++.+|..|.....
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~---~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVE---QCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHH---Hhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456778889999999999999988888887 211 22232322 366788888654 56678889999999876555
Q ss_pred chhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcC
Q 004992 410 NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 480 (720)
Q Consensus 410 ~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 480 (720)
....+.+..+.+.+. .+++.++.++++ +.....++.+|..+..
T Consensus 101 ~~p~l~Rei~tp~l~--------------------------~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 101 GKPTLTREIATPNLP--------------------------KFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CCCchHHHHhhccHH--------------------------HHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 555555544444432 366777777765 4555666666666644
No 273
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=88.31 E-value=1.9 Score=39.86 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=63.9
Q ss_pred hhhHHHHHHcCChHHHHHHHhccCCCcc-chhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHH
Q 004992 147 PEHQQLIVDNGALSHLVNLLKRHMDSNC-SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR 225 (720)
Q Consensus 147 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 225 (720)
...-..+++.||+..|+.+|........ .....+....++.||..+..........+...+++..|...+.+++..++.
T Consensus 97 ~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~ 176 (187)
T PF06371_consen 97 ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRK 176 (187)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence 4556677888999999999975432211 112236778899999999874444455555578899999999999999999
Q ss_pred HHHHHHHHhc
Q 004992 226 AAAGALRTLA 235 (720)
Q Consensus 226 ~a~~~L~~L~ 235 (720)
.++.+|..+|
T Consensus 177 ~~leiL~~lc 186 (187)
T PF06371_consen 177 LALEILAALC 186 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 274
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.22 E-value=0.55 Score=43.88 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc-chhHHH
Q 004992 391 GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQR 469 (720)
Q Consensus 391 ~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-~~~v~~ 469 (720)
-.-|..|+.+|++|+-.+.|..-+...+-..++. .++..|++++... ++-.|+
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE--------------------------~l~~~L~r~l~~~e~~v~RE 191 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLE--------------------------RLFHTLVRLLGMREDQVCRE 191 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHH--------------------------HHHHHHHHHhccccchhHHH
Confidence 3568899999999998888877766665444332 2666778877654 788899
Q ss_pred HHHHHHHhhcCCcc--cchhhhccCcHHHHHHhhcCCCchh
Q 004992 470 RVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQ 508 (720)
Q Consensus 470 ~a~~~L~~l~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~v 508 (720)
.|+..|.+|+...+ .+.+-.+.+.+..|+..+++.....
T Consensus 192 fAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 192 FAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 99999999998877 4556677889999999998765443
No 275
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.22 E-value=4.3 Score=37.40 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCC-----CHHHHHHHHHHHHHhccC-ChhcHHHHHhCCCHHH
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-----DTKVQRAAAGALRTLAFK-NDENKNQIVECNALPT 253 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~ 253 (720)
.-...|+..|..+++ +++.+..+.+..+--.+..+|... -+.+|..++++++.|..+ ++.....+....++|.
T Consensus 115 nRvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 334556677777776 788888787766554555565432 267889999999999973 3445566677889999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 004992 254 LILMLRSEDSAIHYEAVGVIGNLVHSS 280 (720)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~nL~~~~ 280 (720)
+++++..+++--+..++.++..+..++
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999998888777777777777775443
No 276
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.18 E-value=8.3 Score=41.95 Aligned_cols=187 Identities=12% Similarity=0.057 Sum_probs=112.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcc--CChh---cHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchH
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAF--KNDE---NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~--~~~~---~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~ 284 (720)
|.|.+-|+-.|..||.+|+..+.++-- +.+. ..+.+++. -...+.++|.++-+.||..|+.-++.+...--...
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 556667778899999999999988762 2222 22333332 46788999999999999888877766643211111
Q ss_pred HHHHHcCChHHHHHhh-ccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhh
Q 004992 285 KEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (720)
Q Consensus 285 ~~~~~~~~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (720)
...+-..++..+..-+ .+...++|......|..+.. ++.... +++. ++|.+-..|.+++..||.++...|..+-.
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~-~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~- 331 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHP-LLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKA- 331 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cccchh-HHHH-HHHhcchhhhccchhHHHHHHHHHHHHHh-
Confidence 1111112333333333 24456788888888888764 343332 3333 45677777888999999999988877654
Q ss_pred hcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 004992 364 ITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 364 ~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (720)
. ....+.+--..+.++..|...+..+.+..+..|.+.+
T Consensus 332 --v--ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 332 --V--RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred --h--hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 1 1122333333555555555555555555555555443
No 277
>PRK09169 hypothetical protein; Validated
Probab=88.10 E-value=88 Score=39.88 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhh
Q 004992 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK 200 (720)
Q Consensus 133 ~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 200 (720)
-+.++..|..-. .++..+..+-.. -+..+++-|...... +....++..|.......+..+
T Consensus 223 cr~a~~~lA~rL~~~~~l~~~l~~q-~va~~LNAlSKWp~~-------~~c~~aa~~lA~rla~~~~lr 283 (2316)
T PRK09169 223 CRNAAERLAERLADEPGLLQSLRAQ-EVALLLNALSKWPDD-------EACRQAAEALAARLAREPGLR 283 (2316)
T ss_pred HHHHHHHHHHHHhcChHHHHhcCHH-HHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHhcChhhh
Confidence 334444444433 555554433322 244445555444332 344445555544333333333
No 278
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=87.82 E-value=18 Score=37.49 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=84.5
Q ss_pred HHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc------CCCHHHHHH
Q 004992 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE------FTDTKVQRA 226 (720)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~ 226 (720)
+.+.+-...+-.-+..++.. .-+..|+..|..++...+..-..+. ...+..++. ..++.-+..
T Consensus 206 lfEddP~EYIrrd~e~sd~~-------TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~ 274 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSD-------TRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDG 274 (370)
T ss_dssp HHHHSHHHHHHHHSCSS----------SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHH
T ss_pred HHccCHHHHHHhhccccccC-------CcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHH
Confidence 34445555555555432221 6678899999999964332211111 123333332 356788888
Q ss_pred HHHHHHHhccCChh------------cHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChH
Q 004992 227 AAGALRTLAFKNDE------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (720)
Q Consensus 227 a~~~L~~L~~~~~~------------~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~ 294 (720)
|+..+..++..... +...+....++|-|. --.+..+-++..|++.+...-..-+ +. .-.++++
T Consensus 275 Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~---~~-~l~~~~~ 349 (370)
T PF08506_consen 275 ALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP---KE-QLLQIFP 349 (370)
T ss_dssp HHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----HH-HHHHHHH
T ss_pred HHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC---HH-HHHHHHH
Confidence 99999988863321 122233333455554 1124567789999999988854322 22 2235899
Q ss_pred HHHHhhccCChHHHHHHHHHH
Q 004992 295 PVIGLLSSCCSESQREAALLL 315 (720)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L 315 (720)
.++..|.+++.-++..|+.++
T Consensus 350 ~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 350 LLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhCCCCcchhhhhhhhC
Confidence 999999999988888888764
No 279
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.65 E-value=1.3 Score=35.20 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 452 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 452 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.+...+..+.++.+.+|..++..|.++....+ .......+++..+...++++++=|=..|..+|..|+...
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 34566777889999999999999999988777 333334566788888999999999999999999999754
No 280
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=25 Score=38.56 Aligned_cols=173 Identities=14% Similarity=0.106 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhc--cChhhHHH----HHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCch-hhHHH
Q 004992 131 EVEKGSAFALGLLA--VKPEHQQL----IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-IKTRV 203 (720)
Q Consensus 131 ~v~~~a~~~L~~L~--~~~~~~~~----~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~ 203 (720)
.||..|+..+.++. .+|+.... +++ .-...+.++|.++.+ .++..|..-+....+.--+ ....+
T Consensus 189 ~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p--------~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 189 EVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYP--------MVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred hhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCc--------hHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 89999999999998 66665322 222 235678888888877 7888887776665542111 00111
Q ss_pred HhcCCcHHHHHhh-cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 004992 204 RMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (720)
Q Consensus 204 ~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~ 282 (720)
+ ...+..+..-+ .+...+||..+...|-.+.. +|.....+-. ++|.+-..|.+....||..+...|..+-.. .
T Consensus 260 ~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~~le~--~Lpal~~~l~D~se~VRvA~vd~ll~ik~v-r- 333 (1005)
T KOG1949|consen 260 L-IDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHPLLEQ--LLPALRYSLHDNSEKVRVAFVDMLLKIKAV-R- 333 (1005)
T ss_pred H-HHHHHHHHHHhhhccchheehhHhcCcHHHHc-CccchhHHHH--HHHhcchhhhccchhHHHHHHHHHHHHHhh-h-
Confidence 1 12223333222 34557899988888888885 5655444432 577777888888999999988888888321 1
Q ss_pred hHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHh
Q 004992 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (720)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (720)
...+-+---.+.++..|...+..+.+..+..|.+.+
T Consensus 334 -a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 334 -AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred -hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 112222234566677777666666666666666654
No 281
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=87.13 E-value=29 Score=33.34 Aligned_cols=162 Identities=20% Similarity=0.142 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHh--
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-- 257 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~l-- 257 (720)
++....+..|..++..+..+.. -++..+..+...+....+..+.+.+..+...++... +.+..++..
T Consensus 16 ~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~~~~ 84 (234)
T PF12530_consen 16 ELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLLLLI 84 (234)
T ss_pred HHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHHHHH
Confidence 8888999999999975412222 235677777777777776677777777775332221 223333322
Q ss_pred ------hcC--CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhh-ccCChHHHHHHHHHHHHHhccCcchhhH
Q 004992 258 ------LRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVH 328 (720)
Q Consensus 258 ------l~~--~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (720)
..+ ...+.......++..++...++.. ..+++.+..++ +++++..+..++.+|..++.. +....
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~--~vvd~ 157 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEALAPLCEA--EVVDF 157 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH--hhccH
Confidence 111 122444555567888887767633 23678888888 777888888899999999832 11111
Q ss_pred HHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhh
Q 004992 329 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 329 ~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 362 (720)
. .....+..-+.. ..+.+.+..+..+..+..
T Consensus 158 ~---s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~ 189 (234)
T PF12530_consen 158 Y---SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQ 189 (234)
T ss_pred H---HHHHHHHHhcCCccchHHHHHHHHHHHHhcc
Confidence 1 122333333332 455666555555544444
No 282
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.01 E-value=3 Score=33.15 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=54.6
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
+...+..+.++.+.+|.+++..|..+..... .......+++..++..++++++.|=-+|+.+|..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3455666788888999999999999986444 2223335678888899999999999999999999998
No 283
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=86.83 E-value=40 Score=37.63 Aligned_cols=133 Identities=19% Similarity=0.180 Sum_probs=80.6
Q ss_pred CcHHHHHhhcCC----CHHHHHHHHHHHHHhccC----ChhcHHHHHhCCCHHHHHHhhc----CCCHHHHHHHHHHHHH
Q 004992 208 GIPPLVELLEFT----DTKVQRAAAGALRTLAFK----NDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGN 275 (720)
Q Consensus 208 ~i~~L~~ll~~~----~~~v~~~a~~~L~~L~~~----~~~~~~~i~~~g~l~~L~~ll~----~~~~~v~~~a~~~L~n 275 (720)
.+..+..+++++ .+.++..++-+++.+... .+.....+.+ .+++.+...|. ..+.+.+...+.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE-ELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 356777777653 466777777777766641 1111112222 25666665553 3455667778999999
Q ss_pred hhcCCcchHHHHHHcCChHHHHHhhc---cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC--CCHHHH
Q 004992 276 LVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLR 350 (720)
Q Consensus 276 L~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~ 350 (720)
+.. +. .++.+...+. ..+..+|..|+++|..++...+.. +-+.++.++.+ .++++|
T Consensus 473 ~g~--~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 473 AGH--PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred cCC--hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHH
Confidence 942 22 2334444444 224689999999999987533332 34566666654 678899
Q ss_pred HHHHHHHHHH
Q 004992 351 EMSAFALGRL 360 (720)
Q Consensus 351 ~~a~~~L~~l 360 (720)
.+|..+|...
T Consensus 534 iaA~~~lm~t 543 (574)
T smart00638 534 MAAVLVLMET 543 (574)
T ss_pred HHHHHHHHhc
Confidence 8888776643
No 284
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=86.05 E-value=48 Score=34.71 Aligned_cols=134 Identities=12% Similarity=0.101 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHccC----hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 79 AAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 79 ~~~~a~~~L~~l~~~----~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
.|..|+-....++++ ..+++.+.+.-+.+.+-+++.+.+... ..-+.-.+..+..+|.-.|..|+....--
T Consensus 27 e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~-----dcpd~Vy~~i~itvLacFC~~pElAsh~~ 101 (698)
T KOG2611|consen 27 ERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPG-----DCPDDVYLQISITVLACFCRVPELASHEE 101 (698)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCC-----CCcHHHHHHHHHHHHHHHhCChhhccCHH
Confidence 578888888888874 356667888888899999998765421 11122456667778888887777643322
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCC
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 219 (720)
-.+.||.+..++....+.. ......+...+-.+|..++.. +.....++..|+++.+.++-.-+
T Consensus 102 ~v~~IP~llev~~~~~d~d-~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 102 MVSRIPLLLEVMSKGIDTD-YEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred HHHhhhHHHHHHHhcCCCc-hhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCC
Confidence 2356999999998665431 111225788888999999884 66666788899999998766443
No 285
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.98 E-value=35 Score=38.12 Aligned_cols=162 Identities=19% Similarity=0.172 Sum_probs=91.7
Q ss_pred ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhh----hcCchhhHHHHhcCCcHHHHHhhc----CCCHHHHHHHHH
Q 004992 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA----HENSSIKTRVRMEGGIPPLVELLE----FTDTKVQRAAAG 229 (720)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~----~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~ 229 (720)
.+..+..+++.+...... .++..|+-.++.+. ...+... .......++.+...|. ..+...+...+.
T Consensus 394 ~l~~l~~l~~~~~~~~~~----~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 394 ILKALFELAESPEVQKQP----YLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred HHHHHHHHhcCccccccH----HHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 467777787765332211 44455555555444 3222111 1112335566665553 345666778899
Q ss_pred HHHHhccCChhcHHHHHhCCCHHHHHHhhc-C--CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC--C
Q 004992 230 ALRTLAFKNDENKNQIVECNALPTLILMLR-S--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--C 304 (720)
Q Consensus 230 ~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~-~--~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~--~ 304 (720)
+|+|+.. ...++.+...+. + ....+|..|+++|..++...+.. +-+.++.++.+. +
T Consensus 469 aLGN~g~-----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~ 529 (574)
T smart00638 469 ALGNAGH-----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEP 529 (574)
T ss_pred hhhccCC-----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCC
Confidence 9999884 234555555554 2 24689999999999997544432 234566666543 5
Q ss_pred hHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHH
Q 004992 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMS 353 (720)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a 353 (720)
+++|..|..+|... +|.. ..+..+...+.. ++..|....
T Consensus 530 ~EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 530 PEVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred hHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHh
Confidence 78888887777654 1222 134555555543 455555443
No 286
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=85.97 E-value=6 Score=36.51 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=59.4
Q ss_pred hHHHHhcCCcHHHHHhhc---------CCCHHHHHHHHHHHHHhccCChhcHHHHH-hCCCHHHHHHhhcCCCHHHHHHH
Q 004992 200 KTRVRMEGGIPPLVELLE---------FTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEA 269 (720)
Q Consensus 200 ~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~l~~L~~ll~~~~~~v~~~a 269 (720)
-..|++.||+..|+.+|. ..+......++.||..+.. +..+...+. ..+++..++..+.+++..++..+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~ 178 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA 178 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence 345667788888888774 2456788899999999996 556666665 47889999999999999999999
Q ss_pred HHHHHHhh
Q 004992 270 VGVIGNLV 277 (720)
Q Consensus 270 ~~~L~nL~ 277 (720)
+.+|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 287
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.45 E-value=5.4 Score=38.92 Aligned_cols=141 Identities=17% Similarity=0.189 Sum_probs=96.1
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHH
Q 004992 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (720)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~ 288 (720)
+...+..|.+.++.....++..+..|+...++........ ++..+++-+++....|.+.|+.++..+...-......
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4556677788889999999999999997555544444433 6777888888889999999999999997543332222
Q ss_pred HcCChHHHHHh-hc---cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 289 AAGALQPVIGL-LS---SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 289 ~~~~l~~L~~l-l~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
.++.++.. +. .++.-++..|-.+|..+...-.. ..+++.|+..+++..+.++..++.++.+...
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 23333333 32 23345677788888877642111 2356778888888888888888777666555
No 288
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.71 E-value=12 Score=42.25 Aligned_cols=201 Identities=17% Similarity=0.185 Sum_probs=107.6
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccCh-hhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (720)
++..+.+++...... -..+.+.|..+.... ..- ...+..+..+++....... ..++.
T Consensus 396 av~~i~~~I~~~~~~-------------~~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~----~~l~~ 453 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT-------------DDEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNS----PYLRE 453 (618)
T ss_dssp HHHHHHHHHHTT-S--------------HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-----HHHHH
T ss_pred HHHHHHHHHHcCCCC-------------HHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCC----hhHHH
Confidence 566777788775441 123555566655211 221 1235666667664322110 04555
Q ss_pred HHHHHHHHhhhcCchh---------hHHHHhcCCcHHHHHhhc----CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCC
Q 004992 184 RAADAITNLAHENSSI---------KTRVRMEGGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNA 250 (720)
Q Consensus 184 ~a~~~L~~l~~~~~~~---------~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~ 250 (720)
.|+-.++.+....-.. ........+++.+...+. ..+..-+..++.+|+|+.. ...
T Consensus 454 ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~ 522 (618)
T PF01347_consen 454 TALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PES 522 (618)
T ss_dssp HHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGG
T ss_pred HHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chh
Confidence 5555555555311111 011122345666666554 4567888899999999984 236
Q ss_pred HHHHHHhhcCC---CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC--ChHHHHHHHHHHHHHhccCcch
Q 004992 251 LPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDC 325 (720)
Q Consensus 251 l~~L~~ll~~~---~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~ 325 (720)
++.+...+.+. ...+|..|++++..++...+.. +.+.++.++.+. +.++|..|..+|... +|..
T Consensus 523 i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~ 591 (618)
T PF01347_consen 523 IPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP 591 (618)
T ss_dssp HHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H
T ss_pred hHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH
Confidence 88888888776 5689999999999886554432 235566776654 577888887766653 1222
Q ss_pred hhHHHhcCChHHHHHHhcC-CCHHHHHHHHHH
Q 004992 326 KVHIVQRGAVRPLIEMLQS-PDVQLREMSAFA 356 (720)
Q Consensus 326 ~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~ 356 (720)
..+..+...+.. ++..|.......
T Consensus 592 -------~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 592 -------SVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp -------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred -------HHHHHHHHHHhhCchHHHHHHHHHh
Confidence 134556666644 556665554433
No 289
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=83.94 E-value=28 Score=31.79 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhhhhcCcch---hhhhhhc------CCHHHHHH-HhcCCChhHHHHHHHHHHhcccCCCchhHHHhh
Q 004992 348 QLREMSAFALGRLAQVITDMHN---QAGIAHN------GGLVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 417 (720)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~~~~---~~~l~~~------~~i~~l~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~ 417 (720)
++|..|+.+|..++........ ...+.-. ..-+.|+. ++.++++.+|..|+.+|..|-... +..+..+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs--k~~L~~A 78 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS--KPFLAQA 78 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc--HHHHHHH
Confidence 3688889999888882111111 1112222 23444555 448899999999999999997654 2333322
Q ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc-chhHHHHHHHHHHhhcCCcccchhhhccCcH--
Q 004992 418 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIFIDGGGL-- 494 (720)
Q Consensus 418 ~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-- 494 (720)
.--. -....|..-+ .-+... -..+-..|+..+..+ ++.+....+++|..+.......+. ..|.+
T Consensus 79 e~~~-~~~~sFtslS--~tLa~~--------i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~ 145 (182)
T PF13251_consen 79 EESK-GPSGSFTSLS--STLASM--------IMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTE 145 (182)
T ss_pred HhcC-CCCCCcccHH--HHHHHH--------HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHH
Confidence 1111 0001111110 001111 112334455555544 777888899999999776654433 33444
Q ss_pred --HHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 495 --ELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 495 --~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
..+..++.+.|++++..+..++..+..-
T Consensus 146 ~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 146 VVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 4555678889999999999999988854
No 290
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.77 E-value=15 Score=41.60 Aligned_cols=197 Identities=20% Similarity=0.137 Sum_probs=101.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhcc----CChHHHHHHHHHHHHHhcc---C
Q 004992 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLGQFAAT---D 322 (720)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~~~~~a~~~L~~l~~~---~ 322 (720)
.+..+..++.+....-. .+...|..+......-... .+..+..+++. .++.++..|+.+++.+... .
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 35566666666432221 2334444443222111122 34555566553 3456777777777766531 1
Q ss_pred c------chhhHHHhcCChHHHHHHhc----CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCC---
Q 004992 323 S------DCKVHIVQRGAVRPLIEMLQ----SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSK--- 389 (720)
Q Consensus 323 ~------~~~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~--- 389 (720)
. ..........+++.+...+. ..+..-+..++.+|+|+.. ...++.+...+...
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------------~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------------PESIPVLLPYIEGKEEV 536 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------GGGHHHHHTTSTTSS-S
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------------chhhHHHHhHhhhcccc
Confidence 0 01111222345666666654 4677888999999999986 23566777777544
Q ss_pred ChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc--chhH
Q 004992 390 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGV 467 (720)
Q Consensus 390 ~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~--~~~v 467 (720)
...+|..|+++|..++..... .+.+.++.++.+. ++++
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~----------------------------------------~v~~~l~~I~~n~~e~~Ev 576 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPE----------------------------------------KVREILLPIFMNTTEDPEV 576 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HH----------------------------------------HHHHHHHHHHH-TTS-HHH
T ss_pred chHHHHHHHHHHHHHhhcCcH----------------------------------------HHHHHHHHHhcCCCCChhH
Confidence 678999999999988543221 2444566666653 6789
Q ss_pred HHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcC-CCchhhhhHHH
Q 004992 468 QRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAV 514 (720)
Q Consensus 468 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~ 514 (720)
|.+|..+|...-.. ...+..+...+.. ++..|..+...
T Consensus 577 RiaA~~~lm~~~P~---------~~~l~~i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 577 RIAAYLILMRCNPS---------PSVLQRIAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp HHHHHHHHHHT------------HHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---------HHHHHHHHHHHhhCchHHHHHHHHH
Confidence 99888777553121 1224555555543 55555544433
No 291
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.56 E-value=2.5 Score=39.68 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHccChhhHHHHHhCCCh-------HHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChh-h
Q 004992 79 AAKRATHVLAELAKNEEVVNWIVEGGAV-------PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-H 149 (720)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i-------~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~-~ 149 (720)
-|..|+++|+.++-.+.+.+.+...+-. ..|++++..... +-.|+.|.-+|.+|+ .+.. +
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~-----------~v~REfAvvlL~~La~~~~~~~ 208 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMRED-----------QVCREFAVVLLSNLAQGDEAAA 208 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHhcccHHHH
Confidence 3889999999999877777777766543 344555544332 389999999999999 4444 4
Q ss_pred HHHHHHcCChHHHHHHHhccCC
Q 004992 150 QQLIVDNGALSHLVNLLKRHMD 171 (720)
Q Consensus 150 ~~~~~~~~~l~~L~~lL~~~~~ 171 (720)
+....+.+.|..|+.++++...
T Consensus 209 r~iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 209 RAIAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHhhchHHHHHHHHHHHHH
Confidence 4556677999999999987644
No 292
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=82.39 E-value=10 Score=33.84 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=79.3
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
..|.+++.|.+.++.. ++..+|.+++++++.+.. ||...+.+... .+.- .-..... ......
T Consensus 7 ~yP~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~--~~~~~~~------------~~~~~~ 69 (160)
T PF11865_consen 7 DYPELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKS--LDSK--SSENSND------------ESTDIS 69 (160)
T ss_pred HhHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhccccc--CCcc--ccccccc------------cchhhH
Confidence 4566677777666655 457799999999999877 65433322211 1100 0000000 111111
Q ss_pred HHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHh
Q 004992 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (720)
Q Consensus 137 ~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (720)
. ...+.. ..++.-.. -++..|+..|+++.-. .-...++.++.++..... .+-.-.-..++|.++..
T Consensus 70 l-~~~~~~~~~ee~y~~----vvi~~L~~iL~D~sLs-------~~h~~vv~ai~~If~~l~-~~cv~~L~~viP~~l~~ 136 (160)
T PF11865_consen 70 L-PMMGISPSSEEYYPT----VVINALMRILRDPSLS-------SHHTAVVQAIMYIFKSLG-LKCVPYLPQVIPIFLRV 136 (160)
T ss_pred H-hhccCCCchHHHHHH----HHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHhcC-cCchhHHHHHhHHHHHH
Confidence 1 111221 22333333 3578888888877654 334456666666553211 11122223577888888
Q ss_pred hcCCCHHHHHHHHHHHHHhc
Q 004992 216 LEFTDTKVQRAAAGALRTLA 235 (720)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~ 235 (720)
++..+...++....-|..|.
T Consensus 137 i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 137 IRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHhCCHHHHHHHHHHHHHHH
Confidence 88777788887776666654
No 293
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=81.68 E-value=11 Score=33.72 Aligned_cols=142 Identities=15% Similarity=0.036 Sum_probs=78.7
Q ss_pred CHHHHHHHhc-CCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHH-HHHHHH-HHHHHhhhhhhHH
Q 004992 378 GLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD-CVAKTL-KRLEEKIHGRVLN 454 (720)
Q Consensus 378 ~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~-~~~~~~-~~l~~~~~~~~~~ 454 (720)
.++.|.++++ +.++.+|..++++|+.|..-++.+.+....+.-..-.. +........ ...... ....+......+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~ 89 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSE-NSNDESTDISLPMMGISPSSEEYYPTVVIN 89 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccc-cccccchhhHHhhccCCCchHHHHHHHHHH
Confidence 4566777774 45799999999999999553333333222111000000 000000000 000000 0223444555777
Q ss_pred HHHHHHHhcch-hHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHH
Q 004992 455 HLLYLMRVAEK-GVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 520 (720)
Q Consensus 455 ~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~ 520 (720)
.|+..++++.- .-...++.++.++......+..-.-..++|.++..++..++..++.-..-|+.|.
T Consensus 90 ~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 90 ALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88888887743 3344677777777644332223344567899999999877788888777776665
No 294
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=81.48 E-value=83 Score=33.96 Aligned_cols=274 Identities=12% Similarity=0.096 Sum_probs=136.5
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhH-HHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
.++.+...-...+.. +...++|..+...+..+......+ .... ..+...+.....+ +.-..-
T Consensus 25 ~i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~~I~~~~~~-----------~d~~~~ 87 (464)
T PF11864_consen 25 SIEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFRDISDPSND-----------DDFDLR 87 (464)
T ss_pred HHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHHHHhcCCCc-----------hhHHHH
Confidence 344444443333332 334568999999998887743221 1111 1223333333221 233355
Q ss_pred HHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCC----------------Cccc---hhhhHHHHHHHHHHHHhhhcC
Q 004992 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMD----------------SNCS---RAVNSVIRRAADAITNLAHEN 196 (720)
Q Consensus 137 ~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~----------------~~~~---~~~~~v~~~a~~~L~~l~~~~ 196 (720)
+.+|..|+ ++.+. ...+.+..+.+...|..... .... ..........+..+.++.+.+
T Consensus 88 l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn 165 (464)
T PF11864_consen 88 LEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFN 165 (464)
T ss_pred HHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcC
Confidence 66667777 44444 22456777777777753220 0000 001123334444555555433
Q ss_pred chhhHHHHhcCCcHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004992 197 SSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN 275 (720)
Q Consensus 197 ~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~n 275 (720)
...-..-.-.+.+..++.++... ++.....++.++-.+.....-....+. .++..|...... .+....+..++.|
T Consensus 166 ~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~~--~~l~~~~w~~m~n 241 (464)
T PF11864_consen 166 FNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS--PCIEVLCSIVNS--VSLCKPSWRTMRN 241 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhcc--cccchhHHHHHHH
Confidence 32211112234455555554332 344445555555554431111111111 123333333222 2667778889999
Q ss_pred hhcCCcchHHHHHHcCChHHHHHhhcc------CChHHHHHHHHHHHHHhccCcchhhHHHh-c--CChHHHHHHhcCCC
Q 004992 276 LVHSSPNIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCKVHIVQ-R--GAVRPLIEMLQSPD 346 (720)
Q Consensus 276 L~~~~~~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~--~~~~~L~~ll~~~~ 346 (720)
|+...-. . ..+..|..+|.+ .+..+.+-|+..+..+..+..+.+..-+. . -+++.+...++.++
T Consensus 242 L~~S~~g--~-----~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~ 314 (464)
T PF11864_consen 242 LLKSHLG--H-----SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNS 314 (464)
T ss_pred HHcCccH--H-----HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCC
Confidence 9754322 2 245677777732 23556677888888877655333322222 2 26788888888777
Q ss_pred HHHHHHHHHHHHHHh
Q 004992 347 VQLREMSAFALGRLA 361 (720)
Q Consensus 347 ~~v~~~a~~~L~~l~ 361 (720)
+.+-...+..+.++.
T Consensus 315 ~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 315 PRVDYEILLLINRLL 329 (464)
T ss_pred CeehHHHHHHHHHHH
Confidence 777777777777766
No 295
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.48 E-value=56 Score=31.97 Aligned_cols=175 Identities=22% Similarity=0.180 Sum_probs=103.8
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHHHhhhh-----cCcchhhhhhhcCCHHHHHHHhcCCC----hhHHHHHHHHHHh
Q 004992 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQVI-----TDMHNQAGIAHNGGLVPLLKLLDSKN----GSLQHNAAFALYG 403 (720)
Q Consensus 333 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~l~~~~~i~~l~~ll~~~~----~~v~~~a~~~L~~ 403 (720)
|+-+.+++-+.+ +...+.++..|..++... +..+.+-.+.--..+|.++.-+.+++ ......++..|..
T Consensus 64 Glq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 444555555554 445567778888887621 11112222222234666666666555 2345567788888
Q ss_pred cccC--CCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhh----hhhhHHHHHHHHHhcchhHHHHHHHHHHh
Q 004992 404 LADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI----HGRVLNHLLYLMRVAEKGVQRRVALALAH 477 (720)
Q Consensus 404 l~~~--~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 477 (720)
++.. .++...+...-. +.. .....+++...++.+.+.+ ...++..|+.++..+.+.+|.....+|..
T Consensus 142 ~a~~~~~~~La~il~~ya-----~~~--fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ 214 (262)
T PF14225_consen 142 VAEAQGLPNLARILSSYA-----KGR--FRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKV 214 (262)
T ss_pred HHHhCCCccHHHHHHHHH-----hcC--CCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8753 223333332111 111 1344555666666665543 56788889999999999999999999999
Q ss_pred hcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHH
Q 004992 478 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 520 (720)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~ 520 (720)
+....+.+.- ...+.+.+|.++++.+.-. .|...|-...
T Consensus 215 ll~~~d~~~~-~~~dlispllrlL~t~~~~---eAL~VLd~~v 253 (262)
T PF14225_consen 215 LLPHVDMRSP-HGADLISPLLRLLQTDLWM---EALEVLDEIV 253 (262)
T ss_pred HhccccCCCC-cchHHHHHHHHHhCCccHH---HHHHHHHHHH
Confidence 9887774433 4556788888888776533 4444444443
No 296
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.32 E-value=43 Score=39.13 Aligned_cols=140 Identities=18% Similarity=0.193 Sum_probs=97.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcch-hhHHHhc
Q 004992 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQR 332 (720)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~ 332 (720)
+++--++-.+++|..|+..|+-.....| ..+.+...+..+-..|.+.+..||..++.+|..|...+... ....+..
T Consensus 292 FVHRYRDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFts 368 (1048)
T KOG2011|consen 292 FVHRYRDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTS 368 (1048)
T ss_pred eeeecccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3444467789999999988888876656 45677788899888999999999999999999998653322 2233444
Q ss_pred CChHHHHHHh-cCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhc
Q 004992 333 GAVRPLIEML-QSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 404 (720)
Q Consensus 333 ~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l 404 (720)
.+=..++++. ++-+..|+..++..+..+.. ..+....-+..+..++.+.++.++..|...+..=
T Consensus 369 RFK~RIVeMadrd~~~~Vrav~L~~~~~~~~--------~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 369 RFKDRIVEMADRDRNVSVRAVGLVLCLLLSS--------SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhc--------ccccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 5667778877 44556666555554444333 1233334467788888888888888777666543
No 297
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=78.99 E-value=26 Score=34.52 Aligned_cols=170 Identities=20% Similarity=0.167 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhccCChhcHHHHHhCC--CHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCCcchHHHHHHcC--Ch-
Q 004992 223 VQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--AL- 293 (720)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~i~~~g--~l~~L~~ll~~----~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~--~l- 293 (720)
-+..++..++-++. ++.....+...+ +...+..++.. ..+..+..++++++|+... +..+..+.... .+
T Consensus 79 ~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 79 SRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PPGRQLLLSHFDSSIL 156 (268)
T ss_dssp C-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHHTCHH
T ss_pred cchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-CccHHHHHhcccchHH
Confidence 35566676766665 444444443322 23444444432 4567888999999999765 44444444322 22
Q ss_pred HHHHHhhccC---ChHHHHHHHHHHHHHhccCcchh-hHHHhcCChHHHHHHh-cC-CCHHHHHHHHHHHHHHhhhhcCc
Q 004992 294 QPVIGLLSSC---CSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEML-QS-PDVQLREMSAFALGRLAQVITDM 367 (720)
Q Consensus 294 ~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll-~~-~~~~v~~~a~~~L~~l~~~~~~~ 367 (720)
..+..+..+. +..++..++..+.|++....... ..-....++..+.+.+ .. .++++...++-+|+++.. .+
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~---~~ 233 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLS---SS 233 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC---CS
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc---cC
Confidence 2222222222 57788899999999974211111 0011112355566633 23 689999999999999997 44
Q ss_pred chhhhhhhcCCHHH-HHHHh-cCCChhHHHHH
Q 004992 368 HNQAGIAHNGGLVP-LLKLL-DSKNGSLQHNA 397 (720)
Q Consensus 368 ~~~~~l~~~~~i~~-l~~ll-~~~~~~v~~~a 397 (720)
.........-.+.. +.... ...++.++..+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 234 DSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred hhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 44444444322333 22222 33455555443
No 298
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=78.59 E-value=41 Score=31.02 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=56.2
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~ 283 (720)
.++.+++++-+++..++..|+.++..+....-.+ -...+|.++.+..|+++.++..|...+..+....+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 4677888888999999999999998877522111 1236999999999999999999999999997655544
No 299
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=78.46 E-value=17 Score=35.83 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHcC--ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcC--
Q 004992 132 VEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG-- 207 (720)
Q Consensus 132 v~~~a~~~L~~L~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-- 207 (720)
-+.-++..+.-++-++.....+...+ ....+..++....+... ...+..+++++.|+.. ++..+..+....
T Consensus 79 ~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~~ 153 (268)
T PF08324_consen 79 SRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSP----PANQMLALRLLANLFS-HPPGRQLLLSHFDS 153 (268)
T ss_dssp C-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSS----HHHHHHHHHHHHHHTT-SCCCHHHHHCTHHT
T ss_pred cchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCc----HHHHHHHHHHHHHhhC-CCccHHHHHhcccc
Confidence 35567777766666666655544332 24555566655432211 1777889999999887 455555554332
Q ss_pred CcHHHHHhhcCC----CHHHHHHHHHHHHHhccCChhcH-HHHHhCCCHHHHHHh-hcC-CCHHHHHHHHHHHHHhhcCC
Q 004992 208 GIPPLVELLEFT----DTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILM-LRS-EDSAIHYEAVGVIGNLVHSS 280 (720)
Q Consensus 208 ~i~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~-~~i~~~g~l~~L~~l-l~~-~~~~v~~~a~~~L~nL~~~~ 280 (720)
.+...+..+... +..++.+++..+.|++......+ ..-....++..++.. ... .++++...++-+++++....
T Consensus 154 ~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~ 233 (268)
T PF08324_consen 154 SILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSS 233 (268)
T ss_dssp CHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC
Confidence 232333333333 68899999999999984111111 000011135555553 333 58899999999999998654
Q ss_pred cch
Q 004992 281 PNI 283 (720)
Q Consensus 281 ~~~ 283 (720)
+..
T Consensus 234 ~~~ 236 (268)
T PF08324_consen 234 DSA 236 (268)
T ss_dssp HHH
T ss_pred hhH
Confidence 443
No 300
>PRK09169 hypothetical protein; Validated
Probab=78.00 E-value=2.2e+02 Score=36.71 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=46.7
Q ss_pred HHHHHHHHH-hccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHH
Q 004992 134 KGSAFALGL-LAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (720)
Q Consensus 134 ~~a~~~L~~-L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (720)
..++..|.. |+..+..+..+-.. .+..+++-|....+. ...+.++..|..-....+.....+.. --+..+
T Consensus 182 ~~aa~~lA~~la~~~~l~~al~~q-~va~~lnalSKwp~~-------~~cr~a~~~lA~rL~~~~~l~~~l~~-q~va~~ 252 (2316)
T PRK09169 182 QTAAEQLADRLASDSRLLQAMDAQ-EVANALNALSKWPDS-------PRCRNAAERLAERLADEPGLLQSLRA-QEVALL 252 (2316)
T ss_pred HHHHHHHHHHhccCHHHHHhcchH-HHHHHHHHHhcCCCc-------HHHHHHHHHHHHHHhcChHHHHhcCH-HHHHHH
Confidence 344444444 44777776654443 345555555554443 55566666666655544443332222 222333
Q ss_pred HH-hhcCCCHHHHHHHHHHHHHhccCChhcHH
Q 004992 213 VE-LLEFTDTKVQRAAAGALRTLAFKNDENKN 243 (720)
Q Consensus 213 ~~-ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 243 (720)
++ +-+-++...-..+...|.......+..+.
T Consensus 253 LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~ 284 (2316)
T PRK09169 253 LNALSKWPDDEACRQAAEALAARLAREPGLRL 284 (2316)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhcChhhhh
Confidence 33 33444433333444444433323444433
No 301
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=77.31 E-value=89 Score=31.91 Aligned_cols=160 Identities=13% Similarity=0.151 Sum_probs=112.9
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhcc-CChhcHHHHHhC-C-CHHHHHHhhcCC-----C--------HHHHHHHHHH
Q 004992 209 IPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVEC-N-ALPTLILMLRSE-----D--------SAIHYEAVGV 272 (720)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~i~~~-g-~l~~L~~ll~~~-----~--------~~v~~~a~~~ 272 (720)
++.+.+.|......+...+++.|..++. +.......+... + -.+.+.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888888888888899999999997 555555555542 2 245566665321 1 2888888877
Q ss_pred HHHhh-cCCcchHHHHHH-cCChHHHHHhhccCChHHHHHHHHHHHHHhccCc----chhhHHHhcCChHHHHHHhcCCC
Q 004992 273 IGNLV-HSSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDS----DCKVHIVQRGAVRPLIEMLQSPD 346 (720)
Q Consensus 273 L~nL~-~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~~~~~L~~ll~~~~ 346 (720)
+..+. ..++..+..++. .+.+..+..-|..+++++....+.++..-.-.++ ..+..++....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 76665 445556666665 4567788888888888998898888884333333 33445677778888988777666
Q ss_pred H----HHHHHHHHHHHHHhhhhcCcchhh
Q 004992 347 V----QLREMSAFALGRLAQVITDMHNQA 371 (720)
Q Consensus 347 ~----~v~~~a~~~L~~l~~~~~~~~~~~ 371 (720)
+ .+++.+-..|..+|. ++.+.-
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT---~p~~Gv 243 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCT---DPKHGV 243 (330)
T ss_pred CcccchHHHHHHHHHHHHhc---CCCccc
Confidence 6 899999999999998 554433
No 302
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=77.10 E-value=2.2e+02 Score=36.32 Aligned_cols=132 Identities=10% Similarity=0.108 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhc-c---ChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhc
Q 004992 131 EVEKGSAFALGLLA-V---KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (720)
Q Consensus 131 ~v~~~a~~~L~~L~-~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (720)
.+...|+..|..++ . .++....-....++.++..++...... ++++..+.|+.++..... ..+ .
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~-------eVrE~ILeCv~qmI~s~~---~nI-k- 1219 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAV-------EIRELIIRCVSQMVLSRV---NNV-K- 1219 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHHHH---hhh-h-
Confidence 67888888888888 2 222111122345778888888866554 999999999999886322 122 2
Q ss_pred CCcHHHHHhhc----CCCHHHHHHHHHHHHHhccCChhc-----HHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 004992 207 GGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDEN-----KNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNL 276 (720)
Q Consensus 207 ~~i~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~~~-----~~~i~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~nL 276 (720)
.|.+.++.++. +..+.+...|-.++..+..+.-.. ...+.+ ++..|..+.+.. +.++-..|+..|+++
T Consensus 1220 SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1220 SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 36677777765 456788888888888776421110 112222 355555555443 356666677777755
No 303
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=76.73 E-value=42 Score=30.63 Aligned_cols=136 Identities=21% Similarity=0.212 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHccC-h-----hhHHHHHhCC------ChHHHH-HhhcCCCCcccccCCCcchHHHHHHHHHHHHHhcc
Q 004992 79 AAKRATHVLAELAKN-E-----EVVNWIVEGG------AVPALV-KHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV 145 (720)
Q Consensus 79 ~~~~a~~~L~~l~~~-~-----~~~~~~~~~g------~i~~L~-~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~ 145 (720)
+|..|+..|..+++. + .+...+.-.+ .-+.|+ -++.+++. .+|..|+.++..|-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~------------kvR~aA~~~l~~lL~ 69 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSP------------KVRAAAASALAALLE 69 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCch------------hHHHHHHHHHHHHHH
Confidence 466777777777664 1 1222222111 333333 45556655 899999999999983
Q ss_pred C-hhhHHHHHHc-------------------CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHh
Q 004992 146 K-PEHQQLIVDN-------------------GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (720)
Q Consensus 146 ~-~~~~~~~~~~-------------------~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 205 (720)
+ ...-....+. ..-..|+..|...... .+....++++..+....+..|- .
T Consensus 70 gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~-------~~l~q~lK~la~Lv~~tPY~rL---~ 139 (182)
T PF13251_consen 70 GSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSP-------PVLTQLLKCLAVLVQATPYHRL---P 139 (182)
T ss_pred ccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccc-------HHHHHHHHHHHHHHccCChhhc---C
Confidence 3 2221111111 1223444555544443 7788899999999987776553 2
Q ss_pred cCCcHHH----HHhhcCCCHHHHHHHHHHHHHhcc
Q 004992 206 EGGIPPL----VELLEFTDTKVQRAAAGALRTLAF 236 (720)
Q Consensus 206 ~~~i~~L----~~ll~~~~~~v~~~a~~~L~~L~~ 236 (720)
.|.++.+ ..++.+.|.+++..++.++..+..
T Consensus 140 ~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 140 PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 3555444 456678889999999999988875
No 304
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.49 E-value=1.7e+02 Score=36.70 Aligned_cols=263 Identities=17% Similarity=0.093 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHH------HHHHhhhcCc--hh
Q 004992 130 HEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD------AITNLAHENS--SI 199 (720)
Q Consensus 130 ~~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~------~L~~l~~~~~--~~ 199 (720)
-.+...+....+.++ -++..+..+.+ .+...++..-.. + ...|+.++.. ++..++.... ..
T Consensus 798 ls~Idta~~lfg~vfp~v~~k~~~~ile-----~~~esi~~sk~~-r---~qsV~~~a~t~~al~s~lk~l~e~~~~~~l 868 (2067)
T KOG1822|consen 798 LSLIDTAVSLFGSVFPHVNNKIRLSILE-----HFPESIKQSKSA-R---QQSVQVNAVTWQALLSALKYLAEFKGATSL 868 (2067)
T ss_pred hHHHHHHHHHHHHhccCccHHHHHHHHH-----HHHHHhhhhccc-h---hHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 367777888888888 33344433332 233333222111 0 0144444443 3344443222 11
Q ss_pred hHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 004992 200 KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 200 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~v~~~a~~~L~nL~~ 278 (720)
-...+..-....++..+..+++..+..+..+++.++... +...++. +....+++-+.+. ++-.|.--.-+++.+-.
T Consensus 869 g~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v--~~~~f~a-~~aq~~fdklas~~d~i~R~ghslalg~lhk 945 (2067)
T KOG1822|consen 869 GPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVV--GSAPFVA-SLAQNSFDKLASARDPITRTGHSLALGCLHK 945 (2067)
T ss_pred CHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhc--cccchHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 111222223445566677788999999999999999622 2222221 2355555555554 44444433444555543
Q ss_pred CCcchHHHHHHcCChHHHHHhhccCC-hHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC---CCHHHHHHHH
Q 004992 279 SSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS---PDVQLREMSA 354 (720)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~---~~~~v~~~a~ 354 (720)
+.......-.....+..++.+.+++. +.++..++.++.-+..........++ +-.+..+..++.. ...++...--
T Consensus 946 yvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~v-e~tlsl~~~lLls~p~~~~ev~q~~~ 1024 (2067)
T KOG1822|consen 946 YVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLV-EPTLSLCLKLLLSVPTSHVEVHQCYN 1024 (2067)
T ss_pred hccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhH-HHHHHHHHHHcCCCCcchhhhhhhhc
Confidence 33322222222345667888887775 58999999999988753323222222 2234444555433 2234444333
Q ss_pred HHHH------HHhhhhcCcchhhhh-------hhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 355 FALG------RLAQVITDMHNQAGI-------AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 355 ~~L~------~l~~~~~~~~~~~~l-------~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
+++. ++.... +++-+... ...-.+....-++.++++.++..+..++.++..
T Consensus 1025 R~~~~~~~~~alittl-gpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhl 1088 (2067)
T KOG1822|consen 1025 RCFNGDDDEDALITTL-GPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHL 1088 (2067)
T ss_pred cccccchhHHHHHHhc-ccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHh
Confidence 3333 333311 11111111 111112222223355677888888888887743
No 305
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=75.91 E-value=24 Score=35.11 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=50.1
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcH-HHHHhCCCHHHHHHhhc------------CCCHHHHHHHHHHH
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLR------------SEDSAIHYEAVGVI 273 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~i~~~g~l~~L~~ll~------------~~~~~v~~~a~~~L 273 (720)
-++|.++.++.+.++.++..++.+|..+....+... ..+.+.|..+.+-..+. +++..+...+..++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 367999999999999999999999999996332222 23667887766655432 23445666677777
Q ss_pred HHhh
Q 004992 274 GNLV 277 (720)
Q Consensus 274 ~nL~ 277 (720)
..|.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 306
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=75.22 E-value=12 Score=42.43 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhc
Q 004992 128 FEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (720)
Q Consensus 128 ~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (720)
+.+.++.++.-+|+++| .+.+..+. .+|.|++-|.-+... .++.+.+-++..+|... .+.-.
T Consensus 943 ~~~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~-------aiRnNiV~am~D~C~~Y-----Tam~d 1005 (1529)
T KOG0413|consen 943 FSDKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAH-------AIRNNIVLAMGDICSSY-----TAMTD 1005 (1529)
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHH-------HHhcceeeeehhhHHHH-----HHHHH
Confidence 45689999999999999 66665433 579999988876554 67777777777777632 23345
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHh-CC-CHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CN-ALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~-~g-~l~~L~~ll~~~~~~v~~~a~~~L~nL~~ 278 (720)
..+|.+..-|.++++-||+.+.-.|.+|.. . .++. .| ++-.++--+-+.+++++..+=..++.+..
T Consensus 1006 ~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq-~-----~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1006 RYIPMIAASLCDPSVIVRRQTIILLARLLQ-F-----GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred HhhHHHHHHhcCchHHHHHHHHHHHHHHHh-h-----hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999985 1 1222 11 23344444457788898888888877753
No 307
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=74.99 E-value=27 Score=28.09 Aligned_cols=69 Identities=23% Similarity=0.175 Sum_probs=54.4
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 004992 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 402 (720)
Q Consensus 331 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~ 402 (720)
...++..|+.|+..++....+.++..+..++. .+.....+.+-|+...+.++-...++..+..+-.++.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~---~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK---SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh---CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 45678899999999888899999999999998 7777788888888888777766666766665555443
No 308
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=74.32 E-value=2.3 Score=41.93 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=38.5
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCCh
Q 004992 649 DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRP 689 (720)
Q Consensus 649 ~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~ 689 (720)
.++++|++.++.-++-...+.|.+.|+.|+..|+.+|+.++
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~ 111 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASP 111 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCC
Confidence 48999999999999999999999999999999999998865
No 309
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=74.27 E-value=66 Score=29.65 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=82.6
Q ss_pred hHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-c---ChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHH
Q 004992 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V---KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (720)
Q Consensus 106 i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v 181 (720)
++.++++.-+++. .++..|+.++.-+. . +|. ..+|.++.+..++++ .+
T Consensus 10 l~~Il~~~~~~~~------------~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~--------~i 61 (187)
T PF12830_consen 10 LKNILELCLSSDD------------SVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNP--------SI 61 (187)
T ss_pred HHHHHHHHhCCCH------------HHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCCh--------HH
Confidence 4556666666666 89999999998877 2 232 258999999888776 99
Q ss_pred HHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh---cCC-CHHH---HHHHHHHHHHhccCChhcHHHHHhCCCHHHH
Q 004992 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL---EFT-DTKV---QRAAAGALRTLAFKNDENKNQIVECNALPTL 254 (720)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~-~~~v---~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L 254 (720)
+..|...+..+....+..-..-... ++..-..+- ..+ .... ....+.-+..+..++...+..+.. .+
T Consensus 62 r~~A~~~l~~l~eK~~s~v~~~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l 135 (187)
T PF12830_consen 62 RSRAYQLLKELHEKHESLVESRYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SL 135 (187)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HH
Confidence 9999999999997666543222222 233332222 111 1111 455666677776555555555543 34
Q ss_pred HHhhcCC--------CHHHHHHHHHHHHHhhc
Q 004992 255 ILMLRSE--------DSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 255 ~~ll~~~--------~~~v~~~a~~~L~nL~~ 278 (720)
++.+... .+.-......+..||+.
T Consensus 136 ~k~f~~~~~~~~~~~~~~~l~~~~Fla~nLA~ 167 (187)
T PF12830_consen 136 LKQFDFDLTKLSSESSPSDLDFLLFLAENLAT 167 (187)
T ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHhc
Confidence 4444322 23334445556666653
No 310
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=72.59 E-value=1.3e+02 Score=31.65 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=91.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc---hHHHHHHcCChHHHHHhhccCC------hHH-HHHHHHHHHHHhc
Q 004992 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGLLSSCC------SES-QREAALLLGQFAA 320 (720)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~---~~~~~~~~~~l~~L~~ll~~~~------~~~-~~~a~~~L~~l~~ 320 (720)
...+..+++..+.+-+-.++-.+..++...+- .++.+.++-+.+.+-.++.+.+ +.+ +.-+..+|..+|+
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 34466777777777888888888888755432 3455677778888888886432 334 3344556666665
Q ss_pred cCcchh--hHHHhcCChHHHHHHhcC-CCHH------HHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCCh
Q 004992 321 TDSDCK--VHIVQRGAVRPLIEMLQS-PDVQ------LREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNG 391 (720)
Q Consensus 321 ~~~~~~--~~~~~~~~~~~L~~ll~~-~~~~------v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~ 391 (720)
.++.. ..++ +-+|.|...+.. .+++ +.+.+-.+|..++. .+.....+...|+++.+.++-.-++.
T Consensus 93 -~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~---~e~G~~~Lia~G~~~~~~Q~y~~~~~ 166 (698)
T KOG2611|consen 93 -VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT---AEAGLMTLIASGGLRVIAQMYELPDG 166 (698)
T ss_pred -ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc---CCchhHHHHhcCchHHHHHHHhCCCC
Confidence 33332 2233 358999998854 3333 77888889998888 77778889999999999987754444
Q ss_pred hH
Q 004992 392 SL 393 (720)
Q Consensus 392 ~v 393 (720)
..
T Consensus 167 ~~ 168 (698)
T KOG2611|consen 167 SH 168 (698)
T ss_pred ch
Confidence 33
No 311
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=71.85 E-value=2.2e+02 Score=36.33 Aligned_cols=290 Identities=13% Similarity=0.136 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHHHccC----hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHH
Q 004992 76 DRAAAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~~----~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~ 151 (720)
+..+...|+..|..++.. ++....-.+...+.++..++..... .++++..+.++.++.. ....
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~-----------~eVrE~ILeCv~qmI~--s~~~ 1216 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNA-----------VEIRELIIRCVSQMVL--SRVN 1216 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCc-----------hHHHHHHHHHHHHHHH--HHHh
Confidence 445677777777777652 2211122234567777777764433 2899999999999881 1111
Q ss_pred HHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCch-h----hHHHHhcCCcHHHHHhhcCC-CHHHHH
Q 004992 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-I----KTRVRMEGGIPPLVELLEFT-DTKVQR 225 (720)
Q Consensus 152 ~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-~----~~~~~~~~~i~~L~~ll~~~-~~~v~~ 225 (720)
-+.+ +.+.+..++.....+.. ..+...|...+..++.+.-. . ...+ ...+..+..+.+.. +.++-.
T Consensus 1217 -nIkS-GWktIF~VLs~aa~d~~----e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL 1288 (1780)
T PLN03076 1217 -NVKS-GWKSMFMVFTTAAYDDH----KNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISL 1288 (1780)
T ss_pred -hhhc-CcHHHHHHHHHHHhCcc----HHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccH
Confidence 2333 56777777763322111 17778888888877643111 0 1111 23455565555433 355666
Q ss_pred HHHHHHHHhccC---Ch------------------------hcHHH-----HHhCCCHHHHHH---hhcCCCHHHHHHHH
Q 004992 226 AAAGALRTLAFK---ND------------------------ENKNQ-----IVECNALPTLIL---MLRSEDSAIHYEAV 270 (720)
Q Consensus 226 ~a~~~L~~L~~~---~~------------------------~~~~~-----i~~~g~l~~L~~---ll~~~~~~v~~~a~ 270 (720)
.|+..|++++.. .+ ..... ......+|.|.. +..++.++||..|+
T Consensus 1289 ~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~AL 1368 (1780)
T PLN03076 1289 NAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSAL 1368 (1780)
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 666667655210 00 00000 001123454444 45678899999999
Q ss_pred HHHHHhhcCC-----cchHHHHHHcCChHHHHHhhccC-------------------ChH----HHHHHHHHHHHHhccC
Q 004992 271 GVIGNLVHSS-----PNIKKEVLAAGALQPVIGLLSSC-------------------CSE----SQREAALLLGQFAATD 322 (720)
Q Consensus 271 ~~L~nL~~~~-----~~~~~~~~~~~~l~~L~~ll~~~-------------------~~~----~~~~a~~~L~~l~~~~ 322 (720)
.+|-.+.... +..-..+.. +++-.+...++.. +.+ ....+..+|.+++.--
T Consensus 1369 qtLF~iL~~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf 1447 (1780)
T PLN03076 1369 QVLFDTLRNHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF 1447 (1780)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 9987775221 112222222 3444444444311 001 1233334444444211
Q ss_pred cchhhHH--HhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCC
Q 004992 323 SDCKVHI--VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSK 389 (720)
Q Consensus 323 ~~~~~~~--~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~ 389 (720)
..+...+ .-.+++..|..++..++..+...+..+|.+|....+..-+...| ..++..+.+++...
T Consensus 1448 t~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W--~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1448 VKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKW--LEVVLSLKEAANAT 1514 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHH--HHHHHHHHHHHHHh
Confidence 1221111 11234445555556788899999999999999833222122223 23456666666443
No 312
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=71.56 E-value=41 Score=30.28 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=71.2
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhC--CChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG--GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
+..++..+.+.++++ ++..|..++..+...+..... +.+.+. -.+..++.+|+.++.. .+++.+
T Consensus 23 l~~l~~ri~~LL~s~--~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~-----------~~~~~a 88 (165)
T PF08167_consen 23 LHKLVTRINSLLQSK--SAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPP-----------SVLEAA 88 (165)
T ss_pred HHHHHHHHHHHhCCC--ChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCH-----------HHHHHH
Confidence 333444444444333 344588888888877764211 333333 2677888999886552 788888
Q ss_pred HHHHHHhc----cChhhHHHHHHc---CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCch
Q 004992 137 AFALGLLA----VKPEHQQLIVDN---GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS 198 (720)
Q Consensus 137 ~~~L~~L~----~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 198 (720)
+.+|..|. +.|+..+++... ++++.++.++++ . .....++.+|..+...++.
T Consensus 89 i~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~--------~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 89 IITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--S--------SCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--c--------ccHHHHHHHHHHHHHHCCc
Confidence 88888877 557766666544 344445555544 1 5667788888887765554
No 313
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=70.11 E-value=1.6e+02 Score=32.59 Aligned_cols=163 Identities=21% Similarity=0.138 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHhccCChhcHHHHH---hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHc--CC
Q 004992 218 FTDTKVQRAAAGALRTLAFKNDENKNQIV---ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GA 292 (720)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~i~---~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~--~~ 292 (720)
.-..+.+..|+.+|+.+......+-..+- .+.++..++..+. .++..+..++++|.|+..+ +..++-+... ..
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i 632 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESI 632 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Confidence 33466777788888777753332211111 1235555555555 5667788889999999765 5444433322 11
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-----CCHHHHHHHHHHHHHHhhhhcCc
Q 004992 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQVITDM 367 (720)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~ 367 (720)
+..+.+.-..++..++...+....|++.. ....-.+.+..+.+...+.. .+.+.....+.||++|+. .+
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t---~~ 706 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT---VD 706 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc---cc
Confidence 12222221222344555544444455421 11111123455555555432 233445556778888887 66
Q ss_pred chhhhhhhcCCHHHHHHHhcC
Q 004992 368 HNQAGIAHNGGLVPLLKLLDS 388 (720)
Q Consensus 368 ~~~~~l~~~~~i~~l~~ll~~ 388 (720)
.....+...-.+..+.+-+.+
T Consensus 707 ~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHHH
Confidence 677777776677777776643
No 314
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=69.46 E-value=1.2e+02 Score=29.76 Aligned_cols=164 Identities=12% Similarity=0.083 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhccC-------ChhcHHHHHhCCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCCcchHHHHHHcC
Q 004992 223 VQRAAAGALRTLAFK-------NDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (720)
Q Consensus 223 v~~~a~~~L~~L~~~-------~~~~~~~i~~~g~l~~L~~ll~~~~----~~v~~~a~~~L~nL~~~~~~~~~~~~~~~ 291 (720)
....++..|..|+.- +.+.+-.+.-.+.+|.++.-+.+++ ......++..|+.++.... .+
T Consensus 78 t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~ 149 (262)
T PF14225_consen 78 TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LP 149 (262)
T ss_pred cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------Cc
Confidence 444556666666631 1112222222345778888777776 1344456677777763211 12
Q ss_pred ChHHHHHhhccCC----hHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCc
Q 004992 292 ALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDM 367 (720)
Q Consensus 292 ~l~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (720)
.+..++.....+. .+....++..|..-.. ++. ....+-.++++|.++.+.++...+..|..+.. ..
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~---~~ 219 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLP---HV 219 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhc---cc
Confidence 3333333333322 2333344444443221 222 12356778999999999999999999999998 44
Q ss_pred chhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 004992 368 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 368 ~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (720)
+.+.. ...+.+.++.++++.+...-.-.++..+..++
T Consensus 220 d~~~~-~~~dlispllrlL~t~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 220 DMRSP-HGADLISPLLRLLQTDLWMEALEVLDEIVTRS 256 (262)
T ss_pred cCCCC-cchHHHHHHHHHhCCccHHHHHHHHHHHHhhc
Confidence 44433 44557888999997665543333333333333
No 315
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=68.55 E-value=1.1e+02 Score=31.53 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHH
Q 004992 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (720)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L 296 (720)
.+++-....++++..+..+.+.....-.....-..++.++.+. ...+|+.|+.++..+...++.. +...++..+
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 3455555677777766643322111111122566788888887 7899999999999998776653 334455666
Q ss_pred HHhhcc
Q 004992 297 IGLLSS 302 (720)
Q Consensus 297 ~~ll~~ 302 (720)
-.++..
T Consensus 250 ~~~l~~ 255 (339)
T PF12074_consen 250 WKWLSS 255 (339)
T ss_pred HHHHHh
Confidence 666654
No 316
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=67.46 E-value=62 Score=31.25 Aligned_cols=107 Identities=23% Similarity=0.270 Sum_probs=64.4
Q ss_pred cCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCC--HHHHHHHHHHHHH
Q 004992 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRT 233 (720)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~ 233 (720)
..+.+.++++++.+++.......+-+-+....++..+ ..|-++.|.+++.+++ .-+|..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 4568999999977654211000001112222223322 2466778888887765 7799999999999
Q ss_pred hccCChhcHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHh
Q 004992 234 LAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNL 276 (720)
Q Consensus 234 L~~~~~~~~~~i~~~g~l~~L~~l-l~~~~~~v~~~a~~~L~nL 276 (720)
++...+..|+.+++. +..++.. +...+..+--..+..+..|
T Consensus 140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~~~~~~~~Lv~~~~dL 181 (249)
T PF06685_consen 140 LVHEGPISREEVIQY--FRELLNYFLERNPSFLWGSLVADICDL 181 (249)
T ss_pred HHHcCCCCHHHHHHH--HHHHHHHHhccCchHHHHHHHHHHHhc
Confidence 999888889888875 5555443 5544444443333344444
No 317
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=67.02 E-value=21 Score=31.16 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=58.8
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccCC-hhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~ 278 (720)
++..|..-+.+.++.++..|+..|-.++.+. ......+...+++..|.+++.. .+..|+..++..+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4567777788899999999999999988633 3456677778899999999988 788999999999988863
No 318
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=66.05 E-value=1.7e+02 Score=38.12 Aligned_cols=219 Identities=19% Similarity=0.167 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhhhcCchhhH---HHH--hcCCcHHHHHh-hcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHH
Q 004992 180 SVIRRAADAITNLAHENSSIKT---RVR--MEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~---~~~--~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~ 253 (720)
+++..+...+..+.......++ ... ....+..+..+ +.++++.++......+. ...-....+.+.+..
T Consensus 496 e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~ 569 (2341)
T KOG0891|consen 496 EIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRL 569 (2341)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHH
Confidence 8888886655555442222000 000 11222222222 23455666554444333 122233445566677
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcC
Q 004992 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (720)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 333 (720)
+...+.++.-.++..+...+++++..++...-.-.....+..+-.+-.++...+...++.-+..+........... ...
T Consensus 570 ~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~-v~~ 648 (2341)
T KOG0891|consen 570 LFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPY-VGP 648 (2341)
T ss_pred HHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhh-cCc
Confidence 7777888888899999999999988777433222222223323333233333333344333333322111122212 234
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhcccCC
Q 004992 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNE 408 (720)
Q Consensus 334 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~ 408 (720)
.+..++..+.+.++.+...+..++..|+...+ ..-..+.+ ..+..+.+.+ ...+..-+.++.+++.++....
T Consensus 649 ~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g--~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 649 ILLVLLPKLQDPSSGVEKAVLETIGELCAVGG--EEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred hHHHHHHHHhccchhhHHHHHHHHHHHHHhcc--chhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 45677777888888999999999999998432 11111222 3444455544 4456777888999999997643
No 319
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.56 E-value=8.8 Score=38.09 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh--cCCCHHHHHHHHHHHHHhccCChhcHHHHHh
Q 004992 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (720)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~ 247 (720)
.....++++|..++.++..+.+.||++.++.-+ .+.+|-+++....++.+|..++..+++.+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 366789999999999999999999999888765 4667999999999999999988888877754
No 320
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=64.41 E-value=29 Score=29.84 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=57.5
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccCChh-cHHHHHhCCCHHHHHHhhcC---CCHHHHHHHHHHHHHhhc
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~i~~~g~l~~L~~ll~~---~~~~v~~~a~~~L~nL~~ 278 (720)
++..|..-++++++.++..|+.+|-.+...... ....+.....+..|++++.. .++.|+..++..+.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 457788888899999999999999999974433 56667666788889999875 477899999999988864
No 321
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.97 E-value=2.2e+02 Score=33.60 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=93.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhccccc
Q 004992 343 QSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 422 (720)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~ 422 (720)
++-++.+|..++..|+-... ..| ..+.+...+..+-=.|++.+..||..++.+|..|....+....+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~--~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L-------- 363 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIK--SYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKL-------- 363 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHH--hcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHH--------
Confidence 56789999999999988777 223 44555555666656678999999999999999998775442221
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHH-HhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhh
Q 004992 423 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 501 (720)
Q Consensus 423 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll 501 (720)
..+.+.+-.+++.+. .+-++.|+......+..+.... +....-+.++..++
T Consensus 364 -----------------------~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li 415 (1048)
T KOG2011|consen 364 -----------------------ELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLI 415 (1048)
T ss_pred -----------------------HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHH
Confidence 112334556777777 4556777776666554443222 33444567888999
Q ss_pred cCCCchhhhhHHHHHHHHH
Q 004992 502 GSTNPKQQLDGAVALFKLA 520 (720)
Q Consensus 502 ~~~~~~v~~~a~~aL~~L~ 520 (720)
.+.+++++..|..-+..=.
T Consensus 416 ~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 416 YDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred hccCcchHHHHHHHHHHHh
Confidence 9999999888777665443
No 322
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=63.84 E-value=1.1e+02 Score=36.50 Aligned_cols=239 Identities=16% Similarity=0.155 Sum_probs=123.4
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHH-HhccCCCccchhhhHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNL-LKRHMDSNCSRAVNSV 181 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~~~~~~~~v 181 (720)
.++.|+..+-++.| ++|..++-++..+. .........++...+..+.-+ |....+-......-.|
T Consensus 78 ~~e~L~~~~~~~~w------------e~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapV 145 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQW------------EIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPV 145 (1549)
T ss_pred HHHHHHHHhcCchh------------hhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhh
Confidence 45566666666666 77777777777776 222221111111111111111 1111110001112278
Q ss_pred HHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC
Q 004992 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (720)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~ 261 (720)
++.++++|..+...-.... ....+..+.+++..++++++.-.+..+.....-..+....+. ..+++..+.-+.+.
T Consensus 146 re~caq~L~~~l~~~~~s~----~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ds 220 (1549)
T KOG0392|consen 146 REACAQALGAYLKHMDESL----IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLEDS 220 (1549)
T ss_pred HHHHHHHHHHHHHhhhhHh----hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhc
Confidence 8999999988876333221 123567778888877777776555555443310111111111 23567777888889
Q ss_pred CHHHHHHHHHHHHHhhcCCcchH-HHHHHcCChHHHHHhhccCCh-H-HHHHHHHHHHHHhccCc--ch-hhHHHhcCCh
Q 004992 262 DSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIGLLSSCCS-E-SQREAALLLGQFAATDS--DC-KVHIVQRGAV 335 (720)
Q Consensus 262 ~~~v~~~a~~~L~nL~~~~~~~~-~~~~~~~~l~~L~~ll~~~~~-~-~~~~a~~~L~~l~~~~~--~~-~~~~~~~~~~ 335 (720)
+.+++..|+..+...+..-.... +.+ ..++..+...+..-+. . -.......+..++...+ +. ...-.+.|++
T Consensus 221 ~ddv~~~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lv 298 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLV 298 (1549)
T ss_pred chHHHHHHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccc
Confidence 99999998888877753321111 111 1123333333322111 0 01111122223332110 00 1111235889
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 336 RPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 336 ~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
|.+...+++.-..++.+++..+..+.+
T Consensus 299 p~~~p~l~~~i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 299 PRLWPFLRHTISSVRRAALETLAMLLE 325 (1549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998888999999999999988
No 323
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=63.36 E-value=12 Score=36.02 Aligned_cols=86 Identities=20% Similarity=0.344 Sum_probs=59.3
Q ss_pred CCcceEEEEECCeEEehhHHHHhhcch-hHhhcccCCcC---CCCCCceecC-CCCHHHHHHHHHHHhcCCcccCh-hhH
Q 004992 550 ATLSDVTFLVEGRRFYAHRICLLASSD-AFRAMFDGGYR---EKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTL-DIA 623 (720)
Q Consensus 550 ~~~~Dv~~~~~~~~~~~h~~iL~~~s~-~f~~~~~~~~~---e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~-~~~ 623 (720)
+...-++..+++..|.+.+.+|.+.-. ..-.||.+++. .+..+++++. +++..+|+++|+|--+|.+..++ -.+
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSv 172 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSV 172 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCch
Confidence 333446667778888888888775432 23456665432 2334577775 59999999999999999988544 456
Q ss_pred HHHHHHHhhhCh
Q 004992 624 QDLLRAADQYLL 635 (720)
Q Consensus 624 ~~ll~~A~~~~~ 635 (720)
.+|-.++|++.+
T Consensus 173 pELrEACDYLli 184 (438)
T KOG3840|consen 173 SELREACDYLLV 184 (438)
T ss_pred HHHHhhcceEEe
Confidence 777778887765
No 324
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=63.18 E-value=1.5e+02 Score=29.84 Aligned_cols=138 Identities=22% Similarity=0.153 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhc-----------CCcHHHHHhhc------CCCHHHHHHHHHHHHHhccCChhcH
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRME-----------GGIPPLVELLE------FTDTKVQRAAAGALRTLAFKNDENK 242 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~i~~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~~~ 242 (720)
++|..|+.|+..+..++++.+..+... .....|+..|- +.|+--..-|+.+|.++..+++..|
T Consensus 53 ~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~K 132 (312)
T PF04869_consen 53 DLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEAK 132 (312)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 889999999999999899888776643 11223444443 3355556678899999998888887
Q ss_pred HHHHhC--C----------CHHHHHHhhc-----CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcC-ChHHHHHhhccC-
Q 004992 243 NQIVEC--N----------ALPTLILMLR-----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG-ALQPVIGLLSSC- 303 (720)
Q Consensus 243 ~~i~~~--g----------~l~~L~~ll~-----~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~-~l~~L~~ll~~~- 303 (720)
+....- | .++.+..+|. +.++.++.--+..|.....+++.....+...+ .++.|++.....
T Consensus 133 e~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~ 212 (312)
T PF04869_consen 133 EQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSS 212 (312)
T ss_dssp HHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--T
T ss_pred HHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCC
Confidence 766431 1 1344444433 23555665556666666566666656665553 567777764321
Q ss_pred --ChHHHHHHHHHHHH
Q 004992 304 --CSESQREAALLLGQ 317 (720)
Q Consensus 304 --~~~~~~~a~~~L~~ 317 (720)
+.-++--++..|+-
T Consensus 213 ~~~~~VqGL~A~LLGi 228 (312)
T PF04869_consen 213 SEDVLVQGLCAFLLGI 228 (312)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHH
Confidence 23344444444443
No 325
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=62.93 E-value=62 Score=32.18 Aligned_cols=113 Identities=13% Similarity=0.147 Sum_probs=67.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchH-HHHHHcCChHHHHHhhc------------cCChHHHHHHHHHHH
Q 004992 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIGLLS------------SCCSESQREAALLLG 316 (720)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~-~~~~~~~~l~~L~~ll~------------~~~~~~~~~a~~~L~ 316 (720)
++|.++.++.+.++.++...+.+|..+....+... ..+...|..+.+-+.+. +.+..+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999986544322 22666776655555443 233456666666777
Q ss_pred HHhcc---Cc-chhhHHHhcCChHHHHHHhc----CCCHHHHHHHHHHHHHHhh
Q 004992 317 QFAAT---DS-DCKVHIVQRGAVRPLIEMLQ----SPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 317 ~l~~~---~~-~~~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~L~~l~~ 362 (720)
.++.. .+ ..+......-+-..++.-+. ...+.++...+..+..+..
T Consensus 200 ~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~ 253 (282)
T PF10521_consen 200 SLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID 253 (282)
T ss_pred HHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence 66431 11 11111111111121222221 2247777777777776666
No 326
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=62.64 E-value=17 Score=29.13 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHH
Q 004992 449 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 516 (720)
Q Consensus 449 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL 516 (720)
...++..|+.+...+++..+..+...|..+..++.....+.+.|+...|.++-...+++.+...-..+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45578889999999988899999999999999999999999999999988888777777765554443
No 327
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.73 E-value=3.2e+02 Score=32.10 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc---cChhhHH
Q 004992 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA---VKPEHQQ 151 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~---~~~~~~~ 151 (720)
+...+.+.+..+..+-. ++++-...-+.-.+|.++.-++.... .+|...+.+|.--. +....++
T Consensus 480 nkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPs------------slqvkiLkilEyAVtvvncvPeqE 547 (2799)
T KOG1788|consen 480 NKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPS------------SLQVKILKILEYAVTVVNCVPEQE 547 (2799)
T ss_pred CcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCCh------------HHHHHHHHHHHHHHhhhccCcHHH
Confidence 33357777777777655 67765666666788888877776555 56666666554322 1111111
Q ss_pred HHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC------C------
Q 004992 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------T------ 219 (720)
Q Consensus 152 ~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~------ 219 (720)
. -.|.-+|+.+-.. .+....+.....|...+...+..+.+-|.+..|...++. +
T Consensus 548 L-------lSLCvLLqqpIss-------alkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgv 613 (2799)
T KOG1788|consen 548 L-------LSLCVLLQQPISS-------ALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGV 613 (2799)
T ss_pred H-------HHHHHHhcchhhH-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhH
Confidence 1 1233344433221 333333333333334455556666666666666544431 0
Q ss_pred ---------CH--------------------------HHH------HHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhh
Q 004992 220 ---------DT--------------------------KVQ------RAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (720)
Q Consensus 220 ---------~~--------------------------~v~------~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll 258 (720)
++ .+. ...-.+|-.+...+.+|.+.+.+..++..++.++
T Consensus 614 sehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl 693 (2799)
T KOG1788|consen 614 SEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL 693 (2799)
T ss_pred HHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee
Confidence 00 000 0123445555556677777777777777777666
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCC------------hHHHHHHHHHHHHHhccCcchh
Q 004992 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC------------SESQREAALLLGQFAATDSDCK 326 (720)
Q Consensus 259 ~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~------------~~~~~~a~~~L~~l~~~~~~~~ 326 (720)
-+.+-|...++++..|....+.. +...-+-.+++.|+++- .........+++.+...+...+
T Consensus 694 --indehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaq 767 (2799)
T KOG1788|consen 694 --INDEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQ 767 (2799)
T ss_pred --echHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchhe
Confidence 34455666677777776554431 11123445666666531 2334455667777776666677
Q ss_pred hHHHhcCChHHHHHHh
Q 004992 327 VHIVQRGAVRPLIEML 342 (720)
Q Consensus 327 ~~~~~~~~~~~L~~ll 342 (720)
..+.+.++...|...|
T Consensus 768 rvFgeatGFslLlttL 783 (2799)
T KOG1788|consen 768 RVFGEATGFSLLLTTL 783 (2799)
T ss_pred eehhccccHHHHHHHH
Confidence 7788888888877776
No 328
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=61.38 E-value=9.9 Score=30.93 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhh
Q 004992 470 RVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL 510 (720)
Q Consensus 470 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 510 (720)
...+.+..|+..++....+++.|+++.|+.||.+.+.++..
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 45677888999999888899999999999999999988754
No 329
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=61.02 E-value=45 Score=28.70 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=57.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-hHHHHHHcCChHHHHHhhcc---CChHHHHHHHHHHHHHhc
Q 004992 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSS---CCSESQREAALLLGQFAA 320 (720)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~-~~~~~~~~~~l~~L~~ll~~---~~~~~~~~a~~~L~~l~~ 320 (720)
++..|.+-++++++.++..|+.+|..+...... +...+....++..++.++.. .+..++..++..+.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 577888889999999999999999999866544 55666666788889999875 367899999988888764
No 330
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=60.96 E-value=29 Score=30.24 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=58.7
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~ 278 (720)
.++..|.+-+.++++.++..|+..|-.+..+ .......+.+.+++..|.+++.+ .++.|+..++..+.+.+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3567788888889999999999999988874 34567777788899999999874 577899999999988863
No 331
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=59.86 E-value=1.8e+02 Score=31.77 Aligned_cols=169 Identities=19% Similarity=0.093 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc-----------CCCHHHHHHHHHHHHHhccCChhcHHHHHhC
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-----------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----------~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~ 248 (720)
+|...|-..|..+...-+ +...+..|+.+.. ..++.++...+..|..-.. . ...-.
T Consensus 252 ~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~----A--a~~~~ 318 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI----A--ATSFP 318 (501)
T ss_pred hHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH----H--HhCCc
Confidence 788888888888876411 2234555655544 2346777765555554211 0 00112
Q ss_pred CCHHHHHHhhcCC--CHHHHHHHHHHH---HHhhcCCcch----HHHHHHcCChHHHHH----hhccCChHHHHHHHHHH
Q 004992 249 NALPTLILMLRSE--DSAIHYEAVGVI---GNLVHSSPNI----KKEVLAAGALQPVIG----LLSSCCSESQREAALLL 315 (720)
Q Consensus 249 g~l~~L~~ll~~~--~~~v~~~a~~~L---~nL~~~~~~~----~~~~~~~~~l~~L~~----ll~~~~~~~~~~a~~~L 315 (720)
..+..+..-+.+. +..++..++..+ .......... -...+..++.+.+-. -....+...|..+-.+|
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 2344444444444 556666666666 4443322221 122334555555510 01123567888999999
Q ss_pred HHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhh
Q 004992 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (720)
Q Consensus 316 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (720)
+.++...+... .-+-+++..|..-|.+..++++...-.+|..++..
T Consensus 399 G~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 399 GLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 99997655442 12346788899999889999999999999999983
No 332
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=59.34 E-value=73 Score=32.71 Aligned_cols=138 Identities=20% Similarity=0.197 Sum_probs=77.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC-------CHHHHHHHHHHHHHhhcCCcch
Q 004992 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-------DSAIHYEAVGVIGNLVHSSPNI 283 (720)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~-------~~~v~~~a~~~L~nL~~~~~~~ 283 (720)
.+.+.+.+.+...+..|+.. |.. ++.- ..++|.++.++.+. +.......+.++..|. .|+..
T Consensus 182 ~It~a~~~~~~~~r~~aL~s---L~t-D~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl-~N~~l 250 (343)
T cd08050 182 EITEALVGSNEEKRREALQS---LRT-DPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL-DNPNL 250 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHH---hcc-CCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh-cCCCC
Confidence 34444444555566554444 332 1111 23577777776542 4556666777777775 45655
Q ss_pred HHHHHHcCChHHHHHhhc----------cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCC--HHHHH
Q 004992 284 KKEVLAAGALQPVIGLLS----------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD--VQLRE 351 (720)
Q Consensus 284 ~~~~~~~~~l~~L~~ll~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~~ 351 (720)
.-...-..++|.++.++- ..+|.+|..|+..|..++......-. -+...+...+.+.+.++. .....
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhh
Confidence 555555568888887772 24589999999999999853222211 122334455666665432 22344
Q ss_pred HHHHHHHHH
Q 004992 352 MSAFALGRL 360 (720)
Q Consensus 352 ~a~~~L~~l 360 (720)
-|+..|..|
T Consensus 330 GAi~GL~~l 338 (343)
T cd08050 330 GAIVGLSAL 338 (343)
T ss_pred HHHHHHHHh
Confidence 555555444
No 333
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=58.37 E-value=41 Score=29.21 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=57.0
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhcHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhh
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~nL~ 277 (720)
++..+..-+.++++.++..|+..|-.+..+ .......+...+++..|++++.. .+..|+..++..+...+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456788888899999999999999988863 34567777878899999999963 46799999999888886
No 334
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=58.27 E-value=1.2e+02 Score=31.18 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=77.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC-------ChHHHHHHHHHHHHHhccCcch
Q 004992 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQFAATDSDC 325 (720)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~ 325 (720)
.+...+.+++...+.. +|..|..+ +.. ..++|.++.++.+. +.......+.++..|.. ++..
T Consensus 182 ~It~a~~~~~~~~r~~---aL~sL~tD-~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l 250 (343)
T cd08050 182 EITEALVGSNEEKRRE---ALQSLRTD-PGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNL 250 (343)
T ss_pred HHHHHHhCCCHHHHHH---HHHHhccC-CCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCC
Confidence 3444444455556644 44555332 332 23678888777643 35555666677777765 3333
Q ss_pred hhHHHhcCChHHHHHHhc----------CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCC--ChhH
Q 004992 326 KVHIVQRGAVRPLIEMLQ----------SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSK--NGSL 393 (720)
Q Consensus 326 ~~~~~~~~~~~~L~~ll~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~--~~~v 393 (720)
.....-+.++|.++.++- ++...+|+.|+..|..++...+.. ..-....+...+.+.+.++ ....
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~---y~~l~~ri~~tl~k~l~d~~~~~~~ 327 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS---YNTLQPRITRTLLKALLDPKKPLTT 327 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC---CCcHHHHHHHHHHHHHcCCCCCcch
Confidence 333333348888888772 244689999999999999833221 1112233344555555433 2333
Q ss_pred HHHHHHHHHhcc
Q 004992 394 QHNAAFALYGLA 405 (720)
Q Consensus 394 ~~~a~~~L~~l~ 405 (720)
...|+..|..+.
T Consensus 328 ~YGAi~GL~~lG 339 (343)
T cd08050 328 HYGAIVGLSALG 339 (343)
T ss_pred hhHHHHHHHHhC
Confidence 666666666653
No 335
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=57.95 E-value=3e+02 Score=30.52 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhc---CCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhC--CCHHHH
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRME---GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTL 254 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~--g~l~~L 254 (720)
+.+-.|+.+|+-+..++..+...+... ..+..++..+. .++..+..++++|.|+-. ++.+++.+... ..+..+
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~~i~~~~ 636 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSRLESILDPV 636 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhhh
Confidence 566677777777776444433222211 23334444444 457778889999999997 57777776643 112222
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC-----ChHHHHHHHHHHHHHhccCcchhhHH
Q 004992 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDSDCKVHI 329 (720)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~ 329 (720)
...-..++..++........|++.. ..+.-.+.++.+.+...+... +.+.....+.+|++|+..+. ....+
T Consensus 637 ~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~-~~~~~ 712 (745)
T KOG0301|consen 637 IEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDA-SVIQL 712 (745)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccH-HHHHH
Confidence 2222224456665555555555421 111111234555555544421 22334455668888876433 33334
Q ss_pred HhcCChHHHHHHhcC
Q 004992 330 VQRGAVRPLIEMLQS 344 (720)
Q Consensus 330 ~~~~~~~~L~~ll~~ 344 (720)
.+.--+..+.+-+++
T Consensus 713 A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLKE 727 (745)
T ss_pred HHhcCHHHHHHHHHH
Confidence 444445666666654
No 336
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=57.93 E-value=2.3e+02 Score=30.37 Aligned_cols=110 Identities=15% Similarity=0.064 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhccCChhcHHHHHhCCCHH-HHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHh
Q 004992 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALP-TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (720)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~-~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~l 299 (720)
...|..++.+|+.++..-+... .. .... .|+..|++....-|..+.-+|...+...........-..+.+.|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~--~~--~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESS--LQ--EIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccch--HH--HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 4677889999998885322111 11 1232 68888988888778888888888875433221111012345667777
Q ss_pred hccCChHHHHHHHHHHHHHhccCcchhhHHHhcCC
Q 004992 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (720)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 334 (720)
|.++.+..-.+....+..+-..+......+.+.|.
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77544433444444444443323333334444454
No 337
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.22 E-value=3.4e+02 Score=30.97 Aligned_cols=174 Identities=16% Similarity=0.167 Sum_probs=84.7
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHH-hCCCHH----HHHHhh---cC----CCHHHHHHHHHHHHH
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALP----TLILML---RS----EDSAIHYEAVGVIGN 275 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~l~----~L~~ll---~~----~~~~v~~~a~~~L~n 275 (720)
.+|.++++|+.++..+...|+.++-.+-.-.+.....+- ...+.| .+..++ +. +++-+-+...+.+.-
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i 578 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI 578 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh
Confidence 467788888888888888888888866542222222222 222222 222333 22 233333333333333
Q ss_pred hhcCCcchHHHHHHcCChHHHHHhh----ccC-ChHH----HHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCC
Q 004992 276 LVHSSPNIKKEVLAAGALQPVIGLL----SSC-CSES----QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 346 (720)
Q Consensus 276 L~~~~~~~~~~~~~~~~l~~L~~ll----~~~-~~~~----~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 346 (720)
+ +..... .....+..|.+++ +++ +|.- -+..+..+...+..+ .......+..++|.+...+..+-
T Consensus 579 ~----~~~i~p-~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~-~~~vs~~e~aL~p~fq~Il~eDI 652 (960)
T KOG1992|consen 579 L----QSAIIP-HAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKAN-PSAVSSLEEALFPVFQTILSEDI 652 (960)
T ss_pred C----HHhhhh-hhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHHHHHHH
Confidence 3 211100 0111233333333 333 2322 222333333333322 22333445567788888887666
Q ss_pred HHHHHHHHHHHHHHhhhhcCc--ch----------hhhhhhcCCHHHHHHHhc
Q 004992 347 VQLREMSAFALGRLAQVITDM--HN----------QAGIAHNGGLVPLLKLLD 387 (720)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~~~~--~~----------~~~l~~~~~i~~l~~ll~ 387 (720)
.+..-.+...++.+.++.+.+ +. -..|...|-++.+++++.
T Consensus 653 ~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 653 QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 666667777777777633220 00 113556677888888773
No 338
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=56.04 E-value=40 Score=29.46 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=56.5
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
++..|..-|.+.+. .++..|+..|-.+. .+..++..+...+++..|+.++....+. +|+
T Consensus 38 a~ral~KRl~~~n~------------~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~-------~Vk 98 (144)
T cd03568 38 CLKAIMKRLNHKDP------------NVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHP-------TVK 98 (144)
T ss_pred HHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCH-------HHH
Confidence 44556666666666 88999999999998 5667888999999999999999885222 899
Q ss_pred HHHHHHHHHhhh
Q 004992 183 RRAADAITNLAH 194 (720)
Q Consensus 183 ~~a~~~L~~l~~ 194 (720)
..++..+...+.
T Consensus 99 ~kil~li~~W~~ 110 (144)
T cd03568 99 EKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHH
Confidence 999999888774
No 339
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=55.74 E-value=1.6e+02 Score=26.82 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=54.4
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHH--hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchH
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV--ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~--~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~ 284 (720)
..+|.+++=|...+..-+..|...+..|... .....+. -..++..+-..|.+.+++|...++.+|..|+..++...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 4567777777666666666666666666642 2222222 24477788888999999999999999999976666655
Q ss_pred HHH
Q 004992 285 KEV 287 (720)
Q Consensus 285 ~~~ 287 (720)
..+
T Consensus 116 ~aL 118 (183)
T PF10274_consen 116 EAL 118 (183)
T ss_pred HHH
Confidence 544
No 340
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=55.08 E-value=1.8e+02 Score=31.73 Aligned_cols=176 Identities=13% Similarity=0.086 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHh--c-cCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcC
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK--R-HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--~-~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (720)
+|...|-..|..+..+- -+..++..|..+.. . ..+.........++...+..|..-.. . ......
T Consensus 252 ~V~~~ae~~LKr~~~~~------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~----A--a~~~~~ 319 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSL------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI----A--ATSFPN 319 (501)
T ss_pred hHHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH----H--HhCCcc
Confidence 78888999999888221 12234566666655 2 11111111122555544444433111 0 011123
Q ss_pred CcHHHHHhhcCC--CHHHHHHHHHHH---HHhccCChhc-HHH---HHhCCCHHHHHH----hhcCCCHHHHHHHHHHHH
Q 004992 208 GIPPLVELLEFT--DTKVQRAAAGAL---RTLAFKNDEN-KNQ---IVECNALPTLIL----MLRSEDSAIHYEAVGVIG 274 (720)
Q Consensus 208 ~i~~L~~ll~~~--~~~v~~~a~~~L---~~L~~~~~~~-~~~---i~~~g~l~~L~~----ll~~~~~~v~~~a~~~L~ 274 (720)
.+..+..-+.+. +..++..++..+ .......... ... .+..++.|.+-. --...+...|..+-.+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 334444444454 567777777766 4444322222 111 222334444410 011246688999999999
Q ss_pred HhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhc
Q 004992 275 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (720)
Q Consensus 275 nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 320 (720)
.|+...+..- .-+-+.+..|..-|.+..++++..+-.+|..++.
T Consensus 400 ~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 400 LLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 9998777642 1234577888888888889999998888888874
No 341
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=55.07 E-value=1.6e+02 Score=26.85 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=53.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhH
Q 004992 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (720)
Q Consensus 249 g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (720)
-.+|.+..=|...+...+-.|...+..+.......+-.-+-..++..+...|.+.++++...++.+|..++...+.....
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 36788887777766666666666666665441222222234567778888889999999999999999996544444433
No 342
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=55.00 E-value=2.5e+02 Score=36.79 Aligned_cols=202 Identities=18% Similarity=0.111 Sum_probs=112.6
Q ss_pred HhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 004992 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (720)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~ 283 (720)
...+.+..+...+.++.-.++..+...+++++..++...-.......+..+-.+..+.-..+...+..-+..+....+..
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 33445555666677777888888888889888756522111111111222222222222223333333333332222221
Q ss_pred HHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhh
Q 004992 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 284 ~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 362 (720)
. .......+..++..+.+.+..+...+..++..||...........+ ..++.+.+.+.+ ....-+.++..++.++..
T Consensus 642 i-~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 642 I-SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred H-HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 1 1122345577777788888888889999999998654433334444 567777777765 566778899999999998
Q ss_pred hhcCcchhhhhhhcCCHHHHHHHhcC-CChhHHHHHHHHHHhcccCC
Q 004992 363 VITDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNE 408 (720)
Q Consensus 363 ~~~~~~~~~~l~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~ 408 (720)
-.+. -.........++..+...+.. ....++..+...+.++-...
T Consensus 720 ~~~~-~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 720 STGY-VVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred ccce-EecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 2111 011122223345555555533 34567777777777664433
No 343
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=54.30 E-value=46 Score=29.02 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=56.2
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
++..|..-|.+.+. .++..|+..|-.+. .+..+...+...+++..|+.++....+. .|+
T Consensus 42 a~ral~krl~~~n~------------~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~-------~Vk 102 (142)
T cd03569 42 AMRALKKRLLSKNP------------NVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNE-------EVR 102 (142)
T ss_pred HHHHHHHHHcCCCh------------HHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCH-------HHH
Confidence 45566677777666 88999999998888 3577888999999999999999763222 888
Q ss_pred HHHHHHHHHhhh
Q 004992 183 RRAADAITNLAH 194 (720)
Q Consensus 183 ~~a~~~L~~l~~ 194 (720)
..++..+...+.
T Consensus 103 ~kil~li~~W~~ 114 (142)
T cd03569 103 QKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHH
Confidence 999988888774
No 344
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=53.94 E-value=23 Score=29.00 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.7
Q ss_pred ChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 004992 651 SLENVSSMYELSEAFHAISLRHTCILYIMEH 681 (720)
Q Consensus 651 ~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 681 (720)
+.+++.+++.+|..|+.+.|.+.|.+++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3889999999999999999999999999886
No 345
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=53.77 E-value=1.9e+02 Score=28.91 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=84.3
Q ss_pred HHHHHhCCCHHHHHHhhcC-----------------------CCHHHHHHHHHHHHHhhcCCcchHH-------------
Q 004992 242 KNQIVECNALPTLILMLRS-----------------------EDSAIHYEAVGVIGNLVHSSPNIKK------------- 285 (720)
Q Consensus 242 ~~~i~~~g~l~~L~~ll~~-----------------------~~~~v~~~a~~~L~nL~~~~~~~~~------------- 285 (720)
+..+++.|++|.|-+++.. ++..++.+-++.+.+++..+.....
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 3556778888888887641 1124678889999999864322111
Q ss_pred --------HHHHcCChHHHHHhhccC--ChHHHHHHHHHHHHHhccCcc--hhhHHHhcCChHHHHHHhcCC---CHHHH
Q 004992 286 --------EVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSD--CKVHIVQRGAVRPLIEMLQSP---DVQLR 350 (720)
Q Consensus 286 --------~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~~L~~ll~~~---~~~v~ 350 (720)
.--..|++..+++.+... +...|-..+.++-.+.++.+. .+..+.+.|+++.++..+-++ +..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 011356777788777654 345677778888888877655 345677899999999988653 45688
Q ss_pred HHHHHHHHHHhh
Q 004992 351 EMSAFALGRLAQ 362 (720)
Q Consensus 351 ~~a~~~L~~l~~ 362 (720)
......|+.|..
T Consensus 162 Q~~FDLLGELiK 173 (303)
T PF12463_consen 162 QSNFDLLGELIK 173 (303)
T ss_pred HHHHHHHHHHHC
Confidence 899999999998
No 346
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=53.51 E-value=1.2e+02 Score=32.12 Aligned_cols=229 Identities=10% Similarity=0.045 Sum_probs=108.8
Q ss_pred CCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHH
Q 004992 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (720)
Q Consensus 103 ~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v 181 (720)
...+..|+.++.+++. +-|.....+|.++- ..+..|..+. ......+.+++...... .-
T Consensus 132 ~~fi~~Ll~l~~S~D~------------rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~-------~g 191 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDP------------RERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERH-------NG 191 (409)
T ss_dssp HHHHHHHHHTTTSSTH------------HHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS---------ST
T ss_pred HHHHHHHHHHcCCCCH------------HHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcccc-------cC
Confidence 3455667777777665 66777777777766 4445544433 33455566666544332 22
Q ss_pred HHHHHHHHHHhhhcCc-hhhHHHHhcCCcHHHHHhhcCCC-HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc
Q 004992 182 IRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (720)
Q Consensus 182 ~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~ 259 (720)
....+.++..+..+-. +.++.. ..-....++.+.+.+. .........++......++.....+ +..+++.--
T Consensus 192 I~elLeil~sii~gf~~plk~eh-~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP 265 (409)
T PF01603_consen 192 IAELLEILGSIINGFAVPLKEEH-KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWP 265 (409)
T ss_dssp HHHHHHHHHHHHTT--SS--HHH-HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-
T ss_pred HHHHHHHHHHHHhccCCCCcHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCC
Confidence 2334455555544211 111100 0011133333444432 2223344445555444333332222 222333322
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHh--cCChHH
Q 004992 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRP 337 (720)
Q Consensus 260 ~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~ 337 (720)
-.++.=...-+.-+..+...-+...-.-+...+...+...+.+.+..+.+.|+..+.|= .....+.+ ..++|.
T Consensus 266 ~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~~li~~~~~~i~p~ 340 (409)
T PF01603_consen 266 KTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE-----YFLSLISQNSRVILPI 340 (409)
T ss_dssp SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHHHHHHCTHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHHHHHHhChHHHHHH
Confidence 33433333334455555433222222223344667777888888888877777643322 11111111 125677
Q ss_pred HHHHhcC-----CCHHHHHHHHHHHHHHhh
Q 004992 338 LIEMLQS-----PDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 338 L~~ll~~-----~~~~v~~~a~~~L~~l~~ 362 (720)
+...+.. -+..++..|..++..+..
T Consensus 341 i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 341 IFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7766632 467899999999888887
No 347
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=53.28 E-value=55 Score=28.17 Aligned_cols=72 Identities=22% Similarity=0.183 Sum_probs=56.2
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
++..|..-|.+++. .++..|+..|..+. .++.++..+...+++..|..++......+ .|+
T Consensus 38 a~r~l~krl~~~n~------------~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~------~Vk 99 (133)
T smart00288 38 AVRLLKKRLNNKNP------------HVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLP------LVK 99 (133)
T ss_pred HHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcH------HHH
Confidence 44556666776666 88999999999988 46778889999999999999998765531 388
Q ss_pred HHHHHHHHHhhh
Q 004992 183 RRAADAITNLAH 194 (720)
Q Consensus 183 ~~a~~~L~~l~~ 194 (720)
..++..+...+.
T Consensus 100 ~kil~li~~W~~ 111 (133)
T smart00288 100 KRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHH
Confidence 888888877764
No 348
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=52.84 E-value=1.8e+02 Score=29.74 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC--ChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHH
Q 004992 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (720)
Q Consensus 261 ~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 338 (720)
.+++...+.++++..+....+.....-.....-..++.++-+. .+.+|+.|..++..+...++.. +...++..+
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 3455566677777777644332211111233456677777777 8999999999999987655543 223344555
Q ss_pred HHHhc
Q 004992 339 IEMLQ 343 (720)
Q Consensus 339 ~~ll~ 343 (720)
-.++.
T Consensus 250 ~~~l~ 254 (339)
T PF12074_consen 250 WKWLS 254 (339)
T ss_pred HHHHH
Confidence 55553
No 349
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=52.53 E-value=42 Score=31.56 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=51.7
Q ss_pred hhHHHHHHcCChHHHHHHHhccCCCc----------cchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc
Q 004992 148 EHQQLIVDNGALSHLVNLLKRHMDSN----------CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (720)
Q Consensus 148 ~~~~~~~~~~~l~~L~~lL~~~~~~~----------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (720)
..++.+...|++..++.+|+.+.... ......++...+...|..+|.++..++..+.. .++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHH
Confidence 44556667889999999998765543 11122378889999999999988888876654 2332233322
Q ss_pred CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 004992 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~ 278 (720)
......-..+..++..+-.++......+.+. .+..++.++.......+ -+..|..++.
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr~~~--~L~~L~~lc~ 169 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGRQPR--YLDFLSSLCV 169 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCCChH--HHHHHhhhcc
Confidence 2211111245666777776676666666554 48888888876332222 2455555553
No 350
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=52.28 E-value=3.1e+02 Score=29.00 Aligned_cols=216 Identities=12% Similarity=0.047 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhhhcCchh-hHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhh
Q 004992 180 SVIRRAADAITNLAHENSSI-KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll 258 (720)
.=...+-..|..+....+.. .........+..|+.++.++|+.-|.....+|..+-......+..+... +...+...+
T Consensus 105 pHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi 183 (409)
T PF01603_consen 105 PHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFI 183 (409)
T ss_dssp HHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHh
Confidence 33344444555554322211 1123344567889999999999999999999998886556666666554 666777777
Q ss_pred cCC-CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCCh-HHHHHHHHHHHHHhccCcchhhHHHhcCChH
Q 004992 259 RSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (720)
Q Consensus 259 ~~~-~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 336 (720)
... ...-...++.+++.+..+-..--+.....-+...++.+...... .....-..++..+...++.....+ +.
T Consensus 184 ~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~ 258 (409)
T PF01603_consen 184 YETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IK 258 (409)
T ss_dssp HTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HH
T ss_pred cCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HH
Confidence 643 33455667888888865422111111111123344444444432 223344444444444333332222 22
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHh
Q 004992 337 PLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 403 (720)
Q Consensus 337 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~ 403 (720)
.++..=-..++.-...-+.-+..+.... +...-.-........+.+++.+.+..|.+.|+....|
T Consensus 259 ~llk~WP~t~s~Kev~FL~el~~il~~~--~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 259 GLLKHWPKTNSQKEVLFLNELEEILEVL--PPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp HHHHHS-SS-HHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 2333223345555555555666665521 1111111112245556677788888887777665433
No 351
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=52.22 E-value=1.8e+02 Score=34.74 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhc
Q 004992 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (720)
Q Consensus 264 ~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 343 (720)
.||+.++++|..+..+-... .....+..+.+++....|+++.-.+..+....+...+... -.-..+++.++..|.
T Consensus 144 pVre~caq~L~~~l~~~~~s----~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~-~~~~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHMDES----LIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF-QLLNLVLDFVIEGLE 218 (1549)
T ss_pred hhHHHHHHHHHHHHHhhhhH----hhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Confidence 68999999999887543321 1123577888888888888877666655544321111111 111235677888888
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 004992 344 SPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~ 362 (720)
+.+.+++..|+..+...+.
T Consensus 219 ds~ddv~~~aa~~l~~~~s 237 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPS 237 (1549)
T ss_pred hcchHHHHHHHHHhhhhhH
Confidence 9999999999999888776
No 352
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=51.97 E-value=16 Score=29.58 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=38.2
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHhcC------------ChhhHHHHHHHHHH--cCcHHHHHHHHHHHHHHH
Q 004992 624 QDLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEA--FHAISLRHTCILYIMEHF 682 (720)
Q Consensus 624 ~~ll~~A~~~~~~~l~~~c~~~l~~~i------------~~~~~~~~~~~a~~--~~~~~L~~~~~~~i~~~~ 682 (720)
.+++..|+.|+++.|.+.|.+++..++ +.+....++.--.. .+...+.+.+..|+..+.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~ 74 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNP 74 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCH
Confidence 468899999999999999999988764 22233333331111 234468888888887553
No 353
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=51.95 E-value=2.7e+02 Score=30.15 Aligned_cols=140 Identities=19% Similarity=0.165 Sum_probs=84.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC--------CCHHHHHHHHHHHHHhhcCCc
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--------EDSAIHYEAVGVIGNLVHSSP 281 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~--------~~~~v~~~a~~~L~nL~~~~~ 281 (720)
..+.+.+...++..+..|+..|.. +.+. ...+|.++.++.+ .+-.....++..++.|. +|+
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T-----DsGL-----~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl-~Np 278 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET-----DSGL-----QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL-DNP 278 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc-----CccH-----HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh-cCC
Confidence 344445555677777766666652 1111 1246777777654 24466667778888884 567
Q ss_pred chHHHHHHcCChHHHHHhhc----------cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCC--CHHH
Q 004992 282 NIKKEVLAAGALQPVIGLLS----------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQL 349 (720)
Q Consensus 282 ~~~~~~~~~~~l~~L~~ll~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v 349 (720)
.+.-...-..++|.++.++- +.+|.+|--|+..+..++..-...... ....++..+.+.+.++ ....
T Consensus 279 ~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st 357 (576)
T KOG2549|consen 279 NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLST 357 (576)
T ss_pred ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchh
Confidence 76655555677888887764 345889999999999888633222222 4445667777777663 3445
Q ss_pred HHHHHHHHHHHh
Q 004992 350 REMSAFALGRLA 361 (720)
Q Consensus 350 ~~~a~~~L~~l~ 361 (720)
..-++..|..|.
T Consensus 358 ~YGai~gL~~lg 369 (576)
T KOG2549|consen 358 HYGAIAGLSELG 369 (576)
T ss_pred hhhHHHHHHHhh
Confidence 555555554444
No 354
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=51.33 E-value=4.1e+02 Score=30.11 Aligned_cols=102 Identities=23% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~ 286 (720)
.++..|..+..++-+.++..++.+++.|..+.|+.- ..++..+++-|.+++..+...|...|.+|....|..+..
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE-----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE-----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH-----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 466777777788889999999999999987555542 335777889999999999999999999998888876543
Q ss_pred HHHcCChHHHHHhhccC--ChHHHHHHHHHHHHH
Q 004992 287 VLAAGALQPVIGLLSSC--CSESQREAALLLGQF 318 (720)
Q Consensus 287 ~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l 318 (720)
+ +.-+-.++-.+ +......|+..|..+
T Consensus 379 v-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~ 407 (988)
T KOG2038|consen 379 V-----IDEIERLAFRPNVSERAHYYAVIFLNQM 407 (988)
T ss_pred h-----HHHHHHHHcccCccccceeehhhhhhhh
Confidence 3 33344444333 233344455555544
No 355
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=50.51 E-value=47 Score=31.21 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhh
Q 004992 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (720)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll 300 (720)
..+...+...|..++.++..++..+.+. ++.++..+.......-..+..++..+..++......+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 4677899999999999999999888875 55444444433222223456778888888888877765554 88888888
Q ss_pred ccCChHHHHHHHHHHHHHh
Q 004992 301 SSCCSESQREAALLLGQFA 319 (720)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~ 319 (720)
...... ..-+..|..++
T Consensus 152 ~~~gr~--~~~L~~L~~lc 168 (207)
T PF01365_consen 152 RKHGRQ--PRYLDFLSSLC 168 (207)
T ss_dssp -------------------
T ss_pred HHcCCC--hHHHHHHhhhc
Confidence 763321 22344555554
No 356
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.72 E-value=21 Score=35.60 Aligned_cols=64 Identities=8% Similarity=-0.039 Sum_probs=53.3
Q ss_pred HHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHH
Q 004992 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (720)
Q Consensus 135 ~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 204 (720)
+..+.+++|| .+++.++.+.+.|+++.+++-..-++.++ -+++..+-|+.+|...+.++++.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nP------fi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNP------FIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCCh------HHHHHHHHHHHHHHhcchhhHHHHh
Confidence 4677999999 89999999999999999887765444433 8889999999999998888887654
No 357
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=49.52 E-value=6.4e+02 Score=31.76 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=44.9
Q ss_pred CChHHHHHH----hcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 333 GAVRPLIEM----LQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 333 ~~~~~L~~l----l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
..++.++.+ +++.++.++..+......+=. ..+ ......++..|+..+-+++..-...|+.+|..|+.
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~---~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~ 502 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFK---EFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAE 502 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH---SS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh---hcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 344555444 578899999998888887766 222 12233467778777766666666788999999875
No 358
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.39 E-value=2.4e+02 Score=34.28 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHhh
Q 004992 452 VLNHLLYLMRVAEKGVQRRVALALAHL 478 (720)
Q Consensus 452 ~~~~L~~ll~~~~~~v~~~a~~~L~~l 478 (720)
++..+-++..+.++++...+..++..+
T Consensus 1104 ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1104 LLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 455555556667788877777766655
No 359
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=48.38 E-value=69 Score=27.80 Aligned_cols=95 Identities=16% Similarity=0.089 Sum_probs=68.3
Q ss_pred cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHH
Q 004992 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVP 381 (720)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~ 381 (720)
+.+|......|-.+.. .+... ..++..+..-+.+.++.++..|+..|-.+...- +......+...+++..
T Consensus 16 ~~dw~~ileicD~In~----~~~~~-----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNC-G~~fh~evas~~Fl~e 85 (139)
T cd03567 16 EEDWEAIQAFCEQINK----EPEGP-----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNC-GERFHSEVGKFRFLNE 85 (139)
T ss_pred CCCHHHHHHHHHHHHc----CCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-CHHHHHHHHhHHHHHH
Confidence 4567666666665532 11111 125677888889999999999999999998832 3345667788888999
Q ss_pred HHHHhcC------CChhHHHHHHHHHHhccc
Q 004992 382 LLKLLDS------KNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 382 l~~ll~~------~~~~v~~~a~~~L~~l~~ 406 (720)
+++++.. .+..|+..++..+...+.
T Consensus 86 l~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 86 LIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999953 467899999998888764
No 360
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=48.30 E-value=3e+02 Score=28.09 Aligned_cols=66 Identities=11% Similarity=0.175 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcC--ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 201 (720)
.+|..|..++..+...+.....+...+ ++..|++++.....- ..+++..|+.+|..++........
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v-----~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKV-----PMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHHHhccccHHH
Confidence 566667777766666666777777666 899999999876532 238999999999999985554443
No 361
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=47.23 E-value=46 Score=31.30 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=56.2
Q ss_pred cceE-EEEECCeEEehhHHHHhhcch-hHhhcccCCcC--CCCCCceecCCCCHHHHHHHHHHHhcCCcccCh--hhHHH
Q 004992 552 LSDV-TFLVEGRRFYAHRICLLASSD-AFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL--DIAQD 625 (720)
Q Consensus 552 ~~Dv-~~~~~~~~~~~h~~iL~~~s~-~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~--~~~~~ 625 (720)
..|+ .+-++|..|..-..-|...-+ ...+||++... ......+.| |=+-..|+.+++|+-|..+.++. .++..
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHH
Confidence 3444 344555544433332333222 34556654221 111223333 34567899999999996666666 56789
Q ss_pred HHHHHhhhChHHHHHHHHHH
Q 004992 626 LLRAADQYLLEGLKRLCEYT 645 (720)
Q Consensus 626 ll~~A~~~~~~~l~~~c~~~ 645 (720)
+..-|++|+++.+..++.+.
T Consensus 86 L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 86 LVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred HHHHHHHHccccHHHHHhcc
Confidence 99999999999888766543
No 362
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.31 E-value=4.6e+02 Score=29.23 Aligned_cols=250 Identities=17% Similarity=0.151 Sum_probs=123.9
Q ss_pred HhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 75 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
.|+..|.+|-..|..++.+|++..... -+++.++.+ --+..|..+|.++......-....
T Consensus 18 ~D~~~R~~AE~~L~e~s~speclskCq---------lll~~gs~p-----------Ys~mlAst~L~Klvs~~t~lpl~q 77 (1082)
T KOG1410|consen 18 TDPTARHRAEKALAELSESPECLSKCQ---------LLLERGSYP-----------YSQMLASTCLMKLVSRKTPLPLEQ 77 (1082)
T ss_pred CCHHHHHHHHHHHHHHccCHHHHHHHH---------HHHHcCCCc-----------hHHHHHHHHHHHHHcCCCCCcHHH
Confidence 467789999999999999887544321 133443331 344567777777772211111112
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcC--chhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN--SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (720)
..++-..+++.+....+.-.+ -+...-+..++.+.+.. +..+....-.+.+..+.++++.++.+--.-+..+|.
T Consensus 78 rldir~Yilnylat~~Pk~~~----fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLs 153 (1082)
T KOG1410|consen 78 RLDIRNYILNYLATGAPKLAP----FVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILS 153 (1082)
T ss_pred HHHHHHHHHHHHhcCCCCccc----HHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHH
Confidence 223345677777664442221 34444455555555311 111222333467778888888887776667777777
Q ss_pred HhccCChhcHHHHHhCCCHH-----HHHHhhcCCC-HHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHh----hcc
Q 004992 233 TLAFKNDENKNQIVECNALP-----TLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL----LSS 302 (720)
Q Consensus 233 ~L~~~~~~~~~~i~~~g~l~-----~L~~ll~~~~-~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~l----l~~ 302 (720)
.|.. +-+. ..|..| .+..-+++.. -+|-.-++..|......+-.. -.+.|++..++.+ +.-
T Consensus 154 qLvq--emN~----~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd---~~q~~L~~~vL~L~l~Cl~F 224 (1082)
T KOG1410|consen 154 QLVQ--EMNQ----ADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLND---RAQLGLLMQVLKLNLNCLNF 224 (1082)
T ss_pred HHHH--HhhC----CCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCccc---HhHhhHHHHHHHHHhhhccc
Confidence 7774 1110 011111 1111222222 144444555555443111111 1122222222222 210
Q ss_pred -----CChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 303 -----CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 303 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
...+. ..-++++ .-....+..+.+...++.+.++..+-.+..-+.|+.+|..++.
T Consensus 225 DfiGss~DEs----sed~ctV-QIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlAS 284 (1082)
T KOG1410|consen 225 DFIGSSTDES----SEDLCTV-QIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLAS 284 (1082)
T ss_pred cccccccccc----cccccce-ecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHH
Confidence 00000 0000000 0112334455666778888888888788888888888888886
No 363
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=46.23 E-value=38 Score=35.37 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=35.4
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhh
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 696 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~ 696 (720)
+.++|++.++..|.+|..+.|...|++|+..|. +...+|..|+.
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l---~~~naf~~L~q 228 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKNL---MADNAFLELFQ 228 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CChHHHHHHHH
Confidence 578999999999999999999999999998763 33344555544
No 364
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.11 E-value=7.5e+02 Score=31.60 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=65.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHH-HHHHHHHHHhccCcchhhH
Q 004992 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR-EAALLLGQFAATDSDCKVH 328 (720)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~-~a~~~L~~l~~~~~~~~~~ 328 (720)
....++..+...++..+..+..+++.++...+.. ..-.+..+.++.-+.+..+.+.+ --.-+++.+-.........
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 3455566677788888888888998887543321 11223455566666665544433 3333444443221111111
Q ss_pred HHhcCChHHHHHHhcCC-CHHHHHHHHHHHHHHhh
Q 004992 329 IVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQ 362 (720)
Q Consensus 329 ~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~ 362 (720)
-.....+..++.+.+++ +|.|+..++.++.-++.
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~ 988 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILD 988 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHc
Confidence 11123466777777774 56999999999998887
No 365
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=45.89 E-value=75 Score=27.32 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=55.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cchHHHHHHcCChHHHHHhhccCC--hHHHHHHHHHHHHHhc
Q 004992 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAA 320 (720)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~~l~~L~~ll~~~~--~~~~~~a~~~L~~l~~ 320 (720)
++..|.+-++++++.++..|+..|..+.... +.....+....++..|..++.+.. +.++..++..+...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999999887553 446677778889999999888653 3388888888877763
No 366
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=45.13 E-value=1.3e+02 Score=28.65 Aligned_cols=130 Identities=12% Similarity=0.033 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCC---------C-----hh----HHHHHHHHHHhcccC
Q 004992 346 DVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSK---------N-----GS----LQHNAAFALYGLADN 407 (720)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~---------~-----~~----v~~~a~~~L~~l~~~ 407 (720)
+......++..+..|.. .++....+.+.+.++.+.+.+..- + .. +...=...|+.++.+
T Consensus 77 ~~~y~~vGc~L~~~Ll~---~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~ 153 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLS---SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST 153 (226)
T ss_pred chHHHHHHHHHHHHHHc---CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC
Confidence 35667778888888888 677777777888888887777322 1 11 222223567778888
Q ss_pred CCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhc
Q 004992 408 EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 479 (720)
Q Consensus 408 ~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 479 (720)
+.+...+-+.+....+........ -.+.+...+..+.....+..-..|-+.+..++..+|..|..-|..+.
T Consensus 154 ~~Gl~lLe~~~if~~l~~i~~~~~-~~~l~klil~~LDY~~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 154 PNGLKLLERWNIFTMLYHIFSLSS-RDDLLKLILSSLDYSVDGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred hhHHHHHHHCCHHHHHHHHHccCc-hHHHHHHHHhhCCCCCccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 888777777776665544222111 12233334455544445555555666788888999999999887764
No 367
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.58 E-value=36 Score=40.99 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=89.0
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~ 286 (720)
+++|.|..-|.+.+..+|..|...++.+... +...-.=-.......++.-+.+.+.+||..++....+....++.....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~-~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSD-KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 5677777777788899999999999998862 222111011235667777788889999999999998887766654332
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
. +....+-. .+.+++++.....++..+.. ......+... ++..+.+.+++....||..|...|..+-.
T Consensus 338 ~---~~~~~l~~--~~~D~~~rir~~v~i~~~~v--~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 338 S---TILLALRE--RDLDEDVRVRTQVVIVACDV--MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred H---HHHHHHHh--hcCChhhhheeeEEEEEeeh--hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2 11111221 22334443332222111110 1111222222 55666667788899999999998887766
No 368
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=43.95 E-value=5e+02 Score=28.97 Aligned_cols=107 Identities=18% Similarity=0.117 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHH
Q 004992 379 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY 458 (720)
Q Consensus 379 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 458 (720)
+..+-.+++-.++.+|+..=-++.-++.+.+. -.++..|.+
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvSNPq---------------------------------------~~vlDtLsk 682 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ---------------------------------------VNVLDTLSK 682 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc---------------------------------------chHHHHHHH
Confidence 55566777888999999998899888754332 125667888
Q ss_pred HHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhc-CCCchhhhhHHHHHHHHHhhccccc
Q 004992 459 LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKATTLS 527 (720)
Q Consensus 459 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~L~~~~~~~~ 527 (720)
+.++.+.++-.++..+++-+-....+.++. +.+..|.+.-. +.+.-...+.+..|..|-+..-+.+
T Consensus 683 ~shd~D~eva~naIfamGLiGAGTnNARla---~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGtltl~ 749 (878)
T KOG2005|consen 683 FSHDGDLEVAMNAIFAMGLIGAGTNNARLA---QMLRQLASYYYKDSKALFVVRIAQGLVHLGKGTLTLS 749 (878)
T ss_pred hccCcchHHHHHHHHHhccccCCcchHHHH---HHHHHHHHHHhccchhHHHHHHHHHHHHhcCCceecc
Confidence 899999999999999999886665555431 22333333222 2222233446677777766554443
No 369
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=42.74 E-value=2.3e+02 Score=30.91 Aligned_cols=141 Identities=11% Similarity=-0.005 Sum_probs=92.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchh--hHHH
Q 004992 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK--VHIV 330 (720)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~ 330 (720)
.++.-..+-++.+|..+...|+-.....|+ .+..-.++...-..|.+.+..+|.....++..++...+... +.++
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 344445566778888888887777655553 34445577777778888899999999999999997665443 2222
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 004992 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 331 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (720)
...-..+++++..+..-||..++..+..+...+ ..+...+..+..++-+..+.-+......+.++|
T Consensus 356 -eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg--------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~ic 421 (740)
T COG5537 356 -ERFKDRILEFLRTDSDCVRICSIKSLCYLRILG--------VLSSSEILIVSSCMLDIIPDSRENIVESVESIC 421 (740)
T ss_pred -HHHHHHHHHHHhhccchhhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 235567777776655559999998888877622 223334555566665555554444444444444
No 370
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.58 E-value=5.2e+02 Score=31.68 Aligned_cols=218 Identities=18% Similarity=0.176 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC----C---CHHHHHHHHHHHHHhccCChhcHHHHHhCCCHH
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----T---DTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~---~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~ 252 (720)
+++.....++.++.....+ ... .| .+.+.++++. . ...+.+.+-.+|.-++.+.-..-..-.-.+++.
T Consensus 857 evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred eeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 7778888888887763332 222 23 5666665542 1 245566666777766642211111111123455
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHhhcC--------CcchH--------------HHHHHcCC----hHHHHHhhccCCh
Q 004992 253 TLILMLRS-EDSAIHYEAVGVIGNLVHS--------SPNIK--------------KEVLAAGA----LQPVIGLLSSCCS 305 (720)
Q Consensus 253 ~L~~ll~~-~~~~v~~~a~~~L~nL~~~--------~~~~~--------------~~~~~~~~----l~~L~~ll~~~~~ 305 (720)
.+...-+. .|..+--.|+..+|+++.. .+... +.+.-.++ +..|.++-.++..
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~ 1011 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRA 1011 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchH
Confidence 55544432 3445555566666665411 00000 00011122 2233333344557
Q ss_pred HHHHHHHHHHHHHhcc-CcchhhHHHhcCChHHHHHHhcC---------CCHHH----HHHHHHHHHHHhhhhcCcchhh
Q 004992 306 ESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQS---------PDVQL----REMSAFALGRLAQVITDMHNQA 371 (720)
Q Consensus 306 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~---------~~~~v----~~~a~~~L~~l~~~~~~~~~~~ 371 (720)
++|..|+.++..+... +........+.-+...++.+|.. +..++ -+..+.+|.-++.. .+++..
T Consensus 1012 eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl--f~e~fk 1089 (1610)
T KOG1848|consen 1012 EVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL--FSENFK 1089 (1610)
T ss_pred HHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH--HHHHHH
Confidence 7888888888777532 22223323333344555666641 11222 12344445555542 224444
Q ss_pred hhhhcCC--------HHHHHHHhcCCChhHHHHHHHHHHhc
Q 004992 372 GIAHNGG--------LVPLLKLLDSKNGSLQHNAAFALYGL 404 (720)
Q Consensus 372 ~l~~~~~--------i~~l~~ll~~~~~~v~~~a~~~L~~l 404 (720)
.+...++ +..+.+++.+.++++...+..++..+
T Consensus 1090 ~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1090 LLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 4433322 33344444567788877777776665
No 371
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=41.53 E-value=20 Score=20.71 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHh
Q 004992 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK 167 (720)
Q Consensus 132 v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~ 167 (720)
||..|+++|+++.+. ..++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd~----------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP----------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHhc
Confidence 578899999998841 23667776664
No 372
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=41.31 E-value=2.3e+02 Score=24.35 Aligned_cols=142 Identities=19% Similarity=0.101 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCc-hhHHHhhcccccccc
Q 004992 347 VQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQD 425 (720)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~v~~L~~ 425 (720)
+.++...+.++..++... .+.. | ...++.+++++.+ ++......+.+|..+...-.. ...-...
T Consensus 2 ~~i~~kl~~~l~~i~~~~-~P~~---W--p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~-------- 66 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRD-WPQQ---W--PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQ-------- 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTT---S--TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHH--------
T ss_pred hhHHHHHHHHHHHHHHHH-Chhh---C--chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhH--------
Confidence 346777788888888722 1111 1 3467778888776 466666777777777542111 0000000
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcc----hhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhh
Q 004992 426 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE----KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 501 (720)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll 501 (720)
........ .+ ......++..+.+.+.... .++...+..++..+....+... +.+.+.++.+.+++
T Consensus 67 --~r~~~l~~-------~l-~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~-i~~~~~l~~~~~~l 135 (148)
T PF08389_consen 67 --ERRRELKD-------AL-RSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIEL-IINSNLLNLIFQLL 135 (148)
T ss_dssp --HHHHHHHH-------HH-HHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHH-HHSSSHHHHHHHHT
T ss_pred --HHHHHHHH-------HH-HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHH-hccHHHHHHHHHHc
Confidence 00000000 01 1113445666666666543 7888999999999988665443 34567889999988
Q ss_pred cCCCchhhhhHHHHH
Q 004992 502 GSTNPKQQLDGAVAL 516 (720)
Q Consensus 502 ~~~~~~v~~~a~~aL 516 (720)
.+++.+..|+.+|
T Consensus 136 --~~~~~~~~A~~cl 148 (148)
T PF08389_consen 136 --QSPELREAAAECL 148 (148)
T ss_dssp --TSCCCHHHHHHHH
T ss_pred --CCHHHHHHHHHhC
Confidence 5556688888775
No 373
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=40.80 E-value=1e+02 Score=26.67 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhh
Q 004992 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (720)
Q Consensus 131 ~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~ 194 (720)
-++.+.+.++..++ +-|+. -.+.++.+++++..+ . .-....+.+|..+..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~-----Wp~~l~~l~~~~~~~-~--------~~~~~~L~iL~~l~e 54 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ-----WPDFLEDLLQLLQSS-P--------QHLELVLRILRILPE 54 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT-----STTHHHHHHHHHHTT-H--------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhh-----CchHHHHHHHHhccc-h--------hHHHHHHHHHHHHHH
Confidence 57788888888888 32332 234567777777663 1 344455666666553
No 374
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=39.08 E-value=4.1e+02 Score=26.62 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=89.0
Q ss_pred HHHHhCCChHHHHHhhcCCCCcccccC------------CCcchHHHHHHHHHHHHHhccChhhHHHH------------
Q 004992 98 NWIVEGGAVPALVKHLQAPPTSEADRN------------LKPFEHEVEKGSAFALGLLAVKPEHQQLI------------ 153 (720)
Q Consensus 98 ~~~~~~g~i~~L~~ll~~~~~~~~~~~------------~~~~~~~v~~~a~~~L~~L~~~~~~~~~~------------ 153 (720)
..+.+.|.||.|-++++.-.|....-. ..| +..++.+-++.+.++|+...+....
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp-~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSP-DTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccch-hHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 467889999999988876555321110 111 1258889999999999533222111
Q ss_pred ----------HHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCch--hhHHHHhcCCcHHHHHhhcCC--
Q 004992 154 ----------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS--IKTRVRMEGGIPPLVELLEFT-- 219 (720)
Q Consensus 154 ----------~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~ll~~~-- 219 (720)
-+.|.+..++..+.....+. ..+-.-+.++-.+..+.+. -+..+...|.++.++.-+-++
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s------~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~ 155 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDS------SYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGC 155 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCch------hHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCcc
Confidence 12466777777776554432 5667777777777765554 344667778888888766433
Q ss_pred -CHHHHHHHHHHHHHhccCChhc
Q 004992 220 -DTKVQRAAAGALRTLAFKNDEN 241 (720)
Q Consensus 220 -~~~v~~~a~~~L~~L~~~~~~~ 241 (720)
+..+....-..|+.|...+...
T Consensus 156 ~~~~v~Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 156 MSQEVLQSNFDLLGELIKFNRDA 178 (303)
T ss_pred chHHHHHHHHHHHHHHHCCCHHH
Confidence 3568888888899888766444
No 375
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=38.83 E-value=38 Score=24.16 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=37.4
Q ss_pred HHhhcCCcccchhhhccCcHHHHHHhhcC-CCchhhhhHHHHHHHHHhhc
Q 004992 475 LAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 475 L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~L~~~~ 523 (720)
|..||....++..+.+.|+-+.|..+-.. ++++++...-....-|..+.
T Consensus 2 LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE 51 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDE 51 (58)
T ss_pred HhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 55677888899999999999999988776 67778877666655555543
No 376
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=38.26 E-value=45 Score=27.25 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=33.5
Q ss_pred HHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCC
Q 004992 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD 171 (720)
Q Consensus 134 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 171 (720)
......|..|+..|+.-..++..|+++.|+.+|.+.+.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 45677888899999999999999999999999988766
No 377
>PHA03098 kelch-like protein; Provisional
Probab=37.95 E-value=74 Score=35.14 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 681 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 681 (720)
++.+|+.+++..|..+..+.|++.|.+|+.++
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYIIKI 104 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999864
No 378
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=37.90 E-value=2.1e+02 Score=30.89 Aligned_cols=112 Identities=10% Similarity=-0.040 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhccccch--HHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHH
Q 004992 57 SEVSAQVNVLNTTFSWL--EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~--~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~ 134 (720)
..+|.++.++...++.. ..|-......++.+..|..++...-.-.-+..+|.++.++-+... +.......++.+|.
T Consensus 239 ~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l--~~~p~~dnhwaLRD 316 (576)
T KOG2549|consen 239 QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNL--CLRPELDNHWALRD 316 (576)
T ss_pred HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhc--cCCccccchHHHHH
Confidence 35667777777766544 456667778888888888876544333334577888776643322 11111223458999
Q ss_pred HHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCC
Q 004992 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMD 171 (720)
Q Consensus 135 ~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~ 171 (720)
-|+..+..++ +....-.. ....++..+.+.+.+...
T Consensus 317 fAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~ 353 (576)
T KOG2549|consen 317 FAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKK 353 (576)
T ss_pred HHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCC
Confidence 9999999999 33333222 344556666666666543
No 379
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=35.22 E-value=4.4e+02 Score=28.97 Aligned_cols=145 Identities=11% Similarity=0.032 Sum_probs=85.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHH
Q 004992 336 RPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 415 (720)
Q Consensus 336 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 415 (720)
..++.-..+-++.+|..+...|.-... ..| ..+....++...--.|.+.+..+|.....++..|+...++...+.
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~--lvP---~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir 352 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIG--LVP---DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIR 352 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHh--cch---HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444566677888888777776665 122 233333455555556677889999999999999987655533221
Q ss_pred hhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHH
Q 004992 416 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE 495 (720)
Q Consensus 416 ~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 495 (720)
+ +-..+..++++.+..+..-||..+.+.++.+..-. ..+...+.
T Consensus 353 ~-------------------------------f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg-----~L~~SeIl 396 (740)
T COG5537 353 R-------------------------------FVERFKDRILEFLRTDSDCVRICSIKSLCYLRILG-----VLSSSEIL 396 (740)
T ss_pred H-------------------------------HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhc-----ccchhHHH
Confidence 1 11235556677766665558888888887774322 12223344
Q ss_pred HHHHhhcCCCchhhhhHHHHHHHHHh
Q 004992 496 LLLGLLGSTNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 496 ~L~~ll~~~~~~v~~~a~~aL~~L~~ 521 (720)
.+..++-+..|+-+..-.+.+.++++
T Consensus 397 IvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 397 IVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 55556666666544444444444443
No 380
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=35.09 E-value=4.3e+02 Score=25.64 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=48.4
Q ss_pred hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCC--hHHHHHHHHHHHHHhccCcc
Q 004992 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSD 324 (720)
Q Consensus 247 ~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~ 324 (720)
+..+++.++++++.++..+- ..++......-...-..+-.|-++.|..++.+++ .-+|..|+.+|..++...+.
T Consensus 71 e~~A~~~li~l~~~~~~~~~----~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLE----DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcchHH----HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 45689999999976554211 1112211100001112223566777888888764 45788899999999887777
Q ss_pred hhhHHHh
Q 004992 325 CKVHIVQ 331 (720)
Q Consensus 325 ~~~~~~~ 331 (720)
.+..+++
T Consensus 147 ~Re~vi~ 153 (249)
T PF06685_consen 147 SREEVIQ 153 (249)
T ss_pred CHHHHHH
Confidence 6766654
No 381
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=34.87 E-value=7e+02 Score=28.05 Aligned_cols=116 Identities=10% Similarity=-0.000 Sum_probs=79.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHH
Q 004992 379 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY 458 (720)
Q Consensus 379 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 458 (720)
+..+.+++++.+..+|-..+.+..|+..+-..-..+.++- ...-...+..|.+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~---------------------------~~~~~~Lv~ll~E 353 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHY---------------------------KQKLNDLVGLLVE 353 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhH---------------------------HHHHHHHHHHHHH
Confidence 5678899999999999999999999875422211222210 0011235556667
Q ss_pred HHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 459 LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 459 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
-+.+..|-+|..|...+..++.-+..... ....++......+.+...-||..|...+..|.-.
T Consensus 354 Rl~D~~py~RtKalqv~~kifdl~sk~~~-~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 354 RLSDTYPYTRTKALQVLEKIFDLNSKTVG-RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred HhhccchHHHHHHHHHHHHHHhCcccccc-hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 77888999999999988888765441110 1234456667788899999999999999887743
No 382
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.59 E-value=3.4e+02 Score=28.15 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=76.0
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHH
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~ 287 (720)
-+.-|+..+++.+..+|..|+.-|..+-...+.....-. ..+++.+..+..+.+..+|.....++-++....-......
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~-~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHL-YALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHH-HHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 356677788899999999999988887754344333222 2367788888888999999888888888643222111111
Q ss_pred HHcCChHHHHHhhccCChHHHHHHHHHHHHHhccC
Q 004992 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (720)
Q Consensus 288 ~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 322 (720)
.-.=+++.+...+.+..++++..+...+.-+....
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 11123445555566677889999888888887544
No 383
>PLN03205 ATR interacting protein; Provisional
Probab=34.34 E-value=5.4e+02 Score=26.58 Aligned_cols=178 Identities=11% Similarity=0.074 Sum_probs=91.0
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhc---cCcchhhHHHhcCChHHHHHHh-----cCCCHHHHHHHHHHHHHHhhh
Q 004992 292 ALQPVIGLLSSCCSESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEML-----QSPDVQLREMSAFALGRLAQV 363 (720)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L~~ll-----~~~~~~v~~~a~~~L~~l~~~ 363 (720)
++..|+++..-++..+...++++|..+-. ++......-.+.+.+. |.+++ ......++..|+..+.-+...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHS-LFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHH-HHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 34556666655555555555555443321 1222111112222222 22222 345677888888877766652
Q ss_pred hcCcchhhhhhhcCCHHHHHHHhc-CCChhHHHHHHHHHHhcccCCCchhHHHhhcccc-cccc-hhhh--hhhhHHHHH
Q 004992 364 ITDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ-KLQD-GEFI--VQATKDCVA 438 (720)
Q Consensus 364 ~~~~~~~~~l~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~-~L~~-~~~~--~~~~~~~~~ 438 (720)
......+..+....+.+.+.++|+ .....|++.++..|.-|...+.-...+. .|--+ ...+ .+.. ......
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFc-Sg~~e~~~ad~eNd~~~n~st~k--- 478 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFD-SLHEEKNSSDTENDSEGNFFALE--- 478 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHh-cCCccccccccccccccccccHH---
Confidence 111223455655566778888884 4567899999988887765554433333 22111 1110 0000 000000
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhc-----chhHHHHHHHHHHhhcCCcc
Q 004992 439 KTLKRLEEKIHGRVLNHLLYLMRVA-----EKGVQRRVALALAHLCSPDD 483 (720)
Q Consensus 439 ~~~~~l~~~~~~~~~~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~ 483 (720)
. -+.++.-|-+++..+ +.+.+..+...|..++....
T Consensus 479 ----~-----fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 479 ----A-----FGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred ----H-----HHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 0 112344455555432 56778889999999977654
No 384
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=33.63 E-value=62 Score=28.11 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=55.7
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
++..|..-|.+.+. .++..|+.+|-.+. .++.++..+....++..|..++......... .|+
T Consensus 43 a~~~l~krl~~~~~------------~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~----~Vk 106 (140)
T PF00790_consen 43 AARALRKRLKHGNP------------NVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPET----PVK 106 (140)
T ss_dssp HHHHHHHHHTTSSH------------HHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHS----HHH
T ss_pred HHHHHHHHHhCCCH------------HHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchh----HHH
Confidence 44566677777666 89999999999888 3478888888888999999999876553200 288
Q ss_pred HHHHHHHHHhhh
Q 004992 183 RRAADAITNLAH 194 (720)
Q Consensus 183 ~~a~~~L~~l~~ 194 (720)
..++..+.....
T Consensus 107 ~k~l~ll~~W~~ 118 (140)
T PF00790_consen 107 EKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877764
No 385
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=32.99 E-value=3.2e+02 Score=23.60 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=56.1
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhccC-cchhhHHHhcCChHHHHHHhcC-CCHH---HHHHHHHHHHHHhh
Q 004992 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS-PDVQ---LREMSAFALGRLAQ 362 (720)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~-~~~~---v~~~a~~~L~~l~~ 362 (720)
++..|..-|.++++.++..|+.+|-.+..++ +.....+....++..|..++.+ .... |++.++..+...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4667888888999999999999999888755 3555666677788889888764 3333 89999999988887
No 386
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=32.22 E-value=6.5e+02 Score=26.88 Aligned_cols=150 Identities=18% Similarity=0.195 Sum_probs=65.1
Q ss_pred HhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHh--CCCHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCC
Q 004992 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSS 280 (720)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~--~g~l~~L~~-ll~~~~~~v~~~a~~~L~nL~~~~ 280 (720)
.+...+|.+...|..+-.+..-.+..+|+.|.+..+ ...+-+ ...++.|+. .+......+ -..++.|..+....
T Consensus 114 ~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~--~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~ 190 (435)
T PF03378_consen 114 FEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP--SSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKD 190 (435)
T ss_dssp HHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhC
Confidence 345677888888887766777777788887775333 111111 112333321 111111112 23344555544332
Q ss_pred cchHHHHHHcCChHHHHH----hhccCChHHHHHHHHHHHHHhccCcch-hhHHHhcCChHHHHHHhc-CCCHHHHHHHH
Q 004992 281 PNIKKEVLAAGALQPVIG----LLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEMLQ-SPDVQLREMSA 354 (720)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~----ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~ 354 (720)
+. .+...+-+..++. ++.+...+ ..+...|..+....+.. ....+ ..++..++.-|+ +..++....-+
T Consensus 191 ~~---~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv 264 (435)
T PF03378_consen 191 PS---FIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFV 264 (435)
T ss_dssp GG---G----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHH
T ss_pred ch---hhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHH
Confidence 32 1233344444444 44444322 33455555554332221 11111 124444444454 45566666666
Q ss_pred HHHHHHhh
Q 004992 355 FALGRLAQ 362 (720)
Q Consensus 355 ~~L~~l~~ 362 (720)
..++.++.
T Consensus 265 ~F~~~~~~ 272 (435)
T PF03378_consen 265 VFLSLFAI 272 (435)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
No 387
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=31.79 E-value=33 Score=34.77 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=45.1
Q ss_pred chhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhc-CCcc------------cChhhHHHHHHHHhhhChHHHHHH
Q 004992 575 SDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT-GSVD------------VTLDIAQDLLRAADQYLLEGLKRL 641 (720)
Q Consensus 575 s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~------------~~~~~~~~ll~~A~~~~~~~l~~~ 641 (720)
++-|+.++.. -.++.+.+.++..+.+-.+|..... |-.+ +..+++..++.+|..|++++|.++
T Consensus 93 ~eAF~~lLrY----iYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~ 168 (620)
T KOG4350|consen 93 SEAFRALLRY----IYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDY 168 (620)
T ss_pred HHHHHHHHHH----HhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHH
Confidence 4455555432 1234677777766665555544422 1111 234677788999999999999999
Q ss_pred HHHHHHhc
Q 004992 642 CEYTIAQD 649 (720)
Q Consensus 642 c~~~l~~~ 649 (720)
|..|+-++
T Consensus 169 C~mfmDrn 176 (620)
T KOG4350|consen 169 CMMFMDRN 176 (620)
T ss_pred HHHHHhcC
Confidence 99887653
No 388
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=31.20 E-value=1.2e+02 Score=23.63 Aligned_cols=66 Identities=18% Similarity=0.314 Sum_probs=42.3
Q ss_pred HhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh----cCCChhHHHHHHHHHH
Q 004992 330 VQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALY 402 (720)
Q Consensus 330 ~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll----~~~~~~v~~~a~~~L~ 402 (720)
.+..++.++..++.. .+.++|+..+.++.++... +...+ .+| -+.+...+ .+.+..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~-----~~~~i-~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQS-----RGENI-KSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH-----hHHHH-Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 445567788887644 6889999999999999981 11222 334 33333333 4556777777666654
No 389
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=31.03 E-value=2.7e+02 Score=24.41 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=15.7
Q ss_pred HHHHHHhhcCCCchhhhhHHHHHHH
Q 004992 494 LELLLGLLGSTNPKQQLDGAVALFK 518 (720)
Q Consensus 494 ~~~L~~ll~~~~~~v~~~a~~aL~~ 518 (720)
+..|+.++.++++++...|+.+|.+
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 6677777777777777777776664
No 390
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=31.02 E-value=5.8e+02 Score=25.89 Aligned_cols=180 Identities=12% Similarity=0.121 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHH-hhcC--------CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCC
Q 004992 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (720)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~-ll~~--------~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~ 292 (720)
.+++..+..+..... .......+.+ ..+|.++. .|.+ .+++|......++..+-.........+. ..+
T Consensus 42 ~iKkeIL~Li~t~i~-~~~~~~~v~~-~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~-~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFIS-KAEDPEEVAN-NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQIL-EAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHH-T-S-HHHHHH-HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHh-ccCCHHHHHH-HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHH-HHH
Confidence 456666666666664 2333344444 47777776 4432 3567766666666666543333334444 346
Q ss_pred hHHHHHhhccC---ChHHHHHHHHHHHHHhccCcchhhHHHh---cCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcC
Q 004992 293 LQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITD 366 (720)
Q Consensus 293 l~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (720)
+...+.++..+ -|+.|..--..|.++...+......+-. ..++..++-.+++...++.+.++.++..+......
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 67777777653 4788888888888776532221111100 12455566667889999999999999999874322
Q ss_pred --cchhhhhhhcCCHHH---HHHHh-cCCChhHHHHHHHHHHhc
Q 004992 367 --MHNQAGIAHNGGLVP---LLKLL-DSKNGSLQHNAAFALYGL 404 (720)
Q Consensus 367 --~~~~~~l~~~~~i~~---l~~ll-~~~~~~v~~~a~~~L~~l 404 (720)
++....+.....+.. +...+ .+.+...-..-+.+|.+|
T Consensus 199 ~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~L 242 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNL 242 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 223334544443333 33333 233333333333455554
No 391
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=30.80 E-value=86 Score=24.89 Aligned_cols=57 Identities=11% Similarity=-0.016 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHh
Q 004992 129 EHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (720)
Q Consensus 129 ~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l 192 (720)
++.+|+.|+.+|..++ ..... ..-....++..+.+.+.++..+. ...-.|+..|..+
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~-~~~L~~Ri~~tl~k~l~d~~~~~------~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSS-YPTLQPRITRTLLKALLDPKKPL------GTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHH
Confidence 4599999999999999 21111 11122345677777777665532 5666677777766
No 392
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=30.55 E-value=5e+02 Score=30.03 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=68.8
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchh-h
Q 004992 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQ-A 371 (720)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~ 371 (720)
...+...+.+++.......+.++.+++.-..-.... ...-.+.-..-....-..++.....+|..++.. .+... .
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~--~~~~L~~ 518 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDF--DPSHLKE 518 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHH
Confidence 345555555666666777777777775322111111 111222222222333345677788888888872 33333 3
Q ss_pred hhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 372 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 372 ~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
.+.+.+....+..++-+++.++...|...|.....
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 45566888899999999999999999999999985
No 393
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=30.20 E-value=3e+02 Score=24.21 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=86.3
Q ss_pred CcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh-cCCChhHHHHHHH
Q 004992 322 DSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAF 399 (720)
Q Consensus 322 ~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~ 399 (720)
++..-+.+.+.+++..+++.++. ....++...+..+.-|.+..+.+..-..+...+.+..++..- .-.+.++...=..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 34556678888999999999977 678899999999999998655555566677888888877755 3356677777677
Q ss_pred HHHhccc--CCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHh
Q 004992 400 ALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 477 (720)
Q Consensus 400 ~L~~l~~--~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 477 (720)
.|..|+. ++.....+..... ..-.++..-+++..+++.-+|.++-..+.+
T Consensus 95 fLK~lSlkln~~tv~fffn~~~----------------------------~~FPL~~~aikf~~h~d~Mvr~avR~i~Ln 146 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERN----------------------------DSFPLYTEAIKFYNHPDSMVRTAVRTITLN 146 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCC----------------------------CCCCcHHHHHHhhcCcchHHHHHHHHHHHh
Confidence 7777764 3333333332110 011234445667778888887776666555
Q ss_pred h
Q 004992 478 L 478 (720)
Q Consensus 478 l 478 (720)
+
T Consensus 147 i 147 (149)
T PF09758_consen 147 I 147 (149)
T ss_pred h
Confidence 4
No 394
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=29.78 E-value=2.3e+02 Score=23.89 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=31.0
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHc
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~ 156 (720)
++..|.+=|++.+. .|+..++.+|..++ +++.++..+...
T Consensus 39 i~d~L~kRL~~~~~------------hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 39 LLEYLLKRLKRSSP------------HVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHHHhcCCCC------------cchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 45667777777665 89999999999999 667777776654
No 395
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=28.57 E-value=3.1e+02 Score=27.94 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=62.7
Q ss_pred eEEEEECCeEEehhHHHHhhcchhHhhcccCCcCC----CCCCceecCCCCHHHHHHHHHHHhcCCcccChhhHHHHH--
Q 004992 554 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE----KDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL-- 627 (720)
Q Consensus 554 Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e----~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll-- 627 (720)
-+.+.+.|+.|...|.-|-- |=..++.+.-+| ..++++-+ |-+|+.|+.+|.|--||++..+......-+
T Consensus 41 ~lvlNvSGrRFeTWknTLer---yPdTLLGSsEkeFFy~~dt~eYFF-DRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDe 116 (632)
T KOG4390|consen 41 LLVLNVSGRRFETWKNTLER---YPDTLLGSSEKEFFYDEDTGEYFF-DRDPDIFRHVLNFYRTGKLHYPRHECISAYDE 116 (632)
T ss_pred EEEEeccccchhHHHhHHHh---CchhhhCCcchheeecCCcccccc-cCChHHHHHHHHHhhcCcccCchHHHHHHhhh
Confidence 35677789999999998874 334444433221 23334433 568999999999999999998765443222
Q ss_pred HHHhhhChHHHHHHHHHHHHhcCChhhHHHHH
Q 004992 628 RAADQYLLEGLKRLCEYTIAQDISLENVSSMY 659 (720)
Q Consensus 628 ~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~ 659 (720)
++|-+=.+|+|..-|+.-=.+.-..+|+-.+.
T Consensus 117 ELaF~Gl~PeligDCCyEeYkDrkrENaERL~ 148 (632)
T KOG4390|consen 117 ELAFYGLVPELIGDCCYEEYKDRKRENAERLQ 148 (632)
T ss_pred hhhHhcccHHHHhhhhhHHHhhhhhhhHHHhh
Confidence 23433446888877754332323344444443
No 396
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.49 E-value=2.3e+02 Score=23.42 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=46.5
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
++..|..-|.+.++ .++..|+.+|-.+. .++.+...+....++..++.+....... ......|+
T Consensus 38 ~~~~l~kRl~~~~~------------~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~--~~~~~~Vr 103 (115)
T cd00197 38 AVDAIKKRINNKNP------------HVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG--DDVSTNVR 103 (115)
T ss_pred HHHHHHHHhcCCcH------------HHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc--CCCChHHH
Confidence 44556666666666 89999999999999 6678888887776666555541111100 01122777
Q ss_pred HHHHHHHHHh
Q 004992 183 RRAADAITNL 192 (720)
Q Consensus 183 ~~a~~~L~~l 192 (720)
..+...+...
T Consensus 104 ~k~~~l~~~w 113 (115)
T cd00197 104 EKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHH
Confidence 7777766544
No 397
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=28.48 E-value=63 Score=18.99 Aligned_cols=28 Identities=39% Similarity=0.412 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC
Q 004992 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (720)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~ 260 (720)
.+|..++.+|+++.. + ..++.|+..+++
T Consensus 2 ~vR~~aa~aLg~~~~--~---------~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD--E---------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC--H---------hHHHHHHHHhcC
Confidence 478899999998863 2 245556665544
No 398
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=28.26 E-value=63 Score=32.32 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=42.7
Q ss_pred hhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc---------------cchhhhccCcHHHHHHhhc
Q 004992 448 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---------------QRTIFIDGGGLELLLGLLG 502 (720)
Q Consensus 448 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~~~L~~ll~ 502 (720)
....++..++.-+.+.+...|..|+++|..++.+.- |...+.+.|+++.|..++.
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 355688889999999999999999999999986541 4455667777777777665
No 399
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.59 E-value=2.2e+02 Score=33.07 Aligned_cols=94 Identities=15% Similarity=0.075 Sum_probs=66.5
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhc----cCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLA----FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~----~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~ 282 (720)
.++.....+|.+++..+|..++.+|.... ..++..-..+ +...|.++..+...++-+...|+.+|.+++....+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv--hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV--HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH--HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 34555667888999999999998887433 2111222222 34688899999999999999999999999877666
Q ss_pred hHHHHHHcCChHHHHHhhcc
Q 004992 283 IKKEVLAAGALQPVIGLLSS 302 (720)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~~ 302 (720)
....-.-..++|.+-.++.+
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55544455677777766654
No 400
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=27.49 E-value=58 Score=34.34 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=46.1
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 004992 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~ 277 (720)
...+-.+....+++++..+..++.+++.+. +++.... +..+-..++.++..+.+++-+.+..++.-+.
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~-~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCL-ENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecc-cccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 344445556788999999999999999844 4444333 3445556677777777777666666666664
No 401
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=27.28 E-value=6.1e+02 Score=24.93 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=40.9
Q ss_pred ChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc-chhHH
Q 004992 390 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQ 468 (720)
Q Consensus 390 ~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-~~~v~ 468 (720)
+..+.+.++..++|+..-++....-...+ .+ ....-.-+......++...|+.+..+. ..+..
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~---------------~~-~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~ 196 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSD---------------ED-SSLHDQLIWALFESGVLDLLLTLASSPQESDFN 196 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccc---------------hh-HHHHHHHHHHHHHcCHHHHHHHHHhCccccchh
Confidence 45677888899999966544321111100 00 000011222345667777888777766 33444
Q ss_pred HHHHHHHHhhcCCcc
Q 004992 469 RRVALALAHLCSPDD 483 (720)
Q Consensus 469 ~~a~~~L~~l~~~~~ 483 (720)
...+.++..+..+.+
T Consensus 197 ~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 197 LLLLEIIYLLFKGQD 211 (266)
T ss_pred hHHHHHHHHHHcCCC
Confidence 456666666655543
No 402
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.00 E-value=9.7e+02 Score=27.22 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCC
Q 004992 51 ARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118 (720)
Q Consensus 51 ~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 118 (720)
+-+++...+..++..|...+ ...+.+...+-.|..=+..|..|..+...|++..+++.|-+...
T Consensus 326 eYqe~~dd~~yiLStlq~~~----~~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~ 389 (865)
T KOG2152|consen 326 EYQEFTDDLEYILSTLQSAL----LPMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHE 389 (865)
T ss_pred chhhhhhhHHHHHhhhhhcc----ccHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhcccc
Confidence 34445556666666666552 22223444444444444469999999999999999998877654
No 403
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=26.72 E-value=5.8e+02 Score=29.11 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHHhh
Q 004992 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 304 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 362 (720)
.+..|..++..|+.+....+...-.+.+..+++.|+..|.. .+..+...|+.+|..|.-
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 35678899999999998778888888999999999999864 677888888888887776
No 404
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=26.66 E-value=1e+03 Score=27.46 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=71.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHH-
Q 004992 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV- 330 (720)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~- 330 (720)
..+...+..++.......+.++.++..-..-..+. ...-++.-..-.+..-..+....+.+|..++..++.....++
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 34445555677777778888888886332211111 111222222222222345677788899999877776655544
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 331 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
+.+....++.++-+++.++.++|...|.....
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 46888999999999999999999999998775
No 405
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=26.65 E-value=3.9e+02 Score=28.46 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=56.9
Q ss_pred ceEEEEECCeEEehhHHHHhhcch----hHhhcccC-------CcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChh
Q 004992 553 SDVTFLVEGRRFYAHRICLLASSD----AFRAMFDG-------GYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 621 (720)
Q Consensus 553 ~Dv~~~~~~~~~~~h~~iL~~~s~----~f~~~~~~-------~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~ 621 (720)
.-+.+.+||..+...+..|..... -|...-+. +.-....+++.+ |=+|..|..+++|.+||++..+.+
T Consensus 31 ~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF-DR~P~~F~~Vl~fYrtGkLH~p~~ 109 (477)
T KOG3713|consen 31 RRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF-DRHPGAFAYVLNFYRTGKLHVPAD 109 (477)
T ss_pred cEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeee-ccChHHHHHHHHHHhcCeeccccc
Confidence 357788899888887777664211 11111100 001122334444 348999999999999999997654
Q ss_pred h-HHHHHHHHhhhChHH--HHHHHHHHHHhcC
Q 004992 622 I-AQDLLRAADQYLLEG--LKRLCEYTIAQDI 650 (720)
Q Consensus 622 ~-~~~ll~~A~~~~~~~--l~~~c~~~l~~~i 650 (720)
. ......=-++|+++. +-..|.....++.
T Consensus 110 vC~~~F~eEL~yWgI~~~~le~CC~~~~~~~~ 141 (477)
T KOG3713|consen 110 VCPLSFEEELDYWGIDEAHLESCCWMRYRQRR 141 (477)
T ss_pred cchHHHHHHHHHhCCChhhhhHHhHHHHhhcH
Confidence 3 334444557788765 4455555554433
No 406
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=26.61 E-value=1.6e+02 Score=25.83 Aligned_cols=124 Identities=13% Similarity=0.184 Sum_probs=80.0
Q ss_pred hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc---cChhhHHHHHHcCChHHHHHHHhccC
Q 004992 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA---VKPEHQQLIVDNGALSHLVNLLKRHM 170 (720)
Q Consensus 94 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~---~~~~~~~~~~~~~~l~~L~~lL~~~~ 170 (720)
++.-+.+.+...+..++++++..... .++.+.++++.-+. .++..--.+...+.+..++..--+-+
T Consensus 16 ~~~Fd~F~E~nil~~f~~il~~~~~~-----------~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~ 84 (149)
T PF09758_consen 16 PSFFDFFMEKNILSTFVRILKQSRSS-----------SVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFS 84 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCh-----------HHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCC
Confidence 45666777888999999999883221 78888888887777 23333333455667777766554444
Q ss_pred CCccchhhhHHHHHHHHHHHHhhhc-CchhhHHHHh--cCCcHHH---HHhhcCCCHHHHHHHHHHHHHhc
Q 004992 171 DSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRM--EGGIPPL---VELLEFTDTKVQRAAAGALRTLA 235 (720)
Q Consensus 171 ~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~--~~~i~~L---~~ll~~~~~~v~~~a~~~L~~L~ 235 (720)
++ |+...=+..|..++.. ++..-..+.. .+-.|.+ +++..+++.-+|.++-.++.++.
T Consensus 85 ~e-------e~l~yYIsfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 85 DE-------EVLSYYISFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred cc-------hhHHHHHHHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 43 8999999999998843 2222222222 2344544 55667888888887777666653
No 407
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.41 E-value=1.4e+02 Score=26.80 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=54.6
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhh--cCCHHHHHH-HhcCCC--hhHHHHHHHHHH
Q 004992 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAH--NGGLVPLLK-LLDSKN--GSLQHNAAFALY 402 (720)
Q Consensus 328 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~--~~~i~~l~~-ll~~~~--~~v~~~a~~~L~ 402 (720)
.+++..+.+.+++.+.+.++.+-..+++.+..+.. ..+..+.. .-.+..+.. ++.+++ ...|..++.++.
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~-----~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~ 142 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLS-----RFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILR 142 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence 34455677888888877778999999999999987 22222221 123444444 555443 467888999999
Q ss_pred hcccCCCchhHH
Q 004992 403 GLADNEDNVADF 414 (720)
Q Consensus 403 ~l~~~~~~~~~l 414 (720)
.++.++.....+
T Consensus 143 ~l~~~p~~l~~l 154 (168)
T PF12783_consen 143 ELCKDPQFLVDL 154 (168)
T ss_pred HHHhChhHHHHH
Confidence 999887654443
No 408
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=26.38 E-value=4e+02 Score=22.53 Aligned_cols=71 Identities=7% Similarity=0.012 Sum_probs=45.2
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcC--CHHHHHHHhcCC--------ChhHHHHHHHHHHh
Q 004992 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNG--GLVPLLKLLDSK--------NGSLQHNAAFALYG 403 (720)
Q Consensus 334 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~--~i~~l~~ll~~~--------~~~v~~~a~~~L~~ 403 (720)
++..|.+-|++.++-|+..++.+|..++..+ +.....+...+ .|..+...-..+ +..||..|-.++..
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G--~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG--NSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhC--CHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 5677888888888999999999999999843 33333333322 233333333212 34678888777776
Q ss_pred ccc
Q 004992 404 LAD 406 (720)
Q Consensus 404 l~~ 406 (720)
|..
T Consensus 117 if~ 119 (122)
T cd03572 117 IFS 119 (122)
T ss_pred Hhc
Confidence 654
No 409
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=26.34 E-value=50 Score=34.75 Aligned_cols=71 Identities=23% Similarity=0.304 Sum_probs=50.7
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
....+-.+....++++++++..++.+++......+..+....+-..++.++..+.+++-+.+..++.-+..
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 34444445556789999999999999986443334334445566777888888888888888888877665
No 410
>PHA02713 hypothetical protein; Provisional
Probab=26.34 E-value=85 Score=34.86 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=30.9
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 004992 649 DISLENVSSMYELSEAFHAISLRHTCILYIMEH 681 (720)
Q Consensus 649 ~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 681 (720)
.++.+|+.+++..|..+..+.+.+.|.+|+.++
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 488999999999999999999999999999864
No 411
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=25.64 E-value=2.8e+02 Score=28.28 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHccChhhHHHHHhCC--ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHH
Q 004992 79 AAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (720)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~ 151 (720)
+|..|+..+..+...+.....+...+ .+.-|+++++.... ....+|..|+.+|..++ ......+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~---------v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEK---------VPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCC---------CCHHHHHHHHHHHHHHHhccccHHH
Confidence 45555555555555666667777776 99999999987653 22389999999999999 4444433
No 412
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=25.26 E-value=7.2e+02 Score=25.12 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHhhcCCcchHHHHHHc-----------CChHHHHHhhc------cCChHHHHHHHHHHHHHhccCcc
Q 004992 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAA-----------GALQPVIGLLS------SCCSESQREAALLLGQFAATDSD 324 (720)
Q Consensus 262 ~~~v~~~a~~~L~nL~~~~~~~~~~~~~~-----------~~l~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~ 324 (720)
.-++|..|+.++.....++++.+..+++. .....|+..|- +.++--.--|+.++..+...++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 34789999999999998888887777642 11223444443 22332333577777788776666
Q ss_pred hhhHHHhc------------CChHHHHHHhc-----CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcC-CHHHHHHHh
Q 004992 325 CKVHIVQR------------GAVRPLIEMLQ-----SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNG-GLVPLLKLL 386 (720)
Q Consensus 325 ~~~~~~~~------------~~~~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~-~i~~l~~ll 386 (720)
.+..+..- ..++.+..+|. +.++.++..-+..|..... +++..-..+...+ .++.|+...
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~--e~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLF--ECPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHT--T-HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHh--CCHHHHHHHHcCcchHHHHHHHh
Confidence 65543321 13445555553 3467777777777766665 3555556666554 688888876
Q ss_pred c---CCChhHHHHHHHHHHhcc
Q 004992 387 D---SKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 387 ~---~~~~~v~~~a~~~L~~l~ 405 (720)
. +.+..|+.-++..|+-+-
T Consensus 209 ~~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHHHHHHHHHHH
Confidence 2 335667766666666653
No 413
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.81 E-value=1.1e+03 Score=27.14 Aligned_cols=292 Identities=13% Similarity=0.073 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHccC---hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHH
Q 004992 77 RAAAKRATHVLAELAKN---EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (720)
Q Consensus 77 ~~~~~~a~~~L~~l~~~---~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 153 (720)
..+|.+.++.++...+. .+.+.. +...+++++++.+.- -|+..+++++.-..++-++...-
T Consensus 501 RiiRRRVa~ilg~Wvsvq~~~e~k~l-----~Y~a~lnLL~d~~D~-----------vV~Ltt~~tlkl~vDD~nF~~ds 564 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQKLELKPL-----LYCAFLNLLQDQNDL-----------VVRLTTARTLKLVVDDWNFSEDS 564 (978)
T ss_pred hHHHHHHHHHHhhhhheechHhHHHH-----HHHHHHHhcCccccc-----------eeehHHHHHHHHhhhhccCChhh
Confidence 34677788888877662 233333 345678888776331 67888888888777554443321
Q ss_pred H---HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCc-hhhHHHHhcCCcHHHHHhhc--CCCHHHHHHH
Q 004992 154 V---DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLE--FTDTKVQRAA 227 (720)
Q Consensus 154 ~---~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a 227 (720)
. -.+....+.++++....- +.+...+..|..+..... ..+.. ...+++.+-.+-+ .+.+-++.+.
T Consensus 565 Flp~lenlf~~lfkll~~~~e~-------Dtk~~VL~~ls~lI~r~~e~I~P~--~~~ivq~lp~LWe~s~~e~lLr~al 635 (978)
T KOG1993|consen 565 FLPYLENLFVLLFKLLKAVEEC-------DTKTSVLNLLSTLIERVSEHIAPY--ASTIVQYLPLLWEESEEEPLLRCAL 635 (978)
T ss_pred hhhhHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHhhhccCcHHHHHH
Confidence 1 123344455555544332 555666666666654222 11111 0111222222221 2346678888
Q ss_pred HHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC-CH---HHHHHH----HHHHHHhhcCCcchHHHHHHcCChHHHHHh
Q 004992 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DS---AIHYEA----VGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (720)
Q Consensus 228 ~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~---~v~~~a----~~~L~nL~~~~~~~~~~~~~~~~l~~L~~l 299 (720)
+.+|.++... -..+....- .++-..+.+-.+. +| -..+.+ ..+|.|. +.....+. +++|.++..
T Consensus 636 L~~L~~lV~a-lg~qS~~~~-~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~----~~l~p~ll--~L~p~l~~~ 707 (978)
T KOG1993|consen 636 LATLRNLVNA-LGAQSFEFY-PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS----QKLTPELL--LLFPHLLYI 707 (978)
T ss_pred HHHHHHHHHH-hccCCccch-HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc----cccCHHHH--HHHHHHHHH
Confidence 8888888851 111111111 1222223333332 21 122222 2234444 33323332 366777777
Q ss_pred hccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCH
Q 004992 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGL 379 (720)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i 379 (720)
+......+ ..+..++..-.--+...-..-...|+...+..++.+-..+-..+.+..+..+.. ....-......+++
T Consensus 708 iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~---t~~il~~~~~~~~L 783 (978)
T KOG1993|consen 708 IEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIK---TNPILGSLLFSPLL 783 (978)
T ss_pred HHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh---hhHHHHhhhcchhh
Confidence 76543322 333444433222111111112234677778887776555556666666666666 33333334556677
Q ss_pred HHHHHHh--cCCChhHHHHHHHHHHhcc
Q 004992 380 VPLLKLL--DSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 380 ~~l~~ll--~~~~~~v~~~a~~~L~~l~ 405 (720)
+.+..-+ +.+.|-+...-+.++..++
T Consensus 784 ~~lf~~I~~~~~yP~~~~~yl~vvaRi~ 811 (978)
T KOG1993|consen 784 SRLFLSIAENDKYPYVMGEYLLVVARIS 811 (978)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 7766644 4455666555666666664
No 414
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=24.41 E-value=8.1e+02 Score=26.17 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=24.1
Q ss_pred hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 004992 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (720)
Q Consensus 247 ~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~ 281 (720)
+..++|.+..+|..+-.+..-.+...++.|....+
T Consensus 115 E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 115 EEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34489999999988766666666777777764444
No 415
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.07 E-value=1.5e+03 Score=28.44 Aligned_cols=224 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcC
Q 004992 128 FEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (720)
Q Consensus 128 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (720)
.||...................+...++.|.+..+..-+.+.+. .++..+.+++..+-.+.+...+.....-
T Consensus 1410 YDP~FlL~Lf~~~f~p~~~v~~r~~fvs~~lLa~~F~~lSS~D~--------~mr~la~~~lqi~~dHLe~l~ek~~a~~ 1481 (1758)
T KOG1791|consen 1410 YDPRFLLLLFSHNFLPESVVEIRLIFVSRGLLALLFKGLSSDDP--------SMRKLAYWVLQIFLDHLENLLEKKQAQF 1481 (1758)
T ss_pred cchHHHHHHHHHhcchhcchhcchhhhhcccHHHHhhhhccCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CcHHHHHhhcCCC-------HHHHHHHHHHHHHhccCChhc----------HHHHHhCCCHHHHHHhhcC---CCHHHHH
Q 004992 208 GIPPLVELLEFTD-------TKVQRAAAGALRTLAFKNDEN----------KNQIVECNALPTLILMLRS---EDSAIHY 267 (720)
Q Consensus 208 ~i~~L~~ll~~~~-------~~v~~~a~~~L~~L~~~~~~~----------~~~i~~~g~l~~L~~ll~~---~~~~v~~ 267 (720)
.+-.+..+.+.+. +.+-..-..-...++..+... ...+.+-..+|.+-.++.+ +....|.
T Consensus 1482 ~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~ 1561 (1758)
T KOG1791|consen 1482 NLLYLSCLAQNGSRESDPRLISICALFIAFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTERE 1561 (1758)
T ss_pred HHHHHHHHHHccCcCCCcchhhHHHHHHHHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhh
Q ss_pred HHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC--ChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-
Q 004992 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS- 344 (720)
Q Consensus 268 ~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~- 344 (720)
+.+..+...-...++. +.....+....++....+. +...+.....+|.+-..........+-..|+..++...+.+
T Consensus 1562 Wvl~LV~~glks~~D~-ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~ 1640 (1758)
T KOG1791|consen 1562 WVLELVSKGLKSCPDY-QLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSS 1640 (1758)
T ss_pred hhHHHHHHHhcCchhh-hHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhcccc
Q ss_pred -CCHHHHHH-HHHHHHHH
Q 004992 345 -PDVQLREM-SAFALGRL 360 (720)
Q Consensus 345 -~~~~v~~~-a~~~L~~l 360 (720)
-.+..+.. -...+.++
T Consensus 1641 ~~k~~~~~~l~~~v~~~l 1658 (1758)
T KOG1791|consen 1641 FLKPVLLKALVISVLKVL 1658 (1758)
T ss_pred ccchHHHhhhHHHHHHHH
No 416
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=23.60 E-value=1.8e+02 Score=25.54 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=20.6
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 378 GLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 378 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
-+..|+++|.+.+..+...|+.+|.+..-
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 38889999988889999999999988754
No 417
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=23.50 E-value=6e+02 Score=23.59 Aligned_cols=132 Identities=17% Similarity=0.089 Sum_probs=71.6
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcccCCCch-hHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHH
Q 004992 380 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY 458 (720)
Q Consensus 380 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 458 (720)
..+..+..+...+.+..++.++.......+.. -..++ ..++...+. ...... +...+..+... .....+.+..
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~~~~~~~-~~~~~~~~W-~~~D~~---~~~~~~~~~~~-~~~~~~~~~~ 127 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTEEDLELLE-KWLPDIDNW-ATCDSL---CSKLLGPLLKK-HPEALELLEK 127 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--HHHHHHHH-HCCCCCCCH-HHHHHH---THHHHHHHHHH-HGGHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhHHHHHHHH-HHhccCCcc-hhhhHH---HHHHHHHHHHh-hHHHHHHHHH
Confidence 44555667788888888888886544211110 11111 122221111 111111 01111111111 1567888888
Q ss_pred HHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 459 LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 459 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.++++++-+|..+..++.......+.. .....+..++.+++.-+|....++|..++...
T Consensus 128 W~~s~~~w~rR~~~v~~~~~~~~~~~~------~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 128 WAKSDNEWVRRAAIVMLLRYIRKEDFD------ELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp HHHCSSHHHHHHHHHCTTTHGGGCHHH------HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HHhCCcHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 999999999999988776664441111 12344445566677779999999999988753
No 418
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.17 E-value=2.4e+02 Score=21.99 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=42.7
Q ss_pred cCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh----cCCCHHHHHHHHHHH
Q 004992 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL----EFTDTKVQRAAAGAL 231 (720)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~L 231 (720)
..++.++..++....+. ++++..+.|+.++...... . ... |.+.++..+ .+++..+...|..++
T Consensus 16 ~~fL~Pf~~i~~~~~~~-------~vre~il~ci~qil~~~~~---~-i~S-GW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSI-------DVRELILECILQILQSRGE---N-IKS-GWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHHhHH---H-HHh-ccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 44678888887665443 9999999999999874331 2 233 466666655 345666776666655
Q ss_pred H
Q 004992 232 R 232 (720)
Q Consensus 232 ~ 232 (720)
.
T Consensus 84 ~ 84 (86)
T PF09324_consen 84 Q 84 (86)
T ss_pred h
Confidence 3
No 419
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=22.92 E-value=1.8e+03 Score=28.83 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=49.4
Q ss_pred CcchHHHHHHHHHHHHHhc-cChhhHHHHHHc---CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCch
Q 004992 126 KPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN---GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS 198 (720)
Q Consensus 126 ~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 198 (720)
.|.+......-+..+..++ .++..|..+.+. ..++.|..++..+-+. .++.....+|..++...++
T Consensus 574 ~~ee~~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~-------~Lkaai~~~Laal~~~~~~ 643 (1691)
T PF11894_consen 574 SPEEVEMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPP-------SLKAAIFNALAALAAKSPE 643 (1691)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHhcCHH
Confidence 4455567777888999999 667788887764 3699999999886554 7888888999999532333
No 420
>PF15573 Imm27: Immunity protein 27
Probab=22.88 E-value=4.8e+02 Score=24.54 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 75 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
.|..+.-.+++.++++|.+++. .+.+-+..| .+.+.. .+---+..+...++
T Consensus 59 kDE~vLNLCiRlFcSV~THdDL----~~~nNl~FL----s~asE~-----------~v~TF~s~A~~tlS---------- 109 (259)
T PF15573_consen 59 KDEAVLNLCIRLFCSVATHDDL----RDSNNLRFL----SSASEF-----------GVFTFASGAITTLS---------- 109 (259)
T ss_pred hhHHHHHHHHHHHHhhcchHhh----hcccceehH----hhhhHH-----------HHHHHHHHhhccch----------
Confidence 5777888888888888887653 333333322 222220 22223333343333
Q ss_pred HcCChHHHHHHHhccCCC
Q 004992 155 DNGALSHLVNLLKRHMDS 172 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~ 172 (720)
..++|.|+.++...++.
T Consensus 110 -yeVIPYLLaLleeWed~ 126 (259)
T PF15573_consen 110 -YEVIPYLLALLEEWEDI 126 (259)
T ss_pred -hhHHHHHHHHHHHHhcc
Confidence 45799999999987763
No 421
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=22.88 E-value=3.1e+02 Score=22.60 Aligned_cols=70 Identities=16% Similarity=0.062 Sum_probs=49.5
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh------cCCChhHHHHHHHHHHhc
Q 004992 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL------DSKNGSLQHNAAFALYGL 404 (720)
Q Consensus 334 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll------~~~~~~v~~~a~~~L~~l 404 (720)
++..|.+-|.+.++.++..|+..|-.++..+ +......+....++..+++.. ...+..||..+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~-g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNC-GERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc-cHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4677777788889999999999999999843 344455566666666665531 223678888888877654
No 422
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.79 E-value=1.2e+03 Score=26.86 Aligned_cols=223 Identities=12% Similarity=0.093 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCc
Q 004992 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (720)
Q Consensus 130 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (720)
+-+|.+.+.+|.++...-..+.. .-..++-+++.+-.+.+++... -+.+.+...-.......+.....+. +.+
T Consensus 629 ~lLr~alL~~L~~lV~alg~qS~-~~~~fL~pVIel~~D~~sP~hv----~L~EDgmeLW~~~L~n~~~l~p~ll--~L~ 701 (978)
T KOG1993|consen 629 PLLRCALLATLRNLVNALGAQSF-EFYPFLYPVIELSTDPSSPEHV----YLLEDGMELWLTTLMNSQKLTPELL--LLF 701 (978)
T ss_pred cHHHHHHHHHHHHHHHHhccCCc-cchHHHHHHHHHhcCCCCCcee----ehhhhHHHHHHHHHhcccccCHHHH--HHH
Confidence 37888889999888711110000 0112334455555555444322 2223333322222222233323332 466
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhc-cCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHH
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLA-FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~-~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~ 288 (720)
|.+...+....+.++. ++.++..-. -++...-.. ...|+...+..++.+-..+-....+.++..+...++ .-....
T Consensus 702 p~l~~~iE~ste~L~t-~l~Ii~sYilLd~~~fl~~-y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~-il~~~~ 778 (978)
T KOG1993|consen 702 PHLLYIIEQSTENLPT-VLMIISSYILLDNTVFLND-YAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP-ILGSLL 778 (978)
T ss_pred HHHHHHHHhhhhhHHH-HHHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-HHHhhh
Confidence 7777777665544443 344443222 223332222 224678888888888777777778888888876665 334455
Q ss_pred HcCChHHHHHhhc--cCChHHHHHHHHHHHHHhccCcchhhHHHhc-CChHHH--------HHHhcC-CCHHHHHHHHHH
Q 004992 289 AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPL--------IEMLQS-PDVQLREMSAFA 356 (720)
Q Consensus 289 ~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L--------~~ll~~-~~~~v~~~a~~~ 356 (720)
..++++.+..-+- ...|-+-..-+.+++.+.-.+++....+.+. .-...+ +.+..+ .+++-|+--+-+
T Consensus 779 ~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~La 858 (978)
T KOG1993|consen 779 FSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLA 858 (978)
T ss_pred cchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHH
Confidence 6777776665543 3346666666666776665555554444332 111122 222233 456666666666
Q ss_pred HHHHhh
Q 004992 357 LGRLAQ 362 (720)
Q Consensus 357 L~~l~~ 362 (720)
+..+..
T Consensus 859 lsSll~ 864 (978)
T KOG1993|consen 859 LSSLLR 864 (978)
T ss_pred HHHHhc
Confidence 666655
No 423
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=22.69 E-value=85 Score=20.57 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHhcchhHHHHHHHHH
Q 004992 450 GRVLNHLLYLMRVAEKGVQRRVALAL 475 (720)
Q Consensus 450 ~~~~~~L~~ll~~~~~~v~~~a~~~L 475 (720)
+.+...+..-+.++++.||.+|..+|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34666777788999999999998753
No 424
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.55 E-value=1.1e+02 Score=25.58 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=32.9
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHh
Q 004992 378 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 416 (720)
Q Consensus 378 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 416 (720)
+++.|++-+.++++.|...|..+|...+..+.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 688899999999999999999999999987766555544
No 425
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=22.12 E-value=4.1e+02 Score=23.07 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhc--cChhhHHHHHHcCChHH-HHHHHhccCCCccchhhhHHHHHHHHHHHHhhh
Q 004992 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSH-LVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (720)
Q Consensus 131 ~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~-L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~ 194 (720)
.++..|+..|-.+. .+..++..+...+++.. |++++...... ..+|+..++..+...+.
T Consensus 54 ~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~-----~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 54 KEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNP-----PTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCC-----cHHHHHHHHHHHHHHHH
Confidence 78888888888888 55788888898999997 99999643221 11788888888887774
No 426
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=22.07 E-value=4.4e+02 Score=22.88 Aligned_cols=70 Identities=10% Similarity=0.110 Sum_probs=51.8
Q ss_pred CcHHHHHhhc-CCCHHHHHHHHHHHHHhccCC-hhcHHHHHhCCCHHH-HHHhhcC---CCHHHHHHHHHHHHHhh
Q 004992 208 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPT-LILMLRS---EDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 208 ~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~l~~-L~~ll~~---~~~~v~~~a~~~L~nL~ 277 (720)
++..|..-+. +.++.+...|+..|-.+..+. ......+...+++.. |++++.. .+..|+..++..+...+
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 4456665555 468889888998888888633 455667777788987 8999864 34588999999988886
No 427
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=21.53 E-value=1e+03 Score=25.51 Aligned_cols=54 Identities=24% Similarity=0.236 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHhccCc-chhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 305 SESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
...|..++.+|+.+++.-+ .....+. -+.|+.+|.+....-|..|+-++...+.
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~----~~~L~~~L~S~sa~qR~~aalvl~ewa~ 155 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIF----QPLLLPYLNSPSATQRLLAALVLEEWAK 155 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHH----HHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 4567888899998876422 2212221 1368888998888888888888888887
No 428
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=21.39 E-value=6.8e+02 Score=28.53 Aligned_cols=56 Identities=16% Similarity=0.059 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhc
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLA 235 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~ 235 (720)
..|..++..|+.+....+..-..+.+...++.|+..|. +.+..+...|+.+|.-|.
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 67788999999999877877778888899999988875 556778888888887776
No 429
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.88 E-value=6.2e+02 Score=26.32 Aligned_cols=111 Identities=15% Similarity=0.095 Sum_probs=74.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHH
Q 004992 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (720)
Q Consensus 251 l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 330 (720)
+.-|+..+++.+..+|..|+.-|..+..+.+.... .-...+++.+..+..+.+..+|......+-++....-.......
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 66778888899999999999988888655454322 22345677788888888888888888777775431111111111
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 331 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
-.=+++.+...|....+++|.-++..|.-++.
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~ 170 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLE 170 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHH
Confidence 11134555555667789999999999888887
No 430
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.66 E-value=2e+02 Score=23.93 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=27.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 004992 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (720)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~ 280 (720)
+++.|+.-|.|++++|...|+.+|...+...
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 5788999999999999999999999998665
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=20.36 E-value=1.6e+02 Score=31.91 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCcccChhhHHHHHHHHhhhChHHHHHHHHHHHHhcC
Q 004992 604 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 650 (720)
Q Consensus 604 ~~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i 650 (720)
.+...+|+- -.++++|..+++.+|+.|++++|.+.+..++.+++
T Consensus 109 ~~~C~~fL~---~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF 152 (480)
T PHA02790 109 IYTCINFIL---RDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHF 152 (480)
T ss_pred HHHHHHHHH---hhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhH
Confidence 344445553 24788999999999999999999999998888764
Done!