Query 004992
Match_columns 720
No_of_seqs 536 out of 4147
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 12:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 7.2E-37 2.5E-41 334.5 32.3 402 58-519 77-495 (529)
2 3ul1_B Importin subunit alpha- 100.0 1.2E-36 4.3E-41 330.5 32.0 402 59-520 59-477 (510)
3 4b8j_A Importin subunit alpha- 100.0 8.2E-36 2.8E-40 327.8 34.0 406 56-523 73-498 (528)
4 1wa5_B Importin alpha subunit; 100.0 2.8E-35 9.7E-40 323.3 35.7 406 57-523 87-512 (530)
5 1jdh_A Beta-catenin; beta-cate 100.0 2.3E-35 8E-40 325.0 32.9 459 31-520 29-529 (529)
6 3now_A UNC-45 protein, SD10334 100.0 5.3E-36 1.8E-40 330.6 26.4 405 57-522 290-738 (810)
7 2z6h_A Catenin beta-1, beta-ca 100.0 6.5E-35 2.2E-39 327.5 34.3 438 57-523 56-529 (644)
8 3ul1_B Importin subunit alpha- 100.0 1.9E-34 6.6E-39 313.3 34.8 376 56-481 99-479 (510)
9 3tpo_A Importin subunit alpha- 100.0 1.3E-34 4.5E-39 316.6 32.7 375 56-480 118-497 (529)
10 2z6g_A B-catenin; FULL-length, 100.0 3.6E-34 1.2E-38 325.8 32.5 436 57-523 192-665 (780)
11 3now_A UNC-45 protein, SD10334 100.0 2.2E-34 7.7E-39 317.6 29.7 409 50-522 239-695 (810)
12 1jdh_A Beta-catenin; beta-cate 100.0 2.7E-33 9.4E-38 308.5 35.8 436 55-522 15-490 (529)
13 3nmz_A APC variant protein; pr 100.0 6.4E-34 2.2E-38 297.8 26.9 367 82-482 48-452 (458)
14 3l6x_A Catenin delta-1; cateni 100.0 1.5E-33 5.3E-38 301.0 30.1 373 58-494 49-490 (584)
15 3l6x_A Catenin delta-1; cateni 100.0 2.5E-33 8.7E-38 299.3 30.9 368 101-526 45-481 (584)
16 2jdq_A Importin alpha-1 subuni 100.0 2E-33 6.7E-38 303.0 30.4 401 59-522 22-444 (450)
17 2z6h_A Catenin beta-1, beta-ca 100.0 3.1E-32 1E-36 305.8 37.7 436 57-523 14-488 (644)
18 3nmz_A APC variant protein; pr 100.0 1.8E-33 6.2E-38 294.4 24.7 368 105-523 33-452 (458)
19 1xm9_A Plakophilin 1; armadill 100.0 7.3E-33 2.5E-37 296.0 28.3 361 105-524 3-452 (457)
20 2z6g_A B-catenin; FULL-length, 100.0 8.4E-32 2.9E-36 306.4 37.7 436 56-523 149-624 (780)
21 4b8j_A Importin subunit alpha- 100.0 7.7E-32 2.6E-36 296.2 33.7 365 104-523 74-445 (528)
22 1xm9_A Plakophilin 1; armadill 100.0 4E-32 1.4E-36 290.3 29.3 362 59-486 4-455 (457)
23 1wa5_B Importin alpha subunit; 100.0 1.9E-31 6.4E-36 292.9 34.4 367 103-523 86-459 (530)
24 2jdq_A Importin alpha-1 subuni 100.0 8E-31 2.7E-35 282.6 32.9 379 57-482 64-445 (450)
25 3nmw_A APC variant protein; AR 100.0 1.6E-29 5.6E-34 257.0 24.2 283 125-410 42-338 (354)
26 3nmw_A APC variant protein; AR 100.0 3.3E-29 1.1E-33 254.8 21.6 276 78-362 47-334 (354)
27 3hve_A Gigaxonin; ubiquitin, c 100.0 7.1E-28 2.4E-32 236.1 17.1 161 544-704 23-185 (256)
28 3htm_A Speckle-type POZ protei 99.9 1.6E-27 5.4E-32 218.9 14.9 147 544-690 26-172 (172)
29 3i3n_A Kelch-like protein 11; 99.9 1.9E-27 6.4E-32 236.1 14.3 159 544-702 24-191 (279)
30 4hxt_A De novo protein OR329; 99.9 4.2E-25 1.4E-29 217.6 24.6 239 104-362 2-241 (252)
31 4hxt_A De novo protein OR329; 99.9 8.3E-25 2.8E-29 215.5 23.8 243 157-409 2-244 (252)
32 4db8_A Armadillo-repeat protei 99.9 2.1E-24 7.2E-29 212.5 23.7 240 157-406 12-251 (252)
33 4db8_A Armadillo-repeat protei 99.9 2.8E-24 9.5E-29 211.7 22.4 239 104-362 12-251 (252)
34 3opb_A SWI5-dependent HO expre 99.9 5.8E-24 2E-28 229.6 25.3 389 76-522 269-729 (778)
35 3hqi_A Speckle-type POZ protei 99.9 6.4E-25 2.2E-29 222.1 15.4 147 544-690 166-312 (312)
36 4eoz_A Speckle-type POZ protei 99.9 7.3E-25 2.5E-29 194.8 6.5 129 544-672 17-145 (145)
37 3opb_A SWI5-dependent HO expre 99.9 4.8E-21 1.6E-25 207.0 32.1 381 80-521 229-683 (778)
38 4db6_A Armadillo repeat protei 99.9 1.1E-21 3.8E-26 187.1 21.8 200 205-406 10-209 (210)
39 4db6_A Armadillo repeat protei 99.9 1.7E-21 5.7E-26 185.9 21.5 200 155-362 10-209 (210)
40 2vkp_A BTB/POZ domain-containi 99.9 2.2E-22 7.4E-27 168.7 11.1 104 546-650 2-109 (109)
41 1xqr_A HSPBP1 protein; armadil 99.9 1.7E-20 5.7E-25 185.4 23.7 210 55-283 26-243 (296)
42 2if5_A Zinc finger and BTB dom 99.9 7.1E-22 2.4E-26 168.5 11.4 103 544-646 17-119 (120)
43 1r29_A B-cell lymphoma 6 prote 99.9 1.8E-21 6.1E-26 167.8 11.9 105 544-649 21-126 (127)
44 1xqr_A HSPBP1 protein; armadil 99.9 2.4E-20 8.1E-25 184.3 20.6 226 180-408 55-289 (296)
45 2z8h_A Transcription regulator 99.8 1.2E-21 4.1E-26 171.2 8.9 109 544-654 28-137 (138)
46 2ppi_A Gigaxonin; BTB domain, 99.8 2.4E-21 8.3E-26 170.0 8.9 103 544-646 39-143 (144)
47 3b84_A Zinc finger and BTB dom 99.8 2.3E-21 7.7E-26 164.6 8.3 101 544-648 16-116 (119)
48 1b3u_A Protein (protein phosph 99.8 2.5E-20 8.6E-25 207.8 18.8 411 29-520 174-586 (588)
49 2yy9_A Zinc finger and BTB dom 99.8 3.4E-21 1.1E-25 167.4 8.2 106 544-653 17-122 (135)
50 1buo_A POZ domain, protein (pr 99.8 1.1E-20 3.6E-25 161.1 11.0 102 544-650 20-121 (121)
51 2vpk_A Myoneurin; transcriptio 99.8 1.3E-20 4.4E-25 159.6 10.6 100 544-647 14-115 (116)
52 3tt9_A Plakophilin-2; cell adh 99.8 1.8E-19 6.2E-24 169.7 16.1 197 158-362 9-229 (233)
53 2q81_A MIZ-1 protein; BTB/POZ 99.8 2.2E-20 7.6E-25 158.5 8.6 99 544-647 19-117 (119)
54 3tt9_A Plakophilin-2; cell adh 99.8 3.7E-19 1.3E-23 167.6 16.4 196 105-320 9-229 (233)
55 3ohu_A Transcription regulator 99.8 6.7E-21 2.3E-25 163.7 3.3 100 544-645 24-124 (125)
56 2ihc_A Transcription regulator 99.8 8.7E-21 3E-25 162.3 3.7 102 544-647 21-123 (124)
57 3ga1_A Nucleus accumbens-assoc 99.8 2E-20 7E-25 161.4 5.9 102 544-649 25-127 (129)
58 1b3u_A Protein (protein phosph 99.8 2.9E-18 9.8E-23 191.1 22.1 400 78-522 141-549 (588)
59 3m5b_A Zinc finger and BTB dom 99.8 2.9E-19 9.9E-24 150.6 9.0 93 547-648 25-117 (119)
60 3fkc_A Transcriptional regulat 99.8 1.5E-18 5E-23 146.1 9.6 92 544-640 23-115 (116)
61 4fdd_A Transportin-1; heat rep 99.7 1.1E-17 3.9E-22 194.2 16.6 471 13-523 87-660 (852)
62 3grl_A General vesicular trans 99.7 1.7E-15 5.9E-20 159.4 29.1 343 51-421 15-409 (651)
63 4fdd_A Transportin-1; heat rep 99.7 3.4E-16 1.2E-20 181.8 19.0 382 76-523 103-514 (852)
64 3grl_A General vesicular trans 99.7 8E-15 2.7E-19 154.4 27.0 375 105-523 22-451 (651)
65 1ibr_B P95, importin beta-1 su 99.6 6.2E-14 2.1E-18 150.9 21.7 382 76-523 14-439 (462)
66 1qgr_A Protein (importin beta 99.6 6.2E-14 2.1E-18 163.9 20.6 436 59-523 170-681 (876)
67 1oyz_A Hypothetical protein YI 99.6 4.2E-13 1.5E-17 133.6 23.1 230 204-521 20-250 (280)
68 1oyz_A Hypothetical protein YI 99.6 6.9E-13 2.4E-17 132.1 24.1 253 59-403 25-279 (280)
69 2bpt_A Importin beta-1 subunit 99.5 5.4E-13 1.9E-17 155.6 26.9 418 76-523 194-670 (861)
70 2bpt_A Importin beta-1 subunit 99.5 5.3E-14 1.8E-18 164.1 18.1 430 59-521 367-857 (861)
71 2vgl_B AP-2 complex subunit be 99.5 2.4E-13 8.3E-18 150.0 22.1 355 76-522 62-420 (591)
72 2vgl_B AP-2 complex subunit be 99.5 3.3E-13 1.1E-17 148.9 21.7 398 62-522 87-494 (591)
73 1qgr_A Protein (importin beta 99.5 3E-12 1E-16 149.5 28.3 402 56-523 34-481 (876)
74 1ibr_B P95, importin beta-1 su 99.4 1.3E-12 4.4E-17 140.6 17.9 357 58-482 36-439 (462)
75 1w63_A Adapter-related protein 99.4 9.3E-11 3.2E-15 129.8 32.8 348 76-522 83-452 (618)
76 1w63_A Adapter-related protein 99.4 1.4E-11 5E-16 136.3 25.4 397 62-522 108-578 (618)
77 2ast_A S-phase kinase-associat 99.4 7.5E-13 2.6E-17 117.3 11.4 102 555-657 3-133 (159)
78 3ltm_A Alpha-REP4; protein eng 99.4 3.6E-12 1.2E-16 120.9 16.4 189 248-524 18-206 (211)
79 3ltm_A Alpha-REP4; protein eng 99.4 8.1E-12 2.8E-16 118.4 18.7 189 206-483 18-206 (211)
80 4gmo_A Putative uncharacterize 99.4 1.3E-10 4.5E-15 129.9 30.1 201 57-276 34-256 (684)
81 3ltj_A Alpharep-4; protein eng 99.4 2.9E-11 9.9E-16 113.6 19.7 184 207-479 14-197 (201)
82 1u6g_C TIP120 protein, CAND1; 99.4 1.7E-12 5.8E-17 156.9 13.9 458 29-523 58-600 (1230)
83 3ltj_A Alpharep-4; protein eng 99.4 1.8E-11 6E-16 115.1 17.0 185 249-521 14-198 (201)
84 1u6g_C TIP120 protein, CAND1; 99.3 1.1E-10 3.7E-15 141.1 24.6 423 59-521 8-506 (1230)
85 4ajy_C Transcription elongatio 99.2 1E-10 3.4E-15 93.8 8.6 80 555-635 4-97 (97)
86 2vgl_A Adaptor protein complex 99.1 2.1E-08 7.2E-13 110.4 26.8 352 76-522 87-471 (621)
87 2vgl_A Adaptor protein complex 99.1 1.5E-07 5E-12 103.7 31.5 328 104-522 74-434 (621)
88 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 5.4E-10 1.8E-14 96.3 9.0 99 555-658 4-129 (141)
89 2p1m_A SKP1-like protein 1A; F 98.9 6.1E-10 2.1E-14 98.4 4.4 107 555-665 6-143 (160)
90 4gmo_A Putative uncharacterize 98.9 5.8E-09 2E-13 116.6 13.1 219 105-343 35-286 (684)
91 2qk2_A LP04448P; mini spindles 98.8 4.1E-08 1.4E-12 94.8 12.6 188 293-523 17-207 (242)
92 2db0_A 253AA long hypothetical 98.7 5.1E-06 1.8E-10 71.5 22.2 215 103-362 31-246 (253)
93 3tjz_B Coatomer subunit gamma; 98.7 7.4E-07 2.5E-11 89.1 18.1 302 133-517 45-349 (355)
94 3b2a_A TON_1937, putative unch 98.7 8.3E-07 2.9E-11 80.1 16.3 187 291-522 33-219 (265)
95 3b2a_A TON_1937, putative unch 98.7 1.1E-06 3.9E-11 79.2 16.7 187 207-408 33-220 (265)
96 4ady_A RPN2, 26S proteasome re 98.6 1E-05 3.5E-10 90.1 27.9 303 130-519 409-717 (963)
97 2qk2_A LP04448P; mini spindles 98.6 2.9E-07 9.9E-12 88.8 12.4 186 161-364 19-207 (242)
98 1ho8_A Vacuolar ATP synthase s 98.6 7.9E-06 2.7E-10 83.4 22.7 346 157-523 77-478 (480)
99 2db0_A 253AA long hypothetical 98.6 1.7E-05 5.7E-10 68.4 20.9 216 247-522 30-247 (253)
100 2qk1_A Protein STU2; STU2P, XM 98.6 3.3E-07 1.1E-11 88.2 11.4 195 295-523 20-222 (249)
101 1hv2_A Elongin C, ELC1; protei 98.5 2.9E-07 9.8E-12 73.4 8.3 80 554-635 5-99 (99)
102 4ady_A RPN2, 26S proteasome re 98.5 1.9E-05 6.5E-10 88.0 23.9 256 180-522 410-677 (963)
103 2fnj_C Transcription elongatio 98.4 2.8E-07 9.6E-12 73.1 6.4 80 555-635 3-96 (96)
104 3tjz_B Coatomer subunit gamma; 98.4 7.5E-06 2.6E-10 81.8 17.2 247 208-523 69-318 (355)
105 3v7d_A Suppressor of kinetocho 98.4 1.7E-06 5.8E-11 76.7 10.9 97 554-651 8-134 (169)
106 2eqx_A Kelch repeat and BTB do 98.4 2.7E-07 9.2E-12 75.1 4.9 57 647-703 5-61 (105)
107 2qk1_A Protein STU2; STU2P, XM 98.4 2.8E-06 9.7E-11 81.6 12.7 186 179-365 30-223 (249)
108 1te4_A Conserved protein MTH18 98.3 7.3E-08 2.5E-12 82.9 0.7 121 331-518 10-130 (131)
109 1wa5_C Importin alpha RE-expor 98.3 1.3E-05 4.3E-10 94.0 19.9 485 13-523 82-672 (960)
110 1te4_A Conserved protein MTH18 98.3 6.6E-08 2.2E-12 83.2 -0.3 120 206-359 11-130 (131)
111 3drz_A BTB/POZ domain-containi 98.3 5.4E-06 1.8E-10 67.3 10.1 95 553-648 6-106 (107)
112 1wa5_C Importin alpha RE-expor 98.2 4E-05 1.4E-09 89.7 21.1 380 75-522 49-526 (960)
113 1ho8_A Vacuolar ATP synthase s 98.1 0.00023 7.7E-09 72.8 21.0 316 59-405 79-475 (480)
114 2iw3_A Elongation factor 3A; a 98.1 0.00063 2.1E-08 77.0 24.8 288 183-523 32-326 (986)
115 1vcb_B Protein (elongin C); tu 98.0 1.1E-05 3.8E-10 65.6 6.9 81 554-635 18-112 (112)
116 2iw3_A Elongation factor 3A; a 98.0 0.00048 1.7E-08 77.9 22.0 285 80-405 31-323 (986)
117 2x1g_F Cadmus; transport prote 98.0 4.1E-05 1.4E-09 89.9 13.4 447 13-522 79-616 (971)
118 3dad_A FH1/FH2 domain-containi 97.9 0.00058 2E-08 66.2 16.9 183 161-352 122-326 (339)
119 2x19_B Importin-13; nuclear tr 97.8 0.00019 6.5E-09 84.3 16.1 438 12-522 96-600 (963)
120 3dad_A FH1/FH2 domain-containi 97.8 0.00099 3.4E-08 64.6 17.1 186 56-267 117-325 (339)
121 3m1i_C Exportin-1; heat repeat 97.7 0.0016 5.4E-08 76.9 20.9 336 131-522 210-619 (1049)
122 3ibv_A Exportin-T; karyopherin 97.6 0.00019 6.3E-09 83.2 12.0 305 131-483 208-569 (980)
123 3ibv_A Exportin-T; karyopherin 97.6 0.0034 1.2E-07 72.6 22.0 315 59-406 191-566 (980)
124 2x1g_F Cadmus; transport prote 97.5 0.012 4.1E-07 68.9 24.9 215 131-362 479-722 (971)
125 4hat_C Exportin-1; heat repeat 97.4 0.011 3.6E-07 68.7 22.4 338 131-523 210-620 (1023)
126 2x19_B Importin-13; nuclear tr 97.4 0.059 2E-06 63.0 28.4 331 131-522 464-847 (963)
127 1lrv_A LRV, leucine-rich repea 97.3 0.00019 6.5E-09 67.9 5.5 91 212-357 151-241 (244)
128 4ffb_C Protein STU2; tubulin f 97.3 0.0063 2.2E-07 59.4 16.1 193 208-407 11-213 (278)
129 3drx_A BTB/POZ domain-containi 97.3 0.0005 1.7E-08 61.5 7.0 97 551-648 10-112 (202)
130 3m1i_C Exportin-1; heat repeat 97.2 0.085 2.9E-06 62.1 27.7 376 78-523 115-571 (1049)
131 1lrv_A LRV, leucine-rich repea 97.2 0.00035 1.2E-08 66.0 5.2 178 94-401 64-241 (244)
132 3oc3_A Helicase MOT1, MOT1; re 97.1 0.002 6.9E-08 66.1 10.2 250 105-402 175-432 (800)
133 4ffb_C Protein STU2; tubulin f 97.1 0.005 1.7E-07 60.1 12.8 192 293-523 12-214 (278)
134 2of3_A ZYG-9; multifunctional 97.0 0.024 8.1E-07 53.8 16.2 177 210-406 49-236 (266)
135 1upk_A MO25 protein; transfera 97.0 0.037 1.3E-06 53.6 17.0 206 244-483 73-286 (341)
136 3oc3_A Helicase MOT1, MOT1; re 96.9 0.004 1.4E-07 63.9 10.4 243 208-517 175-432 (800)
137 2fv2_A RCD1 required for cell 96.9 0.033 1.1E-06 51.4 15.2 177 80-276 73-266 (268)
138 1upk_A MO25 protein; transfera 96.8 0.027 9.2E-07 54.6 14.7 204 285-523 72-285 (341)
139 2of3_A ZYG-9; multifunctional 96.8 0.007 2.4E-07 57.4 10.7 182 294-523 49-238 (266)
140 2fv2_A RCD1 required for cell 96.6 0.078 2.7E-06 49.0 15.6 223 131-360 16-266 (268)
141 4hat_C Exportin-1; heat repeat 96.3 0.073 2.5E-06 61.7 17.4 141 178-323 466-621 (1023)
142 1s1g_A Potassium voltage-gated 96.2 0.02 6.8E-07 47.3 8.4 91 553-647 13-110 (124)
143 3l9t_A Putative uncharacterize 95.8 0.05 1.7E-06 49.9 10.0 144 250-416 72-218 (240)
144 3gjx_A Exportin-1; transport, 95.8 0.42 1.4E-05 55.4 19.9 102 345-482 491-597 (1073)
145 3kvt_A Potassium channel prote 95.7 0.0084 2.9E-07 48.8 4.1 96 554-650 6-106 (115)
146 3a6p_A Exportin-5; exportin-5, 95.7 0.62 2.1E-05 55.4 21.6 257 75-362 59-380 (1204)
147 1nn7_A Potassium channel KV4.2 95.5 0.017 5.7E-07 46.3 5.1 80 555-638 2-86 (105)
148 2nz0_B Potassium voltage-gated 95.4 0.041 1.4E-06 46.4 7.5 84 551-638 33-121 (140)
149 3l9t_A Putative uncharacterize 95.4 0.19 6.7E-06 46.0 12.1 143 60-247 73-218 (240)
150 3gjx_A Exportin-1; transport, 95.2 6.4 0.00022 45.6 30.5 298 180-523 222-597 (1073)
151 3u0r_A Apoptosis inhibitor 5; 94.8 4 0.00014 41.6 24.3 162 76-277 41-205 (507)
152 3ebb_A Phospholipase A2-activa 94.4 0.73 2.5E-05 44.8 14.3 178 131-315 117-300 (304)
153 1t1d_A Protein (potassium chan 94.2 0.074 2.5E-06 41.9 5.5 84 555-639 3-90 (100)
154 3ebb_A Phospholipase A2-activa 94.2 0.74 2.5E-05 44.8 13.8 133 219-354 160-298 (304)
155 3u0r_A Apoptosis inhibitor 5; 91.2 8 0.00027 39.5 16.6 160 180-359 43-203 (507)
156 2f31_A Diaphanous protein homo 90.9 1.2 4.1E-05 41.5 9.9 140 346-511 67-218 (233)
157 1lsh_A Lipovitellin (LV-1N, LV 90.8 7.8 0.00027 45.2 18.7 123 211-362 444-576 (1056)
158 3c2g_A SYS-1 protein; beta-cat 90.3 4.8 0.00016 38.9 13.2 131 136-276 263-401 (619)
159 2f31_A Diaphanous protein homo 90.3 5.7 0.0002 36.9 14.1 162 148-310 35-218 (233)
160 3eg5_B Protein diaphanous homo 90.0 1.7 5.9E-05 43.9 10.8 158 325-509 102-282 (383)
161 3c2g_A SYS-1 protein; beta-cat 89.5 4 0.00014 39.4 11.9 136 80-235 260-402 (619)
162 1lsh_A Lipovitellin (LV-1N, LV 89.3 12 0.00041 43.6 18.7 133 293-479 393-542 (1056)
163 3qml_C Protein SLS1, nucleotid 89.0 6.1 0.00021 37.7 12.8 164 55-235 20-188 (315)
164 3a6p_A Exportin-5; exportin-5, 86.6 14 0.00046 44.0 17.2 224 262-523 26-278 (1204)
165 3eg5_B Protein diaphanous homo 86.5 29 0.00098 34.9 18.3 144 206-351 108-283 (383)
166 2bnx_A Diaphanous protein homo 86.0 12 0.00042 37.7 14.2 155 156-310 46-222 (386)
167 2bnx_A Diaphanous protein homo 85.3 5.6 0.00019 40.2 11.3 140 346-511 71-222 (386)
168 3qml_C Protein SLS1, nucleotid 79.5 31 0.001 32.9 12.9 135 131-277 43-188 (315)
169 2eqx_A Kelch repeat and BTB do 78.7 2.4 8.1E-05 33.7 4.5 36 615-650 5-40 (105)
170 2vkp_A BTB/POZ domain-containi 78.3 2.6 8.9E-05 33.5 4.8 32 650-681 77-108 (109)
171 3o2t_A Symplekin; heat repeat, 70.4 90 0.0031 31.1 15.6 126 181-319 41-182 (386)
172 3o2t_A Symplekin; heat repeat, 67.5 70 0.0024 31.9 12.9 131 264-404 40-181 (386)
173 2r9r_B Paddle chimera voltage 65.7 12 0.0004 39.5 7.4 87 552-639 51-141 (514)
174 2yy9_A Zinc finger and BTB dom 64.8 6.4 0.00022 32.8 4.3 37 650-686 87-123 (135)
175 1r29_A B-cell lymphoma 6 prote 64.0 12 0.00042 30.5 5.9 32 650-681 95-126 (127)
176 1buo_A POZ domain, protein (pr 59.9 25 0.00086 28.3 7.0 32 650-681 89-120 (121)
177 3b84_A Zinc finger and BTB dom 58.6 12 0.00043 30.1 4.9 32 650-681 86-117 (119)
178 2vpk_A Myoneurin; transcriptio 57.9 23 0.00079 28.2 6.4 30 650-679 86-115 (116)
179 2q81_A MIZ-1 protein; BTB/POZ 57.9 11 0.00036 30.5 4.3 30 650-679 88-117 (119)
180 3gs3_A Symplekin, LD45768P; he 56.6 1.3E+02 0.0044 28.1 19.2 146 57-235 12-172 (257)
181 3gs3_A Symplekin, LD45768P; he 55.8 1.3E+02 0.0045 28.0 15.7 132 264-405 30-172 (257)
182 3htm_A Speckle-type POZ protei 53.5 11 0.00038 32.7 4.1 33 618-650 132-164 (172)
183 2if5_A Zinc finger and BTB dom 52.5 16 0.00055 29.4 4.6 29 650-678 91-119 (120)
184 3ldz_A STAM-1, signal transduc 52.1 23 0.00079 29.6 5.5 70 208-277 43-113 (140)
185 2z8h_A Transcription regulator 50.8 2.9 0.0001 35.1 -0.3 33 650-682 101-133 (138)
186 1mhq_A ADP-ribosylation factor 50.4 37 0.0013 28.6 6.6 71 208-278 39-116 (148)
187 1vsy_5 Proteasome activator BL 49.8 1.1E+02 0.0039 35.0 12.4 217 292-522 134-366 (997)
188 3s4w_B Protein FACD2, fanconi 49.4 3.9E+02 0.013 31.5 20.2 131 262-406 323-467 (1323)
189 1x5b_A Signal transducing adap 49.2 36 0.0012 29.3 6.4 70 208-277 53-124 (163)
190 3ldz_A STAM-1, signal transduc 48.9 22 0.00076 29.7 4.9 72 334-406 43-114 (140)
191 3g2s_A C-terminal fragment of 47.7 45 0.0015 28.1 6.6 71 208-278 49-126 (149)
192 1x5b_A Signal transducing adap 44.9 39 0.0013 29.0 6.0 95 302-406 30-125 (163)
193 3gae_A Protein DOA1; UFD3, CDC 43.8 41 0.0014 31.4 6.4 101 259-362 100-217 (253)
194 3hve_A Gigaxonin; ubiquitin, c 43.3 64 0.0022 30.0 7.9 32 650-681 99-130 (256)
195 1mhq_A ADP-ribosylation factor 42.7 43 0.0015 28.2 5.8 72 334-406 39-116 (148)
196 3g2s_A C-terminal fragment of 41.9 43 0.0015 28.2 5.6 72 334-406 49-126 (149)
197 3gae_A Protein DOA1; UFD3, CDC 40.7 21 0.00073 33.4 3.9 107 130-239 104-220 (253)
198 2ppi_A Gigaxonin; BTB domain, 40.5 15 0.0005 31.0 2.5 29 650-678 115-143 (144)
199 1juq_A ADP-ribosylation factor 40.5 39 0.0013 29.3 5.3 72 208-279 51-129 (171)
200 1vsy_5 Proteasome activator BL 39.0 1.1E+02 0.0037 35.2 10.0 106 250-362 134-245 (997)
201 4eoz_A Speckle-type POZ protei 38.7 15 0.00053 30.6 2.4 33 650-682 91-123 (145)
202 3pst_A Protein DOA1; protein d 37.6 1.5E+02 0.0052 29.9 9.6 129 350-521 243-389 (425)
203 3hqi_A Speckle-type POZ protei 35.8 27 0.00094 33.8 4.1 33 618-650 272-304 (312)
204 3m5b_A Zinc finger and BTB dom 35.2 27 0.00094 28.1 3.3 31 650-680 87-117 (119)
205 3zyq_A Hepatocyte growth facto 34.6 1.2E+02 0.0041 27.6 7.9 71 105-194 46-118 (226)
206 1juq_A ADP-ribosylation factor 34.1 56 0.0019 28.3 5.3 94 303-406 29-128 (171)
207 3l3f_X Protein DOA1, DOA1/UFD3 33.5 1.4E+02 0.0049 29.3 8.6 133 350-521 180-326 (362)
208 3pst_A Protein DOA1; protein d 32.5 52 0.0018 33.2 5.3 107 130-239 276-392 (425)
209 3zyq_A Hepatocyte growth facto 31.9 62 0.0021 29.6 5.5 72 334-406 46-118 (226)
210 2ast_A S-phase kinase-associat 31.8 88 0.003 26.6 6.2 63 618-682 49-126 (159)
211 2xpp_A IWS1, ECU08_0440; trans 31.5 2.3E+02 0.0077 23.6 9.1 78 238-319 50-135 (145)
212 3ga1_A Nucleus accumbens-assoc 31.1 18 0.00062 29.6 1.5 32 650-681 96-127 (129)
213 3i3n_A Kelch-like protein 11; 31.1 1.2E+02 0.004 28.6 7.7 32 650-681 107-138 (279)
214 4atg_A TAF6; transcription, TF 29.2 31 0.0011 30.6 2.8 115 59-193 42-161 (196)
215 1vdy_A Hypothetical protein (R 29.0 95 0.0032 25.8 5.5 73 450-522 48-131 (140)
216 3l3f_X Protein DOA1, DOA1/UFD3 28.7 48 0.0017 32.7 4.3 105 130-237 213-327 (362)
217 4atg_A TAF6; transcription, TF 27.5 2.9E+02 0.0099 24.4 8.7 111 291-405 40-161 (196)
218 1fs1_B SKP1, cyclin A/CDK2-ass 25.6 2.3E+02 0.0079 23.3 7.5 80 602-683 25-122 (141)
219 3vld_A DNA mismatch repair pro 25.6 1.7E+02 0.0057 30.0 7.6 202 5-234 17-223 (500)
220 2plx_B Peptide inhibitor; heli 24.0 59 0.002 17.0 2.0 21 656-676 2-22 (26)
221 3nfq_A Transcription factor IW 23.8 3.5E+02 0.012 23.2 9.3 78 238-319 65-150 (170)
222 1dvp_A HRS, hepatocyte growth 23.5 65 0.0022 29.2 4.0 71 105-194 43-115 (220)
223 2xpp_A IWS1, ECU08_0440; trans 21.5 3.5E+02 0.012 22.5 9.7 78 196-277 50-135 (145)
224 1dvp_A HRS, hepatocyte growth 21.5 1.1E+02 0.0036 27.8 5.0 72 334-406 43-115 (220)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=7.2e-37 Score=334.53 Aligned_cols=402 Identities=18% Similarity=0.271 Sum_probs=346.6
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC--hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHH
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~ 135 (720)
.++.+++.+.+. |...+..|+..+..+.+. ....+.+++.|+||.|+.+|...+. +.++..
T Consensus 77 ~l~~lv~~l~s~------d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~-----------~~~q~~ 139 (529)
T 3tpo_A 77 SVEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQFE 139 (529)
T ss_dssp CHHHHHHHHTSS------CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTC-----------HHHHHH
T ss_pred HHHHHHHHhcCC------CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCC-----------HHHHHH
Confidence 356677766665 667899999999987652 3345788999999999999976544 289999
Q ss_pred HHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHH
Q 004992 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (720)
Q Consensus 136 a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (720)
|+|+|+||+ .+++....+++.|+++.|+.+|.+++. ++++.|+|+|.|++..++..+..+...|+++.|+.
T Consensus 140 Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~--------~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~ 211 (529)
T 3tpo_A 140 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA 211 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHH
Confidence 999999999 788888999999999999999998877 99999999999999988999999999999999999
Q ss_pred hhcCCC-----HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHH
Q 004992 215 LLEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (720)
Q Consensus 215 ll~~~~-----~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~ 289 (720)
++..++ ..+...+++++.+++.+...........+++|.|+.++.+++++++..++|+|.+++...+.....+..
T Consensus 212 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~ 291 (529)
T 3tpo_A 212 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 291 (529)
T ss_dssp TTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT
T ss_pred HHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence 997654 467889999999999855444444444678999999999999999999999999999888888888889
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcch
Q 004992 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHN 369 (720)
Q Consensus 290 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (720)
.|+++.|+.++.+.++.++..++++|+|++.+++.....+.+.|+++.|+.+|.++++.+++.|+++|+|++. +....
T Consensus 292 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~--~~~~~ 369 (529)
T 3tpo_A 292 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA--GRQDQ 369 (529)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT--SCHHH
T ss_pred ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc--ccHHH
Confidence 9999999999999999999999999999998888888889999999999999999999999999999999998 35556
Q ss_pred hhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC--CCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHh
Q 004992 370 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 447 (720)
Q Consensus 370 ~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~ 447 (720)
...+.+.|+++.++.++.+.+..++..|+++|.|++.. ++....+++
T Consensus 370 ~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~------------------------------- 418 (529)
T 3tpo_A 370 IQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVH------------------------------- 418 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-------------------------------
T ss_pred HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------------------------------
Confidence 67788999999999999999999999999999999753 333334444
Q ss_pred hhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCc-------ccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHH
Q 004992 448 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-------DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 519 (720)
Q Consensus 448 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L 519 (720)
.++++.|+.+++++++.++..++.+|.++.... ..+..+.+.||+..|..|..+++.++...|...|-.-
T Consensus 419 --~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 419 --CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp --TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred --CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456778899999999999999999999985321 1345678899999999999999999999998888654
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.2e-36 Score=330.53 Aligned_cols=402 Identities=18% Similarity=0.272 Sum_probs=346.7
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC--hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
++.+|+.+.+. |.+.+..|+..++.+.+. ....+.+++.|+||.|+++|+..+. +.++..|
T Consensus 59 i~~~v~~l~s~------d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~-----------~~lq~~A 121 (510)
T 3ul1_B 59 VEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQFES 121 (510)
T ss_dssp HHHHHHHHTSS------CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTC-----------HHHHHHH
T ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCC-----------HHHHHHH
Confidence 67777777765 677899999999987652 2335788999999999999986544 2899999
Q ss_pred HHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHh
Q 004992 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (720)
Q Consensus 137 ~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (720)
+|+|+||+ .+++.+..+++.|++|.|+.+|.+++. ++++.|+|+|.|++.+.+..+..+...|+++.|+.+
T Consensus 122 a~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~--------~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l 193 (510)
T 3ul1_B 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193 (510)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH
Confidence 99999999 889999999999999999999998766 999999999999999888999999999999999999
Q ss_pred hcCCC-----HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHc
Q 004992 216 LEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (720)
Q Consensus 216 l~~~~-----~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~ 290 (720)
+..++ ..+...+++++.+++.+...........+++|.|+.++.+++++++..++++|.+|+..++.....+...
T Consensus 194 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 273 (510)
T 3ul1_B 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 273 (510)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred HHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhc
Confidence 98654 4678899999999998554444444446789999999999999999999999999998877777888899
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchh
Q 004992 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQ 370 (720)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 370 (720)
|+++.|+.++.+.+..++..++++|+|++.+++.....+.+.|+++.|+.+|.+++..+++.|+++|+|++. +.....
T Consensus 274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a--~~~~~~ 351 (510)
T 3ul1_B 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA--GRQDQI 351 (510)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT--SCHHHH
T ss_pred ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc--CcHHHH
Confidence 999999999999999999999999999998888888889999999999999999999999999999999998 355667
Q ss_pred hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC--CCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhh
Q 004992 371 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 448 (720)
Q Consensus 371 ~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (720)
..+.+.|+++.++.++.+.+..++..|+++|.|++.. .+....+++
T Consensus 352 ~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-------------------------------- 399 (510)
T 3ul1_B 352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH-------------------------------- 399 (510)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH--------------------------------
T ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH--------------------------------
Confidence 7788999999999999999999999999999999763 333333444
Q ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCc-------ccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHH
Q 004992 449 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-------DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 520 (720)
Q Consensus 449 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~ 520 (720)
.++++.|+.+++++++.++..++.+|.++.... ..+..+.+.||+..|..|..++++++...|...|-+.-
T Consensus 400 -~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 400 -CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp -TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred -CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 457778899999999999999999999986421 13456788999999999999999999999998886554
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=8.2e-36 Score=327.81 Aligned_cols=406 Identities=19% Similarity=0.258 Sum_probs=351.9
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-h-hhHHHHHhCCChHHHHHhhcCCC-CcccccCCCcchHHH
Q 004992 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E-EVVNWIVEGGAVPALVKHLQAPP-TSEADRNLKPFEHEV 132 (720)
Q Consensus 56 ~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~-~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~~~~~~~~v 132 (720)
...++.+++.|.+. |+.++..|++.|.+++.. + .....++..|+++.|+.+|.+.+ . .+
T Consensus 73 ~~~l~~lv~~L~s~------~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~------------~v 134 (528)
T 4b8j_A 73 LESLPAMIGGVYSD------DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFP------------QL 134 (528)
T ss_dssp --CHHHHHHHHTSS------CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCH------------HH
T ss_pred HHHHHHHHHHHcCC------CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCH------------HH
Confidence 34577888887654 667899999999999763 3 66788899999999999998875 4 89
Q ss_pred HHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHH
Q 004992 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (720)
Q Consensus 133 ~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (720)
+..|+++|++++ .+++.+..+...|+++.|+.+|.+.+. +++..|+++|.+++...+..+..+...|+++.
T Consensus 135 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~ 206 (528)
T 4b8j_A 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD--------DVREQAVWALGNVAGDSPKCRDLVLANGALLP 206 (528)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHH
Confidence 999999999999 678999999999999999999998655 99999999999999878888888999999999
Q ss_pred HHHhh-cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHc
Q 004992 212 LVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (720)
Q Consensus 212 L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~ 290 (720)
|+.++ .+.++.++..++++|.+|+.+.+... .....|+++.|+.++.++++.++..++++|++++...+...+.+.+.
T Consensus 207 Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 285 (528)
T 4b8j_A 207 LLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285 (528)
T ss_dssp HHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 99999 67789999999999999998543333 33457899999999999999999999999999998877777788899
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHHHhhhhcCcch
Q 004992 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQVITDMHN 369 (720)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 369 (720)
|+++.|+.++.++++.++..|+++|+|++.+++.....+.+.|+++.|+.+|.++ ++.++..|+++|+|++. +....
T Consensus 286 g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~--~~~~~ 363 (528)
T 4b8j_A 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA--GNKDQ 363 (528)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--SCHHH
T ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC--CCHHH
Confidence 9999999999999999999999999999987777788888999999999999998 99999999999999998 34455
Q ss_pred hhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC--CCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHh
Q 004992 370 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 447 (720)
Q Consensus 370 ~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~ 447 (720)
...+.+.|+++.|+.++.+.++.++..|+++|.+++.. ++....+.
T Consensus 364 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-------------------------------- 411 (528)
T 4b8j_A 364 IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLV-------------------------------- 411 (528)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--------------------------------
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH--------------------------------
Confidence 66788889999999999999999999999999999764 33333333
Q ss_pred hhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc------------cchhhhccCcHHHHHHhhcCCCchhhhhHHHH
Q 004992 448 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVA 515 (720)
Q Consensus 448 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~a 515 (720)
..++++.|+.++.++++.++..++.+|.+++...+ ....+.+.|+++.|..+..+++++++..|...
T Consensus 412 -~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~i 490 (528)
T 4b8j_A 412 -SEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKI 490 (528)
T ss_dssp -HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred -HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 34577789999999999999999999999975432 45677889999999999999999999999999
Q ss_pred HHHHHhhc
Q 004992 516 LFKLANKA 523 (720)
Q Consensus 516 L~~L~~~~ 523 (720)
+.++....
T Consensus 491 l~~~~~~e 498 (528)
T 4b8j_A 491 LEAYWMDE 498 (528)
T ss_dssp HHHHCC--
T ss_pred HHHHCCCc
Confidence 99887654
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.8e-35 Score=323.34 Aligned_cols=406 Identities=18% Similarity=0.258 Sum_probs=350.9
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC--hhhHHHHHhCCChHHHHHhhcCC-CCcccccCCCcchHHHH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAP-PTSEADRNLKPFEHEVE 133 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~~~~~~~~v~ 133 (720)
..++.+++.|.+. ++.++..|+..|.++... ......++..|+++.|+.+|.++ +. .++
T Consensus 87 ~~i~~lv~~L~s~------~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~------------~v~ 148 (530)
T 1wa5_B 87 QELPQMTQQLNSD------DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE------------MLQ 148 (530)
T ss_dssp CCHHHHHHHHSCS------SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCH------------HHH
T ss_pred HHHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCH------------HHH
Confidence 3467777776654 566899999999999763 44556788899999999999886 45 899
Q ss_pred HHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHH
Q 004992 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (720)
Q Consensus 134 ~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (720)
..|+++|++++ .+++.+..+...|+++.|+.+|.+.+. +++..|+++|.+++...+..+..+...|+++.|
T Consensus 149 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L 220 (530)
T 1wa5_B 149 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 220 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHH
Confidence 99999999999 678888999999999999999997655 999999999999998778888888889999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCC
Q 004992 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (720)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~ 292 (720)
+.++.+.++.++..++++|.+|+.+...........++++.|+.++.++++.++..++++|.+|+...+.....+.+.|+
T Consensus 221 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 300 (530)
T 1wa5_B 221 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRI 300 (530)
T ss_dssp HHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTC
T ss_pred HHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCc
Confidence 99999999999999999999999754233344555789999999999999999999999999999887777788888999
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhh
Q 004992 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAG 372 (720)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 372 (720)
++.|+.++.+.++.++..++++|.+++.+++.....+.+.|+++.|+.+|.++++.++..|+++|++++. +.+.....
T Consensus 301 v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~--~~~~~~~~ 378 (530)
T 1wa5_B 301 PKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA--GNTEQIQA 378 (530)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHH
T ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHHHHHH
Confidence 9999999999999999999999999998777777778889999999999999999999999999999998 34455566
Q ss_pred hhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC--C--CchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhh
Q 004992 373 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--E--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 448 (720)
Q Consensus 373 l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~--~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (720)
+.+.++++.|+.++.++++.++..++++|.+++.. + +....+.
T Consensus 379 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~--------------------------------- 425 (530)
T 1wa5_B 379 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLV--------------------------------- 425 (530)
T ss_dssp HHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHH---------------------------------
T ss_pred HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHH---------------------------------
Confidence 77899999999999999999999999999999763 2 2222333
Q ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc------------cchhhhccCcHHHHHHhhcCCCchhhhhHHHHH
Q 004992 449 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 516 (720)
Q Consensus 449 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL 516 (720)
..++++.|+.++.++++.++..++.+|.+++...+ ....+.+.|+++.|..+..+++++++..|..+|
T Consensus 426 ~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il 505 (530)
T 1wa5_B 426 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505 (530)
T ss_dssp HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34577889999999999999999999999976432 345678899999999999999999999999999
Q ss_pred HHHHhhc
Q 004992 517 FKLANKA 523 (720)
Q Consensus 517 ~~L~~~~ 523 (720)
.++....
T Consensus 506 ~~~~~~~ 512 (530)
T 1wa5_B 506 ETYFGEE 512 (530)
T ss_dssp HHHSSSC
T ss_pred HHHCCcc
Confidence 9887643
No 5
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.3e-35 Score=325.05 Aligned_cols=459 Identities=22% Similarity=0.220 Sum_probs=379.2
Q ss_pred hhhhhhhhhccccCCCCCchHHH-HH---HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCCh
Q 004992 31 QQQMQQREISSSSAGTSSSDARQ-AL---LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAV 106 (720)
Q Consensus 31 ~~~m~~~~~~~~~~~~~~~~~~~-~~---~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i 106 (720)
+.+.++..+...+.......... .. .+.++.+++.|.+. .|+.++..|+.+|.+++.+++++..+.+.|++
T Consensus 29 ~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i 103 (529)
T 1jdh_A 29 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGI 103 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCH
Confidence 34444554444444443333322 22 25677888877653 35668999999999999988899999999999
Q ss_pred HHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHH
Q 004992 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (720)
Q Consensus 107 ~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a 185 (720)
+.|+.++++++. .++..++++|.+++ .++..+..+.+.|+++.|+.++.+.+. +++..+
T Consensus 104 ~~L~~lL~~~~~------------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~--------~~~~~~ 163 (529)
T 1jdh_A 104 PALVKMLGSPVD------------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAIT 163 (529)
T ss_dssp HHHHHHTTCSCH------------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--------HHHHHH
T ss_pred HHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCH--------HHHHHH
Confidence 999999998766 89999999999999 667788888899999999999998654 888999
Q ss_pred HHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCC-HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHH
Q 004992 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 264 (720)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~ 264 (720)
+.+|.+++..+++.+..+...|+++.|+.++++++ ...+..++.+|.+++. ++.++..+.+.|+++.|+.++.++++.
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~ 242 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR 242 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChH
Confidence 99999999888888989999999999999997654 6677788999999996 788899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC
Q 004992 265 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344 (720)
Q Consensus 265 v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 344 (720)
++..++++|.|++...+... ...++++.|+.++.+.+++++..++++|.+++..++..+..+.+.|+++.|+.++.+
T Consensus 243 ~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence 99999999999986644321 124689999999999999999999999999998777788889999999999999975
Q ss_pred --CCHHHHHHHHHHHHHHhhhhcCcc---hhhhhhhcCCHHHHHHHhcCCC-hhHHHHHHHHHHhcccCCCchhHHHhhc
Q 004992 345 --PDVQLREMSAFALGRLAQVITDMH---NQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVG 418 (720)
Q Consensus 345 --~~~~v~~~a~~~L~~l~~~~~~~~---~~~~l~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 418 (720)
.++.++..|+++|++++. +.+. .+..+.+.|+++.|++++.+++ +.++..++++|.|++..+.+...+.+.|
T Consensus 320 ~~~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 397 (529)
T 1jdh_A 320 AGDREDITEPAICALRHLTS--RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 397 (529)
T ss_dssp HTTCHHHHHHHHHHHHHHTS--SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcC
Confidence 348999999999999987 2222 4567889999999999998876 6999999999999999888888999999
Q ss_pred ccccccchhhhhh----hh-------------------HHHHHHHHHHH-------HHhhhhhhHHHHHHHHHhcchhHH
Q 004992 419 GVQKLQDGEFIVQ----AT-------------------KDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQ 468 (720)
Q Consensus 419 ~v~~L~~~~~~~~----~~-------------------~~~~~~~~~~l-------~~~~~~~~~~~L~~ll~~~~~~v~ 468 (720)
+++.|........ .. ...+...+.++ ......++++.|+.++.+++++++
T Consensus 398 ~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~ 477 (529)
T 1jdh_A 398 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 477 (529)
T ss_dssp HHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred CHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHH
Confidence 9998776432211 10 01111222222 234577899999999999999999
Q ss_pred HHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHH
Q 004992 469 RRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 520 (720)
Q Consensus 469 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~ 520 (720)
..++++|.+++.+++.+..+.+.|+++.|..++.+++++++.+|.++|.+|+
T Consensus 478 ~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 478 RVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 9999999999988778888999999999999999999999999999999874
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=5.3e-36 Score=330.57 Aligned_cols=405 Identities=16% Similarity=0.175 Sum_probs=332.7
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
+.++.++..+.+. +..++..|++++.+++.++..|+.+.+.|+ +.|..++++.+. .+|..|
T Consensus 290 G~v~~li~Ll~s~------~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~------------~vr~~A 350 (810)
T 3now_A 290 GILQMILAMATTD------DELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKND------------GIRVRA 350 (810)
T ss_dssp THHHHHHHHHHSS------CHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCH------------HHHHHH
T ss_pred chHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCH------------HHHHHH
Confidence 5677777777665 566899999999999999999999999875 999999987665 899999
Q ss_pred HHHHHHhcc-Ch-hhHHHHHHcC----ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHH-hcCCc
Q 004992 137 AFALGLLAV-KP-EHQQLIVDNG----ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-MEGGI 209 (720)
Q Consensus 137 ~~~L~~L~~-~~-~~~~~~~~~~----~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i 209 (720)
+++|.+++. .. +........| .++.++++|.++..+. ++++.|+|+|.+|+. .+..+..++ +.|++
T Consensus 351 l~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~------~v~~~AveaLayLS~-~~~vk~~lv~d~g~I 423 (810)
T 3now_A 351 LVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDK------DIRRWAADGLAYLTL-DAECKEKLIEDKASI 423 (810)
T ss_dssp HHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCS------SHHHHHHHHHHHHTT-SHHHHHHHHHCHHHH
T ss_pred HHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHHhC-CcHHHHHHHHccchH
Confidence 999999972 21 2211122233 3667888888762111 899999999999998 455555555 57999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChh-----------------------------cH---HHHHhCCCHHHHHHh
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDE-----------------------------NK---NQIVECNALPTLILM 257 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-----------------------------~~---~~i~~~g~l~~L~~l 257 (720)
|.|+.++++++..++..++++|.||+.+.+. .+ +.+++.|++|.|+.+
T Consensus 424 p~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L 503 (810)
T 3now_A 424 HALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL 503 (810)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999999999999975421 12 677889999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhh--HHHhcCCh
Q 004992 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV--HIVQRGAV 335 (720)
Q Consensus 258 l~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~~ 335 (720)
++++++.+++.|+|+|.||+. ++..+..+++.|+++.|+.++.++++..++.|+|+|.|++........ .....+++
T Consensus 504 L~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aI 582 (810)
T 3now_A 504 AKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582 (810)
T ss_dssp HTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTH
T ss_pred HcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHH
Confidence 999999999999999999985 467889999999999999999999999999999999999864322111 00124689
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHH
Q 004992 336 RPLIEMLQSP-DVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 414 (720)
Q Consensus 336 ~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 414 (720)
|.|+.+|.++ +...+..|+++|.||+. ..++++..+.+.|+++.|+.++.+.++.++..|+++|+||+.+++.+..+
T Consensus 583 ppLv~LL~~~~~~l~~~eAl~AL~NLa~--~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~ 660 (810)
T 3now_A 583 RPLLNLLQQDCTALENFESLMALTNLAS--MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMF 660 (810)
T ss_dssp HHHHHTTSTTSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999999865 44556789999999998 23567888999999999999999999999999999999999877665554
Q ss_pred HhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcC-Ccccchhhhc-cC
Q 004992 415 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFID-GG 492 (720)
Q Consensus 415 ~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~-~~ 492 (720)
.+ ..+.++.|+.++.+++..+|..|+++|.+++. ++...+.+.+ .|
T Consensus 661 v~--------------------------------~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g 708 (810)
T 3now_A 661 EG--------------------------------NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIAS 708 (810)
T ss_dssp HS--------------------------------SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTT
T ss_pred Hh--------------------------------ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 42 12467789999999999999999999999988 4556666667 89
Q ss_pred cHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 493 GLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 493 ~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
+++.|+.++.+++.++|..|++++.|+...
T Consensus 709 ~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 709 WLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999974
No 7
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.5e-35 Score=327.52 Aligned_cols=438 Identities=22% Similarity=0.217 Sum_probs=372.7
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
..++.+++.|.+. .++.++..|+.+|.+++.+++.+..+.+.|+++.|+.+|++++. .++..|
T Consensus 56 ~~i~~Lv~~L~~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------~v~~~A 118 (644)
T 2z6h_A 56 QMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYA 118 (644)
T ss_dssp HHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH------------HHHHHH
T ss_pred ChHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH------------HHHHHH
Confidence 5677788887753 35668999999999999988899999999999999999998766 899999
Q ss_pred HHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHh
Q 004992 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (720)
Q Consensus 137 ~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (720)
+++|.+|+ ..+..+..+.+.|+++.|+.+|++.+. .++..++.+|.+++..+++.+..+...|+++.|+.+
T Consensus 119 ~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~--------~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~l 190 (644)
T 2z6h_A 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190 (644)
T ss_dssp HHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCH--------HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHH
Confidence 99999999 667788888899999999999998754 788888999999998788888899999999999999
Q ss_pred hcCCC-HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChH
Q 004992 216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (720)
Q Consensus 216 l~~~~-~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~ 294 (720)
+++.+ ..++..++.+|.+++. ++.++..+.+.|+++.|+.++.+++..++..++++|.|++...+.. ....++++
T Consensus 191 L~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~ 266 (644)
T 2z6h_A 191 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLG 266 (644)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHH
Confidence 98765 7788999999999996 7888999999999999999999999999999999999998654331 11236899
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-C-CHHHHHHHHHHHHHHhhhhcCc-chhh
Q 004992 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-DVQLREMSAFALGRLAQVITDM-HNQA 371 (720)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~-~~~v~~~a~~~L~~l~~~~~~~-~~~~ 371 (720)
.|+.++.+.+++++..++++|.+++..++..+..+.+.|+++.|+.++.+ + .+.++..|+++|++++...+.. ..+.
T Consensus 267 ~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 267 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999999999999999999998777788889999999999999976 3 3799999999999998721111 2345
Q ss_pred hhhhcCCHHHHHHHhcCCC-hhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhh-------------------
Q 004992 372 GIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ------------------- 431 (720)
Q Consensus 372 ~l~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~------------------- 431 (720)
.+.+.++++.|++++.+.+ +.++..++++|.||+..+.++..+.+.|+++.|........
T Consensus 347 ~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~ 426 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred HHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence 5778899999999998765 79999999999999998888889999999998877433211
Q ss_pred ----hhHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHh
Q 004992 432 ----ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 500 (720)
Q Consensus 432 ----~~~~~~~~~~~~l-------~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l 500 (720)
.....+..++.++ ......++++.|+.++.+++++++..++.+|.+++.+.+.+..+.+.|+++.|..+
T Consensus 427 ~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHH
Confidence 1111222223222 23447789999999999999999999999999999887788889999999999999
Q ss_pred hcCCCchhhhhHHHHHHHHHhhc
Q 004992 501 LGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 501 l~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+.++++++|..|+.+|.+|+.+.
T Consensus 507 l~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 507 LHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HcCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999764
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.9e-34 Score=313.31 Aligned_cols=376 Identities=22% Similarity=0.291 Sum_probs=322.3
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHH
Q 004992 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (720)
Q Consensus 56 ~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~ 134 (720)
.+.+|+++++|... .++.+|.+|+++|+|++. +++++..+++.|+||.|+.+|++++. ++++
T Consensus 99 ~G~ip~LV~lL~~~-----~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~------------~v~e 161 (510)
T 3ul1_B 99 AGLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISE 161 (510)
T ss_dssp TTHHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHH
T ss_pred CCCHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHH
Confidence 35788888888764 356799999999999988 58899999999999999999998877 9999
Q ss_pred HHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHH
Q 004992 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (720)
Q Consensus 135 ~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (720)
.|+|+|+||+ ++++++..+...|+++.|+.+|...+...... .+++.++|+|.+++.............++++.|+
T Consensus 162 ~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~---~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~ 238 (510)
T 3ul1_B 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC---GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 238 (510)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCH---HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhH---HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHH
Confidence 9999999999 78999999999999999999998765432222 6788999999999986655555555568899999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCCh
Q 004992 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (720)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l 293 (720)
.++.+++++++..++++|.+|+.+++.....+.+.|+++.|+.++.+++..++..++++|+|++..++..+..+++.|++
T Consensus 239 ~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l 318 (510)
T 3ul1_B 239 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 318 (510)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccch
Confidence 99999999999999999999998777778888899999999999999999999999999999999988888999999999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhh
Q 004992 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGI 373 (720)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l 373 (720)
+.|+.++.+++..+++.++|+|.|++.+++.....+.+.|+++.|+.++.+.+..++..|+++|+|++..+ ..+....+
T Consensus 319 ~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~-~~~~~~~L 397 (510)
T 3ul1_B 319 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG-TVEQIVYL 397 (510)
T ss_dssp GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-CHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC-CHHHHHHH
Confidence 99999999999999999999999999888888888999999999999999999999999999999999832 45566778
Q ss_pred hhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCC---chhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhh
Q 004992 374 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED---NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 450 (720)
Q Consensus 374 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (720)
.+.|+++.|+++|.++++.++..++++|.||....+ ....+. ..+-..
T Consensus 398 ~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~-----------------------------~~iee~ 448 (510)
T 3ul1_B 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS-----------------------------IMIEEC 448 (510)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHH-----------------------------HHHHHT
T ss_pred HHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHH-----------------------------HHHHHc
Confidence 999999999999999999999999999999964211 100000 011234
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHhhcCC
Q 004992 451 RVLNHLLYLMRVAEKGVQRRVALALAHLCSP 481 (720)
Q Consensus 451 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 481 (720)
+.+..+-.+..+++.++...|..+|-.+-..
T Consensus 449 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 449 GGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 5667777788889999999999999777543
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.3e-34 Score=316.65 Aligned_cols=375 Identities=22% Similarity=0.294 Sum_probs=321.4
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHH
Q 004992 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (720)
Q Consensus 56 ~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~ 134 (720)
.+.+|.++++|... .++.++.+|+++|.|++.+ ++.+..+++.|++|.|+.+|.+++. ++++
T Consensus 118 ~G~ip~Lv~lL~~~-----~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~------------~v~e 180 (529)
T 3tpo_A 118 AGLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISE 180 (529)
T ss_dssp TTHHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHH
T ss_pred CCCHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHH
Confidence 45788888888664 3567899999999999985 7888899999999999999999877 9999
Q ss_pred HHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHH
Q 004992 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (720)
Q Consensus 135 ~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (720)
.|+|+|+||+ ++++++..+...|+++.|+.+|.......... .+++.++|+|.+++.............+++|.|+
T Consensus 181 ~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~---~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~ 257 (529)
T 3tpo_A 181 QAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC---GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 257 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCH---HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHH---HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHH
Confidence 9999999999 78999999999999999999998765432221 6788999999999986655555555678899999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCCh
Q 004992 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (720)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l 293 (720)
.++.+++++++..++++|.+++.++++....+...|+++.|+.++.+++..++..++++|+|++.+++.....+++.|++
T Consensus 258 ~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l 337 (529)
T 3tpo_A 258 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 337 (529)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred HHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccH
Confidence 99999999999999999999998777888888899999999999999999999999999999999888888999999999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhh
Q 004992 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGI 373 (720)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l 373 (720)
+.|+.++.++++.++..|+|+|+|++.+++.....+.+.|++|.|+.++.+.+..++..|+++|+|++..+ ..+....+
T Consensus 338 ~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~-~~~~~~~l 416 (529)
T 3tpo_A 338 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGG-TVEQIVYL 416 (529)
T ss_dssp GGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CHHHHHHH
Confidence 99999999999999999999999999988888888999999999999999999999999999999999832 45566779
Q ss_pred hhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCC---CchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhh
Q 004992 374 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE---DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 450 (720)
Q Consensus 374 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (720)
.+.|+++.|+++|.++++.++..++++|.||.... .....+. ..+...
T Consensus 417 ~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~-----------------------------~~iee~ 467 (529)
T 3tpo_A 417 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS-----------------------------IMIEEC 467 (529)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHH-----------------------------HHHHHT
T ss_pred HHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHH-----------------------------HHHHHC
Confidence 99999999999999999999999999999986321 1100000 011133
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHhhcC
Q 004992 451 RVLNHLLYLMRVAEKGVQRRVALALAHLCS 480 (720)
Q Consensus 451 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 480 (720)
+.+..+-.+..+++.++...|..+|-..-.
T Consensus 468 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 468 GGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp TCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 456666667788899999999999876643
No 10
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.6e-34 Score=325.84 Aligned_cols=436 Identities=22% Similarity=0.229 Sum_probs=368.9
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
..++.+++.|... .+..++..|+.+|.+++.+++++..+.+.|+++.|+.+|++.+. .++..|
T Consensus 192 ~~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~------------~v~~~A 254 (780)
T 2z6g_A 192 QMVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD------------SVLFHA 254 (780)
T ss_dssp HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred ChHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHH
Confidence 3556666666543 36678999999999999988888899999999999999998766 899999
Q ss_pred HHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHh
Q 004992 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (720)
Q Consensus 137 ~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (720)
+++|.+|+ ..++.+..+...|+++.|+.+|++.+. .++..++.+|.+++..+++.+..+...|+++.|+.+
T Consensus 255 ~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--------~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~l 326 (780)
T 2z6g_A 255 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326 (780)
T ss_dssp HHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 99999999 667888888899999999999998554 889999999999998788888889999999999999
Q ss_pred hcCCC-HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChH
Q 004992 216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (720)
Q Consensus 216 l~~~~-~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~ 294 (720)
+++.+ ...+..++.+|.+|+. .+.++..+++.|+++.|+.++.+.+..++..++++|.+|+...... ....++++
T Consensus 327 L~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~ 402 (780)
T 2z6g_A 327 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLG 402 (780)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHH
Confidence 98765 5566788999999996 7788899999999999999999999999999999999998654331 11246789
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CC-HHHHHHHHHHHHHHhhhhcCcc---h
Q 004992 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PD-VQLREMSAFALGRLAQVITDMH---N 369 (720)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~-~~v~~~a~~~L~~l~~~~~~~~---~ 369 (720)
.|+.++.+.+++++..++++|.+++..++..+..+.+.|+++.|+.+|.+ .+ ..++..|+++|++|+. ...+ .
T Consensus 403 ~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~--~~~~~~~~ 480 (780)
T 2z6g_A 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS--RHQDAEMA 480 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS--SSTTHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh--cCchHHHH
Confidence 99999999999999999999999998777788888999999999999976 33 4999999999999987 2222 2
Q ss_pred hhhhhhcCCHHHHHHHhcCCCh-hHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhh-----------------
Q 004992 370 QAGIAHNGGLVPLLKLLDSKNG-SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ----------------- 431 (720)
Q Consensus 370 ~~~l~~~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~----------------- 431 (720)
+..+...++++.|++++.+.+. .++..++++|.||+..+.+...+.+.|+++.|........
T Consensus 481 ~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~ 560 (780)
T 2z6g_A 481 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 560 (780)
T ss_dssp HHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCS
T ss_pred HHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhh
Confidence 4567888999999999987764 9999999999999988888888889999988776433211
Q ss_pred ------hhHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHH
Q 004992 432 ------ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 498 (720)
Q Consensus 432 ------~~~~~~~~~~~~l-------~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~ 498 (720)
.....+..++.++ ......++++.|+.++.++++.++..|+.+|.+++.+.+.+..+.+.|+++.|.
T Consensus 561 ~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~ 640 (780)
T 2z6g_A 561 EGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 640 (780)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHH
T ss_pred cccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHH
Confidence 1112222333333 224578899999999999999999999999999998888888899999999999
Q ss_pred HhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 499 GLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 499 ~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.++.++++++|..|+++|.+++.+.
T Consensus 641 ~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 641 ELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999865
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-34 Score=317.64 Aligned_cols=409 Identities=18% Similarity=0.208 Sum_probs=330.7
Q ss_pred hHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHH-hCCChHHHHHhhcCCCCcccccCCCc
Q 004992 50 DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIV-EGGAVPALVKHLQAPPTSEADRNLKP 127 (720)
Q Consensus 50 ~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~~~~~ 127 (720)
...+.....+...+...... ++.+-...|++++.++... ++....++ ..|+++.|+.++.+.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~--------- 304 (810)
T 3now_A 239 EAKARFTDQIDEYIKDKLLA-----PDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDE--------- 304 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-----CCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCH---------
T ss_pred hhHHHHHHHHHHHHHHHhcc-----CChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCH---------
Confidence 33344444444444333322 2333478999999999985 66666666 78999999999998877
Q ss_pred chHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCc-hhhHHHHhc
Q 004992 128 FEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRME 206 (720)
Q Consensus 128 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~ 206 (720)
.++++|+|++++++.++.+|+.+.+.|+ +.|+.+++..++ .++..|+++|+++..... .........
T Consensus 305 ---~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~--------~vr~~Al~~L~kl~s~~~~d~~~~~~~~ 372 (810)
T 3now_A 305 ---LQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKND--------GIRVRALVGLCKLGSYGGQDAAIRPFGD 372 (810)
T ss_dssp ---HHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCH--------HHHHHHHHHHHHHHTTTTTTTSCCSSTT
T ss_pred ---HHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCH--------HHHHHHHHHHHHhccccccCccccchhh
Confidence 8999999999999988999999999875 999999986554 889999999999975221 111112223
Q ss_pred C----CcHHHHHhhcCC--CHHHHHHHHHHHHHhccCChhcHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 004992 207 G----GIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (720)
Q Consensus 207 ~----~i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~ 279 (720)
| .++.+.++|.++ +.+++..|+++|.+|+. .+..+..++ +.|++|.|+.+++++++.++..++++|.||+.+
T Consensus 373 g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~ 451 (810)
T 3now_A 373 GAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNA 451 (810)
T ss_dssp THHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence 3 356788888887 88999999999999997 667777766 579999999999999999999999999999975
Q ss_pred Ccc-----------------------------h---HHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhh
Q 004992 280 SPN-----------------------------I---KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (720)
Q Consensus 280 ~~~-----------------------------~---~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (720)
.+. . .+.+++.|+++.|+.++.++++.+++.|+|+|.|++. +++++.
T Consensus 452 ~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~ 530 (810)
T 3now_A 452 YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRG 530 (810)
T ss_dssp SCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHH
T ss_pred chhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHH
Confidence 421 1 2678899999999999999999999999999999985 677899
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhh---hhcCCHHHHHHHhcCC-ChhHHHHHHHHHHh
Q 004992 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGI---AHNGGLVPLLKLLDSK-NGSLQHNAAFALYG 403 (720)
Q Consensus 328 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l---~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~ 403 (720)
.+++.|++|.|+.+|.++++..++.|+++|.+++. +......+ ...+++++|+.++.++ +...+..|+++|.|
T Consensus 531 ~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~---~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~N 607 (810)
T 3now_A 531 KVVQEGGVKALLRMALEGTEKGKRHATQALARIGI---TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607 (810)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---HSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhc---CCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997 22222211 1235899999999865 34456789999999
Q ss_pred cccCC-CchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCc
Q 004992 404 LADNE-DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 404 l~~~~-~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 482 (720)
|+..+ +.+..+++.| .++.|+.++.++++.+|..|+++|+|++.++
T Consensus 608 La~~~d~~~~~Ii~aG---------------------------------~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~ 654 (810)
T 3now_A 608 LASMNESVRQRIIKEQ---------------------------------GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE 654 (810)
T ss_dssp HTTSCHHHHHHHHHTT---------------------------------HHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH
T ss_pred HhcCCHHHHHHHHHcC---------------------------------CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 99864 4455555544 5677889999999999999999999999988
Q ss_pred ccchhhhc-cCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 483 DQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 483 ~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
+.+..+.+ .|+++.|+.++.+++..+|..|+++|.+|+..
T Consensus 655 ~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV 695 (810)
T ss_dssp HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence 87766665 68999999999999999999999999999974
No 12
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.7e-33 Score=308.50 Aligned_cols=436 Identities=21% Similarity=0.247 Sum_probs=361.4
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhC-CChHHHHHhhcCC-CCcccccCCCcchHHH
Q 004992 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEV 132 (720)
Q Consensus 55 ~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~-~~~~~~~~~~~~~~~v 132 (720)
..+.++.+++.|.+. |+.++..|+.+|.+++.++..+..+... |+++.|+.+|.+. ++ ++
T Consensus 15 ~~~~i~~Lv~lL~~~------~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~------------~~ 76 (529)
T 1jdh_A 15 ATRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------------ET 76 (529)
T ss_dssp --CHHHHHHHHHTCS------CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCH------------HH
T ss_pred hHhhHHHHHHHhCCC------CHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCH------------HH
Confidence 344688888877754 6779999999999999987777777755 8999999999754 44 89
Q ss_pred HHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHH
Q 004992 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (720)
Q Consensus 133 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (720)
+..++++|.+|+.+++.+..+.+.|+++.|+.+|+++++ +++..++++|.+++..++..+..+.+.|+++.|
T Consensus 77 ~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 148 (529)
T 1jdh_A 77 ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148 (529)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHH
Confidence 999999999999778899999999999999999998765 999999999999999877788888889999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCCcchHHHHHHcC
Q 004992 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (720)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~-~v~~~a~~~L~nL~~~~~~~~~~~~~~~ 291 (720)
+.++.++++.++..++.+|.+++.++++++..+.+.|+++.|+.++++.++ ..+..++.+|.+++. ++..+..+.+.|
T Consensus 149 ~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g 227 (529)
T 1jdh_A 149 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAG 227 (529)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCC
Confidence 999999999999999999999998889999999999999999999987654 566778999999986 466788899999
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhh
Q 004992 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQA 371 (720)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 371 (720)
+++.|+.++.+++++++..++++|.+++...+... ...++++.|+.++.+.++.++..|+++|++++. ++++++.
T Consensus 228 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~--~~~~~~~ 302 (529)
T 1jdh_A 228 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC--NNYKNKM 302 (529)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--TCHHHHH
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHHHH
Confidence 99999999999999999999999999997543221 234789999999999999999999999999998 3456888
Q ss_pred hhhhcCCHHHHHHHhcC--CChhHHHHHHHHHHhcccCC-C---chhHHHhhcccccccchhhhhh--hhHHHHHHHHHH
Q 004992 372 GIAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNE-D---NVADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKR 443 (720)
Q Consensus 372 ~l~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~-~---~~~~l~~~~~v~~L~~~~~~~~--~~~~~~~~~~~~ 443 (720)
.+.+.|+++.+++++.+ .++.++..++++|+||+... + .+..+.+.|+++.|.+...... .....+...+.+
T Consensus 303 ~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~n 382 (529)
T 1jdh_A 303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382 (529)
T ss_dssp HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHH
Confidence 89999999999999964 34899999999999998753 2 2557888899988776433221 122222223333
Q ss_pred H-------HHhhhhhhHHHHHHHHHhcchhHHHHH----------------------HHHHHhhcCCcccchhhhccCcH
Q 004992 444 L-------EEKIHGRVLNHLLYLMRVAEKGVQRRV----------------------ALALAHLCSPDDQRTIFIDGGGL 494 (720)
Q Consensus 444 l-------~~~~~~~~~~~L~~ll~~~~~~v~~~a----------------------~~~L~~l~~~~~~~~~~~~~~~~ 494 (720)
+ ......++++.|+.++.++++.+|..| +.+|++++.+.+++..+.+.|++
T Consensus 383 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v 462 (529)
T 1jdh_A 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462 (529)
T ss_dssp HTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCH
T ss_pred HhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCc
Confidence 3 234467899999999999888877744 45666677777777788999999
Q ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 495 ELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 495 ~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
+.|+.++.+++++++..|+++|.+|+.+
T Consensus 463 ~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 463 PLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999864
No 13
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=297.79 Aligned_cols=367 Identities=19% Similarity=0.219 Sum_probs=299.7
Q ss_pred HHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCCh-
Q 004992 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGAL- 159 (720)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l- 159 (720)
+..+.|..+..+++.|..+++.|++|.|+++|+..+.+...-+....+++++..|+|+|.||+ ..|+......+.+++
T Consensus 48 ~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~ 127 (458)
T 3nmz_A 48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH 127 (458)
T ss_dssp HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 478889999999889999999999999999999654311111111234599999999999999 788887777777777
Q ss_pred ---------HHHHHHHhccCCCcc------chhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC------
Q 004992 160 ---------SHLVNLLKRHMDSNC------SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------ 218 (720)
Q Consensus 160 ---------~~L~~lL~~~~~~~~------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------ 218 (720)
+.+++++........ ..+.......|+|+|.|++. ++++|..+.+.|+++.|+.++..
T Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~ 206 (458)
T 3nmz_A 128 LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYG 206 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred HHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccc
Confidence 666777766531110 01111334589999999987 58899999999999999999942
Q ss_pred -----CCHHHHHHHHHHHHHhccCChhcHHHHHh-CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CcchHHHHHHcC
Q 004992 219 -----TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAG 291 (720)
Q Consensus 219 -----~~~~v~~~a~~~L~~L~~~~~~~~~~i~~-~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~-~~~~~~~~~~~~ 291 (720)
.++.++..|+++|.||+.+++.++..+.. .|++|.|+.+|.+++++++..|+++|.||+.. ++..+..+.+.|
T Consensus 207 ~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G 286 (458)
T 3nmz_A 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286 (458)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 24779999999999999877777777754 56699999999999999999999999999875 567788899999
Q ss_pred ChHHHHHhh-ccCChHHHHHHHHHHHHHhccCcchhhHHH-hcCChHHHHHHhcCCCH----HHHHHHHHHHHHHhhh-h
Q 004992 292 ALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEMLQSPDV----QLREMSAFALGRLAQV-I 364 (720)
Q Consensus 292 ~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~----~v~~~a~~~L~~l~~~-~ 364 (720)
+++.|+.+| .+.+..+++.++.+|+||+..+++++..+. ..|+++.|+.+|.+.+. .+++.|+++|.|++.+ .
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 999999975 556789999999999999975666777776 78999999999987554 5999999999999942 1
Q ss_pred cCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcc-cCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHH
Q 004992 365 TDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR 443 (720)
Q Consensus 365 ~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~ 443 (720)
+.++++..+.+.|+++.|+.+|.+.+..+++.|+++|+||+ .+++++..+.+.|
T Consensus 367 ~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G------------------------- 421 (458)
T 3nmz_A 367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG------------------------- 421 (458)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT-------------------------
T ss_pred CCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCC-------------------------
Confidence 26678888999999999999999999999999999999998 4677777777766
Q ss_pred HHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCc
Q 004992 444 LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 444 l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 482 (720)
.++.|+.+++++++.++..|+++|.||+.+.
T Consensus 422 --------~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 422 --------AVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp --------HHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred --------CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 5667888999999999999999999998764
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.5e-33 Score=300.97 Aligned_cols=373 Identities=19% Similarity=0.228 Sum_probs=307.2
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
.++.+|++|.+. +..++..|++.|.+++. +++++..+++.|+||.|+.+|++++. ++++.|
T Consensus 49 ~i~~LV~~L~s~------~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~------------~vq~~A 110 (584)
T 3l6x_A 49 ELPEVIAMLGFR------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK------------EVHLGA 110 (584)
T ss_dssp CHHHHHHHTTCS------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH------------HHHHHH
T ss_pred cHHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH------------HHHHHH
Confidence 378888888765 56689999999999997 68999999999999999999998877 999999
Q ss_pred HHHHHHhcc--ChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHH
Q 004992 137 AFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (720)
Q Consensus 137 ~~~L~~L~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (720)
+++|.||+. +++++..+.+.|+|+.|+.+|....+. ++++.++++|.+|+. ++.++..+.. ++++.|++
T Consensus 111 a~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~-------~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~ 181 (584)
T 3l6x_A 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM-------DLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTD 181 (584)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSH-------HHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCH-------HHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHH
Confidence 999999994 599999999999999999999975432 899999999999998 6778887875 67999999
Q ss_pred hhc------------------CCCHHHHHHHHHHHHHhccCChhcHHHHHhC-CCHHHHHHhhcC------CCHHHHHHH
Q 004992 215 LLE------------------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEA 269 (720)
Q Consensus 215 ll~------------------~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~-g~l~~L~~ll~~------~~~~v~~~a 269 (720)
++. ..++.++..|+++|.||+..++..++.+.+. |+++.|+.++++ .+...++.|
T Consensus 182 LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena 261 (584)
T 3l6x_A 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261 (584)
T ss_dssp HTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred HHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence 771 2357999999999999998777888888875 556899999874 456789999
Q ss_pred HHHHHHhhcCCcc-------h------------------HHHHHHcCChHHHHHhhcc-CChHHHHHHHHHHHHHhccCc
Q 004992 270 VGVIGNLVHSSPN-------I------------------KKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDS 323 (720)
Q Consensus 270 ~~~L~nL~~~~~~-------~------------------~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~ 323 (720)
+++|.||+..... . ...+...++++.++.++.. .++.+++.|+++|.||+.+..
T Consensus 262 v~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 9999999854110 0 0111122446778889964 579999999999999987542
Q ss_pred ----chhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCC--------Ch
Q 004992 324 ----DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSK--------NG 391 (720)
Q Consensus 324 ----~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~--------~~ 391 (720)
..+..+.+.+++|.|+.+|.+++..+++.|+++|+||+. +..++..+ ..|+++.|+.+|.+. +.
T Consensus 342 ~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~---~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~ 417 (584)
T 3l6x_A 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV---DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSE 417 (584)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT---TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCH
T ss_pred cccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhC---ChhHHHHH-HhCCHHHHHHHhcCCcccccccchH
Confidence 223345567889999999999999999999999999999 77777665 678999999999765 35
Q ss_pred hHHHHHHHHHHhcc-cCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc--chhHH
Q 004992 392 SLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQ 468 (720)
Q Consensus 392 ~v~~~a~~~L~~l~-~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~--~~~v~ 468 (720)
.++..++++|.||+ .++++...+.+.| .++.|+.+++++ .+.++
T Consensus 418 ~v~~~a~~tL~NL~a~~~~~~~~I~~~g---------------------------------~I~~Lv~LL~s~~~~~~v~ 464 (584)
T 3l6x_A 418 DTVISILNTINEVIAENLEAAKKLRETQ---------------------------------GIEKLVLINKSGNRSEKEV 464 (584)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTT---------------------------------HHHHHHHHHTCSSSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCC---------------------------------ChHHHHHHHhCCCCChHHH
Confidence 78899999999995 4677777777766 555688888886 88999
Q ss_pred HHHHHHHHhhcCCcccchhhhccCcH
Q 004992 469 RRVALALAHLCSPDDQRTIFIDGGGL 494 (720)
Q Consensus 469 ~~a~~~L~~l~~~~~~~~~~~~~~~~ 494 (720)
..|+++|+++..+.+.+..+.+.|.-
T Consensus 465 k~Aa~vL~nl~~~~elr~~~kk~G~~ 490 (584)
T 3l6x_A 465 RAAALVLQTIWGYKELRKPLEKEGWK 490 (584)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHcCHHHHHHHHHcCCC
Confidence 99999999999999888887776654
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.5e-33 Score=299.32 Aligned_cols=368 Identities=18% Similarity=0.188 Sum_probs=307.2
Q ss_pred HhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhh
Q 004992 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (720)
Q Consensus 101 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~ 179 (720)
...+.++.|+.+|.+.+. +++..|+++|.+|+ .+++.+..+.+.|+|+.|+.+|++.+.
T Consensus 45 ~~~~~i~~LV~~L~s~~~------------~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~-------- 104 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLD------------AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK-------- 104 (584)
T ss_dssp CCCCCHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH--------
T ss_pred cccccHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH--------
Confidence 346799999999998776 89999999999999 789999999999999999999998766
Q ss_pred HHHHHHHHHHHHhhhc-CchhhHHHHhcCCcHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHh
Q 004992 180 SVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~l 257 (720)
++++.|+++|.||+.. +++++..+.+.|+++.|+.+|++ .+.++++.++++|++|+. ++.++..+++ +++|.|+.+
T Consensus 105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~L 182 (584)
T 3l6x_A 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDE 182 (584)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHH
Confidence 9999999999999985 68899999999999999999986 678999999999999997 7888888886 579999997
Q ss_pred hc------------------CCCHHHHHHHHHHHHHhhcCCcchHHHHHHc-CChHHHHHhhcc------CChHHHHHHH
Q 004992 258 LR------------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAA 312 (720)
Q Consensus 258 l~------------------~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~~~~~a~ 312 (720)
+. .++++++..|+++|.||+..++..++.+.+. |+++.|+.++++ .+....+.|+
T Consensus 183 L~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav 262 (584)
T 3l6x_A 183 VIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCV 262 (584)
T ss_dssp THHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHH
T ss_pred HhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHH
Confidence 71 2357999999999999998877878888885 456799999875 4567899999
Q ss_pred HHHHHHhccCc-------------------------chhhHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHHHhhhhcC
Q 004992 313 LLLGQFAATDS-------------------------DCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITD 366 (720)
Q Consensus 313 ~~L~~l~~~~~-------------------------~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 366 (720)
++|.||+.... .....+.+.++++.|+.+|+ +.++.+++.|+++|.||+. +.
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~a--g~ 340 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCA--GR 340 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHS--SC
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHc--CC
Confidence 99999985311 01112233455678888995 4689999999999999997 22
Q ss_pred c----chhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHH
Q 004992 367 M----HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 442 (720)
Q Consensus 367 ~----~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~ 442 (720)
. ..+..+.+.++++.|+++|.+++..++..++++|+||+.++.++..+ ..
T Consensus 341 ~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~------------------------- 394 (584)
T 3l6x_A 341 WTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GK------------------------- 394 (584)
T ss_dssp SHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HH-------------------------
T ss_pred ccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-Hh-------------------------
Confidence 1 23345566789999999999999999999999999999987765433 33
Q ss_pred HHHHhhhhhhHHHHHHHHHhc--------chhHHHHHHHHHHhhcC-CcccchhhhccCcHHHHHHhhcCC--Cchhhhh
Q 004992 443 RLEEKIHGRVLNHLLYLMRVA--------EKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGST--NPKQQLD 511 (720)
Q Consensus 443 ~l~~~~~~~~~~~L~~ll~~~--------~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~ 511 (720)
+.++.|+.+|.++ +.+++..|+++|.|++. +.++.+.+.+.|+++.|+.+++++ .+.++..
T Consensus 395 --------g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~ 466 (584)
T 3l6x_A 395 --------HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRA 466 (584)
T ss_dssp --------HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHH
T ss_pred --------CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHH
Confidence 3667788888776 35788999999999965 456888899999999999999986 7789999
Q ss_pred HHHHHHHHHhhcccc
Q 004992 512 GAVALFKLANKATTL 526 (720)
Q Consensus 512 a~~aL~~L~~~~~~~ 526 (720)
|+++|++|..+....
T Consensus 467 Aa~vL~nl~~~~elr 481 (584)
T 3l6x_A 467 AALVLQTIWGYKELR 481 (584)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHcCHHHH
Confidence 999999999766433
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2e-33 Score=303.02 Aligned_cols=401 Identities=16% Similarity=0.219 Sum_probs=342.2
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc---ChhhHHHHHhC-CChHHHHHhhcCC-CCcccccCCCcchHHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK---NEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVE 133 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~---~~~~~~~~~~~-g~i~~L~~ll~~~-~~~~~~~~~~~~~~~v~ 133 (720)
++.+++.|.+. |+.++..|+..|..+.. ++.. ..+++. |+++.|+.+|++. +. .++
T Consensus 22 l~~l~~~l~s~------~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~------------~v~ 82 (450)
T 2jdq_A 22 TSDMIEMIFSK------SPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENC------------TLQ 82 (450)
T ss_dssp CHHHHHHHHSS------CHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCH------------HHH
T ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCH------------HHH
Confidence 67777777654 66689999999999754 3333 446666 9999999999887 44 899
Q ss_pred HHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHH
Q 004992 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (720)
Q Consensus 134 ~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (720)
..|+++|.+++ .+++....+...|+++.|+.+|++++. +++..|+++|.+++...+..+..+...|+++.|
T Consensus 83 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--------~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 154 (450)
T 2jdq_A 83 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE--------DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPL 154 (450)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHH
Confidence 99999999999 677888888899999999999998655 999999999999999777888888889999999
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHhccCC-hhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHc
Q 004992 213 VELLEF-TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (720)
Q Consensus 213 ~~ll~~-~~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~ 290 (720)
+.++.+ .+..++..++++|.+++.+. +.....+. .+++|.|+.++.++++.++..++++|.+++...+.....+...
T Consensus 155 ~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 233 (450)
T 2jdq_A 155 LQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA 233 (450)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHc
Confidence 999985 78999999999999999754 33333333 6799999999999999999999999999998777777788889
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchh
Q 004992 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQ 370 (720)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 370 (720)
|+++.|+.++.+.++.++..++++|.+++.+++.....+.+.|+++.|+.++.++++.++..|+++|++++. +.+...
T Consensus 234 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~--~~~~~~ 311 (450)
T 2jdq_A 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA--GNRAQI 311 (450)
T ss_dssp TTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT--SCHHHH
T ss_pred CcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHHHH
Confidence 999999999999999999999999999998776667778888999999999999999999999999999997 345556
Q ss_pred hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC--CCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhh
Q 004992 371 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 448 (720)
Q Consensus 371 ~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (720)
..+.+.++++.+++++.++++.++..++++|.+++.. ++....++
T Consensus 312 ~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~--------------------------------- 358 (450)
T 2jdq_A 312 QTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV--------------------------------- 358 (450)
T ss_dssp HHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHH---------------------------------
T ss_pred HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH---------------------------------
Confidence 6677889999999999999999999999999999753 23322233
Q ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc------------cchhhhccCcHHHHHHhhcCCCchhhhhHHHHH
Q 004992 449 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 516 (720)
Q Consensus 449 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL 516 (720)
..++++.|+.++.++++.++..++.+|.+++...+ ....+.+.|+++.|..++.+++++++..|..+|
T Consensus 359 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l 438 (450)
T 2jdq_A 359 ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438 (450)
T ss_dssp HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34577889999999999999999999999976432 235677889999999999999999999999999
Q ss_pred HHHHhh
Q 004992 517 FKLANK 522 (720)
Q Consensus 517 ~~L~~~ 522 (720)
.++-..
T Consensus 439 ~~~~~~ 444 (450)
T 2jdq_A 439 EHYFGT 444 (450)
T ss_dssp HHHHCC
T ss_pred HHHCCc
Confidence 988754
No 17
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=305.78 Aligned_cols=436 Identities=20% Similarity=0.235 Sum_probs=365.0
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhC-CChHHHHHhhcCCCCcccccCCCcchHHHHHH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~ 135 (720)
+.++.+++.|.+. ++.++..|+.+|.+++.++..+..+... |+++.|+.+|.+... ++++..
T Consensus 14 g~i~~Lv~lL~~~------~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~-----------~~~~~~ 76 (644)
T 2z6h_A 14 RAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARC 76 (644)
T ss_dssp TTHHHHHHHHTCS------CHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC-----------HHHHHH
T ss_pred chHHHHHHHHcCC------CHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC-----------HHHHHH
Confidence 3477778877653 6679999999999999987777777655 899999999986522 289999
Q ss_pred HHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHh
Q 004992 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (720)
Q Consensus 136 a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (720)
|+.+|.+|+.+++.+..+.+.|+++.|+.+|++.+. +++..|+++|.+++...+..+..+.+.|+++.|+.+
T Consensus 77 A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 77 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp HHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence 999999999777899999999999999999998765 999999999999998777778888889999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCcchHHHHHHcCChH
Q 004992 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (720)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~ 294 (720)
++++++.++..++.+|.+++.++++++..+.+.|+++.|+.++++.+ ..++..++.+|.|++. .+..+..+++.|+++
T Consensus 149 L~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~ 227 (644)
T 2z6h_A 149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ 227 (644)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHH
T ss_pred HCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHH
Confidence 99999999999999999999878999999999999999999998865 5778899999999985 467788999999999
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhh
Q 004992 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIA 374 (720)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~ 374 (720)
.|+.++.+.+..++..++++|.|++...+.. ....++++.|+.++.+.++.+++.|+++|++|+. +.+.++..+.
T Consensus 228 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~--~~~~~~~~v~ 302 (644)
T 2z6h_A 228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC--NNYKNKMMVC 302 (644)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 9999999999999999999999998654322 1224789999999999999999999999999998 3456788889
Q ss_pred hcCCHHHHHHHhcCC--ChhHHHHHHHHHHhcccCCC----chhHHHhhcccccccchhhhhh--hhHHHHHHHHHHH--
Q 004992 375 HNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNED----NVADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKRL-- 444 (720)
Q Consensus 375 ~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~----~~~~l~~~~~v~~L~~~~~~~~--~~~~~~~~~~~~l-- 444 (720)
+.|+++.|++++.+. .+.++..++++|.+|+.... .+..+...|+++.|.+...... .....+...+.++
T Consensus 303 ~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 303 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 999999999999653 37999999999999986432 2344777888888776443221 2222233333333
Q ss_pred -----HHhhhhhhHHHHHHHHHhcc----------------------hhHHHHHHHHHHhhcCCcccchhhhccCcHHHH
Q 004992 445 -----EEKIHGRVLNHLLYLMRVAE----------------------KGVQRRVALALAHLCSPDDQRTIFIDGGGLELL 497 (720)
Q Consensus 445 -----~~~~~~~~~~~L~~ll~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L 497 (720)
......++++.|+.++.+++ .+++..++.+|.+|+.+..++..+.+.|+++.|
T Consensus 383 ~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~L 462 (644)
T 2z6h_A 383 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462 (644)
T ss_dssp SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHH
Confidence 23457789999999998854 356678888999999888888888899999999
Q ss_pred HHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 498 LGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 498 ~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+.++.+++++++..|+.+|.+++.+.
T Consensus 463 v~lL~~~~~~v~~~a~~aL~~l~~~~ 488 (644)
T 2z6h_A 463 VQLLYSPIENIQRVAAGVLCELAQDK 488 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCH
Confidence 99999999999999999999998653
No 18
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=294.37 Aligned_cols=368 Identities=20% Similarity=0.216 Sum_probs=294.1
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCc----cchhhhH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN----CSRAVNS 180 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~----~~~~~~~ 180 (720)
.++.|+..+.+.+. . ...+.|..+..+++.|..+.+.|++|.|+++|+....+. ......+
T Consensus 33 ~~~~l~~~~~~~~~------------~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~ 97 (458)
T 3nmz_A 33 MVYSLLSMLGTHDK------------D---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE 97 (458)
T ss_dssp ------------CC------------H---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHH
T ss_pred HHHHHHHHhcCCCH------------H---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHH
Confidence 45666677765554 3 377889999988899999999999999999999754310 0001129
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCCc----------HHHHHhhcCCC--HH-----HHH-------HHHHHHHHhcc
Q 004992 181 VIRRAADAITNLAHENSSIKTRVRMEGGI----------PPLVELLEFTD--TK-----VQR-------AAAGALRTLAF 236 (720)
Q Consensus 181 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i----------~~L~~ll~~~~--~~-----v~~-------~a~~~L~~L~~ 236 (720)
++..|+|+|.|++.+.++......+.+.+ +.+++++.+.. .+ ++. .|.++|.|++.
T Consensus 98 ~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~ 177 (458)
T 3nmz_A 98 ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 177 (458)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC
Confidence 99999999999999888777776666766 55666665542 11 444 89999999986
Q ss_pred CChhcHHHHHhCCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCCcchHHHHHH-cCChHHHHHhhccCC
Q 004992 237 KNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCC 304 (720)
Q Consensus 237 ~~~~~~~~i~~~g~l~~L~~ll~~-----------~~~~v~~~a~~~L~nL~~~~~~~~~~~~~-~~~l~~L~~ll~~~~ 304 (720)
++++|+.+.+.|+++.|+.++.. .++.++..|+|+|.||+.+++..+..+.. .|.++.|+.+|.+++
T Consensus 178 -~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 178 -DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC
Confidence 69999999999999999999952 24678999999999999887766666654 455999999999999
Q ss_pred hHHHHHHHHHHHHHhcc-CcchhhHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHHHhhhhcCcchhhhhh-hcCCHHH
Q 004992 305 SESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVITDMHNQAGIA-HNGGLVP 381 (720)
Q Consensus 305 ~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~-~~~~i~~ 381 (720)
++++..++|+|.|++.. ++.++..+.+.|++|.|+.+| .+.++.+++.|+.+|+||+. ..++++..+. ..|+++.
T Consensus 257 ~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~--~~~~nk~~I~~~~Gal~~ 334 (458)
T 3nmz_A 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA--HCTENKADICAVDGALAF 334 (458)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH--HCHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHhcCcHHH
Confidence 99999999999999874 457888899999999999975 55789999999999999998 2446777777 7899999
Q ss_pred HHHHhcCCCh----hHHHHHHHHHHhccc----CCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhH
Q 004992 382 LLKLLDSKNG----SLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 453 (720)
Q Consensus 382 l~~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 453 (720)
|++++.+.+. .++..++++|+||+. +++++..+.+.| .+
T Consensus 335 Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G---------------------------------~i 381 (458)
T 3nmz_A 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---------------------------------CL 381 (458)
T ss_dssp HHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---------------------------------HH
T ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc---------------------------------cH
Confidence 9999977654 489999999999984 666666666655 56
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHhhcC-CcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 454 NHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 454 ~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+.|+.++++++..++..|+++|.|++. +.+++..+.+.|+++.|+.++.++++.+++.|+++|.+|+.+.
T Consensus 382 ~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 382 QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 678899999999999999999999984 5668888999999999999999999999999999999999764
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=7.3e-33 Score=295.98 Aligned_cols=361 Identities=19% Similarity=0.265 Sum_probs=302.8
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (720)
.+|.|+.+|++++. +++..|+++|.+++ .++..+..+.+.|+++.|+.+|++++. +++.
T Consensus 3 ~l~~lv~~L~s~~~------------~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~--------~~~~ 62 (457)
T 1xm9_A 3 TIPKAVQYLSSQDE------------KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--------NVQQ 62 (457)
T ss_dssp CHHHHHHHHHSSCT------------HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--------HHHH
T ss_pred CHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH--------HHHH
Confidence 58999999999877 89999999999999 777888899999999999999997655 8999
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhh----
Q 004992 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---- 258 (720)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll---- 258 (720)
.|+++|.|++..+++++..+.+.|++|.|+++|. ++++++++.++++|+||+.+ +.++..+.+ |++|.|+.++
T Consensus 63 ~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~ 140 (457)
T 1xm9_A 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPF 140 (457)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccc
Confidence 9999999999977899999999999999999999 88999999999999999985 788988999 9999999999
Q ss_pred ----cC--------CCHHHHHHHHHHHHHhhcCCcchHHHHHHc-CChHHHHHhhcc------CChHHHHHHHHHHHHHh
Q 004992 259 ----RS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAALLLGQFA 319 (720)
Q Consensus 259 ----~~--------~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~ 319 (720)
.+ .++.+...|+|+|.||+.. +..++.+.+. |+++.|+.++.+ .+..+...++++|.|++
T Consensus 141 s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred cccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 33 2456777999999999977 7788888887 999999999985 35667888999999986
Q ss_pred cc--------------------------------------------------CcchhhHHHhcCChHHHHHHhcC-CCHH
Q 004992 320 AT--------------------------------------------------DSDCKVHIVQRGAVRPLIEMLQS-PDVQ 348 (720)
Q Consensus 320 ~~--------------------------------------------------~~~~~~~~~~~~~~~~L~~ll~~-~~~~ 348 (720)
.. .+.....+.+.|+++.|+.+|.+ .++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 220 YRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp TTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred cchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 21 01122345566788999999965 5799
Q ss_pred HHHHHHHHHHHHhhhhcCcch-----hhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccc
Q 004992 349 LREMSAFALGRLAQVITDMHN-----QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 423 (720)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~~~-----~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L 423 (720)
+++.|+++|.|++. +.... +..+.+.|+++.|++++.+++..++..|+++|.|++.+++.... +.
T Consensus 300 ~~e~a~~aL~nl~~--~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~-i~------- 369 (457)
T 1xm9_A 300 TLEACAGALQNLTA--SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV-MG------- 369 (457)
T ss_dssp HHHHHHHHHHHHTT--CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHH-HH-------
T ss_pred HHHHHHHHHHHhcc--CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHH-HH-------
Confidence 99999999999998 22221 23345689999999999999999999999999999987654322 22
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcc------hhHHHHHHHHHHhhcCC-cccchhhhccCcHHH
Q 004992 424 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE------KGVQRRVALALAHLCSP-DDQRTIFIDGGGLEL 496 (720)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~------~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~ 496 (720)
.+.++.|+.++..++ +++...++.+|.++... .+....+.+.|+++.
T Consensus 370 --------------------------~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~ 423 (457)
T 1xm9_A 370 --------------------------NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN 423 (457)
T ss_dssp --------------------------HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHH
T ss_pred --------------------------HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence 246778888888764 36888999999999654 447778889999999
Q ss_pred HHHhhcCC-CchhhhhHHHHHHHHHhhcc
Q 004992 497 LLGLLGST-NPKQQLDGAVALFKLANKAT 524 (720)
Q Consensus 497 L~~ll~~~-~~~v~~~a~~aL~~L~~~~~ 524 (720)
|+.++.++ +++++..|++.|.++..+.+
T Consensus 424 L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 424 IINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999 89999999999999887653
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=8.4e-32 Score=306.36 Aligned_cols=436 Identities=20% Similarity=0.239 Sum_probs=362.5
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhC-CChHHHHHhhcCC-CCcccccCCCcchHHHH
Q 004992 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVE 133 (720)
Q Consensus 56 ~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~-~~~~~~~~~~~~~~~v~ 133 (720)
.+.++.++..|.+. ++.+|..|+.+|.+++.+...+..+... |+++.|+.+|.+. +. +++
T Consensus 149 ~g~ip~Lv~lL~~~------d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~------------~vr 210 (780)
T 2z6g_A 149 TRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------------ETA 210 (780)
T ss_dssp HHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCH------------HHH
T ss_pred hCCHHHHHHHHCCC------CHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCH------------HHH
Confidence 55677777776633 6779999999999999987777777754 8999999999754 44 899
Q ss_pred HHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHH
Q 004992 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (720)
Q Consensus 134 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (720)
..|+++|.+|+..++.+..+...|+++.|+.+|++.+. .++..|+++|.+++...+..+..+.+.|+++.|+
T Consensus 211 ~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~--------~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv 282 (780)
T 2z6g_A 211 RCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD--------SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMV 282 (780)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHH
Confidence 99999999999777888899999999999999998765 9999999999999998788888888899999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCCcchHHHHHHcCC
Q 004992 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (720)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~-~v~~~a~~~L~nL~~~~~~~~~~~~~~~~ 292 (720)
.++.+++..++..++.+|.+++.++++++..+.+.|+++.|+.++++.++ ..+..++.+|.+|+.. +..+..+++.|+
T Consensus 283 ~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~ 361 (780)
T 2z6g_A 283 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGG 361 (780)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhch
Confidence 99999999999999999999998789999999999999999999998765 4566789999999864 667788899999
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhh
Q 004992 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAG 372 (720)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 372 (720)
++.|+.++.+.+..++..++++|.+++...... ....++++.|+.++.+.++.++..|+++|++|+. +.+.++..
T Consensus 362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~--~~~~~~~~ 436 (780)
T 2z6g_A 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC--NNYKNKMM 436 (780)
T ss_dssp HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CCHHHHHH
Confidence 999999999999999999999999999654332 1224689999999999999999999999999998 34567788
Q ss_pred hhhcCCHHHHHHHhcC-CC-hhHHHHHHHHHHhcccCCCc----hhHHHhhcccccccchhhhhh--hhHHHHHHHHHHH
Q 004992 373 IAHNGGLVPLLKLLDS-KN-GSLQHNAAFALYGLADNEDN----VADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKRL 444 (720)
Q Consensus 373 l~~~~~i~~l~~ll~~-~~-~~v~~~a~~~L~~l~~~~~~----~~~l~~~~~v~~L~~~~~~~~--~~~~~~~~~~~~l 444 (720)
+.+.|+++.|++++.+ .+ ..++..++++|++|+..... +..+...++++.|.+...... .....+...+.++
T Consensus 437 i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nL 516 (780)
T 2z6g_A 437 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516 (780)
T ss_dssp HHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 8899999999999965 33 48999999999999864332 346778888888776433221 2222222233333
Q ss_pred -------HHhhhhhhHHHHHHHHHhcc----------------------hhHHHHHHHHHHhhcCCcccchhhhccCcHH
Q 004992 445 -------EEKIHGRVLNHLLYLMRVAE----------------------KGVQRRVALALAHLCSPDDQRTIFIDGGGLE 495 (720)
Q Consensus 445 -------~~~~~~~~~~~L~~ll~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 495 (720)
......++++.|+.++.+++ ++++..++.+|++|+.+..++..+.+.|+++
T Consensus 517 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~ 596 (780)
T 2z6g_A 517 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP 596 (780)
T ss_dssp HSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHH
T ss_pred hcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHH
Confidence 23446789999999998765 3467788999999998888888888999999
Q ss_pred HHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 496 LLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 496 ~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.|+.++.+++++++..|+.+|.+|+.+.
T Consensus 597 ~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 624 (780)
T 2z6g_A 597 LFVQLLYSPIENIQRVAAGVLCELAQDK 624 (780)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999998653
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.7e-32 Score=296.17 Aligned_cols=365 Identities=19% Similarity=0.252 Sum_probs=319.9
Q ss_pred CChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cCh-hhHHHHHHcCChHHHHHHHhccCCCccchhhhHH
Q 004992 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (720)
Q Consensus 104 g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v 181 (720)
..++.|+..|.+++. .++..|+++|.+++ ..+ .....++..|+++.|+.+|.+.++. ++
T Consensus 74 ~~l~~lv~~L~s~~~------------~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~-------~v 134 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDN------------NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFP-------QL 134 (528)
T ss_dssp -CHHHHHHHHTSSCH------------HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCH-------HH
T ss_pred HHHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCH-------HH
Confidence 368999999987766 89999999999997 333 5677888999999999999887532 99
Q ss_pred HHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhh-cC
Q 004992 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RS 260 (720)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll-~~ 260 (720)
+..|+++|.+++..++..+..+...|+++.|+.++.++++.++..|+++|++++.+.+..+..+.+.|+++.|+.++ .+
T Consensus 135 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~ 214 (528)
T 4b8j_A 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH 214 (528)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC
Confidence 99999999999998888888999999999999999999999999999999999987788899999999999999999 66
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHH
Q 004992 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (720)
Q Consensus 261 ~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 340 (720)
.++.++..++++|.+|+...+.. ......++++.|+.++.+.++.++..++++|.+++.+.+.....+.+.|+++.|+.
T Consensus 215 ~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~ 293 (528)
T 4b8j_A 215 TKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293 (528)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHH
Confidence 78999999999999999775443 33456899999999999999999999999999999766666677888999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCC-ChhHHHHHHHHHHhcccCC-CchhHHHhhc
Q 004992 341 MLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNE-DNVADFIRVG 418 (720)
Q Consensus 341 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~ 418 (720)
+|.++++.++..|+++|++++. +.+.....+.+.|+++.|+.++.++ ++.++..|+++|.||+... +....++
T Consensus 294 lL~~~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~--- 368 (528)
T 4b8j_A 294 LLLHPSPSVLIPALRTVGNIVT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI--- 368 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHH---
T ss_pred HHcCCChhHHHHHHHHHHHHHc--CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHH---
Confidence 9999999999999999999998 3455666788899999999999988 9999999999999998643 2222333
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCC--cccchhhhccCcHHH
Q 004992 419 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLEL 496 (720)
Q Consensus 419 ~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~ 496 (720)
..++++.|+.++.++++.++..|+++|.+++.. ++....+.+.|+++.
T Consensus 369 ------------------------------~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 369 ------------------------------NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp ------------------------------HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred ------------------------------HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 345788899999999999999999999999876 446667788999999
Q ss_pred HHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 497 LLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 497 L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
|+.++.+++++++..+..+|.+|....
T Consensus 419 L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 419 LCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998754
No 22
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4e-32 Score=290.31 Aligned_cols=362 Identities=17% Similarity=0.227 Sum_probs=296.8
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~ 137 (720)
++.++..|.+. ++.++..|+++|.+++.+ +..+..+++.|++|.|+.+|++++. .++..|+
T Consensus 4 l~~lv~~L~s~------~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~------------~~~~~A~ 65 (457)
T 1xm9_A 4 IPKAVQYLSSQ------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ------------NVQQAAA 65 (457)
T ss_dssp HHHHHHHHHSS------CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHH
T ss_pred HHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 67788888775 556899999999999985 6677789999999999999998766 8999999
Q ss_pred HHHHHhc-cChhhHHHHHHcCChHHHHHHHh-ccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHh
Q 004992 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLK-RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (720)
Q Consensus 138 ~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (720)
++|.||+ .+++++..+.+.|+++.|+.+|. +.+. ++++.++|+|.|++.. +.++..+.+ |++|.|+.+
T Consensus 66 ~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--------~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~l 135 (457)
T 1xm9_A 66 GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--------EIQKQLTGLLWNLSST-DELKEELIA-DALPVLADR 135 (457)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--------HHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHH
Confidence 9999999 66999999999999999999998 4444 9999999999999986 778888888 999999999
Q ss_pred h--------cC--------CCHHHHHHHHHHHHHhccCChhcHHHHHhC-CCHHHHHHhhcC------CCHHHHHHHHHH
Q 004992 216 L--------EF--------TDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEAVGV 272 (720)
Q Consensus 216 l--------~~--------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~-g~l~~L~~ll~~------~~~~v~~~a~~~ 272 (720)
+ .+ .++.+...|+++|+||+.+ ++++..+.+. |+++.|+.++.+ .+..+...++.+
T Consensus 136 l~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~ 214 (457)
T 1xm9_A 136 VIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214 (457)
T ss_dssp TTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHH
T ss_pred HhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHH
Confidence 9 22 2467778999999999985 8899999987 999999999985 455678888999
Q ss_pred HHHhhcCC--------------------------------------------------cchHHHHHHcCChHHHHHhhcc
Q 004992 273 IGNLVHSS--------------------------------------------------PNIKKEVLAAGALQPVIGLLSS 302 (720)
Q Consensus 273 L~nL~~~~--------------------------------------------------~~~~~~~~~~~~l~~L~~ll~~ 302 (720)
|.|++... +...+.+.+.|+++.++.+|.+
T Consensus 215 L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~ 294 (457)
T 1xm9_A 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK 294 (457)
T ss_dssp HHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH
T ss_pred HHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh
Confidence 99986210 1111223345678889999976
Q ss_pred C-ChHHHHHHHHHHHHHhccCcch-----hhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhc
Q 004992 303 C-CSESQREAALLLGQFAATDSDC-----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHN 376 (720)
Q Consensus 303 ~-~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~ 376 (720)
+ ++.+++.|+|+|.|++.++... +..+.+.|++|.|+++|.+++.++++.|+++|.|++. +.+++..+. .
T Consensus 295 ~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~---~~~~~~~i~-~ 370 (457)
T 1xm9_A 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR---HPLLHRVMG-N 370 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT---SGGGHHHHH-H
T ss_pred cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc---CHHHHHHHH-H
Confidence 5 5899999999999999765442 1233468999999999999999999999999999998 777665554 5
Q ss_pred CCHHHHHHHhcCCCh------hHHHHHHHHHHhccc-CCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhh
Q 004992 377 GGLVPLLKLLDSKNG------SLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 449 (720)
Q Consensus 377 ~~i~~l~~ll~~~~~------~v~~~a~~~L~~l~~-~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (720)
++++.|+++|.+.++ ++...++++|.++.. +++....+.+
T Consensus 371 ~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~--------------------------------- 417 (457)
T 1xm9_A 371 QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS--------------------------------- 417 (457)
T ss_dssp HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCC---------------------------------
T ss_pred hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH---------------------------------
Confidence 799999999977643 688899999999965 4444444444
Q ss_pred hhhHHHHHHHHHhc-chhHHHHHHHHHHhhcCCcccch
Q 004992 450 GRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRT 486 (720)
Q Consensus 450 ~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 486 (720)
.+.+++|+.++.++ ++.++..|+++|.++..+.+.+.
T Consensus 418 ~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 418 SSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred cCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 44677888999999 99999999999999998877553
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.9e-31 Score=292.92 Aligned_cols=367 Identities=17% Similarity=0.244 Sum_probs=318.6
Q ss_pred CCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-c-ChhhHHHHHHcCChHHHHHHHhccCCCccchhhhH
Q 004992 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (720)
Q Consensus 103 ~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~ 180 (720)
.+.++.|+..|.+.+. .++..|+++|.++. . .......++..|+++.|+.+|.+..+. +
T Consensus 86 ~~~i~~lv~~L~s~~~------------~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~-------~ 146 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDM------------QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE-------M 146 (530)
T ss_dssp -CCHHHHHHHHSCSSH------------HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCH-------H
T ss_pred HHHHHHHHHHHcCCCH------------HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCH-------H
Confidence 4679999999988766 89999999999997 2 244556778899999999999886332 8
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC
Q 004992 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (720)
Q Consensus 181 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~ 260 (720)
++..|+++|.+++...+..+..+...|+++.|+.++.++++.++..|+++|++++.+.+..+..+...|+++.|+.++.+
T Consensus 147 v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 226 (530)
T 1wa5_B 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 226 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc
Confidence 99999999999999777888888889999999999999999999999999999998778889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHH
Q 004992 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (720)
Q Consensus 261 ~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 340 (720)
.++.++..++++|++|+.............++++.|+.++.+.++.++..++++|.+++...+.....+.+.|+++.|+.
T Consensus 227 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~ 306 (530)
T 1wa5_B 227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE 306 (530)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH
Confidence 99999999999999999765233345566899999999999999999999999999999876677777888999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC-CCchhHHHhhcc
Q 004992 341 MLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGG 419 (720)
Q Consensus 341 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~ 419 (720)
++.+.++.++..|+++|++++. +.+.....+.+.|+++.|+.++.++++.++..|+++|.+++.. ++....+++
T Consensus 307 lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--- 381 (530)
T 1wa5_B 307 LLSHESTLVQTPALRAVGNIVT--GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID--- 381 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH---
T ss_pred HHCCCChhhHHHHHHHHHHHHc--CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---
Confidence 9999999999999999999998 3445556677889999999999999999999999999999864 223223333
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCC--c--ccchhhhccCcHH
Q 004992 420 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--D--DQRTIFIDGGGLE 495 (720)
Q Consensus 420 v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~--~~~~~~~~~~~~~ 495 (720)
.++++.|+.++.++++.++..|+++|++++.. . +....+.+.|+++
T Consensus 382 ------------------------------~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~ 431 (530)
T 1wa5_B 382 ------------------------------ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431 (530)
T ss_dssp ------------------------------TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHH
T ss_pred ------------------------------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHH
Confidence 45777889999999999999999999999764 2 4555677899999
Q ss_pred HHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 496 LLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 496 ~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.|+.++.++++.++..|+.+|.++....
T Consensus 432 ~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 432 PLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999764
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=8e-31 Score=282.58 Aligned_cols=379 Identities=19% Similarity=0.238 Sum_probs=317.0
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~ 135 (720)
+.++.+++.|.+. .++.++..|+++|.+++.+ ++....+++.|+++.|+.+|++++. .+|+.
T Consensus 64 ~~i~~L~~~L~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~vr~~ 126 (450)
T 2jdq_A 64 GVVARFVEFLKRK-----ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE------------DVQEQ 126 (450)
T ss_dssp THHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHH
T ss_pred CcHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH------------HHHHH
Confidence 4677777777653 3566899999999999984 7777788899999999999998766 99999
Q ss_pred HHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcC-chhhHHHHhcCCcHHHH
Q 004992 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLV 213 (720)
Q Consensus 136 a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~ 213 (720)
|+++|++++ .+++.+..+...|+++.++.++.++.+. +++..++++|.+++... +.....+ ..++++.|+
T Consensus 127 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~ 198 (450)
T 2jdq_A 127 AVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL-------TMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLS 198 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCH-------HHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCH-------HHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHH
Confidence 999999999 6788999999999999999999863332 99999999999999754 3333323 378999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCCh
Q 004992 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (720)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l 293 (720)
.++.++++.++..++++|.+++...++....+...|+++.|+.++.++++.++..++++|++++...+...+.+.+.|++
T Consensus 199 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 278 (450)
T 2jdq_A 199 WLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278 (450)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccH
Confidence 99999999999999999999998777778888889999999999999999999999999999998877777778889999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhh
Q 004992 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGI 373 (720)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l 373 (720)
+.|+.++.++++.++..++++|.+++.+++.....+.+.|+++.|+.++.++++.++..|+++|++++... .++....+
T Consensus 279 ~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~l 357 (450)
T 2jdq_A 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGG-SAEQIKYL 357 (450)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC-CHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC-CHHHHHHH
Confidence 99999999999999999999999999877777777888999999999999999999999999999999821 34555667
Q ss_pred hhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhH
Q 004992 374 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 453 (720)
Q Consensus 374 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 453 (720)
.+.|+++.|++++.++++.++..++++|.+++...+..... ..+.+.. ....+...+.+
T Consensus 358 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~--------------------~~~~l~~~g~~ 416 (450)
T 2jdq_A 358 VELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINP--------------------YCALIEEAYGL 416 (450)
T ss_dssp HHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCH--------------------HHHHHHHHHCH
T ss_pred HHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhH--------------------HHHHHHHcCcH
Confidence 78899999999999999999999999999998643321110 0011111 01122344677
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHhhcCCc
Q 004992 454 NHLLYLMRVAEKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 454 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 482 (720)
+.|..+..++++.++..|..+|.++....
T Consensus 417 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 417 DKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 88888999999999999999999986544
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.6e-29 Score=257.05 Aligned_cols=283 Identities=20% Similarity=0.261 Sum_probs=242.4
Q ss_pred CCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCC---CccchhhhHHHHHHHHHHHHhhhcCchhhH
Q 004992 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD---SNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (720)
Q Consensus 125 ~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 201 (720)
+.|.++ .+.+|+++|.|++.++++|+.+.+.|+++.|+.+|..... ........++++.|+|+|.|++..++.++.
T Consensus 42 ~~~~~~-~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 42 PAPVEH-QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp CCGGGG-THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCcchH-HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344444 4458999999999779999999999999999999964210 000001228999999999999987777777
Q ss_pred HHHhc-CCcHHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhcHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhc
Q 004992 202 RVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 202 ~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~L~~l-l~~~~~~v~~~a~~~L~nL~~ 278 (720)
.+... |.+|.|+.+|++++++++..|+++|++|+.+ ++.++..+.+.|++|.|+.+ +++.++++++.++.+|+||+.
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 77544 5599999999999999999999999999974 57889999999999999997 566789999999999999998
Q ss_pred CCcchHHHHH-HcCChHHHHHhhccCCh----HHHHHHHHHHHHHhc---cCcchhhHHHhcCChHHHHHHhcCCCHHHH
Q 004992 279 SSPNIKKEVL-AAGALQPVIGLLSSCCS----ESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 350 (720)
Q Consensus 279 ~~~~~~~~~~-~~~~l~~L~~ll~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~ 350 (720)
.++..+..+. ..|+++.|+.++.+++. ++++.++++|.|++. .+++++..+.+.|+++.|+.+|++++..++
T Consensus 201 ~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 280 (354)
T 3nmw_A 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 280 (354)
T ss_dssp TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHH
T ss_pred cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHH
Confidence 6666677777 78999999999987654 589999999999986 577888889999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCc
Q 004992 351 EMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 410 (720)
Q Consensus 351 ~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (720)
+.|+++|+|++. ++++++..+.+.|+++.|++++.+++..+++.|+++|.||+.+.+.
T Consensus 281 ~~A~~aL~nLa~--~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 281 SNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHHTS--SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999996 3677888999999999999999999999999999999999876444
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=3.3e-29 Score=254.83 Aligned_cols=276 Identities=22% Similarity=0.217 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHc
Q 004992 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (720)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~ 156 (720)
..+..|+++|.+++.++++|..+++.|+++.|+.+|...... ........++.++..|+++|.||+ .+++.+..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~-~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEM-YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhccccc-ccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 356789999999999999999999999999999999632100 000001123589999999999999 666687777655
Q ss_pred -CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhc-CchhhHHHHhcCCcHHHHHh-hcCCCHHHHHHHHHHHHH
Q 004992 157 -GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRT 233 (720)
Q Consensus 157 -~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~ 233 (720)
|+++.|+.+|++.+. +++..|+++|.||+.. ++.++..+.+.|+++.|+++ +++++..+++.++.+|++
T Consensus 126 ~GaIp~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 126 KGCMRALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHHHGGGCSCH--------HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCCH--------HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 559999999997665 9999999999999984 56788899999999999997 467789999999999999
Q ss_pred hccCChhcHHHHH-hCCCHHHHHHhhcCCCH----HHHHHHHHHHHHhhc---CCcchHHHHHHcCChHHHHHhhccCCh
Q 004992 234 LAFKNDENKNQIV-ECNALPTLILMLRSEDS----AIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCS 305 (720)
Q Consensus 234 L~~~~~~~~~~i~-~~g~l~~L~~ll~~~~~----~v~~~a~~~L~nL~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~ 305 (720)
|+..+++++..+. ..|++|.|+.+|.++++ ++++.++++|.||+. .+++.++.+.+.|+++.|+.+|.+++.
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 9976778888887 78999999999987654 599999999999986 578888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
.+++.|+++|.|++.++++.+..+.+.|++|.|+.++.+.+..+++.|+++|.||+.
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 999999999999997788889999999999999999999999999999999999998
No 27
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.95 E-value=7.1e-28 Score=236.12 Aligned_cols=161 Identities=21% Similarity=0.346 Sum_probs=142.6
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcC--CCCCCceecCCCCHHHHHHHHHHHhcCCcccChh
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 621 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~ 621 (720)
+.++.++.++||++.++|+.|+|||.||+++|+||++||.+++. |+....|.++++++++|+.+++|+|||.+.++.+
T Consensus 23 ~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~ 102 (256)
T 3hve_A 23 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED 102 (256)
T ss_dssp HTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-C
T ss_pred HHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHh
Confidence 56889999999999999999999999999999999999999887 6777899999999999999999999999999999
Q ss_pred hHHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhhhcHHH
Q 004992 622 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 701 (720)
Q Consensus 622 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~ 701 (720)
++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|++..|.+.|.+||.+||.++..+++|.+|+.+.+.+
T Consensus 103 ~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~ 182 (256)
T 3hve_A 103 TIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKE 182 (256)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997766555
Q ss_pred HHH
Q 004992 702 IHN 704 (720)
Q Consensus 702 l~~ 704 (720)
+++
T Consensus 183 lL~ 185 (256)
T 3hve_A 183 VIS 185 (256)
T ss_dssp HHH
T ss_pred HHc
Confidence 543
No 28
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=218.95 Aligned_cols=147 Identities=34% Similarity=0.522 Sum_probs=136.5
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhH
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 623 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 623 (720)
..++.++.++|+++.++|+.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+++|+|||.+.++.+++
T Consensus 26 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~ 105 (172)
T 3htm_A 26 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 105 (172)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred HHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChh
Q 004992 624 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 690 (720)
Q Consensus 624 ~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~ 690 (720)
.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|++..|.+.|.+||.+||.++.++++
T Consensus 106 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~ 172 (172)
T 3htm_A 106 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988763
No 29
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.95 E-value=1.9e-27 Score=236.13 Aligned_cols=159 Identities=23% Similarity=0.408 Sum_probs=143.1
Q ss_pred hhhhcCCCcceEEEEEC---CeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecC------CCCHHHHHHHHHHHhcC
Q 004992 544 DQFVNNATLSDVTFLVE---GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP------NIRWEVFELMMRFIYTG 614 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~---~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~------~~~~~~~~~~l~~~Yt~ 614 (720)
+.++.++.++||++.++ |+.|+|||.||+++|+||++||.++|+|+.+..|.++ ++++++|+.+++|+|||
T Consensus 24 ~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg 103 (279)
T 3i3n_A 24 NEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 103 (279)
T ss_dssp HHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcC
Confidence 56889999999999998 8999999999999999999999999999999999998 89999999999999999
Q ss_pred CcccChhhHHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhh
Q 004992 615 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNL 694 (720)
Q Consensus 615 ~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l 694 (720)
.+.++.+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|++..|.+.|.+||.+||.++..+++|.+|
T Consensus 104 ~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L 183 (279)
T 3i3n_A 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTL 183 (279)
T ss_dssp EEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGS
T ss_pred CcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHH
Q 004992 695 IQRIIPEI 702 (720)
Q Consensus 695 ~~~~~~~l 702 (720)
+.+.+.++
T Consensus 184 ~~~~l~~l 191 (279)
T 3i3n_A 184 PFHLIRDW 191 (279)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 66544433
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=4.2e-25 Score=217.64 Aligned_cols=239 Identities=31% Similarity=0.396 Sum_probs=225.4
Q ss_pred CChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 104 g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
|.++.|+.+|++++. +++..|+++|.+++ ..++.+..+.+.|+++.|+.+|++.+. +++
T Consensus 2 ~~i~~L~~~L~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--------~v~ 61 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS------------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--------EVQ 61 (252)
T ss_dssp CHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHH
T ss_pred CcHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--------HHH
Confidence 578999999998776 89999999999999 677799999999999999999998765 999
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCC
Q 004992 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (720)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~ 262 (720)
..++++|.+++..++..+..+.+.|+++.|+.+++++++.++..++++|.+++..++..+..+.+.|+++.|+.++.+++
T Consensus 62 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~ 141 (252)
T 4hxt_A 62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 141 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 99999999999977889999999999999999999999999999999999999778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHh
Q 004992 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (720)
Q Consensus 263 ~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 342 (720)
+.++..++++|+|++..++.....+.+.|+++.|+.++.++++.++..++++|.+++..++.....+.+.|+++.|+.++
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999988888888899999999999999999999999999999999987778888899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhh
Q 004992 343 QSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~ 362 (720)
.++++.+++.|+++|.+++.
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHc
Confidence 99999999999999999998
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=8.3e-25 Score=215.54 Aligned_cols=243 Identities=30% Similarity=0.390 Sum_probs=226.0
Q ss_pred CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004992 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (720)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (720)
|.++.|+.+|.+++. +++..|+++|.+++...+..+..+.+.|+++.|+.+++++++.++..++++|.+++.
T Consensus 2 ~~i~~L~~~L~~~~~--------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS--------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp CHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 568999999998775 999999999999998787788889999999999999999999999999999999998
Q ss_pred CChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHH
Q 004992 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (720)
Q Consensus 237 ~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (720)
+++..+..+.+.|+++.|+.+++++++.++..++++|.+++..++..+..+.+.|+++.|+.++.++++.++..++++|.
T Consensus 74 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 74 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred HHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHH
Q 004992 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 396 (720)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~ 396 (720)
+++..++.....+.+.|+++.|+.++.++++.++..|+++|.+++. +.+.....+.+.|+++.+++++.++++.++..
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 231 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKE 231 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHH
Confidence 9998777777888899999999999999999999999999999998 35566778889999999999999999999999
Q ss_pred HHHHHHhcccCCC
Q 004992 397 AAFALYGLADNED 409 (720)
Q Consensus 397 a~~~L~~l~~~~~ 409 (720)
|+++|.||+....
T Consensus 232 a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 232 AQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHTCB
T ss_pred HHHHHHHHHcCCC
Confidence 9999999987544
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=2.1e-24 Score=212.53 Aligned_cols=240 Identities=24% Similarity=0.339 Sum_probs=219.9
Q ss_pred CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004992 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (720)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (720)
...+.++..|.+++. +++..|+++|.++....+..+..+.+.|+++.|+.+++++++.++..++++|.+++.
T Consensus 12 ~~~~~~~~~L~s~~~--------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp CSHHHHHHHHHSSCS--------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 457889999998877 999999999988776566777788999999999999999999999999999999998
Q ss_pred CChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHH
Q 004992 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (720)
Q Consensus 237 ~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (720)
++++++..+.+.|+++.|+.+++++++.++..++++|+|++...+.....+.+.|+++.|+.++.++++.++..++++|.
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999998776655488899999999999999999999999999999
Q ss_pred HHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHH
Q 004992 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 396 (720)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~ 396 (720)
+++..++.....+.+.|+++.|+.++.++++.++..|+++|++++. +.+..+..+.+.|+++.+++++.+.++.++..
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~ 241 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHT
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHH
Confidence 9998777778888899999999999999999999999999999997 35667778889999999999999999999999
Q ss_pred HHHHHHhccc
Q 004992 397 AAFALYGLAD 406 (720)
Q Consensus 397 a~~~L~~l~~ 406 (720)
|+++|.+|+.
T Consensus 242 A~~~L~~l~~ 251 (252)
T 4db8_A 242 AQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTC-
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=2.8e-24 Score=211.67 Aligned_cols=239 Identities=24% Similarity=0.351 Sum_probs=219.9
Q ss_pred CChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 104 g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
...+.+..+|.+++. +++..|+++|.++. .+++.+..+.+.|+++.|+.+|++.+. +++
T Consensus 12 ~~~~~~~~~L~s~~~------------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~ 71 (252)
T 4db8_A 12 SELPQMTQQLNSDDM------------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--------QIL 71 (252)
T ss_dssp CSHHHHHHHHHSSCS------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--------HHH
T ss_pred chHHHHHHHHcCCCH------------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--------HHH
Confidence 467889999999888 89999999998876 667788889999999999999998765 999
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCC
Q 004992 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (720)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~ 262 (720)
..|+++|.+++..++..+..+.+.|+++.|+.+++++++.++..++++|++++.+.+.....+.+.|+++.|+.++.+++
T Consensus 72 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 151 (252)
T 4db8_A 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC
Confidence 99999999999988889999999999999999999999999999999999999854444488889999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHh
Q 004992 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (720)
Q Consensus 263 ~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 342 (720)
+.++..++++|+|++..++.....+.+.|+++.|+.++.++++.++..++++|.+++..++.....+.+.|+++.|+.++
T Consensus 152 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 152 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence 99999999999999988888888889999999999999999999999999999999987778888899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhh
Q 004992 343 QSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~ 362 (720)
.+.++.+++.|+++|.+++.
T Consensus 232 ~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 232 SHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp TCSSSHHHHTHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999875
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.8e-24 Score=229.63 Aligned_cols=389 Identities=16% Similarity=0.139 Sum_probs=296.7
Q ss_pred hHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhH-HHHH
Q 004992 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIV 154 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~ 154 (720)
+..+...+++.|...|.++..|..+. .+.++.|.+++++ . .+|..|+-+|.++...+... ..+
T Consensus 269 ~~~~~~a~L~lLsaACi~~~cR~~I~-~~~~~~L~~~l~~--~------------~ir~lAavvL~KL~~~~~~~~~si- 332 (778)
T 3opb_A 269 DLQFTKELLRLLSSACIDETMRTYIT-ENYLQLLERSLNV--E------------DVQIYSALVLVKTWSFTKLTCINL- 332 (778)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHH-HHHHHHHHHHTTS--G------------GGHHHHHHHHHHHTGGGTCTTCCH-
T ss_pred chHHHHHHHHHHHHHhCCcHHHHHHH-HhHHHHHHHHhcc--H------------HHHHHHHHHHHHHhcCCCCCcCcH-
Confidence 33355566666666666788877775 4577999999864 3 68889999999988322211 111
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhc-CCcHHHHHhhcC-CCHHHHHHHHHHHH
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEF-TDTKVQRAAAGALR 232 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~-~~~~v~~~a~~~L~ 232 (720)
....+.+.+.|.++.. +-+..|++.|..++. ++..++.++.. ++++.|+.+++. .+..+...++.+|.
T Consensus 333 -~~La~~~~~~L~~~~~--------~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~ 402 (778)
T 3opb_A 333 -KQLSEIFINAISRRIV--------PKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA 402 (778)
T ss_dssp -HHHHHHHHHHTTTCCH--------HHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 1245666666666543 458999999999998 66667666655 569999999985 67889999999999
Q ss_pred HhccCChh--------------------------------------cHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 004992 233 TLAFKNDE--------------------------------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG 274 (720)
Q Consensus 233 ~L~~~~~~--------------------------------------~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~ 274 (720)
|++...+. ++..+.+.|++|.|+.+++++++.++..++++|.
T Consensus 403 NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~ 482 (778)
T 3opb_A 403 NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIY 482 (778)
T ss_dssp HTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99973331 3456678999999999999999999999999999
Q ss_pred HhhcCCcchHHHHHHcCChHHHHHhhccCChH---HHHHHHHHHHHHhccCcchhhHHH---hcCChHHHHHHhcC-CCH
Q 004992 275 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE---SQREAALLLGQFAATDSDCKVHIV---QRGAVRPLIEMLQS-PDV 347 (720)
Q Consensus 275 nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~---~~~~~~~L~~ll~~-~~~ 347 (720)
||+.. +..+..+++.|+++.|+.++.+.... .+..|+.+|.+++.... ....+- ..|+++.|+.+|.. +..
T Consensus 483 nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n-p~~~f~~~~~~~aI~pLv~LL~~~~~~ 560 (778)
T 3opb_A 483 NITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN-PGLIFKKYSALNAIPFLFELLPRSTPV 560 (778)
T ss_dssp HHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC-HHHHSSSSCSTTHHHHHHHTSCCSSSC
T ss_pred HHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC-HHHHcCCCccccchHHHHHHcCCCCCc
Confidence 99755 88899999999999999999887544 89999999999984322 111111 13889999999983 211
Q ss_pred -------------HHHHHHHHHHHHHhhhhcCc-----chhhhhhhc-CCHHHHHHHhcCCChhHHHHHHHHHHhcccCC
Q 004992 348 -------------QLREMSAFALGRLAQVITDM-----HNQAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 408 (720)
Q Consensus 348 -------------~v~~~a~~~L~~l~~~~~~~-----~~~~~l~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (720)
.-+..|+.+|.||+. .+ +.+..++.. |+++.|..++.+.+..+|+.|+++++||+.++
T Consensus 561 ~~~~l~~~~~~~~l~~feAL~ALTNLAs---~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~ 637 (778)
T 3opb_A 561 DDNPLHNDEQIKLTDNYEALLALTNLAS---SETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP 637 (778)
T ss_dssp SSCC---CCCCCHHHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG
T ss_pred ccccccccccccHHHHHHHHHHHHHHhc---CCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Confidence 227799999999999 54 336667774 89999999999999999999999999999877
Q ss_pred Cch-hHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcC-Ccccch
Q 004992 409 DNV-ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRT 486 (720)
Q Consensus 409 ~~~-~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~ 486 (720)
+.. ..+...+. + ...+-++.|+.+++.++.++|.+|+++|.+++. .+....
T Consensus 638 e~i~~k~~~~~~-~--------------------------~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~ 690 (778)
T 3opb_A 638 LTIAAKFFNLEN-P--------------------------QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAK 690 (778)
T ss_dssp GGTGGGTSCCSS-H--------------------------HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhhcC-c--------------------------hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHH
Confidence 654 34433220 0 011236789999999999999999999999964 444555
Q ss_pred hhhcc-CcHHHHHHhhcC--CCchhhhhHHHHHHHHHhh
Q 004992 487 IFIDG-GGLELLLGLLGS--TNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 487 ~~~~~-~~~~~L~~ll~~--~~~~v~~~a~~aL~~L~~~ 522 (720)
.+++. ++++.|+.++.+ ++++++.+++.++.||+..
T Consensus 691 ~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 691 ELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 55565 899999999999 8999999999999999974
No 35
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.92 E-value=6.4e-25 Score=222.08 Aligned_cols=147 Identities=34% Similarity=0.522 Sum_probs=131.1
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhH
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 623 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 623 (720)
..++.++.++|++|.++|+.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+|+|+|||.++++.+++
T Consensus 166 ~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~ 245 (312)
T 3hqi_A 166 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 245 (312)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred HHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChh
Q 004992 624 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 690 (720)
Q Consensus 624 ~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~ 690 (720)
.+++.+|++|+++.|+..|+++|.+.++.+||..++.+|+.|++..|.+.|++||..||.++..+++
T Consensus 246 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g 312 (312)
T 3hqi_A 246 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999987763
No 36
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.90 E-value=7.3e-25 Score=194.83 Aligned_cols=129 Identities=36% Similarity=0.558 Sum_probs=99.2
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhH
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 623 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 623 (720)
..++.++.++|+++.++|+.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+++|+|||.++++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 96 (145)
T 4eoz_A 17 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 96 (145)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred HHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHH
Confidence 56889999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHH
Q 004992 624 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRH 672 (720)
Q Consensus 624 ~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~ 672 (720)
.+++.+|++|+++.|++.|+++|.+.++.+||+.++.+|+.|++..|++
T Consensus 97 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 97 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT 145 (145)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhcC
Confidence 9999999999999999999999999999999999999999999988863
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.8e-21 Score=207.02 Aligned_cols=381 Identities=15% Similarity=0.111 Sum_probs=289.6
Q ss_pred HHHHHHHHHHHcc-ChhhHH-HHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcC
Q 004992 80 AKRATHVLAELAK-NEEVVN-WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (720)
Q Consensus 80 ~~~a~~~L~~l~~-~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 157 (720)
...++.++..+-- .|+... .+...|..+.+.+.+.+... ..+...+++.|...|.+..+|..+ ..+
T Consensus 229 ~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~-----------~~~~~a~L~lLsaACi~~~cR~~I-~~~ 296 (778)
T 3opb_A 229 LSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQD-----------LQFTKELLRLLSSACIDETMRTYI-TEN 296 (778)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCC-----------HHHHHHHHHHHHHHCCSHHHHHHH-HHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHhCCcHHHHHH-HHh
Confidence 5556666666655 355544 44466888888888865433 167777888888888888998887 456
Q ss_pred ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 004992 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (720)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (720)
+++.|..+++. + +++..|+-+|..+..........+ ....+.+.+.+.+++...+..|++.|.+++.
T Consensus 297 ~~~~L~~~l~~--~--------~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl- 363 (778)
T 3opb_A 297 YLQLLERSLNV--E--------DVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAISRRIVPKVEMSVEALAYLSL- 363 (778)
T ss_dssp HHHHHHHHTTS--G--------GGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcc--H--------HHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-
Confidence 77999999865 2 778888888888875332221111 1255777888888776679999999999997
Q ss_pred ChhcHHHHHh-CCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcc---------------------------------
Q 004992 238 NDENKNQIVE-CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN--------------------------------- 282 (720)
Q Consensus 238 ~~~~~~~i~~-~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~--------------------------------- 282 (720)
+++.++.+.+ .|+++.|+.++++ ++..+..-++.+|.|++.+.+.
T Consensus 364 ~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~ 443 (778)
T 3opb_A 364 KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE 443 (778)
T ss_dssp SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHH
T ss_pred CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchH
Confidence 6777777775 5669999999995 6778999999999999864331
Q ss_pred -----hHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHH---HHHHHH
Q 004992 283 -----IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ---LREMSA 354 (720)
Q Consensus 283 -----~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~---v~~~a~ 354 (720)
.+..+.+.|+++.|+.++.+.++.++..++++|.|++. ++.++..+++.|+++.|+.++.+.... .+..|+
T Consensus 444 ~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 444 DILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHH
Confidence 34556678999999999999999999999999999984 688999999999999999999886544 899999
Q ss_pred HHHHHHhhhhcCcchhhhhh---hcCCHHHHHHHhcC-CCh-------------hHHHHHHHHHHhcccCCCc-----hh
Q 004992 355 FALGRLAQVITDMHNQAGIA---HNGGLVPLLKLLDS-KNG-------------SLQHNAAFALYGLADNEDN-----VA 412 (720)
Q Consensus 355 ~~L~~l~~~~~~~~~~~~l~---~~~~i~~l~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~~~-----~~ 412 (720)
.+|.+++. .......+. ..+++++|+++|.. +.. .-+..|+.+|.||+..+.+ +.
T Consensus 523 ~ALArLli---s~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~ 599 (778)
T 3opb_A 523 RALTRMLI---FTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCK 599 (778)
T ss_dssp HHHHHHHH---TSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHh---cCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHH
Confidence 99999997 333222221 13789999999973 221 1277999999999987633 33
Q ss_pred HHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccc-hhhhcc
Q 004992 413 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR-TIFIDG 491 (720)
Q Consensus 413 ~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~ 491 (720)
.++.. .+.++.|..++.++++.+|..|+++++||+.+++.. ..+...
T Consensus 600 ~Ii~~--------------------------------~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~ 647 (778)
T 3opb_A 600 HIVST--------------------------------KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNL 647 (778)
T ss_dssp HHHHS--------------------------------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCC
T ss_pred HHHHh--------------------------------cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhh
Confidence 33332 246778889999999999999999999999887753 233222
Q ss_pred C------cHHHHHHhhcCCCchhhhhHHHHHHHHHh
Q 004992 492 G------GLELLLGLLGSTNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 492 ~------~~~~L~~ll~~~~~~v~~~a~~aL~~L~~ 521 (720)
+ .++.|+.|+.+++.++|..|+++|++++.
T Consensus 648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 2 37899999999999999999999999964
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=1.1e-21 Score=187.10 Aligned_cols=200 Identities=26% Similarity=0.368 Sum_probs=186.0
Q ss_pred hcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchH
Q 004992 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (720)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~ 284 (720)
..+..+.|..+++++++.++..|+++|.+++.+++..+..+.+.|+++.|+.+|.++++.++..|+++|+|++..++..+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45788999999999999999999999999998788999999999999999999999999999999999999998888888
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhh
Q 004992 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (720)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (720)
..+.+.|+++.|+.++.++++.++..++++|.|++..++.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~-- 167 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-- 167 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--
Confidence 999999999999999999999999999999999998777777888899999999999999999999999999999998
Q ss_pred cCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 365 TDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 365 ~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
..+..+..+.+.|+++.|++++.+.++.++..|+++|.+|+.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 346777888899999999999999999999999999999975
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=1.7e-21 Score=185.86 Aligned_cols=200 Identities=24% Similarity=0.336 Sum_probs=186.5
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (720)
..+..+.|+.+|.+.+. +++..|+++|.+++..++..+..+.+.|+++.|+.+|+++++.++..|+++|.++
T Consensus 10 ~~~~~~~l~~LL~s~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQ--------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (210)
T ss_dssp ---CHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45788999999988766 9999999999999987888888999999999999999999999999999999999
Q ss_pred ccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHH
Q 004992 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (720)
Q Consensus 235 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (720)
+.+++..+..+.+.|+++.|+.+|+++++.++..++++|+|++..++.....+.+.|+++.|+.++.++++.++..++++
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 98788999999999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred HHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 315 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
|.|++..++..+..+.+.|+++.|+.++.+.++.+++.|+++|.+++.
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999998778888889999999999999999999999999999999975
No 40
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=168.72 Aligned_cols=104 Identities=29% Similarity=0.551 Sum_probs=94.3
Q ss_pred hhcCCCcceEEEEECC----eEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChh
Q 004992 546 FVNNATLSDVTFLVEG----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 621 (720)
Q Consensus 546 ~~~~~~~~Dv~~~~~~----~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~ 621 (720)
++.++.++|+++.+++ +.|+|||.||+++|+||++||.++|.|+. ..|.++++++++|+.+++|+|||.++++.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 6788999999999998 89999999999999999999999999988 899999999999999999999999999999
Q ss_pred hHHHHHHHHhhhChHHHHHHHHHHHHhcC
Q 004992 622 IAQDLLRAADQYLLEGLKRLCEYTIAQDI 650 (720)
Q Consensus 622 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~i 650 (720)
++.+++.+|++|+++.|++.|+++|.+++
T Consensus 81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998754
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=1.7e-20 Score=185.43 Aligned_cols=210 Identities=22% Similarity=0.247 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHhhccccc------hHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHH-hhcCCCCcccccCCCc
Q 004992 55 LLSEVSAQVNVLNTTFSW------LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK-HLQAPPTSEADRNLKP 127 (720)
Q Consensus 55 ~~~~i~~ll~~L~~~l~~------~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~~~~~ 127 (720)
....++..++.|.+.... .+.+.+.+..|+..|.+++.+.++...+.+.|+++.|+. +|.+++.
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~--------- 96 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------- 96 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH---------
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH---------
Confidence 344455666666653110 023455799999999999998888888999999999999 9998766
Q ss_pred chHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhc
Q 004992 128 FEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (720)
Q Consensus 128 ~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (720)
.+|..|+|+|++++ +++.++..+++.|+++.|+.+|+.+.+. ++++.|+|+|.+++.+++.....+...
T Consensus 97 ---~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~-------~v~~~A~~ALsnl~~~~~~~~~~~~~~ 166 (296)
T 1xqr_A 97 ---GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD-------TVRVKALFAISCLVREQEAGLLQFLRL 166 (296)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCH-------HHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCH-------HHHHHHHHHHHHHHcCCcHHHHHHHHC
Confidence 99999999999999 8899999999999999999999864332 899999999999998788777788889
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~ 283 (720)
|+++.|+.+|++++..++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..++++|+||+...+..
T Consensus 167 ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 167 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 99999999999999999999999999999888889999999999999999999999999999999999998774443
No 42
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.86 E-value=7.1e-22 Score=168.55 Aligned_cols=103 Identities=29% Similarity=0.441 Sum_probs=95.2
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhH
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 623 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 623 (720)
.+++.++.++|+++.++|+.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+++|+|||.+.++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~ 96 (120)
T 2if5_A 17 NEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANV 96 (120)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHH
Q 004992 624 QDLLRAADQYLLEGLKRLCEYTI 646 (720)
Q Consensus 624 ~~ll~~A~~~~~~~l~~~c~~~l 646 (720)
.+++.+|++|+++.|++.|+++|
T Consensus 97 ~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 97 GDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh
Confidence 99999999999999999999987
No 43
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.86 E-value=1.8e-21 Score=167.83 Aligned_cols=105 Identities=23% Similarity=0.421 Sum_probs=100.4
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceec-CCCCHHHHHHHHHHHhcCCcccChhh
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI-PNIRWEVFELMMRFIYTGSVDVTLDI 622 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Yt~~~~~~~~~ 622 (720)
+.++.++.++|++|.++|+.|+|||.||+++|+||++||.++|.| ....|.+ +++++++|+.+++|+|||.+.++.++
T Consensus 21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~ 99 (127)
T 1r29_A 21 NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLREGN 99 (127)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHH
Confidence 467899999999999999999999999999999999999999998 7789999 89999999999999999999999999
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHHhc
Q 004992 623 AQDLLRAADQYLLEGLKRLCEYTIAQD 649 (720)
Q Consensus 623 ~~~ll~~A~~~~~~~l~~~c~~~l~~~ 649 (720)
+.+++.+|++|+++.|++.|+++|.++
T Consensus 100 ~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 100 IMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999763
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=2.4e-20 Score=184.35 Aligned_cols=226 Identities=16% Similarity=0.128 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHH-hhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhh
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll 258 (720)
+-+..|+..|.+++. +.++...+...|+++.|+. +|.++++.++..|+++|++++.+++..+..+++.|++|.|+.+|
T Consensus 55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 677889999999998 4557777888999999999 99999999999999999999998899999999999999999999
Q ss_pred cC-CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHH
Q 004992 259 RS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (720)
Q Consensus 259 ~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 337 (720)
++ ++..++..|+|+|+|++.+++...+.+.+.|+++.|+.++.+++..++..++|+|.+++.++++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 85 48899999999999999888887788899999999999999999999999999999999888888999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhc-CCH----HHHHHHhcCC--ChhHHHHHHHHHHhcccCC
Q 004992 338 LIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHN-GGL----VPLLKLLDSK--NGSLQHNAAFALYGLADNE 408 (720)
Q Consensus 338 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~-~~i----~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~ 408 (720)
|+.+|.++++.+++.++.+|.+++. +.+......... ..+ ..-.+-+... +.++...+..++.++...+
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~--~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVT--DFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHT--TCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHh--CChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999998 222222222111 112 1222233322 4677788888888887543
No 45
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.85 E-value=1.2e-21 Score=171.24 Aligned_cols=109 Identities=25% Similarity=0.386 Sum_probs=102.9
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecC-CCCHHHHHHHHHHHhcCCcccChhh
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI 622 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~~ 622 (720)
++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.|. ..|.++ ++++++|+.+|+|+|||.+.++.++
T Consensus 28 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~ 105 (138)
T 2z8h_A 28 NDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILSKDN 105 (138)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccCHHH
Confidence 4678899999999999999999999999999999999999988764 478895 8999999999999999999999999
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHHhcCChhh
Q 004992 623 AQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 654 (720)
Q Consensus 623 ~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~ 654 (720)
+.+++.+|++|+++.|++.|+++|..+++.+|
T Consensus 106 v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn 137 (138)
T 2z8h_A 106 VDEVCRCVEFLSVHNIEESCFQFLKFKFLDST 137 (138)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999998877
No 46
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=170.03 Aligned_cols=103 Identities=24% Similarity=0.411 Sum_probs=94.0
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCC--CCCCceecCCCCHHHHHHHHHHHhcCCcccChh
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 621 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~ 621 (720)
++++.++.++||+|.++|+.|+|||.||+++|+||++||.++|.+ +....|.++++++++|+.+|+|+|||.+.++.+
T Consensus 39 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~ 118 (144)
T 2ppi_A 39 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED 118 (144)
T ss_dssp HHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Confidence 468889999999999999999999999999999999999998875 677899999999999999999999999999999
Q ss_pred hHHHHHHHHhhhChHHHHHHHHHHH
Q 004992 622 IAQDLLRAADQYLLEGLKRLCEYTI 646 (720)
Q Consensus 622 ~~~~ll~~A~~~~~~~l~~~c~~~l 646 (720)
++.+++.+|++|+++.|++.|+++|
T Consensus 119 ~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 119 TIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 9999999999999999999999876
No 47
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.84 E-value=2.3e-21 Score=164.62 Aligned_cols=101 Identities=25% Similarity=0.381 Sum_probs=94.5
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhH
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 623 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 623 (720)
++++.++.++|+++.++|+.|+|||.||+++|+||++||.+++ ...|.++++++++|+.+++|+|||.+.++.+++
T Consensus 16 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v 91 (119)
T 3b84_A 16 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR 91 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 4678899999999999999999999999999999999998876 568999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHh
Q 004992 624 QDLLRAADQYLLEGLKRLCEYTIAQ 648 (720)
Q Consensus 624 ~~ll~~A~~~~~~~l~~~c~~~l~~ 648 (720)
.+++.+|++|+++.|++.|+++|.+
T Consensus 92 ~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 92 DQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999999998875
No 48
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.84 E-value=2.5e-20 Score=207.79 Aligned_cols=411 Identities=15% Similarity=0.106 Sum_probs=293.4
Q ss_pred hhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChH
Q 004992 29 DEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVP 107 (720)
Q Consensus 29 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~ 107 (720)
.|+.+++|+.+....+........... .+.++..+...+.. ++..+|..|+.+|..++.. +.. .....++|
T Consensus 174 ~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~ 245 (588)
T 1b3u_A 174 SDDTPMVRRAAASKLGEFAKVLELDNV---KSEIIPMFSNLASD--EQDSVRLLAVEACVNIAQLLPQE---DLEALVMP 245 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHTSCHHHH---HHTHHHHHHHHHTC--SCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcHHhH---HHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHH
Confidence 566777777766654333221111111 12233333332222 2556899999999988763 221 11233778
Q ss_pred HHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHH
Q 004992 108 ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD 187 (720)
Q Consensus 108 ~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~ 187 (720)
.+..++++.++ .+|..++.+|+.++.. ..........++.++.++++.+. +++..+++
T Consensus 246 ~l~~~~~d~~~------------~vR~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~~~--------~vr~~a~~ 303 (588)
T 1b3u_A 246 TLRQAAEDKSW------------RVRYMVADKFTELQKA--VGPEITKTDLVPAFQNLMKDCEA--------EVRAAASH 303 (588)
T ss_dssp HHHHHHTCSSH------------HHHHHHHHTHHHHHHH--HCHHHHHHTHHHHHHHHHTCSSH--------HHHHHHHH
T ss_pred HHHHHccCCCH------------HHHHHHHHHHHHHHHH--hCcccchhHHHHHHHHHhCCCcH--------HHHHHHHH
Confidence 88888887777 8999999999999921 11122334578999999987655 99999999
Q ss_pred HHHHhhhcCchh-hHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHH
Q 004992 188 AITNLAHENSSI-KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266 (720)
Q Consensus 188 ~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~ 266 (720)
+|..++...... +........+|.+..+++++++.+|..++++|..++. .-...... ..++|.+..++++++++||
T Consensus 304 ~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~--~~~~~~~~-~~l~p~l~~~l~d~~~~Vr 380 (588)
T 1b3u_A 304 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP--ILGKDNTI-EHLLPLFLAQLKDECPEVR 380 (588)
T ss_dssp HHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH--HHCHHHHH-HHTHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--HhhHhHHH-HHHHHHHHHHhCCCchHHH
Confidence 999998644321 1112334677889999999999999999999999984 11222222 3488999999999999999
Q ss_pred HHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCC
Q 004992 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 346 (720)
Q Consensus 267 ~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 346 (720)
..++.++..+...... ......++|.+..++.+.+|.+|..++.++..++.. ....+....++|.++.++.+++
T Consensus 381 ~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~ 454 (588)
T 1b3u_A 381 LNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ---LGVEFFDEKLNSLCMAWLVDHV 454 (588)
T ss_dssp HHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---HCGGGCCHHHHHHHHHGGGCSS
T ss_pred HHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHhcCCc
Confidence 9999999888643221 122345788899999999999999999999998742 1111223346789999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccch
Q 004992 347 VQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 426 (720)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~ 426 (720)
..+|+.|+.+++.++...+ ..+....+++.+..++.++++.+|..+++++..++..-..
T Consensus 455 ~~Vr~~a~~~l~~l~~~~~-----~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---------------- 513 (588)
T 1b3u_A 455 YAIREAATSNLKKLVEKFG-----KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ---------------- 513 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----HHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH----------------
Confidence 9999999999999998332 1233456788888888889999999999999988642110
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCc
Q 004992 427 EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP 506 (720)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 506 (720)
..+...+++.++.++++++++||..++.+|+.++...... ......+|.|..++.++++
T Consensus 514 -------------------~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~d~d~ 572 (588)
T 1b3u_A 514 -------------------DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDV 572 (588)
T ss_dssp -------------------HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSH
T ss_pred -------------------HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh--hhHHHHHHHHHHHcCCCch
Confidence 1123457888999999999999999999999998654322 2234567888899999999
Q ss_pred hhhhhHHHHHHHHH
Q 004992 507 KQQLDGAVALFKLA 520 (720)
Q Consensus 507 ~v~~~a~~aL~~L~ 520 (720)
++|..|+.++..+.
T Consensus 573 ~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 573 DVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999998775
No 49
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.84 E-value=3.4e-21 Score=167.37 Aligned_cols=106 Identities=25% Similarity=0.347 Sum_probs=93.1
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhH
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 623 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 623 (720)
++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++ ...|.++++++++|+.+|+|+|||.+.++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v 92 (135)
T 2yy9_A 17 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR 92 (135)
T ss_dssp HHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHH
Confidence 4688999999999999999999999999999999999999876 568999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHhcCChh
Q 004992 624 QDLLRAADQYLLEGLKRLCEYTIAQDISLE 653 (720)
Q Consensus 624 ~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~ 653 (720)
.+++.+|++|+++.|++.|+++|.+++...
T Consensus 93 ~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~ 122 (135)
T 2yy9_A 93 DQVLLAAKELRVPEAVELCQSFQPQTSVGQ 122 (135)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999998876543
No 50
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.84 E-value=1.1e-20 Score=161.15 Aligned_cols=102 Identities=25% Similarity=0.399 Sum_probs=95.8
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhH
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 623 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 623 (720)
++++.++.++||++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+++|+|||.++++.+++
T Consensus 20 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~ 94 (121)
T 1buo_A 20 NQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDL 94 (121)
T ss_dssp HHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHH
Confidence 567889999999999999999999999999999999999763 568999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHhcC
Q 004992 624 QDLLRAADQYLLEGLKRLCEYTIAQDI 650 (720)
Q Consensus 624 ~~ll~~A~~~~~~~l~~~c~~~l~~~i 650 (720)
.+++.+|++|+++.|++.|+++|.+.|
T Consensus 95 ~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 95 DDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999998643
No 51
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=159.55 Aligned_cols=100 Identities=22% Similarity=0.400 Sum_probs=93.7
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecC--CCCHHHHHHHHHHHhcCCcccChh
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP--NIRWEVFELMMRFIYTGSVDVTLD 621 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Yt~~~~~~~~ 621 (720)
+.++.++.++|+++.++|+.|+|||.||+++|+||++||.++ .+..|.++ ++++++|+.+++|+|||.+.++.+
T Consensus 14 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~ 89 (116)
T 2vpk_A 14 NKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSW 89 (116)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHH
Confidence 467889999999999999999999999999999999999876 35677777 999999999999999999999999
Q ss_pred hHHHHHHHHhhhChHHHHHHHHHHHH
Q 004992 622 IAQDLLRAADQYLLEGLKRLCEYTIA 647 (720)
Q Consensus 622 ~~~~ll~~A~~~~~~~l~~~c~~~l~ 647 (720)
++.+++.+|++|+++.|++.|+++|.
T Consensus 90 ~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 90 NVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999985
No 52
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=169.68 Aligned_cols=197 Identities=25% Similarity=0.347 Sum_probs=171.5
Q ss_pred ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 004992 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (720)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (720)
.++.++++|.+++... +++..|++.|.+++..++.++..+.+.|++|.|+++|+++++.++..|+++|.||+.+
T Consensus 9 ~i~~lV~lL~s~~~~~------~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 9 TLERAVSMLEADHMLP------SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CHHHHHHTCCSSCCCH------HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHhCCCCchH------HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 5899999998775532 6778899999999988999999999999999999999999999999999999999987
Q ss_pred ChhcHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc---------------
Q 004992 238 NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--------------- 301 (720)
Q Consensus 238 ~~~~~~~i~~~g~l~~L~~ll~-~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~--------------- 301 (720)
+++++..+.+.|++|.|+.+|+ +++.++++.++.+|+||+.. +..+..+.+ ++++.|++++.
T Consensus 83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCccccccccc
Confidence 8999999999999999999998 57899999999999999865 566666666 46899988763
Q ss_pred -cCChHHHHHHHHHHHHHhccCcchhhHHHhc-CChHHHHHHhcC------CCHHHHHHHHHHHHHHhh
Q 004992 302 -SCCSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQS------PDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 302 -~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~L~~l~~ 362 (720)
..+.+++++++.+|.|++..+++.+..+.+. |+++.|+.+++. .+...++.|+.+|.||+.
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 1246899999999999998777888888875 678999999864 366899999999999986
No 53
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.82 E-value=2.2e-20 Score=158.48 Aligned_cols=99 Identities=22% Similarity=0.365 Sum_probs=93.1
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhH
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 623 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 623 (720)
++++.++.++||++.++|+.|+|||.||+++|+||++||.+ +...|.++++++++|+.+++|+|||.+.++.+++
T Consensus 19 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~-----~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~ 93 (119)
T 2q81_A 19 NQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD-----QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENV 93 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH-----CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC-----CCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 46788999999999999999999999999999999999986 3457889999999999999999999999999999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHH
Q 004992 624 QDLLRAADQYLLEGLKRLCEYTIA 647 (720)
Q Consensus 624 ~~ll~~A~~~~~~~l~~~c~~~l~ 647 (720)
.+++.+|++|+++.|++.|+++|.
T Consensus 94 ~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 94 DDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999885
No 54
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=167.56 Aligned_cols=196 Identities=21% Similarity=0.276 Sum_probs=171.6
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~ 183 (720)
.++.|+++|.+++. ++.++..|+++|.+|+ .+++.+..+...|++|.|+.+|++.+. ++++
T Consensus 9 ~i~~lV~lL~s~~~----------~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~--------~vq~ 70 (233)
T 3tt9_A 9 TLERAVSMLEADHM----------LPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE--------DVQR 70 (233)
T ss_dssp CHHHHHHTCCSSCC----------CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH--------HHHH
T ss_pred cHHHHHHHhCCCCc----------hHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH--------HHHH
Confidence 68999999988765 2268888999999999 889999999999999999999998665 9999
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc---
Q 004992 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--- 259 (720)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~--- 259 (720)
.|+|+|.||+..+++++..+.+.|++|.|+++|+ .++.++++.++.+|++|+. .+.++..+.+. ++|.|+.++.
T Consensus 71 ~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~ 148 (233)
T 3tt9_A 71 AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPF 148 (233)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccc
Confidence 9999999999988899999999999999999997 5789999999999999996 77888888875 6999988653
Q ss_pred -------------CCCHHHHHHHHHHHHHhhcCCcchHHHHHHc-CChHHHHHhhccC------ChHHHHHHHHHHHHHh
Q 004992 260 -------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSSC------CSESQREAALLLGQFA 319 (720)
Q Consensus 260 -------------~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~-~~l~~L~~ll~~~------~~~~~~~a~~~L~~l~ 319 (720)
..+++++..|..+|.||+..+++.++.+.+. |+++.|+.+++.+ +...++.|+.+|.||+
T Consensus 149 sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 149 SGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred cCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 1367999999999999998777888999876 5679999999853 4578999999999997
Q ss_pred c
Q 004992 320 A 320 (720)
Q Consensus 320 ~ 320 (720)
.
T Consensus 229 ~ 229 (233)
T 3tt9_A 229 Y 229 (233)
T ss_dssp C
T ss_pred h
Confidence 4
No 55
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.81 E-value=6.7e-21 Score=163.70 Aligned_cols=100 Identities=24% Similarity=0.401 Sum_probs=94.6
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCC-CCHHHHHHHHHHHhcCCcccChhh
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPN-IRWEVFELMMRFIYTGSVDVTLDI 622 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~-~~~~~~~~~l~~~Yt~~~~~~~~~ 622 (720)
++++.++.++||++.++|+.|+|||.||+++|+||++||.+++.| ...|.+++ +++++|+.+++|+|||.+.++.++
T Consensus 24 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~ 101 (125)
T 3ohu_A 24 NDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSREN 101 (125)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECTTT
T ss_pred HHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECHHH
Confidence 467889999999999999999999999999999999999998877 66899998 999999999999999999999999
Q ss_pred HHHHHHHHhhhChHHHHHHHHHH
Q 004992 623 AQDLLRAADQYLLEGLKRLCEYT 645 (720)
Q Consensus 623 ~~~ll~~A~~~~~~~l~~~c~~~ 645 (720)
+.+++.+|++|+++.|++.|+++
T Consensus 102 v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 102 IREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp HHHHHHHHHHHTBSSCTTSSCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHh
Confidence 99999999999999999999765
No 56
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.80 E-value=8.7e-21 Score=162.31 Aligned_cols=102 Identities=25% Similarity=0.423 Sum_probs=92.7
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecC-CCCHHHHHHHHHHHhcCCcccChhh
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI 622 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~~ 622 (720)
++++.++.++||++.++|+.|+|||.||+++|+||++||.+++.|+ ..|.++ ++++++|+.+++|+|||.+.++.++
T Consensus 21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~ 98 (124)
T 2ihc_A 21 NDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSKEN 98 (124)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEETTT
T ss_pred HHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCHHH
Confidence 5688899999999999999999999999999999999999988764 578885 8999999999999999999999999
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHH
Q 004992 623 AQDLLRAADQYLLEGLKRLCEYTIA 647 (720)
Q Consensus 623 ~~~ll~~A~~~~~~~l~~~c~~~l~ 647 (720)
+.+++.+|++|+++.|++.|+++|.
T Consensus 99 v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 99 VDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 57
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.80 E-value=2e-20 Score=161.41 Aligned_cols=102 Identities=24% Similarity=0.378 Sum_probs=89.5
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecC-CCCHHHHHHHHHHHhcCCcccChhh
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI 622 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~~ 622 (720)
+.++.++.++|+++.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|+.+++|+|||.+.++.++
T Consensus 25 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~ 100 (129)
T 3ga1_A 25 NEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGD 100 (129)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTT
T ss_pred HHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHH
Confidence 467889999999999999999999999999999999999875 56789997 8999999999999999999999999
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHHhc
Q 004992 623 AQDLLRAADQYLLEGLKRLCEYTIAQD 649 (720)
Q Consensus 623 ~~~ll~~A~~~~~~~l~~~c~~~l~~~ 649 (720)
+.+++.+|++|+++.|++.|+++|.+.
T Consensus 101 ~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 101 QDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999864
No 58
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.79 E-value=2.9e-18 Score=191.13 Aligned_cols=400 Identities=14% Similarity=0.082 Sum_probs=278.8
Q ss_pred HHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHH
Q 004992 78 AAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD 155 (720)
Q Consensus 78 ~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~ 155 (720)
..|..|+..+..++.. +.. . ...+++.+..++.+++. .||..++.+|+.++ ..+. ....
T Consensus 141 ~~R~~a~~~l~~~~~~~~~~---~-~~~l~~~l~~l~~d~~~------------~VR~~a~~~l~~l~~~~~~---~~~~ 201 (588)
T 1b3u_A 141 TSRTSACGLFSVCYPRVSSA---V-KAELRQYFRNLCSDDTP------------MVRRAAASKLGEFAKVLEL---DNVK 201 (588)
T ss_dssp HHHHHHGGGHHHHTTTSCHH---H-HHHHHHHHHHHHTCSCH------------HHHHHHHHHHHHHHHTSCH---HHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHHhcH---HhHH
Confidence 3455555555555442 110 1 12246677777777666 99999999999999 2221 1233
Q ss_pred cCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004992 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (720)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (720)
...++.+..++.+.+. .++..|+.+|..++...+.. .....+++.+..++.++++.+|..++.+|..++
T Consensus 202 ~~l~~~l~~~~~d~~~--------~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~ 270 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQD--------SVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ 270 (588)
T ss_dssp HTHHHHHHHHHTCSCH--------HHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 5678888888877655 89999999999998654421 223457888899999999999999999999998
Q ss_pred cCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch-HHHHHHcCChHHHHHhhccCChHHHHHHHHH
Q 004992 236 FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI-KKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (720)
Q Consensus 236 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (720)
... .... ....+++.+..+++++++.+|..++.++..++...... ........+++.+..++.+.++.+|..++++
T Consensus 271 ~~~--~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~ 347 (588)
T 1b3u_A 271 KAV--GPEI-TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347 (588)
T ss_dssp HHH--CHHH-HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTT
T ss_pred HHh--Cccc-chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 521 1122 23357999999999999999999999999998543321 1112345678899999999999999999999
Q ss_pred HHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHH
Q 004992 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 394 (720)
Q Consensus 315 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~ 394 (720)
|..++... ........++|.+..++++.++.+|..++.++..+....+ ........++.+..++.++++.+|
T Consensus 348 l~~l~~~~---~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-----~~~~~~~~lp~l~~~~~d~~~~vr 419 (588)
T 1b3u_A 348 IMGLSPIL---GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG-----IRQLSQSLLPAIVELAEDAKWRVR 419 (588)
T ss_dssp GGGGHHHH---CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-----HHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHh---hHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHhcCCCchHH
Confidence 99987421 1122234578999999999999999999999999987321 111223567888888999999999
Q ss_pred HHHHHHHHhcccCCCchhHHHhhcccccccchhh-hhhhhHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHhcchhHH
Q 004992 395 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK-----IHGRVLNHLLYLMRVAEKGVQ 468 (720)
Q Consensus 395 ~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~-~~~~~~~~~~~~~~~l~~~-----~~~~~~~~L~~ll~~~~~~v~ 468 (720)
..++.+|..++..-... +.....++.+..... .....+......+..+... ....+++.+..++.++++.+|
T Consensus 420 ~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R 497 (588)
T 1b3u_A 420 LAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHR 497 (588)
T ss_dssp HHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHH
Confidence 99999999986521110 111112222222111 1122333344444433332 234678888888888899999
Q ss_pred HHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 469 RRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 469 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
..++.+++.++..-... ......+|.|..++.+++++||..++.++..+...
T Consensus 498 ~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 498 MTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 99999999997543221 12346789999999999999999999999999864
No 59
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.78 E-value=2.9e-19 Score=150.57 Aligned_cols=93 Identities=20% Similarity=0.232 Sum_probs=86.1
Q ss_pred hcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChhhHHHH
Q 004992 547 VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDL 626 (720)
Q Consensus 547 ~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~l 626 (720)
+.++.++||++.++|+.|+|||.||+++|+||++ ....|.++++++++|+.+++|+|||.+.++.+++.++
T Consensus 25 r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~l 95 (119)
T 3m5b_A 25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPL 95 (119)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHH
T ss_pred HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHH
Confidence 5678999999999999999999999999999985 3457899999999999999999999999999999999
Q ss_pred HHHHhhhChHHHHHHHHHHHHh
Q 004992 627 LRAADQYLLEGLKRLCEYTIAQ 648 (720)
Q Consensus 627 l~~A~~~~~~~l~~~c~~~l~~ 648 (720)
+.+|++|+++.|++.|++++..
T Consensus 96 l~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 96 QEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 9999999999999999998765
No 60
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.76 E-value=1.5e-18 Score=146.08 Aligned_cols=92 Identities=27% Similarity=0.471 Sum_probs=86.6
Q ss_pred hhhhcCCCcceEEEEECCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCCc-ccChhh
Q 004992 544 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSV-DVTLDI 622 (720)
Q Consensus 544 ~~~~~~~~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~-~~~~~~ 622 (720)
+.++.++.++|+++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+++|+|||.+ .+++++
T Consensus 23 ~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~ 97 (116)
T 3fkc_A 23 NEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDL 97 (116)
T ss_dssp HHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHH
T ss_pred HHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHH
Confidence 467889999999999999999999999999999999999864 56899999999999999999999999 799999
Q ss_pred HHHHHHHHhhhChHHHHH
Q 004992 623 AQDLLRAADQYLLEGLKR 640 (720)
Q Consensus 623 ~~~ll~~A~~~~~~~l~~ 640 (720)
+.+++.+|++|+++.|++
T Consensus 98 ~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 98 LDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHhCccccCc
Confidence 999999999999999875
No 61
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.74 E-value=1.1e-17 Score=194.17 Aligned_cols=471 Identities=14% Similarity=0.116 Sum_probs=291.5
Q ss_pred ccchhcccchhhhccchhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc
Q 004992 13 ERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK 92 (720)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~ 92 (720)
.|..+|..+-+.. .|+.+.+|+.++...+.....+....+...++.+++.+.+. +..++..++.+|..++.
T Consensus 87 ~~~~ik~~ll~~l---~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~------~~~~r~~al~~L~~i~~ 157 (852)
T 4fdd_A 87 VTDFIKSECLNNI---GDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE------DYNTCEGAFGALQKICE 157 (852)
T ss_dssp HHHHHHHHHHTTT---TCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHH
Confidence 3555555555544 34555666665554433322222233444555555555443 55679999999999987
Q ss_pred C-hhhHHHHH----hCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHH
Q 004992 93 N-EEVVNWIV----EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLL 166 (720)
Q Consensus 93 ~-~~~~~~~~----~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL 166 (720)
+ +.....-. -.+.++.++.++++++. .+|..|+++|.++. ..+..... .-.++++.+..++
T Consensus 158 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~------------~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~ 224 (852)
T 4fdd_A 158 DSAEILDSDVLDRPLNIMIPKFLQFFKHSSP------------KIRSHAVACVNQFIISRTQALML-HIDSFIENLFALA 224 (852)
T ss_dssp HHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH------------HHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHH
T ss_pred HhHHHhchhhhcchHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHc
Confidence 4 32211000 12356667777776555 89999999999888 32221000 0124567777777
Q ss_pred hccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHH
Q 004992 167 KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV 246 (720)
Q Consensus 167 ~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~ 246 (720)
.+.+. +++..++++|..++...+..-... -.++++.+...+.+.++.++..|+..+..++. ....+..+.
T Consensus 225 ~d~~~--------~vr~~a~~~L~~l~~~~~~~~~~~-l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~-~~~~~~~~~ 294 (852)
T 4fdd_A 225 GDEEP--------EVRKNVCRALVMLLEVRMDRLLPH-MHNIVEYMLQRTQDQDENVALEACEFWLTLAE-QPICKDVLV 294 (852)
T ss_dssp TCCCH--------HHHHHHHHHHHHHHHHCHHHHGGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT-STTHHHHHT
T ss_pred CCCCH--------HHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhc-chhHHHHHH
Confidence 66554 899999999999997655321111 12467788888899999999999999999985 322232221
Q ss_pred h--CCCHHHHHHhh-----------cC-----------CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhcc
Q 004992 247 E--CNALPTLILML-----------RS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (720)
Q Consensus 247 ~--~g~l~~L~~ll-----------~~-----------~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~ 302 (720)
. ..++|.++..+ .+ .+..+|..+..+|..++...+. .+ -..+++.+...+.+
T Consensus 295 ~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~-~~~l~~~l~~~l~~ 370 (852)
T 4fdd_A 295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---EL-LPHILPLLKELLFH 370 (852)
T ss_dssp TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GG-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HH-HHHHHHHHHHHhcC
Confidence 1 13566676666 23 1224688899999999754332 11 12467888888888
Q ss_pred CChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHH
Q 004992 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPL 382 (720)
Q Consensus 303 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l 382 (720)
.+|.+|..+++++++++.+....... .-.++++.++..+.++++.+|..+++++++++...+... ..-.-.+.++.+
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~~~ll~~L 447 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP--PDTYLKPLMTEL 447 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC--TTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHH
Confidence 99999999999999998765443222 224578999999999999999999999999998321111 111123467888
Q ss_pred HHHhcCCChhHHHHHHHHHHhcccCCCc-hhHHHhhcccccccchhhhhh--------------------------hh--
Q 004992 383 LKLLDSKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIVQ--------------------------AT-- 433 (720)
Q Consensus 383 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~v~~L~~~~~~~~--------------------------~~-- 433 (720)
++.+.+.++.++..|+++|.+++..... ..... .+.++.|.......+ ..
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~ 526 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQM 526 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHH
Confidence 8888888999999999999999753211 11111 111221111000000 00
Q ss_pred ----------------HH--HHHHHHHHHHHhh-------hhhhHHHHHHHHHh-----------------cchhHHHHH
Q 004992 434 ----------------KD--CVAKTLKRLEEKI-------HGRVLNHLLYLMRV-----------------AEKGVQRRV 471 (720)
Q Consensus 434 ----------------~~--~~~~~~~~l~~~~-------~~~~~~~L~~ll~~-----------------~~~~v~~~a 471 (720)
.. -+..++..+.... -..+++.++.+++. ++.+++..+
T Consensus 527 l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 606 (852)
T 4fdd_A 527 LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHH
Confidence 00 0011111111111 12234444444432 145678888
Q ss_pred HHHHHhhcCCccc--chhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 472 ALALAHLCSPDDQ--RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 472 ~~~L~~l~~~~~~--~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+.+++.++..-.. ...+...+.++.+..++.++++++|..+..++..++..-
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 660 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKAC 660 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHh
Confidence 8999988765432 222335688999999999999999999999999999653
No 62
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.73 E-value=1.7e-15 Score=159.38 Aligned_cols=343 Identities=13% Similarity=0.125 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchH
Q 004992 51 ARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (720)
Q Consensus 51 ~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~ 130 (720)
..+.....|+++++++.+..-. +-|..|+..|..++++ ++..+. .++++.|+..|+.... |.
T Consensus 15 ~~qs~~etI~~L~~Rl~~~tl~-----eDRR~Av~~Lk~~sk~--y~~~Vg-~~~l~~li~~L~~d~~----------D~ 76 (651)
T 3grl_A 15 PQHTEAETIQKLCDRVASSTLL-----DDRRNAVRALKSLSKK--YRLEVG-IQAMEHLIHVLQTDRS----------DS 76 (651)
T ss_dssp ---CHHHHHHHHHHHHHHCCSH-----HHHHHHHHHHHHTTTT--TTTHHH-HHTHHHHHHHHHSCTT----------CH
T ss_pred CCCChhhHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHH--hHHHhh-hhhHHHHHHHHhcccc----------cH
Confidence 3456778899999999887433 2488999999999864 333444 5689999999988654 33
Q ss_pred HHHHHHHHHHHHhc-cChh-----------------hHHHH-HHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHH
Q 004992 131 EVEKGSAFALGLLA-VKPE-----------------HQQLI-VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITN 191 (720)
Q Consensus 131 ~v~~~a~~~L~~L~-~~~~-----------------~~~~~-~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~ 191 (720)
++...++.+|.++. .+++ +.+.+ .+.+.++.|+.+|+..+- .++..++.+|..
T Consensus 77 e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--------~vR~~alqlL~~ 148 (651)
T 3grl_A 77 EIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--------HVRWPGVKLLTS 148 (651)
T ss_dssp HHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--------HHHHHHHHHHHH
Confidence 88889999998876 3221 22233 345789999999987665 999999999999
Q ss_pred hhhcCch-hhHHHHh-cCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCH----HH
Q 004992 192 LAHENSS-IKTRVRM-EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS----AI 265 (720)
Q Consensus 192 l~~~~~~-~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~----~v 265 (720)
++...+. .++.+.. .++++.|+.+|.+....+|..++..|.+|+.++.+.++.++-.|+++.|+.++..+.. .+
T Consensus 149 L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggiv 228 (651)
T 3grl_A 149 LLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIV 228 (651)
T ss_dssp HHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHH
T ss_pred HHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchh
Confidence 9987777 7777774 4999999999999999999999999999999888888888888999999999987544 78
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCC----hH--HHHH---HHHHHHHHhccC------cchhhHHH
Q 004992 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC----SE--SQRE---AALLLGQFAATD------SDCKVHIV 330 (720)
Q Consensus 266 ~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~--~~~~---a~~~L~~l~~~~------~~~~~~~~ 330 (720)
...|+.+|.||...|+.++..+.+.|+++.|..++..+. |. ...+ +..++.-+...+ ..+...+.
T Consensus 229 v~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~ 308 (651)
T 3grl_A 229 VEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF 308 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 899999999999999999999999999999999997542 22 2222 445555555432 23566788
Q ss_pred hcCChHHHHHHhcCC--CHHHHHHHHHHHHHHhhhhcCcchhhhhhhcC---------CHHHHHHHhcC-CChhHHHHHH
Q 004992 331 QRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQVITDMHNQAGIAHNG---------GLVPLLKLLDS-KNGSLQHNAA 398 (720)
Q Consensus 331 ~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~---------~i~~l~~ll~~-~~~~v~~~a~ 398 (720)
+.|+++.++.++... ...++..|+.+++.+.. +++.++..+.+.. .+..+..++++ ....+|.+++
T Consensus 309 ~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir--gN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~ 386 (651)
T 3grl_A 309 QCGLLQQLCTILMATGVPADILTETINTVSEVIR--GCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386 (651)
T ss_dssp HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHH
Confidence 999999999998764 67899999999999998 5667777766532 23334444544 4578899999
Q ss_pred HHHHhcccCCCchhHHHhhcccc
Q 004992 399 FALYGLADNEDNVADFIRVGGVQ 421 (720)
Q Consensus 399 ~~L~~l~~~~~~~~~l~~~~~v~ 421 (720)
.++..+..+.+..+..+....++
T Consensus 387 ~cl~ay~~~N~~~Q~~i~~~llp 409 (651)
T 3grl_A 387 YCFQCFLYKNQKGQGEIVSTLLP 409 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCHHHHHHHHHhcCC
Confidence 99999976544333333333333
No 63
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.69 E-value=3.4e-16 Score=181.76 Aligned_cols=382 Identities=15% Similarity=0.093 Sum_probs=265.3
Q ss_pred hHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHH
Q 004992 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~ 154 (720)
++.+|..++.+++.++..... . .-.+.++.|+..+.+++. .+++.++.+|+.++ ..+.....-.
T Consensus 103 ~~~vr~~~a~~i~~ia~~~~~-~--~wp~ll~~L~~~l~~~~~------------~~r~~al~~L~~i~~~~~~~~~~~~ 167 (852)
T 4fdd_A 103 SPLIRATVGILITTIASKGEL-Q--NWPDLLPKLCSLLDSEDY------------NTCEGAFGALQKICEDSAEILDSDV 167 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHTTT-T--TCTTHHHHHHHHHSCSSH------------HHHHHHHHHHHHHHHHHTTHHHHCS
T ss_pred CHHHHHHHHHHHHHHHHhcCc-c--ccHHHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHhHHHhchhh
Confidence 556899999999998873210 0 113578889999988766 89999999999999 3222211000
Q ss_pred ----HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHH
Q 004992 155 ----DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 230 (720)
Q Consensus 155 ----~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 230 (720)
-...++.++.++++.+. +++..|+++|.++....+... ......+++.+..++.++++.++..++++
T Consensus 168 ~~~~~~~il~~l~~~l~~~~~--------~vR~~A~~aL~~~~~~~~~~~-~~~~~~~l~~l~~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 168 LDRPLNIMIPKFLQFFKHSSP--------KIRSHAVACVNQFIISRTQAL-MLHIDSFIENLFALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp SSSCHHHHHHHHTTTTTCSSH--------HHHHHHHHHHHTTTTTTCHHH-HTSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 12245666666665444 999999999998886433211 01112467888888899999999999999
Q ss_pred HHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHH---cCChHHHHHhh-------
Q 004992 231 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA---AGALQPVIGLL------- 300 (720)
Q Consensus 231 L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~---~~~l~~L~~ll------- 300 (720)
|..++...+..-..... ++++.++..+.+.++.++..|+.++..++... ... .... ..+++.++..+
T Consensus 239 L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~-~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 239 LVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICK-DVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp HHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THH-HHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHH-HHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 99999744433222222 47888889999999999999999999997542 222 2221 23456666665
Q ss_pred ----cc-----------CChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhc
Q 004992 301 ----SS-----------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (720)
Q Consensus 301 ----~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (720)
.+ .++.+|+.++.+|..++...+ ..+. ..+++.+...+.+.++.+|+.|+.+|++++.
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~---~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~--- 388 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR---DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAE--- 388 (852)
T ss_dssp HHHHC------------CCCCHHHHHHHHHHHHHHHHG---GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTT---
T ss_pred HHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc---HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh---
Confidence 23 346689999999999985322 2222 2467888888899999999999999999998
Q ss_pred CcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHH
Q 004992 366 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 445 (720)
Q Consensus 366 ~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~ 445 (720)
.......-.-.++++.++.++.++++.+|..+++++.+++..... ...
T Consensus 389 ~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-------~~~------------------------- 436 (852)
T 4fdd_A 389 GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS-------QPP------------------------- 436 (852)
T ss_dssp TTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH-------SCT-------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-------chH-------------------------
Confidence 322221112245688899999999999999999999998753110 000
Q ss_pred HhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 446 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 446 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
......+++.|+..+.++++.+|..|+++|.+++..........-.+.++.|..++...+......+..++..++...
T Consensus 437 ~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~ 514 (852)
T 4fdd_A 437 DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514 (852)
T ss_dssp TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 111234778889999999999999999999999865443222233566788888888776666667788888887643
No 64
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.68 E-value=8e-15 Score=154.38 Aligned_cols=375 Identities=15% Similarity=0.152 Sum_probs=269.8
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~ 184 (720)
.|+.|+.=+++... .+-|+.|+..|..++ .+.+.. +..++++.|+..|+....+. ++.+.
T Consensus 22 tI~~L~~Rl~~~tl-----------~eDRR~Av~~Lk~~s--k~y~~~-Vg~~~l~~li~~L~~d~~D~------e~v~~ 81 (651)
T 3grl_A 22 TIQKLCDRVASSTL-----------LDDRRNAVRALKSLS--KKYRLE-VGIQAMEHLIHVLQTDRSDS------EIIGY 81 (651)
T ss_dssp HHHHHHHHHHHCCS-----------HHHHHHHHHHHHHTT--TTTTTH-HHHHTHHHHHHHHHSCTTCH------HHHHH
T ss_pred HHHHHHHHHhhccc-----------hhHHHHHHHHHHHHH--HHhHHH-hhhhhHHHHHHHHhcccccH------HHHHH
Confidence 45667666655433 167899999999999 333333 34567999999998876543 89999
Q ss_pred HHHHHHHhhhcCchh-----------------h-HHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChh-cHHHH
Q 004992 185 AADAITNLAHENSSI-----------------K-TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQI 245 (720)
Q Consensus 185 a~~~L~~l~~~~~~~-----------------~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~i 245 (720)
++.+|.++...++.. . ..+.+.+.++.|+.+|+..+..+|..++.+|..|+...+. .++.+
T Consensus 82 ~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~I 161 (651)
T 3grl_A 82 ALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQII 161 (651)
T ss_dssp HHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999998876533321 1 1234557899999999999999999999999999987776 67777
Q ss_pred Hh-CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCCh----HHHHHHHHHHHHHhc
Q 004992 246 VE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS----ESQREAALLLGQFAA 320 (720)
Q Consensus 246 ~~-~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~----~~~~~a~~~L~~l~~ 320 (720)
.. .++++.|+.+|.++...+|..++..|.+|+.++++.++.+.-.|+++.|+.++..... .+...|+.+|.||..
T Consensus 162 l~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr 241 (651)
T 3grl_A 162 LVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK 241 (651)
T ss_dssp HHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT
T ss_pred HhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh
Confidence 74 5999999999999999999999999999999999999888889999999999986543 678889999999999
Q ss_pred cCcchhhHHHhcCChHHHHHHhcCCCH------HHHHH---HHHHHHHHhhhhc----CcchhhhhhhcCCHHHHHHHhc
Q 004992 321 TDSDCKVHIVQRGAVRPLIEMLQSPDV------QLREM---SAFALGRLAQVIT----DMHNQAGIAHNGGLVPLLKLLD 387 (720)
Q Consensus 321 ~~~~~~~~~~~~~~~~~L~~ll~~~~~------~v~~~---a~~~L~~l~~~~~----~~~~~~~l~~~~~i~~l~~ll~ 387 (720)
.++.++..+.+.|+++.|..++..++. ....+ ++.++.-++..++ ...++..+.+.|+++.+++++.
T Consensus 242 ~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 242 NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred cCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 988899999999999999999975322 22333 5566666665221 2246778999999999999986
Q ss_pred CC--ChhHHHHHHHHHHhcccC-CCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc-
Q 004992 388 SK--NGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA- 463 (720)
Q Consensus 388 ~~--~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~- 463 (720)
.. ...++..|+.++..+.+. +.+...+.... ++.... ...++..|+.++.+.
T Consensus 322 ~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~-vp~~~~-----------------------~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 322 ATGVPADILTETINTVSEVIRGCQVNQDYFASVN-APSNPP-----------------------RPAIVVLLMSMVNERQ 377 (651)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCE-ESSSSC-----------------------EEHHHHHHHHHTCTTS
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhcc-CCCCCC-----------------------cChHHHHHHHHhcccc
Confidence 55 577899999999999764 44444544432 121000 011233344444443
Q ss_pred chhHHHHHHHHHHhhcCCcc-cchhhhcc----------CcH---HHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 464 EKGVQRRVALALAHLCSPDD-QRTIFIDG----------GGL---ELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 464 ~~~v~~~a~~~L~~l~~~~~-~~~~~~~~----------~~~---~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
...+|.+|+.++..+..+++ .+..+... +.+ ..|..-+-+.|+----+|+.++..+..+.
T Consensus 378 ~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n 451 (651)
T 3grl_A 378 PFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQEN 451 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCC
Confidence 56889999999988876654 22222211 111 12344444555543345778888888754
No 65
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.58 E-value=6.2e-14 Score=150.89 Aligned_cols=382 Identities=13% Similarity=0.047 Sum_probs=250.4
Q ss_pred hHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHH---
Q 004992 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ--- 151 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~--- 151 (720)
|..+|..|-..|.++.... ..+.+..|+.++.+.+. ++.+|..|+..|.++. .......
T Consensus 14 d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~----------~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 14 DRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGN----------SQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTS----------CHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCC----------ChHHHHHHHHHHHHhccccchHHHHHH
Confidence 5567888988888765420 12245667777776532 2389999999999987 2211000
Q ss_pred --------HHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCC--CH
Q 004992 152 --------LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DT 221 (720)
Q Consensus 152 --------~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~ 221 (720)
.-....+-..++..|.+.+. .+ ..++.++..++....... .-.+.++.|+..+.++ ++
T Consensus 77 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~--------~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~ 144 (462)
T 1ibr_B 77 QQRWLAIDANARREVKNYVLQTLGTETY--------RP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTE 144 (462)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCS--------SS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhCCCCc--------hh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCH
Confidence 00111233456777766554 55 678888888886421110 1135778899999888 89
Q ss_pred HHHHHHHHHHHHhccCC-hhcHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCcchH-HHHHHcCChHHHH
Q 004992 222 KVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVI 297 (720)
Q Consensus 222 ~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~nL~~~~~~~~-~~~~~~~~l~~L~ 297 (720)
.++..++.+|..++... +....... ..+++.+...+.++ ++.+|..+++++.++...-.... ......-+++.+.
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 223 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999998632 22111111 23678888999888 78999999999999753322110 0001111466667
Q ss_pred HhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhc------Cc----
Q 004992 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT------DM---- 367 (720)
Q Consensus 298 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------~~---- 367 (720)
..+.+.+++++..++.++..++...+......+..++++.++..+++.++.++..++.++..++.... ..
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 303 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 77778889999999999999986544332222222678888888889999999999999999987210 00
Q ss_pred -----chhhhhhh---cCCHHHHHHHhcC-------CChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhh
Q 004992 368 -----HNQAGIAH---NGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 432 (720)
Q Consensus 368 -----~~~~~l~~---~~~i~~l~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~ 432 (720)
.....+.+ ...++.+++.+.. .++.+|..++.+|..++..-.. .
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~------------------- 362 (462)
T 1ibr_B 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D------------------- 362 (462)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--T-------------------
T ss_pred CCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--H-------------------
Confidence 00000111 2234555555532 2456777777777776543211 0
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccc-hhhhccCcHHHHHHhhcCCCchhhhh
Q 004992 433 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR-TIFIDGGGLELLLGLLGSTNPKQQLD 511 (720)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~ 511 (720)
.-..+++.+...+.++++.+|..|+.+|+.++.+.... ..-.-...+|.|..++.++++.||..
T Consensus 363 ---------------~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~ 427 (462)
T 1ibr_B 363 ---------------IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 427 (462)
T ss_dssp ---------------HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 11235667777788899999999999999999765411 11122567899999999999999999
Q ss_pred HHHHHHHHHhhc
Q 004992 512 GAVALFKLANKA 523 (720)
Q Consensus 512 a~~aL~~L~~~~ 523 (720)
|+++|.+++...
T Consensus 428 a~~~l~~~~~~~ 439 (462)
T 1ibr_B 428 AAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHG
T ss_pred HHHHHHHHHHhc
Confidence 999999999865
No 66
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.56 E-value=6.2e-14 Score=163.88 Aligned_cols=436 Identities=16% Similarity=0.113 Sum_probs=267.7
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhh-HHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEV-VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
++.++..+.+.+...+++..+|..|+.++.+++.. +.. .........++.+..++.+.+. ++|..+
T Consensus 170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~------------~vr~~a 237 (876)
T 1qgr_A 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT------------RVRVAA 237 (876)
T ss_dssp HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH------------HHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH------------HHHHHH
Confidence 34444555554444322466899999999998753 211 1111111246666676655444 899999
Q ss_pred HHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCch-----------------
Q 004992 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS----------------- 198 (720)
Q Consensus 137 ~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~----------------- 198 (720)
+++|..++ ..+..-...+...+++.++..+.+.++ +++..++..+..++.....
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 309 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 309 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccc
Confidence 99999999 444432333333677887777765544 8999999999888853210
Q ss_pred -hhHHH--HhcCCcHHHHHhhc-------CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHH
Q 004992 199 -IKTRV--RMEGGIPPLVELLE-------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268 (720)
Q Consensus 199 -~~~~~--~~~~~i~~L~~ll~-------~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~ 268 (720)
..... .....++.++..+. +.++.+|..+..+|..++....+ .+.. .+++.+...+.+++..+|..
T Consensus 310 ~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~~~~~~~r~~ 385 (876)
T 1qgr_A 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDA 385 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCSSHHHHHH
T ss_pred hhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHH-HHHHHHHHHccCCChHHHHH
Confidence 00000 01234566667764 23578999999999998852221 1222 36777778888999999999
Q ss_pred HHHHHHHhhcCCc-chHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchh-hHHHhcCChHHHHHHhcCCC
Q 004992 269 AVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPD 346 (720)
Q Consensus 269 a~~~L~nL~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll~~~~ 346 (720)
+++++++++.... ..... .-..+++.++..+.+.++.+|..+++++.+++...+... ..-.-..+++.++..+.++
T Consensus 386 a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~- 463 (876)
T 1qgr_A 386 AVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE- 463 (876)
T ss_dssp HHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-
Confidence 9999999986543 22122 224578999999999999999999999999986433211 0011134678888888775
Q ss_pred HHHHHHHHHHHHHHhhhhcC------c-------chhhhhhhcCCHHHHHHHhcCC---ChhHHHHHHHHHHhcccCCC-
Q 004992 347 VQLREMSAFALGRLAQVITD------M-------HNQAGIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNED- 409 (720)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~~~------~-------~~~~~l~~~~~i~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~- 409 (720)
+.++..++++|.+++...+. + .....+ ..+++.+...+... +..++..+..++..++....
T Consensus 464 ~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 464 PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 89999999999999983220 0 011111 23566677777553 45788888888888865322
Q ss_pred chhHHHhhcccccccchhhhh----------------hhhHHHHHHHHHHHHHh--------hhhhhHHHHHHHHHhcc-
Q 004992 410 NVADFIRVGGVQKLQDGEFIV----------------QATKDCVAKTLKRLEEK--------IHGRVLNHLLYLMRVAE- 464 (720)
Q Consensus 410 ~~~~l~~~~~v~~L~~~~~~~----------------~~~~~~~~~~~~~l~~~--------~~~~~~~~L~~ll~~~~- 464 (720)
....+. ...++.+....... ......+...+..+... .-..+++.++.++++..
T Consensus 542 ~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 620 (876)
T 1qgr_A 542 DCYPAV-QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG 620 (876)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC
Confidence 221111 11222222111000 01111222222222111 23457778888877764
Q ss_pred -hhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCC-CchhhhhHHHHHHHHHhhc
Q 004992 465 -KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 465 -~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~L~~~~ 523 (720)
+.++..++.++..++..........-...++.|...+.+. +++++..|..++..++...
T Consensus 621 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 681 (876)
T 1qgr_A 621 SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL 681 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH
Confidence 4789999999999976433221112234678888888886 7889999999999998754
No 67
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.56 E-value=4.2e-13 Score=133.61 Aligned_cols=230 Identities=15% Similarity=0.077 Sum_probs=178.0
Q ss_pred HhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 004992 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (720)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~ 283 (720)
...+.++.|+..|.++++.++..|+++|..+.. .+.++.|+.++.++++.+|..++++|+++.......
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 345688999999999999999999999999872 236889999999999999999999999995332211
Q ss_pred HHHHHHcCChHHHH-HhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 284 KKEVLAAGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 284 ~~~~~~~~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
. .+++.+. .++.+.++.+|..++++|.++...++... ...++.|+.++.++++.+|..|+.+|+++..
T Consensus 89 -~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 -D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp -H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred -h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 1 1334444 24567889999999999999975332221 2357899999999999999999999987765
Q ss_pred hhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHH
Q 004992 363 VITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 442 (720)
Q Consensus 363 ~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~ 442 (720)
...++.|+.++.++++.+|..++++|..+....+
T Consensus 158 -------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------------------------------- 191 (280)
T 1oyz_A 158 -------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------------------------------- 191 (280)
T ss_dssp --------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------------------------------
T ss_pred -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------------------------------
Confidence 2478999999999999999999999998853211
Q ss_pred HHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHh
Q 004992 443 RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 443 ~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~ 521 (720)
..++.|+.+++++++.+|..|+.+|+++. ....++.|..++.++ +++..|+.+|..+..
T Consensus 192 --------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 192 --------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD 250 (280)
T ss_dssp --------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCc
Confidence 24566777888888888888888888875 234678888888764 388888888887753
No 68
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.55 E-value=6.9e-13 Score=132.05 Aligned_cols=253 Identities=17% Similarity=0.092 Sum_probs=192.5
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (720)
++.+++.|.+. ++.+|..|++.|.++.. .++++.|+.++.+++. .+|..|++
T Consensus 25 i~~L~~~L~~~------~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~------------~vR~~A~~ 76 (280)
T 1oyz_A 25 DDELFRLLDDH------NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNY------------IRRDIGAF 76 (280)
T ss_dssp HHHHHHHTTCS------SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSH------------HHHHHHHH
T ss_pred HHHHHHHHHcC------CHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCH------------HHHHHHHH
Confidence 56666666543 66789999999998762 2357889999988766 89999999
Q ss_pred HHHHhccChhhHHHHHHcCChHHHHH-HHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc
Q 004992 139 ALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (720)
Q Consensus 139 ~L~~L~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (720)
+|+.+...+..... .++.+.. ++.+.+. .++..++++|.++...++.... ..++.|...+.
T Consensus 77 aL~~l~~~~~~~~~-----l~~~L~~~~~~d~~~--------~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~ 138 (280)
T 1oyz_A 77 ILGQIKICKKCEDN-----VFNILNNMALNDKSA--------CVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAF 138 (280)
T ss_dssp HHHHSCCCTTTHHH-----HHHHHHHHHHHCSCH--------HHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTT
T ss_pred HHHHhccccccchH-----HHHHHHHHHhcCCCH--------HHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhh
Confidence 99999843322111 2333432 2344433 8999999999999864443222 35688999999
Q ss_pred CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHH
Q 004992 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (720)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~ 297 (720)
++++.+|..++.+|+++.. .+.++.|+.++.++++.||..++++|+++....+ ..++.|.
T Consensus 139 d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~ 198 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFV 198 (280)
T ss_dssp CSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHH
Confidence 9999999999999998873 3489999999999999999999999999853322 2467889
Q ss_pred HhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcC
Q 004992 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNG 377 (720)
Q Consensus 298 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~ 377 (720)
.++.+.++.+|..++++|.++. ....++.|+..+.+++ ++..++.+|+.+.. ..
T Consensus 199 ~~l~d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------------~~ 252 (280)
T 1oyz_A 199 EMLQDKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD-------------KT 252 (280)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------------GG
T ss_pred HHhcCCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------------hh
Confidence 9999999999999999999985 1346889999998754 88999999988754 24
Q ss_pred CHHHHHHHhc-CCChhHHHHHHHHHHh
Q 004992 378 GLVPLLKLLD-SKNGSLQHNAAFALYG 403 (720)
Q Consensus 378 ~i~~l~~ll~-~~~~~v~~~a~~~L~~ 403 (720)
.++.|.+++. ++++.++..+..+|.+
T Consensus 253 ~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 253 LLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp GHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred hhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 6888999885 4677888888877754
No 69
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.55 E-value=5.4e-13 Score=155.56 Aligned_cols=418 Identities=14% Similarity=0.094 Sum_probs=264.4
Q ss_pred hHHHHHHHHHHHHHHccC-hhh-HHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHH
Q 004992 76 DRAAAKRATHVLAELAKN-EEV-VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~~-~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~ 152 (720)
+..+|..|+.++.++... ... .........++.|...+.+.++ ++|..++.+|..++ ..+..-..
T Consensus 194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~------------~~r~~a~~~l~~l~~~~~~~~~~ 261 (861)
T 2bpt_A 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI------------EVQAAAFGCLCKIMSKYYTFMKP 261 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH------------HHHHHHHHHHHHHHHHHGGGCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999987542 111 0000011245666677766655 89999999999999 33332112
Q ss_pred HHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCch-----------------hhHHHHhcCCcHHHHHh
Q 004992 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-----------------IKTRVRMEGGIPPLVEL 215 (720)
Q Consensus 153 ~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-----------------~~~~~~~~~~i~~L~~l 215 (720)
.....+++.+...+.+.++ +++..++..+..++..... .-.. .-...++.++..
T Consensus 262 ~l~~~l~~~~~~~~~~~~~--------~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~~ll~~ 332 (861)
T 2bpt_A 262 YMEQALYALTIATMKSPND--------KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS-SIKDVVPNLLNL 332 (861)
T ss_dssp HHHHTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHH-HHHHHHHHHHHH
Confidence 2222556666666665544 8999999999988863211 0011 113456777777
Q ss_pred hcC-------CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-chHHHH
Q 004992 216 LEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEV 287 (720)
Q Consensus 216 l~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~-~~~~~~ 287 (720)
+.. .++.++..+..+|..++.... ..+.. .+++.+...+.+.+..+|..++.+++.++.... ......
T Consensus 333 l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~ 408 (861)
T 2bpt_A 333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY 408 (861)
T ss_dssp TTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred HHhcccccccccCcHHHHHHHHHHHHHHHcc---HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 764 236899999999999985221 11122 256777778888899999999999999986532 211222
Q ss_pred HHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchh-hHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcC
Q 004992 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITD 366 (720)
Q Consensus 288 ~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (720)
. ..+++.++..+.+.++.+|..++++++.++....... ..-.-..+++.++..+.++ +.++..|+++|.+++...+.
T Consensus 409 l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~ 486 (861)
T 2bpt_A 409 V-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAE 486 (861)
T ss_dssp H-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSS
T ss_pred H-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhccc
Confidence 2 3578889999999999999999999999985321110 0011234678888888776 99999999999999983321
Q ss_pred ---cchhhhhhhcCCHHHHHHHhcCC--ChhHHHHHHHHHHhcccCCC-chhHHHhhcccccccchhhh-----------
Q 004992 367 ---MHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNED-NVADFIRVGGVQKLQDGEFI----------- 429 (720)
Q Consensus 367 ---~~~~~~l~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~v~~L~~~~~~----------- 429 (720)
......+ ..+++.+++++.+. ++.++..++.++..++.... .....+. ..++.+.+....
T Consensus 487 ~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~ 563 (861)
T 2bpt_A 487 ATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTL 563 (861)
T ss_dssp SSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCH
T ss_pred ccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCCh
Confidence 1111111 23567777888643 47899999999999965322 2222211 122222221110
Q ss_pred -----hhhhHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHhcch-hHHHHHHHHHHhhcCCcccchhhhccCcHHH
Q 004992 430 -----VQATKDCVAKTLKRLEEKI-------HGRVLNHLLYLMRVAEK-GVQRRVALALAHLCSPDDQRTIFIDGGGLEL 496 (720)
Q Consensus 430 -----~~~~~~~~~~~~~~l~~~~-------~~~~~~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 496 (720)
.......+...+..+.... ...+++.++..+++.++ .++..+..++..++..........-...+|.
T Consensus 564 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ 643 (861)
T 2bpt_A 564 EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY 643 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 0011111222232222221 33577778888888777 8999999999998765432222223357888
Q ss_pred HHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 497 LLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 497 L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
|...+++++++++..+..++..+++..
T Consensus 644 l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 644 LLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 999888888999999999999998754
No 70
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.55 E-value=5.3e-14 Score=164.13 Aligned_cols=430 Identities=11% Similarity=0.079 Sum_probs=266.0
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHccCh--hhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a 136 (720)
++.+++.+.+.+... +...|..|+.+++.++.+. +....... .+++.++..+.+++. .+|..+
T Consensus 367 ~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~------------~vr~~a 431 (861)
T 2bpt_A 367 LEPVLEFVEQNITAD--NWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSL------------QVKETT 431 (861)
T ss_dssp HHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCH------------HHHHHH
T ss_pred HHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcH------------HHHHHH
Confidence 344555555544433 5568999999999999752 32222222 478888888887766 899999
Q ss_pred HHHHHHhccC--hhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCc-----hhhHHHHhcCCc
Q 004992 137 AFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKTRVRMEGGI 209 (720)
Q Consensus 137 ~~~L~~L~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~~~i 209 (720)
++++++++.. +.....-.-..+++.++..+.+. . .++..++++|.+++.... .....+ ..++
T Consensus 432 ~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~--------~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il 500 (861)
T 2bpt_A 432 AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-P--------KVATNCSWTIINLVEQLAEATPSPIYNFY--PALV 500 (861)
T ss_dssp HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-H--------HHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHH
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-h--------HHHHHHHHHHHHHHHhcccccchhhHHHH--HHHH
Confidence 9999999921 11000001123467777777653 2 899999999999986421 111111 2456
Q ss_pred HHHHHhhcCCC--HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC---------------CHHHHHHHHHH
Q 004992 210 PPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE---------------DSAIHYEAVGV 272 (720)
Q Consensus 210 ~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~---------------~~~v~~~a~~~ 272 (720)
+.|+..+.+.+ +.++..++.++..++...+........ .++|.++..+.+. ...++..++.+
T Consensus 501 ~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 579 (861)
T 2bpt_A 501 DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTV 579 (861)
T ss_dssp HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHH
Confidence 77788887543 789999999999998644433322332 2567777666521 34678889999
Q ss_pred HHHhhcCCcchHHHHHHcCChHHHHHhhccCCh-HHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHH
Q 004992 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351 (720)
Q Consensus 273 L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 351 (720)
|.+++...+...... ...+++.++..+++.++ .++..++.++..++........... ..++|.++..+.+.++.++.
T Consensus 580 l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~ 657 (861)
T 2bpt_A 580 LAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSI 657 (861)
T ss_dssp HHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHhhhhhHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHH
Confidence 999975443311111 12467778888888777 8999999999998853322222222 24788899999888889999
Q ss_pred HHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCC--hhHHHHHHHHHHhcccC-CCchhHHHhhcccccccchhh
Q 004992 352 MSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEF 428 (720)
Q Consensus 352 ~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~--~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~v~~L~~~~~ 428 (720)
.++.++..++...+ ..... .-...++.+.+.+.+.+ +.++..++.++..++.. .+....+. ...++.+.....
T Consensus 658 ~a~~~l~~l~~~~~-~~~~~--~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l-~~~l~~l~~~~~ 733 (861)
T 2bpt_A 658 TAVGFIADISNSLE-EDFRR--YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL-NDIMALCVAAQN 733 (861)
T ss_dssp HHHHHHHHHHHHTG-GGGHH--HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc-hhccc--hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHh
Confidence 99999999998432 11111 12345677777777654 88999999999998753 22222211 122222222100
Q ss_pred ------------hhhhhHHHHHHHHHHHHHh----------hhhhhHHHHHHHHHhc----chhHHHHHHHHHHhhcCCc
Q 004992 429 ------------IVQATKDCVAKTLKRLEEK----------IHGRVLNHLLYLMRVA----EKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 429 ------------~~~~~~~~~~~~~~~l~~~----------~~~~~~~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~ 482 (720)
.....+......+..+... +-..+++.+...+.+. +..+|..|+.+|+.|+..-
T Consensus 734 ~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 734 TKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHc
Confidence 0011122222222222111 1233445555555553 7899999999999997532
Q ss_pred -ccc-hhhhccCcHHHHHHhhc---CCCchhhhhHHHHHHHHHh
Q 004992 483 -DQR-TIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 483 -~~~-~~~~~~~~~~~L~~ll~---~~~~~v~~~a~~aL~~L~~ 521 (720)
... ..+.....++.|++.+. +.+..++..|.+++..+.+
T Consensus 814 ~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 814 PDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp TTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 211 12223356888887766 4666799999999988875
No 71
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.54 E-value=2.4e-13 Score=150.05 Aligned_cols=355 Identities=17% Similarity=0.127 Sum_probs=253.4
Q ss_pred hHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
+..++..+.-.+..++. +++.. .-+++.+.+-|.+++. .+|..|+.+|+++. .++....
T Consensus 62 ~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~------------~ir~~AL~~L~~i~-~~~~~~~-- 121 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNP------------LIRALAVRTMGCIR-VDKITEY-- 121 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSH------------HHHHHHHHHHHTCC-SGGGHHH--
T ss_pred CHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCH------------HHHHHHHHHHHcCC-hHHHHHH--
Confidence 56677777777777766 34432 1246677777777666 89999999999987 3444333
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (720)
.++.+..++.+.++ .|+..|+.++.+++..+++.- ...++++.+..+|.++++.|+..|+.+|..+
T Consensus 122 ---l~~~l~~~L~d~~~--------~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 122 ---LCEPLRKCLKDEDP--------YVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp ---HHHHHHHHSSCSCH--------HHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCh--------HHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 35778888887665 999999999999998665432 2346789999999999999999999999999
Q ss_pred ccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHH
Q 004992 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (720)
Q Consensus 235 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (720)
+..++.........+.++.|+..+.+.++..+..++.++..++..++.. ...+++.+..++++.++.++.+|+++
T Consensus 188 ~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~-----~~~~l~~l~~~l~~~~~~V~~ea~~~ 262 (591)
T 2vgl_B 188 SESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE-----AQSICERVTPRLSHANSAVVLSAVKV 262 (591)
T ss_dssp TTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH-----HHHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred HhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH-----HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 9754432100011124667777777888989988899888886443322 23467888888999999999999999
Q ss_pred HHHHhcc---CcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCCh
Q 004992 315 LGQFAAT---DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNG 391 (720)
Q Consensus 315 L~~l~~~---~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~ 391 (720)
+..+... +++....+ -.++.+.|+.++ ++++.+|..|+.+|..++.. .++. ... .+..+. .+.+++.
T Consensus 263 i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~--~p~~----~~~-~~~~~~-~~~~d~~ 332 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNML-LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQK--RPEI----LKQ-EIKVFF-VKYNDPI 332 (591)
T ss_dssp HHHSCCSCCBTTBSHHHH-HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHH--CCST----TTT-CTTTTS-CCTTSCH
T ss_pred HHHHhhccCCCHHHHHHH-HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHh--ChHH----HHH-HHHhhe-eccCChH
Confidence 9998642 22322222 234567777665 47899999999999999982 2221 111 111222 2224448
Q ss_pred hHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHH
Q 004992 392 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV 471 (720)
Q Consensus 392 ~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a 471 (720)
.++..++.+|.+++.. .+.. .+++.|..++.+.++++|..+
T Consensus 333 ~Ir~~al~~L~~l~~~-~nv~--------------------------------------~iv~~L~~~l~~~d~~~r~~~ 373 (591)
T 2vgl_B 333 YVKLEKLDIMIRLASQ-ANIA--------------------------------------QVLAELKEYATEVDVDFVRKA 373 (591)
T ss_dssp HHHHHHHHHHHHTCCS-STHH--------------------------------------HHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCh-hhHH--------------------------------------HHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999853 3322 245567778888899999999
Q ss_pred HHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 472 ALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 472 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
+++++.++..... .....++.|..++.+.+..++..+..++.++...
T Consensus 374 v~aI~~la~~~~~----~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 374 VRAIGRCAIKVEQ----SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp HHHHHHHHTTCHH----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh----HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 9999999876431 1234688999999998888888888888888765
No 72
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.53 E-value=3.3e-13 Score=148.95 Aligned_cols=398 Identities=16% Similarity=0.117 Sum_probs=262.9
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHH
Q 004992 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (720)
Q Consensus 62 ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (720)
++..+.+++.+ +|+.+|..|+.+++++. .++.... .++.+..++.++++ .||..|+.++.
T Consensus 87 ~~n~l~kdL~~--~n~~ir~~AL~~L~~i~-~~~~~~~-----l~~~l~~~L~d~~~------------~VRk~A~~al~ 146 (591)
T 2vgl_B 87 AVNSFVKDCED--PNPLIRALAVRTMGCIR-VDKITEY-----LCEPLRKCLKDEDP------------YVRKTAAVCVA 146 (591)
T ss_dssp THHHHGGGSSS--SSHHHHHHHHHHHHTCC-SGGGHHH-----HHHHHHHHSSCSCH------------HHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCHHHHHHHHHHHHcCC-hHHHHHH-----HHHHHHHHcCCCCh------------HHHHHHHHHHH
Confidence 34556666554 47778999999999876 3443333 35778899987766 99999999999
Q ss_pred Hhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCC
Q 004992 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (720)
Q Consensus 142 ~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (720)
+++ .+|+... ..++++.+..+|.+.+. .++..|+.+|..++..++.........+.+..|+..+.+.+
T Consensus 147 ~i~~~~p~~~~---~~~~~~~l~~lL~d~d~--------~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~ 215 (591)
T 2vgl_B 147 KLHDINAQMVE---DQGFLDSLRDLIADSNP--------MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT 215 (591)
T ss_dssp HHHHSSCCCHH---HHHHHHHHHHTTSCSCH--------HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC
T ss_pred HHHhhChhhcc---cccHHHHHHHHhCCCCh--------hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC
Confidence 999 5666432 24678999999987665 99999999999999865532100011123566777777788
Q ss_pred HHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---CcchHHHHHHcCChHHHH
Q 004992 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---SPNIKKEVLAAGALQPVI 297 (720)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~---~~~~~~~~~~~~~l~~L~ 297 (720)
+-.+...+.++..++..++... ..+++.+..++++.++.|+..|++++..+... +++..+. +...+.+.|+
T Consensus 216 ~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~-~~~~~~~~L~ 289 (591)
T 2vgl_B 216 EWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNM-LLKKLAPPLV 289 (591)
T ss_dssp HHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH-HHHHTHHHHH
T ss_pred chHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHH
Confidence 8888899999988885333221 23577888889999999999999999999632 3333333 2345667777
Q ss_pred HhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcC
Q 004992 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNG 377 (720)
Q Consensus 298 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~ 377 (720)
.++. +++.+|..++.+|..+....+..... .+..+. .+.+++..+|..++..|.+++. .. +.. .
T Consensus 290 ~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~al~~L~~l~~---~~-nv~-----~ 353 (591)
T 2vgl_B 290 TLLS-GEPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLEKLDIMIRLAS---QA-NIA-----Q 353 (591)
T ss_dssp HHTT-SCHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHHHHHHHHHTCC---SS-THH-----H
T ss_pred HHhc-CCccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHHHHHHHHHHCC---hh-hHH-----H
Confidence 6664 78999999999999998654433221 112222 2224458999999999999876 22 221 2
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhh--hhhhHHHHHHHHHHHHHh---hhhhh
Q 004992 378 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI--VQATKDCVAKTLKRLEEK---IHGRV 452 (720)
Q Consensus 378 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~--~~~~~~~~~~~~~~l~~~---~~~~~ 452 (720)
+++.|...+.+.+..++..++++|.+++..-... ....++.|.+.... .....+.+ ..+..+-.. ....+
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~----~~~~v~~Ll~ll~~~~~~v~~e~i-~~l~~ii~~~p~~~~~~ 428 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS----AERCVSTLLDLIQTKVNYVVQEAI-VVIRDIFRKYPNKYESI 428 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHTCCHHHHHHHH-HHHHHHHHHSCSSCCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH----HHHHHHHHHHHHcccchHHHHHHH-HHHHHHHHHCcchHHHH
Confidence 4666778888889999999999999998643211 11222333221110 01111111 122222111 13457
Q ss_pred HHHHHHHHHh-cchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 453 LNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 453 ~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
+..|...+.+ .++.++..++|+|+..+....+. ...++.+.+-+.+.++.+|..+..++..+...
T Consensus 429 v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~-----~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~ 494 (591)
T 2vgl_B 429 IATLCENLDSLDEPDARAAMIWIVGEYAERIDNA-----DELLESFLEGFHDESTQVQLTLLTAIVKLFLK 494 (591)
T ss_dssp HHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH-----HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcccccccCH-----HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 7888887764 57889999999999997664321 12233444434456778999999999999864
No 73
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.51 E-value=3e-12 Score=149.52 Aligned_cols=402 Identities=12% Similarity=0.069 Sum_probs=264.1
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc-ChhhH-----HHHHh------CCChHHHHHhhcCCCCccccc
Q 004992 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVV-----NWIVE------GGAVPALVKHLQAPPTSEADR 123 (720)
Q Consensus 56 ~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~-~~~~~-----~~~~~------~g~i~~L~~ll~~~~~~~~~~ 123 (720)
......+++.+... +.+..+|..|+..|.+... ....+ ..... ..+-+.++..+.+.+.
T Consensus 34 ~~~~~~L~~~l~~~----~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~----- 104 (876)
T 1qgr_A 34 PTFLVELSRVLANP----GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY----- 104 (876)
T ss_dssp HHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-----
T ss_pred hhHHHHHHHHHhCC----CCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcH-----
Confidence 33444455555442 3356689999999999654 21110 00000 1122347777776655
Q ss_pred CCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhcc--CCCccchhhhHHHHHHHHHHHHhhhcCchhhH
Q 004992 124 NLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (720)
Q Consensus 124 ~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 201 (720)
.+ ..++.+++.++...... -.....++.++..+.+. +. .++..++.+|..++........
T Consensus 105 -------~~-~~~~~~l~~i~~~~~~~--~~w~~ll~~l~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~ 166 (876)
T 1qgr_A 105 -------RP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQL 166 (876)
T ss_dssp -------SS-CHHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCHHHH
T ss_pred -------HH-HHHHHHHHHHHHhhCcc--cccHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhcCHhhH
Confidence 56 78899999888221000 01245788888888776 33 8899999999999864321100
Q ss_pred HHHhcCCcHHHHHhhcCC--CHHHHHHHHHHHHHhccCChhcH-HHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 004992 202 RVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~-~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~ 278 (720)
.-.....++.+...+.++ +..+|..++.++..++..-..+. .......+++.+...+.+++.++|..++.++..+..
T Consensus 167 ~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 167 QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 001123556677778776 68999999999999875222110 001111257777888888899999999999999986
Q ss_pred CCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcc------------------hhhHH--HhcCChHHH
Q 004992 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD------------------CKVHI--VQRGAVRPL 338 (720)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------------~~~~~--~~~~~~~~L 338 (720)
..+......+...+++.++..+.+.++.++..++..+.+++..... ..... .-..+++.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 326 (876)
T 1qgr_A 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (876)
T ss_dssp HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHH
Confidence 5554333334447888888888888899999999999888742100 00000 013456777
Q ss_pred HHHhc-------CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCch
Q 004992 339 IEMLQ-------SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 411 (720)
Q Consensus 339 ~~ll~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 411 (720)
+..+. +.++.+|..|..+|..++...+ ..+. ..+++.+...+.++++.+|..+++++..++.....
T Consensus 327 l~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-----~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~- 399 (876)
T 1qgr_A 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-----DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP- 399 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-----GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH-
T ss_pred HHHhhcccccccccccHHHHHHHHHHHHHHHHCc-----HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH-
Confidence 77775 2456899999999999998332 1222 24566677778889999999999999999864321
Q ss_pred hHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccc--hhhh
Q 004992 412 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR--TIFI 489 (720)
Q Consensus 412 ~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~ 489 (720)
..+. .....+++.++..+.++++.+|..|+++|.+++...... ..-.
T Consensus 400 -~~~~------------------------------~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 400 -SQLK------------------------------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp -HHHH------------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred -HHHH------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 0000 012347888999999999999999999999997653321 0111
Q ss_pred ccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 490 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 490 ~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
-...++.|...+.++ +.++..|++++.+++...
T Consensus 449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 235678888888775 889999999999999764
No 74
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.45 E-value=1.3e-12 Score=140.59 Aligned_cols=357 Identities=11% Similarity=0.074 Sum_probs=237.4
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccCh--hhHHH----H------HhCCChHHHHHhhcCCCCcccccCC
Q 004992 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNW----I------VEGGAVPALVKHLQAPPTSEADRNL 125 (720)
Q Consensus 58 ~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~--~~~~~----~------~~~g~i~~L~~ll~~~~~~~~~~~~ 125 (720)
....++..+... +.+..+|..|+..|.++.... ..... . ....+-..|+..+.+.+.
T Consensus 36 ~~~~L~~il~~~----~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~------- 104 (462)
T 1ibr_B 36 FLVELSRVLANP----GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY------- 104 (462)
T ss_dssp HHHHHHHHHHCT----TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS-------
T ss_pred HHHHHHHHHHcC----CCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc-------
Confidence 344455555542 335668999999999986521 00000 0 011133456777777665
Q ss_pred CcchHHHHHHHHHHHHHhcc--ChhhHHHHHHcCChHHHHHHHhcc--CCCccchhhhHHHHHHHHHHHHhhhcC-chhh
Q 004992 126 KPFEHEVEKGSAFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHEN-SSIK 200 (720)
Q Consensus 126 ~~~~~~v~~~a~~~L~~L~~--~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~ 200 (720)
.+ ..++.+++.++. .|.. ...+.++.++..+.+. +. .++..++.+|..++... +..-
T Consensus 105 -----~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 105 -----RP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp -----SS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCGGGT
T ss_pred -----hh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCH--------HHHHHHHHHHHHHHHhCCchhh
Confidence 67 789999999982 2321 1246789999999876 33 88999999999999743 2111
Q ss_pred HHHHhcCCcHHHHHhhcCC--CHHHHHHHHHHHHHhccCChhcHH-HHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 004992 201 TRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 201 ~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~ 277 (720)
.. ....+++.+...+.++ ++.+|..++.++.++...-..... .....-+++.+...+.+++++++..++.++..++
T Consensus 167 ~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 167 QD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp GG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 11 1123667888888887 799999999999987642111110 0011114667777788889999999999999998
Q ss_pred cCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCc-----------------chhhHHHh---cCChHH
Q 004992 278 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-----------------DCKVHIVQ---RGAVRP 337 (720)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-----------------~~~~~~~~---~~~~~~ 337 (720)
...+..-...+..++++.++..+.+.+++++..++..+..++.... .....+.+ ..++|.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 6544321111112667788888888899999999999998875310 00001111 345677
Q ss_pred HHHHhcC-------CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCc
Q 004992 338 LIEMLQS-------PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 410 (720)
Q Consensus 338 L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (720)
++..+.+ .++.+|..|..+|..++...+ ..+. ..+++.+...+.++++.+|..++.+|+.++.....
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-----~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~ 399 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-----DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-----TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-----HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH
Confidence 7777743 345799999999999998332 1222 34667777888899999999999999999864321
Q ss_pred hhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCc
Q 004992 411 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 411 ~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 482 (720)
. .+. ..-..+++.++..+.++++.||..|+++|++++...
T Consensus 400 ~-------~~~-------------------------~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 400 S-------QLK-------------------------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp T-------TTC-------------------------TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred H-------HHH-------------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 0 000 011347888999999999999999999999998654
No 75
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.44 E-value=9.3e-11 Score=129.77 Aligned_cols=348 Identities=14% Similarity=0.146 Sum_probs=254.5
Q ss_pred hHHHHHHHHHHHHHHcc-ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
+...+..+.-.+..++. +++.... ++..|.+-|.+++. .+|..|+++|+++.. ++..
T Consensus 83 ~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~------------~vr~lAL~~L~~i~~-~~~~---- 140 (618)
T 1w63_A 83 KFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQ------------FVQGLALCTLGCMGS-SEMC---- 140 (618)
T ss_dssp SHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSS------------HHHHHHHHHHHHHCC-HHHH----
T ss_pred chHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCH------------hHHHHHHHHHHhcCC-HHHH----
Confidence 34445555556666665 3442222 45677778888777 899999999999983 3332
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (720)
...++.+..+|.+.++ .++..|+.++.++...+++.. .++++.+..++.+.++.|+..|+.+|..+
T Consensus 141 -~~l~~~l~~~L~~~~~--------~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 141 -RDLAGEVEKLLKTSNS--------YLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEM 206 (618)
T ss_dssp -HHHHHHHHHHHHSCCH--------HHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHH
Confidence 3457888999988766 999999999999998776533 26788889999999999999999999999
Q ss_pred ccCChhcHHHHHhCCCHHHHHHhhcC---------------CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHh
Q 004992 235 AFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (720)
Q Consensus 235 ~~~~~~~~~~i~~~g~l~~L~~ll~~---------------~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~l 299 (720)
+..+++....+. ..+|.++.+|.+ .++..+..++.+|..++..++... ...++.|..+
T Consensus 207 ~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l 279 (618)
T 1w63_A 207 CERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQV 279 (618)
T ss_dssp CCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHH
T ss_pred HHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHH
Confidence 974444322332 478888887753 478889999999999986655432 3455666666
Q ss_pred hcc------CChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhh
Q 004992 300 LSS------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGI 373 (720)
Q Consensus 300 l~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l 373 (720)
+.. .+..+..+|+.++..+.. .+. +. ..+++.|..++.+.++.+|..|+.+|..++.. . ...
T Consensus 280 ~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~-----~-p~~ 347 (618)
T 1w63_A 280 ATNTETSKNVGNAILYETVLTIMDIKS-ESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQT-----D-HNA 347 (618)
T ss_dssp HHTSCCSSTHHHHHHHHHHHHHHHSCC-CHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH-----H-HHH
T ss_pred HhccccccchHHHHHHHHHHHHHhcCC-CHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh-----C-HHH
Confidence 542 235788899999988743 221 11 13567888889999999999999999999982 1 112
Q ss_pred hhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhH
Q 004992 374 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 453 (720)
Q Consensus 374 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 453 (720)
+ ......++.++.+++..++..++.+|..++... +.. .++
T Consensus 348 ~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~-nv~--------------------------------------~iv 387 (618)
T 1w63_A 348 V-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN-NIR--------------------------------------GMM 387 (618)
T ss_dssp H-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS-STH--------------------------------------HHH
T ss_pred H-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc-cHH--------------------------------------HHH
Confidence 2 224567888999999999999999999998643 222 245
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 454 NHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 454 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
..|+..+.+.++++|..++.+++.++....... ...++.|++++++.+..++..+...+..+...
T Consensus 388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~----~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~ 452 (618)
T 1w63_A 388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSK----RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN 452 (618)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH----HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 567788888999999999999999987532111 12378888999887777888888888888765
No 76
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.43 E-value=1.4e-11 Score=136.26 Aligned_cols=397 Identities=17% Similarity=0.140 Sum_probs=209.9
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHH
Q 004992 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (720)
Q Consensus 62 ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (720)
.+..|.+++.++ ++.++..|+++|+++.. ++... ..++.+..++.+.+. .||..|+.++.
T Consensus 108 ~in~l~kDL~~~--n~~vr~lAL~~L~~i~~-~~~~~-----~l~~~l~~~L~~~~~------------~VRk~A~~al~ 167 (618)
T 1w63_A 108 MTNCIKNDLNHS--TQFVQGLALCTLGCMGS-SEMCR-----DLAGEVEKLLKTSNS------------YLRKKAALCAV 167 (618)
T ss_dssp HHHHHHHHHSCS--SSHHHHHHHHHHHHHCC-HHHHH-----HHHHHHHHHHHSCCH------------HHHHHHHHHHH
T ss_pred HHHHHHHhcCCC--CHhHHHHHHHHHHhcCC-HHHHH-----HHHHHHHHHHcCCCH------------HHHHHHHHHHH
Confidence 445555555443 66689999999999884 33222 356888899988776 99999999999
Q ss_pred Hhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC--
Q 004992 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-- 218 (720)
Q Consensus 142 ~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-- 218 (720)
++. .+|+.. .++++.+..+|.+.+. .++..|+.+|..++..++.....+ ...++.++.+|.+
T Consensus 168 ~l~~~~p~~v-----~~~~~~l~~lL~D~d~--------~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~ 232 (618)
T 1w63_A 168 HVIRKVPELM-----EMFLPATKNLLNEKNH--------GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLI 232 (618)
T ss_dssp HHHHHCGGGG-----GGGGGGTTTSTTCCCH--------HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHH
T ss_pred HHHHHChHHH-----HHHHHHHHHHhCCCCH--------hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHH
Confidence 999 667643 2577888888877665 899999999999987544322222 2567777776642
Q ss_pred -------------CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc------CCCHHHHHHHHHHHHHhhcC
Q 004992 219 -------------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNLVHS 279 (720)
Q Consensus 219 -------------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~------~~~~~v~~~a~~~L~nL~~~ 279 (720)
.++-.+...+.+|..++..++.... ..++.|..++. +.+..+...|++++..+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~- 306 (618)
T 1w63_A 233 MSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS- 306 (618)
T ss_dssp HSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-
T ss_pred cCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-
Confidence 4677778888888888864433211 12333333322 1123455555555555421
Q ss_pred CcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 004992 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (720)
Q Consensus 280 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 359 (720)
.+... ..++..|..++.+.++.+|..++.+|..++...+. .+. ...+.++.++.+++..+|..|+.+|..
T Consensus 307 ~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~ 376 (618)
T 1w63_A 307 ESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKDLDVSIKRRAMELSFA 376 (618)
T ss_dssp CHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred CHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 11111 12334444445545555555555555555432111 111 123444445555555555555555555
Q ss_pred HhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC-CCchhHHH-------hhcc------------
Q 004992 360 LAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFI-------RVGG------------ 419 (720)
Q Consensus 360 l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~-------~~~~------------ 419 (720)
++. . .+-.. ++..+...+.+.+.+++..+..+|..++.. ++.....+ ..++
T Consensus 377 l~~---~-~nv~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~ 447 (618)
T 1w63_A 377 LVN---G-NNIRG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLI 447 (618)
T ss_dssp HCC---S-SSTHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHH
T ss_pred Hcc---c-ccHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 543 1 11111 124444444444455555555555555432 11111111 0000
Q ss_pred -------------cccccchhhh---hhhhHHHHHHHHHHHHHhh--------------hhhhHHHHHHHHH--hcchhH
Q 004992 420 -------------VQKLQDGEFI---VQATKDCVAKTLKRLEEKI--------------HGRVLNHLLYLMR--VAEKGV 467 (720)
Q Consensus 420 -------------v~~L~~~~~~---~~~~~~~~~~~~~~l~~~~--------------~~~~~~~L~~ll~--~~~~~v 467 (720)
+..|...... .......+.-.+......+ ...+++.|..+++ ..++.+
T Consensus 448 ~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 527 (618)
T 1w63_A 448 QLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVT 527 (618)
T ss_dssp HHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHH
T ss_pred HHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHH
Confidence 0000000000 0000000001111111111 1124455555554 468899
Q ss_pred HHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 468 QRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 468 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
|..++.++..+........ .-....|.....+.++++|.+|...+.-+..+
T Consensus 528 r~~~lta~~Kl~~~~~~~~----~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~ 578 (618)
T 1w63_A 528 RGYALTAIMKLSTRFTCTV----NRIKKVVSIYGSSIDVELQQRAVEYNALFKKY 578 (618)
T ss_dssp HHHHHHHHHHHHTTCSSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcchH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCc
Confidence 9999999988866533211 11223444556678899999999977776653
No 77
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.42 E-value=7.5e-13 Score=117.31 Aligned_cols=102 Identities=18% Similarity=0.265 Sum_probs=85.7
Q ss_pred EEEEE-CCeEEehhHHHHhhcchhHhhcccC-CcC-CCCCCceecCCCCHHHHHHHHHHHhcCC----------------
Q 004992 555 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG-GYR-EKDARDIEIPNIRWEVFELMMRFIYTGS---------------- 615 (720)
Q Consensus 555 v~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~-~~~-e~~~~~i~l~~~~~~~~~~~l~~~Yt~~---------------- 615 (720)
|++.. +|..|.+|+.+ +..|+||++||.+ ++. |+....|.+++++..+++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 56665 68999999999 8899999999987 676 7777899999999999999999999988
Q ss_pred ----------cccChhhHHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHH
Q 004992 616 ----------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS 657 (720)
Q Consensus 616 ----------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~ 657 (720)
+.++.+++.+|+.+|+++++..|.++|..++...+...++-+
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~ee 133 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE 133 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHH
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH
Confidence 778899999999999999999999999999977664444333
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.41 E-value=3.6e-12 Score=120.90 Aligned_cols=189 Identities=23% Similarity=0.248 Sum_probs=158.4
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhh
Q 004992 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (720)
Q Consensus 248 ~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (720)
.+.++.|+.+|.++++.+|..++..|+.+.. .+.++.|+.++.++++.+|..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4579999999999999999999999998842 2467889999999999999999999999842
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC
Q 004992 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 407 (720)
Q Consensus 328 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (720)
.+.++.|+.++.++++.+|..|+.+|+.+.. ...++.|.+++.++++.++..++.+|.++...
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH
Confidence 2467999999999999999999999998765 24678899999999999999999999998521
Q ss_pred CCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchh
Q 004992 408 EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTI 487 (720)
Q Consensus 408 ~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 487 (720)
..++.|..+++++++.||..++.+|..+..
T Consensus 143 -------------------------------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 172 (211)
T 3ltm_A 143 -------------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG------- 172 (211)
T ss_dssp -------------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------
T ss_pred -------------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence 145678888999999999999999999843
Q ss_pred hhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhcc
Q 004992 488 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 524 (720)
Q Consensus 488 ~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~~ 524 (720)
...++.|..++.++++.||..|..+|.++.....
T Consensus 173 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 173 ---ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ---HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 3468889999999999999999999999887643
No 79
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.41 E-value=8.1e-12 Score=118.45 Aligned_cols=189 Identities=28% Similarity=0.309 Sum_probs=158.9
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHH
Q 004992 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (720)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~ 285 (720)
.+.++.|+..|+++++.+|..++.+|..+.. .+.++.|+.++.++++.+|..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4568999999999999999999999998873 3579999999999999999999999999841
Q ss_pred HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhc
Q 004992 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (720)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (720)
.+.++.|+.++.+.++.+|..++++|..+.. .+.++.|+.++.++++.+|..|+.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 2467889999999999999999999999842 2467999999999999999999999998864
Q ss_pred CcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHH
Q 004992 366 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 445 (720)
Q Consensus 366 ~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~ 445 (720)
...++.|..++.++++.++..++.+|..+..
T Consensus 142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------------------------- 172 (211)
T 3ltm_A 142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------------------------------------- 172 (211)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------------------------------
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------------------------------
Confidence 2468889999999999999999999999842
Q ss_pred HhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc
Q 004992 446 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 483 (720)
Q Consensus 446 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 483 (720)
...++.|..+++++++.||..|..+|.++.....
T Consensus 173 ----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 173 ----ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 1256678888999999999999999999977654
No 80
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.40 E-value=1.3e-10 Score=129.86 Aligned_cols=201 Identities=16% Similarity=0.152 Sum_probs=153.2
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHH-HhhcCCCCcccccCCCcchHHHHHH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALV-KHLQAPPTSEADRNLKPFEHEVEKG 135 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~~~~~~~~~~~~v~~~ 135 (720)
..+.++++.|.+. |+..|..|+.+|++++.++..+..+...|+|..++ .+|.+++. +||..
T Consensus 34 ~~i~Pll~~L~S~------~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~------------~Vr~~ 95 (684)
T 4gmo_A 34 DKILPVLKDLKSP------DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI------------DSRAA 95 (684)
T ss_dssp HTTHHHHHHHSSS------CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH------------HHHHH
T ss_pred hhHHHHHHHcCCC------CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH------------HHHHH
Confidence 3466677777654 55579999999999999999999999999988765 56777766 99999
Q ss_pred HHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCC------c-------cchhhhHHHHHHHHHHHHhhhcCchhh
Q 004992 136 SAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDS------N-------CSRAVNSVIRRAADAITNLAHENSSIK 200 (720)
Q Consensus 136 a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~------~-------~~~~~~~v~~~a~~~L~~l~~~~~~~~ 200 (720)
|+++|.||+ .+++.+..+...|+++.|..+++..... . ......++...++.+|.+||..+....
T Consensus 96 A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~ 175 (684)
T 4gmo_A 96 GWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH 175 (684)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999 5789999999999999999999643110 0 011233566788899999998888777
Q ss_pred HHHHhcCCcHHHHHhhcC---CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHH---HHHHhhcCCCHHHHHHHHHHHH
Q 004992 201 TRVRMEGGIPPLVELLEF---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP---TLILMLRSEDSAIHYEAVGVIG 274 (720)
Q Consensus 201 ~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~---~L~~ll~~~~~~v~~~a~~~L~ 274 (720)
..+...+.++.|+.+|.+ ...+++..++.+|+.++.+++.....+.+.+... .+..+.++.+ ..+..++++|.
T Consensus 176 ~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~ 254 (684)
T 4gmo_A 176 EAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLH 254 (684)
T ss_dssp HHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHH
Confidence 778888999999988743 3478999999999999998888888888766533 3333333333 33455666776
Q ss_pred Hh
Q 004992 275 NL 276 (720)
Q Consensus 275 nL 276 (720)
|+
T Consensus 255 Ni 256 (684)
T 4gmo_A 255 NV 256 (684)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.37 E-value=2.9e-11 Score=113.59 Aligned_cols=184 Identities=28% Similarity=0.317 Sum_probs=158.3
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~ 286 (720)
+..+.++++|+++++.+|..|+.+|..+.. .+.++.|+.++.++++.+|..++++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 456889999999999999999999998873 2478999999999999999999999999841
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcC
Q 004992 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITD 366 (720)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (720)
...++.|+.++.+.++.+|..++++|.++.. ...++.|+.++.++++.+|..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2467889999999999999999999999842 2367889999999999999999999998864
Q ss_pred cchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHH
Q 004992 367 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 446 (720)
Q Consensus 367 ~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~ 446 (720)
...++.|..++.++++.++..++.+|..+..
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------------------------------------- 167 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------------------------------- 167 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------------------------------------
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------------------------------------
Confidence 3467889999999999999999999999832
Q ss_pred hhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhc
Q 004992 447 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 479 (720)
Q Consensus 447 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 479 (720)
...++.|..++.++++.+|..|..+|.++.
T Consensus 168 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 168 ---ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ---HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 124667888899999999999999999874
No 82
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.37 E-value=1.7e-12 Score=156.87 Aligned_cols=458 Identities=10% Similarity=0.011 Sum_probs=270.3
Q ss_pred hhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC--hh-----hHHHHH
Q 004992 29 DEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EE-----VVNWIV 101 (720)
Q Consensus 29 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~--~~-----~~~~~~ 101 (720)
.|+.+.+|+.+...++......... .++.+++.|...+... ++.+|..|+.+|..++.. +. ......
T Consensus 58 ~d~~~~vR~~A~~~L~~l~~~~~~~----~~~~i~~~Ll~~l~d~--~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~ 131 (1230)
T 1u6g_C 58 EDKNGEVQNLAVKCLGPLVSKVKEY----QVETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPPASSGSALAANVC 131 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTSCHH----HHHHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC-----CCTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCCcccccchHHHHH
Confidence 4555556655544332222211112 2333444444443332 345788899999988763 22 011111
Q ss_pred hCCChHHHHHhhcC-CCCcccccCCCcchHHHHHHHHHHHHHhc-cC-hhhHHHHHHcCChHHHHHHHhccCCCccchhh
Q 004992 102 EGGAVPALVKHLQA-PPTSEADRNLKPFEHEVEKGSAFALGLLA-VK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAV 178 (720)
Q Consensus 102 ~~g~i~~L~~ll~~-~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~ 178 (720)
..++|.|+..+.+ .++ .++..|+.+|..++ .. +..... -...++.++..+.+.+.
T Consensus 132 -~~llp~L~~~l~~~~~~------------~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~------- 189 (1230)
T 1u6g_C 132 -KKITGRLTSAIAKQEDV------------SVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRL------- 189 (1230)
T ss_dssp -HHHHHHHHHHHSCCSCH------------HHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSH-------
T ss_pred -HHHHHHHHHHHcCCCch------------HHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcH-------
Confidence 2367889998874 444 89999999999998 22 211110 02245556666655443
Q ss_pred hHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHh
Q 004992 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (720)
Q Consensus 179 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~l 257 (720)
.++..|+.+|..++...+. .+ -...++.++..+.+. +..++..++.++..++...+..-... -..+++.++..
T Consensus 190 -~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~l~~~ll~~ 263 (1230)
T 1u6g_C 190 -AVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKF 263 (1230)
T ss_dssp -HHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH
Confidence 8999999999999964432 12 234567777777543 34577778888888875322211111 14579999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc------------------------------------
Q 004992 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS------------------------------------ 301 (720)
Q Consensus 258 l~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~------------------------------------ 301 (720)
+.++++++|..++.++..++...+....... ..+++.++..+.
T Consensus 264 l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1230)
T 1u6g_C 264 CNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDD 342 (1230)
T ss_dssp HSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC----------------------------------
T ss_pred hcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccc
Confidence 9999999999999999998764332111111 223344433332
Q ss_pred -cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCc-------------
Q 004992 302 -SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDM------------- 367 (720)
Q Consensus 302 -~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------------- 367 (720)
+..|.+|..++.++..++...+.....++ ..+++.++..+.+.++.+|..++.++..+....+..
T Consensus 343 ~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 421 (1230)
T 1u6g_C 343 DDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQG 421 (1230)
T ss_dssp --CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------C
T ss_pred cccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccc
Confidence 12367899999999999864332222222 457788888888889999999999999888632210
Q ss_pred -chhhh--hhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC-CCchhHHHhhcccccccchhhhh---hhhHHHHHHH
Q 004992 368 -HNQAG--IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIV---QATKDCVAKT 440 (720)
Q Consensus 368 -~~~~~--l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~v~~L~~~~~~~---~~~~~~~~~~ 440 (720)
..... -.-...++.+.+.+++.++.+|..++.+|..++.. +....... ...++.+....... ..........
T Consensus 422 ~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l-~~ll~~l~~~L~d~~~~~~v~~~a~~~ 500 (1230)
T 1u6g_C 422 ETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI-PVLVPGIIFSLNDKSSSSNLKIDALSC 500 (1230)
T ss_dssp CCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH-HHHHHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred cchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH-HHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 00011 11123456666778889999999999999988653 11111100 11112211111111 1112222222
Q ss_pred HHHHHHh--------hhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc-------cchhhhccCcHHHHHHhh--cC
Q 004992 441 LKRLEEK--------IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-------QRTIFIDGGGLELLLGLL--GS 503 (720)
Q Consensus 441 ~~~l~~~--------~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~~~L~~ll--~~ 503 (720)
+..+... +-..+++.++..+.++++.++..++.++..++..-. ......-...++.++..+ .+
T Consensus 501 l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d 580 (1230)
T 1u6g_C 501 LYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAAD 580 (1230)
T ss_dssp HHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccC
Confidence 2222111 234678888888888888898889888888863211 111122345678888888 66
Q ss_pred CCchhhhhHHHHHHHHHhhc
Q 004992 504 TNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 504 ~~~~v~~~a~~aL~~L~~~~ 523 (720)
.++++|..|+.++..|+...
T Consensus 581 ~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 581 IDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 78889999999999999764
No 83
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.36 E-value=1.8e-11 Score=115.10 Aligned_cols=185 Identities=24% Similarity=0.266 Sum_probs=157.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhH
Q 004992 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (720)
Q Consensus 249 g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (720)
+..+.++.+|.++++.+|..|+..|..+.. .+.++.|+.++.++++.+|..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 457889999999999999999999998842 2467889999999999999999999998842
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCC
Q 004992 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 408 (720)
Q Consensus 329 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (720)
...++.|+.++.++++.+|..|+++|+.+.. ...++.+..++.++++.+|..++++|.++...
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~- 137 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE- 137 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-
Confidence 2467999999999999999999999998765 24678899999999999999999999998521
Q ss_pred CchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhh
Q 004992 409 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF 488 (720)
Q Consensus 409 ~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 488 (720)
..++.|..++.++++.+|..|+.+|..+..
T Consensus 138 ------------------------------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------- 167 (201)
T 3ltj_A 138 ------------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG-------- 167 (201)
T ss_dssp ------------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------
T ss_pred ------------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------
Confidence 246678889999999999999999999832
Q ss_pred hccCcHHHHHHhhcCCCchhhhhHHHHHHHHHh
Q 004992 489 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 489 ~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~ 521 (720)
...++.|..++.++++.+|..|..+|.++..
T Consensus 168 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 168 --ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp --HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred --hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 2468899999999999999999999988753
No 84
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.31 E-value=1.1e-10 Score=141.14 Aligned_cols=423 Identities=14% Similarity=0.076 Sum_probs=260.1
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhH-HHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~ 137 (720)
++.+++.+.+. |..+|..|...|.+....+... ..-.....++.+++.+.+.++ .+|..|+
T Consensus 8 l~~lL~~l~s~------d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~------------~vR~~A~ 69 (1230)
T 1u6g_C 8 ISNLLEKMTSS------DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG------------EVQNLAV 69 (1230)
T ss_dssp HHHHHHHTTCS------SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH------------HHHHHHH
T ss_pred HHHHHHhcCCC------CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCH------------HHHHHHH
Confidence 55556665543 6668999999998876532100 000011356778888886665 9999999
Q ss_pred HHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhh-----HHHHhcCCcHH
Q 004992 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-----TRVRMEGGIPP 211 (720)
Q Consensus 138 ~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~ 211 (720)
.+|++++ ..++ . .-..+++.++..+.+.+. .+|..++.+|..++....... ..-.-...+|.
T Consensus 70 ~~L~~l~~~~~~---~-~~~~i~~~Ll~~l~d~~~--------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~ 137 (1230)
T 1u6g_C 70 KCLGPLVSKVKE---Y-QVETIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGR 137 (1230)
T ss_dssp HHHHHHHTTSCH---H-HHHHHHHHHHHHTTCSSS--------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCH---H-HHHHHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHH
Confidence 9999999 3322 1 112356777777776655 889999999999886443220 01122356788
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHc
Q 004992 212 LVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (720)
Q Consensus 212 L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~ 290 (720)
|+..+. ++++.++..++.++..++...+....... ..+++.+...+.++++.+|..++.++..++...+. .+ -.
T Consensus 138 L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~ 212 (1230)
T 1u6g_C 138 LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FV 212 (1230)
T ss_dssp HHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CT
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HH
Confidence 999998 58899999999999999842211110011 23677788888899999999999999999855432 11 23
Q ss_pred CChHHHHHhhccCC-hHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcch
Q 004992 291 GALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHN 369 (720)
Q Consensus 291 ~~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (720)
.+++.++..+.+.. +.++..++.++..++...+...... -..+++.++..+.+.++.+|..++.++..++...+. ..
T Consensus 213 ~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~ 290 (1230)
T 1u6g_C 213 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK-EV 290 (1230)
T ss_dssp THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC-CC
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH-HH
Confidence 45788888776543 4677888888888875433221111 246889999999998999999999999999883211 11
Q ss_pred hhhhhhcCCHHHHHHHhc-------------------------------------CCChhHHHHHHHHHHhcccCCCc-h
Q 004992 370 QAGIAHNGGLVPLLKLLD-------------------------------------SKNGSLQHNAAFALYGLADNEDN-V 411 (720)
Q Consensus 370 ~~~l~~~~~i~~l~~ll~-------------------------------------~~~~~v~~~a~~~L~~l~~~~~~-~ 411 (720)
...+ ...++.+++.+. +..+.+|..|+.++..++..... .
T Consensus 291 ~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 291 YPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp HHHH--HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred HHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 1110 112222222221 12356799999999988763221 1
Q ss_pred hHHHhhcccccccchh-hhhhhhHH----HHHHHHHHH----------------------HHhhhhhhHHHHHHHHHhcc
Q 004992 412 ADFIRVGGVQKLQDGE-FIVQATKD----CVAKTLKRL----------------------EEKIHGRVLNHLLYLMRVAE 464 (720)
Q Consensus 412 ~~l~~~~~v~~L~~~~-~~~~~~~~----~~~~~~~~l----------------------~~~~~~~~~~~L~~ll~~~~ 464 (720)
..++. ..++.+.... ......+. ++...+... -...-..+++.+...+++++
T Consensus 369 ~~~~~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~ 447 (1230)
T 1u6g_C 369 PEFYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS 447 (1230)
T ss_dssp HHHHT-TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC
T ss_pred HHHHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC
Confidence 22221 1222222110 00011111 111111111 01223446666777788899
Q ss_pred hhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCc--hhhhhHHHHHHHHHh
Q 004992 465 KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP--KQQLDGAVALFKLAN 521 (720)
Q Consensus 465 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~--~v~~~a~~aL~~L~~ 521 (720)
+.+|..++.+|..++........-.-...++.+..++.++++ .++..++.++..+..
T Consensus 448 ~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 448 VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH
Confidence 999999999999886543211111223567888888888765 899999999998875
No 85
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.15 E-value=1e-10 Score=93.77 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=65.2
Q ss_pred EEEEE-CCeEEehhHHHHhhcchhHhhcccC--CcCCCCCCceecCCCCHHHHHHHHHHHh-----c---CCcc---cCh
Q 004992 555 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIY-----T---GSVD---VTL 620 (720)
Q Consensus 555 v~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y-----t---~~~~---~~~ 620 (720)
+++.. +|..|.+||.+ +..|+||++||.+ .+.|+....|.++++++.+++.+++|+| + +.++ ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 44554 67999999999 9999999999987 6788888899999999999999999999 5 6676 899
Q ss_pred hhHHHHHHHHhhhCh
Q 004992 621 DIAQDLLRAADQYLL 635 (720)
Q Consensus 621 ~~~~~ll~~A~~~~~ 635 (720)
+++.+|+.+|++++.
T Consensus 83 ~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 83 EIALELLMAANFLDC 97 (97)
T ss_dssp GGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhCC
Confidence 999999999999873
No 86
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.09 E-value=2.1e-08 Score=110.45 Aligned_cols=352 Identities=16% Similarity=0.186 Sum_probs=237.4
Q ss_pred hHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 76 DRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
|...+..+.-.+..++.. ++.... ++..+.+=+.+++. .+|..|+.+|+++.. ++..+
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~------------~ir~lALr~L~~i~~-~e~~~--- 145 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNP------------TFMGLALHCIANVGS-REMAE--- 145 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCH------------HHHHHHHHHHHHHCC-HHHHH---
T ss_pred CHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCH------------HHHHHHHHHhhccCC-HHHHH---
Confidence 555666666667776663 443222 34566666677666 899999999999973 44332
Q ss_pred HcCChHHHHHHH--hccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 004992 155 DNGALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (720)
Q Consensus 155 ~~~~l~~L~~lL--~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (720)
..++.+.++| .+.++ -|++.|+.++..+...+++.- ...++++.+..+|.+.++.|+..|+.++.
T Consensus 146 --~l~~~v~~~l~~~d~~~--------~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~ 212 (621)
T 2vgl_A 146 --AFAGEIPKILVAGDTMD--------SVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLIT 212 (621)
T ss_dssp --HHTTHHHHHHHCSSSCH--------HHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 3578888888 55555 999999999999998666432 22478899999999999999999999999
Q ss_pred HhccCChhcHHHHHhCCCHHHHH----HhhcCC-------------CHHHHHHHHHHHHHhhcC-CcchHHHHHHcCChH
Q 004992 233 TLAFKNDENKNQIVECNALPTLI----LMLRSE-------------DSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQ 294 (720)
Q Consensus 233 ~L~~~~~~~~~~i~~~g~l~~L~----~ll~~~-------------~~~v~~~a~~~L~nL~~~-~~~~~~~~~~~~~l~ 294 (720)
.++..++.. + ...+|.++ .++... ++-.+...+..+..++.. ++.....+.+ .++
T Consensus 213 ~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~ 285 (621)
T 2vgl_A 213 TLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLE 285 (621)
T ss_dssp HHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHH
T ss_pred HHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHH
Confidence 999644432 1 12344444 443221 578888888888888643 2333333222 333
Q ss_pred HHHHhhc---------cCC--hHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhh
Q 004992 295 PVIGLLS---------SCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (720)
Q Consensus 295 ~L~~ll~---------~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (720)
.++..+. +.+ ..+..+++.++..+.. .+.... .++..|..++.+.++.+|..|+.+|..++.
T Consensus 286 ~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~- 358 (621)
T 2vgl_A 286 TILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLAS- 358 (621)
T ss_dssp HHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTT-
T ss_pred HHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHh-
Confidence 3433221 112 2677788888888742 222111 356778888988999999999999999998
Q ss_pred hcCcchhhhhhhcCCHHHHHHHhc-CCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHH
Q 004992 364 ITDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 442 (720)
Q Consensus 364 ~~~~~~~~~l~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~ 442 (720)
...... .+ ......++.++. +++..++..++.+|..++.. .+.
T Consensus 359 --~~~~~~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv------------------------------- 402 (621)
T 2vgl_A 359 --SEFSHE-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNA------------------------------- 402 (621)
T ss_dssp --CTTTHH-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHH-------------------------------
T ss_pred --ccCcHH-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhH-------------------------------
Confidence 221111 22 235677888888 89999999999999999843 222
Q ss_pred HHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 443 RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 443 ~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
..++..|...+.+.+.+++..++.+++.++...... ..-.+..|.+++......+...+...+..+...
T Consensus 403 -------~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~----~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~ 471 (621)
T 2vgl_A 403 -------QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD----YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 471 (621)
T ss_dssp -------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS----THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 125566777888889999999999999887432111 112367788888776666777777777777653
No 87
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.05 E-value=1.5e-07 Score=103.73 Aligned_cols=328 Identities=13% Similarity=0.118 Sum_probs=225.0
Q ss_pred CChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 104 g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
.+....++++.+++. ..++.+--.+..++ .+++.... ++..+.+=|.++++ -++
T Consensus 74 ~~~~~vvkl~~s~~~------------~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~--------~ir 128 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRY------------TEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNP--------TFM 128 (621)
T ss_dssp SCHHHHHHGGGCSCH------------HHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCH--------HHH
T ss_pred hhHHHHHHHhcCCCH------------HHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCH--------HHH
Confidence 356777788888766 88999999999999 55554322 24555666665555 888
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh--cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC
Q 004992 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (720)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~ 260 (720)
..|+.+|+++.. ++ + ....++.+.+++ .+.++.||..|+.++..+...+++.. ...++++.+..+|.+
T Consensus 129 ~lALr~L~~i~~--~e----~-~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d 198 (621)
T 2vgl_A 129 GLALHCIANVGS--RE----M-AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLND 198 (621)
T ss_dssp HHHHHHHHHHCC--HH----H-HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTC
T ss_pred HHHHHHhhccCC--HH----H-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCC
Confidence 999999999864 22 2 234678889999 88999999999999999997444332 124799999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHH----HhhccC-------------ChHHHHHHHHHHHHHhccC-
Q 004992 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI----GLLSSC-------------CSESQREAALLLGQFAATD- 322 (720)
Q Consensus 261 ~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~----~ll~~~-------------~~~~~~~a~~~L~~l~~~~- 322 (720)
.++.|+..|+.++..++..++... ...++.++ .++..+ ++=.+...+..+..++..+
T Consensus 199 ~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d 273 (621)
T 2vgl_A 199 QHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED 273 (621)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS
T ss_pred CCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCC
Confidence 999999999999999986655321 12334333 333321 3446666677777665422
Q ss_pred cchhhHHHhcCChHHHHHHhcC-C----------CHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCCh
Q 004992 323 SDCKVHIVQRGAVRPLIEMLQS-P----------DVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNG 391 (720)
Q Consensus 323 ~~~~~~~~~~~~~~~L~~ll~~-~----------~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~ 391 (720)
+.....+.+ .++.++..+.+ + ...+...++.++..+.. .++... .++..|..++.++++
T Consensus 274 ~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~---~~~~~~-----~~~~~L~~~L~~~~~ 343 (621)
T 2vgl_A 274 PAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS---EPNLLV-----RACNQLGQFLQHRET 343 (621)
T ss_dssp HHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC---CHHHHH-----HHHHHHHHHSSCSCH
T ss_pred HHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC---cHHHHH-----HHHHHHHHHhcCCCc
Confidence 222222221 33444433211 1 23777778888777653 222221 346678888888999
Q ss_pred hHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHH-hcchhHHHH
Q 004992 392 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRR 470 (720)
Q Consensus 392 ~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~~~v~~~ 470 (720)
++|..++.+|..++...+.... + ......++.+++ ++++.+|..
T Consensus 344 niry~aL~~l~~l~~~~~~~~~-~----------------------------------~~~~~~i~~~L~~d~d~~Ir~~ 388 (621)
T 2vgl_A 344 NLRYLALESMCTLASSEFSHEA-V----------------------------------KTHIETVINALKTERDVSVRQR 388 (621)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHH-H----------------------------------HTTHHHHHHHHTTCCCHHHHHH
T ss_pred chHHHHHHHHHHHHhccCcHHH-H----------------------------------HHHHHHHHHHhccCCCHhHHHH
Confidence 9999999999999865321111 1 113456777788 899999999
Q ss_pred HHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 471 VALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 471 a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
++.+|..++...+... .+..|...+.+.+.+.+..+..++..++..
T Consensus 389 aL~lL~~l~~~~Nv~~------Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 389 AVDLLYAMCDRSNAQQ------IVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HHHHHHHHCCHHHHHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcChhhHHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 9999999987654332 366777888888999999999999999864
No 88
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.04 E-value=5.4e-10 Score=96.35 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=85.2
Q ss_pred EEEEE-CCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCC------------------
Q 004992 555 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------ 615 (720)
Q Consensus 555 v~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~------------------ 615 (720)
+++.. +|..|.+|+.+ +..|++|++||.+. + ...|.+++++..+++.+++|+|...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~---~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 78 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL---G-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 78 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT---C-CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc---C-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence 56666 67999999998 88999999999753 1 5589999999999999999999876
Q ss_pred --------cccChhhHHHHHHHHhhhChHHHHHHHHHHHHhcCChhhHHHH
Q 004992 616 --------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM 658 (720)
Q Consensus 616 --------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~ 658 (720)
+.++.+++.+|+.+|+++++.+|.++|+.++...+...+.-++
T Consensus 79 i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eei 129 (141)
T 1fs1_B 79 IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI 129 (141)
T ss_dssp --HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 5678899999999999999999999999999888766555544
No 89
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.91 E-value=6.1e-10 Score=98.35 Aligned_cols=107 Identities=15% Similarity=0.290 Sum_probs=60.6
Q ss_pred EEEEE-CCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCC------------------
Q 004992 555 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------ 615 (720)
Q Consensus 555 v~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~------------------ 615 (720)
|++.. +|..|.+|+.+ +..|+||++||.+.. ....|.+++++..+++.+++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 81 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDD 81 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccc
Confidence 55554 68999999999 789999999997642 34589999999999999999999876
Q ss_pred ---------cccChhhHHHHHHHHhhhChHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHc
Q 004992 616 ---------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAF 665 (720)
Q Consensus 616 ---------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i---~~~~~~~~~~~a~~~ 665 (720)
+.++.+++.+|+.+|+++++..|.++|+.++...| +++.+-.++.+...|
T Consensus 82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~ 143 (160)
T 2p1m_A 82 DLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDF 143 (160)
T ss_dssp -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCC
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCC
Confidence 35677889999999999999999999999999988 666666665554433
No 90
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.91 E-value=5.8e-09 Score=116.56 Aligned_cols=219 Identities=13% Similarity=0.115 Sum_probs=163.2
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHH-HHhccCCCccchhhhHHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIR 183 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~~~~~v~~ 183 (720)
.+.++++.|++++. +.|..|+++|++|+.++..+..+...+++..++. +|.+++. +|+.
T Consensus 35 ~i~Pll~~L~S~~~------------~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~--------~Vr~ 94 (684)
T 4gmo_A 35 KILPVLKDLKSPDA------------KSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI--------DSRA 94 (684)
T ss_dssp TTHHHHHHHSSSCC------------SHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH--------HHHH
T ss_pred hHHHHHHHcCCCCH------------HHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH--------HHHH
Confidence 34556677898887 8999999999999999999999999999987655 5666655 9999
Q ss_pred HHHHHHHHhhhc-CchhhHHHHhcCCcHHHHHhhcCCC---------------------HHHHHHHHHHHHHhccCChhc
Q 004992 184 RAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTD---------------------TKVQRAAAGALRTLAFKNDEN 241 (720)
Q Consensus 184 ~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~---------------------~~v~~~a~~~L~~L~~~~~~~ 241 (720)
.|+++|.||+.. .+.....+...|+++.|..+++... ..+...++.+|++|+.++...
T Consensus 95 ~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~ 174 (684)
T 4gmo_A 95 AGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEI 174 (684)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999964 4567777888999999998875211 234557888999999877788
Q ss_pred HHHHHhCCCHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhh--ccCChHHHHHHHHHHH
Q 004992 242 KNQIVECNALPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLG 316 (720)
Q Consensus 242 ~~~i~~~g~l~~L~~ll~~~---~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~~~~~a~~~L~ 316 (720)
...+...+.++.|+.+|.+. ..+++..++.+|.+++.+++...+.+.+.+....+..++ ...+...+..++++|.
T Consensus 175 ~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~ 254 (684)
T 4gmo_A 175 HEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLH 254 (684)
T ss_dssp HHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 88888888999999988542 468999999999999999998888888776543322222 2344456788899999
Q ss_pred HHhcc-----CcchhhHHHhcCChHHHHHHhc
Q 004992 317 QFAAT-----DSDCKVHIVQRGAVRPLIEMLQ 343 (720)
Q Consensus 317 ~l~~~-----~~~~~~~~~~~~~~~~L~~ll~ 343 (720)
|+... ...........-+++.+...+.
T Consensus 255 Ni~~~~~~~d~s~~~~~~~~~~li~~l~~~l~ 286 (684)
T 4gmo_A 255 NVFTSLQWMDHSPGKDGACDAILIPTLTRALE 286 (684)
T ss_dssp HHHHHHTCBTTBCCGGGCSGGGTHHHHHHHHT
T ss_pred hHhhhhhhhhcchhhHHHHHHHHHHhhhhhHh
Confidence 98531 1112222333345566665553
No 91
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.78 E-value=4.1e-08 Score=94.82 Aligned_cols=188 Identities=14% Similarity=0.066 Sum_probs=142.0
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHHHhhhhcCcchhh
Q 004992 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVITDMHNQA 371 (720)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 371 (720)
-+.+.+.+.+.+|..|+.++..|..+..+.+....... ..+++.|...+ ++.+..++..|+.++..|+...+. ....
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~~~ 94 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RFSN 94 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GGHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hHHH
Confidence 34577888899999999999999999875332211111 24577888888 499999999999999999983321 1111
Q ss_pred hhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhh
Q 004992 372 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 451 (720)
Q Consensus 372 ~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (720)
.-..+++.++..+.+++..+|..+..+|..++..... ..
T Consensus 95 --~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---------------------------------------~~ 133 (242)
T 2qk2_A 95 --YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---------------------------------------EA 133 (242)
T ss_dssp --HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---------------------------------------HH
T ss_pred --HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---------------------------------------HH
Confidence 2234688899999999999999999999999764310 12
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHhhcCCc--ccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 452 VLNHLLYLMRVAEKGVQRRVALALAHLCSPD--DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 452 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+++.+...+++.++.+|..++..|..+.... +......-...+|.|..++.++++++|..|..++..++...
T Consensus 134 ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 5677888899999999999999999965442 21111122367899999999999999999999999999765
No 92
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.73 E-value=5.1e-06 Score=71.50 Aligned_cols=215 Identities=20% Similarity=0.193 Sum_probs=171.3
Q ss_pred CCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHH
Q 004992 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (720)
Q Consensus 103 ~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v 181 (720)
...+..++.+|.+.-| .|+..|+.++..++ ..|+....+ +..|+.+++.++.- .+
T Consensus 31 ~~~l~~lI~~LDDDlw------------tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaI-------pl 86 (253)
T 2db0_A 31 ESVLKKLIELLDDDLW------------TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAI-------PL 86 (253)
T ss_dssp HHHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSH-------HH
T ss_pred HHHHHHHHHHhccHHH------------HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccC-------ch
Confidence 3477889999999888 89999999999999 778876554 56788888877664 55
Q ss_pred HHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC
Q 004992 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (720)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~ 261 (720)
.......+..++...|+.- .+.+|.+..-.+-+++.++.....+|..++..+|..... ++.-+..++.++
T Consensus 87 tqeIa~a~G~la~i~Pe~v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltsk 156 (253)
T 2db0_A 87 TQEIAKAFGQMAKEKPELV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSK 156 (253)
T ss_dssp HHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCS
T ss_pred HHHHHHHHhHHHHhCHHHH-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCC
Confidence 5667788898887666533 246799999999999999999999999999866665433 466688889999
Q ss_pred CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHH
Q 004992 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (720)
Q Consensus 262 ~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 341 (720)
+..-+..++..++.+..... + .-..++|.|..+|.+.+.-+|..+..+|.+++..++..+. ++...++-
T Consensus 157 d~~Dkl~aLnFi~alGen~~---~--yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e 225 (253)
T 2db0_A 157 NREDKLTALNFIEAMGENSF---K--YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEE 225 (253)
T ss_dssp SHHHHHHHHHHHHTCCTTTH---H--HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhccCc---c--ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHH
Confidence 98888888888888853322 2 2356899999999999999999999999999987766544 23455667
Q ss_pred hcCCCHHHHHHHHHHHHHHhh
Q 004992 342 LQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~ 362 (720)
+.+.+..++.....+|+.++.
T Consensus 226 ~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 226 LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHH
Confidence 888999999999999998876
No 93
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.67 E-value=7.4e-07 Score=89.08 Aligned_cols=302 Identities=13% Similarity=0.000 Sum_probs=168.0
Q ss_pred HHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHH
Q 004992 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (720)
Q Consensus 133 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (720)
+....++|.-+..+..+.+.-. ..+...+++++.+.+. ++++..--.+.+++...++ .+. ++..+
T Consensus 45 ~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~s~d~--------~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl 109 (355)
T 3tjz_B 45 AHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQSNDP--------TLRRMCYLTIKEMSCIAED---VII---VTSSL 109 (355)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGGCCCH--------HHHHHHHHHHHHHTTTSSC---GGG---GHHHH
T ss_pred HHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhcCCCH--------HHHHHHHHHHHHhCCCHHH---HHH---HHHHH
Confidence 3345555555553333211111 1233455667766655 8888888888887764322 222 56888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCC
Q 004992 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (720)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~ 292 (720)
.+-+.++++-+|-.|+++|+++.. ++..+. +.+.+...+.+.++.||+.|+-+...|....++.. .++
T Consensus 110 ~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~ 177 (355)
T 3tjz_B 110 TKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRW 177 (355)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTT
T ss_pred HhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHH
Confidence 899999999999999999999994 443222 46667888999999999999999999987766532 368
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCC---CHHHHHHHHHHHHHHhhhhcCcch
Q 004992 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP---DVQLREMSAFALGRLAQVITDMHN 369 (720)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~ 369 (720)
++.+.+++.+.++.+..+|..++..+...+.. .+..++..+... ++-.+...++.+..++. .++.
T Consensus 178 ~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~---~d~~ 245 (355)
T 3tjz_B 178 VNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE---DEDG 245 (355)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc---ccch
Confidence 99999999999999999999999999753321 233344444332 45555555555555544 2100
Q ss_pred hhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhh
Q 004992 370 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 449 (720)
Q Consensus 370 ~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (720)
-.....++.+..++++.++.|...|+.+|..+...+.. ...
T Consensus 246 ---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~~--------------------------------- 286 (355)
T 3tjz_B 246 ---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---ELA--------------------------------- 286 (355)
T ss_dssp --------------CCCCCSSHHHHHHHHHHHTC----------------------------------------------
T ss_pred ---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HHH---------------------------------
Confidence 12234667777888899999999999999998653221 110
Q ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHH
Q 004992 450 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 517 (720)
Q Consensus 450 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~ 517 (720)
..+..|..++.++++++|+.|++.|..+.......- ...-..+.++++++|..+...|...|.
T Consensus 287 -~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v----~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 287 -PAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV----TACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp --CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred -HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH----HHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 123345667889999999999999998877543221 123456788899999888877776654
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.67 E-value=8.3e-07 Score=80.06 Aligned_cols=187 Identities=16% Similarity=0.038 Sum_probs=147.7
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchh
Q 004992 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQ 370 (720)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 370 (720)
+.+..+..++.+.++.++..+..+|..+...-+.......-..+++.++.++++.+..+.-.|+.+|..+.. +.+-..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe--~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVK--DVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT--TCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCCCCH
Confidence 367889999999999999999999999986544444444445688999999999999999999999999998 333333
Q ss_pred hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhh
Q 004992 371 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 450 (720)
Q Consensus 371 ~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (720)
..+.. ....+.+++.++++.++..++..+..+.-... ..
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~---------------------------------------~~ 149 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED---------------------------------------SK 149 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC---------------------------------------CH
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc---------------------------------------hH
Confidence 33322 46778888899999999999999999922111 13
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 451 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 451 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
.++..+..++.+.++.++..+..+|.+++........ -.++..-+..++++.|+.++..|..++..+.+.
T Consensus 150 ~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 150 LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 4677888899999999999999999999876543322 234556678899999999999999999999875
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.65 E-value=1.1e-06 Score=79.22 Aligned_cols=187 Identities=19% Similarity=0.148 Sum_probs=148.6
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhccCC-hhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHH
Q 004992 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (720)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~ 285 (720)
+.+..|..++.+.|+.++.+++.+|..+...- ...+....+ .+++.++.++++.+..+...|+++|..|..+.|-...
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45688999999999999999999999999643 233333444 4899999999999999999999999999877665444
Q ss_pred HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhc
Q 004992 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (720)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (720)
... .+...+..++.++++-.+.+++..++.+-- .... .+++..+..++.+.+..++.+|+.++.+++...+
T Consensus 112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv-~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQP-LEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCB-SCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCc-ccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 433 257788999999999999999999998822 1111 2357888899999999999999999999998443
Q ss_pred CcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCC
Q 004992 366 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 408 (720)
Q Consensus 366 ~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (720)
++..-. +++..+-.++++.++.++..|+.++..+...+
T Consensus 183 D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 183 DSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 333333 34566788999999999999999999998654
No 96
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.65 E-value=1e-05 Score=90.14 Aligned_cols=303 Identities=16% Similarity=0.128 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCc
Q 004992 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (720)
Q Consensus 130 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (720)
+.++..|+..|+-+..+.. .. ++..|...|.+.+..........++..|+-.|.....+... + .++
T Consensus 409 ~~ik~GAllaLGli~ag~~--~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--e-----ev~ 474 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFG--RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--I-----EVY 474 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTT--HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--H-----HHH
T ss_pred HHHHHHHHHHHHHhcCCCc--HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--H-----HHH
Confidence 4789999999999882221 11 36777778876541100000116777788888776543321 1 235
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCcchHHHHH
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~l-l~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~ 288 (720)
..|..++.+.+..++..|+.+|+.+-.+.. +. .++..|+.. ..+.+..+++.++..|+.+..+.++.
T Consensus 475 e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~----- 542 (963)
T 4ady_A 475 EALKEVLYNDSATSGEAAALGMGLCMLGTG-KP------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL----- 542 (963)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG-----
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH-----
Confidence 678888888777777788888887633221 11 123344443 34567889999999999987666653
Q ss_pred HcCChHHHHHhhc-cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHHHhhhhcC
Q 004992 289 AAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVITD 366 (720)
Q Consensus 289 ~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~ 366 (720)
++.++..|. +.++-+|..++.+++--..+.... . .++.|+..+ .+.+..+|..|+.+|+.++. +.
T Consensus 543 ----~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~--g~ 609 (963)
T 4ady_A 543 ----ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-S------AVKRLLHVAVSDSNDDVRRAAVIALGFVLL--RD 609 (963)
T ss_dssp ----GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTS--SS
T ss_pred ----HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-H------HHHHHHHHhccCCcHHHHHHHHHHHHhhcc--CC
Confidence 455666665 467888888888887554433222 1 345455554 46788999999999998877 22
Q ss_pred cchhhhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHH
Q 004992 367 MHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 445 (720)
Q Consensus 367 ~~~~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~ 445 (720)
+ ..++.++.++ ++.++.+|..+..+|+.++.....
T Consensus 610 ~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----------------------------------- 645 (963)
T 4ady_A 610 Y---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----------------------------------- 645 (963)
T ss_dssp C---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-----------------------------------
T ss_pred H---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-----------------------------------
Confidence 1 3466666644 678999999999999999754332
Q ss_pred HhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcC--CCchhhhhHHHHHHHH
Q 004992 446 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKL 519 (720)
Q Consensus 446 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~aL~~L 519 (720)
..++..|..+.++++..||..|+.+|+.+.....+.....-.+.+..|.....+ .++..++-+.-|..-+
T Consensus 646 ----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 646 ----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp ----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 125667788889999999999999999996654433111112335556666654 4555676665555443
No 97
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.60 E-value=2.9e-07 Score=88.80 Aligned_cols=186 Identities=15% Similarity=0.237 Sum_probs=137.1
Q ss_pred HHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh-cCCCHHHHHHHHHHHHHhccCCh
Q 004992 161 HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKND 239 (720)
Q Consensus 161 ~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~ 239 (720)
.+...+.+.+ |..|..++..|..++...+...... ...+++.|...+ ++.+..++..|+.++..|+..-.
T Consensus 19 ~l~~~l~s~~--------w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 19 DFYDKLEEKK--------WTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp THHHHHTCSS--------HHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHhhhccCC--------HHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 3555665433 3899999999999987633211000 013456777888 49999999999999999995222
Q ss_pred hcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHh
Q 004992 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (720)
Q Consensus 240 ~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (720)
..-..... .++|.++..+.+.++.+|..+..+|.++..... . ..+++.+...+++.++.+|..++..|..+.
T Consensus 90 ~~~~~~~~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 90 KRFSNYAS-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARAL 161 (242)
T ss_dssp GGGHHHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 22222222 379999999999999999999999999975432 1 136788889999999999999999999965
Q ss_pred ccC-cc-hhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhh
Q 004992 320 ATD-SD-CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (720)
Q Consensus 320 ~~~-~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (720)
... +. .....+ ..++|.+..++.+.++.+|..|..+++.++...
T Consensus 162 ~~~~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 162 TRTQPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp TTCCGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 432 22 122222 357899999999999999999999999999844
No 98
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.58 E-value=7.9e-06 Score=83.36 Aligned_cols=346 Identities=12% Similarity=0.146 Sum_probs=207.9
Q ss_pred CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCc---hhhHHHHhcCCc-HHHHH-hhcCCCHHHHHHHHHHH
Q 004992 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---SIKTRVRMEGGI-PPLVE-LLEFTDTKVQRAAAGAL 231 (720)
Q Consensus 157 ~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~~L~~-ll~~~~~~v~~~a~~~L 231 (720)
.++..++++|...... ++....+..+..+...++ .....+....-. ..+.. ++..+++-....++.++
T Consensus 77 ~~~~~~l~lL~~~~~~-------d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~ 149 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNE-------DCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVV 149 (480)
T ss_dssp TTHHHHHHHHHSCCCH-------HHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcChH-------HHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHH
Confidence 4677888888876554 888888888888887665 332333333222 12332 33344455556666666
Q ss_pred HHhccCChhcHHHHHhCCCHH--HHHHhhcC-CCHHHHHHHHHHHHHhhcCCcchHHHHHHcC--ChHHHHHhhcc----
Q 004992 232 RTLAFKNDENKNQIVECNALP--TLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSS---- 302 (720)
Q Consensus 232 ~~L~~~~~~~~~~i~~~g~l~--~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~--~l~~L~~ll~~---- 302 (720)
..++.......+.+ . +++. .++..|.. ++.+.+..++.+|..|... +..+..+.+.+ .++.++.++..
T Consensus 150 ~ll~~~~~~~~~~l-~-~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 150 SLLVQNGLHNVKLV-E-KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HHHTSTTTCCHHHH-H-HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHhccCCccHhHH-H-HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 66653222211111 1 1233 45555555 3445566678888888654 66666665433 35666544331
Q ss_pred -----------C--ChHHHHHHHHHHHHHhccCcchhhHHHhcCCh--HHHHHHhcC-CCHHHHHHHHHHHHHHhhhhcC
Q 004992 303 -----------C--CSESQREAALLLGQFAATDSDCKVHIVQRGAV--RPLIEMLQS-PDVQLREMSAFALGRLAQVITD 366 (720)
Q Consensus 303 -----------~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 366 (720)
+ ...++.+++.+++-++. ++.....+...++. +.|+..++. ...++.+-++.+|.|+... .
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~--~ 303 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST--R 303 (480)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSS--S
T ss_pred ccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcc--c
Confidence 1 24568889999999975 55555666555543 566666765 6689999999999999982 2
Q ss_pred cchh----h-hhhhcCCHHHHHHHhcC---CChhHHHHHHHHHHhcc-------cCCCchhHHHhhcccccccchhhhhh
Q 004992 367 MHNQ----A-GIAHNGGLVPLLKLLDS---KNGSLQHNAAFALYGLA-------DNEDNVADFIRVGGVQKLQDGEFIVQ 431 (720)
Q Consensus 367 ~~~~----~-~l~~~~~i~~l~~ll~~---~~~~v~~~a~~~L~~l~-------~~~~~~~~l~~~~~v~~L~~~~~~~~ 431 (720)
.... . .+...++ ..+++.|.. .++++....-.....|. ..++....+. .|.+. + -..+
T Consensus 304 ~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~-sG~L~----W-SP~H 376 (480)
T 1ho8_A 304 VKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD-SKLLC----W-SPPH 376 (480)
T ss_dssp STTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH-HTCCC----C-CGGG
T ss_pred chhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHh-cCCcc----c-CCCc
Confidence 1111 1 1222334 445555533 36666554444333332 2222222222 12211 1 1222
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHh----------cchhHHHHHHHHHHhhcCC-cccchhhhccCcHHHHHHh
Q 004992 432 ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV----------AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGL 500 (720)
Q Consensus 432 ~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~----------~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L~~l 500 (720)
........+..++.+ -...++..|++++++ .+|.+..-||.=++.++.. +.++.++.+.|+...+.+|
T Consensus 377 ~se~FW~ENa~kf~e-~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~L 455 (480)
T 1ho8_A 377 VDNGFWSDNIDEFKK-DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMEL 455 (480)
T ss_dssp GCHHHHHHHSGGGSS-GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHH
T ss_pred cchhHHHHHHHHHHh-cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHH
Confidence 222323333333322 355788999999974 4788888999999999775 5588888888999999999
Q ss_pred hcCCCchhhhhHHHHHHHHHhhc
Q 004992 501 LGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 501 l~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+.++|++||..|..|+..+..+.
T Consensus 456 m~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 456 LNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp TSCSSHHHHHHHHHHHHHHHHHS
T ss_pred hcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999888654
No 99
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.58 E-value=1.7e-05 Score=68.39 Aligned_cols=216 Identities=19% Similarity=0.188 Sum_probs=166.3
Q ss_pred hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc-cCChHHHHHHHHHHHHHhccCcch
Q 004992 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDC 325 (720)
Q Consensus 247 ~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~ 325 (720)
+..++..++.+|.++-..|+++|+..+.+++..-++.... .+..|+-++. +.......+.+.+++.++...++.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 3457889999999888899999999999999877776554 3455666655 445677788899999998766655
Q ss_pred hhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 004992 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 326 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (720)
.. +++|.+..-.+-++++++....++|..++. .++..- .++...+..++.++|..=+..++..|..+.
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIar--anP~l~-----~~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAK--ANPMLM-----ASIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHH--HCHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHH--hChHHH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 44 357888888888999999999999999998 233322 234566888889999888888888888887
Q ss_pred cCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc-c
Q 004992 406 DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-Q 484 (720)
Q Consensus 406 ~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~ 484 (720)
.+.. ..-..++++|..++.+.+.-||..|+.+|.+++...+ .
T Consensus 173 en~~-------------------------------------~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl 215 (253)
T 2db0_A 173 ENSF-------------------------------------KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL 215 (253)
T ss_dssp TTTH-------------------------------------HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH
T ss_pred ccCc-------------------------------------cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH
Confidence 5431 1123478999999999999999999999999988765 3
Q ss_pred chhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 485 RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 485 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
+++ +...++=+.+++..+++....+|..+.--
T Consensus 216 Rki------i~~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 216 RKV------VIKRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHH------HHHHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred HHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 333 44445557788888999999999988743
No 100
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.56 E-value=3.3e-07 Score=88.20 Aligned_cols=195 Identities=12% Similarity=0.076 Sum_probs=141.7
Q ss_pred HHHHhhccCChHHHHHHHHHHHH-HhccCcchhhHHHh-cCChHHHHHHh-cCCCHHHHHHHHHHHHHHhhhhcCcchh-
Q 004992 295 PVIGLLSSCCSESQREAALLLGQ-FAATDSDCKVHIVQ-RGAVRPLIEML-QSPDVQLREMSAFALGRLAQVITDMHNQ- 370 (720)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~- 370 (720)
.+.+.+.+.+|.-|++++..|.. +..+++.....-.+ ..++..|.+.+ ++.+..++..|+.+|+.|+...+.+...
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35666788999999999999999 87544332210001 23577888888 7899999999999999999843202222
Q ss_pred hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhh
Q 004992 371 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 450 (720)
Q Consensus 371 ~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (720)
... ...++.++..+.+..+.|+..+..++..++...+... ..+. -.
T Consensus 100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~---~~~~-----------------------------l~ 145 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA---SSGR-----------------------------NE 145 (249)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC---TTCT-----------------------------TH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc---cCCc-----------------------------HH
Confidence 211 2368889999999999999999999998876321100 0000 11
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHhhcCCccc---chhhhc-cCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 451 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ---RTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 451 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.+++.|+..++++++.+|..++.+|..++..... .....- ...+|.|..++.+.+++||..|..++..+....
T Consensus 146 ~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 146 DMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 3677888899999999999999999999765432 111223 578999999999999999999999999998754
No 101
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.52 E-value=2.9e-07 Score=73.44 Aligned_cols=80 Identities=19% Similarity=0.353 Sum_probs=68.4
Q ss_pred eEEEEE-CCeEEehhHHHHhhcchhHhhcccCCcCCCCCCceecCCCCHHHHHHHHHHHhcCC--------------ccc
Q 004992 554 DVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS--------------VDV 618 (720)
Q Consensus 554 Dv~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~--------------~~~ 618 (720)
-+++.. +|..|.+++.+ +..|.+++.|+.+++ |.....|.+++++..+++.+++|+|... .++
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~v 82 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEI 82 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccC
Confidence 366666 78999999997 789999999998866 6666789999999999999999998643 357
Q ss_pred ChhhHHHHHHHHhhhCh
Q 004992 619 TLDIAQDLLRAADQYLL 635 (720)
Q Consensus 619 ~~~~~~~ll~~A~~~~~ 635 (720)
+.+.+.+|+.+|+++++
T Consensus 83 d~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 83 PTEMSLELLLAADYLSI 99 (99)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 78899999999999875
No 102
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.47 E-value=1.9e-05 Score=87.97 Aligned_cols=256 Identities=14% Similarity=0.095 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCC--------HHHHHHHHHHHHHhccCChhcHHHHHhCCCH
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--------TKVQRAAAGALRTLAFKNDENKNQIVECNAL 251 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--------~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l 251 (720)
.++..|+..|..+..+... . .+..|...+.+++ +.++..|+..|+....+... ..++
T Consensus 410 ~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~ 474 (963)
T 4ady_A 410 FIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVY 474 (963)
T ss_dssp HHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHH
T ss_pred HHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHH
Confidence 7788888888887764431 1 3566777776544 67888888888887643321 1256
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhh-ccCChHHHHHHHHHHHHHhccCcchhhHHH
Q 004992 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIV 330 (720)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 330 (720)
+.|..++.+++..++..|+.+|+.+-.++... . .+..|++.+ .+.+..+++.++..|+.+..+.++
T Consensus 475 e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e------ 541 (963)
T 4ady_A 475 EALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE------ 541 (963)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH------
Confidence 77888888888777878888888774443321 1 234444443 345778999999999988654443
Q ss_pred hcCChHHHHHHhc-CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHhcccCC
Q 004992 331 QRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNE 408 (720)
Q Consensus 331 ~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~ 408 (720)
.++.++..|. +.++-+|..++.+++.-.. +..+. ..++.|+..+ .+.+..+|..|..+|..+....
T Consensus 542 ---~~~~li~~L~~~~dp~vRygaa~alglAya---GTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 542 ---LADDLITKMLASDESLLRYGGAFTIALAYA---GTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ---GGHHHHHHHHHCSCHHHHHHHHHHHHHHTT---TSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhc---CCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 3566666665 5788999998888876555 22222 1355455544 5678889999999999885433
Q ss_pred CchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHH-HHHhcchhHHHHHHHHHHhhcCCcccchh
Q 004992 409 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY-LMRVAEKGVQRRVALALAHLCSPDDQRTI 487 (720)
Q Consensus 409 ~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 487 (720)
+. .+++++. ++++.++.+|..++.+|+.++.+.....
T Consensus 610 ~e-----------------------------------------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~- 647 (963)
T 4ady_A 610 YT-----------------------------------------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS- 647 (963)
T ss_dssp CS-----------------------------------------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH-
T ss_pred HH-----------------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH-
Confidence 21 1223333 4457899999999999999986654433
Q ss_pred hhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 488 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 488 ~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
++..|..++.+++..|+..|+.+|..+...
T Consensus 648 -----aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 648 -----AIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp -----HHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred -----HHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 377899999999999999999999988854
No 103
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.45 E-value=2.8e-07 Score=73.09 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=63.3
Q ss_pred EEEEE-CCeEEehhHHHHhhcchhHhhcccC--CcCCCCCCceecCCCCHHHHHHHHHHHhcCC-----------cccCh
Q 004992 555 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL 620 (720)
Q Consensus 555 v~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~-----------~~~~~ 620 (720)
+++.. +|..|.+++.+ +..|.+++.|+.+ .+.|+....|.+|+++..+++.+++|+|... .+++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 45555 77999999997 7899999999985 3456667799999999999999999998653 35788
Q ss_pred hhHHHHHHHHhhhCh
Q 004992 621 DIAQDLLRAADQYLL 635 (720)
Q Consensus 621 ~~~~~ll~~A~~~~~ 635 (720)
+.+.+|+.+|+++++
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999875
No 104
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.41 E-value=7.5e-06 Score=81.84 Aligned_cols=247 Identities=11% Similarity=0.061 Sum_probs=161.6
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHH
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~ 287 (720)
....+++++.++|..+++.+.-.+.+++...++ .+ =++..|.+=++++++-+|-.|+++++++.. ++..+.
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~- 139 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA- 139 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-
Confidence 446677899999999999999999998863222 12 146778888899999999999999999952 333333
Q ss_pred HHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCc
Q 004992 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDM 367 (720)
Q Consensus 288 ~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (720)
+.+.+.+.+.+.++-+|+.|+.+...+....++.. .++++.+.+++.+.++-++.+|+.+|..+.. .+
T Consensus 140 ----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~---~d 207 (355)
T 3tjz_B 140 ----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVRK---ND 207 (355)
T ss_dssp ----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT---TC
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHHh---hc
Confidence 56778889999999999999999999986554432 2688999999999999999999999999887 22
Q ss_pred chhhhhhhcCCHHHHHHHhcCC---ChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHH
Q 004992 368 HNQAGIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 444 (720)
Q Consensus 368 ~~~~~l~~~~~i~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l 444 (720)
. . .+..++..+... ++-.+...+..+..+....+.
T Consensus 208 ~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---------------------------------- 245 (355)
T 3tjz_B 208 R--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---------------------------------- 245 (355)
T ss_dssp H--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------------------------
T ss_pred h--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch----------------------------------
Confidence 1 1 233444444332 344444444444444432200
Q ss_pred HHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 445 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 445 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.....+++.+..++++.++.|..+|++++..+...... . ...++..|..++.++++++|+.|...|..++...
T Consensus 246 --~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~--~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 246 --SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--E--LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp -------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred --hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--H--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence 00123455666677888999999999999998653221 1 1344677888899999999999999988888653
No 105
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.40 E-value=1.7e-06 Score=76.70 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=75.8
Q ss_pred eEEEEE-CCeEEehhHHHHhhcchhHhhcccCCcC----CCCCCceecCCCCHHHHHHHHHHHhcCC-------------
Q 004992 554 DVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGS------------- 615 (720)
Q Consensus 554 Dv~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~------------- 615 (720)
.+++.. +|..|.+++.+ +..|.+++.|+...-. +.....|.+++++..+++.+++|+|...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 466665 57899999998 6689999999975322 2334689999999999999999997643
Q ss_pred ------------cccChhhHHHHHHHHhhhChHHHHHHHHHHHHhcCC
Q 004992 616 ------------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS 651 (720)
Q Consensus 616 ------------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~ 651 (720)
+.++.+.+.+|+.+|+|+++..|.++|+..+...+.
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 235668899999999999999999999988765543
No 106
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=2.7e-07 Score=75.08 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=50.9
Q ss_pred HhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhCChhhHhhhhhcHHHHH
Q 004992 647 AQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH 703 (720)
Q Consensus 647 ~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~~l~ 703 (720)
..+++++||+.++.+|+.|++..|.+.|.+||.+||.++.++++|.+|+.+.+.+++
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL 61 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDII 61 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999665444443
No 107
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.37 E-value=2.8e-06 Score=81.63 Aligned_cols=186 Identities=8% Similarity=0.069 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHH-hhhcCchhhHHHHh-cCCcHHHHHhh-cCCCHHHHHHHHHHHHHhccCCh--hcHHHHHhCCCHHH
Q 004992 179 NSVIRRAADAITN-LAHENSSIKTRVRM-EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKND--ENKNQIVECNALPT 253 (720)
Q Consensus 179 ~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~--~~~~~i~~~g~l~~ 253 (720)
|.-|..++..|.. ++.+.+........ ...+..|...+ ++.+..++..|+.++..++.+-. ........ .++|.
T Consensus 30 w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~ 108 (249)
T 2qk1_A 30 WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTP 108 (249)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHH
Confidence 4888899999999 87544332200000 12456777788 78999999999999999995221 22202222 26999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcch---hhHHH
Q 004992 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC---KVHIV 330 (720)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~ 330 (720)
++..+++..+.|+..+..++..++...+.......-..+++.|...+++.+|.++..++.+|..++...+.. ....+
T Consensus 109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l 188 (249)
T 2qk1_A 109 LLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL 188 (249)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence 999999999999999999998887543211000000125678888899999999999999999998644321 11222
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhc
Q 004992 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (720)
Q Consensus 331 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (720)
...++|.+..++.+.++.+|..|..+++.++...|
T Consensus 189 ~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 189 KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 25689999999999999999999999999998554
No 108
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.34 E-value=7.3e-08 Score=82.88 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=91.9
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCc
Q 004992 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 410 (720)
Q Consensus 331 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (720)
....++.++.+|.++++.+|..|+++|..+.. ..++.|+++++++++.+|..++++|.++...
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~--- 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD--------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE--- 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS--------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH---
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH---
Confidence 34567889999999999999999888875543 1268899999999999999999999998621
Q ss_pred hhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhc
Q 004992 411 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 490 (720)
Q Consensus 411 ~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 490 (720)
..++.|+.+++++++.||..|+++|.++..
T Consensus 73 ----------------------------------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------- 102 (131)
T 1te4_A 73 ----------------------------------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------- 102 (131)
T ss_dssp ----------------------------------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------
T ss_pred ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence 145678888999999999999999999852
Q ss_pred cCcHHHHHHhhcCCCchhhhhHHHHHHH
Q 004992 491 GGGLELLLGLLGSTNPKQQLDGAVALFK 518 (720)
Q Consensus 491 ~~~~~~L~~ll~~~~~~v~~~a~~aL~~ 518 (720)
...++.|..+++++++.||..|+.+|.+
T Consensus 103 ~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2458899999999999999999998764
No 109
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.34 E-value=1.3e-05 Score=93.96 Aligned_cols=485 Identities=10% Similarity=0.010 Sum_probs=245.2
Q ss_pred ccchhcccchhhhccchhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc
Q 004992 13 ERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK 92 (720)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~ 92 (720)
+|..+|..+-+.. .++++.+|+.++...+.+...+-...|...++.+++.+. .. +...+..++.++..++.
T Consensus 82 ~k~~ik~~ll~~l---~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~----s~--~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 82 NVELIKKEIVPLM---ISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLS----ND--DMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp HHHHHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCC----SS--CTTHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhC----CC--CHHHHHHHHHHHHHHHH
Confidence 3555555554444 233355555555433222221112334444555554443 33 33357788888888876
Q ss_pred Ch-------hhHHHHH--hCCChHHHHHh-------hcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHH
Q 004992 93 NE-------EVVNWIV--EGGAVPALVKH-------LQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIV 154 (720)
Q Consensus 93 ~~-------~~~~~~~--~~g~i~~L~~l-------l~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~ 154 (720)
.- +.+..+. -....+.++.+ +.+....... ...-.++...+++++.++. +.++.-....
T Consensus 153 ~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~ 229 (960)
T 1wa5_C 153 RWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKAS---LNILFDVLLVLIKLYYDFNCQDIPEFFEDNI 229 (960)
T ss_dssp GGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHH---HHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH
T ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 31 1111110 01124444443 3332210000 0000134455777887775 3333211100
Q ss_pred HcCChHHHHHHHhccCC-------CccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhc-----CCCHH
Q 004992 155 DNGALSHLVNLLKRHMD-------SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-----FTDTK 222 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~-------~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~ 222 (720)
...++.+..++....+ +......+.++..++.+|..+....+..-.. ....+++.....+. ..+..
T Consensus 230 -~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~-~~~~~~~~~~~~l~~~~~~~~~~~ 307 (960)
T 1wa5_C 230 -QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP-MINEFIQITWNLLTSISNQPKYDI 307 (960)
T ss_dssp -HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHCCSCTTSHH
T ss_pred -HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcCcHH
Confidence 1234566666654221 1111222467888888988888644432111 11234445555553 34578
Q ss_pred HHHHHHHHHHHhccCChhcHHHHHhCCCHH-----HHHHhhc---------CCC--------------HHHHHHHHHHHH
Q 004992 223 VQRAAAGALRTLAFKNDENKNQIVECNALP-----TLILMLR---------SED--------------SAIHYEAVGVIG 274 (720)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~-----~L~~ll~---------~~~--------------~~v~~~a~~~L~ 274 (720)
++..++..+..++. .+..+..+.....++ .++..+. +++ ...|..|..+|.
T Consensus 308 ~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 308 LVSKSLSFLTAVTR-IPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHT-SHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 89999999988875 332222111011222 2333331 011 146778888888
Q ss_pred HhhcCCcchHHHHHHcCChHHHHHhhc------cCChHHHHHHHHHHHHHhccCcchhhHHH----hcCChH----HHHH
Q 004992 275 NLVHSSPNIKKEVLAAGALQPVIGLLS------SCCSESQREAALLLGQFAATDSDCKVHIV----QRGAVR----PLIE 340 (720)
Q Consensus 275 nL~~~~~~~~~~~~~~~~l~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~~~----~L~~ 340 (720)
.++...+ +.+ -..+++.+.+.+. +.+|..+..|+.+++.++.+......... ...+.+ .++.
T Consensus 387 ~l~~~~~---~~v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 387 ELKEKNE---VLV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHCH---HHH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHcc---hhH-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH
Confidence 8875433 121 1224455555555 56799999999999999853211110000 002222 2334
Q ss_pred HhcCC---CHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCC-------c
Q 004992 341 MLQSP---DVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-------N 410 (720)
Q Consensus 341 ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-------~ 410 (720)
.+.++ .+.+|..|+++++.++. .- . ... -...++.+++.+.++++.|+..|+++|.+++.... .
T Consensus 463 ~l~~~~~~~p~vr~~a~~~lg~~~~---~~-~-~~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~ 536 (960)
T 1wa5_C 463 DLTSNNIPHIILRVDAIKYIYTFRN---QL-T-KAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFI 536 (960)
T ss_dssp HHHCSSCSCHHHHHHHHHHHHHTGG---GS-C-HHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBS
T ss_pred HhcCCCCCCceehHHHHHHHHHHHh---hC-C-HHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccccc
Confidence 45665 89999999999999998 21 1 111 23357778888888889999999999999986421 0
Q ss_pred -hhHHHhhcccccccchhh----hh----------hhhHHHHHHHHHHHHHhh---hhhhHHHHHHHHHh-----cchhH
Q 004992 411 -VADFIRVGGVQKLQDGEF----IV----------QATKDCVAKTLKRLEEKI---HGRVLNHLLYLMRV-----AEKGV 467 (720)
Q Consensus 411 -~~~l~~~~~v~~L~~~~~----~~----------~~~~~~~~~~~~~l~~~~---~~~~~~~L~~ll~~-----~~~~v 467 (720)
....+. ..++.+....+ .. .....++...+....+.+ -..+++.|...+.. .++..
T Consensus 537 ~~~~~l~-p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~ 615 (960)
T 1wa5_C 537 FHKEDIS-NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF 615 (960)
T ss_dssp SCGGGTT-TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred ccHHHhh-hhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 011111 11122221111 10 111222222222222221 22344555555443 25566
Q ss_pred HHHHHHHHHhhcCCcc-cchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 468 QRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 468 ~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+..+..+|+.++.... ....-.....+|.+..+++....+...++...+..+....
T Consensus 616 ~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 616 THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 6667777777765421 2222345566888889888877788888888888888654
No 110
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.31 E-value=6.6e-08 Score=83.17 Aligned_cols=120 Identities=23% Similarity=0.228 Sum_probs=93.3
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHH
Q 004992 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (720)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~ 285 (720)
...++.+..+|+++++.+|..|+++|..+.. ..++.|+.+++++++.+|..++++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 4567889999999999999999998887652 136899999999999999999999999841 1
Q ss_pred HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 004992 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (720)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 359 (720)
..++.|+..+.+.++.+|..++++|.++.. ...++.|+.+++++++.+|..|+.+|.+
T Consensus 73 -----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 247889999999999999999999999842 2357889999999999999999998865
No 111
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.26 E-value=5.4e-06 Score=67.31 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=77.3
Q ss_pred ceEEEEECCeEEehhHHHHhhcc-hhHhhcccCCcC----CCCCCceecCCCCHHHHHHHHHHHhcCCcccChhh-HHHH
Q 004992 553 SDVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQDL 626 (720)
Q Consensus 553 ~Dv~~~~~~~~~~~h~~iL~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~l 626 (720)
.-|.+.++|..|...+..|+... .+|..||.+.+. ....+.+-+ |-++..|+.+|+|+.+|++.++.+. ...+
T Consensus 6 ~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l 84 (107)
T 3drz_A 6 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGV 84 (107)
T ss_dssp CEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHH
T ss_pred CEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHH
Confidence 35788999999999999999776 478888876421 123446666 6799999999999999999876543 4789
Q ss_pred HHHHhhhChHHHHHHHHHHHHh
Q 004992 627 LRAADQYLLEGLKRLCEYTIAQ 648 (720)
Q Consensus 627 l~~A~~~~~~~l~~~c~~~l~~ 648 (720)
+.-|++|+++.|.+.|++.|.+
T Consensus 85 ~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 85 LEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999999999999988764
No 112
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.24 E-value=4e-05 Score=89.73 Aligned_cols=380 Identities=11% Similarity=0.018 Sum_probs=210.0
Q ss_pred HhHHHHHHHHHHHHHHccC------------hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHH
Q 004992 75 ADRAAAKRATHVLAELAKN------------EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (720)
Q Consensus 75 ~d~~~~~~a~~~L~~l~~~------------~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~ 142 (720)
.+..+|..|+-.|.|.... ++.+..+. . .++..+.+.+. .+|.+++.+++.
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik-~----~ll~~l~~~~~------------~ir~~l~~~ia~ 111 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK-K----EIVPLMISLPN------------NLQVQIGEAISS 111 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH-H----HHHHHHHHSCH------------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHH-H----HHHHHHHhCCH------------HHHHHHHHHHHH
Confidence 4566899999999987531 22333333 2 24444433334 899999999999
Q ss_pred hc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCc------hhhHHH--HhcCCcHHH
Q 004992 143 LA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------SIKTRV--RMEGGIPPL 212 (720)
Q Consensus 143 L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~------~~~~~~--~~~~~i~~L 212 (720)
++ +.|+ ...+.++.|+..+.+++. ..+..++.+|..++.... +.+..+ .-....+.+
T Consensus 112 ia~~d~p~-----~Wp~ll~~L~~~l~s~~~--------~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~l 178 (960)
T 1wa5_C 112 IADSDFPD-----RWPTLLSDLASRLSNDDM--------VTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPF 178 (960)
T ss_dssp HHHHHSTT-----TCTTHHHHHHTTCCSSCT--------THHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCcc-----chhHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Confidence 98 3332 124567888888866543 667889999999986332 111111 011223333
Q ss_pred HHh-------hcCCC---------HHHHHHHHHHHHHhccC-ChhcHHHHHhCCCHHHHHHhhcCC------C-------
Q 004992 213 VEL-------LEFTD---------TKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSE------D------- 262 (720)
Q Consensus 213 ~~l-------l~~~~---------~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~L~~ll~~~------~------- 262 (720)
+.+ +.++. ..+...++.+++.+... -+....... ...++.+..++... +
T Consensus 179 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~ 257 (960)
T 1wa5_C 179 LNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHAS 257 (960)
T ss_dssp HHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCccccccc
Confidence 332 44332 13334577777776531 121111101 12345555555321 1
Q ss_pred --HHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc-----cCChHHHHHHHHHHHHHhccCcchhhHHHhcCCh
Q 004992 263 --SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (720)
Q Consensus 263 --~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 335 (720)
..+++.++.++..+....+..-.. .-..+++.++..+. .....++..++..+..++.. +.....+...+.+
T Consensus 258 ~~~~vk~~~~~~l~~l~~~~~~~f~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l 335 (960)
T 1wa5_C 258 VLIKVKSSIQELVQLYTTRYEDVFGP-MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAM 335 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHH
Confidence 246788888888887544432111 12245566666664 23567888888888888642 2211111111222
Q ss_pred H-----HHHHHhc-----------------------CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc
Q 004992 336 R-----PLIEMLQ-----------------------SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD 387 (720)
Q Consensus 336 ~-----~L~~ll~-----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~ 387 (720)
+ .++..+. +.....|..|..+|..++.. .. ..+. ...++.+.+.+.
T Consensus 336 ~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~---~~--~~v~-~~~l~~i~~~l~ 409 (960)
T 1wa5_C 336 NNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEK---NE--VLVT-NIFLAHMKGFVD 409 (960)
T ss_dssp HHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHH---CH--HHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHH---cc--hhHH-HHHHHHHHHHHH
Confidence 3 3333331 11124788899999998882 11 1111 113344444454
Q ss_pred ------CCChhHHHHHHHHHHhcccCCCchhHHHhhccc--ccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 004992 388 ------SKNGSLQHNAAFALYGLADNEDNVADFIRVGGV--QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL 459 (720)
Q Consensus 388 ------~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v--~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~l 459 (720)
+.++..+..|+.+++.++..-.... .+.- ..+.+ +..-+...++..
T Consensus 410 ~~~~~~~~~w~~reaal~algaia~~~~~~~----~~~~~~~~~~~----------------------l~~~l~~~v~p~ 463 (960)
T 1wa5_C 410 QYMSDPSKNWKFKDLYIYLFTALAINGNITN----AGVSSTNNLLN----------------------VVDFFTKEIAPD 463 (960)
T ss_dssp HHHC----CHHHHHHHHHHHHHHHBSSCCBT----TBCCCBCTTCC----------------------HHHHHHHHTHHH
T ss_pred HhccCcchhHHHHHHHHHHHHHHHHHhcccc----CCccccccccc----------------------HHHHHHHHhHHH
Confidence 5678999999999999975321110 0000 00000 000012234445
Q ss_pred HHhc---chhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 460 MRVA---EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 460 l~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
+.++ +|-+|..|+++++.++..-. .. .-...++.++..+.++++.|+.+|+.||.++++.
T Consensus 464 l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 464 LTSNNIPHIILRVDAIKYIYTFRNQLT--KA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHCSSCSCHHHHHHHHHHHHHTGGGSC--HH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred hcCCCCCCceehHHHHHHHHHHHhhCC--HH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 5666 89999999999999987632 11 1234577888888888889999999999999975
No 113
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.14 E-value=0.00023 Score=72.76 Aligned_cols=316 Identities=16% Similarity=0.195 Sum_probs=187.4
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-h---hhHHHHHhCCChH-HHHH-hhcCCCCcccccCCCcchHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E---EVVNWIVEGGAVP-ALVK-HLQAPPTSEADRNLKPFEHEV 132 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~---~~~~~~~~~g~i~-~L~~-ll~~~~~~~~~~~~~~~~~~v 132 (720)
+..++..|... .+.++....+..+..+..+ + .....+.+..... .+.. .+.. .++-.
T Consensus 79 ~~~~l~lL~~~-----~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~------------dd~~~ 141 (480)
T 1ho8_A 79 LIPLIHLLSTS-----DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKG------------DFQTV 141 (480)
T ss_dssp HHHHHHHHHSC-----CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCS------------SHHHH
T ss_pred HHHHHHHHhhc-----ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcc------------cchHH
Confidence 34455655554 2334677777777777764 4 3333333332221 1222 2211 12356
Q ss_pred HHHHHHHHHHhc-cChhhHHHHHHcCChH--HHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcC--
Q 004992 133 EKGSAFALGLLA-VKPEHQQLIVDNGALS--HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG-- 207 (720)
Q Consensus 133 ~~~a~~~L~~L~-~~~~~~~~~~~~~~l~--~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-- 207 (720)
...+..++..++ ..+...+.+ ...+. -++..|...... ..+..++.+|..+.. .+..|..+...+
T Consensus 142 ll~a~~l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~-------~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~ 211 (480)
T 1ho8_A 142 LISGFNVVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQM-------DTCYVCIRLLQELAV-IPEYRDVIWLHEKK 211 (480)
T ss_dssp HHHHHHHHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCH-------HHHHHHHHHHHHHHT-SHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCC-------chHHHHHHHHHHHhc-chhHHHHHHHcccc
Confidence 667777766665 222211110 11122 345555543221 334568888888887 677787776543
Q ss_pred CcHHHHHhhcC-----------------CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCH--HHHHHhhcC-CCHHHHH
Q 004992 208 GIPPLVELLEF-----------------TDTKVQRAAAGALRTLAFKNDENKNQIVECNAL--PTLILMLRS-EDSAIHY 267 (720)
Q Consensus 208 ~i~~L~~ll~~-----------------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l--~~L~~ll~~-~~~~v~~ 267 (720)
.++.++.+++. ....++..++-+++-|+. ++...+.+...++. +.|+..++. ..+.|.+
T Consensus 212 ~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvR 290 (480)
T 1ho8_A 212 FMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSR 290 (480)
T ss_dssp HHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHH
T ss_pred hhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHH
Confidence 35566543321 136778999999999998 66666667666543 566666665 4678888
Q ss_pred HHHHHHHHhhcCCc----chHH-HHHHcCChHHHHHhhccC---ChHHHHHHHHHHHHH-------h----------cc-
Q 004992 268 EAVGVIGNLVHSSP----NIKK-EVLAAGALQPVIGLLSSC---CSESQREAALLLGQF-------A----------AT- 321 (720)
Q Consensus 268 ~a~~~L~nL~~~~~----~~~~-~~~~~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l-------~----------~~- 321 (720)
-++.++.|+....+ .... .+...++++ +++.|... ++++....-.....| + ++
T Consensus 291 v~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~ 369 (480)
T 1ho8_A 291 LCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKL 369 (480)
T ss_dssp HHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCC
Confidence 99999999986542 1122 233344444 55555543 444433322211111 1 00
Q ss_pred ---Ccc---------hhhHHHh--cCChHHHHHHhcC----------CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcC
Q 004992 322 ---DSD---------CKVHIVQ--RGAVRPLIEMLQS----------PDVQLREMSAFALGRLAQVITDMHNQAGIAHNG 377 (720)
Q Consensus 322 ---~~~---------~~~~~~~--~~~~~~L~~ll~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~ 377 (720)
++. +...+.+ ..++..|+++|.+ .++.+..-||.=++.++.+ .+..+..+.+-|
T Consensus 370 L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~--~P~gr~i~~~lg 447 (480)
T 1ho8_A 370 LCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL--LPESIDVLDKTG 447 (480)
T ss_dssp CCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH--CTTHHHHHHHHS
T ss_pred cccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH--CcchhHHHHHcC
Confidence 111 1112222 2457888888863 3688888999999999983 677777777888
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 004992 378 GLVPLLKLLDSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 378 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (720)
+-..+.+++.++|++|+..|+.++..+.
T Consensus 448 ~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 448 GKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8889999999999999999999998874
No 114
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.06 E-value=0.00063 Score=76.97 Aligned_cols=288 Identities=12% Similarity=0.100 Sum_probs=191.7
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChh--cHHHHHhCCCHHHHHHhhcC
Q 004992 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLRS 260 (720)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~--~~~~i~~~g~l~~L~~ll~~ 260 (720)
..++..+..+........ ....+.+..+...+.+.... +.|+.++..|+..... ..+...- +.+|.++..+.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~~~~~d 106 (986)
T 2iw3_A 32 HEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV-QLVPAICTNAGN 106 (986)
T ss_dssp HHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH-TTHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH-HHHHHHHHHhcC
Confidence 446666666654322111 11124567777777765444 8899999999952221 2222221 479999999999
Q ss_pred CCHHHHHHHHHHHHHhhcC-CcchHHHHHHcCChHHHHHhhccC-ChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHH
Q 004992 261 EDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (720)
Q Consensus 261 ~~~~v~~~a~~~L~nL~~~-~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 338 (720)
....||..|..++..+... ++... ..++|.|+..+.+. .|..+..|+.++..++...+... ...-..++|.+
T Consensus 107 k~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~-~~~~~~~~p~~ 180 (986)
T 2iw3_A 107 KDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV-ALRMPELIPVL 180 (986)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH-HHhccchhcch
Confidence 9999999888888777643 33322 34689999988765 69999999999999986433222 22224578999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhc
Q 004992 339 IEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 418 (720)
Q Consensus 339 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 418 (720)
-+.+.+..+++..+|..++..+|. .-.|+.. ...+|.|++.+.+++. ...+...|..-+-..+--..
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~---~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~----- 247 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATE---TVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPA----- 247 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGG---GCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHH-----
T ss_pred HhhcccCcHHHHHHHHHHHHHHHh---cCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecch-----
Confidence 999999999999999999999998 3333332 2468999999987743 33344444443221111000
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchh--hhccCcHHH
Q 004992 419 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTI--FIDGGGLEL 496 (720)
Q Consensus 419 ~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~~~ 496 (720)
.-.-++|.|.+-+......+++.++.++-|||.--+.... ..-...+|.
T Consensus 248 -----------------------------~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~ 298 (986)
T 2iw3_A 248 -----------------------------TLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPG 298 (986)
T ss_dssp -----------------------------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHH
T ss_pred -----------------------------hHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhH
Confidence 0011455666667777889999999999999876553322 223456777
Q ss_pred HHHhhcC-CCchhhhhHHHHHHHHHhhc
Q 004992 497 LLGLLGS-TNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 497 L~~ll~~-~~~~v~~~a~~aL~~L~~~~ 523 (720)
|...... .+|++|+.|..|+..|.+..
T Consensus 299 ~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 299 LKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 7776554 89999999999999997653
No 115
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.01 E-value=1.1e-05 Score=65.62 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=63.0
Q ss_pred eEEEEE-CCeEEehhHHHHhhcchhHhhcccC--CcCCCCCCceecCCCCHHHHHHHHHHHhcCC-----------cccC
Q 004992 554 DVTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVT 619 (720)
Q Consensus 554 Dv~~~~-~~~~~~~h~~iL~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~-----------~~~~ 619 (720)
-+++.. +|..|.+++.+ +..|..++.|+.. .+.|.....|.+++++..+++.+++|+|... ++++
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd 96 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 96 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence 356664 67999999996 6699999999984 3456666789999999999999999997543 3578
Q ss_pred hhhHHHHHHHHhhhCh
Q 004992 620 LDIAQDLLRAADQYLL 635 (720)
Q Consensus 620 ~~~~~~ll~~A~~~~~ 635 (720)
.+.+.+|+.+|+++++
T Consensus 97 ~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 97 PEIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8999999999999875
No 116
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.98 E-value=0.00048 Score=77.88 Aligned_cols=285 Identities=13% Similarity=0.108 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cC---hhhHHHHHH
Q 004992 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VK---PEHQQLIVD 155 (720)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~---~~~~~~~~~ 155 (720)
+..++..++++..++... .....+.+..|...+.+... . +.|+.++..|+ .. +..-..+
T Consensus 31 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~------------~--~~a~~~~~~~~~~~~~~~~~e~~~-- 93 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKT------------A--ANAMQAVAHIANQSNLSPSVEPYI-- 93 (986)
T ss_dssp HHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHH------------H--HHHHHHHHHHTCTTTCCTTTHHHH--
T ss_pred HHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCC------------H--HHHHHHHHHHHHhcCCCCCcccch--
Confidence 566777777765532100 01112566677777765433 3 78999999999 22 2222222
Q ss_pred cCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 004992 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTL 234 (720)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~L 234 (720)
.+.++.++....+... .|+..|-.++..+...-+.... ...+|.|+..+.+. .+..+..|+.++..|
T Consensus 94 ~~~~~~~~~~~~dk~~--------~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDK--------EIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAM 161 (986)
T ss_dssp HTTHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 3578888888777665 8888888888888764444332 34578998888655 599999999999999
Q ss_pred ccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CcchHHHHHHcCChHHHHHhhccCChHHHHHHH
Q 004992 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS--SPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (720)
Q Consensus 235 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~ 312 (720)
+...++....-. ..++|.+...+.+..++|...|..++..++.. |.+. ...+|.|+..+.+++. ..++.
T Consensus 162 ~~~~~~~~~~~~-~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~ 232 (986)
T 2iw3_A 162 VDAAKDQVALRM-PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETV 232 (986)
T ss_dssp HHHSHHHHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHH
T ss_pred HHHhHHHHHHhc-cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHH
Confidence 964433222222 34799999999999999999999999999853 3332 3578999999988633 33344
Q ss_pred HHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc-CCCh
Q 004992 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD-SKNG 391 (720)
Q Consensus 313 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~-~~~~ 391 (720)
-.|+.-+...+-....+ .=++|.|..-|......+++.++-.+.||+....++.....+ -...+|.+.+... -.+|
T Consensus 233 ~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~p 309 (986)
T 2iw3_A 233 HLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADP 309 (986)
T ss_dssp HHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSH
T ss_pred HHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCH
Confidence 44443332211111111 124688888888889999999999999999855333332222 3456777777663 4689
Q ss_pred hHHHHHHHHHHhcc
Q 004992 392 SLQHNAAFALYGLA 405 (720)
Q Consensus 392 ~v~~~a~~~L~~l~ 405 (720)
++|..+..++..|-
T Consensus 310 e~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 310 EAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888887773
No 117
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.95 E-value=4.1e-05 Score=89.92 Aligned_cols=447 Identities=10% Similarity=-0.019 Sum_probs=219.0
Q ss_pred ccchhcccchhhhccchhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHcc
Q 004992 13 ERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK 92 (720)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~ 92 (720)
+|..+|..+-+...+....++.+++.+...++.+...+-. .+...++.++..+.+.-...-.+...+..++.+|..++.
T Consensus 79 ~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 79 NREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp GHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 4555555555544322112345555554433222221111 455666666666543100000033356677777776653
Q ss_pred C-----h-hh----HHHHHhCCChHHHH----HhhcCCCCcccccCCCcchHHHHHHHHHHHHHhcc---ChhhHHHHHH
Q 004992 93 N-----E-EV----VNWIVEGGAVPALV----KHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV---KPEHQQLIVD 155 (720)
Q Consensus 93 ~-----~-~~----~~~~~~~g~i~~L~----~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~ 155 (720)
. + .. ++.+.. .++.++ .++....... .......++..++.++..... .|.. ..
T Consensus 158 Ei~~~~~~~~r~~~~~~l~~--~~~~vl~ll~~~l~~~~~~~----~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~ 227 (971)
T 2x1g_F 158 EAQVIHTSVKRVVLRAEIAK--RVQLVIHTVERYLKLQMNRV----WDAEAYSNMNRAVKCVGTWIKNIGYTIE----GC 227 (971)
T ss_dssp HHHHCCCSSCHHHHHHHHHT--THHHHHHHHHHHHHHHTTSC----CCHHHHHHHHHHHHHHHHHHHHSCCCGG----GH
T ss_pred HHhccCcHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccCCC----CCccchhHHHHHHHHHHHHHhhCCcCcc----cc
Confidence 1 1 11 122222 344444 3443221100 000122678888888877552 1221 22
Q ss_pred cCChHHHHHHHhc--------cCCCccchhhhHHHHHHHHHHHHhhhcCchh-hHHHHhcCCcHHHHHh-------hcCC
Q 004992 156 NGALSHLVNLLKR--------HMDSNCSRAVNSVIRRAADAITNLAHENSSI-KTRVRMEGGIPPLVEL-------LEFT 219 (720)
Q Consensus 156 ~~~l~~L~~lL~~--------~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~l-------l~~~ 219 (720)
...++.+.. |.. .++........+++..|+.++..+....+.. ..... ...++.++.+ +.+.
T Consensus 228 ~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~ 305 (971)
T 2x1g_F 228 VTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKR 305 (971)
T ss_dssp HHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSS
T ss_pred ccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcc
Confidence 334555555 410 0000000011288999999999998743211 11111 1122333321 2333
Q ss_pred CH---HHHHHHHHHHHHhccCChhc------------HHHHHhCCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcC
Q 004992 220 DT---KVQRAAAGALRTLAFKNDEN------------KNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHS 279 (720)
Q Consensus 220 ~~---~v~~~a~~~L~~L~~~~~~~------------~~~i~~~g~l~~L~~ll~~-----~~~~v~~~a~~~L~nL~~~ 279 (720)
+. ......++.+..++...... ...+. ..++.++..... .++++...++..+.+++..
T Consensus 306 d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~ 383 (971)
T 2x1g_F 306 ENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDE 383 (971)
T ss_dssp SCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHH
Confidence 42 66667777777776422211 01111 245666665533 4678888899888887541
Q ss_pred C--------cchHHHH---HHcCChHHHHHhhccCC--------h-------HHHHHHHHHHHHHhccCcchhhHHHhcC
Q 004992 280 S--------PNIKKEV---LAAGALQPVIGLLSSCC--------S-------ESQREAALLLGQFAATDSDCKVHIVQRG 333 (720)
Q Consensus 280 ~--------~~~~~~~---~~~~~l~~L~~ll~~~~--------~-------~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 333 (720)
. ....... .-..+++.++..+..++ + ..|+.+..++..++...++ .+.. -
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~---~~l~-~ 459 (971)
T 2x1g_F 384 VFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND---YILE-I 459 (971)
T ss_dssp HHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT---HHHH-H
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH---HHHH-H
Confidence 0 1111111 11234455555553211 1 3456677777777643221 1111 1
Q ss_pred ChHHHHHHhcC-----CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh---c--CCChhHHHHHHHHHHh
Q 004992 334 AVRPLIEMLQS-----PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL---D--SKNGSLQHNAAFALYG 403 (720)
Q Consensus 334 ~~~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll---~--~~~~~v~~~a~~~L~~ 403 (720)
+++.+-..+.. .++..+++++.+++.++... .... ...++.++.++ . +.++.++..+++++..
T Consensus 460 ~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~--~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~ 532 (971)
T 2x1g_F 460 LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHF--GGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGS 532 (971)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhc--Chhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHH
Confidence 23333333432 57789999999999999822 2111 12344444433 3 3488999999999999
Q ss_pred cccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcc
Q 004992 404 LADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 483 (720)
Q Consensus 404 l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 483 (720)
++..-.... . .-..+++.++..+ + +.|+..|+.++.+++....
T Consensus 533 ~~~~l~~~~-----~-----------------------------~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 533 YCNWLMENP-----A-----------------------------YIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp THHHHC--------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHhcCH-----H-----------------------------HHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH
Confidence 875211100 0 0112556666666 3 8899999999999985433
Q ss_pred cchhhhccCcHHHHHHhhcCC--CchhhhhHHHHHHHHHhh
Q 004992 484 QRTIFIDGGGLELLLGLLGST--NPKQQLDGAVALFKLANK 522 (720)
Q Consensus 484 ~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~L~~~ 522 (720)
..-...-...+..|..++..+ +.+.+..+..++..++..
T Consensus 576 ~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 576 LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 221222334566677777763 467888888888888763
No 118
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.85 E-value=0.00058 Score=66.17 Aligned_cols=183 Identities=17% Similarity=0.152 Sum_probs=132.2
Q ss_pred HHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q 004992 161 HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 240 (720)
Q Consensus 161 ~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 240 (720)
.++.-|.+++. +.++.++.-|..+...+......++..+|+..|+......+...+..++.+|.++.. ...
T Consensus 122 ~iiekL~~~~~--------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~ 192 (339)
T 3dad_A 122 AILEKLYSSSG--------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVD 192 (339)
T ss_dssp HHHHHHHHCCH--------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHH
T ss_pred HHHHHHhcCCc--------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccc
Confidence 44455555444 667889999998555577777788999999999999999999999999999999996 555
Q ss_pred cHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHc----------CChHHHHHhhc---cCChH
Q 004992 241 NKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------GALQPVIGLLS---SCCSE 306 (720)
Q Consensus 241 ~~~~i~-~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~----------~~l~~L~~ll~---~~~~~ 306 (720)
+-..++ ....|..+..++.+.+..|.+.|+.+|.+++..++.....+..+ .-+..++.+|+ +.+.+
T Consensus 193 Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e 272 (339)
T 3dad_A 193 GMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE 272 (339)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH
T ss_pred cccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH
Confidence 554554 45678999999998889999999999999987776554443321 23789999997 66889
Q ss_pred HHHHHHHHHHHHhccCcch--hhH----HHhcCChHHHHHHhcCC--CHHHHHH
Q 004992 307 SQREAALLLGQFAATDSDC--KVH----IVQRGAVRPLIEMLQSP--DVQLREM 352 (720)
Q Consensus 307 ~~~~a~~~L~~l~~~~~~~--~~~----~~~~~~~~~L~~ll~~~--~~~v~~~ 352 (720)
++..+...|-.+..+.++. ... +-+.|+-..+...++.. +++.++.
T Consensus 273 lq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 273 LLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 9999888777665443321 112 22344445566656553 5555443
No 119
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.82 E-value=0.00019 Score=84.27 Aligned_cols=438 Identities=12% Similarity=0.039 Sum_probs=216.2
Q ss_pred cccchhcccchhhhccchhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHc
Q 004992 12 PERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELA 91 (720)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~ 91 (720)
.+|..+|..+-+...+....++.+++.+....+.+...+-...+...++.++..+.+.... .++...+..++.+|..++
T Consensus 96 ~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~-~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 96 DQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSP-VDGQGRCLALLELLTVLP 174 (963)
T ss_dssp GGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccC-CCcHHHHHHHHHHHHhCH
Confidence 3455555555555433221234555555443322222221233555666666666441100 013334666777776665
Q ss_pred cC---hh----hHHHHHh--CC----ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhcc-ChhhHHHHHHcC
Q 004992 92 KN---EE----VVNWIVE--GG----AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV-KPEHQQLIVDNG 157 (720)
Q Consensus 92 ~~---~~----~~~~~~~--~g----~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~ 157 (720)
.. .. .+..+.+ .. +++.+..++.+... +..++..++.++..... ..... ....
T Consensus 175 ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~----------~~~~~~~~l~~l~~wi~~~~~~~---~~~~ 241 (963)
T 2x19_B 175 EEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS----------PSCVRQKVLKCFSSWVQLEVPLQ---DCEA 241 (963)
T ss_dssp HHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTC----------CHHHHHHHHHHHHHHHTSSCCGG---GTHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----------chHHHHHHHHHHHHHHcCCCCcc---cchH
Confidence 31 10 1111110 01 23334455544322 11477788888866542 11110 1123
Q ss_pred ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchh--hHHHH---h--cCCcHHHHHhhcCCCHHHHHHHHHH
Q 004992 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI--KTRVR---M--EGGIPPLVELLEFTDTKVQRAAAGA 230 (720)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~---~--~~~i~~L~~ll~~~~~~v~~~a~~~ 230 (720)
.++.+.+.+.. + +++..|+.++..+....... ...+. . .+..+.+...+...+.......+..
T Consensus 242 ll~~l~~~l~~--~--------~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l 311 (963)
T 2x19_B 242 LIQAAFAALQD--S--------ELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRI 311 (963)
T ss_dssp HHHHHHHHTTS--T--------TTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCC--c--------hHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHH
Confidence 45666666632 2 78899999999998643211 11110 0 0112222223344566666677777
Q ss_pred HHHhccCChh-------cHHHHHhCCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCc-------chHHHHHH--
Q 004992 231 LRTLAFKNDE-------NKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSP-------NIKKEVLA-- 289 (720)
Q Consensus 231 L~~L~~~~~~-------~~~~i~~~g~l~~L~~ll~~-----~~~~v~~~a~~~L~nL~~~~~-------~~~~~~~~-- 289 (720)
+..++..... ....+. .+++.++..... .++++...++..+..++.... ........
T Consensus 312 ~~~~~~~~~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (963)
T 2x19_B 312 AVALGENHSRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPV 389 (963)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 7776631111 111111 245556665554 345666666766666654110 00111111
Q ss_pred -cCChHHHHHhhccCCh---------------HHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHh----cCCCHHH
Q 004992 290 -AGALQPVIGLLSSCCS---------------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML----QSPDVQL 349 (720)
Q Consensus 290 -~~~l~~L~~ll~~~~~---------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~v 349 (720)
..+++.++..+..++. +.|..+..+|..++.... ..+. .-+.+.+...+ .+.++..
T Consensus 390 l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l-~~~~~~l~~~l~~~~~~~~w~~ 465 (963)
T 2x19_B 390 YFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELL-SNLYDKLGRLLTSSEEPYSWQH 465 (963)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHH-HHHHHHHHHHHHTCCCSCCHHH
T ss_pred HHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHH-HHHHHHHHHHHHhcCCCCchHH
Confidence 1234444444432211 124455556655553111 1111 11234444445 5578899
Q ss_pred HHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh---cCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccch
Q 004992 350 REMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL---DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 426 (720)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~ 426 (720)
+++++.+++.++... .... ...++.++..+ .++++.++..+++++..++..-...
T Consensus 466 ~eaal~al~~i~~~~--~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~--------------- 523 (963)
T 2x19_B 466 TEALLYGFQSIAETI--DVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH--------------- 523 (963)
T ss_dssp HHHHHHHHHHHTTSC--CSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhhc--Cchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhC---------------
Confidence 999999999999822 2111 12344455444 3357889999999999987521100
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCC--
Q 004992 427 EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST-- 504 (720)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~-- 504 (720)
...-..+++.++..+++ +.|+..|+.++.+++..........-...+..|..++..+
T Consensus 524 -------------------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~ 582 (963)
T 2x19_B 524 -------------------PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIH 582 (963)
T ss_dssp -------------------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCS
T ss_pred -------------------HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 00112366667776754 8899999999999985422111112223455566666652
Q ss_pred CchhhhhHHHHHHHHHhh
Q 004992 505 NPKQQLDGAVALFKLANK 522 (720)
Q Consensus 505 ~~~v~~~a~~aL~~L~~~ 522 (720)
+.+.+..+..++..++..
T Consensus 583 ~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 583 KTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhc
Confidence 456888888888888753
No 120
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.77 E-value=0.00099 Score=64.58 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHH-HccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHH
Q 004992 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAE-LAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (720)
Q Consensus 56 ~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~-l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~ 134 (720)
.-.+..+++.|.+. +...+..++..|.. +..+.+....++..+|+..|+.+....+. ..+.
T Consensus 117 s~ra~~iiekL~~~------~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g------------N~q~ 178 (339)
T 3dad_A 117 SVRVNAILEKLYSS------SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH------------NYQS 178 (339)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH------------HHHH
T ss_pred HHHHHHHHHHHhcC------CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh------------HHHH
Confidence 34455566777754 34468899999999 55688999999999999999999988766 8999
Q ss_pred HHHHHHHHhccChhhHHHHH-HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhc-------
Q 004992 135 GSAFALGLLAVKPEHQQLIV-DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME------- 206 (720)
Q Consensus 135 ~a~~~L~~L~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------- 206 (720)
.++.+|.+|-.....-..++ ....|..+..++..... .|.+.|+.+|..++...+.+...+...
T Consensus 179 Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~--------~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~ 250 (339)
T 3dad_A 179 YILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSR--------LVVKTALKLLLVFVEYSENNAPLFIRAVNSVAST 250 (339)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCH--------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccH--------HHHHHHHHHHHHHHccCcccchHHHHHHHHhhhc
Confidence 99999999996655554444 44578888888884332 899999999999997666554433322
Q ss_pred ---CCcHHHHHhhc---CCCHHHHHHHHHHHHHhccCCh--hcHHHH----HhCCCHHHHHHhhcCC--CHHHHH
Q 004992 207 ---GGIPPLVELLE---FTDTKVQRAAAGALRTLAFKND--ENKNQI----VECNALPTLILMLRSE--DSAIHY 267 (720)
Q Consensus 207 ---~~i~~L~~ll~---~~~~~v~~~a~~~L~~L~~~~~--~~~~~i----~~~g~l~~L~~ll~~~--~~~v~~ 267 (720)
.-++.|+.+|. ..+.+++.++...+..+..+.+ +.+..+ -+.|+=..+...++.. ++++++
T Consensus 251 ~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 251 TGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred cCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 23788999997 6789999998887776665333 212232 2344445566666654 555544
No 121
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.68 E-value=0.0016 Score=76.94 Aligned_cols=336 Identities=12% Similarity=0.049 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHH-HHhccCCCccchhhhHHHHHHHHHHHHhhhcC--ch---hhHHHH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHEN--SS---IKTRVR 204 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~--~~---~~~~~~ 204 (720)
.++..++.++.+...--.. ..+.....++.+.+ ++. ++ +++..|+.+|..+.... +. ....+.
T Consensus 210 ~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~--~~--------~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~ 278 (1049)
T 3m1i_C 210 SLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT--SP--------DTRAITLKCLTEVSNLKIPQDNDLIKRQTV 278 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH--SH--------HHHHHHHHHHHHHHHCCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC--CH--------hHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Confidence 7899999999887621111 22344566676663 332 22 88999999999998642 21 011110
Q ss_pred h--cCCcHHHHH-h-------------hcCCCHHHHHHHHHHHHHhcc-------CChhcHHHHHhCCCHHHHHHhhcCC
Q 004992 205 M--EGGIPPLVE-L-------------LEFTDTKVQRAAAGALRTLAF-------KNDENKNQIVECNALPTLILMLRSE 261 (720)
Q Consensus 205 ~--~~~i~~L~~-l-------------l~~~~~~v~~~a~~~L~~L~~-------~~~~~~~~i~~~g~l~~L~~ll~~~ 261 (720)
. .+.+..+.. + -.+.+.+.....+..+..+.. ..+.....+ ..+++.++.....+
T Consensus 279 ~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~ 356 (1049)
T 3m1i_C 279 LFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIE 356 (1049)
T ss_dssp HHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCC
Confidence 0 111222211 1 122344555555555544432 111122222 13577777777778
Q ss_pred CHHHHHHHHHHHHHhhc----CCc--chHHHHHHcCChHHHHHhhccC-------------------C---hHHHHHHHH
Q 004992 262 DSAIHYEAVGVIGNLVH----SSP--NIKKEVLAAGALQPVIGLLSSC-------------------C---SESQREAAL 313 (720)
Q Consensus 262 ~~~v~~~a~~~L~nL~~----~~~--~~~~~~~~~~~l~~L~~ll~~~-------------------~---~~~~~~a~~ 313 (720)
+.++...++..+..++. ... ...... -..+++.++..+..+ + +..++.+..
T Consensus 357 d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~-l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~ 435 (1049)
T 3m1i_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEI-CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE 435 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHH-HHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH-HHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHH
Confidence 88999888888887764 111 111111 122445555544211 0 123445666
Q ss_pred HHHHHhccCcchhhHHHhcCChHHHHHHhc--CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc----
Q 004992 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD---- 387 (720)
Q Consensus 314 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~---- 387 (720)
+|..++...+.. +. .-+.+.+-..+. ..++..+++++++++.++.. .......-.-..+++.+..+..
T Consensus 436 ~L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~--~~~~~e~~~l~~v~~~l~~l~~~~~~ 509 (1049)
T 3m1i_C 436 VLVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGT--MSEDTEKRFVVTVIKDLLDLTVKKRG 509 (1049)
T ss_dssp HHHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTS--SCHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc--cCchhhHHHHHHHHHHHHHHHhhhcc
Confidence 777776322211 11 112344444454 36789999999999998862 1111111111123333444322
Q ss_pred -CCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchh
Q 004992 388 -SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG 466 (720)
Q Consensus 388 -~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~ 466 (720)
++++.++..++++++.++..-.... ..-..+++.++..+.++++.
T Consensus 510 ~~~~~~v~~~~~~~lgry~~~~~~~~----------------------------------~~l~~vl~~ll~~l~~~~~~ 555 (1049)
T 3m1i_C 510 KDNKAVVASDIMYVVGQYPRFLKAHW----------------------------------NFLRTVILKLFEFMHETHEG 555 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCH----------------------------------HHHHHHHHHHHHHTTSSCHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhHH----------------------------------HHHHHHHHHHHHHhcCCCHH
Confidence 1344555568888888763211000 01123666777788888999
Q ss_pred HHHHHHHHHHhhcCCcccchhhh----------ccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 467 VQRRVALALAHLCSPDDQRTIFI----------DGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 467 v~~~a~~~L~~l~~~~~~~~~~~----------~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
|+..|+.++.+++.... ..+. -...+..|..++..-+.+-.....+++..++..
T Consensus 556 V~~~A~~al~~l~~~~~--~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 556 VQDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH--HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 99999999999987532 2221 122344444555555555556666777777653
No 122
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.65 E-value=0.00019 Score=83.19 Aligned_cols=305 Identities=12% Similarity=0.055 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhh--HHHHhcCC
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK--TRVRMEGG 208 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~ 208 (720)
.++..++.+|.....-.. ...+...+.++.+..+|.++ +++..|+.||..+........ ..++..-.
T Consensus 208 ~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~~----------~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 208 GTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQIE----------ELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCCh----------HHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 788899999999883212 23344567788888888652 899999999999986443322 12221100
Q ss_pred cHHHHHhhc--CCCHHHHHHHHHHHHHhcc------CCh-----hcHH---HHHhCCCHHHHHHhhcCCCHHHHHHHHHH
Q 004992 209 IPPLVELLE--FTDTKVQRAAAGALRTLAF------KND-----ENKN---QIVECNALPTLILMLRSEDSAIHYEAVGV 272 (720)
Q Consensus 209 i~~L~~ll~--~~~~~v~~~a~~~L~~L~~------~~~-----~~~~---~i~~~g~l~~L~~ll~~~~~~v~~~a~~~ 272 (720)
+...+..+. ..|.++....++.+..++. ..+ +.+. ... .+.++.++..+.+++.++...++..
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l-~~ll~~lL~~~~~~~deVs~~t~~F 355 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL-YNLFPYLIRYLSDDYDETSTAVFPF 355 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH-HHTHHHHHHHHTCSSHHHHHTTHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH-HHHHHHHHHHhCCCchhHHHHHHHH
Confidence 111111122 4566666555555443321 111 1111 111 2589999999999998888877777
Q ss_pred HHHhhcC----Cc--chHHH--HHHcCChHHHHHhhccC---C--h-----------HHHHHHHHHHHHHhccCcchhhH
Q 004992 273 IGNLVHS----SP--NIKKE--VLAAGALQPVIGLLSSC---C--S-----------ESQREAALLLGQFAATDSDCKVH 328 (720)
Q Consensus 273 L~nL~~~----~~--~~~~~--~~~~~~l~~L~~ll~~~---~--~-----------~~~~~a~~~L~~l~~~~~~~~~~ 328 (720)
+..+... .. ..... -.-..+++.++.-+..+ + . +.|+.....+..++...++....
T Consensus 356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 6665421 00 00010 01112334444434321 0 1 34555553333333222222111
Q ss_pred HHhcCChHHHHHHhc---CCCHHHHHHHHHHHHHHhhhhcCcchhhhh-hhc----CCHHHHHHHhc-----CCChhHHH
Q 004992 329 IVQRGAVRPLIEMLQ---SPDVQLREMSAFALGRLAQVITDMHNQAGI-AHN----GGLVPLLKLLD-----SKNGSLQH 395 (720)
Q Consensus 329 ~~~~~~~~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l-~~~----~~i~~l~~ll~-----~~~~~v~~ 395 (720)
..-.-+.+.+-+.+. +.++..+++++.+|..+++.. ....... ... ..++.+..++. .+++.++.
T Consensus 436 ~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i--~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~ 513 (980)
T 3ibv_A 436 YMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGL--RGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQL 513 (980)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTC--CSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhc--cccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 000112233333342 246888999999999999822 2211111 011 13445555554 67899999
Q ss_pred HHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHH--HHHhcchhHHHHHHH
Q 004992 396 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY--LMRVAEKGVQRRVAL 473 (720)
Q Consensus 396 ~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~--ll~~~~~~v~~~a~~ 473 (720)
.+++++...+..-.... ..+ ..+++.++. .+.++++.|+..|+.
T Consensus 514 ~~~~~l~rys~~~~~~~-----~~l-----------------------------~~~L~~ll~~~gl~~~~~~V~~~a~~ 559 (980)
T 3ibv_A 514 LYMEILVRYASFFDYES-----AAI-----------------------------PALIEYFVGPRGIHNTNERVRPRAWY 559 (980)
T ss_dssp HHHHHHHHTGGGGGTCC-----TTH-----------------------------HHHHHHHTSTTTTTCCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCc-----hhH-----------------------------HHHHHHHhccccccCCChhHHHHHHH
Confidence 99999999876422110 001 113333444 445577889999999
Q ss_pred HHHhhcCCcc
Q 004992 474 ALAHLCSPDD 483 (720)
Q Consensus 474 ~L~~l~~~~~ 483 (720)
++.+++..-.
T Consensus 560 af~~f~~~~~ 569 (980)
T 3ibv_A 560 LFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999986543
No 123
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.62 E-value=0.0034 Score=72.63 Aligned_cols=315 Identities=12% Similarity=0.086 Sum_probs=170.0
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~ 137 (720)
++..+..|.+.... .++.++..++.++.....- +- ..++..+.++.+..++.. . +++..|+
T Consensus 191 ~~~~~~iL~~~~~~--~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~--~------------~~r~~A~ 252 (980)
T 3ibv_A 191 VSFVYEMMLAYSNA--KNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI--E------------ELRCAAC 252 (980)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS--H------------HHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC--h------------HHHHHHH
Confidence 44444555443221 3455788999999998874 32 345556788888888865 2 8999999
Q ss_pred HHHHHhc-c--ChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhh------cCc-----hhh--H
Q 004992 138 FALGLLA-V--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH------ENS-----SIK--T 201 (720)
Q Consensus 138 ~~L~~L~-~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~------~~~-----~~~--~ 201 (720)
.+|..+. . .++.+..++.. + .+...+..-... ..+.++.+..+..+..++. ..+ +.+ .
T Consensus 253 ecL~ei~~k~~~~~~k~~li~~--l-~L~~~~~~l~~~---~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~ 326 (980)
T 3ibv_A 253 ETMTEIVNKKMKPLEKLNLLNI--L-NLNLFFSKSQEQ---STDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENC 326 (980)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHH--H-HHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHH
T ss_pred HHHHHHHHcCCChhhHHHHHHH--H-hHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhH
Confidence 9999998 2 33333333322 1 112222221000 0011555444444433321 111 000 0
Q ss_pred HHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCC---------hhcHHHHHhCCCHHHHHHhhcC-------C----
Q 004992 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN---------DENKNQIVECNALPTLILMLRS-------E---- 261 (720)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~---------~~~~~~i~~~g~l~~L~~ll~~-------~---- 261 (720)
.-.-.+.++.++.++.+++.++...++..+..+.... ......+.. .+++.++.-+.- +
T Consensus 327 ~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ 405 (980)
T 3ibv_A 327 SFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDS 405 (980)
T ss_dssp HHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSS
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccch
Confidence 0112367888999999988888877766665544210 011111111 134444444431 1
Q ss_pred C-----HHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhc---cCChHHHHHHHHHHHHHhccCcchhhHH-Hhc
Q 004992 262 D-----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQFAATDSDCKVHI-VQR 332 (720)
Q Consensus 262 ~-----~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~ 332 (720)
+ .+.|+.....+..++.-.+.........-+.+.+.+.+. +.+|..++.++.+|..++.+.......+ -..
T Consensus 406 ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~ 485 (980)
T 3ibv_A 406 EEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVD 485 (980)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCccc
Confidence 1 135655554444443333332222111112223333332 3469999999999999986544322221 011
Q ss_pred C----ChHHHHHHhc-----CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh------cCCChhHHHHH
Q 004992 333 G----AVRPLIEMLQ-----SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL------DSKNGSLQHNA 397 (720)
Q Consensus 333 ~----~~~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll------~~~~~~v~~~a 397 (720)
. +++.+..++. .+.+.++..++++++..+. .-.. ....++.++..+ .+++..++..|
T Consensus 486 ~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~---~~~~-----~~~~l~~~L~~ll~~~gl~~~~~~V~~~a 557 (980)
T 3ibv_A 486 KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYAS---FFDY-----ESAAIPALIEYFVGPRGIHNTNERVRPRA 557 (980)
T ss_dssp CCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGG---GGGT-----CCTTHHHHHHHHTSTTTTTCCCTTTHHHH
T ss_pred chhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH---HHhc-----CchhHHHHHHHHhccccccCCChhHHHHH
Confidence 2 3455555544 5789999999999999988 2221 124455555544 35678899999
Q ss_pred HHHHHhccc
Q 004992 398 AFALYGLAD 406 (720)
Q Consensus 398 ~~~L~~l~~ 406 (720)
+.++.+++.
T Consensus 558 ~~af~~f~~ 566 (980)
T 3ibv_A 558 WYLFYRFVK 566 (980)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999975
No 124
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.50 E-value=0.012 Score=68.88 Aligned_cols=215 Identities=12% Similarity=0.085 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccC-CCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCc
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHM-DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (720)
..++.++.+++.+++...... ...++.++.++..-. ++. ...++..+++++..++..-..... .-..++
T Consensus 479 ~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~----~~~vr~~a~~~l~~~~~~l~~~~~--~l~~vl 548 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKL----NVKLLGTALETMGSYCNWLMENPA--YIPPAI 548 (971)
T ss_dssp HHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTS----CHHHHHHHHHHHHHTHHHHC------CHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCcccc----CHHHHHHHHHHHHHHHHHHhcCHH--HHHHHH
Confidence 889999999999993322111 134455555442211 000 118999999999999853222111 112345
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHh--CCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCc-chH
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSP-NIK 284 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~--~g~l~~L~~ll~~~--~~~v~~~a~~~L~nL~~~~~-~~~ 284 (720)
+.++..+. +.++..|+.++.+++... +..+.. ..++..+..++..+ +...+..+..+++.++...+ ...
T Consensus 549 ~~l~~~l~---~~v~~~A~~al~~l~~~~---~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 549 NLLVRGLN---SSMSAQATLGLKELCRDC---QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHHHH---SSCHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHhC---hHHHHHHHHHHHHHHHHH---HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 66666662 678999999999999533 233322 23566666777763 56888888999998875432 222
Q ss_pred HHHHHcCChHHHHHhh----ccC--ChHHHHHHHHHHHHHhcc----Ccc-----------hhhHHHhcCChHHHHHHhc
Q 004992 285 KEVLAAGALQPVIGLL----SSC--CSESQREAALLLGQFAAT----DSD-----------CKVHIVQRGAVRPLIEMLQ 343 (720)
Q Consensus 285 ~~~~~~~~l~~L~~ll----~~~--~~~~~~~a~~~L~~l~~~----~~~-----------~~~~~~~~~~~~~L~~ll~ 343 (720)
... -..+++.++..+ +.. +.+.+......+..++.. .+. ....-....+++.+..++.
T Consensus 623 ~~~-~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 701 (971)
T 2x1g_F 623 PKY-LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAE 701 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHH
Confidence 221 122344444333 332 333334444444443311 000 0111223457788777775
Q ss_pred C--CCHHHHHHHHHHHHHHhh
Q 004992 344 S--PDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 344 ~--~~~~v~~~a~~~L~~l~~ 362 (720)
. .+..+.+.++++++.++.
T Consensus 702 ~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 702 MWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HTTTCHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHH
Confidence 3 478999999999999887
No 125
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.42 E-value=0.011 Score=68.71 Aligned_cols=338 Identities=12% Similarity=0.051 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHH-HHHhccCCCccchhhhHHHHHHHHHHHHhhhcC---c--hhhHHHH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLV-NLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN---S--SIKTRVR 204 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~~~ 204 (720)
++...++.++.....--. -..+...+.++.+. .+|..+ +++..|+.||..+.... + .....+.
T Consensus 210 ~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~l~~~~L~~~----------~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~ 278 (1023)
T 4hat_C 210 SLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFMTSP----------DTRAITLKCLTEVSNLKIPQDNDLIKRQTV 278 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHHHSH----------HHHHHHHHHHHHHHTSCCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-HHHhcchhHHHHHHHHHcCCH----------HHHHHHHHHHHHHHccccCCchHHHHHHHH
Confidence 788889999998873212 23455678889988 887543 88999999999998632 1 1111111
Q ss_pred h--cCCcHHH--------------HHhhcCCCHHHHHHHHHHHHHhccC-------ChhcHHHHHhCCCHHHHHHhhcCC
Q 004992 205 M--EGGIPPL--------------VELLEFTDTKVQRAAAGALRTLAFK-------NDENKNQIVECNALPTLILMLRSE 261 (720)
Q Consensus 205 ~--~~~i~~L--------------~~ll~~~~~~v~~~a~~~L~~L~~~-------~~~~~~~i~~~g~l~~L~~ll~~~ 261 (720)
. .+.+..+ .......+.+.....+..+..+... ++..+..+ . .++..|+..-..+
T Consensus 279 ~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l-~-~~l~~Ll~~~~~~ 356 (1023)
T 4hat_C 279 LFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL-L-NAHQYLIQLSKIE 356 (1023)
T ss_dssp HHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHH-H-HHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHH-H-HHHHHHHHhhCCC
Confidence 0 0111111 1111223466666666666554421 11111111 1 1233455554556
Q ss_pred CHHHHHHHHHHHHHhhcC--CcchHHHH---HHcCChHHHHHhhccCC-----------h--------H---HHHHHHHH
Q 004992 262 DSAIHYEAVGVIGNLVHS--SPNIKKEV---LAAGALQPVIGLLSSCC-----------S--------E---SQREAALL 314 (720)
Q Consensus 262 ~~~v~~~a~~~L~nL~~~--~~~~~~~~---~~~~~l~~L~~ll~~~~-----------~--------~---~~~~a~~~ 314 (720)
+.++...++..-..++.. .+..+... +-..+++.++.-+..+. + + .-+..-.+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 778877777766666421 00000100 01123444444443221 1 0 00011123
Q ss_pred HHHHhccCcchhhHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcC----
Q 004992 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDS---- 388 (720)
Q Consensus 315 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~---- 388 (720)
|..++...... .. .-+++.+.+.+.. .++..+++++++++.++. +..+....-.-..+++.|+.+..+
T Consensus 437 L~~l~~l~~~~---~~-~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~--~~~~~~e~~~l~~vi~~Ll~l~~~~~~~ 510 (1023)
T 4hat_C 437 LVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISG--TMSEDTEKRFVVTVIKDLLDLCVKKRGK 510 (1023)
T ss_dssp HHHHHHHCHHH---HH-HHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTT--SSCHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHhccCHHH---HH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHHHHhhhccccC
Confidence 33332211111 10 0123444444443 679999999999999998 222222222223456777777753
Q ss_pred -CChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhH
Q 004992 389 -KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGV 467 (720)
Q Consensus 389 -~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v 467 (720)
+...++..++++|+.+++.-..... .-..++..|+..+.+++|.+
T Consensus 511 d~k~~v~~t~~~~lGry~~wl~~~~~----------------------------------~L~~vl~~L~~~l~~~~~~v 556 (1023)
T 4hat_C 511 DNKAVVASDIMYVVGQYPRFLKAHWN----------------------------------FLRTVILKLFEFMHETHEGV 556 (1023)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHCHH----------------------------------HHHHHHHHHHHHTTCSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHH----------------------------------HHHHHHHHHHHHhhcCCHHH
Confidence 3445667888999988752111000 11225566777777788999
Q ss_pred HHHHHHHHHhhcCCcccchhhhc----------cCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 468 QRRVALALAHLCSPDDQRTIFID----------GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 468 ~~~a~~~L~~l~~~~~~~~~~~~----------~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
+..|+.++.++|..-. ..+.. ...+..+......-++.-+..+..++..+....
T Consensus 557 ~~~A~~al~~l~~~c~--~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 557 QDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH--HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999986522 22211 122333444444455666677888888888754
No 126
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.35 E-value=0.059 Score=62.97 Aligned_cols=331 Identities=11% Similarity=0.065 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcH
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (720)
..++.++.+++.+++.... .....++.++..+..-..+ ...++..+++++..++..-..... .-...++
T Consensus 464 ~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~-----~~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl~ 532 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISIS-----NVQLADTVMFTIGALSEWLADHPV--MINSVLP 532 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCC-----SHHHHHHHHHHHHHTHHHHHHCHH--HHTTTHH
T ss_pred HHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHH
Confidence 8899999999999932111 0123345555555322211 117899999999999863222222 2347888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHh--CCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCc-chHH
Q 004992 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NIKK 285 (720)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~--~g~l~~L~~ll~~--~~~~v~~~a~~~L~nL~~~~~-~~~~ 285 (720)
.++..+.+ +.++..|+.++.+++.... ..+.. ..++..+..++.. -+...+..+..+++.++...+ ....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~---~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECK---YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTG---GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 88888865 7899999999999995322 22211 1234444555554 356788888999999875443 2222
Q ss_pred HHHHcCChHHHHHhhc----cC-ChHHHHH---HHHHHHHHhccCcc-------------------hh--hHHHhcCChH
Q 004992 286 EVLAAGALQPVIGLLS----SC-CSESQRE---AALLLGQFAATDSD-------------------CK--VHIVQRGAVR 336 (720)
Q Consensus 286 ~~~~~~~l~~L~~ll~----~~-~~~~~~~---a~~~L~~l~~~~~~-------------------~~--~~~~~~~~~~ 336 (720)
.. -..+++.+...+. .. +++.+.. ...+|..+...-.. .. ..-....+++
T Consensus 608 ~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KN-LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HH-HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 22 2234444444442 22 4444443 33334333321100 00 1112234556
Q ss_pred HHHHHhcC--CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHh----c-CCChhHHHHHHHHHHhccc---
Q 004992 337 PLIEMLQS--PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLL----D-SKNGSLQHNAAFALYGLAD--- 406 (720)
Q Consensus 337 ~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll----~-~~~~~v~~~a~~~L~~l~~--- 406 (720)
.+..++.. .++.+.+.++.++..++...+ +. + ...++.++..+ . .+.+.+ ++++..+..
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~--~~---~--~~~l~~~~~~l~~~~~~~~~~~~----l~l~~~li~~f~ 755 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL--DD---F--APMVPQLCEMLGRMYSTIPQASA----LDLTRQLVHIFA 755 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS--ST---T--GGGHHHHHHHHHHHHHHSCCHHH----HHHHHHHHHHHT
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhc--cc---c--cccHHHHHHHHHHHHHcCCccHH----HHHHHHHHHHhC
Confidence 66666542 567899999999998876221 11 1 11244444432 1 122322 233333321
Q ss_pred -CCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHh---cchhHHHHHHHHHHhhcCCc
Q 004992 407 -NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV---AEKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 407 -~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~ 482 (720)
.+.....+ . . .-..++..++.++.. ..|+++......+..+....
T Consensus 756 ~~~~~~~~~-~----------------------~--------~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~ 804 (963)
T 2x19_B 756 HEPAHFPPI-E----------------------A--------LFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRK 804 (963)
T ss_dssp TCTTTCHHH-H----------------------H--------HHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCcchHHHH-H----------------------H--------HHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhC
Confidence 11000000 0 0 001123333444442 36889988888888876433
Q ss_pred ccchhhhccC-----cHHHHHHhhcCCCchhhhhHHHHHHHHHhh
Q 004992 483 DQRTIFIDGG-----GLELLLGLLGSTNPKQQLDGAVALFKLANK 522 (720)
Q Consensus 483 ~~~~~~~~~~-----~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~ 522 (720)
... +.... .++.+...+...++++...+...+..+...
T Consensus 805 ~~~--~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 805 PDL--FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp GGG--GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred cHH--HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 211 11122 345556667788888999999999998864
No 127
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.34 E-value=0.00019 Score=67.86 Aligned_cols=91 Identities=21% Similarity=0.193 Sum_probs=57.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcC
Q 004992 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (720)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~ 291 (720)
+..+++++++.||..++.. +. .+.+..++++++..||..++.. +
T Consensus 151 l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~---l--------------- 194 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASR---L--------------- 194 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHH---C---------------
T ss_pred HHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHh---C---------------
Confidence 3455566677777666653 11 1344456677777777666643 2
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 004992 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357 (720)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 357 (720)
..+.|..++.+.+|.+|..++..+. .+.|..+ +++++.||..+...|
T Consensus 195 ~~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 RGDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp CGGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1245677778888888888777642 2445445 788888888877654
No 128
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0063 Score=59.41 Aligned_cols=193 Identities=11% Similarity=0.074 Sum_probs=128.5
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcH--HHHHh--CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN- 282 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~i~~--~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~- 282 (720)
-+| +-+-|.+.++..|..|+..|..+....+... ..... ....+.+-+.+.|.+..+...++.++..++.....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 345 6678889999999999999988775332211 11111 23567777888999999999999999988743211
Q ss_pred --hH--HHHHHcCChHHHHHh-hccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 004992 283 --IK--KEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357 (720)
Q Consensus 283 --~~--~~~~~~~~l~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 357 (720)
.. .......+++.|+.- +.+....++..+..++..++...... . .+++.+...+.+.++.++..++..|
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhccCHHHHHHHHHHH
Confidence 11 112234466777754 67778889988888888776422111 1 1346667778889999999999999
Q ss_pred HHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC
Q 004992 358 GRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 407 (720)
Q Consensus 358 ~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (720)
..+....|.........-..+++.+..++.+.++.||..|..++..+...
T Consensus 164 ~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 99887332221111111123455678888999999999999999888653
No 129
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.26 E-value=0.0005 Score=61.50 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=76.5
Q ss_pred CcceEEEEECCeEEehhHHHHhhcch-hHhhcccCCcC----CCCCCceecCCCCHHHHHHHHHHHhcCCcccChhh-HH
Q 004992 551 TLSDVTFLVEGRRFYAHRICLLASSD-AFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQ 624 (720)
Q Consensus 551 ~~~Dv~~~~~~~~~~~h~~iL~~~s~-~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~ 624 (720)
...-|.+.++|..|...+..|....+ +|..||.+.+. ....+.+-+ |-++..|+.+|+|+.+|.+.++.+. ..
T Consensus 10 ~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~ 88 (202)
T 3drx_A 10 VSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEE 88 (202)
T ss_dssp CCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHH
T ss_pred CCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHH
Confidence 34457889999999999999987653 78888875421 113345666 6689999999999999999876543 46
Q ss_pred HHHHHHhhhChHHHHHHHHHHHHh
Q 004992 625 DLLRAADQYLLEGLKRLCEYTIAQ 648 (720)
Q Consensus 625 ~ll~~A~~~~~~~l~~~c~~~l~~ 648 (720)
.++.-|++|+++.|.+.|.+.+.+
T Consensus 89 ~l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 89 GVLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHH
Confidence 799999999999999999888765
No 130
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.22 E-value=0.085 Score=62.13 Aligned_cols=376 Identities=13% Similarity=0.088 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHccC--hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChh------
Q 004992 78 AAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE------ 148 (720)
Q Consensus 78 ~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~------ 148 (720)
.++...+.+++.++.. |+.. .+.++.|+..+. .+. ..++.++.+|..++ ...+
T Consensus 115 ~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~-~~~------------~~~~~~l~~L~~l~eev~~~~~~~~ 176 (1049)
T 3m1i_C 115 NLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS-SSV------------NVCENNMIVLKLLSEEVFDFSAEQM 176 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHT-TCH------------HHHHHHHHHHHHHHHHHHTSCTTTS
T ss_pred HHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHc-cCh------------HHHHHHHHHHHHHHHHHHHhcchhh
Confidence 3555555555555542 2110 245677777775 222 45667777777776 1110
Q ss_pred --h-----HHHHHH--cCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHH-HhhcC
Q 004992 149 --H-----QQLIVD--NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEF 218 (720)
Q Consensus 149 --~-----~~~~~~--~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~ 218 (720)
. +..+.. ..+++.+..++.+..+. +++..++.++.++....+. ..+.....++.+. .++.
T Consensus 177 ~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~-------~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l~- 246 (1049)
T 3m1i_C 177 TQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSS-------SLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMT- 246 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhCC-
Confidence 0 112221 12334445555543321 7888999999887754432 2244456666666 3343
Q ss_pred CCHHHHHHHHHHHHHhccCC--hhc---HHHHHh--CCCHHHHHH-h-------------hcCCCHHHHHHHHHHHHHhh
Q 004992 219 TDTKVQRAAAGALRTLAFKN--DEN---KNQIVE--CNALPTLIL-M-------------LRSEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~--~~~---~~~i~~--~g~l~~L~~-l-------------l~~~~~~v~~~a~~~L~nL~ 277 (720)
++.++..|+.+|..+.... +.. ...+.. .+++..+.. + -.+.+.+.....+..+..+.
T Consensus 247 -~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~ 325 (1049)
T 3m1i_C 247 -SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYL 325 (1049)
T ss_dssp -SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHH
T ss_pred -CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 7899999999999988632 110 111110 112222211 1 12234445455555554443
Q ss_pred cC-------CcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcc---CcchhhHHH--hcCChHHHHHHhcCC
Q 004992 278 HS-------SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT---DSDCKVHIV--QRGAVRPLIEMLQSP 345 (720)
Q Consensus 278 ~~-------~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~--~~~~~~~L~~ll~~~ 345 (720)
.. .+.....+ ..+++.++.+....+.++...++..+..++.. .+.....+. -..+++.++..+.-+
T Consensus 326 ~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ 403 (1049)
T 3m1i_C 326 ARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRP 403 (1049)
T ss_dssp HHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11 11111111 23566677666667778888888777777641 111111111 112334444444211
Q ss_pred -------------------CH---HHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc--CCChhHHHHHHHHH
Q 004992 346 -------------------DV---QLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD--SKNGSLQHNAAFAL 401 (720)
Q Consensus 346 -------------------~~---~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~--~~~~~v~~~a~~~L 401 (720)
+. ..+..+..+|..++... + ..+. .-..+.+.+.+. +.++..+..+++++
T Consensus 404 ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~--~---~~~l-~~v~~~l~~~l~~~~~~W~~~eaal~al 477 (1049)
T 3m1i_C 404 EEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN--V---IDTE-EIMISKLARQIDGSEWSWHNINTLSWAI 477 (1049)
T ss_dssp TTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC--H---HHHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred cceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC--H---HHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 11 23556667777777521 1 1110 112333444443 36789999999999
Q ss_pred HhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHH-----hcchhHHHHHHHHHH
Q 004992 402 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-----VAEKGVQRRVALALA 476 (720)
Q Consensus 402 ~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-----~~~~~v~~~a~~~L~ 476 (720)
+.++...... .+. ..-..+++.++.+.. ++++.++..++++++
T Consensus 478 gsia~~~~~~---~e~-----------------------------~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg 525 (1049)
T 3m1i_C 478 GSISGTMSED---TEK-----------------------------RFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG 525 (1049)
T ss_dssp HHTTTSSCHH---HHH-----------------------------HHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCch---hhH-----------------------------HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence 9987542110 000 001123333444322 356677767889999
Q ss_pred hhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 477 HLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 477 ~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.++..-...... -...++.|+..+.++++.|+..|+.++.+++++.
T Consensus 526 ry~~~~~~~~~~-l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 526 QYPRFLKAHWNF-LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HCHHHHHHCHHH-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 886542222111 1245677777888889999999999999999864
No 131
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.16 E-value=0.00035 Score=65.99 Aligned_cols=178 Identities=21% Similarity=0.162 Sum_probs=117.0
Q ss_pred hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCc
Q 004992 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN 173 (720)
Q Consensus 94 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 173 (720)
+..|......=....+..+++++++ .||..++..| . .+.+..++++.+.
T Consensus 64 ~~VR~~AA~~l~~~~l~~L~~D~~~------------~VR~~aA~~L---~--------------~~~L~~ll~D~d~-- 112 (244)
T 1lrv_A 64 WERRAIAVRYSPVEALTPLIRDSDE------------VVRRAVAYRL---P--------------REQLSALMFDEDR-- 112 (244)
T ss_dssp HHHHHHHHTTSCGGGGGGGTTCSSH------------HHHHHHHTTS---C--------------SGGGGGTTTCSCH--
T ss_pred HHHHHHHHHhCCHHHHHHHccCcCH------------HHHHHHHHHC---C--------------HHHHHHHHcCCCH--
Confidence 5666666654344555666666666 7888877542 1 1345556666555
Q ss_pred cchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHH
Q 004992 174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (720)
Q Consensus 174 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~ 253 (720)
.|+..++..+ . .+.+..+++++++.||..++.. +. .+.
T Consensus 113 ------~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~~ 150 (244)
T 1lrv_A 113 ------EVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP---------------PGR 150 (244)
T ss_dssp ------HHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC---------------GGG
T ss_pred ------HHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC---------------HHH
Confidence 7777777632 1 1235566788889999888762 21 124
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcC
Q 004992 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (720)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 333 (720)
+..+++++++.||..++.. +. -+.+..++.+.++.+|..++..+
T Consensus 151 l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l------------------ 194 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRL------------------ 194 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC------------------
T ss_pred HHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC------------------
Confidence 4567788899999777653 21 13455677888999998888652
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHH
Q 004992 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 401 (720)
Q Consensus 334 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L 401 (720)
..+.|..++.++++.||..++..+. .+.+..+ .++++.|+..+...|
T Consensus 195 ~~~~L~~Ll~D~d~~VR~~aa~~l~--------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 RGDDLLELLHDPDWTVRLAAVEHAS--------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp CGGGGGGGGGCSSHHHHHHHHHHSC--------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHcCC--------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1356777789999999999887742 2445556 888999998876544
No 132
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.10 E-value=0.002 Score=66.08 Aligned_cols=250 Identities=15% Similarity=0.090 Sum_probs=155.1
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-cChhhHHHHHHc--CChHHHHHHH-hccCCCc-cchhhh
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN--GALSHLVNLL-KRHMDSN-CSRAVN 179 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~--~~l~~L~~lL-~~~~~~~-~~~~~~ 179 (720)
..+.|+.-|-++.| ++|..|+.+|..+. ............ ...-.++-++ -+.-.+. .....-
T Consensus 175 fcE~L~~DLFdp~W------------EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVA 242 (800)
T 3oc3_A 175 FFEQISDNLLSYEW------------YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVA 242 (800)
T ss_dssp TTHHHHHHTTCSSH------------HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBC
T ss_pred HHHHHHHHhcCcch------------hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeee
Confidence 55666666677777 99999999999988 221100000001 1122222222 1211111 111223
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~ 259 (720)
.||+.|+.+|+.+ ..-+.. ..++..++..+..+.++++..++-.|..+. +--. . . .++++.++..|.
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~--DLL~-~--L-d~Vv~aVL~GL~ 309 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK--EFVE-D--K-DGLCRKLVSLLS 309 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG--GGCC-C--H-HHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH--HHHH-H--H-HHHHHHHHhhcC
Confidence 8999999999998 533332 234444555557888999999999999982 1111 1 2 347888899999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCC--hHHHHHHHHHHHHHhccCcchhhHHHhcCChHH
Q 004992 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (720)
Q Consensus 260 ~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 337 (720)
+.+++||..|+.+|.-++ .+.... .++..+.+.|.+-+ ..........|+.+++..... -.....+|.
T Consensus 310 D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPR 379 (800)
T 3oc3_A 310 SPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKD 379 (800)
T ss_dssp CSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGG
T ss_pred CcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHH
Confidence 999999999999999997 232222 24455555555432 222344555666766543221 112378999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHH-HHHHhcCCChhHHHHHHHHHH
Q 004992 338 LIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALY 402 (720)
Q Consensus 338 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~-l~~ll~~~~~~v~~~a~~~L~ 402 (720)
|...+++.-+.||.+++.+|..+.. ..++.. +.+++-.++.+++..+..+-.
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL~-------------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLSE-------------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCCC-------------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999999876663 112333 334556778888888877774
No 133
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.005 Score=60.14 Aligned_cols=192 Identities=10% Similarity=0.014 Sum_probs=125.1
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhccCcchh--hHHH--hcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcc
Q 004992 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCK--VHIV--QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMH 368 (720)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~--~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (720)
+| +-+-+.+.+|..|.+++..|..+....+... .... -....+.+-..+.+.+..++..++.++..++...+...
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 5677889999999999999988764322111 1111 12356677788899999999999999999987332221
Q ss_pred hhh---hhhhcCCHHHHHH-HhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHH
Q 004992 369 NQA---GIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 444 (720)
Q Consensus 369 ~~~---~l~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l 444 (720)
... ...-..+++.|+. .+.+....++..+..++..++.......
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------------------------------- 138 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------------------------------- 138 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH--------------------------------
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH--------------------------------
Confidence 111 1122334666664 4677888899888888877764332211
Q ss_pred HHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccc---hhhhccCcHHHHHHhhcCCCchhhhhHHHHHHHHHh
Q 004992 445 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR---TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 445 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~ 521 (720)
.+++.++..+.+.+|.++..++..|..+....... ....-..+++.+..++.+.+++||..|..++..+-+
T Consensus 139 ------~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 139 ------QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp ------HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 13344555677889999999988888875432111 001112345677888999999999999999999987
Q ss_pred hc
Q 004992 522 KA 523 (720)
Q Consensus 522 ~~ 523 (720)
..
T Consensus 213 ~~ 214 (278)
T 4ffb_C 213 VT 214 (278)
T ss_dssp C-
T ss_pred Hh
Confidence 54
No 134
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.01 E-value=0.024 Score=53.81 Aligned_cols=177 Identities=12% Similarity=0.073 Sum_probs=123.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHH----hhcCCCHHHHHHHHHHHHHhhc----CCc
Q 004992 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL----MLRSEDSAIHYEAVGVIGNLVH----SSP 281 (720)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~----ll~~~~~~v~~~a~~~L~nL~~----~~~ 281 (720)
+.+...+-+.+..-+..++..|...... +...+.. .+..+++ .+.+.+..+...++.+|..+.. ...
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~---~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADT---SPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHH---CHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhh---ChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556666677888888888888776532 2233332 2444444 3347788888888888877742 111
Q ss_pred chHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 004992 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (720)
Q Consensus 282 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (720)
..... ...-++|.|+.-+-++...+|..+-.++..++...+. ..+.+.++..+++.++.+|..++..+..+.
T Consensus 124 ~~~~~-ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 124 PMSQE-EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCCHH-HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchHH-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 11111 1123789999999888888988888887777542211 235677888889999999999999999999
Q ss_pred hhhcCcchhhhhhhcCCH---HHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 362 QVITDMHNQAGIAHNGGL---VPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 362 ~~~~~~~~~~~l~~~~~i---~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
...|.. ...++ +.+.+++.++|..||..|+.++..+-.
T Consensus 196 ~~~G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 196 TNAGIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHCSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HhcCCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 854433 13467 999999999999999999999987754
No 135
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.95 E-value=0.037 Score=53.58 Aligned_cols=206 Identities=12% Similarity=0.080 Sum_probs=150.9
Q ss_pred HHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch----HHHHHHcCChHHHHHhhcc-CChHHHHHHHHHHHHH
Q 004992 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI----KKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQF 318 (720)
Q Consensus 244 ~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~----~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l 318 (720)
.+...+.+..|+..|..=+-+.|+.+..+..++....... ...+.. -...+..++.. .++++...+...|..+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 3445678999999998889999999999999997654432 122222 23333333332 2467777777788877
Q ss_pred hccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcC---CHHHHHHHhcCCChhHHH
Q 004992 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNG---GLVPLLKLLDSKNGSLQH 395 (720)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~---~i~~l~~ll~~~~~~v~~ 395 (720)
.. .+.....+...+.+..+.+++..++.++..-|..++..+.. ++......+...+ +....-+++.++|+-.++
T Consensus 151 ir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt--~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 151 IR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLT--RHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHH--SSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHh--ccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 65 45666677777888899999999999999999999998877 2333333444433 356677788999999999
Q ss_pred HHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHH
Q 004992 396 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 475 (720)
Q Consensus 396 ~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 475 (720)
.++..|+.|-.++.+...+.. .+-+..-+..+..++++++..+|..|..++
T Consensus 228 QSlKLLgelLldr~N~~vM~~-----------------------------Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVF 278 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTK-----------------------------YISKPENLKLMMNLLRDKSRNIQFEAFHVF 278 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHH-----------------------------HTTCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHH-----------------------------HhCCHHHHHHHHHHhcCchhchhhhhhhhe
Confidence 999999999888777555444 122345667788899999999999999999
Q ss_pred HhhcCCcc
Q 004992 476 AHLCSPDD 483 (720)
Q Consensus 476 ~~l~~~~~ 483 (720)
--+..++.
T Consensus 279 KvFVANP~ 286 (341)
T 1upk_A 279 KVFVANPN 286 (341)
T ss_dssp HHHHHCSS
T ss_pred eeeeeCCC
Confidence 88876665
No 136
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.91 E-value=0.004 Score=63.93 Aligned_cols=243 Identities=14% Similarity=0.094 Sum_probs=147.4
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccCChh--cHHHHHhCCCHHHHHHhh-cC------CC---HHHHHHHHHHHHH
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILML-RS------ED---SAIHYEAVGVIGN 275 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~--~~~~i~~~g~l~~L~~ll-~~------~~---~~v~~~a~~~L~n 275 (720)
+...|+.-|-++.+++|--|+.+|+.+...... .+....+..+.-.++.++ -| +| ..||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 456677777789999999999999988853221 111000112222333322 11 11 3789999999998
Q ss_pred hhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHH
Q 004992 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF 355 (720)
Q Consensus 276 L~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~ 355 (720)
+ ..-+.. ..++..++..+....|+++..++-.|..+. +.... -.++++.++..|.+.+.+||..|+.
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~----DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK----EFVED--KDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG----GGCCC--HHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH----HHHHH--HHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 544432 334455555557778999999998888882 11111 2456788888889999999999999
Q ss_pred HHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcC-CCh-hHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhh
Q 004992 356 ALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDS-KNG-SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 433 (720)
Q Consensus 356 ~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~-~~~-~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~ 433 (720)
+|.-++. .... ..++..+-+.|.+ ++- .-.......|..|+..+... .
T Consensus 322 tLiPIA~---p~~l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a------~--------------- 371 (800)
T 3oc3_A 322 LLCHFPI---TDSL------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL------S--------------- 371 (800)
T ss_dssp HHTTSCC---SSTH------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC------C---------------
T ss_pred Hhhhhcc---hhhH------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc------c---------------
Confidence 9987773 1110 1123333333322 111 11223344555554433210 0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHH-HHhhcCCCchhhhhH
Q 004992 434 KDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELL-LGLLGSTNPKQQLDG 512 (720)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L-~~ll~~~~~~v~~~a 512 (720)
..+..+|+|..+++++-+.||..++.+|..+. ....++.+ .+++-..+++++..+
T Consensus 372 --------------~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS 427 (800)
T 3oc3_A 372 --------------IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMA 427 (800)
T ss_dssp --------------CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred --------------cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHH
Confidence 01246778888999999999999999998887 11223333 356777888888877
Q ss_pred HHHHH
Q 004992 513 AVALF 517 (720)
Q Consensus 513 ~~aL~ 517 (720)
..+..
T Consensus 428 ~~VWk 432 (800)
T 3oc3_A 428 IKLLK 432 (800)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77663
No 137
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.88 E-value=0.033 Score=51.42 Aligned_cols=177 Identities=14% Similarity=0.188 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHcC
Q 004992 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (720)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~ 157 (720)
...|+..|..++.+|+.|..+.++.+.-.|..+|...+... +++ -+|..++.+++.|. ++++...-+...+
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r------~fE-~LRLtsLGVIgaLvK~dd~eVi~fLL~tE 145 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTR------PFE-YLRLTSLGVIGALVKTDEQEVINFLLTTE 145 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSH------HHH-HHHHHHHHHHHHHGGGCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCC------cch-hhhhhHHHHHHHHhccCcHHHHHHHHhhh
Confidence 56677778888989999999999998888899998776531 222 68999999999999 7888888888999
Q ss_pred ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHH--------hcCCcHH-HHHhhcCCCHHHHHHHH
Q 004992 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR--------MEGGIPP-LVELLEFTDTKVQRAAA 228 (720)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--------~~~~i~~-L~~ll~~~~~~v~~~a~ 228 (720)
++|..++.++..+. --+..|..++..+..++... ..+. -...+.. +..+.+++++.+.+...
T Consensus 146 iiplCLrime~Gse--------lSKtvAtfIlqKIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhii 216 (268)
T 2fv2_A 146 IIPLCLRIMESGSE--------LSKTVATFILQKILLDDTGL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVV 216 (268)
T ss_dssp HHHHHHHHHHHSCH--------HHHHHHHHHHHHHHHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHhhccH--------HHHHHHHHHHHHHhccchhH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 99999999998876 66677777777777533221 1111 1112222 23445678999999999
Q ss_pred HHHHHhccCChhcHHHHHhCCCHHH------HHHhhcCCCHHHHHHHHHHHHHh
Q 004992 229 GALRTLAFKNDENKNQIVECNALPT------LILMLRSEDSAIHYEAVGVIGNL 276 (720)
Q Consensus 229 ~~L~~L~~~~~~~~~~i~~~g~l~~------L~~ll~~~~~~v~~~a~~~L~nL 276 (720)
++...|+. ++..++.+.+. +|. +..++ .+|+.++.+-...+.|+
T Consensus 217 rcYlRLsd-n~rar~aL~~~--LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 217 RCYLRLSD-NPRAREALRQC--LPDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHHTT-SHHHHHHHHHH--SCGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhc-CHHHHHHHHHh--CcHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence 99999996 88887777652 221 12223 35788888877777776
No 138
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.80 E-value=0.027 Score=54.56 Aligned_cols=204 Identities=13% Similarity=0.145 Sum_probs=149.7
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchh----hHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHH
Q 004992 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK----VHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGR 359 (720)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~ 359 (720)
+.+...+.+..|+..+..=+.+.|+.++.+..++.......+ ..+.. -...+..++.. .++++.-.+...|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 556677899999999998899999999999999986443322 22222 12333333332 466777778888888
Q ss_pred HhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcc-cCCCchhHHHhhcccccccchhhhhhhhHHHHH
Q 004992 360 LAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA 438 (720)
Q Consensus 360 l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~ 438 (720)
+.. ++.....+...+.+..+.+.+..++-++...|..++.-+- .+..-...++..+
T Consensus 150 cir---~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~n-------------------- 206 (341)
T 1upk_A 150 CIR---HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH-------------------- 206 (341)
T ss_dssp HHT---SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT--------------------
T ss_pred HHH---hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHh--------------------
Confidence 887 7777777777778888999999999999999999988883 3433322332221
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhh----ccCcHHHHHHhhcCCCchhhhhHHH
Q 004992 439 KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI----DGGGLELLLGLLGSTNPKQQLDGAV 514 (720)
Q Consensus 439 ~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~----~~~~~~~L~~ll~~~~~~v~~~a~~ 514 (720)
-..+...+-.++.+++.-+|+++++.|+.+..+..+..+|. +..-+..+..+++++...+|..|-.
T Consensus 207 ----------yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFh 276 (341)
T 1upk_A 207 ----------YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFH 276 (341)
T ss_dssp ----------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhh
Confidence 12366677789999999999999999999988877655443 3345788889999999999999998
Q ss_pred HHHHHHhhc
Q 004992 515 ALFKLANKA 523 (720)
Q Consensus 515 aL~~L~~~~ 523 (720)
.+--..-++
T Consensus 277 VFKvFVANP 285 (341)
T 1upk_A 277 VFKVFVANP 285 (341)
T ss_dssp HHHHHHHCS
T ss_pred heeeeeeCC
Confidence 887776543
No 139
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.80 E-value=0.007 Score=57.43 Aligned_cols=182 Identities=10% Similarity=-0.004 Sum_probs=123.5
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHh----cCCCHHHHHHHHHHHHHHhhhhcCcch
Q 004992 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML----QSPDVQLREMSAFALGRLAQVITDMHN 369 (720)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (720)
+.+...+-+.++.-+..++..|......++ ..+. ..+..++.|+ .+.++.+...++.+|..+....+....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 345555666778888888887776654222 2222 1344455554 478999999999999887652211111
Q ss_pred hhh-hhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhh
Q 004992 370 QAG-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 448 (720)
Q Consensus 370 ~~~-l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (720)
+-. -...-++|.|+.-+.+....+|..+..++..+....+
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--------------------------------------- 164 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--------------------------------------- 164 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC---------------------------------------
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC---------------------------------------
Confidence 111 1123468889998888889999988888877653110
Q ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcH---HHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 449 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL---ELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 449 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~---~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
...+++.++.-+++.+..+|..++..+..+....-.. ..+++ +.+..++.++|..||..|..++..+-.+.
T Consensus 165 ~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 165 PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 1235667777788889999999999888885432211 13467 99999999999999999999998777654
No 140
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.61 E-value=0.078 Score=48.98 Aligned_cols=223 Identities=11% Similarity=0.122 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhc-cChhhHHHHHHc-CChHHHHHHHhccC----CCccchhhhHHHHHHHHHHHHhhhcCchhhHHHH
Q 004992 131 EVEKGSAFALGLLA-VKPEHQQLIVDN-GALSHLVNLLKRHM----DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (720)
Q Consensus 131 ~v~~~a~~~L~~L~-~~~~~~~~~~~~-~~l~~L~~lL~~~~----~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 204 (720)
+-|+.|+.-|+.=- ..++....+=.+ |.+..|++=+-+.. ++.-......=..+|+..|..+++ +++.|..+.
T Consensus 16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~Fl 94 (268)
T 2fv2_A 16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSAFL 94 (268)
T ss_dssp TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHHHH
T ss_pred hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhHHH
Confidence 44666665555533 234443333322 44444443332211 111111122444667777777887 888999999
Q ss_pred hcCCcHHHHHhhcCCC-----HHHHHHHHHHHHHhcc-CChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 004992 205 MEGGIPPLVELLEFTD-----TKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 205 ~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~~L~~-~~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~ 278 (720)
...+.-.|..+|+..+ +.+|..++++++.|.. ++++....+.+++++|..++.+..++.-.+.-|..++..+..
T Consensus 95 ~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 95 AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 9988888888887654 6899999999999996 345556667789999999999999999889889999988865
Q ss_pred CCcchHHHHHH--------cCChH-HHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHh-------cCChHHHHHHh
Q 004992 279 SSPNIKKEVLA--------AGALQ-PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-------RGAVRPLIEML 342 (720)
Q Consensus 279 ~~~~~~~~~~~--------~~~l~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~~~~~L~~ll 342 (720)
++... ..+.. ..++. .+..+.+++++++.+++.++-..++. ++..+..+.. .|.+. ..+
T Consensus 175 dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~~~LP~~Lrd~tf~---~~l 249 (268)
T 2fv2_A 175 DDTGL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREALRQCLPDQLKDTTFA---QVL 249 (268)
T ss_dssp SHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHHHHSCGGGTSSTTH---HHH
T ss_pred cchhH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHHhCcHHhhChHHH---HHH
Confidence 43321 22111 11222 22234456788888999988888864 4444443332 11111 222
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 004992 343 QSPDVQLREMSAFALGRL 360 (720)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l 360 (720)
.+|+.++..-...+.|+
T Consensus 250 -~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 250 -KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp -TSCHHHHHHHHHHHHHS
T ss_pred -hcCHHHHHHHHHHHHhc
Confidence 24666676666666554
No 141
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.35 E-value=0.073 Score=61.74 Aligned_cols=141 Identities=11% Similarity=0.024 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC-----CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHH
Q 004992 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (720)
Q Consensus 178 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~ 252 (720)
.|..++.++++++.++.+..+....-.-..+++.|+.++.+ +...++..++++++..+.--..+. ..... ++.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-~~L~~-vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLRT-VIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-HHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-HHHHH-HHH
Confidence 47999999999999997554432222223566778887753 334566678899998774111122 22222 567
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHH------cCChHHHHH----hhccCChHHHHHHHHHHHHHhccC
Q 004992 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIG----LLSSCCSESQREAALLLGQFAATD 322 (720)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~------~~~l~~L~~----ll~~~~~~~~~~a~~~L~~l~~~~ 322 (720)
.|+..+.++++.++..|++++.+|+.. .+..+.. ...++.++. ....-+...+..+..+++.+....
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 777777788899999999999999843 2333321 123343333 333345667778888888887643
Q ss_pred c
Q 004992 323 S 323 (720)
Q Consensus 323 ~ 323 (720)
+
T Consensus 621 ~ 621 (1023)
T 4hat_C 621 R 621 (1023)
T ss_dssp C
T ss_pred C
Confidence 3
No 142
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=96.19 E-value=0.02 Score=47.25 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=66.2
Q ss_pred ceEEEEECCeEEehhHHHHhhcchhHhhcccC--C--cCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChh-hHHHHH
Q 004992 553 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDG--G--YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLL 627 (720)
Q Consensus 553 ~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~--~--~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll 627 (720)
.-|.+.++|..|...+..|..... .++.. . +.....+.+-+ |=++..|+.+|.|+-+|++.++.+ .+..++
T Consensus 13 ~~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~ 88 (124)
T 1s1g_A 13 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYD 88 (124)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred CEEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 458889999999999999986543 23322 1 11223445665 569999999999999999987654 478899
Q ss_pred HHHhhhChHHHH--HHHHHHHH
Q 004992 628 RAADQYLLEGLK--RLCEYTIA 647 (720)
Q Consensus 628 ~~A~~~~~~~l~--~~c~~~l~ 647 (720)
.-|++|+|+.+. ..|...+.
T Consensus 89 ~Ea~fy~i~~l~l~~cC~~~~~ 110 (124)
T 1s1g_A 89 DELAFYGILPEIIGDCCYEEYK 110 (124)
T ss_dssp HHHHHTTCCGGGBCHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHH
Confidence 999999999873 44544443
No 143
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.82 E-value=0.05 Score=49.90 Aligned_cols=144 Identities=15% Similarity=0.106 Sum_probs=101.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHH-hhccCChHHHHHHHHHHHHHhc-cCcchhh
Q 004992 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAA-TDSDCKV 327 (720)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 327 (720)
.++....+.+++..++|..|+.+|+.+ . +. ...++.+.. +..+.+|.++..++.++..++. .+++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~-------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD-------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS-------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc-------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 456666777788889999999988877 2 11 125677776 5667899999999999999884 3333
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccC
Q 004992 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 407 (720)
Q Consensus 328 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (720)
..++.+..+..++++.+|..|...+.-.+. .+..+.. ..-+++.+..+..+++.-||....+.|..++..
T Consensus 139 -----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~---~~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -----KALPIIDEWLKSSNLHTRRAATEGLRIWTN---RPYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGG---STTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhc---cchhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 257889999999999999999988765444 1111110 111345555566788889999999999999874
Q ss_pred -CCchhHHHh
Q 004992 408 -EDNVADFIR 416 (720)
Q Consensus 408 -~~~~~~l~~ 416 (720)
|+-...+++
T Consensus 209 ~Pd~V~~~~~ 218 (240)
T 3l9t_A 209 FPDLVKIELK 218 (240)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 444444444
No 144
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.77 E-value=0.42 Score=55.40 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCC-----ChhHHHHHHHHHHhcccCCCchhHHHhhcc
Q 004992 345 PDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSK-----NGSLQHNAAFALYGLADNEDNVADFIRVGG 419 (720)
Q Consensus 345 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 419 (720)
.++...++++++++.++.. -.+....-.=..+++.|+.+...+ .+.++..++++++..++.-.....+
T Consensus 491 ~sW~~lea~~~aigaIag~--~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~----- 563 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGA--MHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKF----- 563 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTS--SCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH-----
T ss_pred CCHHHHhHHHHHHHHHHCc--CCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHH-----
Confidence 5689999999999999861 221111111123455566665443 2345556678888776532111111
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCc
Q 004992 420 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 482 (720)
Q Consensus 420 v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 482 (720)
-..++..|++.+.+.++.|+..|+.++..+|..-
T Consensus 564 -----------------------------L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C 597 (1073)
T 3gjx_A 564 -----------------------------LKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKC 597 (1073)
T ss_dssp -----------------------------HHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHT
T ss_pred -----------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 1235667778888889999999999999997653
No 145
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.74 E-value=0.0084 Score=48.79 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=70.0
Q ss_pred eEEEEECCeEEehhHHHHhhcch-hHhhcccCCc-CCCCCCceecCCCCHHHHHHHHHHHhcCCcccChh-hHHHHHHHH
Q 004992 554 DVTFLVEGRRFYAHRICLLASSD-AFRAMFDGGY-REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRAA 630 (720)
Q Consensus 554 Dv~~~~~~~~~~~h~~iL~~~s~-~f~~~~~~~~-~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll~~A 630 (720)
-|.+.++|..|...+..|..... ++..|+.+.. .....+.+-+ |=++..|+.+|.|+.+|++.++.+ ....++.-|
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea 84 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL 84 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence 47889999999999999987654 4566665421 1223455666 568999999999999999987653 467899999
Q ss_pred hhhChHHHH--HHHHHHHHhcC
Q 004992 631 DQYLLEGLK--RLCEYTIAQDI 650 (720)
Q Consensus 631 ~~~~~~~l~--~~c~~~l~~~i 650 (720)
++|+|+... ..|...+.++-
T Consensus 85 ~fy~i~~~~l~~CC~~~~~~~~ 106 (115)
T 3kvt_A 85 EFWGLDSNQVEPCCWMTYTAHR 106 (115)
T ss_dssp HHHTCCGGGBCGGGSHHHHSCC
T ss_pred HHhCCChHHHHHHHHHHHHhcc
Confidence 999998754 33545554443
No 146
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.68 E-value=0.62 Score=55.40 Aligned_cols=257 Identities=13% Similarity=0.087 Sum_probs=139.0
Q ss_pred HhHHHHHHHHHHHHHHcc------ChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cC
Q 004992 75 ADRAAAKRATHVLAELAK------NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VK 146 (720)
Q Consensus 75 ~d~~~~~~a~~~L~~l~~------~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~ 146 (720)
.+..+|..|+..|.+... +++.+..+.+ .++..+......... .++.++.+.+.++..++ +.
T Consensus 59 ~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-~ll~~l~~~~~~~~~---------~~~~vr~kla~~la~Ia~~d~ 128 (1204)
T 3a6p_A 59 QVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-SVMELIANGTLNILE---------EENHIKDALSRIVVEMIKREW 128 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH-HHHHHHHHSSCCTTS---------SCHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-HHHHHHHhhcccccc---------ccHHHHHHHHHHHHHHHHHhC
Confidence 466789999999998753 2344444432 233333332111000 12389999999999998 33
Q ss_pred hhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcC------chhhH-----HHHhc--CCcHHHH
Q 004992 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN------SSIKT-----RVRME--GGIPPLV 213 (720)
Q Consensus 147 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~------~~~~~-----~~~~~--~~i~~L~ 213 (720)
|+. ..++++.++.++..+ . .....++.+|..++... ...+. .+... .+++.+.
T Consensus 129 p~~-----Wp~ll~~L~~~~~~~-~--------~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~ 194 (1204)
T 3a6p_A 129 PQH-----WPDMLIELDTLSKQG-E--------TQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLL 194 (1204)
T ss_dssp TTT-----CTTHHHHHHHHHHTC-H--------HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccc-----chHHHHHHHHHhcCC-H--------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 421 346778888888652 2 45677888888887531 11111 11111 1122223
Q ss_pred HhhcC-------------------CCHHHHHHHHHHHHHhccCChhcHHHHHhCC--CHHHHHHhhcCCCHHHHHHHHHH
Q 004992 214 ELLEF-------------------TDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAVGV 272 (720)
Q Consensus 214 ~ll~~-------------------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g--~l~~L~~ll~~~~~~v~~~a~~~ 272 (720)
.++.+ .+..++..++.++.+... -.....+.+.. .++.+..++. +++++..|+.+
T Consensus 195 ~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~--Wi~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ec 270 (1204)
T 3a6p_A 195 NTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID--WVSMSHITAENCKLLEILCLLLN--EQELQLGAAEC 270 (1204)
T ss_dssp HHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT--TSCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh--ccCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHH
Confidence 33322 124566777777776553 12222333332 6777777765 46789999999
Q ss_pred HHHhhcCCc--chHHHHHH---cCChHHHHHhhc--------cCChHHHHHHHHHHHHHhccCcchhhHHH---------
Q 004992 273 IGNLVHSSP--NIKKEVLA---AGALQPVIGLLS--------SCCSESQREAALLLGQFAATDSDCKVHIV--------- 330 (720)
Q Consensus 273 L~nL~~~~~--~~~~~~~~---~~~l~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------- 330 (720)
|..+..... .....++. ...+..++..+. +.+.+..+..+..+..+.. .....+.
T Consensus 271 L~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~ 347 (1204)
T 3a6p_A 271 LLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPS 347 (1204)
T ss_dssp HHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCT
T ss_pred HHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChh
Confidence 999986432 11111111 011234444432 1134566666766666652 1111010
Q ss_pred -hcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 331 -QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 331 -~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
-.++++.++.++.+++..+...++..-..+..
T Consensus 348 ~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 348 NFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp THHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 02457778888888888887777776665665
No 147
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=95.52 E-value=0.017 Score=46.26 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=59.8
Q ss_pred EEEEECCeEEehhHHHHhhcchhHhhcccCC----cCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChh-hHHHHHHH
Q 004992 555 VTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRA 629 (720)
Q Consensus 555 v~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll~~ 629 (720)
|.+.++|..|...+..|..... +++... +.....+.+-+ |=++..|+.+|.|+-+|++.++.+ .+..+..-
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E 77 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 6788999999999999986543 233221 11123345555 568999999999999999987654 36889999
Q ss_pred HhhhChHHH
Q 004992 630 ADQYLLEGL 638 (720)
Q Consensus 630 A~~~~~~~l 638 (720)
|++|+++.+
T Consensus 78 a~fy~i~~l 86 (105)
T 1nn7_A 78 LAFFGLIPE 86 (105)
T ss_dssp HHHHTCCSC
T ss_pred HHHcCCCHH
Confidence 999999886
No 148
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=95.44 E-value=0.041 Score=46.40 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=63.2
Q ss_pred CcceEEEEECCeEEehhHHHHhhcchhHhhcccCC----cCCCCCCceecCCCCHHHHHHHHHHHhcCCcccChh-hHHH
Q 004992 551 TLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQD 625 (720)
Q Consensus 551 ~~~Dv~~~~~~~~~~~h~~iL~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ 625 (720)
...-|.+.++|..|...+..|..... .++... +.....+.+-+ |=++..|+.+|+|+-+|++.++.+ .+..
T Consensus 33 ~~~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~ 108 (140)
T 2nz0_B 33 QDELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISA 108 (140)
T ss_dssp CCCEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHH
T ss_pred CCCEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHH
Confidence 44568899999999999999986543 233221 11123445665 569999999999999999987654 3788
Q ss_pred HHHHHhhhChHHH
Q 004992 626 LLRAADQYLLEGL 638 (720)
Q Consensus 626 ll~~A~~~~~~~l 638 (720)
++.-|++|+|+.+
T Consensus 109 l~eEa~fy~i~~l 121 (140)
T 2nz0_B 109 YDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHTCCGG
T ss_pred HHHHHHHcCCChH
Confidence 9999999999887
No 149
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.36 E-value=0.19 Score=46.04 Aligned_cols=143 Identities=14% Similarity=0.093 Sum_probs=96.8
Q ss_pred HHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHH-hhcCCCCcccccCCCcchHHHHHHHHH
Q 004992 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK-HLQAPPTSEADRNLKPFEHEVEKGSAF 138 (720)
Q Consensus 60 ~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (720)
..+...|.+. +++ ++|..|+..|+.+ .. . ...++.+.. +-.+.++ .|++.++.
T Consensus 73 ~~la~~L~~~----~~d-eVR~~Av~lLg~~-~~-~-------~~~L~~ir~~va~D~~W------------rVre~lA~ 126 (240)
T 3l9t_A 73 KKLAFLAYQS----DVY-QVRMYAVFLFGYL-SK-D-------KEILIFMRDEVSKDNNW------------RVQEVLAK 126 (240)
T ss_dssp HHHHHHHHTC----SSH-HHHHHHHHHHHHT-TT-S-------HHHHHHHHHTGGGCSCH------------HHHHHHHH
T ss_pred HHHHHHHHhC----cch-HHHHHHHHHHHhc-cC-c-------HHHHHHHHHHhCCCCCc------------cHHHHHHH
Confidence 3444445544 344 4899999988876 21 1 114455555 4455666 99999999
Q ss_pred HHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhh
Q 004992 139 ALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (720)
Q Consensus 139 ~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 216 (720)
++..++ .+|+. .++.+...+++++. .+++.|...+.-.+.. +..+. .-.-+++.|-.+.
T Consensus 127 a~~~~~~~~~pe~--------~l~~~~~W~~d~n~--------~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~ 187 (240)
T 3l9t_A 127 AFDEFCKKIEYKK--------ALPIIDEWLKSSNL--------HTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLK 187 (240)
T ss_dssp HHHHHHHHHCTTT--------THHHHHHHHHCSSH--------HHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTT
T ss_pred HHHHHHHhcCHHH--------HHHHHHHHhcCCCH--------HHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhc
Confidence 999988 34432 56788888888777 9999998887654432 11110 0012456667777
Q ss_pred cCCCHHHHHHHHHHHHHhccCChhcHHHHHh
Q 004992 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (720)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~ 247 (720)
.+++.-|+.+..+.|..++..+|+-...+++
T Consensus 188 ~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 188 EDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 8899999999999999999988877666554
No 150
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.16 E-value=6.4 Score=45.61 Aligned_cols=298 Identities=11% Similarity=0.046 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHH-HHhhcCCCHHHHHHHHHHHHHhccCCh-hcHHHHHh--CCCHHHHH
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPL-VELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVE--CNALPTLI 255 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~--~g~l~~L~ 255 (720)
++...++.+|..+...-+- ..+...+.++.+ ..++. ++.++..|+.+|..+..... .....+.. .+++..+-
T Consensus 222 ~lv~~~L~~L~~~~sWI~i--~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~ 297 (1073)
T 3gjx_A 222 PLVHATLETLLRFLNWIPL--GYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLK 297 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCH--HHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 7778888999988875543 346677888877 46664 57899999999999886322 21222211 11121111
Q ss_pred Hhh-------------cCCCHHHHHHHHHHHHHhhcCCcchHHHHHHc-C-------ChHHHHHhhccCChHHHHHHHHH
Q 004992 256 LML-------------RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-G-------ALQPVIGLLSSCCSESQREAALL 314 (720)
Q Consensus 256 ~ll-------------~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~-~-------~l~~L~~ll~~~~~~~~~~a~~~ 314 (720)
.++ .+++.+.....+..+..+... ....+... + ++..++.+...++.++.+.+...
T Consensus 298 ~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~f 374 (1073)
T 3gjx_A 298 QMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEY 374 (1073)
T ss_dssp HHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 111 122334444455555555321 11222111 1 23334444456667776666654
Q ss_pred HHHHhc----cCc-----c------------hhhHHHh---cCChHHHHHHhcCCC--------------------H--H
Q 004992 315 LGQFAA----TDS-----D------------CKVHIVQ---RGAVRPLIEMLQSPD--------------------V--Q 348 (720)
Q Consensus 315 L~~l~~----~~~-----~------------~~~~~~~---~~~~~~L~~ll~~~~--------------------~--~ 348 (720)
-..+.. ..+ . .+..+.. ..+...++.-+..++ . .
T Consensus 375 W~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ 454 (1073)
T 3gjx_A 375 WNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSIN 454 (1073)
T ss_dssp HHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHH
T ss_pred HHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHH
Confidence 333331 110 0 0110100 011222222222111 0 1
Q ss_pred HHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc--CCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccch
Q 004992 349 LREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD--SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 426 (720)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~ 426 (720)
.....-.+|..++.. +...... -..+.+.+.+. ..++.....++|+++.++.....- .+
T Consensus 455 ly~~mrd~L~~lt~l--~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~---~E---------- 515 (1073)
T 3gjx_A 455 LYKNMRETLVYLTHL--DYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEE---DE---------- 515 (1073)
T ss_dssp HHHHHHHHHHHHHHH--CHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHH---HH----------
T ss_pred HHHHHHHHHHHHhcC--CHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcc---cc----------
Confidence 111222233333320 0011100 12333444443 246889999999999998543210 01
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc-----chhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhh
Q 004992 427 EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-----EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 501 (720)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll 501 (720)
..+-..+++.|+.+...+ .+.++...+.+++..+..-.....+. .-.+..|.+.+
T Consensus 516 -------------------~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L-~~vl~~L~~~m 575 (1073)
T 3gjx_A 516 -------------------KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL-KTVVNKLFEFM 575 (1073)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHT
T ss_pred -------------------cchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH-HHHHHHHHHHH
Confidence 011123566667666544 23344445567777655433222221 23466777777
Q ss_pred cCCCchhhhhHHHHHHHHHhhc
Q 004992 502 GSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 502 ~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
.++++.||..|+.++..++.+-
T Consensus 576 ~~~~~~vq~aA~~af~~i~~~C 597 (1073)
T 3gjx_A 576 HETHDGVQDMACDTFIKIAQKC 597 (1073)
T ss_dssp TCCSTTHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999764
No 151
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.84 E-value=4 Score=41.64 Aligned_cols=162 Identities=13% Similarity=0.110 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHccC-hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHH
Q 004992 76 DRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (720)
Q Consensus 76 d~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 154 (720)
+...+..|+..+.....+ |+..+. ++..+++|+++.+. .||.+|.+.|..+|.+ +....
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~------------~IR~qaik~Lp~~ck~-~~i~k-- 100 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDV------------SIRRQAIKELPQFATG-ENLPR-- 100 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSH------------HHHHHHHHHGGGGCCT-TCHHH--
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH------------HHHHHHHHhhHHHhhh-hhhhh--
Confidence 345789999999998885 876665 56789999999887 8999999999999954 44333
Q ss_pred HcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (720)
Q Consensus 155 ~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (720)
+...|+++|...+. .-...+-..|..+...++. +.+..++..+..+++.+|+.++..|..-
T Consensus 101 ---iaDvL~QlLqtdd~--------~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 101 ---VADILTQLLQTDDS--------AEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp ---HHHHHHHHTTCCCH--------HHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhccch--------HHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 35788899986655 4445555666666654542 2344555555456789999888887644
Q ss_pred ccC--ChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 004992 235 AFK--NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 235 ~~~--~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~ 277 (720)
... .......+- .-++..+.+.|.+-+.+--.....+|..+-
T Consensus 162 l~~l~~~~l~~E~E-~~i~~~ikK~L~DVT~~EF~L~m~lL~~lk 205 (507)
T 3u0r_A 162 LKTLPDEVLTKEVE-ELILTESKKVLEDVTGEEFVLFMKILSGLK 205 (507)
T ss_dssp GGGSCTTTSCHHHH-HHHHHHHHHHTTSCCHHHHHHHHHHHHTSG
T ss_pred HhhcchhhccHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHhcc
Confidence 321 111112222 224556667776666555455566665554
No 152
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.40 E-value=0.73 Score=44.80 Aligned_cols=178 Identities=11% Similarity=0.062 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHH-HHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhc--C
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--G 207 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~ 207 (720)
+.+.-++..+.-++-+|.....+...+.-..++. ++..-.+.... .-+..+++++.|+.. ++..+..+... .
T Consensus 117 ~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p----~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~ 191 (304)
T 3ebb_A 117 DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKP----ANQLLALRTFCNCFV-GQAGQKLMMSQRES 191 (304)
T ss_dssp TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCH----HHHHHHHHHHHHGGG-SHHHHHHHHHTHHH
T ss_pred HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCCh----HHHHHHHHHHHHccC-CchhHHHHHHHHHH
Confidence 3455667777666666666655554333333442 32221111111 447889999999987 55555554432 2
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccCChh--cHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcchH
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIK 284 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~--~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~~~ 284 (720)
+++.+...+.+++..++.+++..+.|++..... ..+.. ..++..+..++.. .+.+....++-+|++|........
T Consensus 192 il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~ 269 (304)
T 3ebb_A 192 LMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAV 269 (304)
T ss_dssp HHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHH
Confidence 334444455567899999999999999952111 00111 1134455555543 577899999999999987655443
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHHHHHHH
Q 004992 285 KEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (720)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 315 (720)
+....-|.-..+-.......+.-..+++..+
T Consensus 270 ~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 270 QLAKSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp HHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3333334444444444432333333344433
No 153
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=94.21 E-value=0.074 Score=41.91 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=60.8
Q ss_pred EEEEECCeEEehhHHHHhhcch-hHhhcccC-CcCCCCCCceecCCCCHHHHHHHHHHHhc-CCcccChh-hHHHHHHHH
Q 004992 555 VTFLVEGRRFYAHRICLLASSD-AFRAMFDG-GYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQDLLRAA 630 (720)
Q Consensus 555 v~~~~~~~~~~~h~~iL~~~s~-~f~~~~~~-~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~~~~-~~~~ll~~A 630 (720)
|.+.++|..|...+..|..... .+.+|+.. .......+.+-+ |=++..|+.+|.|+-+ |++.++.+ .+..+..-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 6788999999999999975432 23333321 111223456666 5689999999999998 89886544 467899999
Q ss_pred hhhChHHHH
Q 004992 631 DQYLLEGLK 639 (720)
Q Consensus 631 ~~~~~~~l~ 639 (720)
++|+++.+.
T Consensus 82 ~fy~i~~~~ 90 (100)
T 1t1d_A 82 KFYELGENA 90 (100)
T ss_dssp HHTTCCHHH
T ss_pred HHcCCCHHH
Confidence 999998754
No 154
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.20 E-value=0.74 Score=44.78 Aligned_cols=133 Identities=12% Similarity=0.057 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHhccCChhcHHHHHhC--CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc--hHHHHHHcCChH
Q 004992 219 TDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKKEVLAAGALQ 294 (720)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~--g~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~--~~~~~~~~~~l~ 294 (720)
..+..+..++++++|+-. ++..++.+... .+++.+...+.+.+..++..+..++.|++...-. .... ...++.
T Consensus 160 ~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~ 236 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLS 236 (304)
T ss_dssp SCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHH
T ss_pred CChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHH
Confidence 346678899999999997 67777766642 2455555566667889999999999999843110 0011 111444
Q ss_pred HHHHhhcc-CChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHH
Q 004992 295 PVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSA 354 (720)
Q Consensus 295 ~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~ 354 (720)
.+..++.. .+.+....++.+|+++...+.+........+....+-+.... ..++|.+.+-
T Consensus 237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~ 298 (304)
T 3ebb_A 237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCR 298 (304)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHH
Confidence 45555543 467888999999999987544433333233443333333333 3455555443
No 155
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.22 E-value=8 Score=39.49 Aligned_cols=160 Identities=17% Similarity=0.112 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc
Q 004992 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (720)
Q Consensus 180 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~ 259 (720)
..++.|+..+..+...-|..++. .+..++.++.+.+..||..|.+.|..+|.+ ++. ..+..+|+.+|.
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i-----~kiaDvL~QlLq 110 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL-----PRVADILTQLLQ 110 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH-----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh-----hhHHHHHHHHHh
Confidence 88899999999999888877654 468999999999999999999999999974 442 235778999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcc-CcchhhHHHhcCChHHH
Q 004992 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPL 338 (720)
Q Consensus 260 ~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L 338 (720)
.+++.....+-.+|..+...++. +.+..+..-+..++..+|..++..|..-... ..+....-.+.-++..+
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~i 182 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTES 182 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHH
Confidence 98887766666777776544442 2344444444446788888888777643321 11222222233345556
Q ss_pred HHHhcCCCHHHHHHHHHHHHH
Q 004992 339 IEMLQSPDVQLREMSAFALGR 359 (720)
Q Consensus 339 ~~ll~~~~~~v~~~a~~~L~~ 359 (720)
.+.|.+-...=-......|..
T Consensus 183 kK~L~DVT~~EF~L~m~lL~~ 203 (507)
T 3u0r_A 183 KKVLEDVTGEEFVLFMKILSG 203 (507)
T ss_dssp HHHTTSCCHHHHHHHHHHHHT
T ss_pred HHHhccccHHHHHHHHHHHHh
Confidence 666655443323333344433
No 156
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.86 E-value=1.2 Score=41.52 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHHhhhhcCcchhhhhh-hcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCC--c-hhHHHhhcccc
Q 004992 346 DVQLREMSAFALGRLAQVITDMHNQAGIA-HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED--N-VADFIRVGGVQ 421 (720)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~~~~l~-~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~-~~~l~~~~~v~ 421 (720)
+...+..++.||..+.. .......+. ..+.+..+...+.++++.++..++..|..+|..++ + ...+.++
T Consensus 67 ~~~~~~~~l~CLkalmn---~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~A---- 139 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMN---NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEA---- 139 (233)
T ss_dssp HHHHHHHHHHHHHHHTS---SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHhC---ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHH----
Confidence 45778889999998887 555444444 45678888889999999999999999998887654 3 3333221
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHH-hcchhHHHHHHHHHHhhcCCcc-------cchhhhccCc
Q 004992 422 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHLCSPDD-------QRTIFIDGGG 493 (720)
Q Consensus 422 ~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~ 493 (720)
+..........-...++..++ ..+.+.+..+...+-.+....+ -+..+...|.
T Consensus 140 -------------------l~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 140 -------------------MTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp -------------------HHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred -------------------HHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 111111122334455666665 3456677666666666655543 3445667777
Q ss_pred HHHHHHhhcCCCchhhhh
Q 004992 494 LELLLGLLGSTNPKQQLD 511 (720)
Q Consensus 494 ~~~L~~ll~~~~~~v~~~ 511 (720)
.+.|..+-...++++...
T Consensus 201 ~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 201 HQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHhccCCHHHHHH
Confidence 777777666666665443
No 157
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.76 E-value=7.8 Score=45.16 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=85.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCCcch
Q 004992 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNI 283 (720)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~-------~~~~v~~~a~~~L~nL~~~~~~~ 283 (720)
.+.+.+...+.+-+..++.+|+|+.. + ..++.|.+++.. ....++..|+++|.+++...+..
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~ 512 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK 512 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH
T ss_pred HHHHHHhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH
Confidence 34445567778888899999999994 2 356777776632 23578889999999997554432
Q ss_pred HHHHHHcCChHHHHHhhc--cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 004992 284 KKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRL 360 (720)
Q Consensus 284 ~~~~~~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l 360 (720)
+-+.++++.. ..++++|..|+.+|.... +.. ..+..+...+.. .+..|.......|.++
T Consensus 513 --------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sl 574 (1056)
T 1lsh_A 513 --------VQEIVLPIFLNVAIKSELRIRSCIVFFESK---PSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSL 574 (1056)
T ss_dssp --------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---CCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHhcCCCCChHHHHHHHHHHHHHC---cCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 2245677774 346889988888886532 222 134566666654 7899999999999999
Q ss_pred hh
Q 004992 361 AQ 362 (720)
Q Consensus 361 ~~ 362 (720)
+.
T Consensus 575 a~ 576 (1056)
T 1lsh_A 575 SR 576 (1056)
T ss_dssp TT
T ss_pred Hh
Confidence 98
No 158
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=90.35 E-value=4.8 Score=38.85 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=93.1
Q ss_pred HHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHh
Q 004992 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (720)
Q Consensus 136 a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (720)
+...|.-|..+.+..+-++..+++..+...+.-++. ++.+..+..|...+....-+. .--...+|.++..
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~--------~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~ 332 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN--------DLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRL 332 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH--------HHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHH
T ss_pred HHHHHHHHhcccccccceeecccceeEEEEeecCCc--------HHHHhhhheeeeecchHHHhh--ccccccchHHHHH
Confidence 444444444667777888899999999999988777 999999999988875222111 1112456777776
Q ss_pred h-cCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC-------CHHHHHHHHHHHHHh
Q 004992 216 L-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-------DSAIHYEAVGVIGNL 276 (720)
Q Consensus 216 l-~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~-------~~~v~~~a~~~L~nL 276 (720)
+ .+++.++.....+.|.|........++..+..|+++.|...+... +..-++.++.+++|-
T Consensus 333 i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 333 IEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred hccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 6 477899999999999999986666677777889999998876431 233455556555554
No 159
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.30 E-value=5.7 Score=36.86 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=98.2
Q ss_pred hhHHHHHHcCChHHHHHHHhccCCCccc---hhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHH
Q 004992 148 EHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQ 224 (720)
Q Consensus 148 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 224 (720)
..-+.+ ..+|+..|+.+|......... ....+....++.||..+..........+...+.+..+...+.++++.++
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r 113 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 113 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence 344444 356778888888654221110 1123777889999999886444444445555678888888989999999
Q ss_pred HHHHHHHHHhccCCh-hc-HHHHH----------hCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcc------hHH
Q 004992 225 RAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------IKK 285 (720)
Q Consensus 225 ~~a~~~L~~L~~~~~-~~-~~~i~----------~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~------~~~ 285 (720)
..++..|..+|.-+. .+ ...+. +..-...++..+++ .+.+.+..++..+-.+....++ .+.
T Consensus 114 ~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ 193 (233)
T 2f31_A 114 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 193 (233)
T ss_dssp HHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999988886332 23 33332 22345567777764 4557777777666666655443 234
Q ss_pred HHHHcCChHHHHHhhccCChHHHHH
Q 004992 286 EVLAAGALQPVIGLLSSCCSESQRE 310 (720)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~ 310 (720)
++...|+.+.+-.+-...++++..+
T Consensus 194 ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 194 ELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHCChHHHHHHHhccCCHHHHHH
Confidence 4445666555554444445554443
No 160
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.96 E-value=1.7 Score=43.89 Aligned_cols=158 Identities=13% Similarity=0.131 Sum_probs=98.5
Q ss_pred hhhHHHhcCChHHHHHHhc-----------CCCHHHHHHHHHHHHHHhhhhcCcchhhhh-hhcCCHHHHHHHhcCCChh
Q 004992 325 CKVHIVQRGAVRPLIEMLQ-----------SPDVQLREMSAFALGRLAQVITDMHNQAGI-AHNGGLVPLLKLLDSKNGS 392 (720)
Q Consensus 325 ~~~~~~~~~~~~~L~~ll~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l-~~~~~i~~l~~ll~~~~~~ 392 (720)
....+. .+++..|+..|. ..+...+..++.||..+.. .......+ .....+..+...+.++++.
T Consensus 102 WV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN---~~~G~~~vl~~~~~i~~l~~~L~s~~~~ 177 (383)
T 3eg5_B 102 WVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN---NKFGIKTMLETEEGILLLVRAMDPAVPN 177 (383)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS---SHHHHHHHHTCSSHHHHHHHTCCTTSHH
T ss_pred HHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc---chhhHHHHHcChHHHHHHHHHhCCCchH
Confidence 334443 445566666653 2345788889999999887 55554444 4456788899999999999
Q ss_pred HHHHHHHHHHhcccCCC--c-hhHHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHh-cchhHH
Q 004992 393 LQHNAAFALYGLADNED--N-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQ 468 (720)
Q Consensus 393 v~~~a~~~L~~l~~~~~--~-~~~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~-~~~~v~ 468 (720)
++..++..|..+|..+. + ...+.+ ++..........-...++..++. .+.+.+
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~-----------------------Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~ 234 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLE-----------------------AMTERAEMDEVERFQPLLDGLKSGTSIALK 234 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHH-----------------------HHHHHHHHHTSCTTHHHHHTTSTTSCHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHH-----------------------HHHHHHHhCCCCcHHHHHHHHHccCcHHHH
Confidence 99999999999987654 2 222222 12222222233445666777765 466777
Q ss_pred HHHHHHHHhhcCCcc-------cchhhhccCcHHHHHHhhcCCCchhh
Q 004992 469 RRVALALAHLCSPDD-------QRTIFIDGGGLELLLGLLGSTNPKQQ 509 (720)
Q Consensus 469 ~~a~~~L~~l~~~~~-------~~~~~~~~~~~~~L~~ll~~~~~~v~ 509 (720)
..+...+-.+....+ -+..+...|..+.+..+-...++++.
T Consensus 235 ~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 235 VGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHH
Confidence 766666666655443 24456677777777765555565544
No 161
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=89.51 E-value=4 Score=39.40 Aligned_cols=136 Identities=16% Similarity=0.192 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCCh
Q 004992 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159 (720)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l 159 (720)
...+...|.-+..++...+-+++.+++..+..++.-++. ++.+...+.|...++.......-. .+.+
T Consensus 260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~------------~l~RaG~KLLLQVSDaksL~~t~L-~e~L 326 (619)
T 3c2g_A 260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN------------DLIRAGCKLLLQVSDAKALAKTPL-ENIL 326 (619)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHHHHHHHHTTCGGGGTSCC-TTHH
T ss_pred HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCc------------HHHHhhhheeeeecchHHHhhccc-cccc
Confidence 334445555556677778889999999999999998888 888899999998885544432211 3568
Q ss_pred HHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcC-------CCHHHHHHHHHHHH
Q 004992 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-------TDTKVQRAAAGALR 232 (720)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~ 232 (720)
|.++..+....++ ++.-...+.|+|...+....++..+..|+++.|-..+.. .+..-+..+|.+++
T Consensus 327 PFi~~~i~~h~eD-------dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~Iic 399 (619)
T 3c2g_A 327 PFLLRLIEIHPDD-------EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIIC 399 (619)
T ss_dssp HHHHHHHHHCCCH-------HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHH
T ss_pred hHHHHHhccCCCc-------ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHH
Confidence 8888888866554 899999999999998788888888888999888776532 23455566666666
Q ss_pred Hhc
Q 004992 233 TLA 235 (720)
Q Consensus 233 ~L~ 235 (720)
|-.
T Consensus 400 N~L 402 (619)
T 3c2g_A 400 NCL 402 (619)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 162
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.31 E-value=12 Score=43.63 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=81.1
Q ss_pred hHHHHHhhcc----CChHHHHHHHHHHHHHhc----cCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhh
Q 004992 293 LQPVIGLLSS----CCSESQREAALLLGQFAA----TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (720)
Q Consensus 293 l~~L~~ll~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (720)
+..+..++.+ .++.++..+..+++.+.. ..+.+...++ ..+...+.+.+...+..-+..++.+|+|+..
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 4455666654 356677777777766652 2222221111 1123344445566778888999999999987
Q ss_pred cCcchhhhhhhcCCHHHHHHHhcC-------CChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhhhhhhhHHHH
Q 004992 365 TDMHNQAGIAHNGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCV 437 (720)
Q Consensus 365 ~~~~~~~~l~~~~~i~~l~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~~~~~~~~~~ 437 (720)
...++.|.+++.. ....++..|+++|.+++...+.
T Consensus 470 -----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~--------------------------- 511 (1056)
T 1lsh_A 470 -----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR--------------------------- 511 (1056)
T ss_dssp -----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH---------------------------
T ss_pred -----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH---------------------------
Confidence 1346666666632 2456888999999999753211
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHH--HhcchhHHHHHHHHHHhhc
Q 004992 438 AKTLKRLEEKIHGRVLNHLLYLM--RVAEKGVQRRVALALAHLC 479 (720)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l~ 479 (720)
.+-+.++++. ...++++|..|+..|..-.
T Consensus 512 -------------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~ 542 (1056)
T 1lsh_A 512 -------------KVQEIVLPIFLNVAIKSELRIRSCIVFFESK 542 (1056)
T ss_dssp -------------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC
T ss_pred -------------HHHHHHHHHhcCCCCChHHHHHHHHHHHHHC
Confidence 1233456666 3457888988888875543
No 163
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.00 E-value=6.1 Score=37.68 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHH
Q 004992 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (720)
Q Consensus 55 ~~~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~ 134 (720)
+......+..++.+.-....+|......|+..|-.++.+-.+-..+.+.. ...|..++..... ++.+++
T Consensus 20 Fs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~----------~~~~rE 88 (315)
T 3qml_C 20 FSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENL----------PLTLRE 88 (315)
T ss_dssp THHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTS----------CHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccC----------ChhHHH
Confidence 44555566666766522233455568999999999999866666666532 4555555533222 227999
Q ss_pred HHHHHHHHhc-cChhhHHHHHHc--CChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHH
Q 004992 135 GSAFALGLLA-VKPEHQQLIVDN--GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (720)
Q Consensus 135 ~a~~~L~~L~-~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (720)
.|+++++... ++|.....+... .++..+..-|......... ....++..-+.+|..|....... ...++..
T Consensus 89 ~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~-~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~ 162 (315)
T 3qml_C 89 LSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHR-SSNILIKRYLSILNELPVTSEDL-----PIYSTVV 162 (315)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHSCCCSTTC-------CCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHhcChHhh-----hhccHHH
Confidence 9999999988 889887777653 4444444444331110000 01167777888888888744322 1346677
Q ss_pred HHHhhcCC--CHHHHHHHHHHHHHhc
Q 004992 212 LVELLEFT--DTKVQRAAAGALRTLA 235 (720)
Q Consensus 212 L~~ll~~~--~~~v~~~a~~~L~~L~ 235 (720)
|.+++... ++.++..++..+..+-
T Consensus 163 L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 163 LQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 77777655 7888888888777655
No 164
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=86.56 E-value=14 Score=43.96 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhh--ccCChHHHHHHHHHHHHHhccC----cchhhHHHhcCCh
Q 004992 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATD----SDCKVHIVQRGAV 335 (720)
Q Consensus 262 ~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~~ 335 (720)
+...|..|-..|.++.... .....+...+ .+.+..+|..|+.+|.+..... +......+...++
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 6678888888888874332 1333333333 3446788999999999876321 1112222233334
Q ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCCchh
Q 004992 336 RPLIEMLQ---SPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 412 (720)
Q Consensus 336 ~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 412 (720)
..+..... +....++...+.++..++... .+ ..| .+.++.+++++.+ ++..+..++.+|..|+..-..
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d-~p---~~W--p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~-- 166 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKRE-WP---QHW--PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT-- 166 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH-ST---TTC--TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHh-Cc---ccc--hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc--
Confidence 44333211 146889999999999999832 12 122 4678888888866 566678888888888642100
Q ss_pred HHHhhcccccccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHH-------------------hcchhHHHHHHH
Q 004992 413 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-------------------VAEKGVQRRVAL 473 (720)
Q Consensus 413 ~l~~~~~v~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-------------------~~~~~v~~~a~~ 473 (720)
.+.... . ........+.... ..++..+..++. .+++.++..++.
T Consensus 167 ----~~~~~~----~-r~~~l~~~l~~~~--------~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~ 229 (1204)
T 3a6p_A 167 ----FQTLPP----Q-RRRDIQQTLTQNM--------ERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALN 229 (1204)
T ss_dssp ----SCCSCH----H-HHHHHHHHHHHTH--------HHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHH
T ss_pred ----ccchHH----H-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHH
Confidence 000000 0 0000011111101 112222222222 234567888888
Q ss_pred HHHhhcCCcccchhhhcc-CcHHHHHHhhcCCCchhhhhHHHHHHHHHhhc
Q 004992 474 ALAHLCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLANKA 523 (720)
Q Consensus 474 ~L~~l~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~aL~~L~~~~ 523 (720)
++.++....+...++... ..++.+..++. +++++..|..+|..+....
T Consensus 230 ~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 230 TLAGYIDWVSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHTTTTTSCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 988887765533332221 25677776655 5789999999999999743
No 165
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=86.52 E-value=29 Score=34.89 Aligned_cols=144 Identities=14% Similarity=0.229 Sum_probs=93.1
Q ss_pred cCCcHHHHHhhc-----------CCCHHHHHHHHHHHHHhccCChhcHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHH
Q 004992 206 EGGIPPLVELLE-----------FTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVI 273 (720)
Q Consensus 206 ~~~i~~L~~ll~-----------~~~~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~l~~L~~ll~~~~~~v~~~a~~~L 273 (720)
.+|+..|+.+|. ..+......++.||..+.. +..+...+. ....+..+...+.+.++.++..++..|
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 456777777663 2245778889999999985 555655555 466899999999999999999999999
Q ss_pred HHhhcCCc-ch-HHHHH----------HcCChHHHHHhhcc-CChHHHHHHHHHHHHHhccCcch--h----hHHHhcCC
Q 004992 274 GNLVHSSP-NI-KKEVL----------AAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDC--K----VHIVQRGA 334 (720)
Q Consensus 274 ~nL~~~~~-~~-~~~~~----------~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~--~----~~~~~~~~ 334 (720)
.-+|.... .. ...++ +..-+..++..+.+ .+.+.+..+...+-.+....++. + ..+...|+
T Consensus 187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 266 (383)
T 3eg5_B 187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 266 (383)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCh
Confidence 99886653 22 22222 23456777888876 46677776666666666544332 2 22334555
Q ss_pred hHHHHHHhcC-CCHHHHH
Q 004992 335 VRPLIEMLQS-PDVQLRE 351 (720)
Q Consensus 335 ~~~L~~ll~~-~~~~v~~ 351 (720)
.+.+ .-++. .++.+..
T Consensus 267 ~~il-~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 267 HQVL-QELREIENEDMKV 283 (383)
T ss_dssp HHHH-HHHTTSCCHHHHH
T ss_pred HHHH-HHHhcCCChhHHH
Confidence 5544 44655 4554443
No 166
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=85.99 E-value=12 Score=37.66 Aligned_cols=155 Identities=20% Similarity=0.254 Sum_probs=95.0
Q ss_pred cCChHHHHHHHhccCCCccc---hhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 004992 156 NGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (720)
Q Consensus 156 ~~~l~~L~~lL~~~~~~~~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (720)
.+|+..|+.+|......... .........++.||..+..........+...+++..+...+.++++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 45677777777543211100 112377788999999988644444445555677888999999899999999999888
Q ss_pred HhccCCh-hc-HHHHH----------hCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcc------hHHHHHHcCCh
Q 004992 233 TLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------IKKEVLAAGAL 293 (720)
Q Consensus 233 ~L~~~~~-~~-~~~i~----------~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~~~~~~------~~~~~~~~~~l 293 (720)
.+|..+. .+ ...+. +..-+..++..+.+ .+.+.+..++..+..+....++ .+..+...|+.
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8886332 23 33322 22345567777763 4567777777777666655443 33455556666
Q ss_pred HHHHHhhccCChHHHHH
Q 004992 294 QPVIGLLSSCCSESQRE 310 (720)
Q Consensus 294 ~~L~~ll~~~~~~~~~~ 310 (720)
+.+-.+-...++.+..+
T Consensus 206 ~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 206 QVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHTTCCCHHHHHH
T ss_pred HHHHHHhccCChhHHHH
Confidence 65554444445555444
No 167
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=85.31 E-value=5.6 Score=40.17 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHHhhhhcCcchhhh-hhhcCCHHHHHHHhcCCChhHHHHHHHHHHhcccCCC--c-hhHHHhhcccc
Q 004992 346 DVQLREMSAFALGRLAQVITDMHNQAG-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED--N-VADFIRVGGVQ 421 (720)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~~~~-l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~-~~~l~~~~~v~ 421 (720)
+......++.||..+.. ....... +....++..+...+.++++.++..++..|..+|..+. + ...+.+
T Consensus 71 d~~~~~~~l~CLkalmN---~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~----- 142 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMN---NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLE----- 142 (386)
T ss_dssp HHHHHHHHHHHHHHHTS---SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHhC---CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHH-----
Confidence 45778889999999887 5444444 4445678889999999999999999999988887654 2 222222
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHH-hcchhHHHHHHHHHHhhcCCcc-------cchhhhccCc
Q 004992 422 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHLCSPDD-------QRTIFIDGGG 493 (720)
Q Consensus 422 ~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~ 493 (720)
++..........-+..++..+. +.+.+++..+...+-.+....+ -+..+...|.
T Consensus 143 ------------------Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL 204 (386)
T 2bnx_A 143 ------------------AMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 204 (386)
T ss_dssp ------------------HHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred ------------------HHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 1111111122334455666665 3456677666666666655543 3456777777
Q ss_pred HHHHHHhhcCCCchhhhh
Q 004992 494 LELLLGLLGSTNPKQQLD 511 (720)
Q Consensus 494 ~~~L~~ll~~~~~~v~~~ 511 (720)
.+.|..+-...++++...
T Consensus 205 ~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 205 HQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHhccCChhHHHH
Confidence 777776666677665443
No 168
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=79.50 E-value=31 Score=32.94 Aligned_cols=135 Identities=12% Similarity=0.087 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhc--CC
Q 004992 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GG 208 (720)
Q Consensus 131 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~ 208 (720)
+-...|+..|..++.+.+..-.++... ...|-+++.....+. .+++.+..++......+|..-..+... .+
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~------~~rE~aarII~ssLRNNP~Al~~V~~~~p~f 115 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPL------TLRELSTRVITSCLRNNPPVVEFINESFPNF 115 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCH------HHHHHHHHHHHHHHTTCHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCCh------hHHHHHHHHHHHHHccCHHHHHHHHHhChhH
Confidence 457789999999998888888877643 455555553322221 789999999999999888876655543 33
Q ss_pred cHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 004992 209 IPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLV 277 (720)
Q Consensus 209 i~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~~--~~~v~~~a~~~L~nL~ 277 (720)
+..++.-|.. ....+...-+.+|-.|...+... . ...+..|..++.-. ++.++..++..+..+-
T Consensus 116 v~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F----~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 116 KSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL----P-IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh----h-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 3333333322 34577788889999999743222 1 34677777777666 8889988888887775
No 169
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.69 E-value=2.4 Score=33.66 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=32.2
Q ss_pred CcccChhhHHHHHHHHhhhChHHHHHHHHHHHHhcC
Q 004992 615 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 650 (720)
Q Consensus 615 ~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i 650 (720)
.-.++++|...++.+|+.|++++|.+.|..|+..+.
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF 40 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHL 40 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345889999999999999999999999999988764
No 170
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=78.35 E-value=2.6 Score=33.53 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=30.2
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 681 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 681 (720)
++.+|+.+++..|..|+.+.|.+.|.+|+.++
T Consensus 77 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 77 LEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999876
No 171
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=70.40 E-value=90 Score=31.11 Aligned_cols=126 Identities=12% Similarity=0.135 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhhc-CchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhc
Q 004992 181 VIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (720)
Q Consensus 181 v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~ 259 (720)
.+...+.-+..+... ++. .-..+++.++.+-.+.+.++|..++..|...+....+. + ..+++.|..++.
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el---~--~~~l~~L~~LL~ 110 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL---L--LKLIANLNMLLR 110 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG---H--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHc
Confidence 344455555555432 232 22467899999999999999999999999888533332 2 225788888999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCC---------------hHHHHHhhccCChHHHHHHHHHHHHHh
Q 004992 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA---------------LQPVIGLLSSCCSESQREAALLLGQFA 319 (720)
Q Consensus 260 ~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~---------------l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (720)
++++.|.+.++.+..++- +..-+.+...+. -..++.+..+.+..++..++..+..+.
T Consensus 111 d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp CSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 999999998888887774 222222222222 123444455556666666666555543
No 172
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=67.48 E-value=70 Score=31.92 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhhc-CCcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHh
Q 004992 264 AIHYEAVGVIGNLVH-SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (720)
Q Consensus 264 ~v~~~a~~~L~nL~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 342 (720)
+.+...+.-+..|.. .++. .-.++++.++++-.+.+.++|+.++..|...+....+.. ..+++.|..++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 345555666666543 2232 235688999999999999999999999998876333332 23578888889
Q ss_pred cCCCHHHHHHHHHHHHHHhhhh-----cCcch----hhhhhhc-CCHHHHHHHhcCCChhHHHHHHHHHHhc
Q 004992 343 QSPDVQLREMSAFALGRLAQVI-----TDMHN----QAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGL 404 (720)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~-----~~~~~----~~~l~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l 404 (720)
.+.++.+.+.++.+.+++-... ..+.. ...|..- .+-..++.++.+.+..++..+.+.+..+
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 9889999888887776655200 01111 1222222 2234577777888999999999888776
No 173
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=65.71 E-value=12 Score=39.52 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=61.3
Q ss_pred cceEEEEECCeEEehhHHHHhhcchhHh-hcccC-CcCCCCCCceecCCCCHHHHHHHHHHHhc-CCcccChh-hHHHHH
Q 004992 552 LSDVTFLVEGRRFYAHRICLLASSDAFR-AMFDG-GYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQDLL 627 (720)
Q Consensus 552 ~~Dv~~~~~~~~~~~h~~iL~~~s~~f~-~~~~~-~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~~~~-~~~~ll 627 (720)
..-|.+.++|..|...+..|....+-+- .++.. .+.....+++-+ |=++..|+.+|.|+.+ |++..+.+ ....+.
T Consensus 51 ~~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~ 129 (514)
T 2r9r_B 51 SERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFS 129 (514)
T ss_dssp CCEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHH
T ss_pred CCEEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHH
Confidence 3457889999999999999975433221 11211 111233456666 6699999999999999 99987654 356788
Q ss_pred HHHhhhChHHHH
Q 004992 628 RAADQYLLEGLK 639 (720)
Q Consensus 628 ~~A~~~~~~~l~ 639 (720)
.=|++|+++++.
T Consensus 130 ~E~~f~~i~~~~ 141 (514)
T 2r9r_B 130 EEIRFYELGEEA 141 (514)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHhcCCCHHH
Confidence 899999998754
No 174
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=64.77 E-value=6.4 Score=32.78 Aligned_cols=37 Identities=5% Similarity=0.024 Sum_probs=28.8
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhh
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLS 686 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~v~ 686 (720)
++.+|+.+++..|..|+...|.+.|.+|+.+++..-.
T Consensus 87 i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~ 123 (135)
T 2yy9_A 87 LTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQA 123 (135)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCCC-------
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCC
Confidence 6789999999999999999999999999998876543
No 175
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=64.03 E-value=12 Score=30.52 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=29.4
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 681 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 681 (720)
++.+++.+++..|..|+...|.+.|.+|+.++
T Consensus 95 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999754
No 176
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=59.85 E-value=25 Score=28.28 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=29.3
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 681 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 681 (720)
++.+|+.+++..|..|+.+.|.+.|.+|+.+.
T Consensus 89 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 89 AKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999753
No 177
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=58.58 E-value=12 Score=30.08 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=27.6
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 681 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 681 (720)
++.+|+.+++..|..|+.+.|.+.|.+|+.++
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 67889999999999999999999999998765
No 178
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=57.90 E-value=23 Score=28.20 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=28.0
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIM 679 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~ 679 (720)
++.+|+.+++..|..|+.+.|.+.|.+|+.
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 578899999999999999999999999984
No 179
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=57.86 E-value=11 Score=30.51 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=28.0
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIM 679 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~ 679 (720)
++.+|+.+++..|..|+.+.|.+.|.+|+.
T Consensus 88 i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 678899999999999999999999999974
No 180
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=56.56 E-value=1.3e+02 Score=28.08 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHccC--hhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHH
Q 004992 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (720)
Q Consensus 57 ~~i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~ 134 (720)
..-.++++.|.+.-... + +.+...+.-...++-+ +..-.. .++.++.+..+.+. ++|.
T Consensus 12 ~~~~~v~~lln~A~~~~--~-~~kl~~L~qa~el~~~~dp~ll~~-----~l~~il~~~~~~~~------------~vrk 71 (257)
T 3gs3_A 12 TARAKVVDWCNELVIAS--P-STKCELLAKVQETVLGSCAELAEE-----FLESVLSLAHDSNM------------EVRK 71 (257)
T ss_dssp HHHHHHHHHHHHHTTCC--H-HHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHGGGGCSCH------------HHHH
T ss_pred cHHHHHHHHHHHhhhcC--c-HHHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHhccCChH------------HHHH
Confidence 33444555555553322 2 2577788888876553 443222 45667776655444 8999
Q ss_pred HHHHHHHHhc-cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhh-------cCchh-----hH
Q 004992 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-------ENSSI-----KT 201 (720)
Q Consensus 135 ~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~-------~~~~~-----~~ 201 (720)
..+..+...+ ..++.... .++.|..++++.+. .+.+.++.+..++.. .++.. ..
T Consensus 72 ~~~~Fi~e~~~~k~~l~~~-----~l~~L~~Ll~d~d~--------~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~ 138 (257)
T 3gs3_A 72 QVVAFVEQVCKVKVELLPH-----VINVVSMLLRDNSA--------QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQA 138 (257)
T ss_dssp HHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 9999999999 66655433 46788888875433 777777776666542 11110 11
Q ss_pred HHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004992 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (720)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (720)
.-.-..+-..++.++.+.+..++..+...+-.+.
T Consensus 139 W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 139 WNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 1111123345667778889999999888777654
No 181
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=55.83 E-value=1.3e+02 Score=27.99 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhhcC-CcchHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHh
Q 004992 264 AIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (720)
Q Consensus 264 ~v~~~a~~~L~nL~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 342 (720)
+.+...+.-+..+... ++.. -..+++.++.+..+.+.++|+..+..+...+...++.. ..+++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~l-----l~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAEL-----AEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGG-----HHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhH-----HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 5666666666776543 3332 23467888888778889999999999998885433322 23578888889
Q ss_pred cCCCHHHHHHHHHHHHHHhhhh-----cCcc----hhhhhhhc-CCHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 004992 343 QSPDVQLREMSAFALGRLAQVI-----TDMH----NQAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLA 405 (720)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~-----~~~~----~~~~l~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (720)
.+.++.+.+.++.+..++-... ..+. ....|..- ..-..+++++.+.+..++..+.+.+..+.
T Consensus 100 ~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 9999999998888776655300 0111 11222222 22345777778889999999998888763
No 182
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=53.49 E-value=11 Score=32.70 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=30.5
Q ss_pred cChhhHHHHHHHHhhhChHHHHHHHHHHHHhcC
Q 004992 618 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 650 (720)
Q Consensus 618 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i 650 (720)
++.+++..++..|+.|+.+.|++.|.+++.+++
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~ 164 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHA 164 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999998865
No 183
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=52.47 E-value=16 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=27.2
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYI 678 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i 678 (720)
++.+++.+++..|..|+.+.|.+.|.+|+
T Consensus 91 ~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 57889999999999999999999999986
No 184
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=52.08 E-value=23 Score=29.57 Aligned_cols=70 Identities=7% Similarity=0.039 Sum_probs=53.7
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhcHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~v~~~a~~~L~nL~ 277 (720)
++..|.+-+.+.++.++..|+..|-.+..+ .......+....++..+.+++...++.|+..++..+...+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 456777778888999999999888888763 2344556666667778888887778899999998888776
No 185
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=50.76 E-value=2.9 Score=35.08 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=30.3
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEHF 682 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 682 (720)
++.+|+.+++..|..|+...|.+.|.+|+..++
T Consensus 101 i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l 133 (138)
T 2z8h_A 101 LSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133 (138)
T ss_dssp CCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999997654
No 186
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=50.41 E-value=37 Score=28.60 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=57.3
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhcHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~nL~~ 278 (720)
++..|..-+++.++.++..|+..|-.+..+ .+.....+....++..|++++.. .+..|+..++..+...+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456777778899999999999999988863 34566777777789999999874 367999999999888864
No 187
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=49.82 E-value=1.1e+02 Score=35.04 Aligned_cols=217 Identities=12% Similarity=0.023 Sum_probs=114.5
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhc----CCCHHHHHHHHHHHH--HHhhhhc
Q 004992 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----SPDVQLREMSAFALG--RLAQVIT 365 (720)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~L~--~l~~~~~ 365 (720)
++.-|+.+..+...++|..|-.+|......-+..... ++|.+++.|+ +.+.+-.+-|+.+|. .+..
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~--- 205 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHR--- 205 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHH---
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhh---
Confidence 4566777777788999999999999887543333332 3566777663 445555666666554 1211
Q ss_pred Ccchhhhhh-hcCCHHHHHHHhcCCChhHHHHHHHHHHhccc---CCCchhHHHhhcccccccchh-hhhhhhHHHHHHH
Q 004992 366 DMHNQAGIA-HNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD---NEDNVADFIRVGGVQKLQDGE-FIVQATKDCVAKT 440 (720)
Q Consensus 366 ~~~~~~~l~-~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~l~~~~~v~~L~~~~-~~~~~~~~~~~~~ 440 (720)
.....+. -...++.+++..+...+.++..+-.+...+.. .+... ...+...+..+.... ........--...
T Consensus 206 --~~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~-~~~~~~~~~~i~~~d~~i~~~~~~~~~~~ 282 (997)
T 1vsy_5 206 --KLMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSV-CVISDQAFLPLAPPDGTINLQVEAVKLAK 282 (997)
T ss_dssp --HGGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSC-CCCCGGGTGGGCCSCSSTTSHHHHHHHHT
T ss_pred --HHhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHH-HHHHHHHHhccCCCcHHHHHHHHHHHHHH
Confidence 0011111 11245566666666777777766655444432 12211 111111111111000 0000000000000
Q ss_pred HHHHH--HhhhhhhHHHHHHHHHh-cc--hhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcCCCchhhhhHHHH
Q 004992 441 LKRLE--EKIHGRVLNHLLYLMRV-AE--KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVA 515 (720)
Q Consensus 441 ~~~l~--~~~~~~~~~~L~~ll~~-~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~a 515 (720)
.++.. .....++...|+.+.++ .+ ......++..|.++....+. .....++..+++.+.+++|.+|..|..+
T Consensus 283 ~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~~~~~~l~~dhp~~R~~a~~~ 359 (997)
T 1vsy_5 283 KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVFSIISQISTKHPEIIHLVVKS 359 (997)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHHHHHGGGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 01110 11122445555666533 35 66777878887777654431 1233457788889999999999999999
Q ss_pred HHHHHhh
Q 004992 516 LFKLANK 522 (720)
Q Consensus 516 L~~L~~~ 522 (720)
+..+...
T Consensus 360 l~~il~~ 366 (997)
T 1vsy_5 360 LLSTCNK 366 (997)
T ss_dssp HTHHHHH
T ss_pred HHHHHHH
Confidence 9887765
No 188
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=49.41 E-value=3.9e+02 Score=31.54 Aligned_cols=131 Identities=14% Similarity=0.117 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhh-ccCChHHHHHHHHHHHHHhccCcchh---hH------HHh
Q 004992 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCK---VH------IVQ 331 (720)
Q Consensus 262 ~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~---~~------~~~ 331 (720)
++.+...-++.+.++....+ ...++.++-++ .+.+...++.+-.++.+.....--.. .. .+-
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 56666777777777753322 23455444433 23334566677777776654221110 00 111
Q ss_pred cCChHHHHH----HhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 332 RGAVRPLIE----MLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 332 ~~~~~~L~~----ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
....+.++. ++++.++.++..+......+=... +. .....++..|+..+-+++..-...|+.+|..|+.
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f-d~-----~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-DT-----YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-CH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-cc-----hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh
Confidence 234455554 357788888888887777666521 11 2223345666666655666556668888888875
No 189
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.21 E-value=36 Score=29.29 Aligned_cols=70 Identities=4% Similarity=0.020 Sum_probs=54.6
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhcHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~L~~ll~~-~~~~v~~~a~~~L~nL~ 277 (720)
++..|.+-+.+.++.++..|+..|-.+..+ .......+....++..|++++.. .++.|+..++..+...+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 446777778889999999999999888863 34556666666788888888875 57799999998887776
No 190
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=48.87 E-value=22 Score=29.69 Aligned_cols=72 Identities=8% Similarity=0.068 Sum_probs=56.0
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHhccc
Q 004992 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 334 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (720)
++..|.+-|.+.++.++..|+..|-.+.... +......+....++..+.+++...++.|+..++..+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc-G~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNC-GKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhc-CHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4677778888899999999999888888732 23344556666778888888877889999999999887754
No 191
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=47.68 E-value=45 Score=28.14 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=56.0
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhcHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH 278 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~nL~~ 278 (720)
++..|..-+.+.++.++..|+..|-.+..+ .......+....++..|++++.. .+..|+..++..+...+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 456777778889999999999999888862 34456667777788899999864 467899999999988864
No 192
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=44.88 E-value=39 Score=29.02 Aligned_cols=95 Identities=3% Similarity=-0.024 Sum_probs=65.8
Q ss_pred cCChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHH
Q 004992 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVP 381 (720)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~ 381 (720)
+.+|......|-.+..- +... ..++..|.+-|.+.++.++..|+..|-.+.... +......+....++..
T Consensus 30 ~~Dw~~~leicD~I~~~----~~~~-----keA~ral~krl~~~n~~vql~AL~LLd~~vkNc-G~~Fh~evas~~Fl~e 99 (163)
T 1x5b_A 30 TEDWSLIMDICDKVGST----PNGA-----KDCLKAIMKRVNHKVPHVALQALTLLGACVANC-GKIFHLEVCSRDFATE 99 (163)
T ss_dssp SCCHHHHHHHHHHHHHS----SSHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT-CHHHHHHHTSHHHHHH
T ss_pred CcCHHHHHHHHHHHhCC----CccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-hHHHHHHHhhHHHHHH
Confidence 34666655555544431 1111 124567778888899999999999999888832 2344556667778888
Q ss_pred HHHHhcC-CChhHHHHHHHHHHhccc
Q 004992 382 LLKLLDS-KNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 382 l~~ll~~-~~~~v~~~a~~~L~~l~~ 406 (720)
+++++.. .++.|+..++..|...+.
T Consensus 100 l~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 100 VRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 8888864 578999999988887754
No 193
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=43.81 E-value=41 Score=31.44 Aligned_cols=101 Identities=10% Similarity=0.059 Sum_probs=60.3
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhh----cc----CChHHHHHHHHHHHHHhccCcchhhHHH
Q 004992 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL----SS----CCSESQREAALLLGQFAATDSDCKVHIV 330 (720)
Q Consensus 259 ~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll----~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 330 (720)
.+..+..+..++++++|+..+....++.+........++..+ .+ .+..++..++..+.|++......+.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 345678899999999999766442333333221223333332 21 2456788888999999853111110
Q ss_pred hcCChHHHHHHhcC---------CCHHHHHHHHHHHHHHhh
Q 004992 331 QRGAVRPLIEMLQS---------PDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 331 ~~~~~~~L~~ll~~---------~~~~v~~~a~~~L~~l~~ 362 (720)
+......+++.+.. .+++....++-+|+++..
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 12233445555542 377888999999999997
No 194
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=43.26 E-value=64 Score=30.05 Aligned_cols=32 Identities=6% Similarity=0.281 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 681 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 681 (720)
++.+|+.+++..|..|+.+.|.+.|.+|+.++
T Consensus 99 i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~ 130 (256)
T 3hve_A 99 LNEDTIQDVVQAADLLLLTDLKTLCCEFLEGC 130 (256)
T ss_dssp CC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999864
No 195
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=42.71 E-value=43 Score=28.20 Aligned_cols=72 Identities=18% Similarity=0.118 Sum_probs=57.3
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcC------CChhHHHHHHHHHHhccc
Q 004992 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 334 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~------~~~~v~~~a~~~L~~l~~ 406 (720)
++..|.+-+++.++.++..|+..|-.+.... +......+....++..|++++.. .+..|+..++..|...+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNC-G~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHC-GEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc-CHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677778888999999999999999999832 34455677777889999998863 377899999998888764
No 196
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.95 E-value=43 Score=28.23 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=57.2
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhcC------CChhHHHHHHHHHHhccc
Q 004992 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 334 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~~------~~~~v~~~a~~~L~~l~~ 406 (720)
++..|.+-+.+.++.++..|+..|-.+.... +......+....++..|++++.. .++.|+..++..|...+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNC-G~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSC-GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC-CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-CHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4677788888999999999999999988832 33445667777888899999853 578899999999988864
No 197
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=40.69 E-value=21 Score=33.37 Aligned_cols=107 Identities=8% Similarity=0.000 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhccChh-hHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 004992 130 HEVEKGSAFALGLLAVKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (720)
Q Consensus 130 ~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (720)
+..+..+++++.|+..++. .+..+........++..+...-.+........++..++..+.|++......+. +...
T Consensus 104 ~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~ 180 (253)
T 3gae_A 104 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 180 (253)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTH
T ss_pred hhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHH
Confidence 3789999999999997777 45544433233444444433221111112237888889999999852111110 1122
Q ss_pred cHHHHHhhcC---------CCHHHHHHHHHHHHHhccCCh
Q 004992 209 IPPLVELLEF---------TDTKVQRAAAGALRTLAFKND 239 (720)
Q Consensus 209 i~~L~~ll~~---------~~~~v~~~a~~~L~~L~~~~~ 239 (720)
...+...+.. .+++....++-+++++...++
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 3344444431 377888999999999996433
No 198
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=40.53 E-value=15 Score=30.97 Aligned_cols=29 Identities=7% Similarity=0.356 Sum_probs=27.1
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYI 678 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i 678 (720)
++.+|+.+++..|..|+...|.+.|.+|+
T Consensus 115 i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 115 LNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 57889999999999999999999999886
No 199
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=40.46 E-value=39 Score=29.30 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=57.0
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhccCC-hhcHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhcC
Q 004992 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHS 279 (720)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~nL~~~ 279 (720)
++..|.+-+.+.++.++..|+.+|-.+..+. ......+....++..|++++.. .+..|+..++..+...+..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3567778888999999999999999888743 4556677777789999999863 3679999999999888643
No 200
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=38.98 E-value=1.1e+02 Score=35.18 Aligned_cols=106 Identities=12% Similarity=-0.021 Sum_probs=63.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhcc----CChHHHHHHHHHHH--HHhccCc
Q 004992 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLG--QFAATDS 323 (720)
Q Consensus 250 ~l~~L~~ll~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~~~~~a~~~L~--~l~~~~~ 323 (720)
++.-|+.+..+..++||..|-.+|......-+..... ++|.+++.|+. .+.+-.+-|+.+|. .+.. .
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~--~ 206 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHR--K 206 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHH--H
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhh--H
Confidence 4667788888889999999999999987655544433 35666666643 34555555555544 1110 0
Q ss_pred chhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 004992 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (720)
Q Consensus 324 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (720)
-....-.-..+++.|+.....+.+.++..+-.+...+..
T Consensus 207 ~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~ 245 (997)
T 1vsy_5 207 LMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVI 245 (997)
T ss_dssp GGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHT
T ss_pred HhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHh
Confidence 000111112345666666666677777766666555555
No 201
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=38.66 E-value=15 Score=30.64 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=26.3
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEHF 682 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 682 (720)
++.+++.+++..|..|+.+.|.+.|.+|+.+++
T Consensus 91 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 123 (145)
T 4eoz_A 91 NLDKMADDLLAAADKYALERLKVMCEDALCSNL 123 (145)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHCC-----
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999998754
No 202
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=37.59 E-value=1.5e+02 Score=29.85 Aligned_cols=129 Identities=12% Similarity=0.055 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHH-HHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhh
Q 004992 350 REMSAFALGRLAQVITDMHNQAGIAHNGGLVPLL-KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF 428 (720)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~ 428 (720)
+-.++..|+.++. .+.... .+..++ ..+.+.++..+..++.+++|+..++.....++....
T Consensus 243 ~FPaLDLLRl~v~---~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~--------- 304 (425)
T 3pst_A 243 KTPAYDIVRLIVK---KLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQ--------- 304 (425)
T ss_dssp CHHHHHHHHHHGG---GCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHH---------
T ss_pred ccHHHHHHHHHHc---CCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCch---------
Confidence 5557777777776 332221 122232 233456788999999999999988775444443210
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhHHHHHHH--------HHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHh
Q 004992 429 IVQATKDCVAKTLKRLEEKIHGRVLNHLLYL--------MRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 500 (720)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~l--------l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l 500 (720)
....++.. +...+.+++.+++..+.|++........ +...+..+.++
T Consensus 305 -----------------------~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~--~~el~~~l~e~ 359 (425)
T 3pst_A 305 -----------------------VYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--DLELLPIVADA 359 (425)
T ss_dssp -----------------------HHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS--CTTHHHHHHHH
T ss_pred -----------------------hHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Confidence 11112221 2234678899999999999653221000 12334556665
Q ss_pred hc---------CCCchhhhhHHHHHHHHHh
Q 004992 501 LG---------STNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 501 l~---------~~~~~v~~~a~~aL~~L~~ 521 (720)
+. ..+++..+++..||.+|..
T Consensus 360 l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 360 INTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp HHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 55 2588899999999999995
No 203
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=35.80 E-value=27 Score=33.82 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=30.3
Q ss_pred cChhhHHHHHHHHhhhChHHHHHHHHHHHHhcC
Q 004992 618 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 650 (720)
Q Consensus 618 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i 650 (720)
++.+++..++.+|+.|+++.|++.|.+++..++
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 304 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHA 304 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999998865
No 204
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=35.15 E-value=27 Score=28.06 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.4
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIME 680 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~ 680 (720)
++.+|+.+++..|..|....|.+.|.+++..
T Consensus 87 i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 87 LQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp ECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 6789999999999999999999999998754
No 205
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.60 E-value=1.2e+02 Score=27.64 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=53.6
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc--cChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
++..|..-|.+.+. .++..|+.+|-.+. .++.++..+....++..|..+++...+. +|+
T Consensus 46 a~ral~krl~~~n~------------~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~-------~Vk 106 (226)
T 3zyq_A 46 AVNSIKKKVNDKNP------------HVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEV-------NVR 106 (226)
T ss_dssp HHHHHHHHHTCSSH------------HHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCH-------HHH
T ss_pred HHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCH-------HHH
Confidence 34556677776655 88999999988888 4566788888888888888888653332 888
Q ss_pred HHHHHHHHHhhh
Q 004992 183 RRAADAITNLAH 194 (720)
Q Consensus 183 ~~a~~~L~~l~~ 194 (720)
..++..+...+.
T Consensus 107 ~kil~li~~W~~ 118 (226)
T 3zyq_A 107 NKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 206
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=34.09 E-value=56 Score=28.29 Aligned_cols=94 Identities=15% Similarity=-0.001 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHH
Q 004992 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPL 382 (720)
Q Consensus 303 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l 382 (720)
.+|......|-.+..- +... ..++..|.+-+.+.++.++..|+..|-.+.... +......+....++..|
T Consensus 29 ~Dw~~ileicD~I~~~----~~~~-----k~A~ral~krl~~~n~~vql~AL~LLd~~vkNC-G~~Fh~evas~~Fl~eL 98 (171)
T 1juq_A 29 EDWEYIIGFCDQINKE----LEGP-----QIAVRLLAHKIQSPQEWEALQALTVLEACMKNC-GRRFHNEVGKFRFLNEL 98 (171)
T ss_dssp CCHHHHHHHHHHHHHS----TTHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-HHHHHHHHTSHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC----CccH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc-CHHHHHHHhhHHHHHHH
Confidence 4566655555544432 1111 124577888888999999999999999999822 23445567777889999
Q ss_pred HHHhcC------CChhHHHHHHHHHHhccc
Q 004992 383 LKLLDS------KNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 383 ~~ll~~------~~~~v~~~a~~~L~~l~~ 406 (720)
++++.. .+..|+..++..|...+.
T Consensus 99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 99 IKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 998853 367899999999888764
No 207
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=33.48 E-value=1.4e+02 Score=29.35 Aligned_cols=133 Identities=11% Similarity=0.045 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHH-HHhcCCChhHHHHHHHHHHhcccCCCchhHHHhhcccccccchhh
Q 004992 350 REMSAFALGRLAQVITDMHNQAGIAHNGGLVPLL-KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF 428 (720)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~v~~L~~~~~ 428 (720)
+-.++..|+.++. ++.... .+..++ ..+.+..+..++.++++++|+..++.....++....+
T Consensus 180 ~FP~LDLLRl~v~---~~~~~~------~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~-------- 242 (362)
T 3l3f_X 180 KTPAYDIVRLIVK---KLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQV-------- 242 (362)
T ss_dssp CHHHHHHHHHHGG---GCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHH--------
T ss_pred cchHHHHHHHHhc---CCChHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchh--------
Confidence 5557777777776 332221 222233 2334567889999999999999888754444432110
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhHHHHH----HHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhc--
Q 004992 429 IVQATKDCVAKTLKRLEEKIHGRVLNHLL----YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-- 502 (720)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~~~~~~~~~L~----~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-- 502 (720)
...++..+. ..+...+.+++.+++..+.|++........ +......+.+++.
T Consensus 243 --------------------~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~--~~el~~~l~~~l~~~ 300 (362)
T 3l3f_X 243 --------------------YKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--DLELLPIVADAINTK 300 (362)
T ss_dssp --------------------HTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS--CTTHHHHHHHHHHHT
T ss_pred --------------------HHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHhh
Confidence 000111110 112234678899999999998653211000 1233455666655
Q ss_pred -------CCCchhhhhHHHHHHHHHh
Q 004992 503 -------STNPKQQLDGAVALFKLAN 521 (720)
Q Consensus 503 -------~~~~~v~~~a~~aL~~L~~ 521 (720)
..+++..+++..||.+|..
T Consensus 301 ~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 301 YGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp TTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHHh
Confidence 3588899999999999995
No 208
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=32.54 E-value=52 Score=33.20 Aligned_cols=107 Identities=7% Similarity=-0.012 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHHcC-ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 004992 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (720)
Q Consensus 130 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (720)
+..+..+++++.|+..++.....+.... ....+++.+...-..........++..++..+.|++......+. +...
T Consensus 276 ~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el 352 (425)
T 3pst_A 276 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 352 (425)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTH
T ss_pred hhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 3788999999999997777555555332 24555655543221111111237888888999999852111110 0123
Q ss_pred cHHHHHhhc---------CCCHHHHHHHHHHHHHhccCCh
Q 004992 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAFKND 239 (720)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~~~ 239 (720)
...+...+. ..+++....++-+|++|....+
T Consensus 353 ~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 353 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 345555554 2478899999999999996333
No 209
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.89 E-value=62 Score=29.55 Aligned_cols=72 Identities=10% Similarity=0.134 Sum_probs=55.8
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc-CCChhHHHHHHHHHHhccc
Q 004992 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 334 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~ 406 (720)
++..|.+-|.+.++.++..|+..|-.+.... +......+....+++.|.+++. ..++.|+..++..|...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNc-G~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNC-GQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-CHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-chHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4677888888999999999999999998843 3334556666777788888874 3578899999998888764
No 210
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=31.76 E-value=88 Score=26.58 Aligned_cols=63 Identities=5% Similarity=0.006 Sum_probs=44.6
Q ss_pred cChhhHHHHHHHHhhhCh---------------HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 004992 618 VTLDIAQDLLRAADQYLL---------------EGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHF 682 (720)
Q Consensus 618 ~~~~~~~~ll~~A~~~~~---------------~~l~~~c~~~l~~~i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 682 (720)
++...+..++..+.+..- ..+..-..+|+ .++.+++++++..|...+...|.+.|.+|+...+
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i 126 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 126 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHT--CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHH--cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455566667666665441 11222223344 4899999999999999999999999999998654
No 211
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=31.54 E-value=2.3e+02 Score=23.64 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=56.8
Q ss_pred ChhcHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC--ChHHHH
Q 004992 238 NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQR 309 (720)
Q Consensus 238 ~~~~~~~i~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~ 309 (720)
....+..+++.|++..+-..|.. ++..+|...+.+|.++ +-....+.++|+-..++.+-.+. .++.++
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 45567888899999999998864 4678999999999998 34456677777766666665554 466777
Q ss_pred HHHHHHHHHh
Q 004992 310 EAALLLGQFA 319 (720)
Q Consensus 310 ~a~~~L~~l~ 319 (720)
.|-..+..-+
T Consensus 126 la~~Li~~Ws 135 (145)
T 2xpp_A 126 SAKALVQKWT 135 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666554
No 212
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=31.13 E-value=18 Score=29.60 Aligned_cols=32 Identities=0% Similarity=0.055 Sum_probs=23.1
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 681 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 681 (720)
++.+|+.+++..|..|+...|.+.|.+|+.+.
T Consensus 96 i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 96 MNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp CCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999764
No 213
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=31.13 E-value=1.2e+02 Score=28.60 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=29.7
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 004992 650 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 681 (720)
Q Consensus 650 i~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 681 (720)
++.+|+.+++..|..|+.+.|.+.|.+|+.++
T Consensus 107 i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~ 138 (279)
T 3i3n_A 107 VSTGSVHEVLELADRFLLIRLKEFCGEFLKKK 138 (279)
T ss_dssp EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHc
Confidence 57789999999999999999999999999874
No 214
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=29.21 E-value=31 Score=30.60 Aligned_cols=115 Identities=15% Similarity=0.051 Sum_probs=64.3
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHH
Q 004992 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (720)
Q Consensus 59 i~~ll~~L~~~l~~~~~d~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (720)
+|.++.++.+.+...-.|.......++....+..++...-...-.-.+|+++..+-...-.. + .+|+.|+.
T Consensus 42 lPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~--------~-~LRd~AA~ 112 (196)
T 4atg_A 42 VPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVD--------D-DVRKMSAD 112 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCC--------H-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCH--------H-HHHHHHHH
Confidence 45555555555432223555566667777777665432111111235677777664433310 1 79999999
Q ss_pred HHHHhc-c----ChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhh
Q 004992 139 ALGLLA-V----KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA 193 (720)
Q Consensus 139 ~L~~L~-~----~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~ 193 (720)
+|+.++ . .+..+.. ++..+.+.+.++..+. ...-.|+..|..+-
T Consensus 113 lL~~I~~~~~~~y~~L~~R-----I~~tl~k~l~dp~~~l------~t~YGAi~GL~~lG 161 (196)
T 4atg_A 113 IVKYIYDTYSRSYKTLAPR-----VLKTLKGVWMDPNRSE------DSQYGALYCLSILS 161 (196)
T ss_dssp HHHHHHHHHTTTSTTHHHH-----HHHHHHHHHTCTTSCH------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCccCchHHHH-----HHHHHHHHHcCCCCCh------HHHHHHHHHHHHhH
Confidence 999999 2 1333333 4566666666654432 55566666666554
No 215
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=28.96 E-value=95 Score=25.77 Aligned_cols=73 Identities=4% Similarity=-0.081 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHHhhcCCcccchhhhccCcHHHHHHhhcC---CC--------chhhhhHHHHHHH
Q 004992 450 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS---TN--------PKQQLDGAVALFK 518 (720)
Q Consensus 450 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~---~~--------~~v~~~a~~aL~~ 518 (720)
..++..|.+-+.+.++.++..|+.+|-.|+..........-..-+..+..+.+. ++ ..||..|.+++.-
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 457888888899999999999999999999776533221111122333334332 22 2477777766665
Q ss_pred HHhh
Q 004992 519 LANK 522 (720)
Q Consensus 519 L~~~ 522 (720)
|-..
T Consensus 128 l~d~ 131 (140)
T 1vdy_A 128 IFSE 131 (140)
T ss_dssp HTCC
T ss_pred HhCc
Confidence 5543
No 216
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=28.70 E-value=48 Score=32.68 Aligned_cols=105 Identities=7% Similarity=-0.013 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHHcC-ChHHHHHHHhccCCCccchhhhHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 004992 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (720)
Q Consensus 130 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (720)
+..+..+++++.|+..++.....+.... ....+++.+...-..........++..++..+.|++......+. ....
T Consensus 213 ~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el 289 (362)
T 3l3f_X 213 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 289 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTH
T ss_pred hhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 3788999999999997777555545332 23344444432221111111227888888999999852111110 0123
Q ss_pred cHHHHHhhc---------CCCHHHHHHHHHHHHHhccC
Q 004992 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAFK 237 (720)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~ 237 (720)
...+...+. ..+++....++-+|++|...
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 345555554 25789999999999999963
No 217
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=27.46 E-value=2.9e+02 Score=24.37 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=65.6
Q ss_pred CChHHHHHhhcc------CChHHHHHHHHHHHHHhccCcchhhHHHhcCChHHHHHHhcC---CCHHHHHHHHHHHHHHh
Q 004992 291 GALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLA 361 (720)
Q Consensus 291 ~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~L~~l~ 361 (720)
.++|.++.++.+ .+...-...+.+...+..+..-.....+ +.++|.++.++-. ....+|+.|+..|..++
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYl-H~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYL-HQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGH-HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHH-HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 467777777653 2455666667777777653333333333 3477888887632 33389999999999999
Q ss_pred hhhcCcchhhhhhhcCCHHHHHHHhcC--CChhHHHHHHHHHHhcc
Q 004992 362 QVITDMHNQAGIAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLA 405 (720)
Q Consensus 362 ~~~~~~~~~~~l~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~ 405 (720)
...+.. ..-....+...+.+.+.+ .+......|...|..+.
T Consensus 119 ~~~~~~---y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 119 DTYSRS---YKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHTTT---STTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHhCcc---CchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 833211 111223344455555543 34556667777776665
No 218
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=25.65 E-value=2.3e+02 Score=23.33 Aligned_cols=80 Identities=6% Similarity=0.021 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCcc---cChhhHHHHHHHHhhhCh---------------HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 004992 602 EVFELMMRFIYTGSVD---VTLDIAQDLLRAADQYLL---------------EGLKRLCEYTIAQDISLENVSSMYELSE 663 (720)
Q Consensus 602 ~~~~~~l~~~Yt~~~~---~~~~~~~~ll~~A~~~~~---------------~~l~~~c~~~l~~~i~~~~~~~~~~~a~ 663 (720)
..++.++.-.-.+.++ ++...+..++..+.+..- ..+.+--.+|+ .++.+++++++..|.
T Consensus 25 ~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~vd~~~l~eLi~AAn 102 (141)
T 1fs1_B 25 VTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAAN 102 (141)
T ss_dssp HHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHH--hCCHHHHHHHHHHHH
Confidence 4566666542123344 456667777777766541 11222223344 389999999999999
Q ss_pred HcCcHHHHHHHHHHHHHHHH
Q 004992 664 AFHAISLRHTCILYIMEHFD 683 (720)
Q Consensus 664 ~~~~~~L~~~~~~~i~~~~~ 683 (720)
-.+...|.+.|.+++.....
T Consensus 103 yL~I~~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 103 YLDIKGLLDVTCKTVANMIK 122 (141)
T ss_dssp HHTCHHHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHHHHc
Confidence 99999999999999987653
No 219
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=25.62 E-value=1.7e+02 Score=30.03 Aligned_cols=202 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred cCCCCCccccchhcccchhhhccchhhh--hhhhhhhccccCCCCCchHHHH--HHHHHHHHHHHhhccccchHHhHHHH
Q 004992 5 RRQGPSVPERKGQKRKLDEETVIGDEQQ--QMQQREISSSSAGTSSSDARQA--LLSEVSAQVNVLNTTFSWLEADRAAA 80 (720)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~m~~~~~~~~~~~~~~~~~~~~--~~~~i~~ll~~L~~~l~~~~~d~~~~ 80 (720)
|+..-.+.+.+.....+++.....+.++ +..+..+....-........+. ....++.+-+.|.+.-....-|+...
T Consensus 17 ~~~~~~~~~~~~i~~ll~~L~t~~e~~~~p~~in~Lie~~~LnL~~~t~~~~~~~~~ll~~Ik~iL~~~~~~~~lD~~~L 96 (500)
T 3vld_A 17 RGSHMSEKETNYVENLLTQLENELNEDNLPEDINTLLRKCSLNLVTVVSLPDMDVKPLLATIKRFLTSNVSYDSLNYDYL 96 (500)
T ss_dssp ------------CHHHHHHHHHHHHTSSCCTTHHHHHHHHHHHHHHSCSCCSCCCHHHHHHHHHHHHCSSCCTTCCHHHH
T ss_pred CCcchhhhhhhHHHHHHHHHHhhhccCCCCchhHHHHHHHhhcchhcccCCcccHHHHHHHHHHHHcCCccccccCHHHH
Q ss_pred HHHHHHHHHHccChhhHHHHHhCCChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhccChhhHHHHHHcCChH
Q 004992 81 KRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALS 160 (720)
Q Consensus 81 ~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~ 160 (720)
..-+..+...+.-++..+.+ -++.++..|.++.. .+...|++++. ....+..+...+++.
T Consensus 97 i~Ll~~il~~~~Fd~VLevy----sve~i~~aL~S~~~------------~l~~~~ckVI~----~s~pk~lfa~t~iid 156 (500)
T 3vld_A 97 LDVVDKLVPMADFDDVLEVY----SAEDLVKALRSEID------------PLKVAACRVIE----NSQPKGLFATSNIID 156 (500)
T ss_dssp HHHHHHHHHHSCHHHHHHHS----CHHHHHHHHTSSCH------------HHHHHHHHHHH----TCSSGGGGTTSSHHH
T ss_pred HHHHHHHHhcCCHHHHHHhC----CHHHHHHHHhcCCh------------HHHHHHHHHhc----ccCchhHhccChHHH
Q ss_pred HHHHHHhccCCCccchhhhH-HHHHHHHHHHHhhhcCchhhHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004992 161 HLVNLLKRHMDSNCSRAVNS-VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (720)
Q Consensus 161 ~L~~lL~~~~~~~~~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (720)
.+++++-+.+.+. . +....=.++..++. ++-.++.+. ....|.+...=+..++.+....+..+.-+
T Consensus 157 iLL~lyFd~~t~i------~~vvn~IE~~~~~Lss-deLirrril-~nnl~lL~~vK~~~~~i~~sRLLdll~il 223 (500)
T 3vld_A 157 ILLDILFDEKVEN------DKLITAIEKALERLST-DELIRRRLF-DNNLPYLVSVKGRMETVSFVRLIDFLTIE 223 (500)
T ss_dssp HHHHHHTCTTCCC------HHHHHHHHHHHHHHTT-SHHHHHHHH-TTTHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCc------HHHHHHHHHHHHHcCc-hHHHHHHHH-HHhHHHHHHHhcCCCceeHHHHHHHHHHH
No 220
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=24.03 E-value=59 Score=16.99 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCcHHHHHHHHH
Q 004992 656 SSMYELSEAFHAISLRHTCIL 676 (720)
Q Consensus 656 ~~~~~~a~~~~~~~L~~~~~~ 676 (720)
+.++.+|..+..++|...|++
T Consensus 2 ckvmcyaqrhsspellrrcld 22 (26)
T 2plx_B 2 CKVMCYAQRHSSPELLRRCLD 22 (26)
T ss_dssp HHHHHHHBCCCCHHHHHHHHH
T ss_pred ceEEeehhhcCCHHHHHHHHh
Confidence 356667777888888887765
No 221
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=23.83 E-value=3.5e+02 Score=23.22 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=57.6
Q ss_pred ChhcHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCCcchHHHHHHcCChHHHHHhhccC--ChHHHH
Q 004992 238 NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQR 309 (720)
Q Consensus 238 ~~~~~~~i~~~g~l~~L~~ll~~------~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~ 309 (720)
....+..+++.|++..+-..|.. ++-.+|...+.+|.+| |-....+..+|+-..++.+-.+. .++.++
T Consensus 65 k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvV~~l~k~~~et~~nkr 140 (170)
T 3nfq_A 65 KANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----PVKTEHLKESGLGRVVIFYTKSKRVEAQLAR 140 (170)
T ss_dssp CGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHSHHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----CCCHHHHhhCCCCceeeehhcCCcccHHHHH
Confidence 46667888899999999998864 4568999999999998 33356666777666666555544 467777
Q ss_pred HHHHHHHHHh
Q 004992 310 EAALLLGQFA 319 (720)
Q Consensus 310 ~a~~~L~~l~ 319 (720)
-|-..+...+
T Consensus 141 la~~Li~~Ws 150 (170)
T 3nfq_A 141 LAEKLIAEWT 150 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 222
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.48 E-value=65 Score=29.24 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=51.6
Q ss_pred ChHHHHHhhcCCCCcccccCCCcchHHHHHHHHHHHHHhc-c-ChhhHHHHHHcCChHHHHHHHhccCCCccchhhhHHH
Q 004992 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (720)
Q Consensus 105 ~i~~L~~ll~~~~~~~~~~~~~~~~~~v~~~a~~~L~~L~-~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~~~~~v~ 182 (720)
++..|..-|.+.+. .++..|+.+|..+. + ++.++..+....++..|+.++.+..+. +|+
T Consensus 43 a~r~l~krl~~~n~------------~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~-------~Vk 103 (220)
T 1dvp_A 43 AFAAIKKKMNSPNP------------HSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHE-------NVR 103 (220)
T ss_dssp HHHHHHHHHTCSSH------------HHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCH-------HHH
T ss_pred HHHHHHHHHcCCCH------------HHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcH-------HHH
Confidence 34455666666655 88999999999888 3 466777877778889999888763322 888
Q ss_pred HHHHHHHHHhhh
Q 004992 183 RRAADAITNLAH 194 (720)
Q Consensus 183 ~~a~~~L~~l~~ 194 (720)
..++..+...+.
T Consensus 104 ~kil~li~~W~~ 115 (220)
T 1dvp_A 104 QKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877776664
No 223
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=21.48 E-value=3.5e+02 Score=22.46 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=58.5
Q ss_pred CchhhHHHHhcCCcHHHHHhhcC------CCHHHHHHHHHHHHHhccCChhcHHHHHhCCCHHHHHHhhcC--CCHHHHH
Q 004992 196 NSSIKTRVRMEGGIPPLVELLEF------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHY 267 (720)
Q Consensus 196 ~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~v~~ 267 (720)
....+..+.+.|++..+-..|.. ++..+|...+.+|..+- ..++.+.++|+-..++.+-++ +.++.+.
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 44456778889999999888752 46899999999999885 347778888777777666655 4567888
Q ss_pred HHHHHHHHhh
Q 004992 268 EAVGVIGNLV 277 (720)
Q Consensus 268 ~a~~~L~nL~ 277 (720)
.|-..+...+
T Consensus 126 la~~Li~~Ws 135 (145)
T 2xpp_A 126 SAKALVQKWT 135 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776654
No 224
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.46 E-value=1.1e+02 Score=27.82 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=53.8
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcCcchhhhhhhcCCHHHHHHHhc-CCChhHHHHHHHHHHhccc
Q 004992 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLAD 406 (720)
Q Consensus 334 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~l~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~ 406 (720)
++..|.+-|.+.++.++..|+..|-.+.... +......+....++..|.+++. ..+..|+..++..+...+.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNc-G~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNC-GAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-HHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4567777888899999999999999999832 2334456666677888888874 4567888888888777653
Done!