Query 004993
Match_columns 720
No_of_seqs 745 out of 4429
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 16:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.8E-83 3.8E-88 780.8 56.2 672 3-690 265-1099(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.5E-55 5.4E-60 507.6 20.7 490 3-499 225-784 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.3E-30 5E-35 270.8 7.5 209 3-211 64-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.8E-25 3.8E-30 272.5 14.4 290 248-545 41-333 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.5E-23 3.3E-28 255.5 12.3 265 280-544 144-428 (968)
6 KOG4194 Membrane glycoprotein 99.9 1.9E-23 4.2E-28 219.0 -4.0 282 257-543 154-439 (873)
7 KOG4194 Membrane glycoprotein 99.8 7.3E-21 1.6E-25 199.8 7.9 259 279-546 81-367 (873)
8 KOG0444 Cytoskeletal regulator 99.8 7E-21 1.5E-25 200.8 -4.0 258 274-545 78-340 (1255)
9 KOG0444 Cytoskeletal regulator 99.7 4.9E-20 1.1E-24 194.5 -4.2 218 278-507 128-373 (1255)
10 PLN03210 Resistant to P. syrin 99.7 7.2E-17 1.6E-21 197.8 18.6 112 416-529 778-902 (1153)
11 PRK15387 E3 ubiquitin-protein 99.7 2.6E-16 5.7E-21 179.8 15.1 239 281-545 206-470 (788)
12 KOG0472 Leucine-rich repeat pr 99.7 3.7E-19 7.9E-24 179.7 -8.1 238 290-533 196-541 (565)
13 KOG0472 Leucine-rich repeat pr 99.6 6.8E-18 1.5E-22 170.6 -5.4 233 295-543 86-320 (565)
14 PRK15370 E3 ubiquitin-protein 99.6 6.9E-15 1.5E-19 169.3 12.2 214 301-534 200-429 (754)
15 KOG0617 Ras suppressor protein 99.6 7.3E-17 1.6E-21 145.2 -4.1 151 323-475 32-184 (264)
16 KOG0617 Ras suppressor protein 99.6 1.5E-16 3.3E-21 143.2 -3.5 190 336-537 23-216 (264)
17 PRK15370 E3 ubiquitin-protein 99.5 3.6E-14 7.9E-19 163.3 10.1 202 300-534 178-381 (754)
18 KOG4237 Extracellular matrix p 99.5 4.4E-16 9.6E-21 157.5 -6.0 246 278-532 69-358 (498)
19 PRK15387 E3 ubiquitin-protein 99.5 1.8E-13 4E-18 156.6 14.3 207 300-534 201-416 (788)
20 KOG0618 Serine/threonine phosp 99.5 2.4E-15 5.1E-20 167.0 -4.7 237 280-531 245-487 (1081)
21 KOG4237 Extracellular matrix p 99.4 6.6E-15 1.4E-19 149.1 -5.1 78 460-545 270-347 (498)
22 KOG0618 Serine/threonine phosp 99.4 5.9E-14 1.3E-18 156.0 0.6 252 280-545 25-288 (1081)
23 cd00116 LRR_RI Leucine-rich re 99.4 5.3E-14 1.1E-18 149.4 -2.3 245 294-542 17-300 (319)
24 cd00116 LRR_RI Leucine-rich re 99.3 1.1E-13 2.3E-18 147.0 -3.4 231 293-531 44-318 (319)
25 KOG0532 Leucine-rich repeat (L 99.0 1.9E-11 4.1E-16 129.6 -5.1 173 298-476 73-246 (722)
26 KOG0532 Leucine-rich repeat (L 99.0 1.6E-11 3.4E-16 130.3 -6.4 174 323-510 74-248 (722)
27 KOG3207 Beta-tubulin folding c 98.9 1.7E-10 3.7E-15 119.1 0.8 106 273-379 120-232 (505)
28 COG4886 Leucine-rich repeat (L 98.9 7.8E-10 1.7E-14 121.1 5.6 149 323-474 115-265 (394)
29 KOG1259 Nischarin, modulator o 98.9 2.8E-10 6.1E-15 111.8 1.5 133 368-512 283-415 (490)
30 PF14580 LRR_9: Leucine-rich r 98.9 7.7E-10 1.7E-14 104.7 3.8 134 335-471 8-147 (175)
31 KOG3207 Beta-tubulin folding c 98.9 1.6E-10 3.5E-15 119.3 -1.0 208 297-511 118-341 (505)
32 COG4886 Leucine-rich repeat (L 98.9 7.9E-10 1.7E-14 121.1 4.1 199 328-540 97-297 (394)
33 PF14580 LRR_9: Leucine-rich r 98.9 1.4E-09 3.1E-14 102.9 3.6 126 297-423 16-147 (175)
34 KOG4658 Apoptotic ATPase [Sign 98.8 6.1E-10 1.3E-14 130.7 0.5 151 297-450 520-678 (889)
35 PLN03150 hypothetical protein; 98.8 1E-08 2.2E-13 117.9 7.9 88 394-481 420-507 (623)
36 PLN03150 hypothetical protein; 98.7 3E-08 6.4E-13 114.2 6.7 108 371-478 420-529 (623)
37 KOG1259 Nischarin, modulator o 98.6 7.9E-09 1.7E-13 101.7 -1.0 129 323-454 283-413 (490)
38 PRK15386 type III secretion pr 98.5 3.8E-07 8.2E-12 96.7 10.2 54 323-380 51-105 (426)
39 KOG0531 Protein phosphatase 1, 98.4 7.1E-08 1.5E-12 106.1 0.8 223 295-534 90-319 (414)
40 KOG1909 Ran GTPase-activating 98.4 3.9E-08 8.6E-13 99.3 -1.5 162 344-509 118-311 (382)
41 KOG0531 Protein phosphatase 1, 98.3 7.1E-08 1.5E-12 106.1 -1.3 217 298-533 70-290 (414)
42 PRK15386 type III secretion pr 98.3 2.7E-06 5.8E-11 90.4 10.3 72 297-379 49-122 (426)
43 KOG1909 Ran GTPase-activating 98.3 4.3E-08 9.4E-13 99.0 -3.8 234 295-532 25-310 (382)
44 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.7E-11 67.9 4.0 40 411-450 20-59 (61)
45 PF13855 LRR_8: Leucine rich r 98.2 1.4E-06 2.9E-11 67.7 3.5 60 416-475 1-60 (61)
46 KOG1859 Leucine-rich repeat pr 98.1 8.2E-08 1.8E-12 105.0 -6.1 20 295-314 104-123 (1096)
47 PRK04841 transcriptional regul 98.0 0.00012 2.6E-09 89.3 16.6 199 37-244 120-333 (903)
48 KOG2982 Uncharacterized conser 97.8 5.8E-06 1.3E-10 82.0 0.3 194 298-503 69-286 (418)
49 KOG2120 SCF ubiquitin ligase, 97.7 6E-07 1.3E-11 88.8 -7.5 38 438-475 311-349 (419)
50 KOG1859 Leucine-rich repeat pr 97.7 1.5E-06 3.2E-11 95.5 -5.5 24 317-340 102-125 (1096)
51 KOG2982 Uncharacterized conser 97.6 1E-05 2.2E-10 80.3 -0.7 192 280-471 75-286 (418)
52 KOG4579 Leucine-rich repeat (L 97.6 3E-06 6.4E-11 74.7 -4.6 81 323-403 52-134 (177)
53 KOG2120 SCF ubiquitin ligase, 97.4 6E-06 1.3E-10 81.9 -4.8 151 323-475 209-374 (419)
54 PF12799 LRR_4: Leucine Rich r 97.4 0.00012 2.6E-09 52.3 3.1 36 346-381 1-36 (44)
55 KOG1644 U2-associated snRNP A' 97.4 0.00028 6.1E-09 66.7 5.6 57 324-380 42-99 (233)
56 KOG4579 Leucine-rich repeat (L 97.4 6.7E-06 1.4E-10 72.5 -4.9 101 326-427 29-134 (177)
57 KOG3665 ZYG-1-like serine/thre 97.3 4.1E-05 8.8E-10 88.3 -1.2 85 297-381 145-232 (699)
58 PF12799 LRR_4: Leucine Rich r 97.3 0.00022 4.9E-09 50.9 2.7 39 324-362 1-40 (44)
59 KOG1644 U2-associated snRNP A' 97.2 0.0005 1.1E-08 65.1 5.1 100 300-401 42-149 (233)
60 KOG3665 ZYG-1-like serine/thre 97.1 0.00011 2.4E-09 84.7 0.2 102 300-402 122-230 (699)
61 COG5238 RNA1 Ran GTPase-activa 96.7 0.00031 6.7E-09 69.1 -0.7 183 345-533 29-255 (388)
62 KOG2739 Leucine-rich acidic nu 96.7 0.00076 1.6E-08 66.5 1.7 35 368-402 90-126 (260)
63 PRK06893 DNA replication initi 96.5 0.005 1.1E-07 61.8 6.2 93 40-134 93-200 (229)
64 TIGR03015 pepcterm_ATPase puta 96.4 0.11 2.4E-06 53.5 16.0 105 36-141 121-242 (269)
65 COG5238 RNA1 Ran GTPase-activa 96.3 0.001 2.2E-08 65.6 0.1 205 293-509 85-316 (388)
66 KOG2739 Leucine-rich acidic nu 96.3 0.002 4.3E-08 63.7 2.1 84 390-474 63-153 (260)
67 PF05729 NACHT: NACHT domain 96.1 0.013 2.8E-07 55.2 6.5 70 36-105 79-162 (166)
68 KOG2123 Uncharacterized conser 96.0 0.00025 5.5E-09 70.0 -5.7 78 344-422 39-123 (388)
69 KOG2123 Uncharacterized conser 95.8 0.00038 8.2E-09 68.8 -5.4 99 298-398 17-123 (388)
70 PRK00411 cdc6 cell division co 95.8 0.27 5.8E-06 53.8 16.3 178 4-189 101-308 (394)
71 PF13306 LRR_5: Leucine rich r 95.7 0.044 9.5E-07 49.2 8.0 85 291-378 3-90 (129)
72 TIGR00635 ruvB Holliday juncti 95.6 0.08 1.7E-06 55.7 10.8 150 66-224 130-288 (305)
73 PF13306 LRR_5: Leucine rich r 95.2 0.068 1.5E-06 47.9 7.3 53 345-400 11-66 (129)
74 KOG4341 F-box protein containi 95.1 0.0032 7E-08 65.9 -1.7 111 367-477 318-439 (483)
75 KOG4341 F-box protein containi 95.1 0.0012 2.5E-08 69.1 -4.9 183 297-479 187-387 (483)
76 PF00560 LRR_1: Leucine Rich R 94.1 0.032 7E-07 33.1 1.5 21 347-367 1-21 (22)
77 PF01637 Arch_ATPase: Archaeal 93.8 0.2 4.3E-06 50.0 7.8 109 26-136 104-233 (234)
78 TIGR02928 orc1/cdc6 family rep 93.7 3.1 6.7E-05 44.8 17.3 178 4-188 90-299 (365)
79 PRK00080 ruvB Holliday junctio 93.4 0.21 4.5E-06 53.2 7.4 151 66-224 151-309 (328)
80 KOG1947 Leucine rich repeat pr 93.2 0.0076 1.6E-07 67.7 -4.2 108 298-405 186-308 (482)
81 PF13173 AAA_14: AAA domain 92.1 0.29 6.2E-06 44.1 5.4 70 29-98 52-127 (128)
82 PRK07471 DNA polymerase III su 91.9 2.1 4.5E-05 46.1 12.5 96 37-138 140-239 (365)
83 COG3899 Predicted ATPase [Gene 91.4 1.1 2.3E-05 53.9 10.7 172 31-205 146-336 (849)
84 PRK05564 DNA polymerase III su 91.1 2.6 5.7E-05 44.4 12.3 95 37-137 93-190 (313)
85 PF00560 LRR_1: Leucine Rich R 90.9 0.12 2.5E-06 30.7 1.0 9 442-450 2-10 (22)
86 COG2909 MalT ATP-dependent tra 90.5 2.3 5E-05 49.4 11.5 203 28-245 117-340 (894)
87 PF13504 LRR_7: Leucine rich r 90.3 0.19 4.1E-06 27.7 1.4 12 348-359 3-14 (17)
88 PRK09087 hypothetical protein; 90.3 1.4 3.1E-05 44.0 8.8 91 40-135 89-193 (226)
89 KOG1947 Leucine rich repeat pr 89.8 0.047 1E-06 61.2 -2.5 39 439-477 268-308 (482)
90 TIGR03420 DnaA_homol_Hda DnaA 89.8 0.85 1.8E-05 45.4 6.8 96 40-137 92-201 (226)
91 PF13504 LRR_7: Leucine rich r 89.6 0.21 4.6E-06 27.5 1.3 16 325-340 2-17 (17)
92 KOG0473 Leucine-rich repeat pr 89.1 0.016 3.6E-07 56.1 -5.7 91 293-384 35-126 (326)
93 TIGR00678 holB DNA polymerase 88.7 2.2 4.8E-05 41.1 8.7 89 37-133 95-187 (188)
94 PRK08727 hypothetical protein; 87.7 1.4 3.1E-05 44.2 6.8 93 39-133 94-200 (233)
95 PRK13342 recombination factor 87.0 2.6 5.6E-05 46.4 8.9 99 36-137 90-196 (413)
96 KOG0473 Leucine-rich repeat pr 85.9 0.036 7.9E-07 53.8 -5.4 86 365-452 38-123 (326)
97 TIGR02397 dnaX_nterm DNA polym 85.3 9.8 0.00021 40.7 12.3 99 37-137 116-218 (355)
98 PRK06645 DNA polymerase III su 85.3 3.9 8.4E-05 46.0 9.2 97 36-134 126-226 (507)
99 KOG4308 LRR-containing protein 84.1 0.025 5.4E-07 62.8 -8.6 36 302-337 89-128 (478)
100 PRK14963 DNA polymerase III su 83.6 10 0.00022 42.7 11.7 96 37-134 115-214 (504)
101 KOG3864 Uncharacterized conser 83.5 0.25 5.4E-06 47.3 -1.0 62 274-335 99-162 (221)
102 KOG4308 LRR-containing protein 83.5 0.014 3E-07 64.8 -11.0 21 293-313 108-128 (478)
103 TIGR02903 spore_lon_C ATP-depe 83.3 3 6.6E-05 48.2 7.5 112 27-140 281-398 (615)
104 PRK09112 DNA polymerase III su 83.1 6.2 0.00013 42.2 9.3 98 37-138 140-241 (351)
105 PRK06620 hypothetical protein; 82.8 5.7 0.00012 39.3 8.3 67 39-107 86-161 (214)
106 PRK14961 DNA polymerase III su 82.7 16 0.00034 39.4 12.4 96 37-134 118-217 (363)
107 COG3903 Predicted ATPase [Gene 82.4 0.8 1.7E-05 48.7 2.1 194 27-225 77-292 (414)
108 KOG3864 Uncharacterized conser 82.0 0.29 6.3E-06 46.8 -1.1 64 410-473 119-185 (221)
109 smart00370 LRR Leucine-rich re 81.4 0.99 2.1E-05 27.8 1.5 19 346-364 2-20 (26)
110 smart00369 LRR_TYP Leucine-ric 81.4 0.99 2.1E-05 27.8 1.5 19 346-364 2-20 (26)
111 PRK08084 DNA replication initi 80.4 5.4 0.00012 40.1 7.3 90 40-133 99-205 (235)
112 TIGR01242 26Sp45 26S proteasom 79.8 4.1 9E-05 43.9 6.7 91 37-131 214-328 (364)
113 PRK05642 DNA replication initi 79.8 6.7 0.00015 39.3 7.8 91 41-133 100-204 (234)
114 PRK07003 DNA polymerase III su 79.7 22 0.00048 41.7 12.5 98 37-136 118-220 (830)
115 PRK14959 DNA polymerase III su 78.8 12 0.00026 42.9 10.1 104 36-141 117-225 (624)
116 PRK12402 replication factor C 76.2 10 0.00022 40.1 8.5 96 37-134 124-223 (337)
117 KOG0989 Replication factor C, 76.0 14 0.00031 38.0 8.6 129 41-172 132-267 (346)
118 smart00369 LRR_TYP Leucine-ric 73.1 2.5 5.4E-05 25.9 1.6 20 323-342 1-20 (26)
119 smart00370 LRR Leucine-rich re 73.1 2.5 5.4E-05 25.9 1.6 20 323-342 1-20 (26)
120 PRK07940 DNA polymerase III su 72.4 18 0.00038 39.4 9.0 94 37-137 116-213 (394)
121 PRK14087 dnaA chromosomal repl 71.9 27 0.00058 38.9 10.4 97 39-135 207-317 (450)
122 PLN03025 replication factor C 71.7 20 0.00043 37.9 9.1 95 37-133 98-196 (319)
123 PRK12323 DNA polymerase III su 71.7 11 0.00023 43.5 7.2 100 36-137 122-225 (700)
124 PRK05707 DNA polymerase III su 70.9 18 0.00038 38.4 8.4 93 38-137 107-203 (328)
125 PRK06090 DNA polymerase III su 70.5 37 0.0008 35.8 10.5 106 38-156 108-217 (319)
126 PF14516 AAA_35: AAA-like doma 70.2 49 0.0011 35.1 11.7 54 85-144 193-246 (331)
127 PTZ00112 origin recognition co 70.1 15 0.00032 43.7 7.9 171 6-184 834-1027(1164)
128 COG2256 MGS1 ATPase related to 69.5 15 0.00031 39.4 7.1 97 34-133 100-208 (436)
129 PF00308 Bac_DnaA: Bacterial d 69.4 11 0.00024 37.4 6.2 77 29-108 89-181 (219)
130 PF13401 AAA_22: AAA domain; P 68.5 9.2 0.0002 34.0 5.0 70 3-75 52-125 (131)
131 PF07725 LRR_3: Leucine Rich R 67.9 4 8.8E-05 23.6 1.5 19 347-365 1-19 (20)
132 cd00561 CobA_CobO_BtuR ATP:cor 67.4 6.6 0.00014 36.7 3.8 65 28-92 84-154 (159)
133 PRK00440 rfc replication facto 67.0 30 0.00064 36.3 9.3 95 38-134 102-200 (319)
134 PRK14955 DNA polymerase III su 66.5 13 0.00028 40.6 6.5 96 37-134 126-225 (397)
135 PRK08903 DnaA regulatory inact 66.4 14 0.0003 36.8 6.3 99 40-140 92-202 (227)
136 PRK14957 DNA polymerase III su 66.1 27 0.00058 39.7 9.0 100 36-137 117-221 (546)
137 PRK14956 DNA polymerase III su 66.1 24 0.00052 39.2 8.3 97 36-134 119-219 (484)
138 PRK08691 DNA polymerase III su 65.9 24 0.00051 41.1 8.5 96 37-134 118-217 (709)
139 PRK13341 recombination factor 65.4 24 0.00052 41.7 8.7 92 37-131 108-211 (725)
140 PRK06964 DNA polymerase III su 65.2 91 0.002 33.2 12.3 92 37-138 131-226 (342)
141 PRK14962 DNA polymerase III su 64.5 31 0.00067 38.6 9.0 101 37-139 116-221 (472)
142 smart00364 LRR_BAC Leucine-ric 64.2 4.5 9.8E-05 25.1 1.3 17 347-363 3-19 (26)
143 PF02463 SMC_N: RecF/RecN/SMC 63.6 6.3 0.00014 39.0 3.1 51 38-90 158-211 (220)
144 PRK14960 DNA polymerase III su 61.0 41 0.00089 39.0 9.2 97 37-135 117-217 (702)
145 PRK14949 DNA polymerase III su 59.9 42 0.00091 40.2 9.2 98 36-135 117-218 (944)
146 PRK07399 DNA polymerase III su 59.8 61 0.0013 34.1 9.8 96 37-137 123-221 (314)
147 PRK14970 DNA polymerase III su 59.5 31 0.00067 37.2 7.8 94 37-132 107-204 (367)
148 PF13516 LRR_6: Leucine Rich r 59.5 4.9 0.00011 24.1 0.9 21 520-540 2-22 (24)
149 PRK08451 DNA polymerase III su 57.8 66 0.0014 36.5 10.1 97 37-135 116-216 (535)
150 smart00365 LRR_SD22 Leucine-ri 57.7 7.9 0.00017 24.0 1.6 16 346-361 2-17 (26)
151 PRK14964 DNA polymerase III su 57.4 46 0.00099 37.3 8.7 95 37-133 115-213 (491)
152 PRK07994 DNA polymerase III su 57.4 35 0.00077 39.5 8.1 99 36-136 117-219 (647)
153 PRK07764 DNA polymerase III su 57.4 1.2E+02 0.0025 36.6 12.6 95 37-133 119-217 (824)
154 PRK06305 DNA polymerase III su 56.7 86 0.0019 34.9 10.8 94 37-132 120-217 (451)
155 COG1373 Predicted ATPase (AAA+ 56.6 42 0.00092 36.6 8.2 65 38-103 94-164 (398)
156 PRK14954 DNA polymerase III su 55.6 49 0.0011 38.3 8.8 94 37-132 126-223 (620)
157 PRK14971 DNA polymerase III su 55.2 50 0.0011 38.3 8.9 95 37-133 120-218 (614)
158 PRK08769 DNA polymerase III su 54.9 46 0.001 35.1 7.8 94 37-138 112-209 (319)
159 PRK14086 dnaA chromosomal repl 54.8 59 0.0013 37.4 9.1 66 41-108 380-461 (617)
160 PRK04195 replication factor C 54.7 61 0.0013 36.5 9.4 94 38-135 98-200 (482)
161 PRK14950 DNA polymerase III su 54.4 63 0.0014 37.3 9.6 97 37-135 119-219 (585)
162 PRK14951 DNA polymerase III su 54.4 80 0.0017 36.6 10.2 96 38-135 124-223 (618)
163 smart00367 LRR_CC Leucine-rich 49.6 13 0.00028 22.8 1.7 14 464-477 2-15 (26)
164 TIGR00362 DnaA chromosomal rep 49.2 1.2E+02 0.0026 33.1 10.5 91 40-132 201-305 (405)
165 PRK06871 DNA polymerase III su 48.9 83 0.0018 33.3 8.6 92 37-135 106-201 (325)
166 PRK07133 DNA polymerase III su 48.7 1.2E+02 0.0027 35.6 10.6 94 37-132 117-214 (725)
167 PRK09111 DNA polymerase III su 47.9 79 0.0017 36.5 8.9 96 38-135 132-231 (598)
168 PRK14088 dnaA chromosomal repl 46.7 63 0.0014 35.8 7.7 89 38-130 194-298 (440)
169 PRK05896 DNA polymerase III su 45.9 57 0.0012 37.4 7.3 97 38-137 120-221 (605)
170 PRK05986 cob(I)alamin adenolsy 45.2 26 0.00055 33.8 3.8 66 27-92 103-174 (191)
171 PRK06647 DNA polymerase III su 45.1 1.2E+02 0.0026 34.8 9.8 97 36-134 117-217 (563)
172 cd00009 AAA The AAA+ (ATPases 44.7 40 0.00086 29.9 5.0 43 35-77 81-131 (151)
173 PHA02544 44 clamp loader, smal 44.0 1.9E+02 0.0041 30.2 10.7 68 37-104 99-171 (316)
174 PRK14952 DNA polymerase III su 43.1 1.2E+02 0.0025 35.0 9.2 94 37-132 117-214 (584)
175 PRK14969 DNA polymerase III su 42.6 80 0.0017 35.9 7.9 95 37-133 118-216 (527)
176 TIGR02880 cbbX_cfxQ probable R 42.1 1.3E+02 0.0028 31.2 8.8 69 39-107 122-209 (284)
177 PRK14948 DNA polymerase III su 41.4 1.5E+02 0.0032 34.6 9.9 98 37-136 120-221 (620)
178 TIGR00708 cobA cob(I)alamin ad 41.1 29 0.00064 32.9 3.5 66 27-92 85-156 (173)
179 PRK07414 cob(I)yrinic acid a,c 40.0 37 0.00081 32.3 3.9 65 27-91 103-173 (178)
180 PRK07132 DNA polymerase III su 39.6 3.2E+02 0.0068 28.5 11.2 92 37-136 89-184 (299)
181 PRK14953 DNA polymerase III su 38.8 2E+02 0.0043 32.4 10.1 97 36-134 117-217 (486)
182 PRK12422 chromosomal replicati 38.7 1.1E+02 0.0023 34.0 8.0 67 39-107 203-285 (445)
183 PRK14958 DNA polymerase III su 38.0 1.5E+02 0.0032 33.6 9.1 96 37-134 118-217 (509)
184 COG1474 CDC6 Cdc6-related prot 36.9 3.4E+02 0.0073 29.3 11.2 130 5-137 89-238 (366)
185 PRK04132 replication factor C 36.8 1.9E+02 0.0041 34.9 9.9 96 38-135 630-729 (846)
186 PRK03992 proteasome-activating 36.4 1.2E+02 0.0027 32.9 7.9 73 37-109 223-318 (389)
187 PF07693 KAP_NTPase: KAP famil 36.4 1.9E+02 0.004 30.3 9.3 79 25-105 157-262 (325)
188 PRK00149 dnaA chromosomal repl 36.2 1.2E+02 0.0027 33.6 8.1 92 39-132 212-317 (450)
189 KOG0741 AAA+-type ATPase [Post 36.1 73 0.0016 35.6 5.8 79 31-109 591-690 (744)
190 TIGR01128 holA DNA polymerase 34.9 2.3E+02 0.0049 29.3 9.5 97 35-133 43-149 (302)
191 TIGR02881 spore_V_K stage V sp 34.8 1.3E+02 0.0028 30.6 7.4 67 40-108 107-193 (261)
192 PRK07993 DNA polymerase III su 34.7 1.6E+02 0.0035 31.3 8.2 94 37-137 107-204 (334)
193 KOG3763 mRNA export factor TAP 32.3 21 0.00045 39.7 1.1 39 368-406 243-284 (585)
194 PF06144 DNA_pol3_delta: DNA p 31.0 1.6E+02 0.0035 27.4 6.9 96 37-134 56-163 (172)
195 PRK14965 DNA polymerase III su 31.0 1.3E+02 0.0028 34.8 7.2 93 37-131 118-214 (576)
196 PRK08058 DNA polymerase III su 29.5 2.9E+02 0.0063 29.2 9.2 68 37-104 109-180 (329)
197 PRK05563 DNA polymerase III su 29.3 2.9E+02 0.0062 31.8 9.6 97 36-134 117-217 (559)
198 COG2109 BtuR ATP:corrinoid ade 29.0 65 0.0014 30.9 3.6 51 27-77 110-166 (198)
199 KOG2227 Pre-initiation complex 28.6 1.6E+02 0.0035 32.5 6.9 133 5-138 222-373 (529)
200 smart00368 LRR_RI Leucine rich 28.3 41 0.0009 21.0 1.5 12 347-358 3-14 (28)
201 COG0396 sufC Cysteine desulfur 27.8 86 0.0019 31.2 4.3 63 28-90 152-218 (251)
202 PF02572 CobA_CobO_BtuR: ATP:c 27.7 44 0.00096 31.6 2.3 66 26-91 83-154 (172)
203 PTZ00454 26S protease regulato 27.5 3.1E+02 0.0068 29.9 9.1 72 36-107 236-330 (398)
204 COG0593 DnaA ATPase involved i 26.8 1.5E+02 0.0032 32.3 6.3 68 39-108 176-259 (408)
205 PF13177 DNA_pol3_delta2: DNA 26.5 69 0.0015 29.9 3.4 57 38-94 102-162 (162)
206 PRK07413 hypothetical protein; 25.3 89 0.0019 33.7 4.3 65 27-93 293-366 (382)
207 CHL00181 cbbX CbbX; Provisiona 25.1 4.6E+02 0.01 27.1 9.5 69 40-108 124-211 (287)
208 PRK07452 DNA polymerase III su 24.8 3.7E+02 0.0079 28.2 9.0 94 37-134 60-169 (326)
209 CHL00176 ftsH cell division pr 23.5 8.4E+02 0.018 28.5 12.1 79 30-108 267-368 (638)
210 PTZ00361 26 proteosome regulat 22.6 1.3E+02 0.0028 33.3 5.1 73 36-108 274-369 (438)
211 PRK08699 DNA polymerase III su 22.3 5.2E+02 0.011 27.3 9.4 85 38-133 114-202 (325)
212 PRK00409 recombination and DNA 22.2 78 0.0017 37.9 3.5 112 37-158 406-527 (782)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.8e-83 Score=780.78 Aligned_cols=672 Identities=35% Similarity=0.535 Sum_probs=542.1
Q ss_pred hHHHHHHHHHHhCCCCCCccccccchHHHHHhcCCCeEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCChhHHhhc
Q 004993 3 AHLRQELLSTLLNDDGNVKIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINC 82 (720)
Q Consensus 3 ~~lq~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~ 82 (720)
.++|+++++++++.....+. ....++++|++||+||||||||+.++|+.+++...|+++|||||||||+++++..+
T Consensus 265 ~~l~~~~l~~il~~~~~~~~----~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~ 340 (1153)
T PLN03210 265 LHLQRAFLSEILDKKDIKIY----HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAH 340 (1153)
T ss_pred HHHHHHHHHHHhCCCCcccC----CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhc
Confidence 56889999999887643311 23678999999999999999999999999999999999999999999999999988
Q ss_pred CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCCCHHHHHHHHHHHhcCCCc
Q 004993 83 WADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLETVPHM 162 (720)
Q Consensus 83 ~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~~~ 162 (720)
+++++|+|+.|+++|||+||+++||++..+++++++++++|+++|+|+||||+++|++|++++.++|+.++++|+..++.
T Consensus 341 ~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~ 420 (1153)
T PLN03210 341 GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDG 420 (1153)
T ss_pred CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccH
Confidence 88999999999999999999999999888888899999999999999999999999999999999999999999998889
Q ss_pred hHHHHHHHhhcCCCh-hhhhhhcccccccCCCCHHHHHHHHHhCCCCcccchhhhhcccceEEeCCeEEeeHHHHHHHHH
Q 004993 163 EIQDVLKISYDGLDY-VEQAMFLDIACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITISCNKIRMHDLLQDMGRK 241 (720)
Q Consensus 163 ~i~~~l~~syd~L~~-~~k~~fl~~a~f~~~~~~~~l~~~w~~~g~~~~~~~~~L~~~~li~~~~~~~~mHdLl~d~~~~ 241 (720)
+|.++|++|||+|++ .+|.||+||||||.+++++++..++.++++.++.+++.|++++||+++.++++|||++|+||++
T Consensus 421 ~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~ 500 (1153)
T PLN03210 421 KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKE 500 (1153)
T ss_pred HHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHH
Confidence 999999999999986 5999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HhhhhcccCCCcEEECcCcchHHHHHhhccCCcceEEEEeecCCccceecCchhhCCCCCccEEEeeCCCCcc----ccc
Q 004993 242 IDREAAINNPGKCRRLWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFK----ISH 317 (720)
Q Consensus 242 i~~~~~~~~~~~~~rL~~~~~~~~~l~~~~~~~~i~~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~----~~~ 317 (720)
++++++ .+|++++|+|.++++++++..++|+..+++|.+|++......+...+|.+|++|+.|.+..+.... ...
T Consensus 501 i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~ 579 (1153)
T PLN03210 501 IVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWH 579 (1153)
T ss_pred HHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceee
Confidence 999987 789999999999999999999999999999999999999999999999999999999997653211 112
Q ss_pred CC--ccc-ccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCccc
Q 004993 318 FE--GEA-FTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNL 394 (720)
Q Consensus 318 ~~--~~~-l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L 394 (720)
.+ +.. +.+|+.|+|.+++++.+|..+.+.+|+.|+|++|++..+|.++..+++|+.|+|++|..+..+|.++.+++|
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~L 659 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNL 659 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcc
Confidence 22 222 567999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred ceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCC------------------------
Q 004993 395 ENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC------------------------ 450 (720)
Q Consensus 395 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n------------------------ 450 (720)
+.|++++|..+..+|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc
Confidence 999999999999999999999999999999887777777654 4555555555444
Q ss_pred --------------------------------------------------CCCCccchhccCCCCCCEEcccCCcCcCcC
Q 004993 451 --------------------------------------------------SNLRRIPESIINLSKLELLHLKNCSKLLSL 480 (720)
Q Consensus 451 --------------------------------------------------~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l 480 (720)
.....+|..++++++|+.|+|++|..++.+
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 334446666777888888888888888888
Q ss_pred CCC--CCCccEEeccCCCc----------cccccCcccccccCCCCCccccccccccccch-hhHHHHHHHHHHHHHHhh
Q 004993 481 PEL--PCNLFSVGVRRCTS----------LEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQ-NELKGIAEDALQKIQQKA 547 (720)
Q Consensus 481 p~l--p~~L~~L~~~~~~~----------L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~~~ 547 (720)
|.. +++|+.|.+++|.. |+.|++++|.+. .+|.++..+++|+.|++++ |.+++. |..+..++.+.
T Consensus 819 P~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~ 896 (1153)
T PLN03210 819 PTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLE 896 (1153)
T ss_pred CCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCC
Confidence 753 56788888888744 556777788775 4566677788888887776 344432 22222222110
Q ss_pred ---hh-------------------------------------hhhhhhhccccCCCCCeeEEecCCCCCCCCccccCCCc
Q 004993 548 ---TS-------------------------------------WWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGS 587 (720)
Q Consensus 548 ---~~-------------------------------------~~~~l~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~ 587 (720)
.. .|.++..............+++||.++|+||.|++.|+
T Consensus 897 ~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~ 976 (1153)
T PLN03210 897 TVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGA 976 (1153)
T ss_pred eeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccc
Confidence 00 01111110001111223457899999999999999999
Q ss_pred EEE-EecCCCCCcCCcceeEEEEEEeeeee--------------eeeCCCceEEeecccccCCeEEEEEEecccC-----
Q 004993 588 SIE-FKPQSDWINNEYLGIAFCAVLRCRIR--------------FKIPSHDWYVRTIDYVESDHLFMGYYFFHGD----- 647 (720)
Q Consensus 588 ~i~-~~lp~~~~~~~~~g~a~c~v~~~~~~--------------~~~~~~~~~~~~~~~~~sdh~~~~y~~~~~~----- 647 (720)
+++ |.+|+.|+...|.||++|+|++|... +....+... ....++|+|+.|......
T Consensus 977 sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~ 1052 (1153)
T PLN03210 977 SLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHF----DSPYQPHVFSVTKKGSHLVIFDC 1052 (1153)
T ss_pred eeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCcc----ccCCCceeEeeeccccceEEecc
Confidence 998 99999999989999999999974432 111111111 124677888887764321
Q ss_pred -----CCCC---cchhhhheeeEEeeccccccccceEEEEeccEEEeecCC
Q 004993 648 -----KGDS---RQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDD 690 (720)
Q Consensus 648 -----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vk~cG~~liy~~~~ 690 (720)
.++. ....+.+.++|.+++.. ..++||+||||++|+.+.
T Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1053 CFPLNEDNAPLAELNYDHVDIQFRLTNKN----SQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred cccccccccchhccCCceeeEEEEEecCC----CCeEEEeeeEEEeccCCC
Confidence 0000 01123345666665422 237999999999996654
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-55 Score=507.61 Aligned_cols=490 Identities=24% Similarity=0.282 Sum_probs=336.2
Q ss_pred hHHHHHHHHHHhCCCCCC-ccccccchHHHHHhcCCCeEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCChhHHhh
Q 004993 3 AHLRQELLSTLLNDDGNV-KIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLIN 81 (720)
Q Consensus 3 ~~lq~~ll~~l~~~~~~~-~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~ 81 (720)
.++|++|+..+....... ..+.+..+..|.+.|++|||+|||||||+..+|+.++.+++...+||||++|||++.|+..
T Consensus 225 ~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~ 304 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGR 304 (889)
T ss_pred HhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhc
Confidence 478999999988855422 1234688999999999999999999999999999999999998899999999999999999
Q ss_pred -cCCCcEEEcCCCCHHHHHHHHHHhhcCC-CCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCC-CHHHHHHHHHHHhc
Q 004993 82 -CWADKIYEVKELADADALKLFSRCAFRQ-DHPVACYMELTYKIIKYAQGVPLALKVLGLFLSAR-RKEEWESAITKLET 158 (720)
Q Consensus 82 -~~~~~~~~l~~L~~~es~~LF~~~af~~-~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~-~~~~W~~~l~~L~~ 158 (720)
++++..+++++|+.+|||+||+++||.. ....++++++|++|+++|+|+|||+.++|+.|+.| +.+||+.+.+.+..
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS 384 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence 8889999999999999999999999986 34445689999999999999999999999999995 67899999999876
Q ss_pred C-----C--CchHHHHHHHhhcCCChhhhhhhcccccccCCC--CHHHHHHHHHhCCCCcc------------cchhhhh
Q 004993 159 V-----P--HMEIQDVLKISYDGLDYVEQAMFLDIACYFVGA--NKDFVINYFDASDFFPE------------IGLGRLV 217 (720)
Q Consensus 159 ~-----~--~~~i~~~l~~syd~L~~~~k~~fl~~a~f~~~~--~~~~l~~~w~~~g~~~~------------~~~~~L~ 217 (720)
. + .+.+..+|++|||.||.+.|.||||||.||+++ +++.++..|+|+||+.. .++.+|+
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 5 2 356899999999999988999999999999995 67889999999998842 2389999
Q ss_pred cccceEEeC-----CeEEeeHHHHHHHHHHhhhhcccCCCcEEECcCcchHHHHHhhccCCcceEEEEeecCCccceecC
Q 004993 218 DKSLITISC-----NKIRMHDLLQDMGRKIDREAAINNPGKCRRLWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLN 292 (720)
Q Consensus 218 ~~~li~~~~-----~~~~mHdLl~d~~~~i~~~~~~~~~~~~~rL~~~~~~~~~l~~~~~~~~i~~i~l~ls~~~~~~~~ 292 (720)
+++|+...+ .+|+|||+++|||.++++..+......+..-- ....+ .........++.+++-......+.-.
T Consensus 465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~--~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~ 541 (889)
T KOG4658|consen 465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDG--VGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGS 541 (889)
T ss_pred HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECC--cCccc-cccccchhheeEEEEeccchhhccCC
Confidence 999999874 68999999999999999843322111111000 00000 00111112334433332222111111
Q ss_pred chhhCCCCCccEEEeeCCC--CcccccCCcccccCceEEEecCCC-CCCCCCCC-CCCCccEEEccCCCcccccCCCCCC
Q 004993 293 SSTFKKMPRLRFLKFHGEN--KFKISHFEGEAFTELRYLYWDGYP-SKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNL 368 (720)
Q Consensus 293 ~~~f~~l~~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L 368 (720)
...++|++|-+.+|. ........+..++.|++||+++|. +..+|..+ ++-+|++|+++++.++.+|.++++|
T Consensus 542 ----~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L 617 (889)
T KOG4658|consen 542 ----SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNL 617 (889)
T ss_pred ----CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHH
Confidence 223357777666664 222222223336777777777655 66677766 5777777777777777777777777
Q ss_pred CCccEEecCCCcCCCCCCC-CcCCcccceeecccccc--cccccccccCCcccceeeccccc------------------
Q 004993 369 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSS--LVETHSSIQYLSKLVTLDMRLCK------------------ 427 (720)
Q Consensus 369 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~--~~~~p~~l~~l~~L~~L~L~~n~------------------ 427 (720)
.+|.+||+..+.....+|. ...+++|++|.+..-.. ....-..+.+|.+|+.+......
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH
Confidence 7777777776666555565 33477777776654320 01111222333333333332111
Q ss_pred -------cccccccccCCCCCCcEEeccCCCCCCccchhc-----c-CCCCCCEEcccCCcCcCcCC--CCCCCccEEec
Q 004993 428 -------NLNRLPSSLCELISLQRLYLSGCSNLRRIPESI-----I-NLSKLELLHLKNCSKLLSLP--ELPCNLFSVGV 492 (720)
Q Consensus 428 -------~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l-----~-~l~~L~~L~L~~~~~l~~lp--~lp~~L~~L~~ 492 (720)
.....+..+..+.+|+.|.+.+|.......... . .+++|..+.+.+|.....+. .+|++|+.|.+
T Consensus 698 ~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l 777 (889)
T KOG4658|consen 698 SLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSL 777 (889)
T ss_pred hhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEE
Confidence 122334456677778888877776543221110 1 13345555555555444433 35677777777
Q ss_pred cCCCccc
Q 004993 493 RRCTSLE 499 (720)
Q Consensus 493 ~~~~~L~ 499 (720)
..|+.++
T Consensus 778 ~~~~~~e 784 (889)
T KOG4658|consen 778 VSCRLLE 784 (889)
T ss_pred ecccccc
Confidence 7765544
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=2.3e-30 Score=270.78 Aligned_cols=209 Identities=30% Similarity=0.426 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHhCCCCC--CccccccchHHHHHhcCCCeEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCChhHHh
Q 004993 3 AHLRQELLSTLLNDDGN--VKIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLI 80 (720)
Q Consensus 3 ~~lq~~ll~~l~~~~~~--~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~ 80 (720)
..++++|+.++...... ...+.......+++.|+++|+||||||||+..+|+.+...++.+..||+||||||++.|+.
T Consensus 64 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~ 143 (287)
T PF00931_consen 64 EQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAG 143 (287)
T ss_dssp HHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGT
T ss_pred ccccccccccccccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccc
Confidence 45778888888877432 2355667899999999999999999999999999999988888888999999999999998
Q ss_pred hcCC-CcEEEcCCCCHHHHHHHHHHhhcCCC-CCChhHHHHHHHHHHHhcCCCchHHHHhhhhcC-CCHHHHHHHHHHHh
Q 004993 81 NCWA-DKIYEVKELADADALKLFSRCAFRQD-HPVACYMELTYKIIKYAQGVPLALKVLGLFLSA-RRKEEWESAITKLE 157 (720)
Q Consensus 81 ~~~~-~~~~~l~~L~~~es~~LF~~~af~~~-~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~-~~~~~W~~~l~~L~ 157 (720)
.++. ...|+|++|+.+||++||.+.++... ......++++++|+++|+|+||||+++|++|+. .+..+|+.+++++.
T Consensus 144 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~ 223 (287)
T PF00931_consen 144 SLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELE 223 (287)
T ss_dssp THHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7655 67999999999999999999998765 344566788999999999999999999999966 36789999998876
Q ss_pred cCC------CchHHHHHHHhhcCCChhhhhhhcccccccCCC--CHHHHHHHHHhCCCCccc
Q 004993 158 TVP------HMEIQDVLKISYDGLDYVEQAMFLDIACYFVGA--NKDFVINYFDASDFFPEI 211 (720)
Q Consensus 158 ~~~------~~~i~~~l~~syd~L~~~~k~~fl~~a~f~~~~--~~~~l~~~w~~~g~~~~~ 211 (720)
... ...+..++.+||+.||++.|.||+|+|+||.+. +++.++++|.++||+...
T Consensus 224 ~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 224 NSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 543 366999999999999999999999999999985 689999999999998653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.8e-25 Score=272.47 Aligned_cols=290 Identities=19% Similarity=0.172 Sum_probs=216.6
Q ss_pred ccCCCcEEECcCcchHHHHHhhccCCcceEEEEeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcc-cccCc
Q 004993 248 INNPGKCRRLWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGE-AFTEL 326 (720)
Q Consensus 248 ~~~~~~~~rL~~~~~~~~~l~~~~~~~~i~~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L 326 (720)
+..|.++.+.|...+.+...........-+...+|++.+......+..|..+++|+.|++++|.+.+..+.... .+++|
T Consensus 41 ~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L 120 (968)
T PLN00113 41 INDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120 (968)
T ss_pred CCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCC
Confidence 34566666677544322222222222222455677777766666678899999999999999988754554433 58999
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEccCCCcc-cccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccc
Q 004993 327 RYLYWDGYPSKSLPPVIRLDTLISLQLRESKVE-QLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSS 404 (720)
Q Consensus 327 ~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~-~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~ 404 (720)
++|++++|.+....+...+++|++|++++|.+. .+|..++++++|++|+|++|.+.+.+|. +.++++|++|++++|.+
T Consensus 121 ~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 121 RYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred CEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence 999999998764333456889999999999987 6788899999999999999988878886 88999999999999998
Q ss_pred cccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCC
Q 004993 405 LVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP 484 (720)
Q Consensus 405 ~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp 484 (720)
.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|+.|++++|...+.+|.
T Consensus 201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-- 278 (968)
T PLN00113 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-- 278 (968)
T ss_pred cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch--
Confidence 888999999999999999999988888999999999999999999988888999999999999999999888777775
Q ss_pred CCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 485 CNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 485 ~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
.+.++++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..++.++.
T Consensus 279 ------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 333 (968)
T PLN00113 279 ------SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333 (968)
T ss_pred ------hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence 3444555555555555555555555555555555555555555555554444433
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.5e-23 Score=255.52 Aligned_cols=265 Identities=20% Similarity=0.222 Sum_probs=178.9
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCC-CCCCCC-CCCCccEEEccCCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSK-SLPPVI-RLDTLISLQLRESK 357 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~-~l~~L~~L~L~~n~ 357 (720)
.++++.+......+..++++++|+.|++++|.+....+..++.+++|++|++++|.+. .+|..+ ++++|++|++++|+
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 4566666555555666777788888888877776656666666777888888777744 456555 67778888888777
Q ss_pred cc-cccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccc
Q 004993 358 VE-QLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS 435 (720)
Q Consensus 358 i~-~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~ 435 (720)
+. .+|..+..+++|++|++++|.+.+.+|. ++++++|+.|++++|.+.+.+|.++..+++|+.|++++|.+.+.+|..
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence 76 5677777778888888887777666665 777778888888877777777777777778888888777777777777
Q ss_pred cCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCC---CCCccEEeccC-------------CCccc
Q 004993 436 LCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL---PCNLFSVGVRR-------------CTSLE 499 (720)
Q Consensus 436 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l---p~~L~~L~~~~-------------~~~L~ 499 (720)
+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|...+.+|.. .++|+.|++++ +++|+
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 777778888888777777777777777778888888777776666641 12333333321 23444
Q ss_pred cccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHHHH
Q 004993 500 ALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQ 544 (720)
Q Consensus 500 ~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 544 (720)
.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+.+++
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 555555555555555555555555555555555555555444443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.9e-23 Score=218.99 Aligned_cols=282 Identities=18% Similarity=0.162 Sum_probs=234.2
Q ss_pred CcCcchHHHHHhhccCCcceEEEEeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCC
Q 004993 257 LWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPS 336 (720)
Q Consensus 257 L~~~~~~~~~l~~~~~~~~i~~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 336 (720)
+-...+....+..+..........|+++.+++..+....|..+.+|..|.|++|.++...+..+..+++|+.|+|..|.+
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 33444555555666666666777888999988888889999999999999999998887777777789999999999988
Q ss_pred CCCCCC-C-CCCCccEEEccCCCcccccCC-CCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccc
Q 004993 337 KSLPPV-I-RLDTLISLQLRESKVEQLWDG-VPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSI 412 (720)
Q Consensus 337 ~~lp~~-~-~l~~L~~L~L~~n~i~~l~~~-~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l 412 (720)
+.+... | ++++|+.|.|..|+|..+.++ |..|.++++|+|+.|++...-.. +-+++.|+.|+|+.|.+...-++++
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 777443 3 789999999999999988755 77899999999999987665554 7789999999999999888888899
Q ss_pred cCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEec
Q 004993 413 QYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGV 492 (720)
Q Consensus 413 ~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~ 492 (720)
...++|+.|+|++|.+...-+..+..|..|++|+|++|.+...--..+..+++|+.|||++|.+...+..- .-.+
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa-----a~~f 388 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA-----AVAF 388 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc-----hhhh
Confidence 99999999999999877777777888999999999998765544556788999999999999877666541 1146
Q ss_pred cCCCccccccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHHH
Q 004993 493 RRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKI 543 (720)
Q Consensus 493 ~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 543 (720)
.++++|+.|.+.+|++..+....+..++.|+.|+|.+|.|..+.|.+|..+
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 789999999999999998888889999999999999999988888888776
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=7.3e-21 Score=199.79 Aligned_cols=259 Identities=19% Similarity=0.152 Sum_probs=179.8
Q ss_pred EEeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCC
Q 004993 279 ILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRES 356 (720)
Q Consensus 279 i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n 356 (720)
-.||++++..-.+....|.++++|+.+.+..|.+.. .|...+...+|+.|+|.+|.+.++.+.. .++.|++|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 358999999888999999999999999998887766 3333344566777777777776665543 5667777777777
Q ss_pred Cccccc-CCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccc-----
Q 004993 357 KVEQLW-DGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNL----- 429 (720)
Q Consensus 357 ~i~~l~-~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~----- 429 (720)
.|.++| ..+..-.++++|+|++|++...-.+ |.++.+|..|.|+.|.++...+.+|.+|++|+.|+|..|++-
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 777666 3455556677777777765443333 666666666666666655555555666666666666655432
Q ss_pred -------------------cccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEE
Q 004993 430 -------------------NRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSV 490 (720)
Q Consensus 430 -------------------~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L 490 (720)
.--...|..+.++++|+|+.|+....--.++.+|+.|+.|+||+|.+...-+.
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-------- 311 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-------- 311 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc--------
Confidence 22222344556666666666655544455666777777777777765554444
Q ss_pred eccCCCccccccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 004993 491 GVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK 546 (720)
Q Consensus 491 ~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~ 546 (720)
.-+.|++|+.|++++|.++...+..+..+..|+.|+|+.|.++.+....|..++++
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence 55678899999999999988888888888899999999999888888777777664
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=7e-21 Score=200.81 Aligned_cols=258 Identities=19% Similarity=0.226 Sum_probs=192.7
Q ss_pred cceEEEEeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEE
Q 004993 274 EAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISL 351 (720)
Q Consensus 274 ~~i~~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L 351 (720)
..++.+.+.-++.+..+++++. -+|..|..|+|+.|++.. .|.....-+++-+|++++|.+.++|... ++..|-.|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~di-F~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchh-cccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 3344444444444455555554 478899999999988766 5555556788889999999999999876 88999999
Q ss_pred EccCCCcccccCCCCCCCCccEEecCCCcCCCC-CCCCcCCcccceeecccccc-cccccccccCCcccceeeccccccc
Q 004993 352 QLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKK-LPDLSQARNLENLLLKACSS-LVETHSSIQYLSKLVTLDMRLCKNL 429 (720)
Q Consensus 352 ~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~-~p~l~~l~~L~~L~L~~~~~-~~~~p~~l~~l~~L~~L~L~~n~~~ 429 (720)
||++|++..+|+.+..|.+|++|+|++|.+... +..+..+++|+.|.+++.+. +..+|.++..|.+|..+|+|.| .+
T Consensus 156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~L 234 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NL 234 (1255)
T ss_pred ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CC
Confidence 999999999999999999999999999876432 22355677888888887543 3468889999999999999966 57
Q ss_pred cccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccc
Q 004993 430 NRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS 509 (720)
Q Consensus 430 ~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~ 509 (720)
..+|+.+.++++|+.|+||+|. ++.+....+...+|++|+||.|+ +..+|. .+..++.|+.|...+|+++
T Consensus 235 p~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~--------avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPD--------AVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchH--------HHhhhHHHHHHHhccCccc
Confidence 7888888899999999999986 44455556667788888888864 556776 5666677777777777765
Q ss_pred c-CCCCCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 510 A-MSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 510 ~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
- -+|+.++.+..|..+..++|.+. +.|..++.+..
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k 340 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK 340 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH
Confidence 3 45677777777777777777653 45666666555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=4.9e-20 Score=194.53 Aligned_cols=218 Identities=23% Similarity=0.262 Sum_probs=104.3
Q ss_pred EEEeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCC----------------------
Q 004993 278 GILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYP---------------------- 335 (720)
Q Consensus 278 ~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~---------------------- 335 (720)
.|.|++|++.+-+++...|.++..|-+|+|++|.+.. .|.....+.+|+.|.+++|+
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 3456666666666666666666666666666555433 23233334555555555554
Q ss_pred ----CCCCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccc
Q 004993 336 ----SKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHS 410 (720)
Q Consensus 336 ----~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~ 410 (720)
+..+|..+ .+.+|..+|++.|++..+|+.+-++++|+.|+||+|+++...-..+...+|++|+++.|++ ..+|.
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL-t~LP~ 285 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL-TVLPD 285 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh-ccchH
Confidence 33344444 4444444444444444444444444455555555444333322233344444555554432 23444
Q ss_pred cccCCcccceeeccccccc-cccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccE
Q 004993 411 SIQYLSKLVTLDMRLCKNL-NRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFS 489 (720)
Q Consensus 411 ~l~~l~~L~~L~L~~n~~~-~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~ 489 (720)
.+..|++|+.|.+.+|++. .-+|+.+++|..|+.+..++| .++..|+.+..+..|+.|.|+.|. +..+|+
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~Nr-LiTLPe------- 356 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNR-LITLPE------- 356 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccc-eeechh-------
Confidence 5555555555555444331 234555555555555554443 344455555555555555554432 223444
Q ss_pred EeccCCCccccccCcccc
Q 004993 490 VGVRRCTSLEALSSFSFL 507 (720)
Q Consensus 490 L~~~~~~~L~~L~l~~N~ 507 (720)
.++-++.|+.|++..|.
T Consensus 357 -aIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 357 -AIHLLPDLKVLDLRENP 373 (1255)
T ss_pred -hhhhcCCcceeeccCCc
Confidence 34444444444444443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=7.2e-17 Score=197.79 Aligned_cols=112 Identities=26% Similarity=0.406 Sum_probs=83.5
Q ss_pred cccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEecc--
Q 004993 416 SKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVR-- 493 (720)
Q Consensus 416 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~-- 493 (720)
++|+.|+|++|.....+|.+++++++|+.|+|++|..++.+|..+ ++++|+.|++++|..+..+|..+.+|+.|.+.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence 467778888887788888888899999999999988888888776 78899999999998888888877777777654
Q ss_pred ----------CCCccccccCcc-cccccCCCCCccccccccccccch
Q 004993 494 ----------RCTSLEALSSFS-FLFSAMSPHNDQYFNLSDCLKLDQ 529 (720)
Q Consensus 494 ----------~~~~L~~L~l~~-N~l~~~~~~~l~~l~~L~~L~L~~ 529 (720)
.+++|+.|++++ |.+.. +|..+..++.|+.+++++
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSD 902 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCC
Confidence 356777777776 34433 444445555555555443
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=2.6e-16 Score=179.76 Aligned_cols=239 Identities=21% Similarity=0.194 Sum_probs=137.0
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCccc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQ 360 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~ 360 (720)
+|++.+....+++. +. ++|+.|.+.+|++..+.. .+++|++|++++|.++.+|.. +++|+.|++++|.++.
T Consensus 206 LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 206 LNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTH 276 (788)
T ss_pred EEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhh
Confidence 45555444433332 21 255666666665554221 145566666666666655542 2344555555554444
Q ss_pred ccCCCC-----------------CCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeec
Q 004993 361 LWDGVP-----------------NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM 423 (720)
Q Consensus 361 l~~~~~-----------------~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 423 (720)
+|.... .+++|+.|+|++|++.. +|.+ ..+|+.|++++|.+. .+|. ...+|+.|+|
T Consensus 277 Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdL 349 (788)
T PRK15387 277 LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLT-SLPT---LPSGLQELSV 349 (788)
T ss_pred hhhchhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC--cccccccccccCccc-cccc---cccccceEec
Confidence 433110 12455566666554332 3321 123445555554432 2332 1135777777
Q ss_pred cccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCC--------
Q 004993 424 RLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC-------- 495 (720)
Q Consensus 424 ~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~-------- 495 (720)
++|.+. .+|.. .++|+.|++++|.+ ..+|.. .++|+.|++++|++ ..+|..|++|+.|+++++
T Consensus 350 S~N~Ls-~LP~l---p~~L~~L~Ls~N~L-~~LP~l---~~~L~~LdLs~N~L-t~LP~l~s~L~~LdLS~N~LssIP~l 420 (788)
T PRK15387 350 SDNQLA-SLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNRL-TSLPVLPSELKELMVSGNRLTSLPML 420 (788)
T ss_pred CCCccC-CCCCC---Ccccceehhhcccc-ccCccc---ccccceEEecCCcc-cCCCCcccCCCEEEccCCcCCCCCcc
Confidence 766533 45532 34566666666543 345543 24677788877754 457777777777776653
Q ss_pred -CccccccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 496 -TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 496 -~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
.+|+.|++++|.++ .+|..+..++.|..++|++|+|++..+..+..+..
T Consensus 421 ~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 421 PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 470 (788)
T ss_pred hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence 35777888999987 46777888999999999999999988888866654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=3.7e-19 Score=179.69 Aligned_cols=238 Identities=22% Similarity=0.220 Sum_probs=152.3
Q ss_pred ecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCCcccccCCCCC
Q 004993 290 HLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESKVEQLWDGVPN 367 (720)
Q Consensus 290 ~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~~ 367 (720)
...|..++.|.+|..|++..|++.... .++.+..|..|+++.|.++.+|... .+.+|.+|||+.|+++++|+++..
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl 273 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL 273 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH
Confidence 334556778888888888888776633 5555777888888888888888766 688888888888888888888888
Q ss_pred CCCccEEecCCCcCCCCCCCCcCCcccceeecccccccc-------------------------------------ccc-
Q 004993 368 LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLV-------------------------------------ETH- 409 (720)
Q Consensus 368 L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~-------------------------------------~~p- 409 (720)
+.+|.+||+|+|.+....+.++++ .|+.|.+.||.+-. ..|
T Consensus 274 LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence 888888888888776666668888 78888887774300 000
Q ss_pred ---ccccCCcccceeec--------------------------cc-----------------------cccccccccccC
Q 004993 410 ---SSIQYLSKLVTLDM--------------------------RL-----------------------CKNLNRLPSSLC 437 (720)
Q Consensus 410 ---~~l~~l~~L~~L~L--------------------------~~-----------------------n~~~~~lp~~l~ 437 (720)
+....+.+.+.|++ +. |+..+.+|..++
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~ 432 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELS 432 (565)
T ss_pred CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHH
Confidence 00111122222222 22 223344455677
Q ss_pred CCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCC-------------ccEE---eccCCCccccc
Q 004993 438 ELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCN-------------LFSV---GVRRCTSLEAL 501 (720)
Q Consensus 438 ~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~-------------L~~L---~~~~~~~L~~L 501 (720)
.+++|..|+|++| .+..+|..++.+..|+.|+++.|+ ...+|..... +..+ .+.++.+|.+|
T Consensus 433 ~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 433 QLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred hhhcceeeecccc-hhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 8889999999875 688899999999999999999873 4455541100 0111 13344455555
Q ss_pred cCcccccccCCCCCccccccccccccchhhHH
Q 004993 502 SSFSFLFSAMSPHNDQYFNLSDCLKLDQNELK 533 (720)
Q Consensus 502 ~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 533 (720)
++.+|.+. .+|..++++++++.|++++|+|.
T Consensus 511 DL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 511 DLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 55555543 23334555555555555555554
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=6.8e-18 Score=170.60 Aligned_cols=233 Identities=21% Similarity=0.223 Sum_probs=148.4
Q ss_pred hhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccE
Q 004993 295 TFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKE 373 (720)
Q Consensus 295 ~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~ 373 (720)
+++++..+..|+.+.|++.. .+...+...+|+.|+.+.|.+..+|+.+ .+..|..|+..+|++..+|+++.++.+|..
T Consensus 86 aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~ 164 (565)
T KOG0472|consen 86 AIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSK 164 (565)
T ss_pred HHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHH
Confidence 34445555555555554443 3333444555555666666655555555 455566666666666666666666666666
Q ss_pred EecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCC
Q 004993 374 IDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNL 453 (720)
Q Consensus 374 L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~ 453 (720)
|++.+|++....|+.-.++.|++|+...| .++.+|+.++.|.+|..|+|..|+ +..+| .|..+..|..|.++.|. .
T Consensus 165 l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~-i 240 (565)
T KOG0472|consen 165 LDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQ-I 240 (565)
T ss_pred hhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccH-H
Confidence 66666655544444333666666666554 455566666666666666666664 44555 46666666666666553 4
Q ss_pred Cccchhcc-CCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhH
Q 004993 454 RRIPESII-NLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNEL 532 (720)
Q Consensus 454 ~~lp~~l~-~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l 532 (720)
+.+|.... ++++|..|||..| .++++|. .+.-+.+|+.|++++|.+++. |..++++ .|+.|.+.+|.+
T Consensus 241 ~~lpae~~~~L~~l~vLDLRdN-klke~Pd--------e~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 241 EMLPAEHLKHLNSLLVLDLRDN-KLKEVPD--------EICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HhhHHHHhcccccceeeecccc-ccccCch--------HHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCch
Confidence 55565544 7888888888886 4567776 666778999999999999865 4567788 889999999999
Q ss_pred HHHHHHHHHHH
Q 004993 533 KGIAEDALQKI 543 (720)
Q Consensus 533 ~~~~~~~~~~l 543 (720)
..+..+.++.-
T Consensus 310 rTiRr~ii~~g 320 (565)
T KOG0472|consen 310 RTIRREIISKG 320 (565)
T ss_pred HHHHHHHHccc
Confidence 87776665543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=6.9e-15 Score=169.26 Aligned_cols=214 Identities=19% Similarity=0.267 Sum_probs=100.3
Q ss_pred CccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCc
Q 004993 301 RLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSR 380 (720)
Q Consensus 301 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~ 380 (720)
+|+.|++++|.+... + ...+++|++|++++|.++.+|..+ ..+|+.|+|++|++..+|..+. .+|+.|++++|+
T Consensus 200 ~L~~L~Ls~N~LtsL-P--~~l~~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 200 QITTLILDNNELKSL-P--ENLQGNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred CCcEEEecCCCCCcC-C--hhhccCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence 455555555544431 1 112345555555555555555433 2345555555555555554432 345555555554
Q ss_pred CCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchh
Q 004993 381 QLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPES 459 (720)
Q Consensus 381 ~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~ 459 (720)
+. .+|. +. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.+ ..+|..
T Consensus 274 L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L-t~LP~~ 343 (754)
T PRK15370 274 IS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENAL-TSLPAS 343 (754)
T ss_pred cC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcc-ccCChh
Confidence 33 2332 21 34555555555332 2332221 24444555544322 233322 23445555554432 224433
Q ss_pred ccCCCCCCEEcccCCcCcCcCCC-CCCCccEEeccCC----------CccccccCcccccccCCCCC----ccccccccc
Q 004993 460 IINLSKLELLHLKNCSKLLSLPE-LPCNLFSVGVRRC----------TSLEALSSFSFLFSAMSPHN----DQYFNLSDC 524 (720)
Q Consensus 460 l~~l~~L~~L~L~~~~~l~~lp~-lp~~L~~L~~~~~----------~~L~~L~l~~N~l~~~~~~~----l~~l~~L~~ 524 (720)
+. ++|+.|++++|++. .+|. +|++|+.|.+.++ .+|+.|++++|.+... |.. ...++.+..
T Consensus 344 l~--~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 344 LP--PELQVLDVSKNQIT-VLPETLPPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRL-PESLPHFRGEGPQPTR 419 (754)
T ss_pred hc--CcccEEECCCCCCC-cCChhhcCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcccC-chhHHHHhhcCCCccE
Confidence 32 34555555554322 2332 3333444443332 2577778888887643 332 233466778
Q ss_pred cccchhhHHH
Q 004993 525 LKLDQNELKG 534 (720)
Q Consensus 525 L~L~~N~l~~ 534 (720)
+++.+|.++.
T Consensus 420 L~L~~Npls~ 429 (754)
T PRK15370 420 IIVEYNPFSE 429 (754)
T ss_pred EEeeCCCccH
Confidence 8888888763
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=7.3e-17 Score=145.25 Aligned_cols=151 Identities=23% Similarity=0.288 Sum_probs=102.7
Q ss_pred ccCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeeccc
Q 004993 323 FTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKA 401 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~ 401 (720)
+.+.+.|.++.|.+..+|+.+ .+.+|+.|++.+|+|+++|..++.+++|+.|+++-|++......|+.+|.|+.|+|..
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 455666777777777777776 6777777777777777777777777777777777776443333477777777777776
Q ss_pred ccccc-cccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCc
Q 004993 402 CSSLV-ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCS 475 (720)
Q Consensus 402 ~~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 475 (720)
|+... .+|..|..|+.|+-|.|++|. ...+|..++++++|+.|.+.+|. +-++|..++.++.|++|.+.+|.
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccce
Confidence 65543 356666677777777777664 45566667777777777777664 34566667777777777777654
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.5e-16 Score=143.25 Aligned_cols=190 Identities=21% Similarity=0.307 Sum_probs=155.5
Q ss_pred CCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCC
Q 004993 336 SKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYL 415 (720)
Q Consensus 336 ~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l 415 (720)
+..+|..+++.+++.|.|++|+++.+|..+..+.+|+.|++++|++....+.++++++|+.|++.-|+ +..+|..|+.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCC
Confidence 55678888999999999999999999999999999999999999866655569999999999998774 56689999999
Q ss_pred cccceeeccccccc-cccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccC
Q 004993 416 SKLVTLDMRLCKNL-NRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRR 494 (720)
Q Consensus 416 ~~L~~L~L~~n~~~-~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~ 494 (720)
+.|+.|||.+|... ..+|..+..++.|+.|+|++|. .+.+|..++++++|+.|.+..|.. -++|. .++.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl-l~lpk--------eig~ 171 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL-LSLPK--------EIGD 171 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch-hhCcH--------HHHH
Confidence 99999999988764 4689888899999999999975 778899999999999999999754 46777 7888
Q ss_pred CCccccccCcccccccCCCCCcccccc---ccccccchhhHHHHHH
Q 004993 495 CTSLEALSSFSFLFSAMSPHNDQYFNL---SDCLKLDQNELKGIAE 537 (720)
Q Consensus 495 ~~~L~~L~l~~N~l~~~~~~~l~~l~~---L~~L~L~~N~l~~~~~ 537 (720)
++.|+.|.+++|.++..+|. ++.+.. -+.+.+.+|.+...+.
T Consensus 172 lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred HHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCChHH
Confidence 89999999999999866553 333322 2345566666544333
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=3.6e-14 Score=163.33 Aligned_cols=202 Identities=21% Similarity=0.224 Sum_probs=144.1
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCC
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYS 379 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n 379 (720)
.+...|+++++.+... +...+++|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|
T Consensus 178 ~~~~~L~L~~~~LtsL---P~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTI---PACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcC---CcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 3567888888776652 22336789999999999999998763 689999999999999997664 58999999999
Q ss_pred cCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccch
Q 004993 380 RQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPE 458 (720)
Q Consensus 380 ~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~ 458 (720)
.+. .+|. +. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+ ..+|..+ .++|+.|++++|.+. .+|.
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~L-t~LP~~l--p~sL~~L~Ls~N~Lt-~LP~ 321 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSI-RTLPAHL--PSGITHLNVQSNSLT-ALPE 321 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcc-ccCcccc--hhhHHHHHhcCCccc-cCCc
Confidence 865 5564 43 58999999988665 5777664 5899999999864 4577654 258999999998754 5676
Q ss_pred hccCCCCCCEEcccCCcCcCcCCC-CCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHH
Q 004993 459 SIINLSKLELLHLKNCSKLLSLPE-LPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 534 (720)
Q Consensus 459 ~l~~l~~L~~L~L~~~~~l~~lp~-lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 534 (720)
.+. ++|+.|++++|.+. .+|. +|++ |+.|++++|.++. +|..+ .+.|+.|+|++|.|+.
T Consensus 322 ~l~--~sL~~L~Ls~N~Lt-~LP~~l~~s-----------L~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 322 TLP--PGLKTLEAGENALT-SLPASLPPE-----------LQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred ccc--ccceeccccCCccc-cCChhhcCc-----------ccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC
Confidence 543 78999999998654 4663 4444 4445555554442 22221 2345555555555544
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=4.4e-16 Score=157.52 Aligned_cols=246 Identities=17% Similarity=0.131 Sum_probs=189.4
Q ss_pred EEEeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecC-CCCCCCCCCC--CCCCccEEEcc
Q 004993 278 GILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDG-YPSKSLPPVI--RLDTLISLQLR 354 (720)
Q Consensus 278 ~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~~~--~l~~L~~L~L~ 354 (720)
...+++..+.+..+++.+|+.+++||.|+|++|.+..+.+..+..+.+|..|-+.+ |.++.+|... ++..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 34677888888899999999999999999999999998898888888888776666 8899999876 89999999999
Q ss_pred CCCccccc-CCCCCCCCccEEecCCCcCCCCCCC--CcCCcccceeeccccccc------------ccccccccCCcccc
Q 004993 355 ESKVEQLW-DGVPNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSL------------VETHSSIQYLSKLV 419 (720)
Q Consensus 355 ~n~i~~l~-~~~~~L~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~------------~~~p~~l~~l~~L~ 419 (720)
-|++.-++ +.+..|++|..|.+..|.+ ..++. |..+.+++.+.+..|... ...|..++......
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 99998665 5688899999999999864 34443 888888888888777522 11222222222222
Q ss_pred eeecc-------------------------ccccccccc-cccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccC
Q 004993 420 TLDMR-------------------------LCKNLNRLP-SSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 473 (720)
Q Consensus 420 ~L~L~-------------------------~n~~~~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 473 (720)
-..+. .|......| ..|.+|++|+.|+|++|.+.+.-+.+|..+..+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 11111 111112222 2367899999999999998888888999999999999999
Q ss_pred CcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhH
Q 004993 474 CSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNEL 532 (720)
Q Consensus 474 ~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l 532 (720)
|++-..-.. .+.++.+|++|++.+|+++...|-.|..+..|..|+|-.|.+
T Consensus 308 N~l~~v~~~--------~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 308 NKLEFVSSG--------MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred chHHHHHHH--------hhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 864322222 577889999999999999999999999999999999988865
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=1.8e-13 Score=156.62 Aligned_cols=207 Identities=18% Similarity=0.118 Sum_probs=122.6
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCC
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYS 379 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n 379 (720)
.+-..|+++++.+.. .|. ...++|+.|++.+|.++.+|.. +++|++|++++|+++.+|.. .++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~Lts-LP~--~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPD--CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCc-CCc--chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 456788999988765 332 3356899999999999999974 68999999999999999854 467888888888
Q ss_pred cCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchh
Q 004993 380 RQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPES 459 (720)
Q Consensus 380 ~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~ 459 (720)
.+. .+|.+ .++|+.|++++|.+. .+|. .+++|+.|++++|.+. .+|.. ..+|+.|++++|.+ +.+|..
T Consensus 273 ~L~-~Lp~l--p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L-~~LP~l 340 (788)
T PRK15387 273 PLT-HLPAL--PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQL-TSLPTL 340 (788)
T ss_pred chh-hhhhc--hhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCCC---cccccccccccCcc-cccccc
Confidence 643 44431 245677777777543 3443 2356777777776543 34431 22445555555442 234421
Q ss_pred ccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCC---------CccccccCcccccccCCCCCccccccccccccchh
Q 004993 460 IINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC---------TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQN 530 (720)
Q Consensus 460 l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~---------~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N 530 (720)
..+|+.|+|++|++ ..+|.+|++|+.|.+.+. .+|+.|++++|.+++. |.. .+.|+.|++++|
T Consensus 341 ---p~~Lq~LdLS~N~L-s~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N 412 (788)
T PRK15387 341 ---PSGLQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL-PVL---PSELKELMVSGN 412 (788)
T ss_pred ---ccccceEecCCCcc-CCCCCCCcccceehhhccccccCcccccccceEEecCCcccCC-CCc---ccCCCEEEccCC
Confidence 13455555555432 244545555544433321 2445555555555432 221 133444455555
Q ss_pred hHHH
Q 004993 531 ELKG 534 (720)
Q Consensus 531 ~l~~ 534 (720)
.|++
T Consensus 413 ~Lss 416 (788)
T PRK15387 413 RLTS 416 (788)
T ss_pred cCCC
Confidence 4443
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=2.4e-15 Score=166.96 Aligned_cols=237 Identities=23% Similarity=0.272 Sum_probs=170.7
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCc
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKV 358 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i 358 (720)
.+|++.+....++ +....+.+|+.++...|.+.. .+.......+|++|....|.+..+|... .++.|++|+|..|++
T Consensus 245 ~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 245 YLDISHNNLSNLP-EWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred eeecchhhhhcch-HHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence 4666666666665 777888888888888877744 4555555778888888888888888877 588888888888888
Q ss_pred ccccCCCC-CCCC-ccEEecCCCcCCCCCCCC--cCCcccceeecccccccccccccccCCcccceeecccccccccccc
Q 004993 359 EQLWDGVP-NLVN-LKEIDLSYSRQLKKLPDL--SQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS 434 (720)
Q Consensus 359 ~~l~~~~~-~L~~-L~~L~Ls~n~~~~~~p~l--~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~ 434 (720)
..+|+.+- .+.. |+.|+.+.|++ ...|.. ..++.|+.|.+.+|.+....-+.+.++++|+.|+|++|+ ++.+|+
T Consensus 323 ~~lp~~~l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpa 400 (1081)
T KOG0618|consen 323 PSLPDNFLAVLNASLNTLNVSSNKL-STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPA 400 (1081)
T ss_pred cccchHHHhhhhHHHHHHhhhhccc-cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCH
Confidence 88876432 2222 56666666653 334432 346778888888888877776778888899999999886 455554
Q ss_pred -ccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCC
Q 004993 435 -SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP 513 (720)
Q Consensus 435 -~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~ 513 (720)
.+.++..|+.|+||||. +..+|..+.+++.|+.|...+|. +..+| .+..++.|+.+|++.|.++...-
T Consensus 401 s~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~-l~~fP---------e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ-LLSFP---------ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred HHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCc-eeech---------hhhhcCcceEEecccchhhhhhh
Confidence 46678888899999974 77788888888888888887764 44566 36677888888888888765433
Q ss_pred CCccccccccccccchhh
Q 004993 514 HNDQYFNLSDCLKLDQNE 531 (720)
Q Consensus 514 ~~l~~l~~L~~L~L~~N~ 531 (720)
..-...++|++|||++|.
T Consensus 470 ~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 470 PEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhCCCcccceeeccCCc
Confidence 222223688888888885
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=6.6e-15 Score=149.11 Aligned_cols=78 Identities=19% Similarity=0.103 Sum_probs=46.5
Q ss_pred ccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHHHHHHH
Q 004993 460 IINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDA 539 (720)
Q Consensus 460 l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 539 (720)
|..|++|+.|+|++|++...-+. .+.+...++.|.+..|++.......|..+..|+.|+|.+|+|+...|..
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~--------aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDG--------AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred HhhcccceEeccCCCccchhhhh--------hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 55666666666666655444444 5556666666666666665555555556666666666666666655555
Q ss_pred HHHHHH
Q 004993 540 LQKIQQ 545 (720)
Q Consensus 540 ~~~l~~ 545 (720)
|..+..
T Consensus 342 F~~~~~ 347 (498)
T KOG4237|consen 342 FQTLFS 347 (498)
T ss_pred ccccce
Confidence 554443
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=5.9e-14 Score=156.01 Aligned_cols=252 Identities=17% Similarity=0.135 Sum_probs=178.9
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCc
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKV 358 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i 358 (720)
.++++.+-.+..+-+...+.-+|++|++++|.+.. .|.....+.+|+.|+++.|.+..+|... ++.+|++|.|.+|.+
T Consensus 25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l 103 (1081)
T KOG0618|consen 25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL 103 (1081)
T ss_pred hhhccccccccCchHHhhheeeeEEeecccccccc-CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh
Confidence 34455554555445555555569999999998766 6666777999999999999999999777 899999999999999
Q ss_pred ccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCC
Q 004993 359 EQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCE 438 (720)
Q Consensus 359 ~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~ 438 (720)
..+|.++..+++|++|+++.|.+...++-+..++.++.+..++|..+..++ ... ++.+++..|.+.+.++..+..
T Consensus 104 ~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg----~~~-ik~~~l~~n~l~~~~~~~i~~ 178 (1081)
T KOG0618|consen 104 QSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLG----QTS-IKKLDLRLNVLGGSFLIDIYN 178 (1081)
T ss_pred hcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhc----ccc-chhhhhhhhhcccchhcchhh
Confidence 999999999999999999999866555558888888999988883333332 222 777777777777777777776
Q ss_pred CCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCC-----------CccccccCcccc
Q 004993 439 LISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC-----------TSLEALSSFSFL 507 (720)
Q Consensus 439 l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~-----------~~L~~L~l~~N~ 507 (720)
++. .|+|++|... . ..+..+++|+.|....|++ ..+.-.-++++.|.+..+ .+|++++++.|+
T Consensus 179 l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~l-s~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 179 LTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQL-SELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN 252 (1081)
T ss_pred hhe--eeecccchhh-h--hhhhhccchhhhhhhhccc-ceEEecCcchheeeeccCcceeeccccccccceeeecchhh
Confidence 666 6888877644 1 2344555555555544432 222222233333333333 467888888888
Q ss_pred cccCCCCCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 508 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 508 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
+++.+ .++..+.++..+++.+|.|+. +|..+...+.
T Consensus 253 l~~lp-~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~ 288 (1081)
T KOG0618|consen 253 LSNLP-EWIGACANLEALNANHNRLVA-LPLRISRITS 288 (1081)
T ss_pred hhcch-HHHHhcccceEecccchhHHh-hHHHHhhhhh
Confidence 87665 888889999999999998854 5555554444
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=5.3e-14 Score=149.39 Aligned_cols=245 Identities=18% Similarity=0.102 Sum_probs=162.9
Q ss_pred hhhCCCCCccEEEeeCCCCcccc----cCCcccccCceEEEecCCCCCCCCC-------CC-CCCCccEEEccCCCccc-
Q 004993 294 STFKKMPRLRFLKFHGENKFKIS----HFEGEAFTELRYLYWDGYPSKSLPP-------VI-RLDTLISLQLRESKVEQ- 360 (720)
Q Consensus 294 ~~f~~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~lp~-------~~-~l~~L~~L~L~~n~i~~- 360 (720)
..|..+++|+.|+++++.+.... .......+.|++|+++++.+...+. .+ .+++|+.|++++|.+..
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 45667778999999998764421 1112236678999998887664222 22 57799999999998863
Q ss_pred ccCCCCCC---CCccEEecCCCcCCCC----CCC-CcCC-cccceeecccccccc----cccccccCCcccceeeccccc
Q 004993 361 LWDGVPNL---VNLKEIDLSYSRQLKK----LPD-LSQA-RNLENLLLKACSSLV----ETHSSIQYLSKLVTLDMRLCK 427 (720)
Q Consensus 361 l~~~~~~L---~~L~~L~Ls~n~~~~~----~p~-l~~l-~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~ 427 (720)
.+..+..+ ++|++|++++|.+... +.. +..+ ++|+.|++++|.+.+ .++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 33333333 4599999999876531 111 4455 889999999998763 234556677889999999987
Q ss_pred ccc----ccccccCCCCCCcEEeccCCCCCC----ccchhccCCCCCCEEcccCCcCcCcCC-CCCCCccEEeccCCCcc
Q 004993 428 NLN----RLPSSLCELISLQRLYLSGCSNLR----RIPESIINLSKLELLHLKNCSKLLSLP-ELPCNLFSVGVRRCTSL 498 (720)
Q Consensus 428 ~~~----~lp~~l~~l~~L~~L~L~~n~~~~----~lp~~l~~l~~L~~L~L~~~~~l~~lp-~lp~~L~~L~~~~~~~L 498 (720)
+.+ .++..+..+++|+.|++++|.+.+ .++..+..+++|++|++++|+....-. .+...+ ..+.+.|
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~----~~~~~~L 252 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL----LSPNISL 252 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH----hccCCCc
Confidence 653 344455567899999999987653 345567788999999999987553111 100000 0134678
Q ss_pred ccccCccccccc----CCCCCccccccccccccchhhHHHHHHHHHHH
Q 004993 499 EALSSFSFLFSA----MSPHNDQYFNLSDCLKLDQNELKGIAEDALQK 542 (720)
Q Consensus 499 ~~L~l~~N~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 542 (720)
+.|++++|.++. .....+..++.|+.+++++|.++......++.
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 888888887752 11223345578999999999998765444443
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=1.1e-13 Score=147.03 Aligned_cols=231 Identities=19% Similarity=0.087 Sum_probs=147.0
Q ss_pred chhhCCCCCccEEEeeCCCCcc------cccCCcccccCceEEEecCCCCCC-CCCCC-CC---CCccEEEccCCCcc--
Q 004993 293 SSTFKKMPRLRFLKFHGENKFK------ISHFEGEAFTELRYLYWDGYPSKS-LPPVI-RL---DTLISLQLRESKVE-- 359 (720)
Q Consensus 293 ~~~f~~l~~L~~L~L~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~-~l---~~L~~L~L~~n~i~-- 359 (720)
+..+...++|+.|+++++.... ........+++|++|++++|.+.. .+..+ .+ ++|++|++++|++.
T Consensus 44 ~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 44 ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR 123 (319)
T ss_pred HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH
Confidence 3445677778888888776542 011122236688888888888653 22222 23 44888888888876
Q ss_pred ---cccCCCCCC-CCccEEecCCCcCCCCC----CC-CcCCcccceeecccccccc----cccccccCCcccceeecccc
Q 004993 360 ---QLWDGVPNL-VNLKEIDLSYSRQLKKL----PD-LSQARNLENLLLKACSSLV----ETHSSIQYLSKLVTLDMRLC 426 (720)
Q Consensus 360 ---~l~~~~~~L-~~L~~L~Ls~n~~~~~~----p~-l~~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n 426 (720)
.+...+..+ ++|+.|++++|.+.... +. +..+++|+.|++++|.+.+ .++..+..+++|+.|++++|
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 233445566 88899999988766321 22 5566788999998887663 23444556678999999988
Q ss_pred cccc----ccccccCCCCCCcEEeccCCCCCCccchhcc-----CCCCCCEEcccCCcCcC----cCCCCCCCccEEecc
Q 004993 427 KNLN----RLPSSLCELISLQRLYLSGCSNLRRIPESII-----NLSKLELLHLKNCSKLL----SLPELPCNLFSVGVR 493 (720)
Q Consensus 427 ~~~~----~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~-----~l~~L~~L~L~~~~~l~----~lp~lp~~L~~L~~~ 493 (720)
.+.+ .++..+..+++|++|++++|.....-+..+. ..+.|++|++++|.... .++. .+.
T Consensus 204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~--------~~~ 275 (319)
T cd00116 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE--------VLA 275 (319)
T ss_pred ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH--------HHh
Confidence 7543 2444566788899999999876542222221 24789999999986541 1222 234
Q ss_pred CCCccccccCcccccccCC----CCCcccc-ccccccccchhh
Q 004993 494 RCTSLEALSSFSFLFSAMS----PHNDQYF-NLSDCLKLDQNE 531 (720)
Q Consensus 494 ~~~~L~~L~l~~N~l~~~~----~~~l~~l-~~L~~L~L~~N~ 531 (720)
.+++|+.+++++|.++... ...+... +.++.+++.+|.
T Consensus 276 ~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 276 EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 4578888888888887542 2222233 456677776664
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=1.9e-11 Score=129.62 Aligned_cols=173 Identities=24% Similarity=0.321 Sum_probs=106.8
Q ss_pred CCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccEEec
Q 004993 298 KMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDL 376 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~L 376 (720)
.+.--...+++.|.+.. .+.+...+-.|..|.+..|.+..+|..+ ++..|++|+|+.|+++.+|..++.|+ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 34444555666665544 4455555666666666666666666665 66667777777777777776666554 666666
Q ss_pred CCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCcc
Q 004993 377 SYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRI 456 (720)
Q Consensus 377 s~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~l 456 (720)
++|++....++++.++.|..|+.+.|.+ ..+|+-++++.+|+.|+++.|. ...+|..++.| .|..||+++| ....+
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~i 226 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYL 226 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeec
Confidence 6666444333466666677777766643 3455666667777777776664 34455555533 4666777654 35566
Q ss_pred chhccCCCCCCEEcccCCcC
Q 004993 457 PESIINLSKLELLHLKNCSK 476 (720)
Q Consensus 457 p~~l~~l~~L~~L~L~~~~~ 476 (720)
|..|.+|+.|++|.|.+|++
T Consensus 227 Pv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred chhhhhhhhheeeeeccCCC
Confidence 76777777777777766643
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=1.6e-11 Score=130.29 Aligned_cols=174 Identities=24% Similarity=0.264 Sum_probs=118.6
Q ss_pred ccCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeeccc
Q 004993 323 FTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKA 401 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~ 401 (720)
+.--...+++.|.+..+|..+ .+..|+.|.|..|.+..+|..++++..|.+|||+.|++....+.+..++ |+.|.+++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 445556677777777777776 5667777777777777777777777777778877776544444455554 67777776
Q ss_pred ccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCC
Q 004993 402 CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP 481 (720)
Q Consensus 402 ~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp 481 (720)
|+ ++.+|..++.+..|..|+.+.|. +..+|..++.+.+|+.|.+..|+ +..+|+.+..|+ |..||++.|+ +..+|
T Consensus 153 Nk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfScNk-is~iP 227 (722)
T KOG0532|consen 153 NK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSCNK-ISYLP 227 (722)
T ss_pred Cc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCc-eeeeecccCc-eeecc
Confidence 53 45567777777777777777663 55666777777777777777765 445666666544 6777777653 44566
Q ss_pred CCCCCccEEeccCCCccccccCccccccc
Q 004993 482 ELPCNLFSVGVRRCTSLEALSSFSFLFSA 510 (720)
Q Consensus 482 ~lp~~L~~L~~~~~~~L~~L~l~~N~l~~ 510 (720)
- .+.++..|++|-|.+|.+..
T Consensus 228 v--------~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 228 V--------DFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred h--------hhhhhhhheeeeeccCCCCC
Confidence 5 66777777777777777643
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.7e-10 Score=119.10 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=52.0
Q ss_pred CcceEEEEeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCc--ccccCceEEEecCCCCCCCCCCC---CCCC
Q 004993 273 TEAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEG--EAFTELRYLYWDGYPSKSLPPVI---RLDT 347 (720)
Q Consensus 273 ~~~i~~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~lp~~~---~l~~ 347 (720)
.++++.|++|-......... +....+++++.|+|++|-+....+... ..+++|+.|+++.|.+...-+.. .+++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34455556655544433332 455667777777777765554332221 12666666666666544332222 3455
Q ss_pred ccEEEccCCCcc--cccCCCCCCCCccEEecCCC
Q 004993 348 LISLQLRESKVE--QLWDGVPNLVNLKEIDLSYS 379 (720)
Q Consensus 348 L~~L~L~~n~i~--~l~~~~~~L~~L~~L~Ls~n 379 (720)
|+.|.|+.|+++ .+-.-...+|+|+.|+|.+|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 555555555554 11111233445555555544
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=7.8e-10 Score=121.15 Aligned_cols=149 Identities=38% Similarity=0.429 Sum_probs=81.2
Q ss_pred ccCceEEEecCCCCCCCCCCCCCC--CccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecc
Q 004993 323 FTELRYLYWDGYPSKSLPPVIRLD--TLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLK 400 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~~~l~--~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~ 400 (720)
++.++.|++.++.+..+|....+. +|+.|++++|++..+|..+..+++|+.|++++|++....+..+.+++|+.|+++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 355666666666666666666432 666666666666666655666666666666666543332223356666666666
Q ss_pred cccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCC
Q 004993 401 ACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC 474 (720)
Q Consensus 401 ~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~ 474 (720)
+|.+ ..+|..+..+..|+.|.+++|. ....+..+.++.++..|.+.+|. ...+|..++.+++|+.|++++|
T Consensus 195 ~N~i-~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 195 GNKI-SDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred CCcc-ccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCce-eeeccchhccccccceeccccc
Confidence 6543 3344444444456666665553 22333344455555555554443 2233444555555555555554
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=2.8e-10 Score=111.76 Aligned_cols=133 Identities=20% Similarity=0.139 Sum_probs=79.5
Q ss_pred CCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEec
Q 004993 368 LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL 447 (720)
Q Consensus 368 L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 447 (720)
.+.|+++|||+|.+...-..+.-+|.++.|+++.|.+... .+++.|++|+.|||++|. +..+..+-.+|.+.++|.|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 4456677777775433222355566777777777655432 236677777777777664 3444444456677777777
Q ss_pred cCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCC
Q 004993 448 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMS 512 (720)
Q Consensus 448 ~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~ 512 (720)
++|. ++.+ ..++.+-+|..||+++|++- .+.+. -.++++|.|+.+.+.+|.+.+.+
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie-~ldeV------~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNLDLSSNQIE-ELDEV------NHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheeccccccchh-hHHHh------cccccccHHHHHhhcCCCccccc
Confidence 7763 3333 34666677777777776532 22210 04666777777777777776543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=7.7e-10 Score=104.69 Aligned_cols=134 Identities=22% Similarity=0.176 Sum_probs=33.4
Q ss_pred CCCCCCCCCCCCCccEEEccCCCcccccCCCC-CCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccc-
Q 004993 335 PSKSLPPVIRLDTLISLQLRESKVEQLWDGVP-NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSI- 412 (720)
Q Consensus 335 ~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~-~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l- 412 (720)
.+...|...++.++++|+|++|.|+.+. .++ .+.+|+.|+|++|.+ ..++.+..+++|+.|++++|.+.. +++.+
T Consensus 8 ~i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~ 84 (175)
T PF14580_consen 8 MIEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNRISS-ISEGLD 84 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S--CHHHH
T ss_pred cccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCCCCc-cccchH
Confidence 3444555555556666777777666653 333 466667777776653 344556666666666666665443 22223
Q ss_pred cCCcccceeeccccccccc-cccccCCCCCCcEEeccCCCCCCcc---chhccCCCCCCEEcc
Q 004993 413 QYLSKLVTLDMRLCKNLNR-LPSSLCELISLQRLYLSGCSNLRRI---PESIINLSKLELLHL 471 (720)
Q Consensus 413 ~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~~~~~l---p~~l~~l~~L~~L~L 471 (720)
..+++|+.|++++|.+... --..+..+++|+.|+|.+|+....- ...+..+|+|+.||-
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 2456666666666543210 0123345556666666665543210 112334555555543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.6e-10 Score=119.27 Aligned_cols=208 Identities=19% Similarity=0.149 Sum_probs=146.4
Q ss_pred CCCCCccEEEeeCCCCcccccC-CcccccCceEEEecCCCCCCCCCCC----CCCCccEEEccCCCcccccCC--CCCCC
Q 004993 297 KKMPRLRFLKFHGENKFKISHF-EGEAFTELRYLYWDGYPSKSLPPVI----RLDTLISLQLRESKVEQLWDG--VPNLV 369 (720)
Q Consensus 297 ~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~~----~l~~L~~L~L~~n~i~~l~~~--~~~L~ 369 (720)
+++.+|+...|.++.......- -...+++++.|+++.|-+...-... .+++|+.|+|+.|.+...+++ -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 5678899999988765432211 1223999999999999876654433 799999999999998866543 23688
Q ss_pred CccEEecCCCcCCCCCC-C-CcCCcccceeecccccccccccccccCCcccceeecccccccccc-ccccCCCCCCcEEe
Q 004993 370 NLKEIDLSYSRQLKKLP-D-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL-PSSLCELISLQRLY 446 (720)
Q Consensus 370 ~L~~L~Ls~n~~~~~~p-~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~ 446 (720)
+|+.|.|+.|.+...-- . +..+|+|+.|+|++|.....-..+...+..|+.|||++|.+...- -.-.+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 99999999998752211 1 567899999999999654444455667889999999998765432 13466899999999
Q ss_pred ccCCCCCC-ccchh-----ccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccC
Q 004993 447 LSGCSNLR-RIPES-----IINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAM 511 (720)
Q Consensus 447 L~~n~~~~-~lp~~-----l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~ 511 (720)
++.|.+.. .+|+. ...+++|++|+++.|+.. ..+.+ . .+..+++|+.|.+..|.++..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl----~--~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSL----N--HLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc-ccccc----c--hhhccchhhhhhccccccccc
Confidence 99887543 23333 456899999999998652 23321 1 344557788888777777654
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=7.9e-10 Score=121.12 Aligned_cols=199 Identities=27% Similarity=0.247 Sum_probs=159.8
Q ss_pred EEEecCCCC-CCCCCCCCCCCccEEEccCCCcccccCCCCCCC-CccEEecCCCcCCCCCCCCcCCcccceeeccccccc
Q 004993 328 YLYWDGYPS-KSLPPVIRLDTLISLQLRESKVEQLWDGVPNLV-NLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSL 405 (720)
Q Consensus 328 ~L~l~~~~~-~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~-~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~ 405 (720)
.|....+.+ ........++.++.|++.+|.++.++.....+. +|+.|++++|.+......+..+++|+.|++++|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l- 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL- 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh-
Confidence 577777776 444444477899999999999999999888885 99999999998544434689999999999999865
Q ss_pred ccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCC
Q 004993 406 VETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPC 485 (720)
Q Consensus 406 ~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~ 485 (720)
..+|...+.++.|+.|++++|. ...+|..+..+..|++|.+++|. ....+..+.++.++..|.+.+|+.. .++.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~--- 249 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLE-DLPE--- 249 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceee-eccc---
Confidence 4566666689999999999885 67777776677789999999985 4456677889999999998887544 3344
Q ss_pred CccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHHHHHHHH
Q 004993 486 NLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDAL 540 (720)
Q Consensus 486 ~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 540 (720)
.+.++++++.|++++|.++...+ +..+.+++.+++++|.++...|...
T Consensus 250 -----~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 -----SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred -----hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 56777889999999999987655 7789999999999998887665543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=1.4e-09 Score=102.91 Aligned_cols=126 Identities=25% Similarity=0.272 Sum_probs=37.8
Q ss_pred CCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCC-CCCCCccEEe
Q 004993 297 KKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGV-PNLVNLKEID 375 (720)
Q Consensus 297 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~-~~L~~L~~L~ 375 (720)
.+..+++.|+|.+|.+..+.... ..+.+|+.|++++|.++.++....+++|++|++++|.|+.+.+++ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccccchh-hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34456677777777776643322 136677777777777777766556777777777777777665444 3567777777
Q ss_pred cCCCcCCCC--CCCCcCCcccceeecccccccccc---cccccCCcccceeec
Q 004993 376 LSYSRQLKK--LPDLSQARNLENLLLKACSSLVET---HSSIQYLSKLVTLDM 423 (720)
Q Consensus 376 Ls~n~~~~~--~p~l~~l~~L~~L~L~~~~~~~~~---p~~l~~l~~L~~L~L 423 (720)
+++|++... +-.++.+++|+.|++.+|.....- ...+..+|+|+.||-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777764321 112455666666666666543321 012334455555543
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=6.1e-10 Score=130.68 Aligned_cols=151 Identities=22% Similarity=0.202 Sum_probs=113.0
Q ss_pred CCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCC--CCCCCCCC--CCCCccEEEccCC-CcccccCCCCCCCCc
Q 004993 297 KKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYP--SKSLPPVI--RLDTLISLQLRES-KVEQLWDGVPNLVNL 371 (720)
Q Consensus 297 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~~~--~l~~L~~L~L~~n-~i~~l~~~~~~L~~L 371 (720)
......|...+.+|.+........ .+.|+.|-+.+|. +..++..+ .++.|++|||++| .+.++|..++.|-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchhhccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 344677888888877654332222 4589999999986 77777754 7999999999976 677999999999999
Q ss_pred cEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccc--cccccccccCCCCCCcEEecc
Q 004993 372 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK--NLNRLPSSLCELISLQRLYLS 448 (720)
Q Consensus 372 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~--~~~~lp~~l~~l~~L~~L~L~ 448 (720)
|+|+|+++.+. .+|. +.++..|.+|++..+.....+|.....|++|++|.+..-. .....-..+.+|.+|+.|...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999999865 5554 9999999999999887777776666779999999986532 122233344566666666654
Q ss_pred CC
Q 004993 449 GC 450 (720)
Q Consensus 449 ~n 450 (720)
..
T Consensus 677 ~~ 678 (889)
T KOG4658|consen 677 IS 678 (889)
T ss_pred cc
Confidence 43
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.78 E-value=1e-08 Score=117.93 Aligned_cols=88 Identities=27% Similarity=0.244 Sum_probs=43.2
Q ss_pred cceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccC
Q 004993 394 LENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 473 (720)
Q Consensus 394 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 473 (720)
++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 34444444444444444444555555555554444444444444455555555555544444554455555555555555
Q ss_pred CcCcCcCC
Q 004993 474 CSKLLSLP 481 (720)
Q Consensus 474 ~~~l~~lp 481 (720)
|++.+.+|
T Consensus 500 N~l~g~iP 507 (623)
T PLN03150 500 NSLSGRVP 507 (623)
T ss_pred CcccccCC
Confidence 44444444
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=3e-08 Score=114.15 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=63.8
Q ss_pred ccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccC
Q 004993 371 LKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG 449 (720)
Q Consensus 371 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 449 (720)
++.|+|++|.+.+.+|. ++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45566666655555554 55666666666666666556666666666666666666666666666666666666666666
Q ss_pred CCCCCccchhccCC-CCCCEEcccCCcCcC
Q 004993 450 CSNLRRIPESIINL-SKLELLHLKNCSKLL 478 (720)
Q Consensus 450 n~~~~~lp~~l~~l-~~L~~L~L~~~~~l~ 478 (720)
|.+.+.+|..+..+ .++..+++.+|..+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 66666666555442 344555555554433
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=7.9e-09 Score=101.74 Aligned_cols=129 Identities=20% Similarity=0.176 Sum_probs=103.9
Q ss_pred ccCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeeccc
Q 004993 323 FTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKA 401 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~ 401 (720)
...|+.|++++|.++.+..+. -++.++.|++++|.|..+.. +..|++|+.||||+|.+......-..+-|.++|.|++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 678999999999999998888 46899999999999998755 8889999999999997554433345677889999999
Q ss_pred ccccccccccccCCcccceeecccccccc-ccccccCCCCCCcEEeccCCCCCC
Q 004993 402 CSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISLQRLYLSGCSNLR 454 (720)
Q Consensus 402 ~~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~~~~ 454 (720)
|.+.. -+.++.|-+|..||+++|++.. .-...+++|+.|++|.|.+|++.+
T Consensus 362 N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 362 NKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 85432 3578888999999999987532 123468999999999999998544
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.53 E-value=3.8e-07 Score=96.70 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=30.7
Q ss_pred ccCceEEEecCCCCCCCCCCCCCCCccEEEccCC-CcccccCCCCCCCCccEEecCCCc
Q 004993 323 FTELRYLYWDGYPSKSLPPVIRLDTLISLQLRES-KVEQLWDGVPNLVNLKEIDLSYSR 380 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n-~i~~l~~~~~~L~~L~~L~Ls~n~ 380 (720)
+.+++.|++++|.++.+|. -+.+|++|.++++ +++.+|+.+. ++|++|++++|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs 105 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCP 105 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcc
Confidence 4667777777777777762 2345666666653 4445554332 355555555553
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=7.1e-08 Score=106.11 Aligned_cols=223 Identities=27% Similarity=0.267 Sum_probs=131.6
Q ss_pred hhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEE
Q 004993 295 TFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEI 374 (720)
Q Consensus 295 ~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L 374 (720)
.+..+++|..|++.+|.+..+... ...+.+|++|++++|.++.+...-.+..|+.|++.+|.|+.+. ++..+++|+.+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred ccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 356677788888888777664432 3347788888888888877777777777888888888877664 34557788888
Q ss_pred ecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCC--CcEEeccCCC
Q 004993 375 DLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELIS--LQRLYLSGCS 451 (720)
Q Consensus 375 ~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~--L~~L~L~~n~ 451 (720)
++++|.+...-+. ...+.+|+.+.+.+|.+.. ...+..+..+..+++..|.+...-+ +..+.. |+.+++++|.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 8888765443332 4677777777777765433 2334444555555666655433221 222333 7788888876
Q ss_pred CCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccC---CCCC-cccccccccccc
Q 004993 452 NLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAM---SPHN-DQYFNLSDCLKL 527 (720)
Q Consensus 452 ~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~---~~~~-l~~l~~L~~L~L 527 (720)
. ...+..+..+.++..|++.+|+... +. .+...+.+..+....|.+... .... ....+.+....+
T Consensus 244 i-~~~~~~~~~~~~l~~l~~~~n~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (414)
T KOG0531|consen 244 I-SRSPEGLENLKNLPVLDLSSNRISN-LE---------GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTL 312 (414)
T ss_pred c-ccccccccccccccccchhhccccc-cc---------cccccchHHHhccCcchhcchhhhhcccccccccccccccc
Confidence 3 3333556677777778877764332 11 122334444444555444311 1111 234455566666
Q ss_pred chhhHHH
Q 004993 528 DQNELKG 534 (720)
Q Consensus 528 ~~N~l~~ 534 (720)
..|.+..
T Consensus 313 ~~~~~~~ 319 (414)
T KOG0531|consen 313 ELNPIRK 319 (414)
T ss_pred ccCcccc
Confidence 6665543
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=3.9e-08 Score=99.33 Aligned_cols=162 Identities=17% Similarity=0.105 Sum_probs=100.6
Q ss_pred CCCCccEEEccCCCcccc--------------cCCCCCCCCccEEecCCCcCCCCCC-----CCcCCcccceeecccccc
Q 004993 344 RLDTLISLQLRESKVEQL--------------WDGVPNLVNLKEIDLSYSRQLKKLP-----DLSQARNLENLLLKACSS 404 (720)
Q Consensus 344 ~l~~L~~L~L~~n~i~~l--------------~~~~~~L~~L~~L~Ls~n~~~~~~p-----~l~~l~~L~~L~L~~~~~ 404 (720)
....|+.|.|.+|.+... ...++.-++|+++....|++-.... .|...+.|+.+.++.|.+
T Consensus 118 s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 118 SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccc
Confidence 355666666666655421 1234556778888888876433221 155667888888887765
Q ss_pred ccc----ccccccCCcccceeeccccccccc----cccccCCCCCCcEEeccCCCCCCc----cchhc-cCCCCCCEEcc
Q 004993 405 LVE----THSSIQYLSKLVTLDMRLCKNLNR----LPSSLCELISLQRLYLSGCSNLRR----IPESI-INLSKLELLHL 471 (720)
Q Consensus 405 ~~~----~p~~l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~~~~~----lp~~l-~~l~~L~~L~L 471 (720)
... +...+..+++|+.|||.+|.+... +...++.+++|+.|++++|.+... +-..+ ...|+|+.|.+
T Consensus 198 ~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l 277 (382)
T KOG1909|consen 198 RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLEL 277 (382)
T ss_pred cCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceecc
Confidence 432 335677888888888888876442 334556677888999988865432 11122 24688899999
Q ss_pred cCCcCcCcCCCCCCCccEEeccCCCccccccCcccccc
Q 004993 472 KNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS 509 (720)
Q Consensus 472 ~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~ 509 (720)
.+|.+...-... + ...+..-+.|+.|+++.|.+.
T Consensus 278 ~gNeIt~da~~~---l-a~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 278 AGNEITRDAALA---L-AACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred CcchhHHHHHHH---H-HHHHhcchhhHHhcCCccccc
Confidence 888765421100 0 001233578888888888883
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=7.1e-08 Score=106.07 Aligned_cols=217 Identities=21% Similarity=0.132 Sum_probs=121.5
Q ss_pred CCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCC-CCCCCCccEEEccCCCcccccCCCCCCCCccEEec
Q 004993 298 KMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPP-VIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDL 376 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~L 376 (720)
.+..++.+.+..|.+.. .......+++|..|++.+|.++.+.. .-.+++|++|++++|.|+.+. ++..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 34455555555555443 11113336777777777777777776 446777777777777777664 3556666777777
Q ss_pred CCCcCCCCCCCCcCCcccceeeccccccccccc-ccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCc
Q 004993 377 SYSRQLKKLPDLSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRR 455 (720)
Q Consensus 377 s~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~ 455 (720)
++|. +..++.+..+++|+.+++++|.+...-+ . ...+.+|+.+.+.+|.+... .++..+..+..+++..|.+...
T Consensus 148 ~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 148 SGNL-ISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred ccCc-chhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence 7775 4455566667777777777776544332 1 45666777777776643222 2223334444445555543322
Q ss_pred cchhccCCCC--CCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHH
Q 004993 456 IPESIINLSK--LELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELK 533 (720)
Q Consensus 456 lp~~l~~l~~--L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 533 (720)
- .+..+.. |+.+++++|+... ++. .+..+..+..+++.+|.+...... .....+..+.+..|.+.
T Consensus 224 ~--~l~~~~~~~L~~l~l~~n~i~~-~~~--------~~~~~~~l~~l~~~~n~~~~~~~~--~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 224 E--GLNELVMLHLRELYLSGNRISR-SPE--------GLENLKNLPVLDLSSNRISNLEGL--ERLPKLSELWLNDNKLA 290 (414)
T ss_pred c--CcccchhHHHHHHhcccCcccc-ccc--------cccccccccccchhhccccccccc--cccchHHHhccCcchhc
Confidence 1 1222333 6777777765432 212 344556677777777666543322 23444445555555443
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.32 E-value=2.7e-06 Score=90.37 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=43.5
Q ss_pred CCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCC-CCCCCCCCCCCCccEEEccCC-CcccccCCCCCCCCccEE
Q 004993 297 KKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYP-SKSLPPVIRLDTLISLQLRES-KVEQLWDGVPNLVNLKEI 374 (720)
Q Consensus 297 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~l~~L~~L~L~~n-~i~~l~~~~~~L~~L~~L 374 (720)
..+++++.|++++|.+.... ..+.+|+.|.+++|. ++.+|..+ +.+|+.|++++| .+..+|. +|+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc------ccceE
Confidence 34577777777777554432 235567777777644 66666544 457777777776 5655553 34555
Q ss_pred ecCCC
Q 004993 375 DLSYS 379 (720)
Q Consensus 375 ~Ls~n 379 (720)
+++.+
T Consensus 118 ~L~~n 122 (426)
T PRK15386 118 EIKGS 122 (426)
T ss_pred EeCCC
Confidence 55433
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=4.3e-08 Score=99.03 Aligned_cols=234 Identities=15% Similarity=0.068 Sum_probs=143.3
Q ss_pred hhCCCCCccEEEeeCCCCcccccCCc----ccccCceEEEecCCCCC----CCCCCC--------CCCCccEEEccCCCc
Q 004993 295 TFKKMPRLRFLKFHGENKFKISHFEG----EAFTELRYLYWDGYPSK----SLPPVI--------RLDTLISLQLRESKV 358 (720)
Q Consensus 295 ~f~~l~~L~~L~L~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~----~lp~~~--------~l~~L~~L~L~~n~i 358 (720)
....+..++.|+|+||.+.....-.. ...++|+.-+|++-..+ .+|... ..++|++|+||.|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 34566777777888776644222111 12456777777764322 233321 456888888888866
Q ss_pred c-----cccCCCCCCCCccEEecCCCcCCCCC--------------CCCcCCcccceeeccccccccc----ccccccCC
Q 004993 359 E-----QLWDGVPNLVNLKEIDLSYSRQLKKL--------------PDLSQARNLENLLLKACSSLVE----THSSIQYL 415 (720)
Q Consensus 359 ~-----~l~~~~~~L~~L~~L~Ls~n~~~~~~--------------p~l~~l~~L~~L~L~~~~~~~~----~p~~l~~l 415 (720)
. .+-.-+..+..|++|.|.+|.+...- .....-++|+++....|+.-.. +...+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 5 12233567888899988888653211 0134567888888887764332 23456667
Q ss_pred cccceeeccccccccc----cccccCCCCCCcEEeccCCCCCC----ccchhccCCCCCCEEcccCCcCcCcCCC-CCCC
Q 004993 416 SKLVTLDMRLCKNLNR----LPSSLCELISLQRLYLSGCSNLR----RIPESIINLSKLELLHLKNCSKLLSLPE-LPCN 486 (720)
Q Consensus 416 ~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~~~~----~lp~~l~~l~~L~~L~L~~~~~l~~lp~-lp~~ 486 (720)
+.|+.+.+..|.+... +-..+..+++|+.|||.+|.+.. .+...+..+++|+.|++++|.....=.. +...
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 7888888887765321 23346678889999998886543 2445567788888888888854321110 0000
Q ss_pred ccEEeccCCCccccccCcccccccCC----CCCccccccccccccchhhH
Q 004993 487 LFSVGVRRCTSLEALSSFSFLFSAMS----PHNDQYFNLSDCLKLDQNEL 532 (720)
Q Consensus 487 L~~L~~~~~~~L~~L~l~~N~l~~~~----~~~l~~l~~L~~L~L~~N~l 532 (720)
+ -...|+|+.|.+.+|.++..- -..+...+.|..|+|++|.+
T Consensus 265 l----~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 L----KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred H----hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 0 112478888998888875321 11223467788899999988
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.2e-06 Score=67.90 Aligned_cols=40 Identities=30% Similarity=0.295 Sum_probs=15.9
Q ss_pred cccCCcccceeeccccccccccccccCCCCCCcEEeccCC
Q 004993 411 SIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC 450 (720)
Q Consensus 411 ~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n 450 (720)
.+..+++|++|++++|.+....|..+..+++|++|++++|
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3344444444444443333333333344444444444443
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.4e-06 Score=67.68 Aligned_cols=60 Identities=30% Similarity=0.336 Sum_probs=46.5
Q ss_pred cccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCc
Q 004993 416 SKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCS 475 (720)
Q Consensus 416 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 475 (720)
++|++|++++|.+....+..+..+++|++|++++|.+...-|..+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467888888886554444677888889999998887766556678888888888888875
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.12 E-value=8.2e-08 Score=105.01 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=13.3
Q ss_pred hhCCCCCccEEEeeCCCCcc
Q 004993 295 TFKKMPRLRFLKFHGENKFK 314 (720)
Q Consensus 295 ~f~~l~~L~~L~L~~~~~~~ 314 (720)
.+..+..||+|.+.++.+..
T Consensus 104 ~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred eeccccceeeEEecCcchhh
Confidence 34566777788777776543
No 47
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.97 E-value=0.00012 Score=89.32 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=126.1
Q ss_pred CCeEEEEEecCCChH---HHHHHHccCCCCCCCcEEEEEeCChhHHh--hc-CCCcEEEcC----CCCHHHHHHHHHHhh
Q 004993 37 RKKVLIVFDDVTDRK---QIEFLIGELDSFASGSLIIITTRDKQVLI--NC-WADKIYEVK----ELADADALKLFSRCA 106 (720)
Q Consensus 37 ~kr~LlVLDDv~~~~---~~~~l~~~~~~~~~gSrIivTTR~~~v~~--~~-~~~~~~~l~----~L~~~es~~LF~~~a 106 (720)
+.+++|||||+.... ..+.+..-......+-++|||||...-.. .. ..+...++. .|+.+|+.++|....
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 678999999996532 12233222233356778999999853211 11 123355666 899999999997654
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCCCHHHHHHHHHHHhcCCCchHHHHHHHh-hcCCChhhhhhhcc
Q 004993 107 FRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLETVPHMEIQDVLKIS-YDGLDYVEQAMFLD 185 (720)
Q Consensus 107 f~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~~~~i~~~l~~s-yd~L~~~~k~~fl~ 185 (720)
... .. .+...++.+.|+|.|+++..++..+...... -......+...+...+.+.+.-. ++.||+..+..++.
T Consensus 200 ~~~--~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~ 273 (903)
T PRK04841 200 SSP--IE---AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLR 273 (903)
T ss_pred CCC--CC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 321 11 2345789999999999999988777653210 01112223222334566654444 88999999999999
Q ss_pred cccccCCCCHHHHHHHHHhCCCCcccchhhhhcccceEEe----CCeEEeeHHHHHHHHHHhh
Q 004993 186 IACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITIS----CNKIRMHDLLQDMGRKIDR 244 (720)
Q Consensus 186 ~a~f~~~~~~~~l~~~w~~~g~~~~~~~~~L~~~~li~~~----~~~~~mHdLl~d~~~~i~~ 244 (720)
.|+++ .++.+-+..+. +..- ....+..|.+.+++... ...++.|++++++.+.-..
T Consensus 274 ~a~~~-~~~~~l~~~l~-~~~~-~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 274 CSVLR-SMNDALIVRVT-GEEN-GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred hcccc-cCCHHHHHHHc-CCCc-HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 99986 55544333332 2111 24458889999986542 2378999999999887653
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=5.8e-06 Score=82.00 Aligned_cols=194 Identities=18% Similarity=0.106 Sum_probs=89.2
Q ss_pred CCCCccEEEeeCCCCcccccCC--cccccCceEEEecCCC----CCCCCCCCCCCCccEEEccCCCcc--cccCCCCCCC
Q 004993 298 KMPRLRFLKFHGENKFKISHFE--GEAFTELRYLYWDGYP----SKSLPPVIRLDTLISLQLRESKVE--QLWDGVPNLV 369 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~----~~~lp~~~~l~~L~~L~L~~n~i~--~l~~~~~~L~ 369 (720)
.++.++.|||.+|.+.+..... ...++.|++|+++.|+ ++++| ....+|++|-|.++.+. .....+..+|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 4556666666666655422211 1126666666666665 33333 24556666666666554 3334455566
Q ss_pred CccEEecCCCcCCCCCC----------C---CcCCcccceeecccccccccccccccCCcccceeecccccccc-ccccc
Q 004993 370 NLKEIDLSYSRQLKKLP----------D---LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSS 435 (720)
Q Consensus 370 ~L~~L~Ls~n~~~~~~p----------~---l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~lp~~ 435 (720)
.++.|.+|.|..-...- . +...+++..+.++-|+... .++++..+-+..|++-. +--..
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-------~Fpnv~sv~v~e~PlK~~s~ek~ 219 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-------IFPNVNSVFVCEGPLKTESSEKG 219 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-------hcccchheeeecCcccchhhccc
Confidence 66666666553211000 0 1111222222222222111 12334444444443211 11112
Q ss_pred cCCCCCCcEEeccCCCCCCcc--chhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccC
Q 004993 436 LCELISLQRLYLSGCSNLRRI--PESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSS 503 (720)
Q Consensus 436 l~~l~~L~~L~L~~n~~~~~l--p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l 503 (720)
...++.+-.|+|+.+++ ++. -..+.+++.|..|.+++++....+.. .-=+.|-+..+++++.|+-
T Consensus 220 se~~p~~~~LnL~~~~i-dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNI-DSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKVQVLNG 286 (418)
T ss_pred CCCCCcchhhhhccccc-ccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEeeccceEEecC
Confidence 33445555666665543 221 13356667777777777666554432 1112345556666666553
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=6e-07 Score=88.82 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=20.4
Q ss_pred CCCCCcEEeccCCCCCC-ccchhccCCCCCCEEcccCCc
Q 004993 438 ELISLQRLYLSGCSNLR-RIPESIINLSKLELLHLKNCS 475 (720)
Q Consensus 438 ~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~~~ 475 (720)
..++|.+|||++|..+. ..-..+.+++.|++|.++.|.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 45566666666654332 222334556666666666664
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=1.5e-06 Score=95.50 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=16.5
Q ss_pred cCCcccccCceEEEecCCCCCCCC
Q 004993 317 HFEGEAFTELRYLYWDGYPSKSLP 340 (720)
Q Consensus 317 ~~~~~~l~~L~~L~l~~~~~~~lp 340 (720)
+..+..+..||+|.+.+|++...-
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~ 125 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK 125 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh
Confidence 344444788888888888876643
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=1e-05 Score=80.32 Aligned_cols=192 Identities=14% Similarity=0.100 Sum_probs=118.9
Q ss_pred EeecCCccceecC--chhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCC--CCCCCCCC-CCCCccEEEcc
Q 004993 280 LLDMSKVNEIHLN--SSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYP--SKSLPPVI-RLDTLISLQLR 354 (720)
Q Consensus 280 ~l~ls~~~~~~~~--~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~~~-~l~~L~~L~L~ 354 (720)
.+|+.++....++ ...+.+||.|++|+++.|.+...+...-....+|+.|-+.++. .+.+.... .++.++.|.++
T Consensus 75 elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS 154 (418)
T KOG2982|consen 75 ELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMS 154 (418)
T ss_pred hhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhc
Confidence 3666666544433 3567899999999999998765332222347899999998876 44444444 78888999998
Q ss_pred CCCccccc---CCCCC-CCCccEEecCCCcCCCCCC--C-CcCCcccceeecccccccccc-cccccCCcccceeecccc
Q 004993 355 ESKVEQLW---DGVPN-LVNLKEIDLSYSRQLKKLP--D-LSQARNLENLLLKACSSLVET-HSSIQYLSKLVTLDMRLC 426 (720)
Q Consensus 355 ~n~i~~l~---~~~~~-L~~L~~L~Ls~n~~~~~~p--~-l~~l~~L~~L~L~~~~~~~~~-p~~l~~l~~L~~L~L~~n 426 (720)
.|++..+- +.+.. -+.+++|....|....... . ..-+||+..+.+..|.+-..- ..+...++.+-.|+|+.+
T Consensus 155 ~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~ 234 (418)
T KOG2982|consen 155 DNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN 234 (418)
T ss_pred cchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc
Confidence 88665432 11221 2345555555553211111 1 123567777777777543321 234556667778888877
Q ss_pred cccc-ccccccCCCCCCcEEeccCCCCCCccch------hccCCCCCCEEcc
Q 004993 427 KNLN-RLPSSLCELISLQRLYLSGCSNLRRIPE------SIINLSKLELLHL 471 (720)
Q Consensus 427 ~~~~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~------~l~~l~~L~~L~L 471 (720)
++-. .--+.+.++++|..|.++++++...+-. .++.|++++.|+=
T Consensus 235 ~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 235 NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 5422 1223567889999999999987665432 2566777777653
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.56 E-value=3e-06 Score=74.69 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=59.7
Q ss_pred ccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecc
Q 004993 323 FTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLK 400 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~ 400 (720)
..+|+..++++|.++.+|..+ .++.+++|+|.+|.|..+|..+..++.|+.|+++.|.+......+..+.+|-.|+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 456677788888888888777 566888888888888888877888888888888888755443335556677777766
Q ss_pred ccc
Q 004993 401 ACS 403 (720)
Q Consensus 401 ~~~ 403 (720)
+|.
T Consensus 132 ~na 134 (177)
T KOG4579|consen 132 ENA 134 (177)
T ss_pred CCc
Confidence 654
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=6e-06 Score=81.90 Aligned_cols=151 Identities=21% Similarity=0.250 Sum_probs=91.4
Q ss_pred ccCceEEEecCCCCCC-CCCCC-CCCCccEEEccCC-Ccccc--cCCCCCCCCccEEecCCCcCCCCCCC--Cc-CCccc
Q 004993 323 FTELRYLYWDGYPSKS-LPPVI-RLDTLISLQLRES-KVEQL--WDGVPNLVNLKEIDLSYSRQLKKLPD--LS-QARNL 394 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~-lp~~~-~l~~L~~L~L~~n-~i~~l--~~~~~~L~~L~~L~Ls~n~~~~~~p~--l~-~l~~L 394 (720)
+.+|+.|.+.++.+.. +-..+ +-.+|+.|+++.+ ++++. .--+.+++.|..|+|++|......-. +. --++|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 5555555555554322 11111 4456667776664 34322 12256778888888888865543321 11 23678
Q ss_pred ceeeccccccc---ccccccccCCcccceeeccccccccc-cccccCCCCCCcEEeccCCCCCCccchh---ccCCCCCC
Q 004993 395 ENLLLKACSSL---VETHSSIQYLSKLVTLDMRLCKNLNR-LPSSLCELISLQRLYLSGCSNLRRIPES---IINLSKLE 467 (720)
Q Consensus 395 ~~L~L~~~~~~---~~~p~~l~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~~~~~lp~~---l~~l~~L~ 467 (720)
..|+++|+... ..+..-...+++|.+|||++|..++. .-..+.+++.|++|.++.|. +.+|.. +...|.|.
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceE
Confidence 88888887421 11222245778899999988765442 22345688899999999886 334543 56778899
Q ss_pred EEcccCCc
Q 004993 468 LLHLKNCS 475 (720)
Q Consensus 468 ~L~L~~~~ 475 (720)
+|++.+|-
T Consensus 367 yLdv~g~v 374 (419)
T KOG2120|consen 367 YLDVFGCV 374 (419)
T ss_pred EEEecccc
Confidence 99998874
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.44 E-value=0.00012 Score=52.31 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=23.6
Q ss_pred CCccEEEccCCCcccccCCCCCCCCccEEecCCCcC
Q 004993 346 DTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQ 381 (720)
Q Consensus 346 ~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~ 381 (720)
++|++|++++|+|+.+|..+.+|++|+.|++++|++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 356777777777777766677777777777777753
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00028 Score=66.66 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=27.9
Q ss_pred cCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCC-CCCCccEEecCCCc
Q 004993 324 TELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVP-NLVNLKEIDLSYSR 380 (720)
Q Consensus 324 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~-~L~~L~~L~Ls~n~ 380 (720)
.+...+++++|.+..++..-.++.|.+|.+.+|+|+.+.+.+. .+++|+.|.|.+|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 3444455555555544444445555555555555555433332 23445555555543
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.37 E-value=6.7e-06 Score=72.51 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=60.1
Q ss_pred ceEEEecCCCCCCCCCCC----CCCCccEEEccCCCcccccCCCCC-CCCccEEecCCCcCCCCCCCCcCCcccceeecc
Q 004993 326 LRYLYWDGYPSKSLPPVI----RLDTLISLQLRESKVEQLWDGVPN-LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLK 400 (720)
Q Consensus 326 L~~L~l~~~~~~~lp~~~----~l~~L~~L~L~~n~i~~l~~~~~~-L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~ 400 (720)
+..++++.|++..++... ....|+..+|++|.++.+|+.+.. .+.++.|+|++|.+...+.++..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 344566666655555433 456667777777777777765543 346777777777643322236667777777777
Q ss_pred cccccccccccccCCcccceeeccccc
Q 004993 401 ACSSLVETHSSIQYLSKLVTLDMRLCK 427 (720)
Q Consensus 401 ~~~~~~~~p~~l~~l~~L~~L~L~~n~ 427 (720)
.|.+.. .|..+..|.+|..|+..+|.
T Consensus 109 ~N~l~~-~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 109 FNPLNA-EPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cCcccc-chHHHHHHHhHHHhcCCCCc
Confidence 665433 34455556666666665543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=4.1e-05 Score=88.30 Aligned_cols=85 Identities=26% Similarity=0.295 Sum_probs=45.3
Q ss_pred CCCCCccEEEeeCCCCcccc-cCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCccccc--CCCCCCCCccE
Q 004993 297 KKMPRLRFLKFHGENKFKIS-HFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLW--DGVPNLVNLKE 373 (720)
Q Consensus 297 ~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~--~~~~~L~~L~~ 373 (720)
..+|.|++|.+.+-.+.... ..-...+++|+.||+++++++.+.....+++|++|.+++-.+..-. ..+.+|++|+.
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 45666666666664332211 0111226666666666666666644446666666666665554321 23455666666
Q ss_pred EecCCCcC
Q 004993 374 IDLSYSRQ 381 (720)
Q Consensus 374 L~Ls~n~~ 381 (720)
||+|..+.
T Consensus 225 LDIS~~~~ 232 (699)
T KOG3665|consen 225 LDISRDKN 232 (699)
T ss_pred eecccccc
Confidence 66665543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.25 E-value=0.00022 Score=50.86 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=29.3
Q ss_pred cCceEEEecCCCCCCCCC-CCCCCCccEEEccCCCccccc
Q 004993 324 TELRYLYWDGYPSKSLPP-VIRLDTLISLQLRESKVEQLW 362 (720)
Q Consensus 324 ~~L~~L~l~~~~~~~lp~-~~~l~~L~~L~L~~n~i~~l~ 362 (720)
++|++|++++|.++.+|. ..++++|++|++++|+++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 467888888888888888 448888888888888887664
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.0005 Score=65.06 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=67.9
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCCccccc--CCCCCCCCccEEe
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESKVEQLW--DGVPNLVNLKEID 375 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~i~~l~--~~~~~L~~L~~L~ 375 (720)
.+...+||++|.+.....++. ++.|.+|.+++|.++.+.+.+ .+++|..|.|.+|+|.++. +.+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~--l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPH--LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCC--ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 456677888887765444443 788888889888888887777 5778999999999888764 3466777777777
Q ss_pred cCCCcCCCCCCC----CcCCcccceeeccc
Q 004993 376 LSYSRQLKKLPD----LSQARNLENLLLKA 401 (720)
Q Consensus 376 Ls~n~~~~~~p~----l~~l~~L~~L~L~~ 401 (720)
+-+|.....--. +..+|+|+.||+++
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 777764332211 33445555555443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.14 E-value=0.00011 Score=84.75 Aligned_cols=102 Identities=21% Similarity=0.234 Sum_probs=59.7
Q ss_pred CCccEEEeeCCCCcc-cccCCccc-ccCceEEEecCCCCCCC--CCCC-CCCCccEEEccCCCcccccCCCCCCCCccEE
Q 004993 300 PRLRFLKFHGENKFK-ISHFEGEA-FTELRYLYWDGYPSKSL--PPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEI 374 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~-~~~~~~~~-l~~L~~L~l~~~~~~~l--p~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L 374 (720)
.+|+.|+++|..... .++...+. +|+|+.|.+.+-.+..- .... ++++|..||+++++++.+ .+++.|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 578888888754332 12223333 78888888777543221 1122 567777777777777766 567777777777
Q ss_pred ecCCCcCCC--CCCCCcCCcccceeecccc
Q 004993 375 DLSYSRQLK--KLPDLSQARNLENLLLKAC 402 (720)
Q Consensus 375 ~Ls~n~~~~--~~p~l~~l~~L~~L~L~~~ 402 (720)
.+.+-.+.. .+-++-++++|+.||+|..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 666543321 1113455666666666653
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.71 E-value=0.00031 Score=69.15 Aligned_cols=183 Identities=18% Similarity=0.164 Sum_probs=95.6
Q ss_pred CCCccEEEccCCCcc-----cccCCCCCCCCccEEecCCCcCCCC------------CCCCcCCcccceeeccccccccc
Q 004993 345 LDTLISLQLRESKVE-----QLWDGVPNLVNLKEIDLSYSRQLKK------------LPDLSQARNLENLLLKACSSLVE 407 (720)
Q Consensus 345 l~~L~~L~L~~n~i~-----~l~~~~~~L~~L~~L~Ls~n~~~~~------------~p~l~~l~~L~~L~L~~~~~~~~ 407 (720)
+..++.++|++|.|. .+...+.+-.+|+..+++.- +++. +|.+.++|.|+..+||+|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 445555666665554 23344555556666665542 1211 12344566666666666665554
Q ss_pred cccc----ccCCcccceeecccccccccccc--------------ccCCCCCCcEEeccCCCCCCccch-----hccCCC
Q 004993 408 THSS----IQYLSKLVTLDMRLCKNLNRLPS--------------SLCELISLQRLYLSGCSNLRRIPE-----SIINLS 464 (720)
Q Consensus 408 ~p~~----l~~l~~L~~L~L~~n~~~~~lp~--------------~l~~l~~L~~L~L~~n~~~~~lp~-----~l~~l~ 464 (720)
.|+. +++-+.|.+|.|++|.. |.+.. -...-|.|++.....|.+ ...|. .+..-.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~~a~~l~sh~ 185 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKELSAALLESHE 185 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHHHHHHHHhhc
Confidence 4432 34455666666665532 22111 112346777777766653 22222 233335
Q ss_pred CCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCC----CCccccccccccccchhhHH
Q 004993 465 KLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP----HNDQYFNLSDCLKLDQNELK 533 (720)
Q Consensus 465 ~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~----~~l~~l~~L~~L~L~~N~l~ 533 (720)
+|+.+.+..|.+- |+-...|-.+.+..|.+|+.|++++|.++-.-. ..+..++.|+.|.+...-++
T Consensus 186 ~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 186 NLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred CceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 7788888776432 332223333456677888888888887653221 11223455666666665554
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.00076 Score=66.53 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=14.4
Q ss_pred CCCccEEecCCCcCC--CCCCCCcCCcccceeecccc
Q 004993 368 LVNLKEIDLSYSRQL--KKLPDLSQARNLENLLLKAC 402 (720)
Q Consensus 368 L~~L~~L~Ls~n~~~--~~~p~l~~l~~L~~L~L~~~ 402 (720)
+++|++|++++|++. ..++.+..+.+|..|++..|
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 345555555544432 12222333444444444444
No 63
>PRK06893 DNA replication initiation factor; Validated
Probab=96.48 E-value=0.005 Score=61.80 Aligned_cols=93 Identities=16% Similarity=0.315 Sum_probs=60.7
Q ss_pred EEEEEecCCCh---HHHHH-HHccCCCC-CCCcEEEEEeCC----------hhHHhhcCCCcEEEcCCCCHHHHHHHHHH
Q 004993 40 VLIVFDDVTDR---KQIEF-LIGELDSF-ASGSLIIITTRD----------KQVLINCWADKIYEVKELADADALKLFSR 104 (720)
Q Consensus 40 ~LlVLDDv~~~---~~~~~-l~~~~~~~-~~gSrIivTTR~----------~~v~~~~~~~~~~~l~~L~~~es~~LF~~ 104 (720)
-+|||||+|.. .+|+. +...++.. ..|++|||||.+ +.+...++...+++++.+++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 48999999863 45653 22222221 346777666554 46777766678999999999999999999
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCchH
Q 004993 105 CAFRQDHPVACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 105 ~af~~~~~~~~~~~l~~~i~~~c~GlPLal 134 (720)
+++...-..+ ++...-+++++.|-.-++
T Consensus 173 ~a~~~~l~l~--~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 173 NAYQRGIELS--DEVANFLLKRLDRDMHTL 200 (229)
T ss_pred HHHHcCCCCC--HHHHHHHHHhccCCHHHH
Confidence 9875432221 344455666666555444
No 64
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.42 E-value=0.11 Score=53.46 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=67.0
Q ss_pred CCCeEEEEEecCCChH--HHHHHHccCC---CCCCCcEEEEEeCChhHHhhcC----------CCcEEEcCCCCHHHHHH
Q 004993 36 TRKKVLIVFDDVTDRK--QIEFLIGELD---SFASGSLIIITTRDKQVLINCW----------ADKIYEVKELADADALK 100 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~~--~~~~l~~~~~---~~~~gSrIivTTR~~~v~~~~~----------~~~~~~l~~L~~~es~~ 100 (720)
.+++++||+||++... .++.+..-.. .....-.|++|.... +..... ....+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 6788999999998753 4666542211 112233445555433 221111 13468899999999999
Q ss_pred HHHHhhcCCCC--CChhHHHHHHHHHHHhcCCCchHHHHhhhh
Q 004993 101 LFSRCAFRQDH--PVACYMELTYKIIKYAQGVPLALKVLGLFL 141 (720)
Q Consensus 101 LF~~~af~~~~--~~~~~~~l~~~i~~~c~GlPLal~~lg~~L 141 (720)
++...+-.... ...--.+..+.|++.++|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 98876532211 111124677899999999999998888765
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.33 E-value=0.001 Score=65.65 Aligned_cols=205 Identities=16% Similarity=0.048 Sum_probs=100.4
Q ss_pred chhhCCCCCccEEEeeCCCCcccccCCccc----ccCceEEEecCCCCCCCCCCC-C--CCCccEEEccCCCcccccCCC
Q 004993 293 SSTFKKMPRLRFLKFHGENKFKISHFEGEA----FTELRYLYWDGYPSKSLPPVI-R--LDTLISLQLRESKVEQLWDGV 365 (720)
Q Consensus 293 ~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~----l~~L~~L~l~~~~~~~lp~~~-~--l~~L~~L~L~~n~i~~l~~~~ 365 (720)
..++-++|+|+..+|++|.+....+.+.+. -+.|.+|.+++|.++.+...- . +.+|- .-...
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la-----------~nKKa 153 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA-----------YNKKA 153 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH-----------HHhhh
Confidence 456677888888888888766544444332 566777777777665443210 0 00000 00112
Q ss_pred CCCCCccEEecCCCcCCCCCCC-----CcCCcccceeeccccccccc-----ccccccCCcccceeeccccccccc----
Q 004993 366 PNLVNLKEIDLSYSRQLKKLPD-----LSQARNLENLLLKACSSLVE-----THSSIQYLSKLVTLDMRLCKNLNR---- 431 (720)
Q Consensus 366 ~~L~~L~~L~Ls~n~~~~~~p~-----l~~l~~L~~L~L~~~~~~~~-----~p~~l~~l~~L~~L~L~~n~~~~~---- 431 (720)
.+-|.|++.....|++..-... +..-.+|+.+.+..|.+-.. ....+..+.+|+.|||.+|.++..
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 2344555555555543221110 22224555555555543221 112344556677777776654322
Q ss_pred cccccCCCCCCcEEeccCCCCCCccch----hc--cCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcc
Q 004993 432 LPSSLCELISLQRLYLSGCSNLRRIPE----SI--INLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFS 505 (720)
Q Consensus 432 lp~~l~~l~~L~~L~L~~n~~~~~lp~----~l--~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~ 505 (720)
+...++..+.|+.|.+.+|-....=.. .+ ...|+|..|-..+|..-+.+-. -.++....=...|-|..|...+
T Consensus 234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~-~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIIL-DISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceee-eechhhhhhcccHHHHHHHHcc
Confidence 222333445577777777754322111 11 1246777777777654432211 0111112234456777777777
Q ss_pred cccc
Q 004993 506 FLFS 509 (720)
Q Consensus 506 N~l~ 509 (720)
|.+.
T Consensus 313 Nr~~ 316 (388)
T COG5238 313 NRIK 316 (388)
T ss_pred Ccch
Confidence 7765
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.002 Score=63.65 Aligned_cols=84 Identities=21% Similarity=0.135 Sum_probs=38.5
Q ss_pred CCcccceeecccc--cccccccccccCCcccceeeccccccc--cccccccCCCCCCcEEeccCCCCCCcc---chhccC
Q 004993 390 QARNLENLLLKAC--SSLVETHSSIQYLSKLVTLDMRLCKNL--NRLPSSLCELISLQRLYLSGCSNLRRI---PESIIN 462 (720)
Q Consensus 390 ~l~~L~~L~L~~~--~~~~~~p~~l~~l~~L~~L~L~~n~~~--~~lp~~l~~l~~L~~L~L~~n~~~~~l---p~~l~~ 462 (720)
.+|+|+.|.++.| ...+.++.....+++|++|++++|++. .+++ .+..+.+|..|++.+|.....- -..+.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 3344444444444 333333333334455555555555432 1221 1334556666777666543310 112344
Q ss_pred CCCCCEEcccCC
Q 004993 463 LSKLELLHLKNC 474 (720)
Q Consensus 463 l~~L~~L~L~~~ 474 (720)
+++|++|+-...
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 566666665443
No 67
>PF05729 NACHT: NACHT domain
Probab=96.09 E-value=0.013 Score=55.15 Aligned_cols=70 Identities=21% Similarity=0.421 Sum_probs=49.5
Q ss_pred CCCeEEEEEecCCChHH---------HHHHHcc-CCC-CCCCcEEEEEeCChhH--H-hhcCCCcEEEcCCCCHHHHHHH
Q 004993 36 TRKKVLIVFDDVTDRKQ---------IEFLIGE-LDS-FASGSLIIITTRDKQV--L-INCWADKIYEVKELADADALKL 101 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~~~---------~~~l~~~-~~~-~~~gSrIivTTR~~~v--~-~~~~~~~~~~l~~L~~~es~~L 101 (720)
+.++++||||++++... +..+... +.. ..++.+||||||.... . ........++++++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 67899999999975432 2222221 121 2578999999999877 3 2334446899999999999998
Q ss_pred HHHh
Q 004993 102 FSRC 105 (720)
Q Consensus 102 F~~~ 105 (720)
+.++
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.00025 Score=70.00 Aligned_cols=78 Identities=24% Similarity=0.246 Sum_probs=38.7
Q ss_pred CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCC--CCCCCcCCcccceeecccccccccccc-----cccCCc
Q 004993 344 RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLK--KLPDLSQARNLENLLLKACSSLVETHS-----SIQYLS 416 (720)
Q Consensus 344 ~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~--~~p~l~~l~~L~~L~L~~~~~~~~~p~-----~l~~l~ 416 (720)
.++.|++|.|+-|+|+.+. .+..+++|+.|.|..|.+.. .+..+.++|+|+.|.|..|.-.+.-+. .+.-|+
T Consensus 39 kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 4455555555555555442 24445555555555554211 111245566666666666655544332 244556
Q ss_pred ccceee
Q 004993 417 KLVTLD 422 (720)
Q Consensus 417 ~L~~L~ 422 (720)
+|+.||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 666655
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.00038 Score=68.83 Aligned_cols=99 Identities=25% Similarity=0.208 Sum_probs=75.0
Q ss_pred CCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCccccc--CCCCCCCCccEEe
Q 004993 298 KMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLW--DGVPNLVNLKEID 375 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~--~~~~~L~~L~~L~ 375 (720)
.+.+.+.|+..||.+.++.... .++.|++|.|+-|.+.++.+...+++|++|.|+.|.|..+. ..+.++++|+.|-
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~--kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICE--KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHH--hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3556777888887765532221 28888889999898888888778899999999999988764 3578899999999
Q ss_pred cCCCcCCCCCCC------CcCCcccceee
Q 004993 376 LSYSRQLKKLPD------LSQARNLENLL 398 (720)
Q Consensus 376 Ls~n~~~~~~p~------l~~l~~L~~L~ 398 (720)
|..|.-.+.-+. +.-+|||+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 988877665542 45678888876
No 70
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.82 E-value=0.27 Score=53.77 Aligned_cols=178 Identities=12% Similarity=0.048 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhCCCCCC-ccccccchHHHHHhcC--CCeEEEEEecCCChH------HHHHHHccCCCCCCCcE--EEEE
Q 004993 4 HLRQELLSTLLNDDGNV-KIIPNIGLNFESKRLT--RKKVLIVFDDVTDRK------QIEFLIGELDSFASGSL--IIIT 72 (720)
Q Consensus 4 ~lq~~ll~~l~~~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~~------~~~~l~~~~~~~~~gSr--IivT 72 (720)
.+..+++.++.+..... ..+.++....+.+.++ ++.++||||+++... .+..+...... ..+++ ||.+
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i 179 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEE
Confidence 35567777776632211 1233455667777775 456899999998743 34454433221 23444 6777
Q ss_pred eCChhHHhhcC-------CCcEEEcCCCCHHHHHHHHHHhh---cCCCCCCh-hHHHHHHHHHHHhcCCCchHHHHhhhh
Q 004993 73 TRDKQVLINCW-------ADKIYEVKELADADALKLFSRCA---FRQDHPVA-CYMELTYKIIKYAQGVPLALKVLGLFL 141 (720)
Q Consensus 73 TR~~~v~~~~~-------~~~~~~l~~L~~~es~~LF~~~a---f~~~~~~~-~~~~l~~~i~~~c~GlPLal~~lg~~L 141 (720)
+.+..+..... ....+.+++++.++..+++..++ |......+ ..+.+++.+....|..+.|+.++-.+.
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 77765544321 12467899999999999988765 32222222 234444444444566788877664322
Q ss_pred --c---C---CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhhhhhcccccc
Q 004993 142 --S---A---RRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACY 189 (720)
Q Consensus 142 --~---~---~~~~~W~~~l~~L~~~~~~~i~~~l~~syd~L~~~~k~~fl~~a~f 189 (720)
+ + .+.+..+.+++.+. .....-.+.+||.++|..+..++-.
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1 1 35677777777662 2334556789999998877766544
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.71 E-value=0.044 Score=49.19 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=37.6
Q ss_pred cCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCCccccc-CCCCC
Q 004993 291 LNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESKVEQLW-DGVPN 367 (720)
Q Consensus 291 ~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~i~~l~-~~~~~ 367 (720)
+...+|.++++|+.+.+.. ....+....+..+++|+.+.+..+ +..++... +..+|+.+.+.. .+..++ ..+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4456777777888877764 344444444444556666666553 55554433 444555555544 333333 22344
Q ss_pred CCCccEEecCC
Q 004993 368 LVNLKEIDLSY 378 (720)
Q Consensus 368 L~~L~~L~Ls~ 378 (720)
+++|+.+++..
T Consensus 80 ~~~l~~i~~~~ 90 (129)
T PF13306_consen 80 CTNLKNIDIPS 90 (129)
T ss_dssp -TTECEEEETT
T ss_pred cccccccccCc
Confidence 55555555543
No 72
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.64 E-value=0.08 Score=55.69 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=87.8
Q ss_pred CcEEEEEeCChhHHhhc--CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcC
Q 004993 66 GSLIIITTRDKQVLINC--WADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSA 143 (720)
Q Consensus 66 gSrIivTTR~~~v~~~~--~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~ 143 (720)
..-|.+|||...+.... ....+++++.++.+|..+++.+.+-...... -.+....|++.|+|.|-.+..++..+
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~--~~~al~~ia~~~~G~pR~~~~ll~~~-- 205 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEI--EPEAALEIARRSRGTPRIANRLLRRV-- 205 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHhCCCcchHHHHHHHH--
Confidence 45566677765543321 1245789999999999999998775322211 13456789999999997765555422
Q ss_pred CCHHHHHHHHH-HHhcCCC---chHHHHHHHhhcCCChhhhhhhc-ccccccCC-CCHHHHHHHHHhCCCCcccchh-hh
Q 004993 144 RRKEEWESAIT-KLETVPH---MEIQDVLKISYDGLDYVEQAMFL-DIACYFVG-ANKDFVINYFDASDFFPEIGLG-RL 216 (720)
Q Consensus 144 ~~~~~W~~~l~-~L~~~~~---~~i~~~l~~syd~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~w~~~g~~~~~~~~-~L 216 (720)
|..+.. .-..... ......+...|.+++.+++..+. .++.+..+ ...+.+...+...-...+.-++ .|
T Consensus 206 -----~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~L 280 (305)
T TIGR00635 206 -----RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYL 280 (305)
T ss_pred -----HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHH
Confidence 211100 0000000 12233356678888888877665 33545433 4556666665444444444466 69
Q ss_pred hcccceEE
Q 004993 217 VDKSLITI 224 (720)
Q Consensus 217 ~~~~li~~ 224 (720)
+++++|..
T Consensus 281 i~~~li~~ 288 (305)
T TIGR00635 281 LQIGFLQR 288 (305)
T ss_pred HHcCCccc
Confidence 99999964
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.18 E-value=0.068 Score=47.95 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=18.8
Q ss_pred CCCccEEEccCCCccccc-CCCCCCCCccEEecCCCcCCCCCCC--CcCCcccceeecc
Q 004993 345 LDTLISLQLRESKVEQLW-DGVPNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLK 400 (720)
Q Consensus 345 l~~L~~L~L~~n~i~~l~-~~~~~L~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~ 400 (720)
..+|+.+.+.. .+..++ ..+..+++|+.+.+..+ ...++. +..+++|+.+.+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 34455555543 344443 23444555555555443 222222 4444445555543
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.15 E-value=0.0032 Score=65.89 Aligned_cols=111 Identities=24% Similarity=0.341 Sum_probs=45.3
Q ss_pred CCCCccEEecCCCcCCCCCCC---CcCCcccceeeccccccccc--ccccccCCcccceeecccccccccc-----cccc
Q 004993 367 NLVNLKEIDLSYSRQLKKLPD---LSQARNLENLLLKACSSLVE--THSSIQYLSKLVTLDMRLCKNLNRL-----PSSL 436 (720)
Q Consensus 367 ~L~~L~~L~Ls~n~~~~~~p~---l~~l~~L~~L~L~~~~~~~~--~p~~l~~l~~L~~L~L~~n~~~~~l-----p~~l 436 (720)
+.++|+.|.++.|+.....-. -.+.+.|+.+++.+|..... +.+--.+.+.|+.|.+++|...... ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 345555555555543222111 12344555555554432221 1111224445555555555433221 1122
Q ss_pred CCCCCCcEEeccCCCCCC-ccchhccCCCCCCEEcccCCcCc
Q 004993 437 CELISLQRLYLSGCSNLR-RIPESIINLSKLELLHLKNCSKL 477 (720)
Q Consensus 437 ~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~~~~l 477 (720)
..+..|+.|.|++|+.+. ..-+.+..+++|+.+++-+|+..
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 234445555555554332 11222344445555555555433
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.13 E-value=0.0012 Score=69.09 Aligned_cols=183 Identities=19% Similarity=0.274 Sum_probs=99.6
Q ss_pred CCCCCccEEEeeCCCCcccccCC--cccccCceEEEecCCC-CCC--CCCCC-CCCCccEEEccCCC---cccccCCCCC
Q 004993 297 KKMPRLRFLKFHGENKFKISHFE--GEAFTELRYLYWDGYP-SKS--LPPVI-RLDTLISLQLRESK---VEQLWDGVPN 367 (720)
Q Consensus 297 ~~l~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~-~~~--lp~~~-~l~~L~~L~L~~n~---i~~l~~~~~~ 367 (720)
..+++|+.|++..|......... ...+++|++|++++|+ +.. +.... +...++.+.+.+|. ++.+-..-..
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 56788888888886544323222 1228888888888887 222 21122 45556666666542 1122111223
Q ss_pred CCCccEEecCCCcCCCCCCC---CcCCcccceeeccccccccccc--ccccCCcccceeecccccccccccc--ccCCCC
Q 004993 368 LVNLKEIDLSYSRQLKKLPD---LSQARNLENLLLKACSSLVETH--SSIQYLSKLVTLDMRLCKNLNRLPS--SLCELI 440 (720)
Q Consensus 368 L~~L~~L~Ls~n~~~~~~p~---l~~l~~L~~L~L~~~~~~~~~p--~~l~~l~~L~~L~L~~n~~~~~lp~--~l~~l~ 440 (720)
..-+..+++.+|..++.... -..+..|+.|+.++|...+..+ .-..+..+|+.|-+++|+..+..-. --.+.+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 44455666666644333221 2245677777777776544321 1224557788888877765332211 012456
Q ss_pred CCcEEeccCCCCCC--ccchhccCCCCCCEEcccCCcCcCc
Q 004993 441 SLQRLYLSGCSNLR--RIPESIINLSKLELLHLKNCSKLLS 479 (720)
Q Consensus 441 ~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~~~~l~~ 479 (720)
.|+.+++.+|.... .+-..-.+++.|+.|.+++|...+.
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 77777777765322 1222233567788888877765544
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.08 E-value=0.032 Score=33.11 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=13.9
Q ss_pred CccEEEccCCCcccccCCCCC
Q 004993 347 TLISLQLRESKVEQLWDGVPN 367 (720)
Q Consensus 347 ~L~~L~L~~n~i~~l~~~~~~ 367 (720)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777765543
No 77
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.83 E-value=0.2 Score=49.97 Aligned_cols=109 Identities=21% Similarity=0.163 Sum_probs=56.5
Q ss_pred cchHHHHHhcC--CCeEEEEEecCCChH-------H-HHHH---HccCCCCCCCcEEEEEeCChhHHhhc--------CC
Q 004993 26 IGLNFESKRLT--RKKVLIVFDDVTDRK-------Q-IEFL---IGELDSFASGSLIIITTRDKQVLINC--------WA 84 (720)
Q Consensus 26 ~~~~~i~~~L~--~kr~LlVLDDv~~~~-------~-~~~l---~~~~~~~~~gSrIivTTR~~~v~~~~--------~~ 84 (720)
.....+.+.++ +++++||+||+.... . ...+ ...... ...-.+|+++....+.... +.
T Consensus 104 ~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~v~~~S~~~~~~~~~~~~~~~~~~ 182 (234)
T PF01637_consen 104 SALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNVSIVITGSSDSLMEEFLDDKSPLFGR 182 (234)
T ss_dssp --HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-TTSTTTT-
T ss_pred HHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCceEEEECCchHHHHHhhcccCccccc
Confidence 33444545553 346999999997655 1 2222 222222 2334455666556555441 12
Q ss_pred CcEEEcCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHH
Q 004993 85 DKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKV 136 (720)
Q Consensus 85 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~ 136 (720)
...+.+++|+.+++++++...+-..... +.-.+...+|...++|.|..|.-
T Consensus 183 ~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 183 FSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp --EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred cceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 2359999999999999998864332111 11233448899999999987753
No 78
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.67 E-value=3.1 Score=44.84 Aligned_cols=178 Identities=16% Similarity=0.078 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhC--CCCCC-ccccccchHHHHHhcC--CCeEEEEEecCCChH-----HHHHHHccCCC-CC--CCcEEE
Q 004993 4 HLRQELLSTLLN--DDGNV-KIIPNIGLNFESKRLT--RKKVLIVFDDVTDRK-----QIEFLIGELDS-FA--SGSLII 70 (720)
Q Consensus 4 ~lq~~ll~~l~~--~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~~-----~~~~l~~~~~~-~~--~gSrIi 70 (720)
.+..+|+.++.+ ..... ..+..+....+.+.+. +++++||||+++... .+..+.....+ .. ..-.+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 355667777752 21111 0122334455666663 568899999998761 13333322111 11 233456
Q ss_pred EEeCChhHHhhcC-------CCcEEEcCCCCHHHHHHHHHHhhc---CCCCCChhHHHHHHHHHHHhcCCCc-hHHHHhh
Q 004993 71 ITTRDKQVLINCW-------ADKIYEVKELADADALKLFSRCAF---RQDHPVACYMELTYKIIKYAQGVPL-ALKVLGL 139 (720)
Q Consensus 71 vTTR~~~v~~~~~-------~~~~~~l~~L~~~es~~LF~~~af---~~~~~~~~~~~l~~~i~~~c~GlPL-al~~lg~ 139 (720)
.+|++........ ....+.+++.+.+|..+++..++- ......++..++...++..+.|.|- |+..+-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6665554322211 124688999999999999988753 2222334444555667777778774 4333322
Q ss_pred hh----c-C---CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhhhhhccccc
Q 004993 140 FL----S-A---RRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLDIAC 188 (720)
Q Consensus 140 ~L----~-~---~~~~~W~~~l~~L~~~~~~~i~~~l~~syd~L~~~~k~~fl~~a~ 188 (720)
+. . + .+.+..+.+.+.+. .....-+..+||.++|..+..++.
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~ 299 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIAN 299 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 1 1 35566666666652 233445667899888877766553
No 79
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.42 E-value=0.21 Score=53.18 Aligned_cols=151 Identities=16% Similarity=0.069 Sum_probs=87.5
Q ss_pred CcEEEEEeCChhHHhhc--CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcC
Q 004993 66 GSLIIITTRDKQVLINC--WADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSA 143 (720)
Q Consensus 66 gSrIivTTR~~~v~~~~--~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~ 143 (720)
.+-|..|||...+.... .....++++.++.+|..+++.+.+-...... -.+....|+++|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~~-- 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRRV-- 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHHH--
Confidence 44566677755443321 1235789999999999999998875433222 23567889999999996554444322
Q ss_pred CCHHHHHHHHHHHhcCCC---chHHHHHHHhhcCCChhhhhhhc-ccccccCC-CCHHHHHHHHHhCCCCcccchh-hhh
Q 004993 144 RRKEEWESAITKLETVPH---MEIQDVLKISYDGLDYVEQAMFL-DIACYFVG-ANKDFVINYFDASDFFPEIGLG-RLV 217 (720)
Q Consensus 144 ~~~~~W~~~l~~L~~~~~---~~i~~~l~~syd~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~w~~~g~~~~~~~~-~L~ 217 (720)
..|...-. -..... ......+...+..|+...+..+. ....|..+ ...+.+...+...-...+.-++ .|+
T Consensus 227 ---~~~a~~~~-~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 227 ---RDFAQVKG-DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLI 302 (328)
T ss_pred ---HHHHHHcC-CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHH
Confidence 12211100 000001 22344556778889888877775 44455444 4556665555433333333344 788
Q ss_pred cccceEE
Q 004993 218 DKSLITI 224 (720)
Q Consensus 218 ~~~li~~ 224 (720)
+.++|..
T Consensus 303 ~~~li~~ 309 (328)
T PRK00080 303 QQGFIQR 309 (328)
T ss_pred HcCCccc
Confidence 8888864
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.23 E-value=0.0076 Score=67.67 Aligned_cols=108 Identities=22% Similarity=0.240 Sum_probs=50.2
Q ss_pred CCCCccEEEeeCCCCccccc--CCcccccCceEEEecCC-C-CCCCC----CCC-CCCCccEEEccCCC-ccccc-CCC-
Q 004993 298 KMPRLRFLKFHGENKFKISH--FEGEAFTELRYLYWDGY-P-SKSLP----PVI-RLDTLISLQLRESK-VEQLW-DGV- 365 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~l~~~-~-~~~lp----~~~-~l~~L~~L~L~~n~-i~~l~-~~~- 365 (720)
.+++|+.|.+.++....... ......++|+.|+++++ . ....+ ... .+++|+.|+++++. ++..- ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46777777777664333211 11222677777777663 1 11111 011 34566666666655 33111 111
Q ss_pred CCCCCccEEecCCCcCCCCCC--C-CcCCcccceeeccccccc
Q 004993 366 PNLVNLKEIDLSYSRQLKKLP--D-LSQARNLENLLLKACSSL 405 (720)
Q Consensus 366 ~~L~~L~~L~Ls~n~~~~~~p--~-l~~l~~L~~L~L~~~~~~ 405 (720)
..+++|+.|.+..|..+.... . ...+++|++|++++|...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 125566666655554211110 1 334555666666655443
No 81
>PF13173 AAA_14: AAA domain
Probab=92.13 E-value=0.29 Score=44.07 Aligned_cols=70 Identities=17% Similarity=0.059 Sum_probs=51.7
Q ss_pred HHHHHhcCCCeEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCChhHHhhcC----C--CcEEEcCCCCHHHH
Q 004993 29 NFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCW----A--DKIYEVKELADADA 98 (720)
Q Consensus 29 ~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~----~--~~~~~l~~L~~~es 98 (720)
+.+.+....++.+|+||+|....+|......+-..++..+||+|+.....+..-. . ...++|.+|+-.|-
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4455555557899999999999888887766655556789999999988875421 1 23689999987763
No 82
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.87 E-value=2.1 Score=46.08 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=64.5
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-++|+||++.. ...+.|...+..-..+..+|++|.+.+ +.... .....+.+.+++.++..++....... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~ 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C
Confidence 45668899999754 446666655554445677777777664 33332 23568999999999999999875411 1
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHHh
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVLG 138 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~lg 138 (720)
.+ ..+ ..++..++|.|+....+.
T Consensus 217 ~~--~~~-~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 217 PD--DPR-AALAALAEGSVGRALRLA 239 (365)
T ss_pred CH--HHH-HHHHHHcCCCHHHHHHHh
Confidence 11 112 678999999999766553
No 83
>COG3899 Predicted ATPase [General function prediction only]
Probab=91.40 E-value=1.1 Score=53.85 Aligned_cols=172 Identities=13% Similarity=0.138 Sum_probs=110.7
Q ss_pred HHHhc-CCCeEEEEEecC-CChHH----HHHHHccCCC-CCCCcE--EEEEeCCh-hHHhhcCC-CcEEEcCCCCHHHHH
Q 004993 31 ESKRL-TRKKVLIVFDDV-TDRKQ----IEFLIGELDS-FASGSL--IIITTRDK-QVLINCWA-DKIYEVKELADADAL 99 (720)
Q Consensus 31 i~~~L-~~kr~LlVLDDv-~~~~~----~~~l~~~~~~-~~~gSr--IivTTR~~-~v~~~~~~-~~~~~l~~L~~~es~ 99 (720)
+.... +.|+..+|+||+ |-... ++.+.....- .-.-.. .+.|.|.. .......+ -..+.+++|+..|.-
T Consensus 146 i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~ 225 (849)
T COG3899 146 IQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTN 225 (849)
T ss_pred HHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHH
Confidence 33344 346999999999 43222 3333322210 000111 23333333 22222222 358999999999999
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCC-------CHHHHHHHHHHHhcCCC-chHHHHHHHh
Q 004993 100 KLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSAR-------RKEEWESAITKLETVPH-MEIQDVLKIS 171 (720)
Q Consensus 100 ~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~-------~~~~W~~~l~~L~~~~~-~~i~~~l~~s 171 (720)
.+........... -.+.+..|+++.+|+|+-+.-+-..+... +...|+.-...+...+. ..+.+.+...
T Consensus 226 ~lV~~~l~~~~~~---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~r 302 (849)
T COG3899 226 QLVAATLGCTKLL---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAAR 302 (849)
T ss_pred HHHHHHhCCcccc---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHH
Confidence 9987765442322 24567889999999999998887777763 44556555554443322 2256678999
Q ss_pred hcCCChhhhhhhcccccccCCCCHHHHHHHHHhC
Q 004993 172 YDGLDYVEQAMFLDIACYFVGANKDFVINYFDAS 205 (720)
Q Consensus 172 yd~L~~~~k~~fl~~a~f~~~~~~~~l~~~w~~~ 205 (720)
.+.||...|...-..||+.+.++.+.|..++...
T Consensus 303 l~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~~ 336 (849)
T COG3899 303 LQKLPGTTREVLKAAACIGNRFDLDTLAALAEDS 336 (849)
T ss_pred HhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhhc
Confidence 9999999999999999999999988877776643
No 84
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=91.13 E-value=2.6 Score=44.41 Aligned_cols=95 Identities=17% Similarity=0.294 Sum_probs=64.1
Q ss_pred CCeEEEEEe-cCCChHHHHHHHccCCCCCCCcEEEEEeCChhHH-hhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 004993 37 RKKVLIVFD-DVTDRKQIEFLIGELDSFASGSLIIITTRDKQVL-INC-WADKIYEVKELADADALKLFSRCAFRQDHPV 113 (720)
Q Consensus 37 ~kr~LlVLD-Dv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~~ 113 (720)
++|+.||=| |..+...++.|...+..-.+++.+|++|.+.+.+ ... +-..+++++.++.++..+...+.. .. ..
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~-~~--~~ 169 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY-ND--IK 169 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-cC--CC
Confidence 345544444 4456777999998888777899999998766433 221 224689999999999877665432 21 11
Q ss_pred hhHHHHHHHHHHHhcCCCchHHHH
Q 004993 114 ACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 114 ~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
.+.+..++.+++|.|..+...
T Consensus 170 ---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 170 ---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred ---HHHHHHHHHHcCCCHHHHHHH
Confidence 233567889999988765443
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.93 E-value=0.12 Score=30.70 Aligned_cols=9 Identities=56% Similarity=0.597 Sum_probs=3.7
Q ss_pred CcEEeccCC
Q 004993 442 LQRLYLSGC 450 (720)
Q Consensus 442 L~~L~L~~n 450 (720)
|++|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444444
No 86
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.46 E-value=2.3 Score=49.40 Aligned_cols=203 Identities=16% Similarity=0.180 Sum_probs=120.9
Q ss_pred hHHHHHhcC--CCeEEEEEecCCChH------HHHHHHccCCCCCCCcEEEEEeCChhHHhh--cC-CCcEEEcC----C
Q 004993 28 LNFESKRLT--RKKVLIVFDDVTDRK------QIEFLIGELDSFASGSLIIITTRDKQVLIN--CW-ADKIYEVK----E 92 (720)
Q Consensus 28 ~~~i~~~L~--~kr~LlVLDDv~~~~------~~~~l~~~~~~~~~gSrIivTTR~~~v~~~--~~-~~~~~~l~----~ 92 (720)
...+...|. .+...+||||-.-.. .++.+.. ...++=..|||||..--+.- +. .+...++. .
T Consensus 117 ~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~---~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lr 193 (894)
T COG2909 117 LSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK---HAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELR 193 (894)
T ss_pred HHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHH---hCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhc
Confidence 333444443 367899999974322 2444443 34578899999999743321 11 12344444 4
Q ss_pred CCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcC-CCHHHHHHHHHHHhcCCCchHHH-HHHH
Q 004993 93 LADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSA-RRKEEWESAITKLETVPHMEIQD-VLKI 170 (720)
Q Consensus 93 L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~-~~~~~W~~~l~~L~~~~~~~i~~-~l~~ 170 (720)
++.+|+-++|...... +-+ +.-.+.+.++..|-+-|+..++=.+++ .+.+.--..+. .. +..+.+ ...-
T Consensus 194 f~~eE~~~fl~~~~~l---~Ld--~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls---G~-~~~l~dYL~ee 264 (894)
T COG2909 194 FDTEEAAAFLNDRGSL---PLD--AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS---GA-ASHLSDYLVEE 264 (894)
T ss_pred CChHHHHHHHHHcCCC---CCC--hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc---ch-HHHHHHHHHHH
Confidence 8889999999765421 111 122467788889999888888777774 33332222222 11 111222 2233
Q ss_pred hhcCCChhhhhhhcccccccCCCCHHHHHHHHHhCCCCcccchhhhhcccceEEe----CCeEEeeHHHHHHHHHHhhh
Q 004993 171 SYDGLDYVEQAMFLDIACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITIS----CNKIRMHDLLQDMGRKIDRE 245 (720)
Q Consensus 171 syd~L~~~~k~~fl~~a~f~~~~~~~~l~~~w~~~g~~~~~~~~~L~~~~li~~~----~~~~~mHdLl~d~~~~i~~~ 245 (720)
-+|.||++.|.-++-+|.+..- -+.++..+.+++--. .-+++|..++++.+. .+.++.|.++.|+-+.-.+.
T Consensus 265 Vld~Lp~~l~~FLl~~svl~~f--~~eL~~~Ltg~~ng~-amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 265 VLDRLPPELRDFLLQTSVLSRF--NDELCNALTGEENGQ-AMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHhcCCHHHHHHHHHHHhHHHh--hHHHHHHHhcCCcHH-HHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 4688999999988888877422 133444444332211 117888999988754 67899999999997765444
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.30 E-value=0.19 Score=27.71 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=3.7
Q ss_pred ccEEEccCCCcc
Q 004993 348 LISLQLRESKVE 359 (720)
Q Consensus 348 L~~L~L~~n~i~ 359 (720)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 334444444433
No 88
>PRK09087 hypothetical protein; Validated
Probab=90.28 E-value=1.4 Score=43.98 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=58.0
Q ss_pred EEEEEecCCC----hHHHHHHHccCCCCCCCcEEEEEeC---------ChhHHhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 004993 40 VLIVFDDVTD----RKQIEFLIGELDSFASGSLIIITTR---------DKQVLINCWADKIYEVKELADADALKLFSRCA 106 (720)
Q Consensus 40 ~LlVLDDv~~----~~~~~~l~~~~~~~~~gSrIivTTR---------~~~v~~~~~~~~~~~l~~L~~~es~~LF~~~a 106 (720)
-+|++||+.. .+.+-.+..... ..|..||+|++ .+.+...+....+++++++++++-.+++.+++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 3788899953 333444443332 34667898886 34555555666799999999999999998887
Q ss_pred cCCC-CCChhHHHHHHHHHHHhcCCCchHH
Q 004993 107 FRQD-HPVACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 107 f~~~-~~~~~~~~l~~~i~~~c~GlPLal~ 135 (720)
-... ..+ +++..-+++++.|-.-++.
T Consensus 167 ~~~~~~l~---~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 167 ADRQLYVD---PHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHcCCCCC---HHHHHHHHHHhhhhHHHHH
Confidence 4321 222 3445556666665555543
No 89
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.80 E-value=0.047 Score=61.20 Aligned_cols=39 Identities=33% Similarity=0.439 Sum_probs=17.6
Q ss_pred CCCCcEEeccCCCCCC--ccchhccCCCCCCEEcccCCcCc
Q 004993 439 LISLQRLYLSGCSNLR--RIPESIINLSKLELLHLKNCSKL 477 (720)
Q Consensus 439 l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~~~~l 477 (720)
+++|+.|.+.+|.... .+-.....+++|++|+|++|...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 4455555555554211 11222334555555555555443
No 90
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.76 E-value=0.85 Score=45.41 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=55.6
Q ss_pred EEEEEecCCChH---HH-HHHHccCCC-CCCCcEEEEEeCCh---------hHHhhcCCCcEEEcCCCCHHHHHHHHHHh
Q 004993 40 VLIVFDDVTDRK---QI-EFLIGELDS-FASGSLIIITTRDK---------QVLINCWADKIYEVKELADADALKLFSRC 105 (720)
Q Consensus 40 ~LlVLDDv~~~~---~~-~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~es~~LF~~~ 105 (720)
-+|||||++... .| +.+...+.. ...+.+||+||+.. .+...+.....+++++++.+|-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 389999997543 22 333332221 12345789988753 22323333467899999999989888765
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCchHHHH
Q 004993 106 AFRQDHPVACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 106 af~~~~~~~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
+-+..-.. -.+....+++++.|.|..+..+
T Consensus 172 ~~~~~~~~--~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 172 AARRGLQL--PDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred HHHcCCCC--CHHHHHHHHHhccCCHHHHHHH
Confidence 42211111 1234455666777777766444
No 91
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.60 E-value=0.21 Score=27.51 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=8.1
Q ss_pred CceEEEecCCCCCCCC
Q 004993 325 ELRYLYWDGYPSKSLP 340 (720)
Q Consensus 325 ~L~~L~l~~~~~~~lp 340 (720)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5667777777766655
No 92
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.08 E-value=0.016 Score=56.09 Aligned_cols=91 Identities=12% Similarity=0.037 Sum_probs=69.4
Q ss_pred chhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCcccccCCCCCCCCc
Q 004993 293 SSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNL 371 (720)
Q Consensus 293 ~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L 371 (720)
...+..+...+.||++.|.... ..-.+..++.|..|+++.|.+..+|..+ .+..++.+++..|+.+..|.+.+.++++
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 3445566778888888876654 3334445778888888888888888888 6778888888888888888888888888
Q ss_pred cEEecCCCcCCCC
Q 004993 372 KEIDLSYSRQLKK 384 (720)
Q Consensus 372 ~~L~Ls~n~~~~~ 384 (720)
+++++..+.+...
T Consensus 114 k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 114 KKNEQKKTEFFRK 126 (326)
T ss_pred chhhhccCcchHH
Confidence 8888888765433
No 93
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.73 E-value=2.2 Score=41.13 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+.+-+||+||++.. .+++.|...+....+...+|++|++. .+.... ....++++++++.++..+...+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 45668999999754 45777777766656677788777654 333322 12458999999999988888776 1 1
Q ss_pred ChhHHHHHHHHHHHhcCCCch
Q 004993 113 VACYMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLa 133 (720)
. .+.+..+++.++|.|..
T Consensus 170 ~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred C---HHHHHHHHHHcCCCccc
Confidence 1 35578899999998864
No 94
>PRK08727 hypothetical protein; Validated
Probab=87.65 E-value=1.4 Score=44.21 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=54.8
Q ss_pred eEEEEEecCCCh---HHHHH-HHccCCC-CCCCcEEEEEeCC---------hhHHhhcCCCcEEEcCCCCHHHHHHHHHH
Q 004993 39 KVLIVFDDVTDR---KQIEF-LIGELDS-FASGSLIIITTRD---------KQVLINCWADKIYEVKELADADALKLFSR 104 (720)
Q Consensus 39 r~LlVLDDv~~~---~~~~~-l~~~~~~-~~~gSrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~es~~LF~~ 104 (720)
--+|||||+... .+|+. +..-+.. ..+|..||+|++. +.+........++++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 358999999743 23432 2211111 1346679999974 33333333456899999999999999998
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCch
Q 004993 105 CAFRQDHPVACYMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 105 ~af~~~~~~~~~~~l~~~i~~~c~GlPLa 133 (720)
+|....-..+ ++...-+++++.|-.-+
T Consensus 174 ~a~~~~l~l~--~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 174 RAQRRGLALD--EAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHcCCCCC--HHHHHHHHHhCCCCHHH
Confidence 7754321111 33445566666544333
No 95
>PRK13342 recombination factor protein RarA; Reviewed
Probab=87.04 E-value=2.6 Score=46.40 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=62.0
Q ss_pred CCCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEE--eCChh--HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcC
Q 004993 36 TRKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIIT--TRDKQ--VLINC-WADKIYEVKELADADALKLFSRCAFR 108 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivT--TR~~~--v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~ 108 (720)
.+++.+|++|+++.. .+.+.|...+. .|..++|. |.+.. +.... .-..++.+++++.++..+++.+.+-.
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 357889999999854 56666665544 35555553 44332 11111 12368999999999999999876532
Q ss_pred CCCCC-hhHHHHHHHHHHHhcCCCchHHHH
Q 004993 109 QDHPV-ACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 109 ~~~~~-~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
..... .--.+....++++|+|.+..+..+
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 11111 112455677899999988776444
No 96
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.86 E-value=0.036 Score=53.79 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=50.7
Q ss_pred CCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcE
Q 004993 365 VPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 444 (720)
Q Consensus 365 ~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~ 444 (720)
+.....-+.||++.|++...-..|+-++.|..|+++.|. ...+|..++.+..++.+++..| .....|.+++.++.++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 445566666777766654444446666666666666553 3445566666666666665543 35556666666666666
Q ss_pred EeccCCCC
Q 004993 445 LYLSGCSN 452 (720)
Q Consensus 445 L~L~~n~~ 452 (720)
+++.++.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 66666543
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=85.35 E-value=9.8 Score=40.73 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=64.3
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-+||+|+++.. ...+.+...+........+|++|.+.+ +.+.. .....++.++++.++..+.....+-+....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45558889998654 456777666655556777777775554 33322 223578999999999888887766433222
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
.+ .+....+++.++|.|..+...
T Consensus 196 i~--~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 196 IE--DEALELIARAADGSLRDALSL 218 (355)
T ss_pred CC--HHHHHHHHHHcCCChHHHHHH
Confidence 22 355677888999988765433
No 98
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.31 E-value=3.9 Score=45.95 Aligned_cols=97 Identities=15% Similarity=0.211 Sum_probs=65.4
Q ss_pred CCCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEE-EeCChhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIII-TTRDKQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIiv-TTR~~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
.+++-++|+|+++. ..+|+.|...+....+..++|. ||+.+.+..... ....+++++++.+|..+.+.+.+-....
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35677899999986 4568888877765556667654 555556655432 2458999999999999999887754332
Q ss_pred CChhHHHHHHHHHHHhcCCCchH
Q 004993 112 PVACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~GlPLal 134 (720)
..+ .+....|+..++|-+--+
T Consensus 206 ~ie--~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 206 KTD--IEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCC--HHHHHHHHHHcCCCHHHH
Confidence 111 234466888888866443
No 99
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.14 E-value=0.025 Score=62.81 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=16.5
Q ss_pred ccEEEeeCCCCcccccCCc----ccccCceEEEecCCCCC
Q 004993 302 LRFLKFHGENKFKISHFEG----EAFTELRYLYWDGYPSK 337 (720)
Q Consensus 302 L~~L~L~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~ 337 (720)
+..|.|.+|.+........ .....|..|++++|.++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5556666655443211111 11445555555555544
No 100
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.64 E-value=10 Score=42.72 Aligned_cols=96 Identities=10% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCC-hhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRD-KQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-+||+|+++.. ..++.|...+........+|++|.. +.+.... .....|++++++.++..+.+.+.+-+....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45668899999854 4588887777655556666666644 4443332 224689999999999999998877543322
Q ss_pred ChhHHHHHHHHHHHhcCCCchH
Q 004993 113 VACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal 134 (720)
. -.+....|++.++|.+--+
T Consensus 195 i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 A--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred C--CHHHHHHHHHHcCCCHHHH
Confidence 1 1345677888899877544
No 101
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.52 E-value=0.25 Score=47.29 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=37.5
Q ss_pred cceEEEEeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCc--ccccCceEEEecCCC
Q 004993 274 EAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEG--EAFTELRYLYWDGYP 335 (720)
Q Consensus 274 ~~i~~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~ 335 (720)
..+....+|-+........-+.+.+++.++.|.+.+|...+..-... +..++|+.|++++|+
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 34444556666666666666677888888888888886554332221 124555555555554
No 102
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.47 E-value=0.014 Score=64.78 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=15.5
Q ss_pred chhhCCCCCccEEEeeCCCCc
Q 004993 293 SSTFKKMPRLRFLKFHGENKF 313 (720)
Q Consensus 293 ~~~f~~l~~L~~L~L~~~~~~ 313 (720)
..++..++.|..|++++|.+.
T Consensus 108 ~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 108 AQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhcccccHhHhhcccCCCc
Confidence 455677788888888887765
No 103
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=83.32 E-value=3 Score=48.24 Aligned_cols=112 Identities=17% Similarity=0.075 Sum_probs=71.6
Q ss_pred chHHHHHhcCCCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEE--EeCChhHHh-hc-CCCcEEEcCCCCHHHHHH
Q 004993 27 GLNFESKRLTRKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIII--TTRDKQVLI-NC-WADKIYEVKELADADALK 100 (720)
Q Consensus 27 ~~~~i~~~L~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIiv--TTR~~~v~~-~~-~~~~~~~l~~L~~~es~~ 100 (720)
.+..+.+.++++++.++-|+.|.. ..|+.++..+....+...|+| ||++..... .. .-...+.+++++.+|.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 467788888999999998877754 348888877776666666666 677554211 11 112367889999999999
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhh
Q 004993 101 LFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLF 140 (720)
Q Consensus 101 LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~ 140 (720)
++.+.+-+...... .++...|.+++..-+-|+..++..
T Consensus 361 Il~~~a~~~~v~ls--~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINVHLA--AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 99986643211111 344455666655445555555433
No 104
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=83.08 E-value=6.2 Score=42.21 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=63.0
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEe-CChhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITT-RDKQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-++|+|+++.. ...+.|...+.....+..+|++| +-..+..... -...+.+++++.++..+..........
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--
Confidence 46668999999854 44666665554434455555555 4444443332 246899999999999999987432211
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHHh
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVLG 138 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~lg 138 (720)
. -.+....++..++|.|.....+.
T Consensus 218 ~--~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 218 S--DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 13345788999999998765543
No 105
>PRK06620 hypothetical protein; Validated
Probab=82.80 E-value=5.7 Score=39.27 Aligned_cols=67 Identities=9% Similarity=0.094 Sum_probs=42.5
Q ss_pred eEEEEEecCCChHH--HHHHHccCCCCCCCcEEEEEeCChh-------HHhhcCCCcEEEcCCCCHHHHHHHHHHhhc
Q 004993 39 KVLIVFDDVTDRKQ--IEFLIGELDSFASGSLIIITTRDKQ-------VLINCWADKIYEVKELADADALKLFSRCAF 107 (720)
Q Consensus 39 r~LlVLDDv~~~~~--~~~l~~~~~~~~~gSrIivTTR~~~-------v~~~~~~~~~~~l~~L~~~es~~LF~~~af 107 (720)
.-+|++|||....+ +-.+...+. ..|..||+|++... +...+...-+++++.+++++-.++..+.+-
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 35788999974332 223322222 35668999887432 333334455899999999997777776654
No 106
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.70 E-value=16 Score=39.40 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=63.9
Q ss_pred CCeEEEEEecCCChH--HHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDRK--QIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~~--~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-++|+|+++... .++.+...+.......++|++|.+. .+.+.. +-...+++++++.++..+.....+-.....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 455689999998654 4777777766656677777777554 343332 224689999999999888877655432211
Q ss_pred ChhHHHHHHHHHHHhcCCCchH
Q 004993 113 VACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal 134 (720)
.+ .+....|++.++|.|-.+
T Consensus 198 i~--~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 198 TD--EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred CC--HHHHHHHHHHcCCCHHHH
Confidence 11 244567888899977644
No 107
>COG3903 Predicted ATPase [General function prediction only]
Probab=82.44 E-value=0.8 Score=48.74 Aligned_cols=194 Identities=21% Similarity=0.216 Sum_probs=127.6
Q ss_pred chHHHHHhcCCCeEEEEEecCCChHH-HHHHHccCCCCCCCcEEEEEeCChhHHhhcCCCcEEEcCCCCHH-HHHHHHHH
Q 004993 27 GLNFESKRLTRKKVLIVFDDVTDRKQ-IEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVKELADA-DALKLFSR 104 (720)
Q Consensus 27 ~~~~i~~~L~~kr~LlVLDDv~~~~~-~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~~L~~~-es~~LF~~ 104 (720)
....+..+..++|.++|+||-.+... =-.+...+..+...-+|+.|+|+.-. +..+.++.++.|+.- ++-++|..
T Consensus 77 ~~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ 153 (414)
T COG3903 77 AVDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVC 153 (414)
T ss_pred HHHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHH
Confidence 45578888999999999999876532 11222222223445568888887544 345678888888876 79999987
Q ss_pred hhcCCCC---CChhHHHHHHHHHHHhcCCCchHHHHhhhhcCCCHHHHHHHHHH----Hhc------CCCchHHHHHHHh
Q 004993 105 CAFRQDH---PVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITK----LET------VPHMEIQDVLKIS 171 (720)
Q Consensus 105 ~af~~~~---~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~----L~~------~~~~~i~~~l~~s 171 (720)
.|-...- -...-......|..+..|.||||...++..+.....+--..++. +.. ...+.....+..|
T Consensus 154 ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 154 RAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhh
Confidence 7632110 11223445678899999999999999988888665554443332 221 1234567788999
Q ss_pred hcCCChhhhhhhcccccccCCCCHHHHHHHHHhCCCCc--cc-----chhhhhcccceEEe
Q 004993 172 YDGLDYVEQAMFLDIACYFVGANKDFVINYFDASDFFP--EI-----GLGRLVDKSLITIS 225 (720)
Q Consensus 172 yd~L~~~~k~~fl~~a~f~~~~~~~~l~~~w~~~g~~~--~~-----~~~~L~~~~li~~~ 225 (720)
|--|..-++--|--++.|..+|..+ ...|.+.|-.. +. .+..+++++++...
T Consensus 234 ~~lLtgwe~~~~~rLa~~~g~f~~~--l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 234 YALLTGWERALFGRLAVFVGGFDLG--LALAVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred hHhhhhHHHHHhcchhhhhhhhccc--HHHHHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 9999998999999999998887665 23333333221 22 25667888887654
No 108
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.04 E-value=0.29 Score=46.84 Aligned_cols=64 Identities=28% Similarity=0.414 Sum_probs=29.8
Q ss_pred ccccCCcccceeecccccccccc-ccccC-CCCCCcEEeccCCCCCCcc-chhccCCCCCCEEcccC
Q 004993 410 SSIQYLSKLVTLDMRLCKNLNRL-PSSLC-ELISLQRLYLSGCSNLRRI-PESIINLSKLELLHLKN 473 (720)
Q Consensus 410 ~~l~~l~~L~~L~L~~n~~~~~l-p~~l~-~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~L~~ 473 (720)
..+..+++++.|.+.+|...... -+.++ -.++|+.|+|++|...+.- -..+..+++|+.|.|.+
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 33444455555555544432210 00011 2356666666666544322 23355566666666554
No 109
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.42 E-value=0.99 Score=27.78 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=11.7
Q ss_pred CCccEEEccCCCcccccCC
Q 004993 346 DTLISLQLRESKVEQLWDG 364 (720)
Q Consensus 346 ~~L~~L~L~~n~i~~l~~~ 364 (720)
++|++|+|++|+|+.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 110
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.42 E-value=0.99 Score=27.78 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=11.7
Q ss_pred CCccEEEccCCCcccccCC
Q 004993 346 DTLISLQLRESKVEQLWDG 364 (720)
Q Consensus 346 ~~L~~L~L~~n~i~~l~~~ 364 (720)
++|++|+|++|+|+.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 111
>PRK08084 DNA replication initiation factor; Provisional
Probab=80.41 E-value=5.4 Score=40.07 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=54.1
Q ss_pred EEEEEecCCCh---HHHHHH----HccCCCCCCC-cEEEEEeCCh---------hHHhhcCCCcEEEcCCCCHHHHHHHH
Q 004993 40 VLIVFDDVTDR---KQIEFL----IGELDSFASG-SLIIITTRDK---------QVLINCWADKIYEVKELADADALKLF 102 (720)
Q Consensus 40 ~LlVLDDv~~~---~~~~~l----~~~~~~~~~g-SrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~es~~LF 102 (720)
-+|++|||... .+|+.- ..... ..| -+||+||+.. .+...+....+++++++++++-.++.
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~--e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRIL--ESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHH--HcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 37889999653 345432 22221 133 3689998743 44445555679999999999999998
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhcCCCch
Q 004993 103 SRCAFRQDHPVACYMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 103 ~~~af~~~~~~~~~~~l~~~i~~~c~GlPLa 133 (720)
.++|-...-.. -+++..-+++++.|-.-+
T Consensus 177 ~~~a~~~~~~l--~~~v~~~L~~~~~~d~r~ 205 (235)
T PRK08084 177 QLRARLRGFEL--PEDVGRFLLKRLDREMRT 205 (235)
T ss_pred HHHHHHcCCCC--CHHHHHHHHHhhcCCHHH
Confidence 77664321111 134455566666554443
No 112
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=79.84 E-value=4.1 Score=43.93 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=56.6
Q ss_pred CCeEEEEEecCCCh-------------H---HHHHHHccCCCC--CCCcEEEEEeCChh-----HHhhcCCCcEEEcCCC
Q 004993 37 RKKVLIVFDDVTDR-------------K---QIEFLIGELDSF--ASGSLIIITTRDKQ-----VLINCWADKIYEVKEL 93 (720)
Q Consensus 37 ~kr~LlVLDDv~~~-------------~---~~~~l~~~~~~~--~~gSrIivTTR~~~-----v~~~~~~~~~~~l~~L 93 (720)
....+|+|||++.. + .+..+...++.. ..+.+||.||.... +......+..++++..
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 35679999999753 1 233333333222 34678888888543 3322233678999999
Q ss_pred CHHHHHHHHHHhhcCCCCCC-hhHHHHHHHHHHHhcCCC
Q 004993 94 ADADALKLFSRCAFRQDHPV-ACYMELTYKIIKYAQGVP 131 (720)
Q Consensus 94 ~~~es~~LF~~~af~~~~~~-~~~~~l~~~i~~~c~GlP 131 (720)
+.++..++|..++.+..... .++. .+++.+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~~~~~~----~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAEDVDLE----AIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCccCCHH----HHHHHcCCCC
Confidence 99999999998886543222 2343 4555666654
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=79.77 E-value=6.7 Score=39.34 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=52.2
Q ss_pred EEEEecCCCh---HHHHH-HHccCCC-CCCCcEEEEEeCChhH---------HhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 004993 41 LIVFDDVTDR---KQIEF-LIGELDS-FASGSLIIITTRDKQV---------LINCWADKIYEVKELADADALKLFSRCA 106 (720)
Q Consensus 41 LlVLDDv~~~---~~~~~-l~~~~~~-~~~gSrIivTTR~~~v---------~~~~~~~~~~~l~~L~~~es~~LF~~~a 106 (720)
+||+||+... .+|+. +..-++. ...|-+||+||+...- ...++...+++++++++++-.++..+++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6789999632 34543 3322221 1346778888875322 1122234689999999999999988776
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCch
Q 004993 107 FRQDHPVACYMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 107 f~~~~~~~~~~~l~~~i~~~c~GlPLa 133 (720)
....-..+ +++..-+++++.|-.-+
T Consensus 180 ~~~~~~l~--~ev~~~L~~~~~~d~r~ 204 (234)
T PRK05642 180 SRRGLHLT--DEVGHFILTRGTRSMSA 204 (234)
T ss_pred HHcCCCCC--HHHHHHHHHhcCCCHHH
Confidence 54321111 34455566666554433
No 114
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=79.75 E-value=22 Score=41.66 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=64.2
Q ss_pred CCeEEEEEecCCChH--HHHHHHccCCCCCCCcEEEEEeCChhHH-hhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDRK--QIEFLIGELDSFASGSLIIITTRDKQVL-INC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~~--~~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
++.-++|||+++... .|+.|...+.......++|+||++.+-. ... +-...+.++.++.++..+.+.+.+-...-.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 344578899998654 4888877666556678888888776433 222 224689999999999998887765332211
Q ss_pred ChhHHHHHHHHHHHhcCCC-chHHH
Q 004993 113 VACYMELTYKIIKYAQGVP-LALKV 136 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlP-Lal~~ 136 (720)
. -.+..+.|++.++|-. -|+..
T Consensus 198 i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 198 F--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1344567888888754 34433
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.84 E-value=12 Score=42.93 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=67.1
Q ss_pred CCCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCC-hhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRD-KQVLINC-WADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
.+++-+||+|+++.. ..++.|...+........+|++|.+ ..+.... .....++++.++.++..+.+...+.+...
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 356678999999754 5567777666544455666666655 4444332 22357899999999999888876654322
Q ss_pred CChhHHHHHHHHHHHhcCC-CchHHHHhhhh
Q 004993 112 PVACYMELTYKIIKYAQGV-PLALKVLGLFL 141 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~Gl-PLal~~lg~~L 141 (720)
..+ .+....|++.++|- --|+..+...+
T Consensus 197 ~id--~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 DYD--PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCC--HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111 34567788888884 46776665443
No 116
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=76.23 E-value=10 Score=40.15 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=57.4
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+.+-+||+||+... ...+.+...+.......++|+||... .+.+.. .....+++++++.++..+.+.+.+-+....
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~ 203 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD 203 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 34458999999754 33444544443444567788887543 232222 123578899999999888887765432211
Q ss_pred ChhHHHHHHHHHHHhcCCCchH
Q 004993 113 VACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal 134 (720)
. -.+....++++++|.+-.+
T Consensus 204 ~--~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 204 Y--DDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred C--CHHHHHHHHHHcCCCHHHH
Confidence 1 1345566778887765544
No 117
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=75.99 E-value=14 Score=37.97 Aligned_cols=129 Identities=17% Similarity=0.253 Sum_probs=80.4
Q ss_pred EEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChhHHhhc--CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCChhH
Q 004993 41 LIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQVLINC--WADKIYEVKELADADALKLFSRCAFRQDHPVACY 116 (720)
Q Consensus 41 LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~--~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~ 116 (720)
.+|||+.+.. +.|.++......+...+|-|.+|..-...-.- .-...|..+.|.+++..+-....|-+.....+
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-- 209 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID-- 209 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--
Confidence 5678999875 45999998888888888887777665543321 12347899999999998888887765443332
Q ss_pred HHHHHHHHHHhcC-CCchHHHHhhhhc-CCCHHHHHHHHHHHh-cCCCchHHHHHHHhh
Q 004993 117 MELTYKIIKYAQG-VPLALKVLGLFLS-ARRKEEWESAITKLE-TVPHMEIQDVLKISY 172 (720)
Q Consensus 117 ~~l~~~i~~~c~G-lPLal~~lg~~L~-~~~~~~W~~~l~~L~-~~~~~~i~~~l~~sy 172 (720)
.+.-+.|+++++| |--|+.++-++-. ++.+.. ..+.+.+. ..|+..+.++|.+.+
T Consensus 210 ~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~-~~~~e~~~GvVp~~~l~~lle~a~ 267 (346)
T KOG0989|consen 210 DDALKLIAKISDGDLRRAITTLQSLSLLGKRITT-SLVNEELAGVVPDEKLLDLLELAL 267 (346)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhhccCcccch-HHHHHHHhccCCHHHHHHHHHHHH
Confidence 3455789999988 5556665543322 232210 11222233 344555555555544
No 118
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=73.07 E-value=2.5 Score=25.93 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=16.2
Q ss_pred ccCceEEEecCCCCCCCCCC
Q 004993 323 FTELRYLYWDGYPSKSLPPV 342 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~ 342 (720)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788888999988888865
No 119
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=73.07 E-value=2.5 Score=25.93 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=16.2
Q ss_pred ccCceEEEecCCCCCCCCCC
Q 004993 323 FTELRYLYWDGYPSKSLPPV 342 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~ 342 (720)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788888999988888865
No 120
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=72.38 E-value=18 Score=39.44 Aligned_cols=94 Identities=11% Similarity=0.093 Sum_probs=62.2
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-++++|+++.. ...+.|...+....++..+|++|.+. .+.... +-...+.++.++.++..+.+.... + .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~ 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---V 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---C
Confidence 34447788999754 44566666555545667777776664 444342 225689999999999998887432 1 1
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
. .+.+..++..++|-|.....+
T Consensus 192 ~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 344677899999999765444
No 121
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=71.87 E-value=27 Score=38.88 Aligned_cols=97 Identities=11% Similarity=0.145 Sum_probs=58.8
Q ss_pred eEEEEEecCCCh---HHH-HHHHccCCC-CCCCcEEEEEeCCh---------hHHhhcCCCcEEEcCCCCHHHHHHHHHH
Q 004993 39 KVLIVFDDVTDR---KQI-EFLIGELDS-FASGSLIIITTRDK---------QVLINCWADKIYEVKELADADALKLFSR 104 (720)
Q Consensus 39 r~LlVLDDv~~~---~~~-~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~es~~LF~~ 104 (720)
.-+|||||+... ..+ +.+..-+.. ...|..||+|+... .+...+...-+..+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 448899999543 222 222222211 13455788886532 3333334456889999999999999998
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCchHH
Q 004993 105 CAFRQDHPVACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 105 ~af~~~~~~~~~~~l~~~i~~~c~GlPLal~ 135 (720)
++-...-...--++...-|++.++|.|-.+.
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~ 317 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIK 317 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHH
Confidence 8743221011124566778888998887764
No 122
>PLN03025 replication factor C subunit; Provisional
Probab=71.67 E-value=20 Score=37.88 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-+++||+++.. .+-+.|..........+++|+||... .+.+.. .-..+++++++++++..+...+.+-+....
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 35668999999854 33444444444445678888877543 222211 113578999999999988887766432221
Q ss_pred ChhHHHHHHHHHHHhcCCCch
Q 004993 113 VACYMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLa 133 (720)
.+ .+....+++.++|-.-.
T Consensus 178 i~--~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 178 YV--PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CC--HHHHHHHHHHcCCCHHH
Confidence 11 33456788888876543
No 123
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.66 E-value=11 Score=43.47 Aligned_cols=100 Identities=10% Similarity=0.091 Sum_probs=65.1
Q ss_pred CCCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEE-eCChhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIIT-TRDKQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivT-TR~~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
.+++-++|+|+|+.. ..++.|...+..-..+.++|.+ |....+..... -...|.++.++.++..+.+.+.+-....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 345568899999854 4588888777655556665554 44455544432 2468999999999998888766533221
Q ss_pred CChhHHHHHHHHHHHhcCCCchHHHH
Q 004993 112 PVACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
.. -.+..+.|++.++|.|.....+
T Consensus 202 ~~--d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 202 AH--EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 11 1234577899999988755443
No 124
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=70.93 E-value=18 Score=38.37 Aligned_cols=93 Identities=13% Similarity=0.229 Sum_probs=61.7
Q ss_pred CeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 004993 38 KKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDHPV 113 (720)
Q Consensus 38 kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~~ 113 (720)
.|+. |+|+++. ....+.+...+..-..+..+|.||.+. .+.... +-...+.+.+++.+++.+...... .. . .
T Consensus 107 ~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~-~-~ 182 (328)
T PRK05707 107 RKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE-S-D 182 (328)
T ss_pred CeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc-C-C
Confidence 4554 6799985 445667666665545677787777775 444443 225689999999999998887653 11 1 1
Q ss_pred hhHHHHHHHHHHHhcCCCchHHHH
Q 004993 114 ACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 114 ~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
.+-+..++..++|-|+....+
T Consensus 183 ---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 223456788999999866555
No 125
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=70.49 E-value=37 Score=35.78 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=69.4
Q ss_pred CeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 004993 38 KKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDK-QVLINCW-ADKIYEVKELADADALKLFSRCAFRQDHPV 113 (720)
Q Consensus 38 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~~ 113 (720)
++=.+|+|+++.. ...+.|...+..-.+++.+|.+|.+. .++.... -...+.++.++.+++.+...... .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------~ 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------I 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------C
Confidence 3446778998754 45777777766656677777776654 5665543 35689999999999998886531 1
Q ss_pred hhHHHHHHHHHHHhcCCCchHHHHhhhhcCCCHHHHHHHHHHH
Q 004993 114 ACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKL 156 (720)
Q Consensus 114 ~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L 156 (720)
+ .+..++..++|.|+.+..+. .....++.+..+..+
T Consensus 182 ~----~~~~~l~l~~G~p~~A~~~~---~~~~~~~~~~~~~~l 217 (319)
T PRK06090 182 T----VPAYALKLNMGSPLKTLAMM---KEGGLEKYHKLERQL 217 (319)
T ss_pred c----hHHHHHHHcCCCHHHHHHHh---CCCcHHHHHHHHHHH
Confidence 1 13467899999999776553 233344444444443
No 126
>PF14516 AAA_35: AAA-like domain
Probab=70.23 E-value=49 Score=35.13 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=42.2
Q ss_pred CcEEEcCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCC
Q 004993 85 DKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSAR 144 (720)
Q Consensus 85 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~ 144 (720)
...+++++++.+|..+|..++-..-. ....+++.+.++|.|--+..++..+...
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~~~------~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLEFS------QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhccCC------HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 34789999999999999987743311 1127889999999999999998888763
No 127
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=70.10 E-value=15 Score=43.69 Aligned_cols=171 Identities=11% Similarity=0.008 Sum_probs=86.2
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHHhcC---CCeEEEEEecCCChH--HHHHHHccCCCC-CCCcEEEE--EeCChh
Q 004993 6 RQELLSTLLNDDGNVKIIPNIGLNFESKRLT---RKKVLIVFDDVTDRK--QIEFLIGELDSF-ASGSLIII--TTRDKQ 77 (720)
Q Consensus 6 q~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~---~kr~LlVLDDv~~~~--~~~~l~~~~~~~-~~gSrIiv--TTR~~~ 77 (720)
-+.|..+|.+...............+.+.+. +...+||||+|+... +=+.|..-+.|. ..+++|+| +|.+-+
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 3445555544432221222334445555542 234589999998542 111122122221 35677665 343222
Q ss_pred --------HHhhcCCCcEEEcCCCCHHHHHHHHHHhhcCC-CC-CChhHHHHHHHHHHHhcCCCchHHHHhhhhcC----
Q 004993 78 --------VLINCWADKIYEVKELADADALKLFSRCAFRQ-DH-PVACYMELTYKIIKYAQGVPLALKVLGLFLSA---- 143 (720)
Q Consensus 78 --------v~~~~~~~~~~~l~~L~~~es~~LF~~~af~~-~~-~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~---- 143 (720)
|...++ ...+..++.+.++-.+++..+|-.. .. ..+..+-+|+.++...|-.-.||.++-.+...
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegs 992 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQ 992 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCC
Confidence 222222 2235669999999999999887532 11 22334455565555556677777766555432
Q ss_pred -CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhhhhhc
Q 004993 144 -RRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFL 184 (720)
Q Consensus 144 -~~~~~W~~~l~~L~~~~~~~i~~~l~~syd~L~~~~k~~fl 184 (720)
...+.-+.+.+++... .+.-....||.++|-.++
T Consensus 993 kVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLl 1027 (1164)
T PTZ00112 993 KIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLT 1027 (1164)
T ss_pred ccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHH
Confidence 1334444444443322 122234578877775544
No 128
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=69.50 E-value=15 Score=39.41 Aligned_cols=97 Identities=20% Similarity=0.387 Sum_probs=60.3
Q ss_pred hcCCCeEEEEEecCC--ChHHHHHHHccCCCCCCCcEEEE--EeCChhHHh---hcCCCcEEEcCCCCHHHHHHHHHHhh
Q 004993 34 RLTRKKVLIVFDDVT--DRKQIEFLIGELDSFASGSLIII--TTRDKQVLI---NCWADKIYEVKELADADALKLFSRCA 106 (720)
Q Consensus 34 ~L~~kr~LlVLDDv~--~~~~~~~l~~~~~~~~~gSrIiv--TTR~~~v~~---~~~~~~~~~l~~L~~~es~~LF~~~a 106 (720)
+..++|.+|.+|.|. +..|=+.+... -.+|.-|+| ||.+..-.- -.+-..+|++++|+.+|-.++..+-+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 345789999999996 45555555543 347877777 666653311 11235799999999999999998843
Q ss_pred cCCCCCCh----h-HHHHHHHHHHHhcCCCch
Q 004993 107 FRQDHPVA----C-YMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 107 f~~~~~~~----~-~~~l~~~i~~~c~GlPLa 133 (720)
-.....-. . -++.-..+++.++|---+
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 22111111 1 133455677777775443
No 129
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=69.44 E-value=11 Score=37.38 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=44.0
Q ss_pred HHHHHhcCCCeEEEEEecCCCh---HHHHH----HHccCCCCCCCcEEEEEeCCh---------hHHhhcCCCcEEEcCC
Q 004993 29 NFESKRLTRKKVLIVFDDVTDR---KQIEF----LIGELDSFASGSLIIITTRDK---------QVLINCWADKIYEVKE 92 (720)
Q Consensus 29 ~~i~~~L~~kr~LlVLDDv~~~---~~~~~----l~~~~~~~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~ 92 (720)
..+++.+++ -=+|++|||+.. ..|+. +...+. ..|-+||+|++.. .+.......-++++++
T Consensus 89 ~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 89 EEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQP 165 (219)
T ss_dssp HHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE--
T ss_pred hhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCC
Confidence 345555663 346789999643 22332 222222 3566899999543 2222333456899999
Q ss_pred CCHHHHHHHHHHhhcC
Q 004993 93 LADADALKLFSRCAFR 108 (720)
Q Consensus 93 L~~~es~~LF~~~af~ 108 (720)
+++++-.+++.++|-.
T Consensus 166 pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 166 PDDEDRRRILQKKAKE 181 (219)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888753
No 130
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=68.45 E-value=9.2 Score=33.95 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhCCCCCCccccccchHHHHHhcCCCe-EEEEEecCCCh---HHHHHHHccCCCCCCCcEEEEEeCC
Q 004993 3 AHLRQELLSTLLNDDGNVKIIPNIGLNFESKRLTRKK-VLIVFDDVTDR---KQIEFLIGELDSFASGSLIIITTRD 75 (720)
Q Consensus 3 ~~lq~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr-~LlVLDDv~~~---~~~~~l~~~~~~~~~gSrIivTTR~ 75 (720)
..+.++++.++....... .+.+.+.+.+.+.+++.+ .+||+||++.. +.++.|..-.+ ..+-+||++.+.
T Consensus 52 ~~~~~~i~~~l~~~~~~~-~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 52 RDFAQEILEALGLPLKSR-QTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHT-SSSST-S-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHHHhCcccccc-CCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 356677788877766542 455667788888886655 59999999765 34677765544 677788887766
No 131
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=67.87 E-value=4 Score=23.55 Aligned_cols=19 Identities=47% Similarity=0.962 Sum_probs=16.2
Q ss_pred CccEEEccCCCcccccCCC
Q 004993 347 TLISLQLRESKVEQLWDGV 365 (720)
Q Consensus 347 ~L~~L~L~~n~i~~l~~~~ 365 (720)
+|..|++++++++.+|++.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 4788999999999998764
No 132
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=67.36 E-value=6.6 Score=36.71 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=38.7
Q ss_pred hHHHHHhcCCCeE-EEEEecCCCh-----HHHHHHHccCCCCCCCcEEEEEeCChhHHhhcCCCcEEEcCC
Q 004993 28 LNFESKRLTRKKV-LIVFDDVTDR-----KQIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVKE 92 (720)
Q Consensus 28 ~~~i~~~L~~kr~-LlVLDDv~~~-----~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~~ 92 (720)
.+..++.++..+| |||||++-.. -..+.+...+....++--||+|.|+..=.-.-.+|.+-+|++
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 4455666655555 9999999543 123344433334446778999999965322223566666665
No 133
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=67.04 E-value=30 Score=36.27 Aligned_cols=95 Identities=8% Similarity=0.089 Sum_probs=58.3
Q ss_pred CeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 004993 38 KKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDHPV 113 (720)
Q Consensus 38 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~~ 113 (720)
.+-+||+|+++.. +..+.+...+......+++|++|... .+.+.. .....+++++++.++..+.....+-+.....
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4568999998743 34555555555555667788777432 222111 1134689999999999888877665432211
Q ss_pred hhHHHHHHHHHHHhcCCCchH
Q 004993 114 ACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 114 ~~~~~l~~~i~~~c~GlPLal 134 (720)
+ .+....+++.++|.+--+
T Consensus 182 ~--~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 182 T--DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred C--HHHHHHHHHHcCCCHHHH
Confidence 1 334566788888876553
No 134
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.47 E-value=13 Score=40.64 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=61.9
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEe-CChhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITT-RDKQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-++|+|++... ++++.+...+....+.+.+|++| +-+.+.+... ...++++++++.+|..+.....+-.....
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668899999754 46888877776666677776665 4445543321 13578999999998887776655322111
Q ss_pred ChhHHHHHHHHHHHhcCCCchH
Q 004993 113 VACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal 134 (720)
. -.+.+..++.+++|.+--+
T Consensus 206 i--~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 206 V--DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred C--CHHHHHHHHHHcCCCHHHH
Confidence 1 1345677888999966533
No 135
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=66.45 E-value=14 Score=36.76 Aligned_cols=99 Identities=20% Similarity=0.159 Sum_probs=52.3
Q ss_pred EEEEEecCCChH--HHHHHHccCCC-CCCCcE-EEEEeCChhHHh--------hcCCCcEEEcCCCCHHHHHHHHHHhhc
Q 004993 40 VLIVFDDVTDRK--QIEFLIGELDS-FASGSL-IIITTRDKQVLI--------NCWADKIYEVKELADADALKLFSRCAF 107 (720)
Q Consensus 40 ~LlVLDDv~~~~--~~~~l~~~~~~-~~~gSr-IivTTR~~~v~~--------~~~~~~~~~l~~L~~~es~~LF~~~af 107 (720)
-+||+||+.... +-+.+...+.. ...|.. ||+|++...... .+.....+++++|++++-..+..+.+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 478899996432 22223222211 124443 666665432211 222236889999999876666654332
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCchHHHHhhh
Q 004993 108 RQDHPVACYMELTYKIIKYAQGVPLALKVLGLF 140 (720)
Q Consensus 108 ~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~ 140 (720)
......+ ++....+++.+.|.+..+..+-..
T Consensus 172 ~~~v~l~--~~al~~L~~~~~gn~~~l~~~l~~ 202 (227)
T PRK08903 172 ERGLQLA--DEVPDYLLTHFRRDMPSLMALLDA 202 (227)
T ss_pred HcCCCCC--HHHHHHHHHhccCCHHHHHHHHHH
Confidence 2111111 345566677788888877655443
No 136
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.14 E-value=27 Score=39.75 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=61.8
Q ss_pred CCCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCC-hhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRD-KQVLINC-WADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
.+++-++|+|+++. ...++.|...+.......++|.+|.+ ..+.... .-..+++++.++.++..+...+.+-+...
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi 196 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI 196 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 35667999999974 45577877777665566766655544 3444332 22468999999999987776654432211
Q ss_pred CChhHHHHHHHHHHHhcCCCc-hHHHH
Q 004993 112 PVACYMELTYKIIKYAQGVPL-ALKVL 137 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~GlPL-al~~l 137 (720)
. --.+....+++.++|-+- |+..+
T Consensus 197 ~--~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 197 N--SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 113344667888888553 44333
No 137
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.05 E-value=24 Score=39.25 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=62.5
Q ss_pred CCCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEE-EEeCChhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLII-ITTRDKQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIi-vTTR~~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
.+++-++|+|+|.. ..+++.|...+.........| .||....+..... -...|.++.++.++..+...+.+-....
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 35666899999975 456888877665444455544 4555455544432 2458999999999888877766533221
Q ss_pred CChhHHHHHHHHHHHhcCCCchH
Q 004993 112 PVACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~GlPLal 134 (720)
.. -.+....|++.++|-+--+
T Consensus 199 ~~--e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 199 QY--DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred CC--CHHHHHHHHHHcCChHHHH
Confidence 11 2345678899999887543
No 138
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=65.90 E-value=24 Score=41.10 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=59.3
Q ss_pred CCeEEEEEecCCChH--HHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDRK--QIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~~--~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-++|+|++.... ..+.|...+..-....++|++|.+.+ +.... +-...+.++.++.++..+...+.+-+....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 566688999997643 35555555544345667777775543 32221 223468888999999888887655332221
Q ss_pred ChhHHHHHHHHHHHhcCCCchH
Q 004993 113 VACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal 134 (720)
. -.+....|++.++|-+.-+
T Consensus 198 i--d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 198 Y--EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred c--CHHHHHHHHHHhCCCHHHH
Confidence 1 1345577888888877544
No 139
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=65.37 E-value=24 Score=41.67 Aligned_cols=92 Identities=22% Similarity=0.357 Sum_probs=55.4
Q ss_pred CCeEEEEEecCC--ChHHHHHHHccCCCCCCCcEEEEE--eCChh--HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCC
Q 004993 37 RKKVLIVFDDVT--DRKQIEFLIGELDSFASGSLIIIT--TRDKQ--VLINC-WADKIYEVKELADADALKLFSRCAFRQ 109 (720)
Q Consensus 37 ~kr~LlVLDDv~--~~~~~~~l~~~~~~~~~gSrIivT--TR~~~--v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~ 109 (720)
+++.+||||||+ +..+++.|..... .|+.|+|+ |++.. +.... .-..++.+++|+.+|..+++.+.+-..
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 467899999996 4567777765433 46666664 34321 22211 124579999999999999988765310
Q ss_pred -----CCCChhHHHHHHHHHHHhcCCC
Q 004993 110 -----DHPVACYMELTYKIIKYAQGVP 131 (720)
Q Consensus 110 -----~~~~~~~~~l~~~i~~~c~GlP 131 (720)
.....--++....+++++.|.-
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1111111344566777787753
No 140
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=65.22 E-value=91 Score=33.24 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=62.4
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCC-hhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRD-KQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++=.+|+|+++.. ...+.|...+..-.++..+|.+|.+ ..++... +-...+.+++++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 34447778999754 5588888777666677777666665 5555553 235689999999999998887642 1
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHHh
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVLG 138 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~lg 138 (720)
.+ ....+..++|-|+.+..+.
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778899998655443
No 141
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.49 E-value=31 Score=38.59 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=61.3
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCC-hhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRD-KQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-+||+|+++.. .+.+.|...+........+|++|.+ ..+.+... ...++++++++.++..+...+.+-.....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 46679999999754 4466666655544444554444433 44544332 24689999999999888887766432211
Q ss_pred ChhHHHHHHHHHHHhcC-CCchHHHHhh
Q 004993 113 VACYMELTYKIIKYAQG-VPLALKVLGL 139 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~G-lPLal~~lg~ 139 (720)
.+ .+....|+++++| ++.|+..+-.
T Consensus 196 i~--~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 196 ID--REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CC--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 3345667777754 5666655544
No 142
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.25 E-value=4.5 Score=25.05 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=9.5
Q ss_pred CccEEEccCCCcccccC
Q 004993 347 TLISLQLRESKVEQLWD 363 (720)
Q Consensus 347 ~L~~L~L~~n~i~~l~~ 363 (720)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555553
No 143
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=63.62 E-value=6.3 Score=38.99 Aligned_cols=51 Identities=24% Similarity=0.353 Sum_probs=30.6
Q ss_pred CeEEEEEecCCChH---HHHHHHccCCCCCCCcEEEEEeCChhHHhhcCCCcEEEc
Q 004993 38 KKVLIVFDDVTDRK---QIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEV 90 (720)
Q Consensus 38 kr~LlVLDDv~~~~---~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l 90 (720)
.-=++|||||+..- ....+...+....+.+.+||||.++.++... +..|.|
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a--~~~~~v 211 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA--DKLIGV 211 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT---SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--cccccc
Confidence 34488999998542 3444444443445678999999999998764 444444
No 144
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.00 E-value=41 Score=38.96 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=63.1
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChh-HHhh-cCCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQ-VLIN-CWADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~-~~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+|+-++|+|+|... ...+.|...+.....+.++|++|.+.+ +... .+....++++.++.++..+...+.+-+....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 56668889999854 457777766655556778888887643 2212 1224689999999999888887665433211
Q ss_pred ChhHHHHHHHHHHHhcCCCchHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~ 135 (720)
. -.+....|++.++|-+-.+.
T Consensus 197 i--d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 197 A--DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred C--CHHHHHHHHHHcCCCHHHHH
Confidence 1 13345678888888665443
No 145
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.90 E-value=42 Score=40.23 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=65.6
Q ss_pred CCCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
++++-++|||++.. ....+.|...+.......++|.+|.+. .+.... .-...|++++|+.++..+.+.+.+-...
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg- 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ- 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-
Confidence 35677999999975 456888777766555667776666554 444332 2246899999999999988876553321
Q ss_pred CChhHHHHHHHHHHHhcCCCchHH
Q 004993 112 PVACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~GlPLal~ 135 (720)
..--.+....|++.++|.|-.+.
T Consensus 196 -I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 196 -LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHH
Confidence 11123456778999999775443
No 146
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=59.81 E-value=61 Score=34.08 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=61.0
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDHPV 113 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~~ 113 (720)
+++=++|+|+++.. ...+.|...+..-.++-=|++|++-..+..... -...+.++++++++..+......-... .
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~ 200 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--L 200 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--c
Confidence 56668889998754 446666655544333433444445555555433 356899999999999999987642211 1
Q ss_pred hhHHHHHHHHHHHhcCCCchHHHH
Q 004993 114 ACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 114 ~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
. .....++..++|-|..+..+
T Consensus 201 ~---~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 201 N---INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred h---hHHHHHHHHcCCCHHHHHHH
Confidence 1 11257789999999766543
No 147
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.53 E-value=31 Score=37.19 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=57.1
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEe-CChhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITT-RDKQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-+||+|+++.. ..++.+...+........+|++| +.+.+.... ....+++.++++.++..+.....+-+....
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 45557999998754 34777665444434455666555 333333221 223578999999999988888776543321
Q ss_pred ChhHHHHHHHHHHHhcCCCc
Q 004993 113 VACYMELTYKIIKYAQGVPL 132 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPL 132 (720)
.+ .+....++++++|-+-
T Consensus 187 i~--~~al~~l~~~~~gdlr 204 (367)
T PRK14970 187 FE--DDALHIIAQKADGALR 204 (367)
T ss_pred CC--HHHHHHHHHhCCCCHH
Confidence 11 3455667777877544
No 148
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.52 E-value=4.9 Score=24.08 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=10.2
Q ss_pred ccccccccchhhHHHHHHHHH
Q 004993 520 NLSDCLKLDQNELKGIAEDAL 540 (720)
Q Consensus 520 ~~L~~L~L~~N~l~~~~~~~~ 540 (720)
++|+.|+|++|.|++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 345556666666655544444
No 149
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=57.80 E-value=66 Score=36.49 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-++|+|++... +..+.|...+....+..++|++|.+. .+.... .-...+++++++.++..+...+.+-.....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568899999754 45677766665555678877777664 222211 124689999999999888876655332221
Q ss_pred ChhHHHHHHHHHHHhcCCCchHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~ 135 (720)
.+ .+....+++.++|-+--+.
T Consensus 196 i~--~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 196 YE--PEALEILARSGNGSLRDTL 216 (535)
T ss_pred CC--HHHHHHHHHHcCCcHHHHH
Confidence 11 3456778888888775543
No 150
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.71 E-value=7.9 Score=24.02 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=9.2
Q ss_pred CCccEEEccCCCcccc
Q 004993 346 DTLISLQLRESKVEQL 361 (720)
Q Consensus 346 ~~L~~L~L~~n~i~~l 361 (720)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665443
No 151
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.44 E-value=46 Score=37.32 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=62.3
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEe-CChhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITT-RDKQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++=++|+|+|... +..+.|...+..-.+..++|.+| ..+.+.+.. .....++++.++.++..+.+.+.+-+....
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 45557899999743 45777776666555677776655 444554443 235689999999999988888776543322
Q ss_pred ChhHHHHHHHHHHHhcCCCch
Q 004993 113 VACYMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLa 133 (720)
.+ .+....|++.++|-+-.
T Consensus 195 i~--~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 195 HD--EESLKLIAENSSGSMRN 213 (491)
T ss_pred CC--HHHHHHHHHHcCCCHHH
Confidence 11 33456788888876653
No 152
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=57.39 E-value=35 Score=39.55 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=63.2
Q ss_pred CCCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCC-hhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRD-KQVLINC-WADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
.+++-++|+|+|+. ....+.|...+.......++|.+|.+ ..+.... .-...|.++.++.++..+...+.+-....
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 35667899999974 45577777666554456666555555 4444332 22568999999999998888765522221
Q ss_pred CChhHHHHHHHHHHHhcCCCchHHH
Q 004993 112 PVACYMELTYKIIKYAQGVPLALKV 136 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~GlPLal~~ 136 (720)
.. -.+....|++.++|.+-.+..
T Consensus 197 ~~--e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 197 PF--EPRALQLLARAADGSMRDALS 219 (647)
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHH
Confidence 11 134456788999997764433
No 153
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=57.39 E-value=1.2e+02 Score=36.60 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=60.7
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCC-hhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRD-KQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++=++|||+++.. ...+.|...+..-.....+|++|.+ ..+.... .-..+|+++.++.++..+.+.+..-.....
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45557889999754 5577777777666667777666543 4455443 235689999999998887776644222211
Q ss_pred ChhHHHHHHHHHHHhcCCCch
Q 004993 113 VACYMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLa 133 (720)
. -.+....|++.++|-+..
T Consensus 199 i--d~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 199 V--EPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred C--CHHHHHHHHHHcCCCHHH
Confidence 1 123345678888887643
No 154
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=56.71 E-value=86 Score=34.90 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=58.1
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeC-ChhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTR-DKQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR-~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-+||+|+++.. +..+.|...+.....+..+|++|. .+.+.+.. .....++++.++.++..+...+.+-+....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 56678899998744 345666655554445666766664 33443322 224588999999999888777655332211
Q ss_pred ChhHHHHHHHHHHHhcCCCc
Q 004993 113 VACYMELTYKIIKYAQGVPL 132 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPL 132 (720)
. -.+....++++++|.+-
T Consensus 200 i--~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 200 T--SREALLPIARAAQGSLR 217 (451)
T ss_pred C--CHHHHHHHHHHcCCCHH
Confidence 1 13455678888888553
No 155
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=56.57 E-value=42 Score=36.62 Aligned_cols=65 Identities=22% Similarity=0.159 Sum_probs=50.7
Q ss_pred CeEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCChhHHhhcC------CCcEEEcCCCCHHHHHHHHH
Q 004993 38 KKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCW------ADKIYEVKELADADALKLFS 103 (720)
Q Consensus 38 kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~------~~~~~~l~~L~~~es~~LF~ 103 (720)
++.+++||.|.....|+.....+-+.++. +|++|+-+..+..... -...+++-+|+-.|-..+-.
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG 164 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc
Confidence 67899999999999999877777666666 8999998877655431 23588999999998876543
No 156
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.63 E-value=49 Score=38.33 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=58.9
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEe-CChhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITT-RDKQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++=++|+|+++.. ...+.|...+..-.....+|.+| +-+.+.+.. ....+++++.++.++..+...+.+-.....
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34457899999754 44777776666555566665555 445554432 335689999999999887776554322211
Q ss_pred ChhHHHHHHHHHHHhcCCCc
Q 004993 113 VACYMELTYKIIKYAQGVPL 132 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPL 132 (720)
. -.+.+..+++.++|-.-
T Consensus 206 I--~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 206 I--DADALQLIARKAQGSMR 223 (620)
T ss_pred C--CHHHHHHHHHHhCCCHH
Confidence 1 13455678888988444
No 157
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.23 E-value=50 Score=38.30 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=61.6
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEe-CChhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITT-RDKQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++=++|+|++... ..++.|...+..-..++.+|.+| +.+.+.+.. ....+++++.++.++..+...+.+-+....
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34557899998754 45777777666555677766555 555555443 235689999999999988887765433221
Q ss_pred ChhHHHHHHHHHHHhcCCCch
Q 004993 113 VACYMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLa 133 (720)
.+ .+....++++++|-.--
T Consensus 200 i~--~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 200 AE--PEALNVIAQKADGGMRD 218 (614)
T ss_pred CC--HHHHHHHHHHcCCCHHH
Confidence 11 23456788888885543
No 158
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=54.86 E-value=46 Score=35.07 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=61.7
Q ss_pred CCeEEEEEecCCChH--HHHHHHccCCCCCCCcEEEEEeCC-hhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDRK--QIEFLIGELDSFASGSLIIITTRD-KQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~~--~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++=++|+|+++... .=+.|...+..-..++.+|.+|.+ ..++.... -...+.+..++.+++.+...... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 455688899998653 345555444444467777777765 45554432 35688999999999988886531 1
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHHh
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVLG 138 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~lg 138 (720)
. ..-+..++..++|-|+.+..+.
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1225677999999999765544
No 159
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=54.82 E-value=59 Score=37.38 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=42.7
Q ss_pred EEEEecCCCh---HHHH----HHHccCCCCCCCcEEEEEeCCh---------hHHhhcCCCcEEEcCCCCHHHHHHHHHH
Q 004993 41 LIVFDDVTDR---KQIE----FLIGELDSFASGSLIIITTRDK---------QVLINCWADKIYEVKELADADALKLFSR 104 (720)
Q Consensus 41 LlVLDDv~~~---~~~~----~l~~~~~~~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~es~~LF~~ 104 (720)
+|||||+... +.|+ .+...+. ..|..|||||+.. .+...+...-+++++..+.+.-.+++.+
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 7889999643 2232 2222222 3456688888752 2333344466899999999999999988
Q ss_pred hhcC
Q 004993 105 CAFR 108 (720)
Q Consensus 105 ~af~ 108 (720)
++-.
T Consensus 458 ka~~ 461 (617)
T PRK14086 458 KAVQ 461 (617)
T ss_pred HHHh
Confidence 7743
No 160
>PRK04195 replication factor C large subunit; Provisional
Probab=54.72 E-value=61 Score=36.45 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=57.2
Q ss_pred CeEEEEEecCCChH------HHHHHHccCCCCCCCcEEEEEeCChhH-Hh-hc-CCCcEEEcCCCCHHHHHHHHHHhhcC
Q 004993 38 KKVLIVFDDVTDRK------QIEFLIGELDSFASGSLIIITTRDKQV-LI-NC-WADKIYEVKELADADALKLFSRCAFR 108 (720)
Q Consensus 38 kr~LlVLDDv~~~~------~~~~l~~~~~~~~~gSrIivTTR~~~v-~~-~~-~~~~~~~l~~L~~~es~~LF~~~af~ 108 (720)
++-+||+|+++... .++.+..... ..+..||+||.+..- .. .. .....++++.++.++..+.....+..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 67899999997642 2555554443 234457777754321 11 11 22457899999999988887776643
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCchHH
Q 004993 109 QDHPVACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 109 ~~~~~~~~~~l~~~i~~~c~GlPLal~ 135 (720)
.....+ .+....|++.++|-.-++.
T Consensus 176 egi~i~--~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 176 EGIECD--DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred cCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 322111 3456778888888655543
No 161
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.40 E-value=63 Score=37.33 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=62.9
Q ss_pred CCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCC-hhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRD-KQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-+||+|+++. .+..+.|...+........+|++|.+ ..+.+.. .-...++++.++.++..+.+.+.+-.....
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4566899999974 35577777666555566777766644 3344322 224578899999999888887766543221
Q ss_pred ChhHHHHHHHHHHHhcCCCchHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~ 135 (720)
.+ .+....+++.++|.+..+.
T Consensus 199 i~--~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 199 LE--PGALEAIARAATGSMRDAE 219 (585)
T ss_pred CC--HHHHHHHHHHcCCCHHHHH
Confidence 11 3456678889999876543
No 162
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.37 E-value=80 Score=36.56 Aligned_cols=96 Identities=11% Similarity=0.163 Sum_probs=61.8
Q ss_pred CeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCC-hhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 004993 38 KKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRD-KQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHPV 113 (720)
Q Consensus 38 kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~~ 113 (720)
+.-++|||+|+. ...++.+...+..-....++|.+|.+ ..+.... .-...++++.++.++..+.+.+.+-+.....
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i 203 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA 203 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 445789999985 45588887776655556666665544 4444332 2246899999999998888877654322211
Q ss_pred hhHHHHHHHHHHHhcCCCchHH
Q 004993 114 ACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 114 ~~~~~l~~~i~~~c~GlPLal~ 135 (720)
+ .+....+++.++|-+--+.
T Consensus 204 e--~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 204 E--PQALRLLARAARGSMRDAL 223 (618)
T ss_pred C--HHHHHHHHHHcCCCHHHHH
Confidence 1 3445677888888665443
No 163
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.61 E-value=13 Score=22.78 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=8.2
Q ss_pred CCCCEEcccCCcCc
Q 004993 464 SKLELLHLKNCSKL 477 (720)
Q Consensus 464 ~~L~~L~L~~~~~l 477 (720)
++|++|+|++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 45666666666543
No 164
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=49.16 E-value=1.2e+02 Score=33.14 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=48.9
Q ss_pred EEEEEecCCCh---HHH-HHHHccCCC-CCCCcEEEEEeCC-hh--------HHhhcCCCcEEEcCCCCHHHHHHHHHHh
Q 004993 40 VLIVFDDVTDR---KQI-EFLIGELDS-FASGSLIIITTRD-KQ--------VLINCWADKIYEVKELADADALKLFSRC 105 (720)
Q Consensus 40 ~LlVLDDv~~~---~~~-~~l~~~~~~-~~~gSrIivTTR~-~~--------v~~~~~~~~~~~l~~L~~~es~~LF~~~ 105 (720)
-+|||||+... +.+ +.+...+.. ...|..||+||.. .. +...+....++++++.+.++-.+++.++
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 37889999742 111 122221111 1234567777753 22 2222223357899999999999988887
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCc
Q 004993 106 AFRQDHPVACYMELTYKIIKYAQGVPL 132 (720)
Q Consensus 106 af~~~~~~~~~~~l~~~i~~~c~GlPL 132 (720)
+-......+ +++...|++++.|..-
T Consensus 281 ~~~~~~~l~--~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 281 AEEEGLELP--DEVLEFIAKNIRSNVR 305 (405)
T ss_pred HHHcCCCCC--HHHHHHHHHhcCCCHH
Confidence 643221111 3445556666665444
No 165
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=48.85 E-value=83 Score=33.26 Aligned_cols=92 Identities=9% Similarity=0.134 Sum_probs=62.6
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDK-QVLINCW-ADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++=.+|+|+++.. ...+.|...+..-.++..+|.||.+. .++.... -...+.+.+++.++..+........
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~---- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA---- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc----
Confidence 45557779999865 44777776666556677777777664 5555533 3568999999999999888765311
Q ss_pred ChhHHHHHHHHHHHhcCCCchHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~ 135 (720)
+ ...+...+..++|-|+.+.
T Consensus 182 -~--~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 182 -E--ISEILTALRINYGRPLLAL 201 (325)
T ss_pred -C--hHHHHHHHHHcCCCHHHHH
Confidence 1 1124567888999996443
No 166
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=48.66 E-value=1.2e+02 Score=35.63 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=59.9
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEE-EEeCChhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLII-ITTRDKQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIi-vTTR~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-++|+|++... ..++.|...+........+| +||+-..+.... .....+++++++.++..+.....+-+....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 55668899999743 45777777665544555555 455555554432 234689999999999888877654332211
Q ss_pred ChhHHHHHHHHHHHhcCCCc
Q 004993 113 VACYMELTYKIIKYAQGVPL 132 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPL 132 (720)
.+ .+.+..+++.++|-+-
T Consensus 197 id--~eAl~~LA~lS~GslR 214 (725)
T PRK07133 197 YE--KNALKLIAKLSSGSLR 214 (725)
T ss_pred CC--HHHHHHHHHHcCCCHH
Confidence 11 2345678888888654
No 167
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=47.94 E-value=79 Score=36.51 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=61.7
Q ss_pred CeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEe-CChhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 004993 38 KKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITT-RDKQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDHPV 113 (720)
Q Consensus 38 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~~ 113 (720)
++=++|+|++... ...+.|...+..-...+++|++| +...+..... -...++++.++.++..+.+.+.+-+.....
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i 211 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV 211 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 4446899999654 44777776665555677776555 4444544432 246899999999999888877654332111
Q ss_pred hhHHHHHHHHHHHhcCCCchHH
Q 004993 114 ACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 114 ~~~~~l~~~i~~~c~GlPLal~ 135 (720)
+ .+....|++.++|-+.-+.
T Consensus 212 ~--~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 212 E--DEALALIARAAEGSVRDGL 231 (598)
T ss_pred C--HHHHHHHHHHcCCCHHHHH
Confidence 1 2455778888888776543
No 168
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=46.66 E-value=63 Score=35.85 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=49.6
Q ss_pred CeEEEEEecCCCh---H----HHHHHHccCCCCCCCcEEEEEeC-ChhHHh--------hcCCCcEEEcCCCCHHHHHHH
Q 004993 38 KKVLIVFDDVTDR---K----QIEFLIGELDSFASGSLIIITTR-DKQVLI--------NCWADKIYEVKELADADALKL 101 (720)
Q Consensus 38 kr~LlVLDDv~~~---~----~~~~l~~~~~~~~~gSrIivTTR-~~~v~~--------~~~~~~~~~l~~L~~~es~~L 101 (720)
+.-+||+||+... . ++-.+...+. ..|..||+||+ ...-+. .+....+.++++.+.++-.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 4458999999742 1 2222222222 23446888874 332222 223345889999999999999
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHhcCC
Q 004993 102 FSRCAFRQDHPVACYMELTYKIIKYAQGV 130 (720)
Q Consensus 102 F~~~af~~~~~~~~~~~l~~~i~~~c~Gl 130 (720)
..+++-......+ +++...|++++.|.
T Consensus 272 L~~~~~~~~~~l~--~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 272 ARKMLEIEHGELP--EEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHhcCCCCC--HHHHHHHHhccccC
Confidence 8887643221111 33455566655553
No 169
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=45.86 E-value=57 Score=37.44 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=59.5
Q ss_pred CeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEe-CChhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 004993 38 KKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITT-RDKQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHPV 113 (720)
Q Consensus 38 kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~~ 113 (720)
+| ++|+|+++. ...++.|...+........+|.+| .-..+.... .....+++++++.++....+...+-+.....
T Consensus 120 ~K-VIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I 198 (605)
T PRK05896 120 YK-VYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI 198 (605)
T ss_pred cE-EEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 44 599999975 455777776655444566666555 444443332 2245889999999999888777654322111
Q ss_pred hhHHHHHHHHHHHhcCCCc-hHHHH
Q 004993 114 ACYMELTYKIIKYAQGVPL-ALKVL 137 (720)
Q Consensus 114 ~~~~~l~~~i~~~c~GlPL-al~~l 137 (720)
+ .+.+..+++.++|-+- |+..+
T Consensus 199 s--~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 199 E--DNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred C--HHHHHHHHHHcCCcHHHHHHHH
Confidence 1 2345678888888554 44333
No 170
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=45.16 E-value=26 Score=33.83 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=40.6
Q ss_pred chHHHHHhcCCCeE-EEEEecCCChH-----HHHHHHccCCCCCCCcEEEEEeCChhHHhhcCCCcEEEcCC
Q 004993 27 GLNFESKRLTRKKV-LIVFDDVTDRK-----QIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVKE 92 (720)
Q Consensus 27 ~~~~i~~~L~~kr~-LlVLDDv~~~~-----~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~~ 92 (720)
+-+..++.+...+| |||||.+-..- ..+.+...+....++--||+|-|+..-.-.-.+|.+.+|++
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 44556677766555 99999995432 24444444444456778999999874322223455666665
No 171
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=45.14 E-value=1.2e+02 Score=34.77 Aligned_cols=97 Identities=9% Similarity=0.094 Sum_probs=62.3
Q ss_pred CCCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCC-hhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRD-KQVLINC-WADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
.+++=++|+|++... .+++.|...+........+|.+|.+ +.+.+.. .....++.+.++.++..+...+.+.....
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 355667889999754 4578887777655566666666544 4443332 22457899999999988888776644332
Q ss_pred CChhHHHHHHHHHHHhcCCCchH
Q 004993 112 PVACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~GlPLal 134 (720)
..+ .+....+++.++|-+-.+
T Consensus 197 ~id--~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 197 KYE--DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred CCC--HHHHHHHHHHcCCCHHHH
Confidence 211 345566788888876544
No 172
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=44.72 E-value=40 Score=29.87 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=27.4
Q ss_pred cCCCeEEEEEecCCCh-----HHHHHHHccCCCC---CCCcEEEEEeCChh
Q 004993 35 LTRKKVLIVFDDVTDR-----KQIEFLIGELDSF---ASGSLIIITTRDKQ 77 (720)
Q Consensus 35 L~~kr~LlVLDDv~~~-----~~~~~l~~~~~~~---~~gSrIivTTR~~~ 77 (720)
...++.+||+||++.. ..+..+....... ..+.+||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3457789999999953 2233333333222 46788999988754
No 173
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=44.03 E-value=1.9e+02 Score=30.17 Aligned_cols=68 Identities=10% Similarity=0.198 Sum_probs=40.7
Q ss_pred CCeEEEEEecCCCh---HHHHHHHccCCCCCCCcEEEEEeCChhHH-hhc-CCCcEEEcCCCCHHHHHHHHHH
Q 004993 37 RKKVLIVFDDVTDR---KQIEFLIGELDSFASGSLIIITTRDKQVL-INC-WADKIYEVKELADADALKLFSR 104 (720)
Q Consensus 37 ~kr~LlVLDDv~~~---~~~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~es~~LF~~ 104 (720)
+.+-+||+||++.. +..+.+...+.....+.++|+||....-+ ... +...++.++..+.++..+++..
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 34557889999754 23344444344445778999999764321 111 1124677777888887766543
No 174
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.10 E-value=1.2e+02 Score=35.05 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEe-CChhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITT-RDKQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++=++|+|++.. ....+.|...+.......++|.+| ....+.... +-...|+.+.++.++..+...+.+-+....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 4555889999974 456777777776655666666555 445554432 225689999999999888776655432221
Q ss_pred ChhHHHHHHHHHHHhcCCCc
Q 004993 113 VACYMELTYKIIKYAQGVPL 132 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPL 132 (720)
.+ .+....|+++++|-+-
T Consensus 197 i~--~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 197 VD--DAVYPLVIRAGGGSPR 214 (584)
T ss_pred CC--HHHHHHHHHHcCCCHH
Confidence 11 2345667888888664
No 175
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.63 E-value=80 Score=35.91 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=59.8
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-++|+|+++.. ...+.+...+.......++|.+|.+. .+.... .-...++++.++.++..+...+.+-.....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999854 34777776666555667777766554 333221 113578999999998887776654322211
Q ss_pred ChhHHHHHHHHHHHhcCCCch
Q 004993 113 VACYMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLa 133 (720)
. -.+....+++.++|.+--
T Consensus 198 ~--~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 198 F--DATALQLLARAAAGSMRD 216 (527)
T ss_pred C--CHHHHHHHHHHcCCCHHH
Confidence 1 133446788888886653
No 176
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=42.12 E-value=1.3e+02 Score=31.17 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=43.9
Q ss_pred eEEEEEecCCC-----------hHHHHHHHccCCCCCCCcEEEEEeCChhHHhhc--------CCCcEEEcCCCCHHHHH
Q 004993 39 KVLIVFDDVTD-----------RKQIEFLIGELDSFASGSLIIITTRDKQVLINC--------WADKIYEVKELADADAL 99 (720)
Q Consensus 39 r~LlVLDDv~~-----------~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~--------~~~~~~~l~~L~~~es~ 99 (720)
.-+|+||++.. .+.++.|.........+-+||++|.....-... .....++++.++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 36888999963 223455555554444566777776543222111 12457899999999999
Q ss_pred HHHHHhhc
Q 004993 100 KLFSRCAF 107 (720)
Q Consensus 100 ~LF~~~af 107 (720)
+++...+-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99887753
No 177
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.41 E-value=1.5e+02 Score=34.57 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=61.0
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCC-hhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRD-KQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-++|+|+++.. +.++.|...+..-.....+|.+|.+ ..+.... .....++++.++.++..+.+.+.+-+....
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 44557899999854 5577777766654445555555544 3444332 234578889999988887777665432211
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALKV 136 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~ 136 (720)
.+ .+....++++++|.+..+..
T Consensus 200 is--~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 200 IE--PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred CC--HHHHHHHHHHcCCCHHHHHH
Confidence 11 24467888899987765443
No 178
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=41.13 E-value=29 Score=32.88 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=40.0
Q ss_pred chHHHHHhcCCCeE-EEEEecCCChH-----HHHHHHccCCCCCCCcEEEEEeCChhHHhhcCCCcEEEcCC
Q 004993 27 GLNFESKRLTRKKV-LIVFDDVTDRK-----QIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVKE 92 (720)
Q Consensus 27 ~~~~i~~~L~~kr~-LlVLDDv~~~~-----~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~~ 92 (720)
+.+..++.+...+| |||||.+...- ..+.+...+....++--||+|-|+..-.-.-.+|.+.+|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence 44556677766655 99999985332 23334433334456778999999873322223566666665
No 179
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=40.04 E-value=37 Score=32.30 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=39.2
Q ss_pred chHHHHHhcCCCe-EEEEEecCCChH-----HHHHHHccCCCCCCCcEEEEEeCChhHHhhcCCCcEEEcC
Q 004993 27 GLNFESKRLTRKK-VLIVFDDVTDRK-----QIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVK 91 (720)
Q Consensus 27 ~~~~i~~~L~~kr-~LlVLDDv~~~~-----~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~ 91 (720)
+-+..++.+.... =|||||.+...- ..+.+...+....++--||+|-|+..=.-.-.+|.+.+|+
T Consensus 103 ~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~VTEm~ 173 (178)
T PRK07414 103 LWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQITELR 173 (178)
T ss_pred HHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCeeeeee
Confidence 3455666675554 499999995432 2444444444445677899999985432222356666654
No 180
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=39.65 E-value=3.2e+02 Score=28.54 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=59.1
Q ss_pred CCeEEEEEecCCChH--HHHHHHccCCCCCCCcEEEEEe-CChhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDRK--QIEFLIGELDSFASGSLIIITT-RDKQVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~~--~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++=++|+||++... ..+.|...+..-.+++.+|.+| .-+.+.+.. +...++++++++.++..+..... + .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~--~---~ 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK--N---K 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc--C---C
Confidence 466778889887553 4677776666666777777655 445566543 34678999999999998777653 1 1
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALKV 136 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~ 136 (720)
. ++.+..++..++|.--|+..
T Consensus 164 ~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 164 E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred C---hhHHHHHHHHcCCHHHHHHH
Confidence 1 13355566666663344444
No 181
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.78 E-value=2e+02 Score=32.40 Aligned_cols=97 Identities=8% Similarity=0.042 Sum_probs=58.5
Q ss_pred CCCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeC-ChhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTR-DKQVLINC-WADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR-~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
.+++-++|+|+++.. ...+.|...+....+...+|++|. -..+.... .....+.+++++.++..+.+...+-....
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 356678999998744 456676665555445556665554 33333321 22357899999999988877765533221
Q ss_pred CChhHHHHHHHHHHHhcCCCchH
Q 004993 112 PVACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~GlPLal 134 (720)
.. -.+....++..++|.+-.+
T Consensus 197 ~i--d~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 197 EY--EEKALDLLAQASEGGMRDA 217 (486)
T ss_pred CC--CHHHHHHHHHHcCCCHHHH
Confidence 11 1234456777888866544
No 182
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=38.68 E-value=1.1e+02 Score=34.03 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=40.2
Q ss_pred eEEEEEecCCChHH-------HHHHHccCCCCCCCcEEEEEeCCh---------hHHhhcCCCcEEEcCCCCHHHHHHHH
Q 004993 39 KVLIVFDDVTDRKQ-------IEFLIGELDSFASGSLIIITTRDK---------QVLINCWADKIYEVKELADADALKLF 102 (720)
Q Consensus 39 r~LlVLDDv~~~~~-------~~~l~~~~~~~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~es~~LF 102 (720)
.-+|++||+..... +-.+...+. ..|-.||+||... .+...+....++++++++.++-.+++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 34788899854311 112221111 2355788888542 22233334568899999999999998
Q ss_pred HHhhc
Q 004993 103 SRCAF 107 (720)
Q Consensus 103 ~~~af 107 (720)
.+++-
T Consensus 281 ~~k~~ 285 (445)
T PRK12422 281 ERKAE 285 (445)
T ss_pred HHHHH
Confidence 87764
No 183
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.03 E-value=1.5e+02 Score=33.59 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=57.7
Q ss_pred CCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
++.-++|+|+|+. ....+.+...+....+..++|.+|.+. .+.... +-...++++.++.++..+...+.+-.....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4555788999985 355777776666555677777766554 333222 123578899999888766554443222211
Q ss_pred ChhHHHHHHHHHHHhcCCCchH
Q 004993 113 VACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal 134 (720)
.+ .+....|++.++|-+--+
T Consensus 198 ~~--~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 198 FE--NAALDLLARAANGSVRDA 217 (509)
T ss_pred CC--HHHHHHHHHHcCCcHHHH
Confidence 11 233456788888876544
No 184
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=36.93 E-value=3.4e+02 Score=29.26 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=73.5
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHHhcC--CCeEEEEEecCCChH-----HHHHHHccCCCCCCCcEEEE--EeCC
Q 004993 5 LRQELLSTLLNDDGNVKIIPNIGLNFESKRLT--RKKVLIVFDDVTDRK-----QIEFLIGELDSFASGSLIII--TTRD 75 (720)
Q Consensus 5 lq~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~~-----~~~~l~~~~~~~~~gSrIiv--TTR~ 75 (720)
+-.+|+.++.+.. ...+...+..+.+.+.+. ++.++||||+++... -+-.|......+ +++|+| ++-+
T Consensus 89 i~~~i~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~ 165 (366)
T COG1474 89 VLSKILNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEecc
Confidence 3345555554222 222445566677777774 588999999997542 233333322222 565544 4444
Q ss_pred hhHHhhcCC-------CcEEEcCCCCHHHHHHHHHHhh---cCCCCCChhHHHHHHHHHHHhc-CCCchHHHH
Q 004993 76 KQVLINCWA-------DKIYEVKELADADALKLFSRCA---FRQDHPVACYMELTYKIIKYAQ-GVPLALKVL 137 (720)
Q Consensus 76 ~~v~~~~~~-------~~~~~l~~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~i~~~c~-GlPLal~~l 137 (720)
......... ...+..++-+.+|-.+....++ |......++..+++..++.+-+ -.-.||..+
T Consensus 166 ~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 166 DKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 443333321 1236788888888888887765 5555556666666655555555 455555554
No 185
>PRK04132 replication factor C small subunit; Provisional
Probab=36.76 E-value=1.9e+02 Score=34.89 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=63.5
Q ss_pred CeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 004993 38 KKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELADADALKLFSRCAFRQDHPV 113 (720)
Q Consensus 38 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~~ 113 (720)
+.-++|||+++.. .+.+.|...........++|.+|.+.+ +.... .-..++.+++++.++-.+...+.+-...-..
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4479999999865 467777766665556777777666553 33332 2256899999999988887766553322111
Q ss_pred hhHHHHHHHHHHHhcCCCchHH
Q 004993 114 ACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 114 ~~~~~l~~~i~~~c~GlPLal~ 135 (720)
+ ++....|++.|+|-+-.+.
T Consensus 710 ~--~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 T--EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred C--HHHHHHHHHHcCCCHHHHH
Confidence 1 3456789999999775543
No 186
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=36.45 E-value=1.2e+02 Score=32.90 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=46.0
Q ss_pred CCeEEEEEecCCCh-------------HH---HHHHHccCCCC--CCCcEEEEEeCChhHHhhc-----CCCcEEEcCCC
Q 004993 37 RKKVLIVFDDVTDR-------------KQ---IEFLIGELDSF--ASGSLIIITTRDKQVLINC-----WADKIYEVKEL 93 (720)
Q Consensus 37 ~kr~LlVLDDv~~~-------------~~---~~~l~~~~~~~--~~gSrIivTTR~~~v~~~~-----~~~~~~~l~~L 93 (720)
....+|+|||++.. +. +..+....+.. ..+-+||.||...+..... ..+..++++..
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 45689999999753 11 22222222221 2366788888765433221 23568999999
Q ss_pred CHHHHHHHHHHhhcCC
Q 004993 94 ADADALKLFSRCAFRQ 109 (720)
Q Consensus 94 ~~~es~~LF~~~af~~ 109 (720)
+.++-.++|..++.+.
T Consensus 303 ~~~~R~~Il~~~~~~~ 318 (389)
T PRK03992 303 DEEGRLEILKIHTRKM 318 (389)
T ss_pred CHHHHHHHHHHHhccC
Confidence 9999999999877543
No 187
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=36.43 E-value=1.9e+02 Score=30.27 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=50.2
Q ss_pred ccchHHHHHhcC--CCeEEEEEecCCCh--H----HHHHHHccCCCCCCCcEEEEEeCChhHHhhcCC------------
Q 004993 25 NIGLNFESKRLT--RKKVLIVFDDVTDR--K----QIEFLIGELDSFASGSLIIITTRDKQVLINCWA------------ 84 (720)
Q Consensus 25 ~~~~~~i~~~L~--~kr~LlVLDDv~~~--~----~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~------------ 84 (720)
+.....+.+.|. ++|.+||+||++.. + -|+.+..-+.. ++..+|+..-.+.|.+....
T Consensus 157 ~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~--~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~ 234 (325)
T PF07693_consen 157 EELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDF--PNIIFILAFDPEILEKAIEKNYGEGFDEIDGR 234 (325)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCC--CCeEEEEEecHHHHHHHHHhhcCcccccccHH
Confidence 334556666664 58999999999863 2 26666655542 67777777766666553321
Q ss_pred -------CcEEEcCCCCHHHHHHHHHHh
Q 004993 85 -------DKIYEVKELADADALKLFSRC 105 (720)
Q Consensus 85 -------~~~~~l~~L~~~es~~LF~~~ 105 (720)
+..+.++.++..+-.+.|...
T Consensus 235 ~yLeKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 235 EYLEKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HHHHhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 236777777776655555444
No 188
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=36.20 E-value=1.2e+02 Score=33.60 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=51.6
Q ss_pred eEEEEEecCCCh---HHH-HHHHccCCC-CCCCcEEEEEeCCh---------hHHhhcCCCcEEEcCCCCHHHHHHHHHH
Q 004993 39 KVLIVFDDVTDR---KQI-EFLIGELDS-FASGSLIIITTRDK---------QVLINCWADKIYEVKELADADALKLFSR 104 (720)
Q Consensus 39 r~LlVLDDv~~~---~~~-~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~es~~LF~~ 104 (720)
--+||||||... ..+ +.+...+.. ...|..||+||... .+...+....++++++++.++-.+++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 348899999632 111 222221111 12345688877643 1223333446899999999999999988
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCc
Q 004993 105 CAFRQDHPVACYMELTYKIIKYAQGVPL 132 (720)
Q Consensus 105 ~af~~~~~~~~~~~l~~~i~~~c~GlPL 132 (720)
++-...... -+++...|++.+.|..-
T Consensus 292 ~~~~~~~~l--~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 292 KAEEEGIDL--PDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHcCCCC--CHHHHHHHHcCcCCCHH
Confidence 875322111 13445566666666544
No 189
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=36.07 E-value=73 Score=35.56 Aligned_cols=79 Identities=18% Similarity=0.128 Sum_probs=52.9
Q ss_pred HHHhcCCCeEEEEEecCCChHHHHHHH------------c---cCCCCCCCcEEEEEeCChhHHhhcCC----CcEEEcC
Q 004993 31 ESKRLTRKKVLIVFDDVTDRKQIEFLI------------G---ELDSFASGSLIIITTRDKQVLINCWA----DKIYEVK 91 (720)
Q Consensus 31 i~~~L~~kr~LlVLDDv~~~~~~~~l~------------~---~~~~~~~gSrIivTTR~~~v~~~~~~----~~~~~l~ 91 (720)
..+.-++.--.||+||+...-+|-.|+ . ..+.-|+.==|+-||..+.|++.|+. +..|.|+
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 334446677899999997765544332 2 22323334446779999999999875 4689999
Q ss_pred CCCH-HHHHHHHHHh-hcCC
Q 004993 92 ELAD-ADALKLFSRC-AFRQ 109 (720)
Q Consensus 92 ~L~~-~es~~LF~~~-af~~ 109 (720)
.++. ++..+..+.. .|..
T Consensus 671 nl~~~~~~~~vl~~~n~fsd 690 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNIFSD 690 (744)
T ss_pred ccCchHHHHHHHHHccCCCc
Confidence 9998 7777777654 3543
No 190
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=34.95 E-value=2.3e+02 Score=29.26 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=54.7
Q ss_pred cCCCeEEEEEecCCC---hHHHHHHHccCCCCCCCcEEEEEeCChh-------HHhhcCCCcEEEcCCCCHHHHHHHHHH
Q 004993 35 LTRKKVLIVFDDVTD---RKQIEFLIGELDSFASGSLIIITTRDKQ-------VLINCWADKIYEVKELADADALKLFSR 104 (720)
Q Consensus 35 L~~kr~LlVLDDv~~---~~~~~~l~~~~~~~~~gSrIivTTR~~~-------v~~~~~~~~~~~l~~L~~~es~~LF~~ 104 (720)
|-++|-++|+++... ...++.+...+....++..+|++|..-+ ..+......++....++..+-.+....
T Consensus 43 lf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~ 122 (302)
T TIGR01128 43 LFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQA 122 (302)
T ss_pred cccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHH
Confidence 345667788988865 3457777766655556666777664211 222222345677788888777776666
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCch
Q 004993 105 CAFRQDHPVACYMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 105 ~af~~~~~~~~~~~l~~~i~~~c~GlPLa 133 (720)
.+-+....-+ .+.+..+++.++|...+
T Consensus 123 ~~~~~g~~i~--~~a~~~l~~~~~~d~~~ 149 (302)
T TIGR01128 123 RLKKLGLRID--PDAVQLLAELVEGNLLA 149 (302)
T ss_pred HHHHcCCCCC--HHHHHHHHHHhCcHHHH
Confidence 5543221111 23345555666554443
No 191
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=34.81 E-value=1.3e+02 Score=30.58 Aligned_cols=67 Identities=7% Similarity=0.168 Sum_probs=42.2
Q ss_pred EEEEEecCCC----------hHHHHHHHccCCCCCCCcEEEEEeCChhH----------HhhcCCCcEEEcCCCCHHHHH
Q 004993 40 VLIVFDDVTD----------RKQIEFLIGELDSFASGSLIIITTRDKQV----------LINCWADKIYEVKELADADAL 99 (720)
Q Consensus 40 ~LlVLDDv~~----------~~~~~~l~~~~~~~~~gSrIivTTR~~~v----------~~~~~~~~~~~l~~L~~~es~ 99 (720)
-+|++|++.. .++.+.+..........-++|+++..++. ... ....++++.++.+|-.
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELM 184 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHH
Confidence 4888999974 33456666555443333355555544332 112 2356889999999999
Q ss_pred HHHHHhhcC
Q 004993 100 KLFSRCAFR 108 (720)
Q Consensus 100 ~LF~~~af~ 108 (720)
+++.+.+-.
T Consensus 185 ~Il~~~~~~ 193 (261)
T TIGR02881 185 EIAERMVKE 193 (261)
T ss_pred HHHHHHHHH
Confidence 999877643
No 192
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=34.73 E-value=1.6e+02 Score=31.27 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=63.1
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++=.+|+|+++.. ..-+.|...+..-.++..+|.+|.+. .++... +-...+.+++++.+++.+...... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---M 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C---C
Confidence 45667889998754 44666666665556677777777764 466553 335578999999999988776432 1 1
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
. .+.+..++..++|.|.....+
T Consensus 183 ~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 223567899999999754433
No 193
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.31 E-value=21 Score=39.72 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=18.0
Q ss_pred CCCccEEecCCCcC-CCCCCCCc--CCcccceeecccccccc
Q 004993 368 LVNLKEIDLSYSRQ-LKKLPDLS--QARNLENLLLKACSSLV 406 (720)
Q Consensus 368 L~~L~~L~Ls~n~~-~~~~p~l~--~l~~L~~L~L~~~~~~~ 406 (720)
.++|+.|+|++|.. ....+++. +...|++|.+.||.+..
T Consensus 243 apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 45566666666511 11111111 12236667777766544
No 194
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=31.02 E-value=1.6e+02 Score=27.37 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=48.0
Q ss_pred CCeEEEEEecC------CChHHHHHHHccCCCCCCCcEEEEEeC-Chh----HHhhcC-CCcEEEcCCCCHHHHHHHHHH
Q 004993 37 RKKVLIVFDDV------TDRKQIEFLIGELDSFASGSLIIITTR-DKQ----VLINCW-ADKIYEVKELADADALKLFSR 104 (720)
Q Consensus 37 ~kr~LlVLDDv------~~~~~~~~l~~~~~~~~~gSrIivTTR-~~~----v~~~~~-~~~~~~l~~L~~~es~~LF~~ 104 (720)
+.|-+||+.+. +....++.+...+....+++.||+.+. ... ..+... ...+++...++..+.......
T Consensus 56 ~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~ 135 (172)
T PF06144_consen 56 GDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKE 135 (172)
T ss_dssp SSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHH
T ss_pred CCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHH
Confidence 35666666665 456779999888887778888888887 221 222222 233566677766666666655
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCchH
Q 004993 105 CAFRQDHPVACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 105 ~af~~~~~~~~~~~l~~~i~~~c~GlPLal 134 (720)
.+-+.... --.+.+..++++.+|.+.++
T Consensus 136 ~~~~~g~~--i~~~a~~~L~~~~~~d~~~l 163 (172)
T PF06144_consen 136 RAKKNGLK--IDPDAAQYLIERVGNDLSLL 163 (172)
T ss_dssp HHHHTT-E--E-HHHHHHHHHHHTT-HHHH
T ss_pred HHHHcCCC--CCHHHHHHHHHHhChHHHHH
Confidence 55332211 11334455556655555443
No 195
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.98 E-value=1.3e+02 Score=34.76 Aligned_cols=93 Identities=11% Similarity=0.134 Sum_probs=55.3
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEe-CChhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITT-RDKQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++=++|+|+|+.. ...+.|...+........+|.+| .-+.+..... ....++++.++.++..+.....+-.....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 34447889999754 44666666665544566666544 4455554432 24578899999988877766544322211
Q ss_pred ChhHHHHHHHHHHHhcCCC
Q 004993 113 VACYMELTYKIIKYAQGVP 131 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlP 131 (720)
.+ .+....++++++|-.
T Consensus 198 i~--~~al~~la~~a~G~l 214 (576)
T PRK14965 198 IS--DAALALVARKGDGSM 214 (576)
T ss_pred CC--HHHHHHHHHHcCCCH
Confidence 11 234456777777754
No 196
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=29.46 E-value=2.9e+02 Score=29.18 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=47.3
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhc-CCCcEEEcCCCCHHHHHHHHHH
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDK-QVLINC-WADKIYEVKELADADALKLFSR 104 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~es~~LF~~ 104 (720)
+++=.+|+|+++.. +.-+.|...+..-.+++.+|.+|++. .+.... +-..++++++++.++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 44456889998754 44667776666656788888777654 344433 2356899999999999887764
No 197
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=29.26 E-value=2.9e+02 Score=31.75 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=58.8
Q ss_pred CCCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEe-CChhHHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITT-RDKQVLINC-WADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
.+++-++|+|++... ..++.|...+..-.....+|++| .-..+.... .....++.+.++.++..+.+...+-+...
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 345667789999744 55777776665444455555444 444443332 22457889999999888887776543322
Q ss_pred CChhHHHHHHHHHHHhcCCCchH
Q 004993 112 PVACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~GlPLal 134 (720)
..+ .+....+++.++|-+..+
T Consensus 197 ~i~--~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 197 EYE--DEALRLIARAAEGGMRDA 217 (559)
T ss_pred CCC--HHHHHHHHHHcCCCHHHH
Confidence 111 344566777887766543
No 198
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=28.96 E-value=65 Score=30.90 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=36.0
Q ss_pred chHHHHHhcCCCeE-EEEEecCCC-----hHHHHHHHccCCCCCCCcEEEEEeCChh
Q 004993 27 GLNFESKRLTRKKV-LIVFDDVTD-----RKQIEFLIGELDSFASGSLIIITTRDKQ 77 (720)
Q Consensus 27 ~~~~i~~~L~~kr~-LlVLDDv~~-----~~~~~~l~~~~~~~~~gSrIivTTR~~~ 77 (720)
+-+..++.+.+.+| |||||.+.- .-.++.+...+..-....-||+|-|...
T Consensus 110 ~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap 166 (198)
T COG2109 110 GWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAP 166 (198)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCC
Confidence 34566777887676 899999953 3346666666655557888999998853
No 199
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.64 E-value=1.6e+02 Score=32.47 Aligned_cols=133 Identities=15% Similarity=0.088 Sum_probs=72.3
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHHhcCCC--eEEEEEecCCChHH--HHHHHccCCCC-CCCcEEEEEeCChhH-
Q 004993 5 LRQELLSTLLNDDGNVKIIPNIGLNFESKRLTRK--KVLIVFDDVTDRKQ--IEFLIGELDSF-ASGSLIIITTRDKQV- 78 (720)
Q Consensus 5 lq~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k--r~LlVLDDv~~~~~--~~~l~~~~~~~-~~gSrIivTTR~~~v- 78 (720)
+=+.|++.+..+.... ....+....+.+..+.. -+++|||.+++... =..|...|.|. -++||+|..--...+
T Consensus 222 iF~kI~~~~~q~~~s~-~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSP-GTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHHHhcCC-chhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 3355666664444322 22244556666666554 48999999986532 12233334443 368888765422211
Q ss_pred -----HhhcC-----CCcEEEcCCCCHHHHHHHHHHhhcCCCCC---ChhHHHHHHHHHHHhcCCCchHHHHh
Q 004993 79 -----LINCW-----ADKIYEVKELADADALKLFSRCAFRQDHP---VACYMELTYKIIKYAQGVPLALKVLG 138 (720)
Q Consensus 79 -----~~~~~-----~~~~~~l~~L~~~es~~LF~~~af~~~~~---~~~~~~l~~~i~~~c~GlPLal~~lg 138 (720)
+.... .......++-+.++-.+++..+.-..... ....+-.|++++.-.|.+--|+.+.-
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11111 23477888999999999999876432211 12344445555554555555555544
No 200
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=28.32 E-value=41 Score=21.04 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=6.2
Q ss_pred CccEEEccCCCc
Q 004993 347 TLISLQLRESKV 358 (720)
Q Consensus 347 ~L~~L~L~~n~i 358 (720)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555544
No 201
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.82 E-value=86 Score=31.18 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=45.1
Q ss_pred hHHHHHhcCCCeEEEEEecCCChHHHHHHH---ccCCC-CCCCcEEEEEeCChhHHhhcCCCcEEEc
Q 004993 28 LNFESKRLTRKKVLIVFDDVTDRKQIEFLI---GELDS-FASGSLIIITTRDKQVLINCWADKIYEV 90 (720)
Q Consensus 28 ~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~---~~~~~-~~~gSrIivTTR~~~v~~~~~~~~~~~l 90 (720)
...|-+.+--+.=|.|||..++--+.++++ ..... ..+|+-++|+|..+.++.....+.+|-+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl 218 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVL 218 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEE
Confidence 455666677778899999998765544433 22211 2468889999999999999888877654
No 202
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=27.69 E-value=44 Score=31.64 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=33.2
Q ss_pred cchHHHHHhcCCCeE-EEEEecCCChH-----HHHHHHccCCCCCCCcEEEEEeCChhHHhhcCCCcEEEcC
Q 004993 26 IGLNFESKRLTRKKV-LIVFDDVTDRK-----QIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVK 91 (720)
Q Consensus 26 ~~~~~i~~~L~~kr~-LlVLDDv~~~~-----~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~ 91 (720)
.+.+..++.+...+| |||||.|...- ..+.+...+..-.++.-||+|-|+..-.-.-.+|.+-+|+
T Consensus 83 ~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADlVTem~ 154 (172)
T PF02572_consen 83 EGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADLVTEMR 154 (172)
T ss_dssp HHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SEEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCeeeeec
Confidence 445667777766555 99999984322 2333333333345788899999997522211245555554
No 203
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=27.50 E-value=3.1e+02 Score=29.92 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=45.4
Q ss_pred CCCeEEEEEecCCCh------------H----HHHHHHccCCCC--CCCcEEEEEeCChhHHhh--c---CCCcEEEcCC
Q 004993 36 TRKKVLIVFDDVTDR------------K----QIEFLIGELDSF--ASGSLIIITTRDKQVLIN--C---WADKIYEVKE 92 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~------------~----~~~~l~~~~~~~--~~gSrIivTTR~~~v~~~--~---~~~~~~~l~~ 92 (720)
..+..+|++|+++.. . .+..+...++.. ..+-+||.||...+.+.. . ..+..++++.
T Consensus 236 ~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~ 315 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 315 (398)
T ss_pred hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCC
Confidence 457789999998642 0 122333333221 346678888886554432 1 2366789999
Q ss_pred CCHHHHHHHHHHhhc
Q 004993 93 LADADALKLFSRCAF 107 (720)
Q Consensus 93 L~~~es~~LF~~~af 107 (720)
.+.++-.++|..+.-
T Consensus 316 P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 316 PDRRQKRLIFQTITS 330 (398)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999998888876653
No 204
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=26.77 E-value=1.5e+02 Score=32.34 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=43.8
Q ss_pred eEEEEEecCCChH---H----HHHHHccCCCCCCCcEEEEEeCC---------hhHHhhcCCCcEEEcCCCCHHHHHHHH
Q 004993 39 KVLIVFDDVTDRK---Q----IEFLIGELDSFASGSLIIITTRD---------KQVLINCWADKIYEVKELADADALKLF 102 (720)
Q Consensus 39 r~LlVLDDv~~~~---~----~~~l~~~~~~~~~gSrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~es~~LF 102 (720)
-=++++||++-.. . +-.+...+. ..|-.||+|++. ..+....+..-++++.+++.+....+.
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 3388899996421 1 222333332 234489998843 344444455679999999999999999
Q ss_pred HHhhcC
Q 004993 103 SRCAFR 108 (720)
Q Consensus 103 ~~~af~ 108 (720)
.++|-.
T Consensus 254 ~kka~~ 259 (408)
T COG0593 254 RKKAED 259 (408)
T ss_pred HHHHHh
Confidence 887653
No 205
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=26.53 E-value=69 Score=29.92 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=35.9
Q ss_pred CeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCC
Q 004993 38 KKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELA 94 (720)
Q Consensus 38 kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~ 94 (720)
++=.+|+||++. .+..++|...+.....+.++|++|++.+ +.... +-...+.+++|+
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 455788999985 4557777777766678999999998775 44433 234567776653
No 206
>PRK07413 hypothetical protein; Validated
Probab=25.33 E-value=89 Score=33.66 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=40.1
Q ss_pred chHHHHHhcCCCeE-EEEEecCCChH-----HHHHHHccCCCCCCCcEEEEEeCC---hhHHhhcCCCcEEEcCCC
Q 004993 27 GLNFESKRLTRKKV-LIVFDDVTDRK-----QIEFLIGELDSFASGSLIIITTRD---KQVLINCWADKIYEVKEL 93 (720)
Q Consensus 27 ~~~~i~~~L~~kr~-LlVLDDv~~~~-----~~~~l~~~~~~~~~gSrIivTTR~---~~v~~~~~~~~~~~l~~L 93 (720)
+.+..++.+....| |||||.+...- ..+.+...+....++.-||+|-|+ +.+... +|.+-+|+..
T Consensus 293 ~~~~a~~~i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~--ADlVTEm~~v 366 (382)
T PRK07413 293 AWEIARAAIASGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDL--ASVHSEMVCH 366 (382)
T ss_pred HHHHHHHHHhCCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHh--Cchheecccc
Confidence 34556666765544 99999995432 244444444444567889999998 455443 4555555543
No 207
>CHL00181 cbbX CbbX; Provisional
Probab=25.09 E-value=4.6e+02 Score=27.10 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=45.1
Q ss_pred EEEEEecCCC-----------hHHHHHHHccCCCCCCCcEEEEEeCChhHHhhc--------CCCcEEEcCCCCHHHHHH
Q 004993 40 VLIVFDDVTD-----------RKQIEFLIGELDSFASGSLIIITTRDKQVLINC--------WADKIYEVKELADADALK 100 (720)
Q Consensus 40 ~LlVLDDv~~-----------~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~--------~~~~~~~l~~L~~~es~~ 100 (720)
-+|+||++.. .+..+.|.........+-+||.+|..+.+.... ..+..+..++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 4889999964 233445555444444566777777654432211 234589999999999999
Q ss_pred HHHHhhcC
Q 004993 101 LFSRCAFR 108 (720)
Q Consensus 101 LF~~~af~ 108 (720)
++.+.+-+
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98877644
No 208
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=24.80 E-value=3.7e+02 Score=28.19 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=45.9
Q ss_pred CCeEEEEEecC-----CChHHHHHHHccCCCCCCCcEEEEEeCCh--------hHHhhcCCCcEEEcC---CCCHHHHHH
Q 004993 37 RKKVLIVFDDV-----TDRKQIEFLIGELDSFASGSLIIITTRDK--------QVLINCWADKIYEVK---ELADADALK 100 (720)
Q Consensus 37 ~kr~LlVLDDv-----~~~~~~~~l~~~~~~~~~gSrIivTTR~~--------~v~~~~~~~~~~~l~---~L~~~es~~ 100 (720)
+.|=+||++|. +..+.++.+...+....+.+.+|+++..+ ..++..+ .+.... +.+.++..+
T Consensus 60 ~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~--~~~~~~~~~~~~~~~l~~ 137 (326)
T PRK07452 60 SGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLA--EEKEFSLIPPWDTEGLKQ 137 (326)
T ss_pred CCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHce--eEEEecCCCcccHHHHHH
Confidence 34555667765 23455666666666555677777765432 1122222 233332 334444344
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchH
Q 004993 101 LFSRCAFRQDHPVACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 101 LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal 134 (720)
.....+-+.....+ .+.+..++++++|...++
T Consensus 138 ~i~~~~~~~g~~i~--~~a~~~L~~~~g~dl~~l 169 (326)
T PRK07452 138 LVERTAQELGVKLT--PEAAELLAEAVGNDSRRL 169 (326)
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHHhCccHHHH
Confidence 44444322221111 244566677777665544
No 209
>CHL00176 ftsH cell division protein; Validated
Probab=23.53 E-value=8.4e+02 Score=28.53 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=50.1
Q ss_pred HHHHhcCCCeEEEEEecCCCh------------H----HHHHHHccCCCC--CCCcEEEEEeCChhHHhh-c----CCCc
Q 004993 30 FESKRLTRKKVLIVFDDVTDR------------K----QIEFLIGELDSF--ASGSLIIITTRDKQVLIN-C----WADK 86 (720)
Q Consensus 30 ~i~~~L~~kr~LlVLDDv~~~------------~----~~~~l~~~~~~~--~~gSrIivTTR~~~v~~~-~----~~~~ 86 (720)
.+.+..+...++|+|||++.. . .+..+....+.+ ..|-.||.||...+.... . .-+.
T Consensus 267 lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~ 346 (638)
T CHL00176 267 LFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDR 346 (638)
T ss_pred HHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCce
Confidence 344445667899999999632 1 144444333322 345677778877554332 1 2356
Q ss_pred EEEcCCCCHHHHHHHHHHhhcC
Q 004993 87 IYEVKELADADALKLFSRCAFR 108 (720)
Q Consensus 87 ~~~l~~L~~~es~~LF~~~af~ 108 (720)
.+.++..+.++-.+++..++-.
T Consensus 347 ~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 347 QITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 8899999999988988877643
No 210
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=22.58 E-value=1.3e+02 Score=33.28 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=46.8
Q ss_pred CCCeEEEEEecCCChH----------------HHHHHHccCCCC--CCCcEEEEEeCChhHHhhc-----CCCcEEEcCC
Q 004993 36 TRKKVLIVFDDVTDRK----------------QIEFLIGELDSF--ASGSLIIITTRDKQVLINC-----WADKIYEVKE 92 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~~----------------~~~~l~~~~~~~--~~gSrIivTTR~~~v~~~~-----~~~~~~~l~~ 92 (720)
...+.+|+||+++..- .+-.+...++.+ ..+-+||.||...+.+... ..+..++++.
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~ 353 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPN 353 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCC
Confidence 4567899999975320 122222222221 3466788888866555431 2356899999
Q ss_pred CCHHHHHHHHHHhhcC
Q 004993 93 LADADALKLFSRCAFR 108 (720)
Q Consensus 93 L~~~es~~LF~~~af~ 108 (720)
.+.++..++|..++-+
T Consensus 354 Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 354 PDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999987644
No 211
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=22.28 E-value=5.2e+02 Score=27.29 Aligned_cols=85 Identities=12% Similarity=0.176 Sum_probs=47.1
Q ss_pred CeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 004993 38 KKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELADADALKLFSRCAFRQDHPV 113 (720)
Q Consensus 38 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~~ 113 (720)
.|+. |+|++... ..-+.+...+.....+..+|+||.+.+ +.... .....+.+++++.+++.+....... .
T Consensus 114 ~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~ 187 (325)
T PRK08699 114 LRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGV-----A 187 (325)
T ss_pred ceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCC-----C
Confidence 3444 45777643 233333333322234566777777654 54432 2246889999999999887765311 1
Q ss_pred hhHHHHHHHHHHHhcCCCch
Q 004993 114 ACYMELTYKIIKYAQGVPLA 133 (720)
Q Consensus 114 ~~~~~l~~~i~~~c~GlPLa 133 (720)
... ..+..++|-|+.
T Consensus 188 ~~~-----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EPE-----ERLAFHSGAPLF 202 (325)
T ss_pred cHH-----HHHHHhCCChhh
Confidence 111 113568898864
No 212
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.24 E-value=78 Score=37.94 Aligned_cols=112 Identities=23% Similarity=0.253 Sum_probs=64.8
Q ss_pred CCeEEEEEecCCCh---HHHHHH----HccCCCCCCCcEEEEEeCChhHHhhcCCCc---EEEcCCCCHHHHHHHHHHhh
Q 004993 37 RKKVLIVFDDVTDR---KQIEFL----IGELDSFASGSLIIITTRDKQVLINCWADK---IYEVKELADADALKLFSRCA 106 (720)
Q Consensus 37 ~kr~LlVLDDv~~~---~~~~~l----~~~~~~~~~gSrIivTTR~~~v~~~~~~~~---~~~l~~L~~~es~~LF~~~a 106 (720)
.++-|+++|..-.. ..-..+ ...+. ..|..||+||.+.+++....... .+.+.. +++. +--.+-
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~--d~~~--l~~~Yk 479 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF--DEET--LRPTYR 479 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE--ecCc--CcEEEE
Confidence 37889999998643 222222 22221 35789999999998877643221 122211 1111 111111
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCCCHHHHHHHHHHHhc
Q 004993 107 FRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLET 158 (720)
Q Consensus 107 f~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~ 158 (720)
+....+.. --|-.|++++ |+|-.+..-|..+.+....+.+..+.+|..
T Consensus 480 l~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 480 LLIGIPGK---SNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred EeeCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 21222221 1245566655 999999999999988777788888887754
Done!