Query 004993
Match_columns 720
No_of_seqs 745 out of 4429
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 12:06:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-33 4.5E-38 320.0 16.2 236 3-248 201-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 5.2E-27 1.8E-31 292.4 16.5 230 6-246 199-452 (1249)
3 3rgz_A Protein brassinosteroid 99.9 1.3E-26 4.3E-31 274.0 14.6 249 281-537 399-721 (768)
4 3rgz_A Protein brassinosteroid 99.9 1.3E-26 4.6E-31 273.7 12.8 266 280-545 347-681 (768)
5 1vt4_I APAF-1 related killer D 99.9 8.2E-27 2.8E-31 268.3 8.3 193 24-239 227-436 (1221)
6 1ogq_A PGIP-2, polygalacturona 99.9 6E-26 2.1E-30 238.9 13.7 241 280-531 54-302 (313)
7 4fcg_A Uncharacterized protein 99.9 1.9E-25 6.6E-30 236.6 16.4 225 298-533 79-314 (328)
8 1ogq_A PGIP-2, polygalacturona 99.9 2E-25 6.9E-30 234.9 8.3 235 300-545 50-292 (313)
9 3v47_A TOLL-like receptor 5B a 99.9 1.1E-24 3.7E-29 241.7 13.7 134 280-413 34-175 (455)
10 2id5_A Lingo-1, leucine rich r 99.9 2.1E-24 7.2E-29 241.0 14.2 262 280-542 36-318 (477)
11 3v47_A TOLL-like receptor 5B a 99.9 7.1E-24 2.4E-28 235.1 17.0 137 393-537 276-412 (455)
12 4fcg_A Uncharacterized protein 99.9 1.1E-24 3.8E-29 230.8 9.8 212 323-545 80-302 (328)
13 2z66_A Variable lymphocyte rec 99.9 6E-24 2.1E-28 222.9 13.7 244 281-535 12-263 (306)
14 1z6t_A APAF-1, apoptotic prote 99.9 6E-24 2E-28 243.8 12.3 209 22-242 218-448 (591)
15 2ft3_A Biglycan; proteoglycan, 99.9 3.2E-23 1.1E-27 220.1 15.8 240 280-533 58-307 (332)
16 2z7x_B TOLL-like receptor 1, v 99.9 5.2E-23 1.8E-27 232.3 18.1 101 280-381 25-127 (520)
17 3t6q_A CD180 antigen; protein- 99.9 3.3E-23 1.1E-27 238.4 14.8 262 277-544 255-524 (606)
18 3t6q_A CD180 antigen; protein- 99.9 4.7E-23 1.6E-27 237.2 15.9 256 280-545 282-548 (606)
19 1xku_A Decorin; proteoglycan, 99.9 2.1E-22 7.1E-27 213.5 19.4 241 280-533 56-306 (330)
20 3oja_B Anopheles plasmodium-re 99.9 1.1E-22 3.9E-27 233.3 18.5 249 281-535 56-360 (597)
21 2id5_A Lingo-1, leucine rich r 99.9 6.2E-23 2.1E-27 229.1 15.4 255 280-534 60-334 (477)
22 3o6n_A APL1; leucine-rich repe 99.9 1.7E-22 5.7E-27 219.5 18.3 242 288-535 57-354 (390)
23 3zyi_A Leucine-rich repeat-con 99.9 2.9E-22 9.8E-27 222.1 19.6 224 300-533 75-303 (452)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.6E-23 2.9E-27 232.7 15.3 250 280-538 56-446 (562)
25 4eco_A Uncharacterized protein 99.9 9.3E-24 3.2E-28 243.9 6.8 256 277-545 82-458 (636)
26 3zyj_A Leucine-rich repeat-con 99.9 3.1E-22 1.1E-26 221.0 18.6 224 300-533 64-292 (440)
27 2z66_A Variable lymphocyte rec 99.9 1.5E-22 5.2E-27 212.2 15.0 224 280-511 32-263 (306)
28 1xku_A Decorin; proteoglycan, 99.9 1E-21 3.5E-26 208.2 18.7 241 281-538 36-281 (330)
29 4fmz_A Internalin; leucine ric 99.9 1.1E-21 3.8E-26 209.3 19.1 252 281-545 49-312 (347)
30 2z80_A TOLL-like receptor 2, v 99.9 6.3E-23 2.1E-27 219.7 9.1 237 300-537 52-318 (353)
31 3zyi_A Leucine-rich repeat-con 99.9 1.8E-21 6.1E-26 215.6 20.3 220 280-509 79-303 (452)
32 4eco_A Uncharacterized protein 99.9 6.1E-22 2.1E-26 228.7 16.0 239 281-532 310-578 (636)
33 1ozn_A Reticulon 4 receptor; N 99.9 9.7E-22 3.3E-26 203.8 15.9 221 303-534 14-239 (285)
34 3zyj_A Leucine-rich repeat-con 99.9 2.7E-21 9.3E-26 213.4 20.0 220 280-509 68-292 (440)
35 4ecn_A Leucine-rich repeat pro 99.9 1.5E-22 5.1E-27 238.6 10.3 255 277-544 324-697 (876)
36 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-22 2E-26 228.0 13.6 226 298-534 326-559 (606)
37 4ecn_A Leucine-rich repeat pro 99.9 2.7E-21 9.3E-26 227.8 19.3 224 295-532 568-818 (876)
38 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-21 4.9E-26 233.1 17.0 94 433-534 283-376 (844)
39 2ft3_A Biglycan; proteoglycan, 99.9 6E-21 2E-25 202.5 19.9 242 280-531 82-331 (332)
40 2z7x_B TOLL-like receptor 1, v 99.9 5.7E-22 1.9E-26 223.8 12.2 256 280-545 4-375 (520)
41 3bz5_A Internalin-J, INLJ; leu 99.9 3.1E-21 1.1E-25 213.4 17.5 223 296-534 123-353 (457)
42 3o53_A Protein LRIM1, AGAP0063 99.9 3.5E-22 1.2E-26 210.6 9.4 250 281-548 15-266 (317)
43 1ozn_A Reticulon 4 receptor; N 99.9 4.9E-21 1.7E-25 198.5 17.7 202 300-509 32-238 (285)
44 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-20 7.2E-25 213.2 24.5 223 300-545 61-309 (622)
45 3vq2_A TLR4, TOLL-like recepto 99.9 1E-21 3.4E-26 226.0 13.3 235 296-544 281-521 (606)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.4E-21 1.5E-25 218.6 17.8 97 280-381 80-181 (562)
47 1ziw_A TOLL-like receptor 3; i 99.9 4.2E-21 1.4E-25 224.0 17.6 266 280-545 29-354 (680)
48 4fmz_A Internalin; leucine ric 99.9 5E-21 1.7E-25 204.3 16.4 233 281-535 93-326 (347)
49 3oja_A Leucine-rich immune mol 99.9 7E-22 2.4E-26 220.6 10.1 231 298-546 32-264 (487)
50 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-21 4.7E-26 222.1 12.7 174 280-454 30-210 (549)
51 1jl5_A Outer protein YOPM; leu 99.8 3.9E-20 1.3E-24 204.5 21.8 245 280-543 135-421 (454)
52 1ziw_A TOLL-like receptor 3; i 99.8 1.3E-20 4.3E-25 219.9 18.8 256 282-545 335-610 (680)
53 4g8a_A TOLL-like receptor 4; l 99.8 1E-20 3.5E-25 218.4 17.7 125 280-404 56-185 (635)
54 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-21 4E-26 206.5 8.5 232 280-530 38-272 (317)
55 3rfs_A Internalin B, repeat mo 99.8 4.2E-21 1.5E-25 197.6 11.3 207 296-519 37-245 (272)
56 2z63_A TOLL-like receptor 4, v 99.8 2.8E-21 9.4E-26 220.5 10.8 226 301-537 305-535 (570)
57 3rfs_A Internalin B, repeat mo 99.8 1.8E-20 6.2E-25 192.9 15.9 210 320-545 37-247 (272)
58 2z63_A TOLL-like receptor 4, v 99.8 8.3E-21 2.8E-25 216.6 14.2 149 280-428 32-189 (570)
59 3o6n_A APL1; leucine-rich repe 99.8 1.4E-20 4.8E-25 204.3 14.8 236 298-545 43-319 (390)
60 3bz5_A Internalin-J, INLJ; leu 99.8 6.4E-20 2.2E-24 202.9 19.9 210 281-510 69-278 (457)
61 2o6q_A Variable lymphocyte rec 99.8 6.1E-20 2.1E-24 188.7 18.4 170 302-474 18-191 (270)
62 3j0a_A TOLL-like receptor 5; m 99.8 8.9E-21 3E-25 226.3 13.8 255 281-543 29-337 (844)
63 3oja_B Anopheles plasmodium-re 99.8 1.1E-20 3.9E-25 216.6 13.6 236 298-545 49-325 (597)
64 1wwl_A Monocyte differentiatio 99.8 7.2E-22 2.5E-26 207.7 3.2 220 302-534 65-310 (312)
65 3oja_A Leucine-rich immune mol 99.8 3.7E-21 1.3E-25 214.8 9.0 227 280-525 38-267 (487)
66 2z81_A CD282 antigen, TOLL-lik 99.8 1.4E-20 4.9E-25 213.7 13.9 193 282-478 11-210 (549)
67 1o6v_A Internalin A; bacterial 99.8 6.2E-20 2.1E-24 204.1 17.7 241 281-534 73-345 (466)
68 1o6v_A Internalin A; bacterial 99.8 5.1E-20 1.8E-24 204.7 16.9 195 323-537 176-370 (466)
69 2z80_A TOLL-like receptor 2, v 99.8 2E-21 7E-26 207.9 5.1 234 299-545 30-278 (353)
70 2z62_A TOLL-like receptor 4, v 99.8 3.9E-20 1.3E-24 190.8 14.0 202 324-534 28-238 (276)
71 2o6q_A Variable lymphocyte rec 99.8 6.5E-19 2.2E-23 181.0 20.2 201 324-533 16-218 (270)
72 4g8a_A TOLL-like receptor 4; l 99.8 2.5E-20 8.7E-25 215.1 9.8 131 300-430 52-187 (635)
73 2z62_A TOLL-like receptor 4, v 99.8 3E-19 1E-23 184.1 16.8 203 300-511 28-239 (276)
74 1wwl_A Monocyte differentiatio 99.8 4.9E-20 1.7E-24 193.6 10.2 200 298-510 93-310 (312)
75 1p9a_G Platelet glycoprotein I 99.8 6.1E-19 2.1E-23 183.1 17.5 199 296-508 6-207 (290)
76 1p9a_G Platelet glycoprotein I 99.8 1.3E-18 4.6E-23 180.5 18.1 193 281-477 15-208 (290)
77 1h6u_A Internalin H; cell adhe 99.8 6.7E-19 2.3E-23 184.5 12.5 195 297-511 38-232 (308)
78 1jl5_A Outer protein YOPM; leu 99.8 7.8E-18 2.7E-22 186.0 21.4 212 300-534 131-351 (454)
79 1h6u_A Internalin H; cell adhe 99.8 1.6E-18 5.4E-23 181.7 14.6 194 321-534 38-231 (308)
80 3m19_A Variable lymphocyte rec 99.8 2.8E-18 9.7E-23 174.2 15.3 178 324-510 14-193 (251)
81 2xwt_C Thyrotropin receptor; s 99.8 4E-18 1.4E-22 171.7 16.2 175 301-477 32-218 (239)
82 3m19_A Variable lymphocyte rec 99.8 9.6E-18 3.3E-22 170.3 17.5 178 347-534 15-193 (251)
83 2ca6_A RAN GTPase-activating p 99.7 2.1E-20 7.1E-25 202.7 -4.6 238 292-537 24-320 (386)
84 4glp_A Monocyte differentiatio 99.7 1.8E-18 6.3E-23 181.4 9.4 220 300-533 64-307 (310)
85 3cvr_A Invasion plasmid antige 99.7 1.9E-17 6.6E-22 186.6 17.8 196 325-545 60-255 (571)
86 4glp_A Monocyte differentiatio 99.7 8.3E-18 2.8E-22 176.4 12.6 199 298-510 89-308 (310)
87 2xwt_C Thyrotropin receptor; s 99.7 2.2E-17 7.5E-22 166.2 15.2 191 280-475 35-237 (239)
88 2ast_B S-phase kinase-associat 99.7 1.4E-19 4.8E-24 192.1 -2.3 182 293-475 61-258 (336)
89 3g06_A SSPH2 (leucine-rich rep 99.7 3.6E-17 1.2E-21 186.6 16.9 200 298-519 79-307 (622)
90 2o6s_A Variable lymphocyte rec 99.7 6.2E-17 2.1E-21 159.3 15.9 179 327-521 10-190 (208)
91 3cvr_A Invasion plasmid antige 99.7 2.8E-17 9.7E-22 185.2 11.6 186 301-518 60-252 (571)
92 1h6t_A Internalin B; cell adhe 99.7 6.9E-17 2.4E-21 167.7 13.6 170 323-510 45-214 (291)
93 2ast_B S-phase kinase-associat 99.7 2E-18 6.8E-23 183.2 0.8 221 301-533 48-284 (336)
94 3goz_A Leucine-rich repeat-con 99.7 8.8E-19 3E-23 188.1 -2.3 257 281-541 3-305 (362)
95 1m9s_A Internalin B; cell inva 99.7 1.7E-16 5.7E-21 180.8 15.3 173 296-478 39-211 (605)
96 1m9s_A Internalin B; cell inva 99.7 1.5E-16 5.2E-21 181.1 14.9 164 281-454 48-211 (605)
97 2ca6_A RAN GTPase-activating p 99.7 2.2E-18 7.5E-23 186.7 -0.9 225 280-512 36-319 (386)
98 1h6t_A Internalin B; cell adhe 99.7 9.2E-17 3.1E-21 166.8 11.4 173 296-478 42-214 (291)
99 2o6s_A Variable lymphocyte rec 99.7 6.6E-17 2.3E-21 159.1 8.9 179 349-544 10-189 (208)
100 4ezg_A Putative uncharacterize 99.7 1E-16 3.5E-21 156.3 10.1 128 322-474 42-169 (197)
101 4ay9_X Follicle-stimulating ho 99.7 1.5E-15 5.1E-20 162.0 18.0 217 300-530 30-256 (350)
102 1z7x_W Ribonuclease inhibitor; 99.7 2.2E-18 7.5E-23 191.1 -4.3 259 280-542 7-306 (461)
103 4ezg_A Putative uncharacterize 99.7 3E-16 1E-20 153.0 11.3 150 297-451 41-192 (197)
104 2v70_A SLIT-2, SLIT homolog 2 99.6 1E-15 3.5E-20 151.9 14.7 150 327-477 14-166 (220)
105 2v9t_B SLIT homolog 2 protein 99.6 1.8E-15 6E-20 150.3 15.0 148 327-475 14-163 (220)
106 3goz_A Leucine-rich repeat-con 99.6 1.6E-17 5.4E-22 178.3 0.0 233 304-544 2-277 (362)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 2E-15 6.9E-20 149.8 13.7 152 349-510 14-167 (220)
108 1z7x_W Ribonuclease inhibitor; 99.6 1.2E-17 3.9E-22 185.3 -3.4 18 492-509 394-411 (461)
109 2v9t_B SLIT homolog 2 protein 99.6 2.6E-15 8.8E-20 149.0 14.0 151 349-509 14-165 (220)
110 4ay9_X Follicle-stimulating ho 99.6 3.8E-15 1.3E-19 158.9 14.7 214 303-527 12-233 (350)
111 3e6j_A Variable lymphocyte rec 99.6 7.1E-15 2.4E-19 146.8 15.7 150 326-477 21-172 (229)
112 1xeu_A Internalin C; cellular 99.6 7.7E-16 2.6E-20 157.3 8.5 169 299-478 18-186 (263)
113 2xot_A Amphoterin-induced prot 99.6 2.7E-15 9.3E-20 160.7 13.1 148 327-476 21-175 (361)
114 2xot_A Amphoterin-induced prot 99.6 1.2E-15 4E-20 163.6 9.9 178 349-533 21-202 (361)
115 3e6j_A Variable lymphocyte rec 99.6 6.7E-15 2.3E-19 147.0 14.6 152 348-510 21-173 (229)
116 1xeu_A Internalin C; cellular 99.6 1.1E-15 3.7E-20 156.1 7.1 173 322-513 17-189 (263)
117 4b8c_D Glucose-repressible alc 99.6 9.1E-16 3.1E-20 179.0 4.0 145 334-481 211-358 (727)
118 4b8c_D Glucose-repressible alc 99.5 3.8E-15 1.3E-19 173.8 4.2 187 300-516 173-361 (727)
119 1w8a_A SLIT protein; signaling 99.5 9.6E-14 3.3E-18 134.5 12.4 126 327-453 11-139 (192)
120 1dce_A Protein (RAB geranylger 99.5 1.3E-16 4.5E-21 180.6 -9.8 121 393-526 442-566 (567)
121 1w8a_A SLIT protein; signaling 99.5 1.5E-13 5.2E-18 133.1 13.2 130 349-480 11-142 (192)
122 2ell_A Acidic leucine-rich nuc 99.5 7.9E-14 2.7E-18 131.9 10.5 131 345-476 23-159 (168)
123 1dce_A Protein (RAB geranylger 99.5 1.7E-16 6E-21 179.6 -10.0 180 344-537 347-550 (567)
124 2je0_A Acidic leucine-rich nuc 99.5 6.2E-14 2.1E-18 129.8 8.3 126 346-472 17-148 (149)
125 3ogk_B Coronatine-insensitive 99.4 9E-15 3.1E-19 167.4 0.5 240 296-536 216-504 (592)
126 2ell_A Acidic leucine-rich nuc 99.4 1.5E-13 5E-18 130.1 8.2 128 323-451 23-158 (168)
127 2wfh_A SLIT homolog 2 protein 99.4 5.9E-13 2E-17 129.0 12.6 125 327-452 13-138 (193)
128 2je0_A Acidic leucine-rich nuc 99.4 2E-13 6.9E-18 126.3 6.8 126 323-449 16-149 (149)
129 2wfh_A SLIT homolog 2 protein 99.4 1.2E-12 4.1E-17 126.9 12.4 125 349-476 13-138 (193)
130 2o6r_A Variable lymphocyte rec 99.4 2.7E-12 9.1E-17 122.5 12.8 99 327-426 10-110 (177)
131 3ogk_B Coronatine-insensitive 99.4 1E-14 3.6E-19 166.8 -6.0 244 297-541 161-459 (592)
132 1a9n_A U2A', U2A'; complex (nu 99.4 8.5E-13 2.9E-17 125.9 8.2 127 345-475 18-151 (176)
133 2o6r_A Variable lymphocyte rec 99.4 5.2E-12 1.8E-16 120.4 13.5 131 348-480 9-140 (177)
134 1a9n_A U2A', U2A'; complex (nu 99.3 1.3E-12 4.3E-17 124.7 8.0 127 323-452 18-152 (176)
135 2p1m_B Transport inhibitor res 99.2 1.4E-13 4.7E-18 157.5 -5.7 97 432-528 281-405 (594)
136 3sb4_A Hypothetical leucine ri 99.2 1.4E-11 4.9E-16 129.9 10.1 213 299-526 48-327 (329)
137 2p1m_B Transport inhibitor res 99.2 1.6E-13 5.5E-18 156.9 -5.6 168 367-534 287-495 (594)
138 1ds9_A Outer arm dynein; leuci 99.2 4E-14 1.4E-18 138.0 -10.9 131 336-470 37-180 (198)
139 1ds9_A Outer arm dynein; leuci 99.2 4E-13 1.4E-17 130.8 -5.6 146 357-509 36-185 (198)
140 4fdw_A Leucine rich hypothetic 99.1 8.6E-10 3E-14 119.2 18.5 225 290-533 148-383 (401)
141 3g39_A Variable lymphocyte rec 99.1 1.9E-10 6.6E-15 108.7 11.5 102 349-452 12-114 (170)
142 4fdw_A Leucine rich hypothetic 99.1 7.7E-10 2.6E-14 119.6 16.0 224 289-532 125-357 (401)
143 2r9u_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 107.3 11.5 100 350-451 16-116 (174)
144 3g39_A Variable lymphocyte rec 99.1 3.9E-10 1.3E-14 106.6 11.3 104 326-430 11-116 (170)
145 2r9u_A Variable lymphocyte rec 99.1 5.9E-10 2E-14 105.8 11.0 102 327-429 15-118 (174)
146 3sb4_A Hypothetical leucine ri 99.0 5.8E-10 2E-14 117.5 11.4 202 290-502 83-327 (329)
147 3un9_A NLR family member X1; l 98.9 3.6E-11 1.2E-15 128.8 -5.7 155 323-477 71-252 (372)
148 2ifg_A High affinity nerve gro 98.8 8.2E-09 2.8E-13 109.4 9.3 99 352-452 14-115 (347)
149 3un9_A NLR family member X1; l 98.8 3.1E-10 1E-14 121.5 -2.2 156 299-454 71-253 (372)
150 2ifg_A High affinity nerve gro 98.7 2.4E-08 8.4E-13 105.7 10.2 104 372-477 11-116 (347)
151 2ra8_A Uncharacterized protein 98.6 1.4E-08 4.7E-13 107.8 2.4 81 296-377 135-227 (362)
152 2ra8_A Uncharacterized protein 98.4 5.2E-08 1.8E-12 103.4 2.8 57 366-424 169-227 (362)
153 1w5s_A Origin recognition comp 98.2 4.5E-06 1.5E-10 90.3 12.0 213 4-225 102-371 (412)
154 2fna_A Conserved hypothetical 98.2 2.9E-06 1E-10 89.7 9.9 189 38-238 137-355 (357)
155 2qen_A Walker-type ATPase; unk 98.2 2.2E-05 7.5E-10 82.6 15.7 202 27-238 116-347 (350)
156 4fs7_A Uncharacterized protein 98.1 2.1E-05 7.3E-10 84.6 14.7 219 291-530 153-376 (394)
157 4gt6_A Cell surface protein; l 98.1 5.1E-05 1.8E-09 81.5 15.7 85 435-531 283-368 (394)
158 4fs7_A Uncharacterized protein 98.0 3.2E-05 1.1E-09 83.1 13.3 216 289-524 174-392 (394)
159 3e4g_A ATP synthase subunit S, 97.8 9.4E-06 3.2E-10 75.9 3.7 86 393-478 62-153 (176)
160 4gt6_A Cell surface protein; l 97.8 0.00034 1.2E-08 75.1 15.6 127 388-531 261-389 (394)
161 4h09_A Hypothetical leucine ri 97.7 0.00087 3E-08 71.3 18.4 66 288-356 57-123 (379)
162 1io0_A Tropomodulin; LRR prote 97.7 7.8E-06 2.7E-10 77.9 1.2 15 494-508 149-163 (185)
163 3rw6_A Nuclear RNA export fact 97.7 2E-05 6.9E-10 79.2 4.2 10 193-202 35-44 (267)
164 1io0_A Tropomodulin; LRR prote 97.7 6.8E-06 2.3E-10 78.4 0.6 86 391-476 64-163 (185)
165 2qby_B CDC6 homolog 3, cell di 97.7 0.0015 5.1E-08 69.6 19.0 210 5-225 99-339 (384)
166 3rw6_A Nuclear RNA export fact 97.7 1.1E-05 3.7E-10 81.2 1.6 67 413-481 167-237 (267)
167 3e4g_A ATP synthase subunit S, 97.6 1.7E-05 5.7E-10 74.2 2.7 43 338-380 52-96 (176)
168 1njg_A DNA polymerase III subu 97.2 0.00091 3.1E-08 65.7 9.5 102 36-139 124-229 (250)
169 2v1u_A Cell division control p 97.2 0.0043 1.5E-07 65.8 14.7 210 5-225 95-351 (387)
170 2qby_A CDC6 homolog 1, cell di 97.1 0.0025 8.6E-08 67.6 12.3 190 26-225 114-348 (386)
171 4h09_A Hypothetical leucine ri 97.0 0.012 4.1E-07 62.3 16.4 146 347-506 195-343 (379)
172 1fnn_A CDC6P, cell division co 96.0 0.075 2.6E-06 56.1 14.4 190 26-225 111-351 (389)
173 2chg_A Replication factor C sm 95.9 0.013 4.3E-07 56.5 7.2 99 37-137 101-203 (226)
174 1sxj_B Activator 1 37 kDa subu 95.5 0.016 5.5E-07 59.7 6.6 101 36-138 105-210 (323)
175 3rfe_A Platelet glycoprotein I 95.1 0.03 1E-06 49.4 6.1 52 328-380 12-66 (130)
176 3rfe_A Platelet glycoprotein I 94.8 0.04 1.4E-06 48.6 5.9 54 349-404 11-67 (130)
177 1hqc_A RUVB; extended AAA-ATPa 93.8 0.44 1.5E-05 48.7 12.4 148 30-191 79-261 (324)
178 1pgv_A TMD-1, tropomodulin TMD 93.4 0.019 6.6E-07 54.4 0.9 83 392-474 70-167 (197)
179 1iqp_A RFCS; clamp loader, ext 93.3 0.15 5E-06 52.4 7.7 100 37-138 109-212 (327)
180 1pgv_A TMD-1, tropomodulin TMD 92.9 0.044 1.5E-06 51.9 2.6 109 392-508 41-169 (197)
181 1jr3_A DNA polymerase III subu 89.6 0.69 2.3E-05 48.3 8.0 100 37-138 118-221 (373)
182 2chq_A Replication factor C sm 88.4 2.1 7.3E-05 43.2 10.6 98 37-136 101-202 (319)
183 1d2n_A N-ethylmaleimide-sensit 88.3 2.1 7.1E-05 42.5 10.2 119 33-158 119-263 (272)
184 3bos_A Putative DNA replicatio 84.7 0.4 1.4E-05 46.4 2.5 99 37-137 103-216 (242)
185 1a5t_A Delta prime, HOLB; zinc 81.4 4.2 0.00014 41.7 8.9 95 37-138 107-205 (334)
186 1sxj_A Activator 1 95 kDa subu 80.1 4.2 0.00014 44.6 8.8 97 37-138 147-253 (516)
187 1sxj_E Activator 1 40 kDa subu 78.7 3.6 0.00012 42.4 7.4 98 38-136 134-235 (354)
188 2z4s_A Chromosomal replication 77.7 2.6 8.9E-05 45.2 6.0 124 31-157 187-333 (440)
189 3h4m_A Proteasome-activating n 71.4 7.6 0.00026 38.5 7.3 90 36-129 108-221 (285)
190 1sxj_D Activator 1 41 kDa subu 70.2 13 0.00046 37.8 9.1 99 37-137 132-234 (353)
191 1jr3_D DNA polymerase III, del 63.3 17 0.00058 37.1 8.2 100 35-136 73-183 (343)
192 2qz4_A Paraplegin; AAA+, SPG7, 62.5 21 0.00073 34.4 8.5 96 36-132 96-215 (262)
193 3u61_B DNA polymerase accessor 57.3 27 0.00091 35.2 8.3 94 38-135 105-213 (324)
194 1l8q_A Chromosomal replication 55.3 14 0.00048 37.4 5.8 90 39-132 99-202 (324)
195 3syl_A Protein CBBX; photosynt 54.0 26 0.0009 34.8 7.6 68 39-108 131-219 (309)
196 3te6_A Regulatory protein SIR3 54.0 28 0.00096 35.2 7.6 100 5-106 97-211 (318)
197 3d8b_A Fidgetin-like protein 1 52.8 53 0.0018 33.6 9.8 100 37-138 175-295 (357)
198 2qp9_X Vacuolar protein sortin 52.3 95 0.0033 31.7 11.7 91 36-130 141-252 (355)
199 1g5t_A COB(I)alamin adenosyltr 49.3 9.5 0.00032 35.7 2.9 69 26-94 107-181 (196)
200 3eie_A Vacuolar protein sortin 49.1 81 0.0028 31.6 10.4 93 36-130 108-219 (322)
201 1xwi_A SKD1 protein; VPS4B, AA 45.8 1.5E+02 0.0053 29.5 11.9 98 36-137 103-222 (322)
202 3vfd_A Spastin; ATPase, microt 43.8 1.3E+02 0.0043 31.1 11.1 99 37-137 206-325 (389)
203 3uk6_A RUVB-like 2; hexameric 43.0 62 0.0021 32.9 8.5 90 40-135 191-300 (368)
204 2zan_A Vacuolar protein sortin 35.7 2E+02 0.0069 30.2 11.3 94 36-131 225-337 (444)
205 2lci_A Protein OR36; structura 33.9 91 0.0031 24.6 5.8 83 23-107 10-98 (134)
206 1sxj_C Activator 1 40 kDa subu 33.5 1.1E+02 0.0036 30.9 8.3 96 37-134 109-208 (340)
207 2gno_A DNA polymerase III, gam 33.3 28 0.00095 35.0 3.7 69 37-106 81-152 (305)
208 3pvs_A Replication-associated 31.9 70 0.0024 34.0 6.8 98 36-135 104-212 (447)
209 3b9p_A CG5977-PA, isoform A; A 30.7 3.1E+02 0.011 26.5 11.2 98 36-137 111-232 (297)
210 3pfi_A Holliday junction ATP-d 30.1 1E+02 0.0035 30.8 7.6 99 37-137 105-226 (338)
211 1jbk_A CLPB protein; beta barr 28.7 31 0.0011 30.9 3.0 65 36-102 113-194 (195)
212 4aby_A DNA repair protein RECN 26.0 83 0.0028 32.7 6.1 49 40-90 317-368 (415)
213 2c9o_A RUVB-like 1; hexameric 24.9 1.5E+02 0.0052 31.3 8.0 90 41-137 298-409 (456)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.3e-33 Score=319.99 Aligned_cols=236 Identities=15% Similarity=0.128 Sum_probs=189.8
Q ss_pred hHHHHHHHHHHhCCCC-CCcccc-----ccchHHHHHhcCCC-eEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCC
Q 004993 3 AHLRQELLSTLLNDDG-NVKIIP-----NIGLNFESKRLTRK-KVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRD 75 (720)
Q Consensus 3 ~~lq~~ll~~l~~~~~-~~~~~~-----~~~~~~i~~~L~~k-r~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~ 75 (720)
..++++|+.++..... ..+.+. +.+...+++.|++| ||||||||||+.+++ .+.. .+|||||||||+
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~ 274 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRD 274 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESB
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCC
Confidence 4688999999987643 111222 33488999999996 999999999999976 2221 289999999999
Q ss_pred hhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCCCHHHHHHHHH
Q 004993 76 KQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAIT 154 (720)
Q Consensus 76 ~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~~~~~W~~~l~ 154 (720)
+.|+..++ +..+|+|++|+.+|||+||.++||.... .+++++++++|+++|+|+||||+++|+.|+.++. +|...+.
T Consensus 275 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~ 352 (549)
T 2a5y_B 275 VEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLN 352 (549)
T ss_dssp GGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHH
T ss_pred HHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhH
Confidence 99999876 4578999999999999999999997643 4678899999999999999999999999988742 3333333
Q ss_pred H-HhcCCCchHHHHHHHhhcCCChhhhhhhc-----------ccccccCCCCHHHHHHHHHhC--CCCccc---------
Q 004993 155 K-LETVPHMEIQDVLKISYDGLDYVEQAMFL-----------DIACYFVGANKDFVINYFDAS--DFFPEI--------- 211 (720)
Q Consensus 155 ~-L~~~~~~~i~~~l~~syd~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~w~~~--g~~~~~--------- 211 (720)
. ++..+...+..++++||++||.++|.||+ |||+||++++.+ +++|+++ ||+...
T Consensus 353 ~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~ 430 (549)
T 2a5y_B 353 NKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEV 430 (549)
T ss_dssp HHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHH
T ss_pred HHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHH
Confidence 2 33324567888999999999999999999 999999998877 8999999 888533
Q ss_pred --chhhhhcccceEEe----CCeEEeeHHHHHHHHHHhhhhcc
Q 004993 212 --GLGRLVDKSLITIS----CNKIRMHDLLQDMGRKIDREAAI 248 (720)
Q Consensus 212 --~~~~L~~~~li~~~----~~~~~mHdLl~d~~~~i~~~~~~ 248 (720)
++++|++++|++.. ..+++|||++|++|++++.+++.
T Consensus 431 ~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 431 ADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 49999999999986 24799999999999999887653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=5.2e-27 Score=292.39 Aligned_cols=230 Identities=20% Similarity=0.231 Sum_probs=191.4
Q ss_pred HHHHHHHHhCCCCC---CccccccchHHHHHhcCCC--eEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCChhHHh
Q 004993 6 RQELLSTLLNDDGN---VKIIPNIGLNFESKRLTRK--KVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLI 80 (720)
Q Consensus 6 q~~ll~~l~~~~~~---~~~~~~~~~~~i~~~L~~k--r~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~ 80 (720)
.++++..+...... ...+.+.+.+.+++.|.+| |+||||||||+.++|+.+ ++|||||||||++.|+.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 45566666654421 1234556677788888777 999999999999988764 68999999999999996
Q ss_pred h-cCCCcEEEcCC-CCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCCCHHHHHHHHHHHhc
Q 004993 81 N-CWADKIYEVKE-LADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLET 158 (720)
Q Consensus 81 ~-~~~~~~~~l~~-L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~ 158 (720)
. ++....|+++. |+.+||++||...++.. .+++.+++++|+++|+|+||||+++|+.|+.+. .+|+..++++..
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQN 347 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHS
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhh
Confidence 5 45677899996 99999999999998643 344566799999999999999999999999876 579999999875
Q ss_pred CCC-----------chHHHHHHHhhcCCChhhhhhhcccccccCCC--CHHHHHHHHHhCCCCcccchhhhhcccceEEe
Q 004993 159 VPH-----------MEIQDVLKISYDGLDYVEQAMFLDIACYFVGA--NKDFVINYFDASDFFPEIGLGRLVDKSLITIS 225 (720)
Q Consensus 159 ~~~-----------~~i~~~l~~syd~L~~~~k~~fl~~a~f~~~~--~~~~l~~~w~~~g~~~~~~~~~L~~~~li~~~ 225 (720)
... ..+..++.+||+.||+++|.||+|||+||+++ +++.++.+|.+++..++..+++|++++|++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~ 427 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCN 427 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEE
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEe
Confidence 442 34899999999999999999999999999984 77889999988877778889999999999987
Q ss_pred -CC---eEEeeHHHHHHHHHHhhhh
Q 004993 226 -CN---KIRMHDLLQDMGRKIDREA 246 (720)
Q Consensus 226 -~~---~~~mHdLl~d~~~~i~~~~ 246 (720)
++ +++|||++|+++++...++
T Consensus 428 ~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 428 RNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred cCCCceEEEecHHHHHHHHhhhhHH
Confidence 34 4999999999999987654
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=1.3e-26 Score=273.98 Aligned_cols=249 Identities=20% Similarity=0.143 Sum_probs=136.9
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCC-CCCCCC-CCCCccEEEccCCCc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSK-SLPPVI-RLDTLISLQLRESKV 358 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~-~l~~L~~L~L~~n~i 358 (720)
++++++......+..|.++++|+.|++++|.+.+..+..++.+++|++|++++|.+. .+|..+ .+++|++|++++|++
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 344444444444555556666666666666555444444555566666666666544 344444 555666666666665
Q ss_pred c-cccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeecccccccccccccc
Q 004993 359 E-QLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSL 436 (720)
Q Consensus 359 ~-~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l 436 (720)
. .+|..+..+++|++|+|++|++.+.+|. ++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 5 4455555666666666666665555554 5556666666666666555566666666666666666655554444322
Q ss_pred C----------------------------------------------------------------------CCCCCcEEe
Q 004993 437 C----------------------------------------------------------------------ELISLQRLY 446 (720)
Q Consensus 437 ~----------------------------------------------------------------------~l~~L~~L~ 446 (720)
. .+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 1 234455555
Q ss_pred ccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccc
Q 004993 447 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK 526 (720)
Q Consensus 447 L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~ 526 (720)
|++|.+.+.+|..++++++|+.|+|++|...+.+|. .+.++++|+.|++++|.++|.+|..+..++.|+.|+
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~--------~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD--------EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG--------GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh--------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 555555555555555555555555555555555554 445555555555555555555555555555555555
Q ss_pred cchhhHHHHHH
Q 004993 527 LDQNELKGIAE 537 (720)
Q Consensus 527 L~~N~l~~~~~ 537 (720)
+++|+++|.+|
T Consensus 711 ls~N~l~g~iP 721 (768)
T 3rgz_A 711 LSNNNLSGPIP 721 (768)
T ss_dssp CCSSEEEEECC
T ss_pred CcCCcccccCC
Confidence 55555555444
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.3e-26 Score=273.75 Aligned_cols=266 Identities=18% Similarity=0.165 Sum_probs=208.5
Q ss_pred EeecCCccceecCchhhCCCC-CccEEEeeCCCCcccccCCccc--ccCceEEEecCCCCC-CCCCCC-CCCCccEEEcc
Q 004993 280 LLDMSKVNEIHLNSSTFKKMP-RLRFLKFHGENKFKISHFEGEA--FTELRYLYWDGYPSK-SLPPVI-RLDTLISLQLR 354 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~-~L~~L~L~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~-~lp~~~-~l~~L~~L~L~ 354 (720)
.++++.+......+..+.+++ +|+.|++++|.+.+..+..... +++|++|++++|.+. .+|..+ ++++|++|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 466777766656666777776 8999999888877655555544 778888888888866 566666 78888888988
Q ss_pred CCCcc-cccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeecccccccccc
Q 004993 355 ESKVE-QLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL 432 (720)
Q Consensus 355 ~n~i~-~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~l 432 (720)
+|.+. .+|..+..+++|++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 88887 6677888888888888888888877776 888888888888888888888888888888888888888888888
Q ss_pred ccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCC---ccE--------------------
Q 004993 433 PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCN---LFS-------------------- 489 (720)
Q Consensus 433 p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~---L~~-------------------- 489 (720)
|.+++.+++|++|+|++|.+.+.+|..+..+++|+.|++++|+..+.+|..... +..
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 888888888888888888888888888888888888888888887777742100 000
Q ss_pred ---------------------------------------EeccCCCccccccCcccccccCCCCCccccccccccccchh
Q 004993 490 ---------------------------------------VGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQN 530 (720)
Q Consensus 490 ---------------------------------------L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N 530 (720)
-.+.++++|+.|++++|.++|.+|..++.++.|+.|+|++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 01344577888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHHH
Q 004993 531 ELKGIAEDALQKIQQ 545 (720)
Q Consensus 531 ~l~~~~~~~~~~l~~ 545 (720)
.++|.+|..+++++.
T Consensus 667 ~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 667 DISGSIPDEVGDLRG 681 (768)
T ss_dssp CCCSCCCGGGGGCTT
T ss_pred ccCCCCChHHhCCCC
Confidence 888888877766655
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.93 E-value=8.2e-27 Score=268.27 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=159.8
Q ss_pred cccchHHHHHhc---CCCeEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCChhHHhhcCCCcEEEcC------CCC
Q 004993 24 PNIGLNFESKRL---TRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVK------ELA 94 (720)
Q Consensus 24 ~~~~~~~i~~~L---~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~------~L~ 94 (720)
.+.+...+++.| .+||+||||||||+.++|+.+. +|||||||||++.++..+....+|+|+ +|+
T Consensus 227 leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS 299 (1221)
T 1vt4_I 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299 (1221)
T ss_dssp HHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCC
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcC
Confidence 344566777765 7899999999999999999863 799999999999999765444467777 999
Q ss_pred HHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCC--CHHHHHHHHHHHhcCCCchHHHHHHHhh
Q 004993 95 DADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSAR--RKEEWESAITKLETVPHMEIQDVLKISY 172 (720)
Q Consensus 95 ~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~--~~~~W~~~l~~L~~~~~~~i~~~l~~sy 172 (720)
.+|||+||+++ ++.. ..++..++ |+|+||||+++|+.|+++ +.++|+.. ....+..+|++||
T Consensus 300 ~eEA~eLF~~~-~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSY 363 (1221)
T 1vt4_I 300 PDEVKSLLLKY-LDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSL 363 (1221)
T ss_dssp HHHHHHHHHHH-HCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHH
Confidence 99999999998 3322 22334444 999999999999999997 78999764 3567999999999
Q ss_pred cCCChhh-hhhhcccccccCCC--CHHHHHHHHHhCCC-CcccchhhhhcccceEEe--CCeEEeeHHHHHHH
Q 004993 173 DGLDYVE-QAMFLDIACYFVGA--NKDFVINYFDASDF-FPEIGLGRLVDKSLITIS--CNKIRMHDLLQDMG 239 (720)
Q Consensus 173 d~L~~~~-k~~fl~~a~f~~~~--~~~~l~~~w~~~g~-~~~~~~~~L~~~~li~~~--~~~~~mHdLl~d~~ 239 (720)
+.||+++ |.||++||+||+++ +.+.++.+|+++|. .++..+++|++++|++.. .++++|||++++++
T Consensus 364 d~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999 99999999999985 56779999999873 245679999999999986 46899999999865
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=6e-26 Score=238.94 Aligned_cols=241 Identities=19% Similarity=0.194 Sum_probs=201.8
Q ss_pred EeecCCcccee--cCchhhCCCCCccEEEeeC-CCCcccccCCcccccCceEEEecCCCCC-CCCCCC-CCCCccEEEcc
Q 004993 280 LLDMSKVNEIH--LNSSTFKKMPRLRFLKFHG-ENKFKISHFEGEAFTELRYLYWDGYPSK-SLPPVI-RLDTLISLQLR 354 (720)
Q Consensus 280 ~l~ls~~~~~~--~~~~~f~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~-~l~~L~~L~L~ 354 (720)
.++++++.... ..+..|.++++|++|++++ |.+.+..+..++.+++|++|++++|.+. .+|..+ ++++|++|+++
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence 45555555444 5567888999999999995 7777666767777999999999999887 677766 78999999999
Q ss_pred CCCcc-cccCCCCCCCCccEEecCCCcCCCCCCC-CcCCc-ccceeecccccccccccccccCCcccceeeccccccccc
Q 004993 355 ESKVE-QLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQAR-NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNR 431 (720)
Q Consensus 355 ~n~i~-~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~-~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~ 431 (720)
+|.+. .+|..+..+++|++|++++|.+.+.+|. +..++ +|+.|++++|.+.+.+|..+..++ |+.|++++|.+.+.
T Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212 (313)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC
T ss_pred CCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc
Confidence 99998 6788888999999999999988767776 88887 899999999988888888888887 99999999988888
Q ss_pred cccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccC
Q 004993 432 LPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAM 511 (720)
Q Consensus 432 lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~ 511 (720)
.|..+..+++|+.|+|++|.+.+.+|. +..+++|++|+|++|.+.+.+|. .+.++++|+.|++++|.+++.
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~--------~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ--------GLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG--------GGGGCTTCCEEECCSSEEEEE
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh--------HHhcCcCCCEEECcCCccccc
Confidence 888888999999999999887766665 78889999999999988777887 678889999999999999988
Q ss_pred CCCCccccccccccccchhh
Q 004993 512 SPHNDQYFNLSDCLKLDQNE 531 (720)
Q Consensus 512 ~~~~l~~l~~L~~L~L~~N~ 531 (720)
+|.. ..++.|+.+++++|+
T Consensus 284 ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSS
T ss_pred CCCC-ccccccChHHhcCCC
Confidence 8876 788888999998885
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.9e-25 Score=236.56 Aligned_cols=225 Identities=24% Similarity=0.274 Sum_probs=203.8
Q ss_pred CCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccEEec
Q 004993 298 KMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDL 376 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~L 376 (720)
..++++.|++++|.+.. .+...+.+++|++|++++|.+..+|..+ .+++|++|+|++|.++.+|..+..+++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 45789999999999875 5555666999999999999999999877 899999999999999999999999999999999
Q ss_pred CCCcCCCCCCC-Cc---------CCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEe
Q 004993 377 SYSRQLKKLPD-LS---------QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 446 (720)
Q Consensus 377 s~n~~~~~~p~-l~---------~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~ 446 (720)
++|...+.+|. +. .+++|++|++++|.+. .+|..++.+++|+.|++++|.+. .+|..++.+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 99988888886 54 3999999999999776 88999999999999999999765 5777899999999999
Q ss_pred ccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccc
Q 004993 447 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK 526 (720)
Q Consensus 447 L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~ 526 (720)
|++|...+.+|..++.+++|+.|+|++|+..+.+|. .+.++++|+.|++++|.+.+.+|..+..++.++.++
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL--------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT--------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch--------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 999999999999999999999999999999999997 788999999999999999999999999999999999
Q ss_pred cchhhHH
Q 004993 527 LDQNELK 533 (720)
Q Consensus 527 L~~N~l~ 533 (720)
+..|.+.
T Consensus 308 l~~~~~~ 314 (328)
T 4fcg_A 308 VPPHLQA 314 (328)
T ss_dssp CCGGGSC
T ss_pred CCHHHHH
Confidence 9988553
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=2e-25 Score=234.93 Aligned_cols=235 Identities=20% Similarity=0.199 Sum_probs=211.1
Q ss_pred CCccEEEeeCCCCcc--cccCCcccccCceEEEecC-CCCC-CCCCCC-CCCCccEEEccCCCcc-cccCCCCCCCCccE
Q 004993 300 PRLRFLKFHGENKFK--ISHFEGEAFTELRYLYWDG-YPSK-SLPPVI-RLDTLISLQLRESKVE-QLWDGVPNLVNLKE 373 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~~-~l~~L~~L~L~~n~i~-~l~~~~~~L~~L~~ 373 (720)
.+++.|++++|.+.+ ..+..+..+++|++|++++ |.+. .+|..+ ++++|++|++++|++. .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999999987 5666777799999999995 7644 778777 8999999999999998 78889999999999
Q ss_pred EecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCc-ccceeeccccccccccccccCCCCCCcEEeccCCC
Q 004993 374 IDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLS-KLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCS 451 (720)
Q Consensus 374 L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~ 451 (720)
|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999998878886 99999999999999999889999999998 999999999999889999998887 9999999999
Q ss_pred CCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhh
Q 004993 452 NLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNE 531 (720)
Q Consensus 452 ~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 531 (720)
+.+..|..+..+++|+.|+|++|.....+| .+..+++|+.|++++|.+++..|..+..++.|+.|++++|.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG---------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGG---------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecC---------cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 888999999999999999999998876665 35678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004993 532 LKGIAEDALQKIQQ 545 (720)
Q Consensus 532 l~~~~~~~~~~l~~ 545 (720)
++|.+|.. ..++.
T Consensus 280 l~~~ip~~-~~l~~ 292 (313)
T 1ogq_A 280 LCGEIPQG-GNLQR 292 (313)
T ss_dssp EEEECCCS-TTGGG
T ss_pred ccccCCCC-ccccc
Confidence 99877764 33433
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.1e-24 Score=241.70 Aligned_cols=134 Identities=19% Similarity=0.195 Sum_probs=93.8
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccc-cCCcccccCceEEEecCCCCCCC-CCCC-CCCCccEEEccCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKIS-HFEGEAFTELRYLYWDGYPSKSL-PPVI-RLDTLISLQLRES 356 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~L~~n 356 (720)
.+|++++....+.+..|.++++|++|++++|.+.... +..+..+++|++|++++|.+..+ |..+ ++++|++|++++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence 4667777666777777888888888888887765322 34455678888888888877766 4444 6788888888888
Q ss_pred Cccc-ccCC--CCCCCCccEEecCCCcCCCCCCC--CcCCcccceeeccccccccccccccc
Q 004993 357 KVEQ-LWDG--VPNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQ 413 (720)
Q Consensus 357 ~i~~-l~~~--~~~L~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~~~~p~~l~ 413 (720)
+++. ++.. +..+++|++|+|++|.+....|. +..+++|++|++++|.+.+..+..+.
T Consensus 114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 7774 3333 77778888888888877666565 67777777777777776655554443
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=240.99 Aligned_cols=262 Identities=20% Similarity=0.214 Sum_probs=177.6
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESK 357 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~ 357 (720)
.+|++++....+.+..|.++++|+.|+|++|.+....+..+..+++|++|++++|.++.+|... ++++|++|+|++|.
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence 4778888877888888999999999999999888876777777899999999999988888754 78899999999998
Q ss_pred cccc-cCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccc
Q 004993 358 VEQL-WDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS 435 (720)
Q Consensus 358 i~~l-~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~ 435 (720)
+..+ +..+..+++|++|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 195 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC
T ss_pred cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh
Confidence 8866 45688888899999988887666564 788888888888888766555555677777777777777665555555
Q ss_pred cCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCC----CCCCccEEe-------------ccCCCcc
Q 004993 436 LCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE----LPCNLFSVG-------------VRRCTSL 498 (720)
Q Consensus 436 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~----lp~~L~~L~-------------~~~~~~L 498 (720)
+..+++|+.|++++|...+.+|.......+|+.|++++|... .+|. -.++|+.|+ +.++++|
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred cccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccC
Confidence 666666666666665555555444433344444444444322 2220 112233332 3344566
Q ss_pred ccccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHH
Q 004993 499 EALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQK 542 (720)
Q Consensus 499 ~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 542 (720)
+.|++++|.+++..|..+..+++|+.|+|++|.+++..+..+..
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 66666666666665655666666666666666655544443333
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=7.1e-24 Score=235.13 Aligned_cols=137 Identities=15% Similarity=0.006 Sum_probs=85.5
Q ss_pred ccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEccc
Q 004993 393 NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLK 472 (720)
Q Consensus 393 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 472 (720)
+|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|+.|+|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 34444444444444445555666666666666665555555556666666666666665544445556666666666666
Q ss_pred CCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHHHHH
Q 004993 473 NCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAE 537 (720)
Q Consensus 473 ~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 537 (720)
+|......|. .+.++++|+.|++++|.+++..+..+..++.|+.|++++|++++..|
T Consensus 356 ~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 356 YNHIRALGDQ--------SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCCEECTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcccccChh--------hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6655444444 45666777888888887777666666777777888888887766554
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.1e-24 Score=230.78 Aligned_cols=212 Identities=20% Similarity=0.241 Sum_probs=194.9
Q ss_pred ccCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecc
Q 004993 323 FTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLK 400 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~ 400 (720)
..+++.|++++|.++.+|..+ .+++|++|+|++|.++.+|..+..+++|++|+|++|.+. .+|. +..+++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 578999999999999999987 899999999999999999999999999999999999877 6665 9999999999999
Q ss_pred cccccccccccccC---------CcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcc
Q 004993 401 ACSSLVETHSSIQY---------LSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHL 471 (720)
Q Consensus 401 ~~~~~~~~p~~l~~---------l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 471 (720)
+|...+.+|..+.. +++|+.|++++|.+. .+|..++++++|++|+|++|.+. .+|..+..+++|+.|+|
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEEC
Confidence 99999999987765 999999999999765 88999999999999999999765 57778999999999999
Q ss_pred cCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 472 KNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 472 ~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
++|+..+.+|. .+.++++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+++++.
T Consensus 237 s~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 237 RGCTALRNYPP--------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp TTCTTCCBCCC--------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred cCCcchhhhHH--------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 99999999987 7888999999999999999999999999999999999999998888887776665
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=6e-24 Score=222.87 Aligned_cols=244 Identities=19% Similarity=0.102 Sum_probs=205.5
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCC---CCCC-CCCCccEEEccCC
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSL---PPVI-RLDTLISLQLRES 356 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~~-~l~~L~~L~L~~n 356 (720)
++.+......++... .++|+.|++++|.+.......+..+++|++|++++|.+..+ |..+ .+++|++|++++|
T Consensus 12 l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 444444444444322 36899999999998875554567799999999999998766 3333 7899999999999
Q ss_pred CcccccCCCCCCCCccEEecCCCcCCCCCC--CCcCCcccceeecccccccccccccccCCcccceeecccccccc-ccc
Q 004993 357 KVEQLWDGVPNLVNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLP 433 (720)
Q Consensus 357 ~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~lp 433 (720)
.+..+|..+..+++|++|++++|.+....+ .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .+|
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 999999889999999999999998776654 48899999999999999888888889999999999999998776 688
Q ss_pred cccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCC
Q 004993 434 SSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP 513 (720)
Q Consensus 434 ~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~ 513 (720)
..+..+++|++|++++|.+.+..|..+..+++|+.|++++|......+. .+.++++|+.|++++|.+++..|
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--------PYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG--------GGTTCTTCCEEECTTSCCCBCSS
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh--------hccCcccCCEeECCCCCCcccCH
Confidence 8899999999999999988777788999999999999999976554333 46788999999999999999999
Q ss_pred CCccccc-cccccccchhhHHHH
Q 004993 514 HNDQYFN-LSDCLKLDQNELKGI 535 (720)
Q Consensus 514 ~~l~~l~-~L~~L~L~~N~l~~~ 535 (720)
..+..++ .|+.|++++|.+++.
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEECS
T ss_pred HHHHhhhccCCEEEccCCCeecc
Confidence 8888884 899999999998753
No 14
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.90 E-value=6e-24 Score=243.82 Aligned_cols=209 Identities=23% Similarity=0.260 Sum_probs=172.1
Q ss_pred cccccchHHHHHhcCC--CeEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCChhHHhhcCCCcEEEc---CCCCHH
Q 004993 22 IIPNIGLNFESKRLTR--KKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEV---KELADA 96 (720)
Q Consensus 22 ~~~~~~~~~i~~~L~~--kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l---~~L~~~ 96 (720)
.+.+.....+++.|.+ +|+||||||||+..+|+. +++||+||||||++.++..++ ...|++ ++|+.+
T Consensus 218 ~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ 289 (591)
T 1z6t_A 218 LNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKE 289 (591)
T ss_dssp CSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHH
T ss_pred CCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHH
Confidence 3445667778887766 799999999999887764 367999999999999987754 445666 589999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCCCHHHHHHHHHHHhcCC-----------CchHH
Q 004993 97 DALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLETVP-----------HMEIQ 165 (720)
Q Consensus 97 es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~-----------~~~i~ 165 (720)
||++||...++.. .....+.+.+|+++|+|+||||+.+|+.|+... .+|+..++.+.... ...+.
T Consensus 290 ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~ 365 (591)
T 1z6t_A 290 KGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALD 365 (591)
T ss_dssp HHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHH
T ss_pred HHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHH
Confidence 9999999998752 233356789999999999999999999998864 37999999887543 24688
Q ss_pred HHHHHhhcCCChhhhhhhcccccccCC--CCHHHHHHHHHhCCCCcccchhhhhcccceEEe-C---CeEEeeHHHHHHH
Q 004993 166 DVLKISYDGLDYVEQAMFLDIACYFVG--ANKDFVINYFDASDFFPEIGLGRLVDKSLITIS-C---NKIRMHDLLQDMG 239 (720)
Q Consensus 166 ~~l~~syd~L~~~~k~~fl~~a~f~~~--~~~~~l~~~w~~~g~~~~~~~~~L~~~~li~~~-~---~~~~mHdLl~d~~ 239 (720)
.++..||+.||++.|.||+++|+||.| ++.+.+..+|.+.+...+..+..|++++|++.. + .+++||+++++++
T Consensus 366 ~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~ 445 (591)
T 1z6t_A 366 EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFL 445 (591)
T ss_dssp HHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHH
Confidence 999999999999999999999999987 466778899977644456679999999999876 2 2799999999999
Q ss_pred HHH
Q 004993 240 RKI 242 (720)
Q Consensus 240 ~~i 242 (720)
+..
T Consensus 446 ~~~ 448 (591)
T 1z6t_A 446 TEK 448 (591)
T ss_dssp HHH
T ss_pred Hhh
Confidence 877
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=3.2e-23 Score=220.07 Aligned_cols=240 Identities=18% Similarity=0.178 Sum_probs=203.3
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcc
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVE 359 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~ 359 (720)
.++++++....+.+..|.++++|+.|++++|.+....+..+..+++|++|++++|.++.+|..+. ++|++|++++|.+.
T Consensus 58 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~ 136 (332)
T 2ft3_A 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIR 136 (332)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCC
T ss_pred EEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccC
Confidence 47888888778888899999999999999999988767777789999999999999999998776 89999999999999
Q ss_pred cccCC-CCCCCCccEEecCCCcCCC--CCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccc
Q 004993 360 QLWDG-VPNLVNLKEIDLSYSRQLK--KLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS 435 (720)
Q Consensus 360 ~l~~~-~~~L~~L~~L~Ls~n~~~~--~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~ 435 (720)
.++.. +..+++|++|++++|.+.. ..|. +..+ +|+.|++++|.+.. +|..+. ++|+.|++++|.+.+..|..
T Consensus 137 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~ 212 (332)
T 2ft3_A 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELED 212 (332)
T ss_dssp CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTS
T ss_pred ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHH
Confidence 88764 8899999999999998753 4444 6677 99999999987654 666554 78999999999887777788
Q ss_pred cCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCC
Q 004993 436 LCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHN 515 (720)
Q Consensus 436 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~ 515 (720)
+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|+.. .+|. .+.++++|+.|++++|.+++..+..
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~--------~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA--------GLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT--------TGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh--------hhhcCccCCEEECCCCCCCccChhH
Confidence 999999999999999877777778999999999999998654 6776 5778899999999999998877666
Q ss_pred ccc------cccccccccchhhHH
Q 004993 516 DQY------FNLSDCLKLDQNELK 533 (720)
Q Consensus 516 l~~------l~~L~~L~L~~N~l~ 533 (720)
+.. ...++.+++++|+++
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ccccccccccccccceEeecCccc
Confidence 544 356788899999775
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=5.2e-23 Score=232.26 Aligned_cols=101 Identities=19% Similarity=0.131 Sum_probs=77.7
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcc
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVE 359 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~ 359 (720)
.++++++....+.+..|.++++|++|++++|.+....+..+..+++|++|++++|.++.+|.. .+++|++|++++|.++
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~ 103 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFD 103 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCS
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccc
Confidence 466777776677777888888888888888887776666677788888888888888888877 7888888888888887
Q ss_pred c--ccCCCCCCCCccEEecCCCcC
Q 004993 360 Q--LWDGVPNLVNLKEIDLSYSRQ 381 (720)
Q Consensus 360 ~--l~~~~~~L~~L~~L~Ls~n~~ 381 (720)
. +|..++.+++|++|++++|.+
T Consensus 104 ~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 104 ALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp SCCCCGGGGGCTTCCEEEEEESSC
T ss_pred cccchhhhccCCcceEEEecCccc
Confidence 5 456777777777777777654
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=3.3e-23 Score=238.39 Aligned_cols=262 Identities=19% Similarity=0.148 Sum_probs=209.9
Q ss_pred EEEEeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCC-CC-CCCCccEEEcc
Q 004993 277 EGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPP-VI-RLDTLISLQLR 354 (720)
Q Consensus 277 ~~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~L~ 354 (720)
.-..++++++....+.+..|.++++|+.|++++|.+.. .+.....+++|++|++++|.+..++. .+ .+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 34567788888788888889999999999999998875 45556668999999999999888754 44 78999999999
Q ss_pred CCCcc-cccCC-CCCCCCccEEecCCCcCCCCC--CC-CcCCcccceeecccccccccccccccCCcccceeeccccccc
Q 004993 355 ESKVE-QLWDG-VPNLVNLKEIDLSYSRQLKKL--PD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNL 429 (720)
Q Consensus 355 ~n~i~-~l~~~-~~~L~~L~~L~Ls~n~~~~~~--p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~ 429 (720)
+|.+. .+|.. +..+++|++|++++|.+.... |. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 99887 66644 888999999999999876653 43 888999999999999888878888899999999999998877
Q ss_pred cccccc-cCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCccccc
Q 004993 430 NRLPSS-LCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLF 508 (720)
Q Consensus 430 ~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l 508 (720)
+..|.. +..+++|+.|++++|.+.+..|..+..+++|++|++++|+..+.....+. .+.++++|+.|++++|.+
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN-----SLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC-----GGGGCTTCCEEECTTSCC
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccch-----hhccCCCccEEECCCCcc
Confidence 665543 78899999999999988888888888999999999999877652211111 466778888888888888
Q ss_pred ccCCCCCccccccccccccchhhHHHHHHHHHHHHH
Q 004993 509 SAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQ 544 (720)
Q Consensus 509 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 544 (720)
++..|..+..++.|+.|++++|.+++..|..+.+++
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 888888888888888888888888877666655443
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=4.7e-23 Score=237.16 Aligned_cols=256 Identities=21% Similarity=0.195 Sum_probs=211.1
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCC-CCCCC-C-CCCCccEEEccCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSK-SLPPV-I-RLDTLISLQLRES 356 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~-~-~l~~L~~L~L~~n 356 (720)
.++++++....+ +..+.++++|+.|++++|.+....+..+..+++|++|++++|.+. .+|.. + .+++|++|++++|
T Consensus 282 ~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 282 ELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp EEECTTSCCSCC-CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred EEeccCCccCCC-ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 456666654444 446788999999999999988877777778999999999999865 66654 3 7899999999999
Q ss_pred Ccccc---cCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccccccccccc-ccCCcccceeeccccccccc
Q 004993 357 KVEQL---WDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSS-IQYLSKLVTLDMRLCKNLNR 431 (720)
Q Consensus 357 ~i~~l---~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~L~~n~~~~~ 431 (720)
.+..+ +..+..+++|++|++++|.+....|. +..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+.
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 440 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence 99866 56788999999999999987777665 888999999999999887766544 88899999999999988888
Q ss_pred cccccCCCCCCcEEeccCCCCCCc---cchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCccccc
Q 004993 432 LPSSLCELISLQRLYLSGCSNLRR---IPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLF 508 (720)
Q Consensus 432 lp~~l~~l~~L~~L~L~~n~~~~~---lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l 508 (720)
.|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|...+..|. .+.++++|+.|++++|.+
T Consensus 441 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH--------AFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSCC
T ss_pred CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh--------hhccccCCCEEECCCCcc
Confidence 888888999999999999987652 235688899999999999987766666 677888999999999999
Q ss_pred ccCCCCCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 509 SAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 509 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
++..|..+..++.| .|++++|.+++..|..+..++.
T Consensus 513 ~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 513 TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp CGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred CcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence 88888888888888 8999999888887777777665
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2.1e-22 Score=213.55 Aligned_cols=241 Identities=20% Similarity=0.172 Sum_probs=191.8
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcc
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVE 359 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~ 359 (720)
.++++++....+.+..|.++++|++|++++|.+....+..+..+++|++|++++|.++.+|..+. ++|++|++++|.+.
T Consensus 56 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEIT 134 (330)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCC
T ss_pred EEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCccc
Confidence 47778877777777788999999999999988887667777778899999999999888887664 78999999999988
Q ss_pred cccC-CCCCCCCccEEecCCCcCCC--CCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccc
Q 004993 360 QLWD-GVPNLVNLKEIDLSYSRQLK--KLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS 435 (720)
Q Consensus 360 ~l~~-~~~~L~~L~~L~Ls~n~~~~--~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~ 435 (720)
.++. .+..+++|++|++++|.+.. ..+. +..+++|+.|++++|.+. .+|..+. ++|+.|++++|.+.+..|..
T Consensus 135 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~ 211 (330)
T 1xku_A 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAAS 211 (330)
T ss_dssp BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGG
T ss_pred ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHH
Confidence 7764 47888999999999887643 3444 788899999999988654 4565543 78999999988877777788
Q ss_pred cCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCC
Q 004993 436 LCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHN 515 (720)
Q Consensus 436 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~ 515 (720)
+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|+.. .+|. .+.++++|+.|++++|.+++..+..
T Consensus 212 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~--------~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG--------GLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT--------TTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh--------hhccCCCcCEEECCCCcCCccChhh
Confidence 888999999999998877666667888899999999998654 6665 5677888999999999888777665
Q ss_pred ccc------cccccccccchhhHH
Q 004993 516 DQY------FNLSDCLKLDQNELK 533 (720)
Q Consensus 516 l~~------l~~L~~L~L~~N~l~ 533 (720)
+.. ...+..+++++|.+.
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cCCcccccccccccceEeecCccc
Confidence 533 356777888888764
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-22 Score=233.32 Aligned_cols=249 Identities=16% Similarity=0.140 Sum_probs=136.9
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCCc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESKV 358 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~i 358 (720)
++++++....+++..|.++++|++|++++|.+....+..++.+++|++|++++|.+..+|+.. ++++|++|+|++|.+
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 334444444455555556666666666666555544445555666666666666655555432 556666666666666
Q ss_pred ccccCC-CCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccC----------------------
Q 004993 359 EQLWDG-VPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQY---------------------- 414 (720)
Q Consensus 359 ~~l~~~-~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~---------------------- 414 (720)
+.+|.. +..+++|++|+|++|.+....|. +..+++|+.|++++|.+.+..+..+..
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~ 215 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEE 215 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSE
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhhe
Confidence 655544 35566666666666655554443 555666666666655443321111100
Q ss_pred ---------------CcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCc
Q 004993 415 ---------------LSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLS 479 (720)
Q Consensus 415 ---------------l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~ 479 (720)
.++|+.|+|++|.+.+ +..++.+++|+.|+|++|.+.+..|..++.+++|+.|+|++|....
T Consensus 216 L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 292 (597)
T 3oja_B 216 LDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA- 292 (597)
T ss_dssp EECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-
T ss_pred eeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-
Confidence 1123334444433322 2345556666666666666555556666666666666666654432
Q ss_pred CCCC---CCCccEEecc------------CCCccccccCcccccccCCCCCccccccccccccchhhHHHH
Q 004993 480 LPEL---PCNLFSVGVR------------RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI 535 (720)
Q Consensus 480 lp~l---p~~L~~L~~~------------~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 535 (720)
+|.. .++|+.|+++ .+++|+.|++++|.+++.. +..++.|+.|++++|++++.
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 3321 2344444433 3467778888888776653 44677778888888877754
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=6.2e-23 Score=229.08 Aligned_cols=255 Identities=16% Similarity=0.111 Sum_probs=185.7
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESK 357 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~ 357 (720)
.++++++....+.+..|.++++|+.|++++|.+.......+..+++|++|++++|.+..++.. + .+++|++|++++|.
T Consensus 60 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred EEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence 466677766677778888888888888888887765555556688888888888887776543 3 78888888888888
Q ss_pred ccccc-CCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccc
Q 004993 358 VEQLW-DGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS 435 (720)
Q Consensus 358 i~~l~-~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~ 435 (720)
+..++ ..+..+++|++|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|+.|++++|...+.+|..
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 87664 5677888888888888876554443 777788888888887776666667777778888888777777766666
Q ss_pred cCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCC---CCCccEEe-------------ccCCCccc
Q 004993 436 LCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL---PCNLFSVG-------------VRRCTSLE 499 (720)
Q Consensus 436 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l---p~~L~~L~-------------~~~~~~L~ 499 (720)
.....+|+.|+|++|.+.+..+..+..+++|+.|+|++|......+.. .++|+.|. +.++++|+
T Consensus 220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 555566777777766544333345666667777777666544332221 23455554 45678999
Q ss_pred cccCcccccccCCCCCccccccccccccchhhHHH
Q 004993 500 ALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 534 (720)
Q Consensus 500 ~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 534 (720)
.|++++|.+++..+..+..+++|+.|++++|+++.
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred EEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 99999999999888888899999999999998864
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.7e-22 Score=219.51 Aligned_cols=242 Identities=17% Similarity=0.136 Sum_probs=124.4
Q ss_pred ceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCCcccccCC-
Q 004993 288 EIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESKVEQLWDG- 364 (720)
Q Consensus 288 ~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~i~~l~~~- 364 (720)
...+++..|..+++|++|++++|.+....+..+..+++|++|++++|.+..+|... ++++|++|++++|+++.+|..
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 136 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH
Confidence 33344444445555555555555444433333444455555555555544443332 445555555555555544433
Q ss_pred CCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccc-------------------------------
Q 004993 365 VPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSI------------------------------- 412 (720)
Q Consensus 365 ~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l------------------------------- 412 (720)
+..+++|++|++++|.+....|. +..+++|++|++++|.+.......+
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 216 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC
T ss_pred hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCe
Confidence 24455555555555544433333 4444455555554443322110000
Q ss_pred ------cCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCC---C
Q 004993 413 ------QYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE---L 483 (720)
Q Consensus 413 ------~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~---l 483 (720)
...++|+.|++++|.+.+. ..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|+... +|. .
T Consensus 217 l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 293 (390)
T 3o6n_A 217 INVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP 293 (390)
T ss_dssp CCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSC
T ss_pred eeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCC
Confidence 0112344444444433221 245556666666666666555556666666666666666654332 232 1
Q ss_pred CCCccEEecc------------CCCccccccCcccccccCCCCCccccccccccccchhhHHHH
Q 004993 484 PCNLFSVGVR------------RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI 535 (720)
Q Consensus 484 p~~L~~L~~~------------~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 535 (720)
.++|+.|+++ .+++|+.|++++|.++... +..++.|+.|++++|+++..
T Consensus 294 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence 2345555444 3478888888888887653 45778888899999988764
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=2.9e-22 Score=222.05 Aligned_cols=224 Identities=20% Similarity=0.164 Sum_probs=191.9
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCCcccccCC-CCCCCCccEEec
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESKVEQLWDG-VPNLVNLKEIDL 376 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~i~~l~~~-~~~L~~L~~L~L 376 (720)
++|+.|+|++|.+....+..+..+++|++|++++|.+..++.. + ++++|++|+|++|+++.+|.. +..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 6899999999999887777778899999999999998888754 4 799999999999999988754 888999999999
Q ss_pred CCCcCCCCCCC-CcCCcccceeecccccccccccc-cccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCC
Q 004993 377 SYSRQLKKLPD-LSQARNLENLLLKACSSLVETHS-SIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLR 454 (720)
Q Consensus 377 s~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~ 454 (720)
++|.+....+. +..+++|+.|++++|...+.++. .+..+++|+.|+|++|.+. .+| .+..+++|+.|+|++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcc
Confidence 99987655554 88999999999999777777665 5889999999999998654 455 47789999999999998888
Q ss_pred ccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHH
Q 004993 455 RIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELK 533 (720)
Q Consensus 455 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 533 (720)
..|..+.++++|+.|+|++|......|. .+.++++|+.|++++|.+++..+..+..+++|+.|+|++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERN--------AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHH--------HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 8888999999999999999987766665 6788899999999999999888888888999999999999764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=8.6e-23 Score=232.75 Aligned_cols=250 Identities=17% Similarity=0.104 Sum_probs=195.7
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcc
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVE 359 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~ 359 (720)
.++++++....+.+..|.++++|++|++++|.+....+..+..+++|++|++++|.++.+|.. .+++|++|++++|+++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~ 134 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFD 134 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCS
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCcc
Confidence 578888888888889999999999999999999987777788899999999999999999988 8999999999999999
Q ss_pred ccc--CCCCCCCCccEEecCCCcCCCCCCCCcCCccc--ceeecccccc--cccccccccCCc-----------------
Q 004993 360 QLW--DGVPNLVNLKEIDLSYSRQLKKLPDLSQARNL--ENLLLKACSS--LVETHSSIQYLS----------------- 416 (720)
Q Consensus 360 ~l~--~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L--~~L~L~~~~~--~~~~p~~l~~l~----------------- 416 (720)
.++ ..+.++++|++|++++|.+.. ..+..+++| +.|++++|.+ .+..|..+..+.
T Consensus 135 ~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 212 (562)
T 3a79_B 135 VLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212 (562)
T ss_dssp BCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCC
T ss_pred ccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhh
Confidence 765 689999999999999998754 235555555 8888888876 444444443322
Q ss_pred ----------------------------------------------------------------ccceeecccccccccc
Q 004993 417 ----------------------------------------------------------------KLVTLDMRLCKNLNRL 432 (720)
Q Consensus 417 ----------------------------------------------------------------~L~~L~L~~n~~~~~l 432 (720)
+|++|++++|.+.+.+
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i 292 (562)
T 3a79_B 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292 (562)
T ss_dssp CEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC
T ss_pred hhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc
Confidence 5667777777666666
Q ss_pred cccc-----------------------------------------------------CCCCCCcEEeccCCCCCCccchh
Q 004993 433 PSSL-----------------------------------------------------CELISLQRLYLSGCSNLRRIPES 459 (720)
Q Consensus 433 p~~l-----------------------------------------------------~~l~~L~~L~L~~n~~~~~lp~~ 459 (720)
|..+ ..+++|++|++++|.+.+.+|..
T Consensus 293 p~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp CCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred cchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhh
Confidence 6544 56778888888888877777888
Q ss_pred ccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCccccccc-CCCCCccccccccccccchhhHHHHHHH
Q 004993 460 IINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA-MSPHNDQYFNLSDCLKLDQNELKGIAED 538 (720)
Q Consensus 460 l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 538 (720)
+.++++|+.|++++|+... ++..|. .+.++++|+.|++++|.+++ ..+..+..++.|+.|++++|.+++..|.
T Consensus 373 ~~~l~~L~~L~L~~N~l~~-~~~~~~-----~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 446 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKN-FFKVAL-----MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446 (562)
T ss_dssp CCSCSSCCEEECCSSCCCB-TTHHHH-----TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS
T ss_pred hcccCCCCEEECCCCCcCC-cccchh-----hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh
Confidence 8888888888888875443 332111 35677899999999999988 4444577788899999999988765443
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=9.3e-24 Score=243.89 Aligned_cols=256 Identities=14% Similarity=0.126 Sum_probs=188.9
Q ss_pred EEEEeecCCccceecCchhhCCCCCccEEEeeCCCC--------------------------------------------
Q 004993 277 EGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENK-------------------------------------------- 312 (720)
Q Consensus 277 ~~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~-------------------------------------------- 312 (720)
+...++++.+...+..+..++++++|++|+|++|.+
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 445677888777777778999999999999998853
Q ss_pred ----------------------------------cccccCCcccccCceEEEecCCCCCC------------------CC
Q 004993 313 ----------------------------------FKISHFEGEAFTELRYLYWDGYPSKS------------------LP 340 (720)
Q Consensus 313 ----------------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~------------------lp 340 (720)
.+ .|..++.+++|++|++++|.+.. +|
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 11 23334557888888888888777 77
Q ss_pred CCCC---CCCccEEEccCCCcc-cccCCCCCCCCccEEecCCCc-CCC-CCCC-CcCC------cccceeeccccccccc
Q 004993 341 PVIR---LDTLISLQLRESKVE-QLWDGVPNLVNLKEIDLSYSR-QLK-KLPD-LSQA------RNLENLLLKACSSLVE 407 (720)
Q Consensus 341 ~~~~---l~~L~~L~L~~n~i~-~l~~~~~~L~~L~~L~Ls~n~-~~~-~~p~-l~~l------~~L~~L~L~~~~~~~~ 407 (720)
..+. +++|++|++++|.+. .+|..+.++++|++|++++|+ +.+ .+|. ++.+ ++|++|++++|.+. .
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c
Confidence 7654 788888888888765 677788888888888888887 555 5664 5554 78888888888766 7
Q ss_pred ccc--cccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCC-CCEEcccCCcCcCcCCCCC
Q 004993 408 THS--SIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSK-LELLHLKNCSKLLSLPELP 484 (720)
Q Consensus 408 ~p~--~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~-L~~L~L~~~~~l~~lp~lp 484 (720)
+|. .++.+++|+.|++++|.+.+.+| .++.+++|++|+|++|.+. .+|..+..+++ |+.|++++|... .+|.
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-- 394 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN-- 394 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS--
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch--
Confidence 777 78888888888888887777788 7778888888888887654 77877888888 888888887655 6665
Q ss_pred CCccEEeccC--CCccccccCcccccccCCCCCcc-------ccccccccccchhhHHHHHHHHHHHHHH
Q 004993 485 CNLFSVGVRR--CTSLEALSSFSFLFSAMSPHNDQ-------YFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 485 ~~L~~L~~~~--~~~L~~L~l~~N~l~~~~~~~l~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
.+.. +++|+.|++++|.+++..|..+. .+.+|+.|++++|.+++..+..+..++.
T Consensus 395 ------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 395 ------IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458 (636)
T ss_dssp ------CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred ------hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence 2333 33778888888888877777666 6667788888888777544444443433
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=3.1e-22 Score=220.99 Aligned_cols=224 Identities=19% Similarity=0.174 Sum_probs=189.9
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCCcccccC-CCCCCCCccEEec
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESKVEQLWD-GVPNLVNLKEIDL 376 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~i~~l~~-~~~~L~~L~~L~L 376 (720)
++++.|+|++|.+....+..+..+++|++|++++|.+..++.. + ++++|++|+|++|+++.++. .+..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 6789999999998887777777899999999999998888754 3 78999999999999998875 5888999999999
Q ss_pred CCCcCCCCCCC-CcCCcccceeecccccccccccc-cccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCC
Q 004993 377 SYSRQLKKLPD-LSQARNLENLLLKACSSLVETHS-SIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLR 454 (720)
Q Consensus 377 s~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~ 454 (720)
++|.+....+. +..+++|+.|++++|...+.++. .+..+++|+.|++++|.+ ..+| .+..+++|+.|+|++|.+.+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-cccc-ccCCCcccCEEECCCCccCc
Confidence 99987655554 88999999999998777766664 688899999999998864 4666 47789999999999998877
Q ss_pred ccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHH
Q 004993 455 RIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELK 533 (720)
Q Consensus 455 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 533 (720)
..|..+.++++|+.|+|++|.+....+. .+.++++|+.|++++|.+++..+..+..++.|+.|+|++|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERN--------AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTT--------SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChh--------hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 7788899999999999999877665555 6778899999999999999888888888999999999999764
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.5e-22 Score=212.20 Aligned_cols=224 Identities=20% Similarity=0.158 Sum_probs=195.4
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccc--cCCcccccCceEEEecCCCCCCCCCCC-CCCCccEEEccCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKIS--HFEGEAFTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRES 356 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n 356 (720)
.++++++....++...|.++++|+.|++++|.+.... +.....+++|++|++++|.+..+|..+ .+++|++|++++|
T Consensus 32 ~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred EEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence 4677777777788888999999999999999887533 334445899999999999999998877 8999999999999
Q ss_pred CcccccC--CCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccc-cccccccCCcccceeecccccccccc
Q 004993 357 KVEQLWD--GVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLV-ETHSSIQYLSKLVTLDMRLCKNLNRL 432 (720)
Q Consensus 357 ~i~~l~~--~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~l 432 (720)
+++.++. .+..+++|++|++++|.+....+. +..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..
T Consensus 112 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence 9998874 789999999999999998777776 8899999999999998876 57889999999999999999888877
Q ss_pred ccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCC-CccccccCcccccccC
Q 004993 433 PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC-TSLEALSSFSFLFSAM 511 (720)
Q Consensus 433 p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~-~~L~~L~l~~N~l~~~ 511 (720)
|..+..+++|++|+|++|.+.+..+..+..+++|+.|++++|+..+..|. .+..+ ++|+.|++++|.+++.
T Consensus 192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ--------ELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS--------SCCCCCTTCCEEECTTCCEECS
T ss_pred HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH--------HHHhhhccCCEEEccCCCeecc
Confidence 88999999999999999987776677889999999999999988877776 56666 4899999999998754
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1e-21 Score=208.18 Aligned_cols=241 Identities=16% Similarity=0.135 Sum_probs=199.8
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCC-CCCC-CCCCccEEEccCCCc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSL-PPVI-RLDTLISLQLRESKV 358 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~L~~n~i 358 (720)
++++......++... .++|+.|++++|.+....+..+..+++|++|++++|.+..+ |..+ .+++|++|++++|.+
T Consensus 36 l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 36 VQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp EECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence 455544443433322 36899999999999886666777899999999999999888 5555 899999999999999
Q ss_pred ccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccc--cccccccCCcccceeeccccccccccccc
Q 004993 359 EQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSS 435 (720)
Q Consensus 359 ~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~n~~~~~lp~~ 435 (720)
+.+|..+. ++|++|++++|.+....+. +..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+ ..+|..
T Consensus 113 ~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~ 189 (330)
T 1xku_A 113 KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQG 189 (330)
T ss_dssp SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSS
T ss_pred CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCcc
Confidence 99988765 7999999999987766555 8899999999999998753 5677899999999999999864 457765
Q ss_pred cCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCC
Q 004993 436 LCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHN 515 (720)
Q Consensus 436 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~ 515 (720)
+. ++|++|++++|.+.+..|..+..+++|+.|++++|......+. .+.++++|+.|++++|.++ .+|..
T Consensus 190 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~L~~N~l~-~lp~~ 258 (330)
T 1xku_A 190 LP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG--------SLANTPHLRELHLNNNKLV-KVPGG 258 (330)
T ss_dssp CC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT--------TGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred cc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh--------hccCCCCCCEEECCCCcCc-cCChh
Confidence 53 8999999999988777788999999999999999987665554 5778899999999999998 56777
Q ss_pred ccccccccccccchhhHHHHHHH
Q 004993 516 DQYFNLSDCLKLDQNELKGIAED 538 (720)
Q Consensus 516 l~~l~~L~~L~L~~N~l~~~~~~ 538 (720)
+..++.|+.|++++|.+++..+.
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTT
T ss_pred hccCCCcCEEECCCCcCCccChh
Confidence 88999999999999998765443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.1e-21 Score=209.32 Aligned_cols=252 Identities=19% Similarity=0.224 Sum_probs=164.8
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCccc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQ 360 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~ 360 (720)
++++++....++ .+..+++|++|++++|.+....+ +..+++|++|++++|.++.+|....+++|++|++++|.+..
T Consensus 49 L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~ 124 (347)
T 4fmz_A 49 LVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD 124 (347)
T ss_dssp EECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC
T ss_pred EEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC
Confidence 344444433332 36777788888888777666433 55577788888888777777654477778888888877777
Q ss_pred ccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCC
Q 004993 361 LWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI 440 (720)
Q Consensus 361 l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~ 440 (720)
++. +..+++|++|++++|.....++.+..+++|++|++++|......+ +..+++|+.|++++|.+.+ ++. +..++
T Consensus 125 ~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~ 199 (347)
T 4fmz_A 125 ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLT 199 (347)
T ss_dssp CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCT
T ss_pred chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCC
Confidence 665 677777777777777666666667777777777777776544322 6667777777777665433 332 44556
Q ss_pred CCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCC-CCCCCccEEe-----------ccCCCccccccCccccc
Q 004993 441 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP-ELPCNLFSVG-----------VRRCTSLEALSSFSFLF 508 (720)
Q Consensus 441 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~lp~~L~~L~-----------~~~~~~L~~L~l~~N~l 508 (720)
+|+.|++++|.+.+..+ +..+++|+.|++++|......+ ...++|+.|. +..+++|+.|++++|.+
T Consensus 200 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred ccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCcc
Confidence 66666666554333222 4555555666665554332211 1123444443 44568899999999988
Q ss_pred ccCCCCCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 509 SAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 509 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
++. ..+..+++|+.|++++|.+++..|..++.++.
T Consensus 278 ~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 278 SDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred CCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 775 34678899999999999998888887777655
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=6.3e-23 Score=219.73 Aligned_cols=237 Identities=14% Similarity=0.041 Sum_probs=152.6
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCCcccccCC-CCCCCCccEEec
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESKVEQLWDG-VPNLVNLKEIDL 376 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~i~~l~~~-~~~L~~L~~L~L 376 (720)
++|+.|++++|.+....+..+..+++|++|++++|.++.++.. + ++++|++|++++|+++.++.. +..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 3667777777666654444555566777777777766666442 3 566777777777777666644 566677777777
Q ss_pred CCCcCCCCCC--CCcCCcccceeecccccccc-cccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCC
Q 004993 377 SYSRQLKKLP--DLSQARNLENLLLKACSSLV-ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNL 453 (720)
Q Consensus 377 s~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~ 453 (720)
++|++....+ .+..+++|++|++++|...+ ..+..++.+++|+.|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l- 210 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH- 210 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-
Confidence 7766554333 26666777777777664333 3345566677777777776666666666666677777777776654
Q ss_pred Cccchh-ccCCCCCCEEcccCCcCcCcCCC------CCCCccEE-----------------eccCCCccccccCcccccc
Q 004993 454 RRIPES-IINLSKLELLHLKNCSKLLSLPE------LPCNLFSV-----------------GVRRCTSLEALSSFSFLFS 509 (720)
Q Consensus 454 ~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~------lp~~L~~L-----------------~~~~~~~L~~L~l~~N~l~ 509 (720)
+.+|.. +..+++|+.|++++|......+. ..+.++.+ .+.++++|+.|++++|.++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 334433 33466677777776654432211 11222222 2456789999999999998
Q ss_pred cCCCCCccccccccccccchhhHHHHHH
Q 004993 510 AMSPHNDQYFNLSDCLKLDQNELKGIAE 537 (720)
Q Consensus 510 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 537 (720)
...+..+..+++|+.|++++|++++..|
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6555556889999999999999987655
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.8e-21 Score=215.65 Aligned_cols=220 Identities=19% Similarity=0.151 Sum_probs=195.5
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESK 357 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~ 357 (720)
.++++++....+.+..|.++++|+.|+|++|.+....+..+..+++|++|++++|.++.+|... .+++|++|+|++|+
T Consensus 79 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 158 (452)
T 3zyi_A 79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158 (452)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC
T ss_pred EEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC
Confidence 5788888888888999999999999999999998877777888999999999999999998864 79999999999999
Q ss_pred cccccC-CCCCCCCccEEecCCCcCCCCCCC--CcCCcccceeecccccccccccccccCCcccceeecccccccccccc
Q 004993 358 VEQLWD-GVPNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS 434 (720)
Q Consensus 358 i~~l~~-~~~~L~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~ 434 (720)
++.++. .+..+++|++|++++|..+..++. +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|.+.+..|.
T Consensus 159 l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGG
T ss_pred cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcc
Confidence 998875 688999999999999777777765 8899999999999997664 44 688999999999999998888899
Q ss_pred ccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccc
Q 004993 435 SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS 509 (720)
Q Consensus 435 ~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~ 509 (720)
.+.++++|+.|+|++|.+.+..|..+..+++|+.|+|++|++....+. .+..+++|+.|++++|.+.
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD--------LFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT--------SSTTCTTCCEEECCSSCEE
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH--------HhccccCCCEEEccCCCcC
Confidence 999999999999999998888888999999999999999976543334 4677899999999999875
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=6.1e-22 Score=228.67 Aligned_cols=239 Identities=13% Similarity=0.053 Sum_probs=149.7
Q ss_pred eecCCccceecCc-hhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC-CCCC-ccEEEccCCC
Q 004993 281 LDMSKVNEIHLNS-STFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI-RLDT-LISLQLRESK 357 (720)
Q Consensus 281 l~ls~~~~~~~~~-~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~l~~-L~~L~L~~n~ 357 (720)
++++++....++. ..|.++++|+.|++++|.+.+..+ .++.+++|++|++++|.+..+|..+ .+++ |++|++++|.
T Consensus 310 L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp EECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC
T ss_pred EECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc
Confidence 4444444443332 266777777777777777664444 5555677777777777766776666 5666 7777777777
Q ss_pred cccccCCCCCCC--CccEEecCCCcCCCCCCC-Cc-------CCcccceeeccccccccccccc-ccCCcccceeecccc
Q 004993 358 VEQLWDGVPNLV--NLKEIDLSYSRQLKKLPD-LS-------QARNLENLLLKACSSLVETHSS-IQYLSKLVTLDMRLC 426 (720)
Q Consensus 358 i~~l~~~~~~L~--~L~~L~Ls~n~~~~~~p~-l~-------~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~L~~n 426 (720)
++.+|..+..+. +|++|++++|.+.+..|. +. .+++|+.|++++|.+. .+|.. +..+++|+.|+|++|
T Consensus 389 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSS
T ss_pred CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCC
Confidence 777776655543 677777777776665554 54 5667777777776655 34443 344677777777766
Q ss_pred ccccccccccCC--------CCCCcEEeccCCCCCCccchhcc--CCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCC
Q 004993 427 KNLNRLPSSLCE--------LISLQRLYLSGCSNLRRIPESII--NLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCT 496 (720)
Q Consensus 427 ~~~~~lp~~l~~--------l~~L~~L~L~~n~~~~~lp~~l~--~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~ 496 (720)
.+. .+|..+.. +++|+.|+|++|.+. .+|..+. .+++|+.|+|++|++.+ +|. .+.+++
T Consensus 468 ~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~--------~~~~l~ 536 (636)
T 4eco_A 468 MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPT--------QPLNSS 536 (636)
T ss_dssp CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCC--------GGGGCS
T ss_pred CCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cCh--------hhhcCC
Confidence 554 55543322 126777777776544 5666665 67777777777766554 555 455566
Q ss_pred ccccccC------cccccccCCCCCccccccccccccchhhH
Q 004993 497 SLEALSS------FSFLFSAMSPHNDQYFNLSDCLKLDQNEL 532 (720)
Q Consensus 497 ~L~~L~l------~~N~l~~~~~~~l~~l~~L~~L~L~~N~l 532 (720)
+|+.|++ ++|.+.+.+|..+..+++|+.|+|++|.+
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 6666666 34556666666666666667777766665
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=9.7e-22 Score=203.83 Aligned_cols=221 Identities=18% Similarity=0.153 Sum_probs=141.4
Q ss_pred cEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCCcccc-cCCCCCCCCccEEecCCC
Q 004993 303 RFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESKVEQL-WDGVPNLVNLKEIDLSYS 379 (720)
Q Consensus 303 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~i~~l-~~~~~~L~~L~~L~Ls~n 379 (720)
+.++.+++.+.. .+.+.+++|++|++++|.++.+|.. + .+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~---ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA---VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS---CCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc---CCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 344444444333 2223356667777777776666643 2 567777777777777665 456667777777777777
Q ss_pred cCCCCC-CC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccc
Q 004993 380 RQLKKL-PD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIP 457 (720)
Q Consensus 380 ~~~~~~-p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp 457 (720)
.....+ |. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.+.+..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 533333 33 6677777777777776666556667777777777777776555445556677777777777765544334
Q ss_pred hhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHH
Q 004993 458 ESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 534 (720)
Q Consensus 458 ~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 534 (720)
..+..+++|+.|++++|......|. .+.++++|+.|++++|.+++..+..+..++.|+.|++++|+++.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPH--------AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHhcCccccCEEECCCCcccccCHh--------HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 4566777777777777766555555 45666777777777777776655556667777777777776653
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=2.7e-21 Score=213.42 Aligned_cols=220 Identities=20% Similarity=0.209 Sum_probs=194.6
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESK 357 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~ 357 (720)
.++++++....+.+..|.++++|+.|+|++|.+....+..+..+++|++|++++|.++.+|.. + .+++|++|+|++|.
T Consensus 68 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 147 (440)
T 3zyj_A 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147 (440)
T ss_dssp EEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC
T ss_pred EEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc
Confidence 478888888888889999999999999999999887777777899999999999999999875 3 89999999999999
Q ss_pred cccccC-CCCCCCCccEEecCCCcCCCCCCC--CcCCcccceeecccccccccccccccCCcccceeecccccccccccc
Q 004993 358 VEQLWD-GVPNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS 434 (720)
Q Consensus 358 i~~l~~-~~~~L~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~ 434 (720)
++.++. .+..+++|++|++++|.....++. +.++++|+.|++++|.+. .+| .+..+++|+.|+|++|.+.+..|.
T Consensus 148 i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPG 225 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTT
T ss_pred ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChh
Confidence 998875 688999999999999777776665 899999999999999765 455 588999999999999988888899
Q ss_pred ccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccc
Q 004993 435 SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS 509 (720)
Q Consensus 435 ~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~ 509 (720)
.+..+++|+.|+|++|.+.+..|..+.++++|+.|+|++|++....+. .+.++++|+.|++++|.+.
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD--------LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT--------TTSSCTTCCEEECCSSCEE
T ss_pred hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh--------HhccccCCCEEEcCCCCcc
Confidence 999999999999999998888888899999999999999976644444 4677899999999999875
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.5e-22 Score=238.57 Aligned_cols=255 Identities=15% Similarity=0.117 Sum_probs=177.4
Q ss_pred EEEEeecCCccceecCchhhCCCCCccEEEe-eCCCCccc----------------------------------------
Q 004993 277 EGILLDMSKVNEIHLNSSTFKKMPRLRFLKF-HGENKFKI---------------------------------------- 315 (720)
Q Consensus 277 ~~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L-~~~~~~~~---------------------------------------- 315 (720)
+...++++++...+..+..++++++|+.|+| ++|.+.+.
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 4567888888887777889999999999999 66643221
Q ss_pred ------------------------------------ccCCcccccCceEEEecCCCCCC------------------CCC
Q 004993 316 ------------------------------------SHFEGEAFTELRYLYWDGYPSKS------------------LPP 341 (720)
Q Consensus 316 ------------------------------------~~~~~~~l~~L~~L~l~~~~~~~------------------lp~ 341 (720)
.|..++.+++|++|++++|.+.. +|.
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~ 483 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh
Confidence 22334457778888888888776 777
Q ss_pred CC---CCCCccEEEccCCCcc-cccCCCCCCCCccEEecCCCc-CCC-CCCC-CcCC-------cccceeeccccccccc
Q 004993 342 VI---RLDTLISLQLRESKVE-QLWDGVPNLVNLKEIDLSYSR-QLK-KLPD-LSQA-------RNLENLLLKACSSLVE 407 (720)
Q Consensus 342 ~~---~l~~L~~L~L~~n~i~-~l~~~~~~L~~L~~L~Ls~n~-~~~-~~p~-l~~l-------~~L~~L~L~~~~~~~~ 407 (720)
.+ ++++|++|+|++|++. .+|..+.++++|++|+|++|+ +.+ .+|. ++.+ ++|+.|++++|.+. .
T Consensus 484 ~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ 562 (876)
T 4ecn_A 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-E 562 (876)
T ss_dssp CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-B
T ss_pred hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-c
Confidence 65 4778888888887754 667777788888888888886 544 4553 4433 47888888887766 6
Q ss_pred ccc--cccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCC-CCEEcccCCcCcCcCCCCC
Q 004993 408 THS--SIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSK-LELLHLKNCSKLLSLPELP 484 (720)
Q Consensus 408 ~p~--~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~-L~~L~L~~~~~l~~lp~lp 484 (720)
+|. .++.+++|+.|+|++|.+. .+| .++.+++|+.|+|++|.+. .+|..+..+++ |+.|+|++|.+. .+|.
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~-- 636 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN-- 636 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS--
T ss_pred cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch--
Confidence 777 7788888888888877655 777 6777888888888887655 77777777777 888888887654 5664
Q ss_pred CCccEEeccCC--CccccccCcccccccCCCCC---cc--ccccccccccchhhHHHHHHHHHHHHH
Q 004993 485 CNLFSVGVRRC--TSLEALSSFSFLFSAMSPHN---DQ--YFNLSDCLKLDQNELKGIAEDALQKIQ 544 (720)
Q Consensus 485 ~~L~~L~~~~~--~~L~~L~l~~N~l~~~~~~~---l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~ 544 (720)
.+..+ ++|+.|++++|.+++.+|.. +. .+.+|+.|+|++|.++...+..+..++
T Consensus 637 ------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~ 697 (876)
T 4ecn_A 637 ------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697 (876)
T ss_dssp ------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC
T ss_pred ------hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCC
Confidence 22222 34777788888777765532 22 234677788888877754333333333
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=5.8e-22 Score=228.03 Aligned_cols=226 Identities=18% Similarity=0.108 Sum_probs=141.0
Q ss_pred CCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCC---CCCC-CCCCccEEEccCCCcccccCCCCCCCCccE
Q 004993 298 KMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSL---PPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKE 373 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~ 373 (720)
.+++|+.|++++|.... ..+...+++|++|++++|.+..+ |..+ .+++|++|++++|.+..+|..+..+++|++
T Consensus 326 ~l~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403 (606)
T ss_dssp CCSSCCEEEEESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE
T ss_pred CCCccceeeccCCcCcc--chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe
Confidence 44555555555543322 11333456666666666665544 3333 566666666666666666666666777777
Q ss_pred EecCCCcCCCCCC--CCcCCcccceeecccccccccccccccCCcccceeecccccccc-ccccccCCCCCCcEEeccCC
Q 004993 374 IDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISLQRLYLSGC 450 (720)
Q Consensus 374 L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n 450 (720)
|++++|.+....| .+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+ .+|..++.+++|+.|+|++|
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 7777766655555 26666777777777776666666666677777777777666555 35666666777777777777
Q ss_pred CCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccc-cccccccch
Q 004993 451 SNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFN-LSDCLKLDQ 529 (720)
Q Consensus 451 ~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~-~L~~L~L~~ 529 (720)
.+.+..|..+.++++|+.|+|++|+..+..|. .+.++++|+.|++++|.++. +|..+..++ +|+.+++++
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS--------HYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGG--------GTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCS
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHH--------HccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccC
Confidence 66666666666677777777777666555555 55666777777777777663 333355665 467777777
Q ss_pred hhHHH
Q 004993 530 NELKG 534 (720)
Q Consensus 530 N~l~~ 534 (720)
|++..
T Consensus 555 N~~~c 559 (606)
T 3vq2_A 555 NSVAC 559 (606)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76643
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=2.7e-21 Score=227.84 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=118.8
Q ss_pred hhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC-CCCC-ccEEEccCCCcccccCCCCCCCC--
Q 004993 295 TFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI-RLDT-LISLQLRESKVEQLWDGVPNLVN-- 370 (720)
Q Consensus 295 ~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~l~~-L~~L~L~~n~i~~l~~~~~~L~~-- 370 (720)
.|.++++|+.|++++|.+.. .+ .++.+++|+.|++++|.+..+|..+ .+++ |++|+|++|.++.+|..+..++.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~-lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCB-CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSC
T ss_pred hhhcCCCCCEEECCCCCccc-ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCC
Confidence 55566666666666665552 33 4444556666666666655555544 4555 66666666666655555544433
Q ss_pred ccEEecCCCcCCCCCCCCc------CCcccceeecccccccccccccc-cCCcccceeeccccccccccccccCCC----
Q 004993 371 LKEIDLSYSRQLKKLPDLS------QARNLENLLLKACSSLVETHSSI-QYLSKLVTLDMRLCKNLNRLPSSLCEL---- 439 (720)
Q Consensus 371 L~~L~Ls~n~~~~~~p~l~------~l~~L~~L~L~~~~~~~~~p~~l-~~l~~L~~L~L~~n~~~~~lp~~l~~l---- 439 (720)
|+.|+|++|.+.+.+|.+. .+++|+.|++++|.+. .+|..+ ..+++|+.|+|++|.+. .+|..+...
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc
Confidence 6666666665554444322 2345666666665544 344333 25556666666655433 444433322
Q ss_pred ----CCCcEEeccCCCCCCccchhcc--CCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcc------cc
Q 004993 440 ----ISLQRLYLSGCSNLRRIPESII--NLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFS------FL 507 (720)
Q Consensus 440 ----~~L~~L~L~~n~~~~~lp~~l~--~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~------N~ 507 (720)
++|+.|+|++|.+. .+|..+. .+++|+.|+|++|++.+ +|. .+.++++|+.|++++ |.
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~--------~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT--------QPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC--------GGGGCTTCCEEECCCCBCTTCCB
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch--------hhhcCCCCCEEECCCCCCccccc
Confidence 25666666665433 5555554 56666666666654443 443 344445555555433 44
Q ss_pred cccCCCCCccccccccccccchhhH
Q 004993 508 FSAMSPHNDQYFNLSDCLKLDQNEL 532 (720)
Q Consensus 508 l~~~~~~~l~~l~~L~~L~L~~N~l 532 (720)
+.+.+|..+..+++|+.|+|++|.+
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccccChHHHhcCCCCCEEECCCCCC
Confidence 5555555555555555555555544
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=233.14 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=51.8
Q ss_pred ccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCC
Q 004993 433 PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMS 512 (720)
Q Consensus 433 p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~ 512 (720)
|..+..+++|+.|+|++|.+.+..|..+..+++|++|+|++|......|. .+.++++|+.|++++|.+.+..
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS--------NFYGLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC--------SCSSCTTCCEEECCSCCCCCCC
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH--------HhcCCCCCCEEECCCCCCCccC
Confidence 33344444444444444444444444444445555555554443332232 3445567777777777777666
Q ss_pred CCCccccccccccccchhhHHH
Q 004993 513 PHNDQYFNLSDCLKLDQNELKG 534 (720)
Q Consensus 513 ~~~l~~l~~L~~L~L~~N~l~~ 534 (720)
+..+..+++|+.|++++|.+++
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SSCSCSCCCCCEEEEETCCSCC
T ss_pred hhhhcCCCCCCEEECCCCCCCc
Confidence 6666667777777777776553
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=6e-21 Score=202.49 Aligned_cols=242 Identities=15% Similarity=0.129 Sum_probs=194.8
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESK 357 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~ 357 (720)
.++++++....+.+..|.++++|+.|++++|.+... +. ...++|++|++++|.++.+|... .+++|++|++++|.
T Consensus 82 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~--~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI-PP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp EEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC-CS--SCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc-Cc--cccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 467778877788889999999999999999988752 22 23489999999999999998753 89999999999999
Q ss_pred ccc---ccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccc
Q 004993 358 VEQ---LWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP 433 (720)
Q Consensus 358 i~~---l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp 433 (720)
++. .+..+..+ +|++|++++|.+.. +|. +. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus 159 l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 159 LENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred cccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 973 45667777 99999999998665 554 43 799999999999888777899999999999999998887777
Q ss_pred cccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccc--cC
Q 004993 434 SSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS--AM 511 (720)
Q Consensus 434 ~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~--~~ 511 (720)
..+..+++|+.|+|++|.+ ..+|..+..+++|+.|++++|+....-+....... .....++|+.|++.+|.+. +.
T Consensus 235 ~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG--FGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp TGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS--CCSSSCCBSEEECCSSSSCGGGS
T ss_pred hHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCCCCCccChhHccccc--cccccccccceEeecCccccccc
Confidence 7899999999999999975 48999999999999999999876543333111110 0112467889999999887 56
Q ss_pred CCCCccccccccccccchhh
Q 004993 512 SPHNDQYFNLSDCLKLDQNE 531 (720)
Q Consensus 512 ~~~~l~~l~~L~~L~L~~N~ 531 (720)
.|..+..++.|+.+++++|.
T Consensus 312 ~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGGTTBCCSTTEEC----
T ss_pred Ccccccccchhhhhhccccc
Confidence 77778889999999999873
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=5.7e-22 Score=223.76 Aligned_cols=256 Identities=18% Similarity=0.147 Sum_probs=193.8
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCC-CCCC-CCCCccEEEccCCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSL-PPVI-RLDTLISLQLRESK 357 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~L~~n~ 357 (720)
.+|++++....++...+ ++|+.|++++|.+....+..+..+++|++|++++|.++.+ |..+ ++++|++|++++|+
T Consensus 4 ~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 57888877666665443 8999999999999886666677799999999999999988 4455 89999999999999
Q ss_pred cccccCCCCCCCCccEEecCCCcCCC-CCCC-CcCCcccceeecccccccccccccccCCccc--ceeecccccc--ccc
Q 004993 358 VEQLWDGVPNLVNLKEIDLSYSRQLK-KLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKL--VTLDMRLCKN--LNR 431 (720)
Q Consensus 358 i~~l~~~~~~L~~L~~L~Ls~n~~~~-~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L--~~L~L~~n~~--~~~ 431 (720)
++.+|.. .+++|++|+|++|.+.. .+|. ++.+++|++|++++|.+.+ ..+..+++| +.|++++|.+ .+.
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccc
Confidence 9999987 89999999999999876 4665 9999999999999998765 356667777 8888888876 455
Q ss_pred cccccCC--------------------------CC---------------------------------------------
Q 004993 432 LPSSLCE--------------------------LI--------------------------------------------- 440 (720)
Q Consensus 432 lp~~l~~--------------------------l~--------------------------------------------- 440 (720)
.|..+.. ++
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 5554444 22
Q ss_pred ------------CCcEEeccCCCCCCccchhc-----cCCCCCCEEcccCCcCcCcCCC-C------CCCccEEec----
Q 004993 441 ------------SLQRLYLSGCSNLRRIPESI-----INLSKLELLHLKNCSKLLSLPE-L------PCNLFSVGV---- 492 (720)
Q Consensus 441 ------------~L~~L~L~~n~~~~~lp~~l-----~~l~~L~~L~L~~~~~l~~lp~-l------p~~L~~L~~---- 492 (720)
+|++|++++|.+.+.+|..+ +.+++|+.+++++|.. .+|. . -.+|+.|.+
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence 44445555554444555555 5555555555555543 2331 0 034555554
Q ss_pred -------cCCCccccccCcccccccCCCCCccccccccccccchhhHHH--HHHHHHHHHHH
Q 004993 493 -------RRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG--IAEDALQKIQQ 545 (720)
Q Consensus 493 -------~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~ 545 (720)
..+++|+.|++++|.+++..|..+..++.|+.|++++|.+++ ..|..++.++.
T Consensus 314 l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375 (520)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence 577899999999999999889999999999999999999986 45566666555
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3.1e-21 Score=213.45 Aligned_cols=223 Identities=17% Similarity=0.098 Sum_probs=165.2
Q ss_pred hCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCC-CCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEE
Q 004993 296 FKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGY-PSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEI 374 (720)
Q Consensus 296 f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L 374 (720)
+..+++|+.|++++|.+... +.+.+++|++|++++| .++.+ ....+++|++|++++|+++.+| +..+++|+.|
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L 196 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRL 196 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEE
T ss_pred CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceec--cccCCCCCEE
Confidence 45555566666655555442 2344556666666665 24444 2235677777777777777776 6777788888
Q ss_pred ecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCC-------CCcEEec
Q 004993 375 DLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI-------SLQRLYL 447 (720)
Q Consensus 375 ~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~-------~L~~L~L 447 (720)
++++|.+... .++.+++|+.|++++|.+.+ +| ++.+++|+.|++++|.+.+..+..+.+++ +|+.|++
T Consensus 197 ~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l 271 (457)
T 3bz5_A 197 NCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDL 271 (457)
T ss_dssp ECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred ECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEEC
Confidence 8887775543 37778888888888887666 55 77888888888888876665444444444 5567777
Q ss_pred cCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCcccccccccccc
Q 004993 448 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL 527 (720)
Q Consensus 448 ~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L 527 (720)
++|...+.+| ++.+++|+.|++++|..++.+|...++|+.|.++++++|+.|++++|.+++. + +..++.|+.|++
T Consensus 272 ~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 272 THNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSC 346 (457)
T ss_dssp TTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEEC
T ss_pred CCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEEC
Confidence 7777777777 5678999999999999999988777889999999999999999999999985 3 778999999999
Q ss_pred chhhHHH
Q 004993 528 DQNELKG 534 (720)
Q Consensus 528 ~~N~l~~ 534 (720)
++|++++
T Consensus 347 ~~N~l~~ 353 (457)
T 3bz5_A 347 VNAHIQD 353 (457)
T ss_dssp CSSCCCB
T ss_pred CCCCCCC
Confidence 9999987
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=3.5e-22 Score=210.60 Aligned_cols=250 Identities=15% Similarity=0.086 Sum_probs=196.3
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCccc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQ 360 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~ 360 (720)
.+++...........+..+++|+.|++++|.+....+..+..+++|++|++++|.+..+++...+++|++|++++|.++.
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc
Confidence 34455544445556677888999999999988876655667789999999999998877764488999999999999987
Q ss_pred ccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccC-CC
Q 004993 361 LWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLC-EL 439 (720)
Q Consensus 361 l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~-~l 439 (720)
++. .++|++|++++|.+....+. .+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..|..+. .+
T Consensus 95 l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 95 LLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (317)
T ss_dssp EEE----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred ccC----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence 763 38999999999986654433 367899999999988877777888999999999999987776666663 68
Q ss_pred CCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCcccc
Q 004993 440 ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYF 519 (720)
Q Consensus 440 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l 519 (720)
++|++|+|++|.+. .+|. ...+++|++|+|++|... .+|. .+.++++|+.|++++|.+++ +|..+..+
T Consensus 169 ~~L~~L~L~~N~l~-~~~~-~~~l~~L~~L~Ls~N~l~-~l~~--------~~~~l~~L~~L~L~~N~l~~-l~~~~~~l 236 (317)
T 3o53_A 169 DTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGP--------EFQSAAGVTWISLRNNKLVL-IEKALRFS 236 (317)
T ss_dssp TTCCEEECTTSCCC-EEEC-CCCCTTCCEEECCSSCCC-EECG--------GGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred CcCCEEECCCCcCc-cccc-ccccccCCEEECCCCcCC-cchh--------hhcccCcccEEECcCCcccc-hhhHhhcC
Confidence 99999999998754 4444 345899999999998654 4554 57788999999999999885 46667888
Q ss_pred ccccccccchhhHH-HHHHHHHHHHHHhhh
Q 004993 520 NLSDCLKLDQNELK-GIAEDALQKIQQKAT 548 (720)
Q Consensus 520 ~~L~~L~L~~N~l~-~~~~~~~~~l~~~~~ 548 (720)
+.|+.|++++|.++ +..|..+..++.+..
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 99999999999998 777887777666443
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=4.9e-21 Score=198.51 Aligned_cols=202 Identities=16% Similarity=0.112 Sum_probs=109.1
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCC-CCC-CCCCccEEEccCCC-cccc-cCCCCCCCCccEEe
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLP-PVI-RLDTLISLQLRESK-VEQL-WDGVPNLVNLKEID 375 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~L~~n~-i~~l-~~~~~~L~~L~~L~ 375 (720)
++|+.|++++|.+....+..+..+++|++|++++|.++.++ ..+ .+++|++|++++|. +..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45566666665555544444444556666666666555552 223 45566666666664 5554 34455566666666
Q ss_pred cCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCC
Q 004993 376 LSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLR 454 (720)
Q Consensus 376 Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~ 454 (720)
+++|.+....|. +..+++|++|++++|.+....+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 666655444443 5555666666666655544444445556666666666554443333345555666666666655555
Q ss_pred ccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccc
Q 004993 455 RIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS 509 (720)
Q Consensus 455 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~ 509 (720)
..|..+..+++|+.|++++|......+. .+.++++|+.|++++|.+.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTE--------ALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHH--------HHTTCTTCCEEECCSSCEE
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHH--------HcccCcccCEEeccCCCcc
Confidence 5555555566666666666544332222 2445555555555555554
No 44
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=2.1e-20 Score=213.25 Aligned_cols=223 Identities=21% Similarity=0.164 Sum_probs=135.7
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCC
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYS 379 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n 379 (720)
++|+.|++++|.+..+.. .+++|++|++++|.++.+|. .+++|++|++++|+++.+|. .+++|+.|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 455555555554443211 24555555555555555554 44555555555555555444 3344444444444
Q ss_pred cCCCCCCCCcCCcccceeeccccccccccccc---c--------------cCCcccceeeccccccccccccccCCCCCC
Q 004993 380 RQLKKLPDLSQARNLENLLLKACSSLVETHSS---I--------------QYLSKLVTLDMRLCKNLNRLPSSLCELISL 442 (720)
Q Consensus 380 ~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~---l--------------~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L 442 (720)
++.. +|. .+++|++|++++|.+.+ +|.. + ..+++|+.|++++|.+. .+|. .+++|
T Consensus 132 ~l~~-lp~--~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~~---~~~~L 203 (622)
T 3g06_A 132 QLTS-LPV--LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPT---LPSEL 203 (622)
T ss_dssp CCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTC
T ss_pred CCCc-CCC--CCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCCC---ccchh
Confidence 4322 222 12444444444443322 1111 1 23366777777776543 3443 24567
Q ss_pred cEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCC---------CccccccCcccccccCCC
Q 004993 443 QRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC---------TSLEALSSFSFLFSAMSP 513 (720)
Q Consensus 443 ~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~---------~~L~~L~l~~N~l~~~~~ 513 (720)
+.|++++|.+ ..+|. .+++|+.|++++|.+ ..+|..+++|+.|.++++ ++|+.|++++|.++ .+|
T Consensus 204 ~~L~L~~N~l-~~l~~---~~~~L~~L~Ls~N~L-~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp 277 (622)
T 3g06_A 204 YKLWAYNNRL-TSLPA---LPSGLKELIVSGNRL-TSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLP 277 (622)
T ss_dssp CEEECCSSCC-SSCCC---CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCC
T ss_pred hEEECcCCcc-cccCC---CCCCCCEEEccCCcc-CcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCC
Confidence 7777777653 34553 247788888888754 457777788888877663 67999999999998 557
Q ss_pred CCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 514 HNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 514 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
..+..+++|+.|+|++|.+++..|..+..+..
T Consensus 278 ~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp GGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred HHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 78899999999999999999999999988876
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1e-21 Score=226.04 Aligned_cols=235 Identities=17% Similarity=0.095 Sum_probs=136.1
Q ss_pred hCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcc-cccCCCCCCCCccEE
Q 004993 296 FKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVE-QLWDGVPNLVNLKEI 374 (720)
Q Consensus 296 f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~-~l~~~~~~L~~L~~L 374 (720)
|..+++|+.|+++++.+.... ....+++|++|++++|.++.+|.. .+++|++|++++|... .+ .+..+++|++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence 666777777777777665432 444466777777777777767644 6666666666666322 22 34456666666
Q ss_pred ecCCCcCCCC--CCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccc-cccCCCCCCcEEeccCC
Q 004993 375 DLSYSRQLKK--LPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELISLQRLYLSGC 450 (720)
Q Consensus 375 ~Ls~n~~~~~--~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n 450 (720)
++++|.+... .|. +..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 6666654433 132 555666666666665433 244556666666666666665555544 45556666666666666
Q ss_pred CCCCccchhccCCCCCCEEcccCCcCcCc-CCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccch
Q 004993 451 SNLRRIPESIINLSKLELLHLKNCSKLLS-LPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQ 529 (720)
Q Consensus 451 ~~~~~lp~~l~~l~~L~~L~L~~~~~l~~-lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~ 529 (720)
.+.+..|..+..+++|+.|++++|...+. +|. .+.++++|+.|++++|.+++..|..+..+++|+.|++++
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN--------VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHH--------hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 65555555566666666666666655442 444 445555555566655555555555555555555566665
Q ss_pred hhHHHHHHHHHHHHH
Q 004993 530 NELKGIAEDALQKIQ 544 (720)
Q Consensus 530 N~l~~~~~~~~~~l~ 544 (720)
|++++..|..+++++
T Consensus 507 N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLY 521 (606)
T ss_dssp SCCSCEEGGGTTTCT
T ss_pred CcCCCcCHHHccCCC
Confidence 555554454444433
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=4.4e-21 Score=218.58 Aligned_cols=97 Identities=24% Similarity=0.193 Sum_probs=73.9
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCC--CCC-CCCCccEEEccCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLP--PVI-RLDTLISLQLRES 356 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~-~l~~L~~L~L~~n 356 (720)
.++++++....+.+.+|.++++|++|++++|.+.... .. .+++|++|++++|.+..+| ..+ ++++|++|++++|
T Consensus 80 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS-CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEEC-SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred EEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccC-cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence 5777888888888889999999999999999987533 32 6899999999999988876 344 7899999999998
Q ss_pred CcccccCCCCCCCCc--cEEecCCCcC
Q 004993 357 KVEQLWDGVPNLVNL--KEIDLSYSRQ 381 (720)
Q Consensus 357 ~i~~l~~~~~~L~~L--~~L~Ls~n~~ 381 (720)
.+... .+..+++| ++|++++|.+
T Consensus 157 ~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 157 KFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp BCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred ccccC--chhhhhhceeeEEEeecccc
Confidence 87642 23334444 6666666654
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=4.2e-21 Score=223.97 Aligned_cols=266 Identities=16% Similarity=0.149 Sum_probs=177.2
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESK 357 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~ 357 (720)
.++++++....+.+..|.++++|++|++++|.+....+..++.+++|++|++++|.+..+|.. + ++++|++|++++|+
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence 467777777777888899999999999999888776666667789999999999998888874 4 78999999999999
Q ss_pred ccccc-CCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccccccccccccc--CCcccceeeccccccccccc
Q 004993 358 VEQLW-DGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQ--YLSKLVTLDMRLCKNLNRLP 433 (720)
Q Consensus 358 i~~l~-~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~--~l~~L~~L~L~~n~~~~~lp 433 (720)
+..++ ..+.++++|++|++++|.+....|. +..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+..|
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 98876 5688899999999999987777665 78888999999988877665555443 45778888888877665555
Q ss_pred cccCCC---------------------------CCCcEEeccCCCCCCccchhccCCCC--CCEEcccCCcCcCcCCCC-
Q 004993 434 SSLCEL---------------------------ISLQRLYLSGCSNLRRIPESIINLSK--LELLHLKNCSKLLSLPEL- 483 (720)
Q Consensus 434 ~~l~~l---------------------------~~L~~L~L~~n~~~~~lp~~l~~l~~--L~~L~L~~~~~l~~lp~l- 483 (720)
..+..+ ++|+.|++++|.+.+..|..+..++. |+.|++++|......|..
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~ 268 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc
Confidence 444332 34555555555555555555555433 666666666544433331
Q ss_pred --CCCccEE-------------eccCCCccccccCccccccc-----CCC----CCccccccccccccchhhHHHHHHHH
Q 004993 484 --PCNLFSV-------------GVRRCTSLEALSSFSFLFSA-----MSP----HNDQYFNLSDCLKLDQNELKGIAEDA 539 (720)
Q Consensus 484 --p~~L~~L-------------~~~~~~~L~~L~l~~N~l~~-----~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~ 539 (720)
.++|+.| .+.++++|+.|++++|...+ .+| ..+..+++|+.|++++|.+++..+..
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence 0112222 23344555555555443221 111 13445666666677777666655555
Q ss_pred HHHHHH
Q 004993 540 LQKIQQ 545 (720)
Q Consensus 540 ~~~l~~ 545 (720)
+.+++.
T Consensus 349 ~~~l~~ 354 (680)
T 1ziw_A 349 FTGLIN 354 (680)
T ss_dssp TTTCTT
T ss_pred hccccC
Confidence 544443
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=5e-21 Score=204.26 Aligned_cols=233 Identities=19% Similarity=0.194 Sum_probs=144.9
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCC-CCCCCCCCCCCCccEEEccCCCcc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYP-SKSLPPVIRLDTLISLQLRESKVE 359 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~l~~L~~L~L~~n~i~ 359 (720)
++++++....+ +.|.++++|+.|++++|.+....+ ...+++|++|++++|. ...++....+++|++|++++|.+.
T Consensus 93 L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 93 LYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp EECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred EEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC
Confidence 44555544433 357788888888888887766433 4457788888888874 444444447777888888887777
Q ss_pred cccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCC
Q 004993 360 QLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCEL 439 (720)
Q Consensus 360 ~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l 439 (720)
.++. +..+++|++|++++|.+. .++.+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... |. +..+
T Consensus 169 ~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l 242 (347)
T 4fmz_A 169 DVTP-IANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANL 242 (347)
T ss_dssp CCGG-GGGCTTCSEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTC
T ss_pred Cchh-hccCCCCCEEEccCCccc-ccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcC
Confidence 6655 677777888888777643 34446677777777777776554332 66777777777777754433 32 6677
Q ss_pred CCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCcccc
Q 004993 440 ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYF 519 (720)
Q Consensus 440 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l 519 (720)
++|++|++++|.+.+ + ..+..+++|+.|++++|.... +| .+.++++|+.|++++|.+++..+..+..+
T Consensus 243 ~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~---------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 243 SQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS---------VLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp TTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG---------GGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred CCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch---------hhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 777777777775443 3 346677777777777764432 33 23444555555555555544444444445
Q ss_pred ccccccccchhhHHHH
Q 004993 520 NLSDCLKLDQNELKGI 535 (720)
Q Consensus 520 ~~L~~L~L~~N~l~~~ 535 (720)
++|+.|++++|.+++.
T Consensus 311 ~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDI 326 (347)
T ss_dssp TTCSEEECCSSSCCCC
T ss_pred ccCCEEEccCCccccc
Confidence 5555555555554443
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=7e-22 Score=220.62 Aligned_cols=231 Identities=16% Similarity=0.114 Sum_probs=194.0
Q ss_pred CCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecC
Q 004993 298 KMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLS 377 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls 377 (720)
.+++|+.|+|++|.+....+..+..+++|++|++++|.+..+++...+++|++|+|++|.++.+|.. ++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 4558999999999998876667778999999999999988777655899999999999999988743 899999999
Q ss_pred CCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccC-CCCCCcEEeccCCCCCCcc
Q 004993 378 YSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLC-ELISLQRLYLSGCSNLRRI 456 (720)
Q Consensus 378 ~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~-~l~~L~~L~L~~n~~~~~l 456 (720)
+|.+....+. .+++|+.|++++|.+.+..|..++.+++|+.|+|++|.+.+..|..+. .+++|++|+|++|.+.+.
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 9987665443 468899999999999888888999999999999999998888888776 799999999999986554
Q ss_pred chhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHH-HH
Q 004993 457 PESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELK-GI 535 (720)
Q Consensus 457 p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~ 535 (720)
|. ...+++|+.|+|++|.+.+ +|. .+.++++|+.|++++|.+++ +|..+..++.|..|++++|.++ +.
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~-~~~--------~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSNKLAF-MGP--------EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp EC-CCCCTTCCEEECCSSCCCE-ECG--------GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred cc-cccCCCCCEEECCCCCCCC-CCH--------hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 43 4469999999999987654 444 57788999999999999987 4666788899999999999987 66
Q ss_pred HHHHHHHHHHh
Q 004993 536 AEDALQKIQQK 546 (720)
Q Consensus 536 ~~~~~~~l~~~ 546 (720)
+|..+..++.+
T Consensus 254 ~~~~~~~l~~L 264 (487)
T 3oja_A 254 LRDFFSKNQRV 264 (487)
T ss_dssp HHHHHTTCHHH
T ss_pred hHHHHHhCCCC
Confidence 77777766553
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=1.4e-21 Score=222.11 Aligned_cols=174 Identities=20% Similarity=0.174 Sum_probs=144.3
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESK 357 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~ 357 (720)
.+|++++....+.+..|.++++|++|++++|.+....+..+..+++|++|++++|.+..+|.. + ++++|++|++++|.
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 577888877778888899999999999999998887767777899999999999999888875 3 89999999999999
Q ss_pred ccc--ccCCCCCCCCccEEecCCCcCCCCCC--CCcCCcccceeecccccccccccccccCCcccceeeccccccccccc
Q 004993 358 VEQ--LWDGVPNLVNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP 433 (720)
Q Consensus 358 i~~--l~~~~~~L~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp 433 (720)
++. .|..+..+++|++|++++|...+.+| .+..+++|++|++++|.+.+..|..++.+++|+.|++++|.. +.+|
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~ 188 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLL 188 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTHH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-cccc
Confidence 985 46778999999999999998666665 388999999999999998888888898888888888887764 3444
Q ss_pred cc-cCCCCCCcEEeccCCCCCC
Q 004993 434 SS-LCELISLQRLYLSGCSNLR 454 (720)
Q Consensus 434 ~~-l~~l~~L~~L~L~~n~~~~ 454 (720)
.. +..+++|++|++++|.+.+
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTT
T ss_pred hhhHhhcccccEEEccCCcccc
Confidence 43 3457888888888876554
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=3.9e-20 Score=204.48 Aligned_cols=245 Identities=18% Similarity=0.170 Sum_probs=146.5
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcc
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVE 359 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~ 359 (720)
.++++++....++ .|.++++|+.|++++|.+..... .+.+|++|++++|.+..+|...++++|++|++++|.++
T Consensus 135 ~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 135 YLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp EEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred EEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCC----CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence 3556666555544 48888888888888887765221 24588888888888888885457888888888888888
Q ss_pred cccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCC
Q 004993 360 QLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCEL 439 (720)
Q Consensus 360 ~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l 439 (720)
.+|... ++|++|++++|.+. .+|.+..+++|++|++++|.+.+ +|.. +++|+.|++++|.+.+ +|.. +
T Consensus 209 ~l~~~~---~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 209 KLPDLP---LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp SCCCCC---TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---C
T ss_pred cCCCCc---CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---c
Confidence 776543 57888888888655 66778888888888888876654 4432 3677777777775443 5542 3
Q ss_pred CCCcEEeccCCCCCC--ccchhc-------------cCC-CCCCEEcccCCcCcCcCCCCCCCccEEeccCC--------
Q 004993 440 ISLQRLYLSGCSNLR--RIPESI-------------INL-SKLELLHLKNCSKLLSLPELPCNLFSVGVRRC-------- 495 (720)
Q Consensus 440 ~~L~~L~L~~n~~~~--~lp~~l-------------~~l-~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~-------- 495 (720)
++|+.|++++|.+.+ .+|..+ ..+ ++|+.|++++|+.. .+|..+++|+.|+++++
T Consensus 277 ~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N~l~~lp~~ 355 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPEL 355 (454)
T ss_dssp TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCC
T ss_pred CcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc-cccccCCcCCEEECCCCccccccch
Confidence 566666666665443 222111 122 36677777766544 36665666666666543
Q ss_pred -CccccccCccccccc--CCCCCcccc-------------ccccccccchhhHHH--HHHHHHHHH
Q 004993 496 -TSLEALSSFSFLFSA--MSPHNDQYF-------------NLSDCLKLDQNELKG--IAEDALQKI 543 (720)
Q Consensus 496 -~~L~~L~l~~N~l~~--~~~~~l~~l-------------~~L~~L~L~~N~l~~--~~~~~~~~l 543 (720)
++|+.|++++|.+++ .+|..+..+ ++|+.|++++|.+++ .+|..+..+
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 467777777777776 556666655 566777777777665 455544443
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=1.3e-20 Score=219.90 Aligned_cols=256 Identities=18% Similarity=0.165 Sum_probs=146.5
Q ss_pred ecCCccceecCchhhCCCCCccEEEeeCCCCcc--cccCCccc--ccCceEEEecCCCCCCCCC-CC-CCCCccEEEccC
Q 004993 282 DMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFK--ISHFEGEA--FTELRYLYWDGYPSKSLPP-VI-RLDTLISLQLRE 355 (720)
Q Consensus 282 ~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~--~~~~~~~~--l~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~L~~ 355 (720)
+++++....+.+..|.++++|+.|++++|.... .....+.. .+.|+.|++++|.+..++. .+ .+++|++|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 334444444444445555555555555443211 01111111 2345555555555544432 22 455566666666
Q ss_pred CCcc-ccc-CCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccccc--ccccccccCCcccceeecccccccc
Q 004993 356 SKVE-QLW-DGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSL--VETHSSIQYLSKLVTLDMRLCKNLN 430 (720)
Q Consensus 356 n~i~-~l~-~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~--~~~p~~l~~l~~L~~L~L~~n~~~~ 430 (720)
|.+. .+| ..+..+++|++|++++|++....+. +..+++|+.|++++|... +..|..+..+++|+.|++++|.+.+
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 5554 233 3455555666666665554444333 555566666666655443 3455566666666666666665554
Q ss_pred ccccccCCCCCCcEEeccCCCCCCcc----c----hhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCcccccc
Q 004993 431 RLPSSLCELISLQRLYLSGCSNLRRI----P----ESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALS 502 (720)
Q Consensus 431 ~lp~~l~~l~~L~~L~L~~n~~~~~l----p----~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~ 502 (720)
..|..+..+++|+.|+|++|.+.+.. | ..+.++++|+.|+|++|... .+|.. .+.++++|+.|+
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~-------~~~~l~~L~~L~ 566 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVE-------VFKDLFELKIID 566 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTT-------TTTTCTTCCEEE
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHH-------HcccccCcceeE
Confidence 44455566666666666666543321 1 12455666666666666443 33320 366788999999
Q ss_pred CcccccccCCCCCccccccccccccchhhHHHHHHHHHH-HHHH
Q 004993 503 SFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQ-KIQQ 545 (720)
Q Consensus 503 l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~ 545 (720)
+++|.+++.++..+..++.|+.|++++|.+++..+..+. .++.
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 610 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccc
Confidence 999999988887788899999999999999988887776 4444
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1e-20 Score=218.35 Aligned_cols=125 Identities=28% Similarity=0.314 Sum_probs=109.1
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESK 357 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~ 357 (720)
.||++++....+++.+|.++++|++|+|++|.+..+.+..+..+++|++|++++|.++.+|.. + ++++|++|+|++|+
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence 688999988889999999999999999999999887777788899999999999999999875 3 89999999999999
Q ss_pred cccccC-CCCCCCCccEEecCCCcCCC-CCCC-CcCCcccceeecccccc
Q 004993 358 VEQLWD-GVPNLVNLKEIDLSYSRQLK-KLPD-LSQARNLENLLLKACSS 404 (720)
Q Consensus 358 i~~l~~-~~~~L~~L~~L~Ls~n~~~~-~~p~-l~~l~~L~~L~L~~~~~ 404 (720)
++.++. .++++++|++|+|++|.+.. ..|. ++.+++|++|++++|.+
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 998875 48999999999999998755 3455 78889999999888754
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1.2e-21 Score=206.54 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=194.2
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcc
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVE 359 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~ 359 (720)
.++++++....+.+..|.++++|+.|++++|.+....+ +..+++|++|++++|.++.+|. .++|++|++++|+++
T Consensus 38 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l~~n~l~ 112 (317)
T 3o53_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNIS 112 (317)
T ss_dssp EEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE---CTTCCEEECCSSCCS
T ss_pred EEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC---CCCcCEEECCCCccC
Confidence 47888888888888999999999999999999887554 6669999999999999888774 489999999999999
Q ss_pred cccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccc-cCCcccceeeccccccccccccccC
Q 004993 360 QLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSI-QYLSKLVTLDMRLCKNLNRLPSSLC 437 (720)
Q Consensus 360 ~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l-~~l~~L~~L~L~~n~~~~~lp~~l~ 437 (720)
.++.. .+++|++|++++|.+....+. +..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+ +|. ..
T Consensus 113 ~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~ 188 (317)
T 3o53_A 113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QV 188 (317)
T ss_dssp EEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CC
T ss_pred CcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-cc
Confidence 88743 478999999999998776664 8899999999999999888777766 478999999999997554 444 33
Q ss_pred CCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccc-cCCCCCc
Q 004993 438 ELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS-AMSPHND 516 (720)
Q Consensus 438 ~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~-~~~~~~l 516 (720)
.+++|++|+|++|.+. .+|..+..+++|+.|++++|+.. .+|. .+..+++|+.|++++|.+. +..|..+
T Consensus 189 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp CCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECT--------TCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred ccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhh--------HhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 6999999999999754 56777999999999999998655 6676 5678899999999999998 6666777
Q ss_pred cccccccccccchh
Q 004993 517 QYFNLSDCLKLDQN 530 (720)
Q Consensus 517 ~~l~~L~~L~L~~N 530 (720)
..++.|+.+++..+
T Consensus 259 ~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 259 SKNQRVQTVAKQTV 272 (317)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred hccccceEEECCCc
Confidence 77777777777643
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=4.2e-21 Score=197.62 Aligned_cols=207 Identities=17% Similarity=0.158 Sum_probs=132.0
Q ss_pred hCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCC-CCCCCCccEE
Q 004993 296 FKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDG-VPNLVNLKEI 374 (720)
Q Consensus 296 f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~L~~L~~L 374 (720)
...+++|+.|++++|.+.... ....+++|++|++++|.+..++....+++|++|++++|.++.++.. +..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345667777777776655422 2344677777777777776665444677777777777777766543 5667777777
Q ss_pred ecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCC
Q 004993 375 DLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNL 453 (720)
Q Consensus 375 ~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~ 453 (720)
++++|.+....+. +..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..+..++.+++|++|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 7777766554444 566777777777777655544445566777777777776655555555566677777777776666
Q ss_pred CccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCcccc
Q 004993 454 RRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYF 519 (720)
Q Consensus 454 ~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l 519 (720)
+..|..+..+++|+.|++++|+.. ..|++|+.+++..|.++|.+|..++.+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~---------------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD---------------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC---------------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc---------------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 555555666777777777766432 234556666666666666666655444
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.8e-21 Score=220.55 Aligned_cols=226 Identities=18% Similarity=0.156 Sum_probs=157.1
Q ss_pred CccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccc---cCCCCCCCCccEEecC
Q 004993 301 RLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQL---WDGVPNLVNLKEIDLS 377 (720)
Q Consensus 301 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l---~~~~~~L~~L~~L~Ls 377 (720)
+|+.|++++|.+.. .+...+++|++|++++|.+........+++|++|++++|.+..+ +..+..+++|++|+++
T Consensus 305 ~L~~L~l~~n~~~~---l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 305 GWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp CCSEEEEESCBCSS---CCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred CccEEeeccCcccc---cCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence 45555555544432 11233555666666655544443334567777777777777654 4556677777777777
Q ss_pred CCcCCCCCCCCcCCcccceeeccccccccccc-ccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCC-Cc
Q 004993 378 YSRQLKKLPDLSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNL-RR 455 (720)
Q Consensus 378 ~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~-~~ 455 (720)
+|.+....+.+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|...+..|..+..+++|++|++++|.+. +.
T Consensus 382 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc
Confidence 77655544447777788888888777665544 45677788888888887777777777777888888888887765 46
Q ss_pred cchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHHH
Q 004993 456 IPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI 535 (720)
Q Consensus 456 lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 535 (720)
+|..+..+++|+.|++++|+..+..|. .+.++++|+.|++++|.+++.++..+..++.|+.+++++|++++.
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPT--------AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred chhhhhcccCCCEEECCCCccccCChh--------hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 777777888888888888776665565 567778888888888888888777777888888888888887765
Q ss_pred HH
Q 004993 536 AE 537 (720)
Q Consensus 536 ~~ 537 (720)
.|
T Consensus 534 ~~ 535 (570)
T 2z63_A 534 CP 535 (570)
T ss_dssp TT
T ss_pred Cc
Confidence 44
No 57
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=1.8e-20 Score=192.87 Aligned_cols=210 Identities=16% Similarity=0.079 Sum_probs=181.1
Q ss_pred cccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceee
Q 004993 320 GEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLL 398 (720)
Q Consensus 320 ~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~ 398 (720)
...+++|+.|++++|.++.++....+++|++|++++|.+..++ .+..+++|++|++++|.+....+. +..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3348999999999999999987668999999999999999875 788999999999999987766665 79999999999
Q ss_pred cccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcC
Q 004993 399 LKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLL 478 (720)
Q Consensus 399 L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~ 478 (720)
+++|.+.+..+..++.+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|+..+
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 99998887777778999999999999998776666667899999999999998777666678999999999999998776
Q ss_pred cCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 479 SLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 479 ~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
..|. .+.++++|+.|++++|.+.+. ++.++.+++..|.++|.+|..++.+..
T Consensus 196 ~~~~--------~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 196 VPDG--------VFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCTT--------TTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCHH--------HHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 5554 467889999999999988754 456788999999999999888776654
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=8.3e-21 Score=216.57 Aligned_cols=149 Identities=26% Similarity=0.313 Sum_probs=112.2
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCC-CC-CCCCccEEEccCCC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPP-VI-RLDTLISLQLRESK 357 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~L~~n~ 357 (720)
.+|++++....+.+.+|.++++|++|++++|.+....+..+..+++|++|++++|.+..+|. .+ ++++|++|++++|+
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence 46777777777777788888888888888888777666666778888888888888877764 33 78888888888888
Q ss_pred cccccC-CCCCCCCccEEecCCCcCCC-CCCC-CcCCcccceeecccccccccccccccCCccc----ceeecccccc
Q 004993 358 VEQLWD-GVPNLVNLKEIDLSYSRQLK-KLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKL----VTLDMRLCKN 428 (720)
Q Consensus 358 i~~l~~-~~~~L~~L~~L~Ls~n~~~~-~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L----~~L~L~~n~~ 428 (720)
++.++. .++.+++|++|++++|.+.. .+|. ++++++|++|++++|.+.+..+..++.+++| +.|++++|.+
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 887765 57888888888888887665 3565 7888888888888887766656666666666 5666665543
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=1.4e-20 Score=204.31 Aligned_cols=236 Identities=14% Similarity=0.071 Sum_probs=184.1
Q ss_pred CCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCC-CC-CCCCccEEEccCCCccccc-CCCCCCCCccEE
Q 004993 298 KMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPP-VI-RLDTLISLQLRESKVEQLW-DGVPNLVNLKEI 374 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~L~~n~i~~l~-~~~~~L~~L~~L 374 (720)
.+++++.|+++++.+....+..+..+++|++|++++|.+..+|. .+ .+++|++|++++|.+..++ ..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999998877544445669999999999999999886 34 8999999999999999886 558999999999
Q ss_pred ecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCC---------------
Q 004993 375 DLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCE--------------- 438 (720)
Q Consensus 375 ~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~--------------- 438 (720)
++++|.+....+. +..+++|++|++++|.+.+..|..++.+++|+.|++++|.+.+.-...+.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 9999987654444 689999999999999988877888999999999999998765432111111
Q ss_pred ----------------------CCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCC
Q 004993 439 ----------------------LISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCT 496 (720)
Q Consensus 439 ----------------------l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~ 496 (720)
.++|+.|++++|.+.+ . ..+..+++|++|++++|......|. .+.+++
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~ 272 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYH--------PFVKMQ 272 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESG--------GGTTCS
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcChh--------Hccccc
Confidence 1245556666655433 2 4578899999999999987766666 677888
Q ss_pred ccccccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 497 SLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 497 ~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
+|+.|++++|.+++. |..+..++.|+.|++++|.+++. |..+..++.
T Consensus 273 ~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~ 319 (390)
T 3o6n_A 273 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDR 319 (390)
T ss_dssp SCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTT
T ss_pred cCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCc
Confidence 999999999888764 44456788899999999988753 444555544
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=6.4e-20 Score=202.93 Aligned_cols=210 Identities=17% Similarity=0.113 Sum_probs=131.8
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCccc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQ 360 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~ 360 (720)
++++++....++ +..+++|+.|++++|.+... +++.+++|++|++++|.++.+| ...+++|++|++++|+++.
T Consensus 69 L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 69 LICTSNNITTLD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp EECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSC
T ss_pred EEccCCcCCeEc---cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccce
Confidence 444444433332 56666777777777666553 2445667777777777766665 3366677777777777766
Q ss_pred ccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCC
Q 004993 361 LWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI 440 (720)
Q Consensus 361 l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~ 440 (720)
++ +..+++|++|++++|...+.+ .+..+++|+.|++++|.+.+ +| ++.+++|+.|++++|.+.+. .++.++
T Consensus 142 l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~ 212 (457)
T 3bz5_A 142 ID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNI 212 (457)
T ss_dssp CC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCT
T ss_pred ec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCC
Confidence 53 566677777777777555544 46667777777777776554 44 67777788888877765443 366788
Q ss_pred CCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCccccccc
Q 004993 441 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 510 (720)
Q Consensus 441 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~ 510 (720)
+|+.|++++|.+.+ +| +..+++|+.|++++|+..+..+...++|+.|.+.+ .+|+.|++++|.+.+
T Consensus 213 ~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~-n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 213 QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ-TDLLEIDLTHNTQLI 278 (457)
T ss_dssp TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT-CCCSCCCCTTCTTCC
T ss_pred CCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC-CCCCEEECCCCccCC
Confidence 88888888887555 66 77888888888888876554333344555444332 234444444443333
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=6.1e-20 Score=188.69 Aligned_cols=170 Identities=21% Similarity=0.153 Sum_probs=77.6
Q ss_pred ccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCCcccccCC-CCCCCCccEEecCC
Q 004993 302 LRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESKVEQLWDG-VPNLVNLKEIDLSY 378 (720)
Q Consensus 302 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~i~~l~~~-~~~L~~L~~L~Ls~ 378 (720)
++.++++++.+.. . +...+++|+.|++++|.+..+|.. + ++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-i--p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-I--PSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-C--CSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-c--CCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4455555544433 1 111234455555555555554432 2 445555555555555544433 24455555555555
Q ss_pred CcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccc
Q 004993 379 SRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIP 457 (720)
Q Consensus 379 n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp 457 (720)
|.+....+. +..+++|++|++++|.+....+..++.+++|++|++++|.+.+..+..+..+++|+.|+|++|.+.+..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 544333332 4445555555555544444434444445555555555444333323334444555555555444333333
Q ss_pred hhccCCCCCCEEcccCC
Q 004993 458 ESIINLSKLELLHLKNC 474 (720)
Q Consensus 458 ~~l~~l~~L~~L~L~~~ 474 (720)
..+..+++|+.|+|++|
T Consensus 175 ~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNN 191 (270)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred hHhccCCCcCEEECCCC
Confidence 33444455555555544
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=8.9e-21 Score=226.27 Aligned_cols=255 Identities=16% Similarity=0.112 Sum_probs=138.9
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccc-cCCcccccCceEEEecCCCCCCC-CCCC-CCCCccEEEccCCC
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKIS-HFEGEAFTELRYLYWDGYPSKSL-PPVI-RLDTLISLQLRESK 357 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~L~~n~ 357 (720)
+|++++....+.+..|.++++|++|++++|...... +..+..+++|++|++++|.+..+ |..+ ++++|++|+|++|.
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 444455444555555666666666666655332222 33444456666666666655554 3333 55666666666665
Q ss_pred ccc-ccCC--CCCCCCccEEecCCCcCCCCCCC--CcCCcccceeecccccccccccccccCC--cccceeecccccccc
Q 004993 358 VEQ-LWDG--VPNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYL--SKLVTLDMRLCKNLN 430 (720)
Q Consensus 358 i~~-l~~~--~~~L~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~~~~p~~l~~l--~~L~~L~L~~n~~~~ 430 (720)
+.. +|.. +..+++|++|+|++|.+....+. ++++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+
T Consensus 109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence 553 3332 55566666666666655444332 5556666666666655555555555554 556666666655555
Q ss_pred ccccccCCCCC------CcEEeccCCCCCCccchhccC--------------------------------------CCCC
Q 004993 431 RLPSSLCELIS------LQRLYLSGCSNLRRIPESIIN--------------------------------------LSKL 466 (720)
Q Consensus 431 ~lp~~l~~l~~------L~~L~L~~n~~~~~lp~~l~~--------------------------------------l~~L 466 (720)
..|..++.+++ |+.|++++|.+.+..|..+.. .++|
T Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L 268 (844)
T 3j0a_A 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268 (844)
T ss_dssp CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCC
T ss_pred ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCc
Confidence 55544444333 666666665544444333221 1345
Q ss_pred CEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHHH
Q 004993 467 ELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKI 543 (720)
Q Consensus 467 ~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 543 (720)
+.|++++|......|. .+.++++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+..+
T Consensus 269 ~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSR--------VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp CEEECTTCCCCEECSC--------CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred cEEECCCCcccccChh--------hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 5555555443333333 34556677777777777777767667777777777777777665444444333
No 63
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.1e-20 Score=216.64 Aligned_cols=236 Identities=14% Similarity=0.067 Sum_probs=180.4
Q ss_pred CCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCC-CC-CCCCccEEEccCCCcccccC-CCCCCCCccEE
Q 004993 298 KMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPP-VI-RLDTLISLQLRESKVEQLWD-GVPNLVNLKEI 374 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~L~~n~i~~l~~-~~~~L~~L~~L 374 (720)
.+++++.|++++|.+....+..+..+++|++|++++|.+..+|. .+ .+++|++|+|++|.+..+|. .++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46899999999998877555455669999999999999999886 44 89999999999999998875 47999999999
Q ss_pred ecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCC---------------
Q 004993 375 DLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCE--------------- 438 (720)
Q Consensus 375 ~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~--------------- 438 (720)
+|++|.+....+. ++.+++|++|++++|.+.+..|..++.+++|+.|++++|.+.+..+..+.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 9999987765555 799999999999999998888888999999999999999765432221111
Q ss_pred -C---------------------CCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCC
Q 004993 439 -L---------------------ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCT 496 (720)
Q Consensus 439 -l---------------------~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~ 496 (720)
+ ++|+.|+|++|.+.+ +..+..+++|+.|+|++|.+.+..|. .+.+++
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~ 278 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH--------PFVKMQ 278 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG--------GGTTCS
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH--------HhcCcc
Confidence 1 234444444444333 24466777777777777766665555 567778
Q ss_pred ccccccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 497 SLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 497 ~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
+|+.|++++|.+++. |..+..++.|+.|+|++|.+++ +|..+..++.
T Consensus 279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~ 325 (597)
T 3oja_B 279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDR 325 (597)
T ss_dssp SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTT
T ss_pred CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCc-cCcccccCCC
Confidence 888888888888774 4455678888899999988874 4444555554
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=7.2e-22 Score=207.67 Aligned_cols=220 Identities=19% Similarity=0.104 Sum_probs=163.4
Q ss_pred ccEEEeeCCCCcccc-cCCcc-------cccCceEEEecCCCCC-CCCCCC---CCCCccEEEccCCCcccccCCCCCC-
Q 004993 302 LRFLKFHGENKFKIS-HFEGE-------AFTELRYLYWDGYPSK-SLPPVI---RLDTLISLQLRESKVEQLWDGVPNL- 368 (720)
Q Consensus 302 L~~L~L~~~~~~~~~-~~~~~-------~l~~L~~L~l~~~~~~-~lp~~~---~l~~L~~L~L~~n~i~~l~~~~~~L- 368 (720)
|+.|++++|.+.... +.... .+++|++|++++|.+. .+|..+ .+++|++|++++|+++.+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 777777777664321 11111 3778888888888876 566653 6888888888888888777666666
Q ss_pred ----CCccEEecCCCcCCCCCCC-CcCCcccceeeccccccccc--ccccc--cCCcccceeecccccccc--ccc-ccc
Q 004993 369 ----VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVE--THSSI--QYLSKLVTLDMRLCKNLN--RLP-SSL 436 (720)
Q Consensus 369 ----~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~--~p~~l--~~l~~L~~L~L~~n~~~~--~lp-~~l 436 (720)
++|++|+|++|++....|. +..+++|++|++++|.+.+. .+..+ +.+++|++|++++|.+.+ .++ ..+
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 8899999998887766655 88888999999998876654 34444 788899999999887652 233 234
Q ss_pred CCCCCCcEEeccCCCCCCccc-hhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCC
Q 004993 437 CELISLQRLYLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHN 515 (720)
Q Consensus 437 ~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~ 515 (720)
..+++|+.|+|++|.+.+..| ..+..+++|+.|+|++|.+. .+|. .+. ++|+.|++++|.+++. |.
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~--------~~~--~~L~~L~Ls~N~l~~~-p~- 291 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK--------GLP--AKLSVLDLSYNRLDRN-PS- 291 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS--------SCC--SEEEEEECCSSCCCSC-CC-
T ss_pred hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh--------hcc--CCceEEECCCCCCCCC-hh-
Confidence 577899999999988777664 44666889999999998655 6664 232 7888899999998877 44
Q ss_pred ccccccccccccchhhHHH
Q 004993 516 DQYFNLSDCLKLDQNELKG 534 (720)
Q Consensus 516 l~~l~~L~~L~L~~N~l~~ 534 (720)
+..++.|+.|++++|++++
T Consensus 292 ~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTTSCEEEEEECTTCTTTC
T ss_pred HhhCCCCCEEeccCCCCCC
Confidence 7788899999999998764
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=3.7e-21 Score=214.78 Aligned_cols=227 Identities=13% Similarity=0.064 Sum_probs=189.8
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcc
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVE 359 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~ 359 (720)
.|+++++....+.+..|..+++|++|+|++|.+.+..+ ++.+++|++|++++|.++.+|.. ++|++|++++|.+.
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNIS 112 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSCCC
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC---CCcCEEECcCCcCC
Confidence 57888888888888999999999999999999887555 66799999999999998888754 89999999999999
Q ss_pred cccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccccccccccccc-CCcccceeeccccccccccccccC
Q 004993 360 QLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQ-YLSKLVTLDMRLCKNLNRLPSSLC 437 (720)
Q Consensus 360 ~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~-~l~~L~~L~L~~n~~~~~lp~~l~ 437 (720)
.++.. .+++|+.|+|++|.+....|. ++.+++|+.|++++|.+.+..|..+. .+++|+.|+|++|.+.+. |. ..
T Consensus 113 ~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~ 188 (487)
T 3oja_A 113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QV 188 (487)
T ss_dssp CEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CC
T ss_pred CCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cc
Confidence 88753 578999999999998877675 88999999999999999888888886 899999999999986554 43 34
Q ss_pred CCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccc-cCCCCCc
Q 004993 438 ELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS-AMSPHND 516 (720)
Q Consensus 438 ~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~-~~~~~~l 516 (720)
.+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|.+. .+|. .+..+++|+.|++++|.+. +.+|..+
T Consensus 189 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~--------~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT--------TCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccch--------hhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 69999999999997654 6666999999999999998765 5665 5677899999999999987 4555554
Q ss_pred ccccccccc
Q 004993 517 QYFNLSDCL 525 (720)
Q Consensus 517 ~~l~~L~~L 525 (720)
..++.+..+
T Consensus 259 ~~l~~L~~l 267 (487)
T 3oja_A 259 SKNQRVQTV 267 (487)
T ss_dssp TTCHHHHHH
T ss_pred HhCCCCcEE
Confidence 455444433
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.4e-20 Score=213.66 Aligned_cols=193 Identities=18% Similarity=0.149 Sum_probs=161.7
Q ss_pred ecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCCcc
Q 004993 282 DMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESKVE 359 (720)
Q Consensus 282 ~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~i~ 359 (720)
|.+......++... .++|++|++++|.+....+..+..+++|++|++++|.+..++.. + ++++|++|++++|.++
T Consensus 11 ~~~~~~l~~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 11 DGRSRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp ECTTSCCSSCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccccccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 44444444444433 27899999999999887777788899999999999999988753 4 8999999999999999
Q ss_pred cccCC-CCCCCCccEEecCCCcCCC-CCC-CCcCCcccceeeccccccccccc-ccccCCcccceeeccccccccccccc
Q 004993 360 QLWDG-VPNLVNLKEIDLSYSRQLK-KLP-DLSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLCKNLNRLPSS 435 (720)
Q Consensus 360 ~l~~~-~~~L~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~lp~~ 435 (720)
.++.. +..+++|++|++++|.+.. ..| .+..+++|++|++++|...+.+| ..++.+++|++|++++|.+.+..|..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 88755 9999999999999998765 334 49999999999999998667666 57999999999999999998889999
Q ss_pred cCCCCCCcEEeccCCCCCCccchhc-cCCCCCCEEcccCCcCcC
Q 004993 436 LCELISLQRLYLSGCSNLRRIPESI-INLSKLELLHLKNCSKLL 478 (720)
Q Consensus 436 l~~l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~L~~~~~l~ 478 (720)
++.+++|++|++++|.. +.+|..+ ..+++|++|++++|+..+
T Consensus 168 l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred hhccccCceEecccCcc-cccchhhHhhcccccEEEccCCcccc
Confidence 99999999999999874 4555543 568999999999987654
No 67
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=6.2e-20 Score=204.07 Aligned_cols=241 Identities=19% Similarity=0.203 Sum_probs=121.4
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCccc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQ 360 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~ 360 (720)
+|++++....+.+ +.++++|+.|++++|.+....+ +..+++|++|++++|.++.+|....+++|++|++++|.+..
T Consensus 73 L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 148 (466)
T 1o6v_A 73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 148 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECC
T ss_pred EECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCC
Confidence 4455554444333 6666666666666666555333 44466666666666666666553356666666666665554
Q ss_pred ccC--------------------CCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccce
Q 004993 361 LWD--------------------GVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVT 420 (720)
Q Consensus 361 l~~--------------------~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 420 (720)
++. .+..+++|++|++++|.+ ..++.+..+++|++|++++|.+.+..| ++.+++|+.
T Consensus 149 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 225 (466)
T 1o6v_A 149 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDE 225 (466)
T ss_dssp CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC-CCChhhccCCCCCEEEecCCccccccc--ccccCCCCE
Confidence 432 134445555555555543 223345555555555555554443322 444555555
Q ss_pred eeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCC-CCCCCccEEec-------
Q 004993 421 LDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP-ELPCNLFSVGV------- 492 (720)
Q Consensus 421 L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~lp~~L~~L~~------- 492 (720)
|++++|.+.+ ++ .+..+++|+.|++++|.+.+..| +..+++|+.|++++|......+ ...++|+.|.+
T Consensus 226 L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 226 LSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 301 (466)
T ss_dssp EECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC
T ss_pred EECCCCCccc-ch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccC
Confidence 5555554322 22 34455555555555554433322 4555555555555554332111 01123333332
Q ss_pred ----cCCCccccccCcccccccCCCCCccccccccccccchhhHHH
Q 004993 493 ----RRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 534 (720)
Q Consensus 493 ----~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 534 (720)
.++++|+.|++++|.+++..| +..++.|+.|++++|.+++
T Consensus 302 ~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 302 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred chhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 223455555555555554443 3345555555555555544
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=5.1e-20 Score=204.75 Aligned_cols=195 Identities=22% Similarity=0.197 Sum_probs=109.5
Q ss_pred ccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccc
Q 004993 323 FTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKAC 402 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~ 402 (720)
+++|++|++++|.+..++....+++|++|++++|.+..++. +..+++|++|++++|.+. .++.+..+++|+.|++++|
T Consensus 176 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANN 253 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSS
T ss_pred CCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCC
Confidence 45555555555555555443355555555555555554433 444555555555555432 2344555555666666555
Q ss_pred cccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCC
Q 004993 403 SSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE 482 (720)
Q Consensus 403 ~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 482 (720)
.+.+..+ +..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.+..| +..+++|+.|++++|+..+..|
T Consensus 254 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 254 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp CCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-
T ss_pred ccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-
Confidence 5443322 5555666666666554433222 4555666666666655433222 4556666666666654433221
Q ss_pred CCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHHHHH
Q 004993 483 LPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAE 537 (720)
Q Consensus 483 lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 537 (720)
+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..|
T Consensus 327 ---------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 327 ---------VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp ---------GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred ---------hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 34567788888888877765 346677888888888888777655
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=2e-21 Score=207.94 Aligned_cols=234 Identities=17% Similarity=0.116 Sum_probs=175.3
Q ss_pred CCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCCccccc-CCCCCCCCccEEe
Q 004993 299 MPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESKVEQLW-DGVPNLVNLKEID 375 (720)
Q Consensus 299 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~i~~l~-~~~~~L~~L~~L~ 375 (720)
++.....+.+++.+.. .+....++|++|++++|.++.+|.. + ++++|++|++++|+++.++ ..+..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~---iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS---IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSS---CCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccc---ccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 4444556777776655 2333467999999999999999873 4 8999999999999999875 5699999999999
Q ss_pred cCCCcCCCCCCC-CcCCcccceeecccccccccccc--cccCCcccceeeccccccccc-cccccCCCCCCcEEeccCCC
Q 004993 376 LSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHS--SIQYLSKLVTLDMRLCKNLNR-LPSSLCELISLQRLYLSGCS 451 (720)
Q Consensus 376 Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~--~l~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~ 451 (720)
+++|.+....+. +..+++|++|++++|.+.. +|. .+..+++|++|++++|...+. .|..+..+++|++|++++|.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999987655545 8899999999999997664 554 789999999999999854444 46678899999999999999
Q ss_pred CCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccc---ccc-----cc
Q 004993 452 NLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQY---FNL-----SD 523 (720)
Q Consensus 452 ~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~---l~~-----L~ 523 (720)
+.+..|..+..+++|++|++++|.. ..+|.. .+..+++|+.|++++|.+++..+..+.. ... +.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~-------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQH-ILLLEI-------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCS-TTHHHH-------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred cCccCHHHHhccccCCeecCCCCcc-ccchhh-------hhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 8888899999999999999999875 444431 2445788888888888887765443221 222 33
Q ss_pred ccccchhhHHHHHHHHHHHHHH
Q 004993 524 CLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 524 ~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
.+++++|.+. .+|..+..++.
T Consensus 258 ~~~l~~~~l~-~l~~~l~~l~~ 278 (353)
T 2z80_A 258 NVKITDESLF-QVMKLLNQISG 278 (353)
T ss_dssp SCBCCHHHHH-HHHHHHHTCTT
T ss_pred cccccCcchh-hhHHHHhcccC
Confidence 3444555444 24555555544
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=3.9e-20 Score=190.79 Aligned_cols=202 Identities=16% Similarity=0.094 Sum_probs=108.1
Q ss_pred cCceEEEecCCCCCCCCC-CC-CCCCccEEEccCCCcccccC-CCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeec
Q 004993 324 TELRYLYWDGYPSKSLPP-VI-RLDTLISLQLRESKVEQLWD-GVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLL 399 (720)
Q Consensus 324 ~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~L~~n~i~~l~~-~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L 399 (720)
++|++|++++|.++.++. .+ ++++|++|++++|.++.++. .+..+++|++|++++|.+....+. +..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 445555555555555544 22 45555555555555555442 455555666666665554444433 555566666666
Q ss_pred ccccccccccccccCCcccceeecccccccc-ccccccCCCCCCcEEeccCCCCCCccchhccCCCCCC----EEcccCC
Q 004993 400 KACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLE----LLHLKNC 474 (720)
Q Consensus 400 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~----~L~L~~~ 474 (720)
++|.+.+..+..++.+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 6555544444445566666666666555443 2455555666666666666654444444444444444 5666665
Q ss_pred cCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHH
Q 004993 475 SKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 534 (720)
Q Consensus 475 ~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 534 (720)
......+. .....+|+.|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 188 ~l~~~~~~---------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPG---------AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTT---------SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCcc---------ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 44322221 2222356666666666665555555556666666666665553
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=6.5e-19 Score=181.03 Aligned_cols=201 Identities=16% Similarity=0.094 Sum_probs=168.1
Q ss_pred cCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccC-CCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccc
Q 004993 324 TELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWD-GVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKA 401 (720)
Q Consensus 324 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~ 401 (720)
..++.++++++.++.+|..+. ++|++|++++|+++.++. .+..+++|++|++++|.+....+. +..+++|++|++++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 467889999999999997653 689999999999998874 688999999999999987655554 68899999999999
Q ss_pred ccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCC
Q 004993 402 CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP 481 (720)
Q Consensus 402 ~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp 481 (720)
|.+....+..+..+++|++|++++|.+.+..|..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|......+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 98776666678899999999999998777777778899999999999997665555568899999999999986654433
Q ss_pred CCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHH
Q 004993 482 ELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELK 533 (720)
Q Consensus 482 ~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 533 (720)
. .+.++++|+.|++++|.+++..+..+..++.|+.|++++|++.
T Consensus 175 ~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 175 G--------AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp T--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred h--------HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 3 4677899999999999998887777888999999999999864
No 72
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=2.5e-20 Score=215.08 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=116.0
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCCcccccC-CCCCCCCccEEec
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESKVEQLWD-GVPNLVNLKEIDL 376 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~i~~l~~-~~~~L~~L~~L~L 376 (720)
++++.|+|++|.+..+.+..+..+++|++|++++|.++.+|.. + ++++|++|+|++|+++.+|. .+.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4799999999999997777888899999999999999999875 4 79999999999999999985 5899999999999
Q ss_pred CCCcCCCCCCC-CcCCcccceeecccccccc-cccccccCCcccceeecccccccc
Q 004993 377 SYSRQLKKLPD-LSQARNLENLLLKACSSLV-ETHSSIQYLSKLVTLDMRLCKNLN 430 (720)
Q Consensus 377 s~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~L~~n~~~~ 430 (720)
++|++....+. ++.+++|++|++++|.+.. ..|..++.+++|++|++++|.+.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 99987766555 8999999999999998765 467888999999999999886533
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=3e-19 Score=184.12 Aligned_cols=203 Identities=17% Similarity=0.089 Sum_probs=169.0
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCCccccc-CCCCCCCCccEEec
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESKVEQLW-DGVPNLVNLKEIDL 376 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~i~~l~-~~~~~L~~L~~L~L 376 (720)
++|+.|++++|.+....+..+..+++|++|++++|.+..++.. + ++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 5799999999999886666777799999999999999988874 3 7999999999999999876 67899999999999
Q ss_pred CCCcCCCCCCC-CcCCcccceeecccccccc-cccccccCCcccceeeccccccccccccccCCCCCCc----EEeccCC
Q 004993 377 SYSRQLKKLPD-LSQARNLENLLLKACSSLV-ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ----RLYLSGC 450 (720)
Q Consensus 377 s~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~----~L~L~~n 450 (720)
++|.+....+. +..+++|++|++++|.+.. .+|..++.+++|+.|++++|.+.+..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99987776663 8999999999999998766 3688999999999999999987776666676666666 8999998
Q ss_pred CCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccC
Q 004993 451 SNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAM 511 (720)
Q Consensus 451 ~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~ 511 (720)
.+. .+|.......+|+.|++++|... .+|.. .+.++++|+.|++++|.+...
T Consensus 188 ~l~-~~~~~~~~~~~L~~L~L~~n~l~-~~~~~-------~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 188 PMN-FIQPGAFKEIRLKELALDTNQLK-SVPDG-------IFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCC-EECTTSSCSCCEEEEECCSSCCS-CCCTT-------TTTTCCSCCEEECCSSCBCCC
T ss_pred ccc-ccCccccCCCcccEEECCCCcee-ecCHh-------HhcccccccEEEccCCccccc
Confidence 755 45555555668999999998755 44431 457889999999999998753
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=4.9e-20 Score=193.65 Aligned_cols=200 Identities=17% Similarity=0.073 Sum_probs=167.0
Q ss_pred CCCCccEEEeeCCCCcccccCCc--ccccCceEEEecCCCCCCCCCCC-CC-----CCccEEEccCCCccccc-CCCCCC
Q 004993 298 KMPRLRFLKFHGENKFKISHFEG--EAFTELRYLYWDGYPSKSLPPVI-RL-----DTLISLQLRESKVEQLW-DGVPNL 368 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~lp~~~-~l-----~~L~~L~L~~n~i~~l~-~~~~~L 368 (720)
++++|+.|++++|.+.+..+... ..+++|++|++++|.+..+|..+ .+ ++|++|++++|++..++ ..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 79999999999999987666654 67999999999999999887655 44 89999999999999887 789999
Q ss_pred CCccEEecCCCcCCCCC---CCC--cCCcccceeecccccccc--ccc-ccccCCcccceeeccccccccccc-cccCCC
Q 004993 369 VNLKEIDLSYSRQLKKL---PDL--SQARNLENLLLKACSSLV--ETH-SSIQYLSKLVTLDMRLCKNLNRLP-SSLCEL 439 (720)
Q Consensus 369 ~~L~~L~Ls~n~~~~~~---p~l--~~l~~L~~L~L~~~~~~~--~~p-~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l 439 (720)
++|++|++++|++.+.. +.+ ..+++|++|++++|.+.+ .++ ..+..+++|+.|++++|.+.+..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 99999999999876542 233 889999999999998763 233 334678999999999998877665 456678
Q ss_pred CCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCccccccc
Q 004993 440 ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 510 (720)
Q Consensus 440 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~ 510 (720)
++|++|+|++|.+. .+|..+. ++|+.|+|++|++.+ +| .+..+++|+.|++++|.+++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~p---------~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR-NP---------SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS-CC---------CTTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC-Ch---------hHhhCCCCCEEeccCCCCCC
Confidence 99999999999765 8888776 899999999987654 45 36678999999999999875
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=6.1e-19 Score=183.12 Aligned_cols=199 Identities=16% Similarity=0.084 Sum_probs=103.8
Q ss_pred hCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCCcccccCCCCCCCCccE
Q 004993 296 FKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESKVEQLWDGVPNLVNLKE 373 (720)
Q Consensus 296 f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~ 373 (720)
+.++++++.++++++.+... +.+.+++++.|++++|.++.++.. + .+++|++|++++|.++.++.. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i---p~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL---PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC---CSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcC---CCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 45566666666666555431 112235566666666665555432 2 556666666666666655443 45566666
Q ss_pred EecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCC
Q 004993 374 IDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSN 452 (720)
Q Consensus 374 L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~ 452 (720)
|++++|.+. .+|. +..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 666666543 3333 55555666666665555444444555555666666655554443334445555566666655544
Q ss_pred CCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCccccc
Q 004993 453 LRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLF 508 (720)
Q Consensus 453 ~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l 508 (720)
.+..+..+..+++|+.|+|++|++. .+|. .+..+++|+.+++++|.+
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~--------~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPK--------GFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCT--------TTTTTCCCSEEECCSCCB
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccCh--------hhcccccCCeEEeCCCCc
Confidence 3322233445555555555555332 3443 333444555555555544
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.3e-18 Score=180.50 Aligned_cols=193 Identities=21% Similarity=0.133 Sum_probs=165.2
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCccc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQ 360 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~ 360 (720)
++++.+....++... .++++.|++++|.+....+..+..+++|++|++++|.++.+|....+++|++|++++|+++.
T Consensus 15 l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~ 91 (290)
T 1p9a_G 15 VNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91 (290)
T ss_dssp EECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS
T ss_pred EECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCc
Confidence 455555444444433 26899999999999887777777899999999999999999888889999999999999999
Q ss_pred ccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCC
Q 004993 361 LWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCEL 439 (720)
Q Consensus 361 l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l 439 (720)
+|..+..+++|++|++++|++....|. +..+++|+.|++++|.+....+..+..+++|+.|+|++|.+....+..+..+
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 171 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence 999999999999999999998776665 9999999999999998887666778899999999999998665444556789
Q ss_pred CCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCc
Q 004993 440 ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL 477 (720)
Q Consensus 440 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l 477 (720)
++|+.|+|++|. +..+|..+..+++|+.|+|++|+..
T Consensus 172 ~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 172 ENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCcc
Confidence 999999999987 4588999999999999999998653
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=6.7e-19 Score=184.54 Aligned_cols=195 Identities=18% Similarity=0.194 Sum_probs=133.4
Q ss_pred CCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEec
Q 004993 297 KKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDL 376 (720)
Q Consensus 297 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~L 376 (720)
..+++|+.|++++|.+.... ....+++|++|++++|.+..++....+++|++|++++|.++.++ .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 45677888888887766532 34457788888888888777777347778888888888777765 5777778888888
Q ss_pred CCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCcc
Q 004993 377 SYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRI 456 (720)
Q Consensus 377 s~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~l 456 (720)
++|.+.. ++.+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+.+ +
T Consensus 115 ~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~ 188 (308)
T 1h6u_A 115 TSTQITD-VTPLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-I 188 (308)
T ss_dssp TTSCCCC-CGGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C
T ss_pred CCCCCCC-chhhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-C
Confidence 8776543 45577777788888877765543 22 6777777777777775443 333 6677777777777776443 3
Q ss_pred chhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccC
Q 004993 457 PESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAM 511 (720)
Q Consensus 457 p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~ 511 (720)
|. +..+++|++|++++|+.. .++ .+..+++|+.|++++|.+++.
T Consensus 189 ~~-l~~l~~L~~L~L~~N~l~-~~~---------~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKNNQIS-DVS---------PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GG-GGGCTTCCEEECTTSCCC-BCG---------GGTTCTTCCEEEEEEEEEECC
T ss_pred hh-hcCCCCCCEEEccCCccC-ccc---------cccCCCCCCEEEccCCeeecC
Confidence 33 667777777777777543 232 246667777777777777553
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=7.8e-18 Score=186.03 Aligned_cols=212 Identities=25% Similarity=0.192 Sum_probs=132.3
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCC
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYS 379 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n 379 (720)
++|++|++++|.+.. .+ .++.+++|++|++++|.++.+|... .+|++|++++|+++.+| .+..+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 466666666666655 22 3445666666666666666665532 46666666666666665 4666666666666666
Q ss_pred cCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchh
Q 004993 380 RQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPES 459 (720)
Q Consensus 380 ~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~ 459 (720)
.+.+ +|.. .++|++|++++|.+. .+| .++.+++|+.|++++|.+. .+|. .+++|+.|++++|.+.+ +|..
T Consensus 206 ~l~~-l~~~--~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~---~~~~L~~L~l~~N~l~~-l~~~ 275 (454)
T 1jl5_A 206 SLKK-LPDL--PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLTD-LPEL 275 (454)
T ss_dssp CCSS-CCCC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCSC-CCCC
T ss_pred cCCc-CCCC--cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc---cccccCEEECCCCcccc-cCcc
Confidence 5443 3332 146666677666544 455 3667777777777766543 3443 23667777777765433 5542
Q ss_pred ccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCC---------CccccccCcccccccCCCCCccccccccccccchh
Q 004993 460 IINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC---------TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQN 530 (720)
Q Consensus 460 l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~---------~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N 530 (720)
+++|+.|++++|.. ..+|..|++|+.|.++++ ++|+.|++++|.+++ +|.. ++.|+.|++++|
T Consensus 276 ---~~~L~~L~ls~N~l-~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 276 ---PQSLTFLDVSENIF-SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN 347 (454)
T ss_dssp ---CTTCCEEECCSSCC-SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred ---cCcCCEEECcCCcc-CcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence 36777777777653 445666677777766554 477788888887776 3332 467788888888
Q ss_pred hHHH
Q 004993 531 ELKG 534 (720)
Q Consensus 531 ~l~~ 534 (720)
.+++
T Consensus 348 ~l~~ 351 (454)
T 1jl5_A 348 HLAE 351 (454)
T ss_dssp CCSC
T ss_pred cccc
Confidence 7764
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.6e-18 Score=181.70 Aligned_cols=194 Identities=20% Similarity=0.206 Sum_probs=155.9
Q ss_pred ccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecc
Q 004993 321 EAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLK 400 (720)
Q Consensus 321 ~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~ 400 (720)
..+++|++|++++|.+..+|....+++|++|++++|.+..++. +..+++|++|++++|.+. .++.+..+++|+.|+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEECT
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-CchhhcCCCCCCEEECC
Confidence 3488899999999998888865588999999999999988877 888999999999998754 45678889999999999
Q ss_pred cccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcC
Q 004993 401 ACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSL 480 (720)
Q Consensus 401 ~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l 480 (720)
+|.+.. ++ .+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.+ +|. +..+++|+.|++++|... .+
T Consensus 116 ~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~ 188 (308)
T 1h6u_A 116 STQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS-DI 188 (308)
T ss_dssp TSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CC
T ss_pred CCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC-cC
Confidence 987655 44 388899999999998875543 33 7788999999999986554 544 888999999999998654 33
Q ss_pred CCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHH
Q 004993 481 PELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 534 (720)
Q Consensus 481 p~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 534 (720)
+ .+.++++|+.|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 189 ~---------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 S---------PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G---------GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred h---------hhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 3 26778889999999998887664 6788889999999998865
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=2.8e-18 Score=174.21 Aligned_cols=178 Identities=17% Similarity=0.127 Sum_probs=122.2
Q ss_pred cCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccC-CCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccc
Q 004993 324 TELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWD-GVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKA 401 (720)
Q Consensus 324 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~ 401 (720)
...+.++++++.++.+|..+. ++|+.|++++|++..++. .+..+++|++|+|++|.+....+. +..+++|++|++++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 456678888888888887653 577888888888876653 577778888888888776665555 67777777777777
Q ss_pred ccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCC
Q 004993 402 CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP 481 (720)
Q Consensus 402 ~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp 481 (720)
|.+....+..+..+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|++....+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 77665555666777777777777776554444455677777777777776554444456777777777777775554333
Q ss_pred CCCCCccEEeccCCCccccccCccccccc
Q 004993 482 ELPCNLFSVGVRRCTSLEALSSFSFLFSA 510 (720)
Q Consensus 482 ~lp~~L~~L~~~~~~~L~~L~l~~N~l~~ 510 (720)
. .+.++++|+.|++++|.+..
T Consensus 173 ~--------~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 173 G--------AFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp T--------TTTTCTTCCEEECCSCCBCT
T ss_pred H--------HHhCCCCCCEEEeeCCceeC
Confidence 3 35556667777777666653
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=4e-18 Score=171.74 Aligned_cols=175 Identities=15% Similarity=0.095 Sum_probs=114.7
Q ss_pred CccEEEeeCCCCcccccCCcccccCceEEEecCCC-CCCCCCC-C-CCCCccEEEccC-CCccccc-CCCCCCCCccEEe
Q 004993 301 RLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYP-SKSLPPV-I-RLDTLISLQLRE-SKVEQLW-DGVPNLVNLKEID 375 (720)
Q Consensus 301 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~-~-~l~~L~~L~L~~-n~i~~l~-~~~~~L~~L~~L~ 375 (720)
+|+.|++++|.+....+..+..+++|++|++++|. ++.+|.. + ++++|++|++++ |+++.++ ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776555556667777777777776 7777653 3 677777777777 7777765 3466777777777
Q ss_pred cCCCcCCCCCCCCcCCcccc---eeecccc-cccccccccccCCcccc-eeeccccccccccccccCCCCCCcEEeccCC
Q 004993 376 LSYSRQLKKLPDLSQARNLE---NLLLKAC-SSLVETHSSIQYLSKLV-TLDMRLCKNLNRLPSSLCELISLQRLYLSGC 450 (720)
Q Consensus 376 Ls~n~~~~~~p~l~~l~~L~---~L~L~~~-~~~~~~p~~l~~l~~L~-~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n 450 (720)
+++|.+.. +|.+..+++|+ .|++++| .+....+..+..+++|+ .|++++|.+. .+|......++|+.|++++|
T Consensus 112 l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCC
Confidence 77776544 55566666666 7777777 44444444567777777 7777766544 55544434467777777776
Q ss_pred C-CCCccchhccCC-CCCCEEcccCCcCc
Q 004993 451 S-NLRRIPESIINL-SKLELLHLKNCSKL 477 (720)
Q Consensus 451 ~-~~~~lp~~l~~l-~~L~~L~L~~~~~l 477 (720)
. +.+..+..+..+ ++|+.|++++|+..
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccc
Confidence 4 333334456666 77777777776543
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=9.6e-18 Score=170.28 Aligned_cols=178 Identities=16% Similarity=0.111 Sum_probs=113.7
Q ss_pred CccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccc
Q 004993 347 TLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRL 425 (720)
Q Consensus 347 ~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 425 (720)
..++++++++.++.+|..+. ++|+.|+|++|.+....+. +..+++|++|++++|.+.+..+..+..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45566777777776666554 4667777777766555554 66677777777777666665555666677777777776
Q ss_pred cccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcc
Q 004993 426 CKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFS 505 (720)
Q Consensus 426 n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~ 505 (720)
|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+....+. .+.++++|+.|++++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG--------AFDKLTNLQTLSLST 164 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCS
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH--------HcCcCcCCCEEECCC
Confidence 665555555566667777777777655544444456667777777777654433332 355666677777777
Q ss_pred cccccCCCCCccccccccccccchhhHHH
Q 004993 506 FLFSAMSPHNDQYFNLSDCLKLDQNELKG 534 (720)
Q Consensus 506 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 534 (720)
|.+++..+..+..++.|+.|++++|.+++
T Consensus 165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 165 NQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 77766666666666677777777776654
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=2.1e-20 Score=202.68 Aligned_cols=238 Identities=12% Similarity=0.029 Sum_probs=185.4
Q ss_pred CchhhCCCCCccEEEeeCCCCcccccC----CcccccCceEEEecCCCCCCCCC----C--------CCCCCccEEEccC
Q 004993 292 NSSTFKKMPRLRFLKFHGENKFKISHF----EGEAFTELRYLYWDGYPSKSLPP----V--------IRLDTLISLQLRE 355 (720)
Q Consensus 292 ~~~~f~~l~~L~~L~L~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~lp~----~--------~~l~~L~~L~L~~ 355 (720)
....+..+++|+.|++++|.+...... .+..+++|++|++++|.+..+.. . ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 345677889999999999987764332 24458899999999987665432 2 2679999999999
Q ss_pred CCccc-----ccCCCCCCCCccEEecCCCcCCCCCCC-----CcCC---------cccceeeccccccc-cccc---ccc
Q 004993 356 SKVEQ-----LWDGVPNLVNLKEIDLSYSRQLKKLPD-----LSQA---------RNLENLLLKACSSL-VETH---SSI 412 (720)
Q Consensus 356 n~i~~-----l~~~~~~L~~L~~L~Ls~n~~~~~~p~-----l~~l---------~~L~~L~L~~~~~~-~~~p---~~l 412 (720)
|.+.. +|..+..+++|++|+|++|.+....+. +..+ ++|++|++++|.+. ..++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99986 677888999999999999986433222 3333 89999999999876 3344 467
Q ss_pred cCCcccceeecccccccc-----ccccccCCCCCCcEEeccCCCCC----CccchhccCCCCCCEEcccCCcCcCc----
Q 004993 413 QYLSKLVTLDMRLCKNLN-----RLPSSLCELISLQRLYLSGCSNL----RRIPESIINLSKLELLHLKNCSKLLS---- 479 (720)
Q Consensus 413 ~~l~~L~~L~L~~n~~~~-----~lp~~l~~l~~L~~L~L~~n~~~----~~lp~~l~~l~~L~~L~L~~~~~l~~---- 479 (720)
..+++|+.|++++|.+.. ..|..+..+++|+.|+|++|.+. ..+|..+..+++|+.|+|++|.+...
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 788999999999997652 34547889999999999999864 67888999999999999999976543
Q ss_pred CCCCCCCccEEec--cCCCccccccCccccccc----CCCCCc-cccccccccccchhhHHHHHH
Q 004993 480 LPELPCNLFSVGV--RRCTSLEALSSFSFLFSA----MSPHND-QYFNLSDCLKLDQNELKGIAE 537 (720)
Q Consensus 480 lp~lp~~L~~L~~--~~~~~L~~L~l~~N~l~~----~~~~~l-~~l~~L~~L~L~~N~l~~~~~ 537 (720)
+|. .+ ..+++|+.|++++|.+++ .+|..+ ..++.|+.|++++|.+++..+
T Consensus 264 l~~--------~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 264 VVD--------AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHH--------HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHH--------HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 333 33 448999999999999987 366555 557999999999999987653
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=181.42 Aligned_cols=220 Identities=19% Similarity=0.081 Sum_probs=141.5
Q ss_pred CCccEEEeeCCCCcccccC---CcccccCceEEEecCCCCCC-CCCC---CCCCCccEEEccCCCcccc-c----CCCCC
Q 004993 300 PRLRFLKFHGENKFKISHF---EGEAFTELRYLYWDGYPSKS-LPPV---IRLDTLISLQLRESKVEQL-W----DGVPN 367 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~-lp~~---~~l~~L~~L~L~~n~i~~l-~----~~~~~ 367 (720)
..++.|.+.++.+...... ....+++|++|++++|.+.. .|.. ..+++|++|++++|.+... + ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466667666554321111 01114567777777777553 3433 3577777777777777642 1 22346
Q ss_pred CCCccEEecCCCcCCCCCCC-CcCCcccceeeccccccccc--cc--ccccCCcccceeecccccccccccc----ccCC
Q 004993 368 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVE--TH--SSIQYLSKLVTLDMRLCKNLNRLPS----SLCE 438 (720)
Q Consensus 368 L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~--~p--~~l~~l~~L~~L~L~~n~~~~~lp~----~l~~ 438 (720)
+++|++|+|++|.+....|. ++.+++|++|++++|.+.+. ++ ..++.+++|++|+|++|.+. .+|. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 77888888888877665554 77778888888888765542 22 22367778888888877653 3332 2456
Q ss_pred CCCCcEEeccCCCCCCccchhccCC---CCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCC
Q 004993 439 LISLQRLYLSGCSNLRRIPESIINL---SKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHN 515 (720)
Q Consensus 439 l~~L~~L~L~~n~~~~~lp~~l~~l---~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~ 515 (720)
+++|++|+|++|.+.+..|..+..+ ++|++|+|++|++. .+|. .+ .++|+.|++++|.+++...
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~--------~~--~~~L~~L~Ls~N~l~~~~~-- 289 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK--------GL--PAKLRVLDLSSNRLNRAPQ-- 289 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS--------CC--CSCCSCEECCSCCCCSCCC--
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh--------hh--cCCCCEEECCCCcCCCCch--
Confidence 7788888888887766667666665 58888888887655 5554 22 2678888888888876422
Q ss_pred ccccccccccccchhhHH
Q 004993 516 DQYFNLSDCLKLDQNELK 533 (720)
Q Consensus 516 l~~l~~L~~L~L~~N~l~ 533 (720)
+..++.|+.|++++|+++
T Consensus 290 ~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTSCCCCSCEECSSTTTS
T ss_pred hhhCCCccEEECcCCCCC
Confidence 456778888888888764
No 85
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=1.9e-17 Score=186.56 Aligned_cols=196 Identities=18% Similarity=0.158 Sum_probs=126.0
Q ss_pred CceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccc
Q 004993 325 ELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSS 404 (720)
Q Consensus 325 ~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~ 404 (720)
+|+.|++++|.++.+|..+ +++|++|+|++|+++.+| ..+++|++|+|++|.+.. +|.+.. +|+.|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCcC
Confidence 4555555555555555543 255666666666666665 335666666666665544 444333 666666666655
Q ss_pred cccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCC
Q 004993 405 LVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP 484 (720)
Q Consensus 405 ~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp 484 (720)
.+ +|. .+++|+.|+|++|.+.+ +|. .+++|+.|+|++|.+.+ +|. +. ++|+.|+|++|.+. .+|.++
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~~~ 199 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPAVP 199 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCCCC
T ss_pred CC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhhHH
Confidence 44 454 56777777777776443 554 46778888888876444 666 54 78888888887544 555432
Q ss_pred CCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhhHHHHHHHHHHHHHH
Q 004993 485 CNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 545 (720)
Q Consensus 485 ~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 545 (720)
.+| ...++.|+.|++++|.++. +|..+..+++|+.|+|++|.+++..|..++.+..
T Consensus 200 ~~L----~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 200 VRN----HHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp ------------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred Hhh----hcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 211 1223445888888888875 5666777999999999999999999999988765
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=8.3e-18 Score=176.42 Aligned_cols=199 Identities=16% Similarity=0.063 Sum_probs=161.7
Q ss_pred CCCCccEEEeeCCCCcccccCCc--ccccCceEEEecCCCCCCCCCC------CCCCCccEEEccCCCccccc-CCCCCC
Q 004993 298 KMPRLRFLKFHGENKFKISHFEG--EAFTELRYLYWDGYPSKSLPPV------IRLDTLISLQLRESKVEQLW-DGVPNL 368 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~lp~~------~~l~~L~~L~L~~n~i~~l~-~~~~~L 368 (720)
.+++|+.|++++|.+.+..+... ..+++|++|++++|.+...... ..+++|++|++++|++..++ ..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45779999999999887777666 6799999999999998763321 25889999999999999776 678899
Q ss_pred CCccEEecCCCcCCCC--C--CC-CcCCcccceeecccccccccccc----cccCCcccceeeccccccccccccccCCC
Q 004993 369 VNLKEIDLSYSRQLKK--L--PD-LSQARNLENLLLKACSSLVETHS----SIQYLSKLVTLDMRLCKNLNRLPSSLCEL 439 (720)
Q Consensus 369 ~~L~~L~Ls~n~~~~~--~--p~-l~~l~~L~~L~L~~~~~~~~~p~----~l~~l~~L~~L~L~~n~~~~~lp~~l~~l 439 (720)
++|++|+|++|++.+. + +. +..+++|++|++++|.+. .++. .++.+++|++|+|++|.+.+..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 9999999999987542 2 22 478999999999999774 2332 25788999999999999888778777776
Q ss_pred ---CCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCccccccc
Q 004993 440 ---ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 510 (720)
Q Consensus 440 ---~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~ 510 (720)
++|++|+|++|.+. .+|..+. ++|+.|+|++|+.. .+| .+..+++|+.|++++|.++.
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~---------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAP---------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCC---------CTTSCCCCSCEECSSTTTSC
T ss_pred cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCc---------hhhhCCCccEEECcCCCCCC
Confidence 69999999999765 7888774 89999999998765 444 24567999999999998864
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=2.2e-17 Score=166.25 Aligned_cols=191 Identities=12% Similarity=0.048 Sum_probs=158.6
Q ss_pred EeecCCccceecCchhhCCCCCccEEEeeCCC-CcccccCCcccccCceEEEecC-CCCCCCCCCC--CCCCccEEEccC
Q 004993 280 LLDMSKVNEIHLNSSTFKKMPRLRFLKFHGEN-KFKISHFEGEAFTELRYLYWDG-YPSKSLPPVI--RLDTLISLQLRE 355 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~~~--~l~~L~~L~L~~ 355 (720)
.++++++....+++..|.++++|+.|++++|. +....+..+..+++|++|++++ |.++.+|... ++++|++|++++
T Consensus 35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~ 114 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114 (239)
T ss_dssp EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence 46666777777888899999999999999997 7776666777899999999998 9999998654 899999999999
Q ss_pred CCcccccCCCCCCCCcc---EEecCCC-cCCCCCCC-CcCCcccc-eeecccccccccccccccCCcccceeeccccc-c
Q 004993 356 SKVEQLWDGVPNLVNLK---EIDLSYS-RQLKKLPD-LSQARNLE-NLLLKACSSLVETHSSIQYLSKLVTLDMRLCK-N 428 (720)
Q Consensus 356 n~i~~l~~~~~~L~~L~---~L~Ls~n-~~~~~~p~-l~~l~~L~-~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~-~ 428 (720)
|+++.+|. +..+++|+ +|++++| .+....+. +..+++|+ .|++++|.+. .+|......++|+.|++++|+ +
T Consensus 115 n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 115 TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYL 192 (239)
T ss_dssp ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTC
T ss_pred CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCc
Confidence 99999987 88888888 9999999 65554444 89999999 9999999876 566554444899999999996 5
Q ss_pred ccccccccCCC-CCCcEEeccCCCCCCccchhccCCCCCCEEcccCCc
Q 004993 429 LNRLPSSLCEL-ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCS 475 (720)
Q Consensus 429 ~~~lp~~l~~l-~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 475 (720)
....+..+..+ ++|+.|++++|.+. .+|.. .+++|+.|++++|.
T Consensus 193 ~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred ccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 54445668889 99999999998754 56654 68899999998874
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=1.4e-19 Score=192.08 Aligned_cols=182 Identities=15% Similarity=0.151 Sum_probs=100.9
Q ss_pred chhhCCC--CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCC--CCCCC-CCCCccEEEccCCCcc-cccCCCC
Q 004993 293 SSTFKKM--PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKS--LPPVI-RLDTLISLQLRESKVE-QLWDGVP 366 (720)
Q Consensus 293 ~~~f~~l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~-~l~~L~~L~L~~n~i~-~l~~~~~ 366 (720)
+..+..+ ++++.|++++|.+....+ ....+++|++|++++|.+.. +|..+ .+++|++|++++|.+. ..+..+.
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~ 139 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT
T ss_pred HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh
Confidence 3445555 667777776666554322 23335666666666665432 33333 5566666666666655 3444555
Q ss_pred CCCCccEEecCCCcCCC--CCCC-CcCCcccceeecccc-ccccc-ccccccCCc-ccceeeccccc--cc-cccccccC
Q 004993 367 NLVNLKEIDLSYSRQLK--KLPD-LSQARNLENLLLKAC-SSLVE-THSSIQYLS-KLVTLDMRLCK--NL-NRLPSSLC 437 (720)
Q Consensus 367 ~L~~L~~L~Ls~n~~~~--~~p~-l~~l~~L~~L~L~~~-~~~~~-~p~~l~~l~-~L~~L~L~~n~--~~-~~lp~~l~ 437 (720)
.+++|++|++++|.... .++. +..+++|++|++++| .+... ++..+..++ +|++|++++|. .. +.+|..+.
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 56666666666663222 1333 455666666666666 44332 344555666 66666666663 22 34455555
Q ss_pred CCCCCcEEeccCCC-CCCccchhccCCCCCCEEcccCCc
Q 004993 438 ELISLQRLYLSGCS-NLRRIPESIINLSKLELLHLKNCS 475 (720)
Q Consensus 438 ~l~~L~~L~L~~n~-~~~~lp~~l~~l~~L~~L~L~~~~ 475 (720)
.+++|++|++++|. .....+..+..+++|+.|++++|.
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 56666666666665 334455556666666666666664
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=3.6e-17 Score=186.62 Aligned_cols=200 Identities=21% Similarity=0.142 Sum_probs=115.6
Q ss_pred CCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecC
Q 004993 298 KMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLS 377 (720)
Q Consensus 298 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls 377 (720)
.+++|++|++++|.+..+.. .+++|++|++++|.+..+|. .+++|+.|++++|+++.+|.. +++|++|+|+
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVS 149 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECc
Confidence 45667777777766554222 45666666666666666665 455666666666666655543 2555555665
Q ss_pred CCcCCCCCC---CC--------------cCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCC
Q 004993 378 YSRQLKKLP---DL--------------SQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI 440 (720)
Q Consensus 378 ~n~~~~~~p---~l--------------~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~ 440 (720)
+|.+....+ .+ ..+++|+.|++++|.+.+ +|.. +++|+.|++++|.+ ..+|. .++
T Consensus 150 ~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l-~~l~~---~~~ 221 (622)
T 3g06_A 150 DNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRL-TSLPA---LPS 221 (622)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC-SSCCC---CCT
T ss_pred CCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcc-cccCC---CCC
Confidence 554432111 12 223777888888776543 4432 35566666666543 34443 235
Q ss_pred CCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEe------------ccCCCccccccCccccc
Q 004993 441 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVG------------VRRCTSLEALSSFSFLF 508 (720)
Q Consensus 441 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~------------~~~~~~L~~L~l~~N~l 508 (720)
+|+.|+|++|.+. .+| ..+++|+.|+|++|.+ ..+|..+++|+.|. +.++++|+.|++++|.+
T Consensus 222 ~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L-~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 222 GLKELIVSGNRLT-SLP---VLPSELKELMVSGNRL-TSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCEEEccCCccC-cCC---CCCCcCcEEECCCCCC-CcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 5666666665433 344 3445566666666533 34555555555555 45568899999999999
Q ss_pred ccCCCCCcccc
Q 004993 509 SAMSPHNDQYF 519 (720)
Q Consensus 509 ~~~~~~~l~~l 519 (720)
++..|..+..+
T Consensus 297 ~~~~~~~l~~L 307 (622)
T 3g06_A 297 SERTLQALREI 307 (622)
T ss_dssp CHHHHHHHHHH
T ss_pred CCcCHHHHHhc
Confidence 88776654443
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=6.2e-17 Score=159.28 Aligned_cols=179 Identities=15% Similarity=0.098 Sum_probs=128.5
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCC-CCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccc
Q 004993 327 RYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDG-VPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSS 404 (720)
Q Consensus 327 ~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~ 404 (720)
+.++.+++.+..+|..+ .++|++|++++|+++.++.. +..+++|++|++++|++....+. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 34556666666676554 45777888888877776643 56778888888888776544444 67788888888888776
Q ss_pred cccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCC
Q 004993 405 LVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP 484 (720)
Q Consensus 405 ~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp 484 (720)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|+.|++++|+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------- 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------- 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------
Confidence 6555555778888888888888766555555777888888888888766555555778888888888887433
Q ss_pred CCccEEeccCCCccccccCcccccccCCCCCcccccc
Q 004993 485 CNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNL 521 (720)
Q Consensus 485 ~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~ 521 (720)
..|++|+.|++..|.++|.+|..++.++.
T Consensus 162 --------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 --------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34567888888888888888877665543
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=2.8e-17 Score=185.20 Aligned_cols=186 Identities=17% Similarity=0.103 Sum_probs=105.6
Q ss_pred CccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCc
Q 004993 301 RLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSR 380 (720)
Q Consensus 301 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~ 380 (720)
+|+.|++++|.+.. .+. ..+++|++|++++|.++.+| ..+++|++|++++|+++.+|. +.. +|++|+|++|.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~--~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPD--NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSC-CCS--CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCc-cCH--hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 56666666666554 222 12456666666666666666 335666666666666666665 443 66666666665
Q ss_pred CCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhc
Q 004993 381 QLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESI 460 (720)
Q Consensus 381 ~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l 460 (720)
+.. +|. .+++|+.|++++|.+.+ +|. .+++|+.|+|++|.+.+ +|. +. ++|+.|+|++|.+. .+|. +
T Consensus 132 l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~ 198 (571)
T 3cvr_A 132 LTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V 198 (571)
T ss_dssp CSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C
T ss_pred CCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H
Confidence 444 444 45666666666665543 443 45666666666665433 555 43 66666666666433 5555 4
Q ss_pred cCCCCC-------CEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccc
Q 004993 461 INLSKL-------ELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQY 518 (720)
Q Consensus 461 ~~l~~L-------~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~ 518 (720)
.. +| +.|+|++|.+. .+|. .+..+++|+.|++++|.+++..|..+..
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~-~lp~--------~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRIT-HIPE--------NILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C----------CCEEEECCSSCCC-CCCG--------GGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcce-ecCH--------HHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 33 45 66666665433 4554 4445666666666666666655554433
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=6.9e-17 Score=167.71 Aligned_cols=170 Identities=21% Similarity=0.204 Sum_probs=78.4
Q ss_pred ccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccc
Q 004993 323 FTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKAC 402 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~ 402 (720)
+++|++|++++|.+..+|....+++|++|++++|+++.++. +..+++|++|++++|.+. .+|.+..+++|++|++++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGGGGTTCTTCCEEECTTS
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC-CChhhccCCCCCEEECCCC
Confidence 33444444444444444332244444444444444444433 444444455555444422 2333444455555555544
Q ss_pred cccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCC
Q 004993 403 SSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE 482 (720)
Q Consensus 403 ~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 482 (720)
.+.. + +.+..+++|+.|++++|.+.+. ..++.+++|+.|++++|.+.+..| +..+++|+.|++++|... .+|
T Consensus 123 ~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~l~- 194 (291)
T 1h6t_A 123 GISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR- 194 (291)
T ss_dssp CCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-
T ss_pred cCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC-CCh-
Confidence 4332 1 2344555555555555543322 234455555555555554333222 555555555555555332 222
Q ss_pred CCCCccEEeccCCCccccccCccccccc
Q 004993 483 LPCNLFSVGVRRCTSLEALSSFSFLFSA 510 (720)
Q Consensus 483 lp~~L~~L~~~~~~~L~~L~l~~N~l~~ 510 (720)
.+.++++|+.|++++|.++.
T Consensus 195 --------~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 195 --------ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --------GGTTCTTCSEEEEEEEEEEC
T ss_pred --------hhccCCCCCEEECcCCcccC
Confidence 24445555555555555544
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=2e-18 Score=183.16 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=174.4
Q ss_pred CccEEEeeCCCCcccccCCcccc--cCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCccc--ccCCCCCCCCccEEe
Q 004993 301 RLRFLKFHGENKFKISHFEGEAF--TELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKVEQ--LWDGVPNLVNLKEID 375 (720)
Q Consensus 301 ~L~~L~L~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i~~--l~~~~~~L~~L~~L~ 375 (720)
.++.++++++.+.. .....+ ++++.|++++|.+...+... .+++|++|++++|.+.. ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 47788888876542 222334 89999999999977665544 89999999999999873 777889999999999
Q ss_pred cCCCcCCCCCCC-CcCCcccceeeccccc-ccc-cccccccCCcccceeecccc-ccccc-cccccCCCC-CCcEEeccC
Q 004993 376 LSYSRQLKKLPD-LSQARNLENLLLKACS-SLV-ETHSSIQYLSKLVTLDMRLC-KNLNR-LPSSLCELI-SLQRLYLSG 449 (720)
Q Consensus 376 Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~-~~~-~~p~~l~~l~~L~~L~L~~n-~~~~~-lp~~l~~l~-~L~~L~L~~ 449 (720)
+++|.+....+. ++.+++|++|++++|. +.. .++..+..+++|++|++++| .+... ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 999987655555 7889999999999994 444 36777889999999999999 65543 677788899 999999999
Q ss_pred CC--CC-CccchhccCCCCCCEEcccCCcC-cCcCCCCCCCccEEeccCCCccccccCcccc-cccCCCCCccccccccc
Q 004993 450 CS--NL-RRIPESIINLSKLELLHLKNCSK-LLSLPELPCNLFSVGVRRCTSLEALSSFSFL-FSAMSPHNDQYFNLSDC 524 (720)
Q Consensus 450 n~--~~-~~lp~~l~~l~~L~~L~L~~~~~-l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~-l~~~~~~~l~~l~~L~~ 524 (720)
|. .. +.+|..+..+++|+.|++++|.. ....+. .+.++++|+.|++++|. +.......+..+++|+.
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG--------GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH--------HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 94 33 56788888999999999999984 334444 56778999999998884 32222225678899999
Q ss_pred cccchhhHH
Q 004993 525 LKLDQNELK 533 (720)
Q Consensus 525 L~L~~N~l~ 533 (720)
|++++| ++
T Consensus 277 L~l~~~-i~ 284 (336)
T 2ast_B 277 LQVFGI-VP 284 (336)
T ss_dssp EECTTS-SC
T ss_pred EeccCc-cC
Confidence 999998 43
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=8.8e-19 Score=188.10 Aligned_cols=257 Identities=12% Similarity=0.024 Sum_probs=179.7
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCccccc----CCccccc-CceEEEecCCCCCCCCCC-C-C-----CCCc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISH----FEGEAFT-ELRYLYWDGYPSKSLPPV-I-R-----LDTL 348 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~lp~~-~-~-----l~~L 348 (720)
++++.+......+..+...++|+.|++++|.+..... ..+..++ +|++|++++|.++..... + . .++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4556665555556666677779999999998876544 3333466 899999999998766432 2 2 2899
Q ss_pred cEEEccCCCcccccC-----CCCCC-CCccEEecCCCcCCCCCCC-----CcC-Ccccceeecccccccc----cccccc
Q 004993 349 ISLQLRESKVEQLWD-----GVPNL-VNLKEIDLSYSRQLKKLPD-----LSQ-ARNLENLLLKACSSLV----ETHSSI 412 (720)
Q Consensus 349 ~~L~L~~n~i~~l~~-----~~~~L-~~L~~L~Ls~n~~~~~~p~-----l~~-l~~L~~L~L~~~~~~~----~~p~~l 412 (720)
++|+|++|.++..+. .+..+ ++|++|+|++|.+....+. +.. .++|++|++++|.+.. .++..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999999985542 24455 8999999999987555442 233 3699999999998774 344455
Q ss_pred cCCc-ccceeeccccccccccccc----cCCC-CCCcEEeccCCCCCC----ccchhccCC-CCCCEEcccCCcCcCcCC
Q 004993 413 QYLS-KLVTLDMRLCKNLNRLPSS----LCEL-ISLQRLYLSGCSNLR----RIPESIINL-SKLELLHLKNCSKLLSLP 481 (720)
Q Consensus 413 ~~l~-~L~~L~L~~n~~~~~lp~~----l~~l-~~L~~L~L~~n~~~~----~lp~~l~~l-~~L~~L~L~~~~~l~~lp 481 (720)
..++ +|++|+|++|.+....+.. +... ++|++|+|++|.+.. .++..+..+ ++|++|+|++|.....-+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 6665 9999999999876665543 3344 599999999997654 266666664 599999999987554322
Q ss_pred CCCCCccEEeccCCCccccccCcccccccCC-------CCCccccccccccccchhhHHHHHHHHHH
Q 004993 482 ELPCNLFSVGVRRCTSLEALSSFSFLFSAMS-------PHNDQYFNLSDCLKLDQNELKGIAEDALQ 541 (720)
Q Consensus 482 ~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~-------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 541 (720)
. .+. ..+..+++|+.|++++|.+.... +..+..++.|+.|++++|.+.+..+..+.
T Consensus 243 ~---~l~-~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 243 E---NLK-LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp H---HHH-HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred H---HHH-HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence 1 000 02466788999999999854433 23455778899999999988765444433
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.7e-16 Score=180.84 Aligned_cols=173 Identities=22% Similarity=0.262 Sum_probs=132.5
Q ss_pred hCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEe
Q 004993 296 FKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEID 375 (720)
Q Consensus 296 f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~ 375 (720)
+..+++|+.|++++|.+.... .+..+++|+.|++++|.+..+|....+++|+.|+|++|.+..++ .+..+++|+.|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 456778888888888776632 35558888888888888888877447888888888888888766 678888888888
Q ss_pred cCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCc
Q 004993 376 LSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRR 455 (720)
Q Consensus 376 Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~ 455 (720)
|++|.+.. ++.+..+++|+.|+|++|.+... +.+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+
T Consensus 116 Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 116 LEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp CTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred ecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-
Confidence 88887543 56688888888888888876553 567888888888888887665555 7788888888888886544
Q ss_pred cchhccCCCCCCEEcccCCcCcC
Q 004993 456 IPESIINLSKLELLHLKNCSKLL 478 (720)
Q Consensus 456 lp~~l~~l~~L~~L~L~~~~~l~ 478 (720)
+| .+..+++|+.|+|++|+...
T Consensus 190 l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CG-GGTTCTTCSEEECCSEEEEC
T ss_pred Ch-HHccCCCCCEEEccCCcCcC
Confidence 44 47788888888888876654
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.5e-16 Score=181.14 Aligned_cols=164 Identities=21% Similarity=0.235 Sum_probs=113.7
Q ss_pred eecCCccceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCccc
Q 004993 281 LDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQ 360 (720)
Q Consensus 281 l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~ 360 (720)
|+++.+....++ .+..+++|+.|+|++|.+....+ +..+++|+.|++++|.+..+|....+++|+.|+|++|.+..
T Consensus 48 L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~ 123 (605)
T 1m9s_A 48 IIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 123 (605)
T ss_dssp CBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC
T ss_pred EECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC
Confidence 344444443332 46777788888888777766444 55577788888888877777755577788888888887777
Q ss_pred ccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCC
Q 004993 361 LWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI 440 (720)
Q Consensus 361 l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~ 440 (720)
++ .+..+++|+.|+|++|.+.. ++.+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+ +| .+..++
T Consensus 124 l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~ 197 (605)
T 1m9s_A 124 IN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLK 197 (605)
T ss_dssp CG-GGGGCTTCSEEECCSSCCCC-CGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCT
T ss_pred Cc-cccCCCccCEEECCCCccCC-chhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCC
Confidence 64 46777788888888776544 3557777788888888776655444 7777788888887776543 44 467777
Q ss_pred CCcEEeccCCCCCC
Q 004993 441 SLQRLYLSGCSNLR 454 (720)
Q Consensus 441 ~L~~L~L~~n~~~~ 454 (720)
+|+.|+|++|.+.+
T Consensus 198 ~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 198 NLDVLELFSQECLN 211 (605)
T ss_dssp TCSEEECCSEEEEC
T ss_pred CCCEEEccCCcCcC
Confidence 88888887776544
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=2.2e-18 Score=186.69 Aligned_cols=225 Identities=15% Similarity=0.088 Sum_probs=174.8
Q ss_pred EeecCCccceecCc----hhhCCCCCccEEEeeCCCCcccc---cCCc-------ccccCceEEEecCCCCCC-----CC
Q 004993 280 LLDMSKVNEIHLNS----STFKKMPRLRFLKFHGENKFKIS---HFEG-------EAFTELRYLYWDGYPSKS-----LP 340 (720)
Q Consensus 280 ~l~ls~~~~~~~~~----~~f~~l~~L~~L~L~~~~~~~~~---~~~~-------~~l~~L~~L~l~~~~~~~-----lp 340 (720)
.++++++......+ ..+..+++|+.|++++|.+.... +... ..+++|++|++++|.++. +|
T Consensus 36 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 115 (386)
T 2ca6_A 36 EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115 (386)
T ss_dssp EEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHH
Confidence 46777765444333 34779999999999997554321 2112 347999999999999877 55
Q ss_pred CCC-CCCCccEEEccCCCccc-----ccCCCCCC---------CCccEEecCCCcCC-CCCC----CCcCCcccceeecc
Q 004993 341 PVI-RLDTLISLQLRESKVEQ-----LWDGVPNL---------VNLKEIDLSYSRQL-KKLP----DLSQARNLENLLLK 400 (720)
Q Consensus 341 ~~~-~l~~L~~L~L~~n~i~~-----l~~~~~~L---------~~L~~L~Ls~n~~~-~~~p----~l~~l~~L~~L~L~ 400 (720)
..+ .+++|++|+|++|.+.. ++..+..+ ++|++|+|++|++. ..+| .+..+++|++|+++
T Consensus 116 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 195 (386)
T 2ca6_A 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc
Confidence 555 78999999999999873 33344445 89999999999876 3444 26678999999999
Q ss_pred cccccc-----cccccccCCcccceeeccccccc----cccccccCCCCCCcEEeccCCCCCCc----cchhcc--CCCC
Q 004993 401 ACSSLV-----ETHSSIQYLSKLVTLDMRLCKNL----NRLPSSLCELISLQRLYLSGCSNLRR----IPESII--NLSK 465 (720)
Q Consensus 401 ~~~~~~-----~~p~~l~~l~~L~~L~L~~n~~~----~~lp~~l~~l~~L~~L~L~~n~~~~~----lp~~l~--~l~~ 465 (720)
+|.+.. ..|..+..+++|+.|+|++|.+. ..+|..+..+++|++|+|++|.+.+. +|..+. .+++
T Consensus 196 ~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~ 275 (386)
T 2ca6_A 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275 (386)
T ss_dssp SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence 998763 24448889999999999999875 67888899999999999999987665 677774 4999
Q ss_pred CCEEcccCCcCcC----cCCCCCCCccEEec-cCCCccccccCcccccccCC
Q 004993 466 LELLHLKNCSKLL----SLPELPCNLFSVGV-RRCTSLEALSSFSFLFSAMS 512 (720)
Q Consensus 466 L~~L~L~~~~~l~----~lp~lp~~L~~L~~-~~~~~L~~L~l~~N~l~~~~ 512 (720)
|+.|+|++|.... .+|. .+ .++++|+.|++++|.+++..
T Consensus 276 L~~L~L~~n~i~~~g~~~l~~--------~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 276 LQTLRLQYNEIELDAVRTLKT--------VIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECCSSCCBHHHHHHHHH--------HHHHHCTTCCEEECTTSBSCTTS
T ss_pred eEEEECcCCcCCHHHHHHHHH--------HHHhcCCCceEEEccCCcCCcch
Confidence 9999999998766 3665 44 56899999999999987654
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=9.2e-17 Score=166.76 Aligned_cols=173 Identities=23% Similarity=0.260 Sum_probs=148.5
Q ss_pred hCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEe
Q 004993 296 FKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEID 375 (720)
Q Consensus 296 f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~ 375 (720)
+..+++|+.|++++|.+.... ....+++|++|++++|.+..++....+++|++|++++|.++.++. +..+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 456889999999999887642 355699999999999999999885589999999999999998765 89999999999
Q ss_pred cCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCc
Q 004993 376 LSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRR 455 (720)
Q Consensus 376 Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~ 455 (720)
+++|.+.. ++.+..+++|+.|++++|.+... +.+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+. .
T Consensus 119 L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~ 192 (291)
T 1h6t_A 119 LEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-D 192 (291)
T ss_dssp CTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-B
T ss_pred CCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC-C
Confidence 99998654 57799999999999999987664 678999999999999997665544 889999999999999754 4
Q ss_pred cchhccCCCCCCEEcccCCcCcC
Q 004993 456 IPESIINLSKLELLHLKNCSKLL 478 (720)
Q Consensus 456 lp~~l~~l~~L~~L~L~~~~~l~ 478 (720)
+|. +..+++|+.|++++|+...
T Consensus 193 l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 LRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred Chh-hccCCCCCEEECcCCcccC
Confidence 664 8999999999999986543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=6.6e-17 Score=159.05 Aligned_cols=179 Identities=13% Similarity=0.042 Sum_probs=146.8
Q ss_pred cEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccc
Q 004993 349 ISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK 427 (720)
Q Consensus 349 ~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 427 (720)
+.++.+++.++.+|..+ .++|++|++++|.+....+. +..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 57888999999999766 46999999999987765555 7899999999999998876655667899999999999998
Q ss_pred cccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccc
Q 004993 428 NLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFL 507 (720)
Q Consensus 428 ~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~ 507 (720)
+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|......+. .+.++++|+.|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--------~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG--------VFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------TTTTCTTCCEEECCSCC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH--------HhccCCCccEEEecCCC
Confidence 7766666678999999999999987766666689999999999999876543333 46788999999999997
Q ss_pred cccCCCCCccccccccccccchhhHHHHHHHHHHHHH
Q 004993 508 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQ 544 (720)
Q Consensus 508 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 544 (720)
+.+ .++.++.|+++.|.++|.+|..++.++
T Consensus 160 ~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 160 WDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp BCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred eec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 764 355788889999999888776655443
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1e-16 Score=156.33 Aligned_cols=128 Identities=14% Similarity=0.187 Sum_probs=61.2
Q ss_pred cccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeeccc
Q 004993 322 AFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKA 401 (720)
Q Consensus 322 ~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~ 401 (720)
.+++|++|++++|.+..+|....+++|++|++++|.++.++ .+..+++|++|++++|.
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~--------------------- 99 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD--------------------- 99 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT---------------------
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc---------------------
Confidence 35566666666666555553224555555555555444332 34444444444444444
Q ss_pred ccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCC
Q 004993 402 CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC 474 (720)
Q Consensus 402 ~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~ 474 (720)
+....+..++.+++|++|++++|.+.+..|..++.+++|++|++++|...+.+| .+..+++|+.|++++|
T Consensus 100 --l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 100 --VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp --CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred --cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 433334444444444444444444444444444444445555554444333343 3444445555555444
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.5e-15 Score=162.04 Aligned_cols=217 Identities=18% Similarity=0.071 Sum_probs=163.2
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCC-CCCCCCC--CCCCccE-EEccCCCccccc-CCCCCCCCccEE
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPS-KSLPPVI--RLDTLIS-LQLRESKVEQLW-DGVPNLVNLKEI 374 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~lp~~~--~l~~L~~-L~L~~n~i~~l~-~~~~~L~~L~~L 374 (720)
++++.|+|++|.+..+.+..+..+++|++|++++|.+ +.+|... ++++|.+ +.+.+|+++.++ ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 6899999999999886666778899999999999996 5566643 7777765 667789999885 668899999999
Q ss_pred ecCCCcCCCCCCC-CcCCcccceeeccccccccccc-ccccCCc-ccceeeccccccccccccccCCCCCCcEEeccCCC
Q 004993 375 DLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH-SSIQYLS-KLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCS 451 (720)
Q Consensus 375 ~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p-~~l~~l~-~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~ 451 (720)
++++|++....+. +....++..|++.++.....++ ..+..+. .++.|++++|.+ ..+|.......+|+.|++++|+
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cCCChhhccccchhHHhhccCC
Confidence 9999986655443 5567778889887765555555 3556654 689999998864 5677666678899999999877
Q ss_pred CCCccch-hccCCCCCCEEcccCCcCcCcCCC-CCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccch
Q 004993 452 NLRRIPE-SIINLSKLELLHLKNCSKLLSLPE-LPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQ 529 (720)
Q Consensus 452 ~~~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~-lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~ 529 (720)
.++.+|. .+..+++|+.|+|++|++ +.+|. ...+|+.|.+.++.+|+.+ | .+..+++|+.+++++
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~~~~~~L~~L~~l~~~~l~~l-----------P-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLKKL-----------P-TLEKLVALMEASLTY 255 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCC-CCCCSSSCTTCCEEECTTCTTCCCC-----------C-CTTTCCSCCEEECSC
T ss_pred cccCCCHHHhccCcccchhhcCCCCc-CccChhhhccchHhhhccCCCcCcC-----------C-CchhCcChhhCcCCC
Confidence 8888886 468999999999999864 45654 3344554444444443332 3 255788888888886
Q ss_pred h
Q 004993 530 N 530 (720)
Q Consensus 530 N 530 (720)
+
T Consensus 256 ~ 256 (350)
T 4ay9_X 256 P 256 (350)
T ss_dssp H
T ss_pred C
Confidence 5
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=2.2e-18 Score=191.12 Aligned_cols=259 Identities=16% Similarity=0.061 Sum_probs=168.6
Q ss_pred EeecCCccceecCch-hhCCCCCccEEEeeCCCCcccc----cCCcccccCceEEEecCCCCCCCCC--CC-CCC----C
Q 004993 280 LLDMSKVNEIHLNSS-TFKKMPRLRFLKFHGENKFKIS----HFEGEAFTELRYLYWDGYPSKSLPP--VI-RLD----T 347 (720)
Q Consensus 280 ~l~ls~~~~~~~~~~-~f~~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~lp~--~~-~l~----~ 347 (720)
.+|++.+........ .+..+++|+.|++++|.+.... +.....+++|++|++++|.+..... .. .+. +
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~ 86 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCc
Confidence 456665554333333 3778889999999998876422 2223346889999999988654211 11 233 6
Q ss_pred ccEEEccCCCcc-----cccCCCCCCCCccEEecCCCcCCCCCCC------CcCCcccceeeccccccccc----ccccc
Q 004993 348 LISLQLRESKVE-----QLWDGVPNLVNLKEIDLSYSRQLKKLPD------LSQARNLENLLLKACSSLVE----THSSI 412 (720)
Q Consensus 348 L~~L~L~~n~i~-----~l~~~~~~L~~L~~L~Ls~n~~~~~~p~------l~~l~~L~~L~L~~~~~~~~----~p~~l 412 (720)
|++|++++|++. .++..+..+++|++|++++|.+....+. ....++|++|++++|.+... ++..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 999999999887 4577788889999999998875432221 22356799999998877653 35666
Q ss_pred cCCcccceeeccccccccccccccC-----CCCCCcEEeccCCCCCCc----cchhccCCCCCCEEcccCCcCcCcCCC-
Q 004993 413 QYLSKLVTLDMRLCKNLNRLPSSLC-----ELISLQRLYLSGCSNLRR----IPESIINLSKLELLHLKNCSKLLSLPE- 482 (720)
Q Consensus 413 ~~l~~L~~L~L~~n~~~~~lp~~l~-----~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~~~~l~~lp~- 482 (720)
..+++|++|++++|.+....+..+. .+++|++|++++|.+... +|..+..+++|++|++++|.....-..
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 7788999999998876544333332 366899999998876553 677788888999999998864432100
Q ss_pred CCCCccEEeccCCCccccccCcccccccC----CCCCccccccccccccchhhHHHHHHHHHHH
Q 004993 483 LPCNLFSVGVRRCTSLEALSSFSFLFSAM----SPHNDQYFNLSDCLKLDQNELKGIAEDALQK 542 (720)
Q Consensus 483 lp~~L~~L~~~~~~~L~~L~l~~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 542 (720)
+++. ....+++|+.|++++|.++.. ++..+..++.|+.|++++|.+++..+..+..
T Consensus 247 l~~~----~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 247 LCPG----LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp HHHH----HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred HHHH----HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 0000 122456677777777666543 3334445667777777777776655544443
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3e-16 Score=152.97 Aligned_cols=150 Identities=15% Similarity=0.226 Sum_probs=105.0
Q ss_pred CCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCccc-ccCCCCCCCCccEEe
Q 004993 297 KKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQ-LWDGVPNLVNLKEID 375 (720)
Q Consensus 297 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~-l~~~~~~L~~L~~L~ 375 (720)
..+++|+.|++++|.+.... ....+++|++|++++|.+..++....+++|++|++++|+++. .+..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 56789999999999887533 466699999999999998888766689999999999999985 677788888888888
Q ss_pred cCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCC
Q 004993 376 LSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCS 451 (720)
Q Consensus 376 Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~ 451 (720)
+++|.+....|. +..+++|++|++++|...+.+| .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 888876554443 5566666666666665334443 45555555555555554322 22 34445555555555543
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=151.95 Aligned_cols=150 Identities=19% Similarity=0.119 Sum_probs=96.2
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEccCCCccccc--CCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccc
Q 004993 327 RYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLW--DGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACS 403 (720)
Q Consensus 327 ~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~--~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~ 403 (720)
+.++++++.++.+|..+ ...+++|+|++|+++.++ ..+..+++|++|+|++|.+....+. +..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 35667777777776654 334567777777777663 2356677777777777765554443 6666677777777666
Q ss_pred ccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCc
Q 004993 404 SLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL 477 (720)
Q Consensus 404 ~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l 477 (720)
+.+..+..+..+++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 65555555666666667776666666555666666666666666666655555666666666666666666543
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=1.8e-15 Score=150.26 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=84.9
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccC-CCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccc
Q 004993 327 RYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWD-GVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSS 404 (720)
Q Consensus 327 ~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~ 404 (720)
+.++.+++.++.+|..+. ++|+.|++++|+++.++. .+..+++|++|+|++|.+....|. +.++++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 345566666666665442 566666666666666553 456666666666666665544444 55666666666666554
Q ss_pred cccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCc
Q 004993 405 LVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCS 475 (720)
Q Consensus 405 ~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 475 (720)
....+..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|+
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 43333334556666666666655555555555556666666666655444444445555555555555554
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=1.6e-17 Score=178.27 Aligned_cols=233 Identities=14% Similarity=0.033 Sum_probs=172.0
Q ss_pred EEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCC-----CC-CCC-CccEEEccCCCcccc-cCCCCCC-----CC
Q 004993 304 FLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPP-----VI-RLD-TLISLQLRESKVEQL-WDGVPNL-----VN 370 (720)
Q Consensus 304 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-----~~-~l~-~L~~L~L~~n~i~~l-~~~~~~L-----~~ 370 (720)
.++++.|.+.+..+......++|++|++++|.++..+. .+ .++ +|++|+|++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777776555555557779999999999988874 23 677 899999999999865 3444443 99
Q ss_pred ccEEecCCCcCCCCCCC-----CcCC-cccceeecccccccccccccc----cC-Ccccceeecccccccc----ccccc
Q 004993 371 LKEIDLSYSRQLKKLPD-----LSQA-RNLENLLLKACSSLVETHSSI----QY-LSKLVTLDMRLCKNLN----RLPSS 435 (720)
Q Consensus 371 L~~L~Ls~n~~~~~~p~-----l~~l-~~L~~L~L~~~~~~~~~p~~l----~~-l~~L~~L~L~~n~~~~----~lp~~ 435 (720)
|++|+|++|.+....+. +..+ ++|++|++++|.+....+..+ .. .++|++|+|++|.+.. .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999997766554 4444 899999999998766555443 33 3699999999998764 44555
Q ss_pred cCCCC-CCcEEeccCCCCCCccchh----ccCC-CCCCEEcccCCcCcCc----CCCCCCCccEEeccC-CCccccccCc
Q 004993 436 LCELI-SLQRLYLSGCSNLRRIPES----IINL-SKLELLHLKNCSKLLS----LPELPCNLFSVGVRR-CTSLEALSSF 504 (720)
Q Consensus 436 l~~l~-~L~~L~L~~n~~~~~lp~~----l~~l-~~L~~L~L~~~~~l~~----lp~lp~~L~~L~~~~-~~~L~~L~l~ 504 (720)
+..++ +|++|+|++|.+.+..+.. +..+ ++|+.|+|++|..... ++. .+.. +++|+.|+++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~--------~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY--------IFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH--------HHHHSCTTCCEEECC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH--------HHhcCCCCceEEECc
Confidence 56665 9999999999876665543 4455 5999999999975542 332 2333 4689999999
Q ss_pred ccccccCCC----CCccccccccccccchhhHHHHHHHHHHHHH
Q 004993 505 SFLFSAMSP----HNDQYFNLSDCLKLDQNELKGIAEDALQKIQ 544 (720)
Q Consensus 505 ~N~l~~~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 544 (720)
+|.+++..+ ..+..++.|+.|++++|.+++..+..+..+.
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 999877544 2345678899999999997665555554443
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=149.82 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=108.5
Q ss_pred cEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC--CcCCcccceeecccccccccccccccCCcccceeecccc
Q 004993 349 ISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 426 (720)
Q Consensus 349 ~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 426 (720)
+++++++|.++.+|..+. ..+++|+|++|.+....|. +..+++|+.|++++|.+.+..+..+..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 478888888888887664 4567888888876665443 677788888888877766655567777777777777777
Q ss_pred ccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCccc
Q 004993 427 KNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSF 506 (720)
Q Consensus 427 ~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N 506 (720)
.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.+....|. .+.++++|+.|++++|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG--------AFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT--------TTTTCTTCCEEECCSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH--------HhcCCCCCCEEEecCc
Confidence 76666666677777777777777776666667777777777777777765554454 4556666777777666
Q ss_pred cccc
Q 004993 507 LFSA 510 (720)
Q Consensus 507 ~l~~ 510 (720)
.+..
T Consensus 164 ~l~c 167 (220)
T 2v70_A 164 PFNC 167 (220)
T ss_dssp CEEC
T ss_pred CCcC
Confidence 6653
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=1.2e-17 Score=185.32 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=9.0
Q ss_pred ccCCCccccccCcccccc
Q 004993 492 VRRCTSLEALSSFSFLFS 509 (720)
Q Consensus 492 ~~~~~~L~~L~l~~N~l~ 509 (720)
+..+++|+.|++++|.++
T Consensus 394 l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHCCCCCEEECCSSSCC
T ss_pred HHhCCCccEEECCCCCCC
Confidence 334455555555555543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=2.6e-15 Score=149.05 Aligned_cols=151 Identities=18% Similarity=0.092 Sum_probs=120.1
Q ss_pred cEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccc
Q 004993 349 ISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK 427 (720)
Q Consensus 349 ~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 427 (720)
+.+++++++++.+|..+. ++|+.|++++|.+....+. +..+++|+.|+|++|.+.+..|..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578899999999998765 7899999999987666654 8888999999999988877778888889999999999887
Q ss_pred cccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccc
Q 004993 428 NLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFL 507 (720)
Q Consensus 428 ~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~ 507 (720)
+....+..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.+....+. .+..+++|+.|++++|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG--------TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------TTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH--------HHhCCCCCCEEEeCCCC
Confidence 6654444567888888898888887777777888888888888888866544443 45667778888888777
Q ss_pred cc
Q 004993 508 FS 509 (720)
Q Consensus 508 l~ 509 (720)
+.
T Consensus 164 ~~ 165 (220)
T 2v9t_B 164 FI 165 (220)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=3.8e-15 Score=158.90 Aligned_cols=214 Identities=16% Similarity=0.109 Sum_probs=162.6
Q ss_pred cEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCC-C-CCCCccEEEccCCCcc-ccc-CCCCCCCCccE-EecC
Q 004993 303 RFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPV-I-RLDTLISLQLRESKVE-QLW-DGVPNLVNLKE-IDLS 377 (720)
Q Consensus 303 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~L~~n~i~-~l~-~~~~~L~~L~~-L~Ls 377 (720)
++++-+++.+..+ |.+.++++++|++++|.++.+|.. + ++++|++|+|++|++. .+| ..+.++++|+. +.++
T Consensus 12 ~~v~C~~~~Lt~i---P~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEI---PSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSC---CTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCcc---CcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4566666666542 223367899999999999999975 4 7999999999999985 465 35788888876 5556
Q ss_pred CCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeecccccccccccc-ccCCC-CCCcEEeccCCCCCC
Q 004993 378 YSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS-SLCEL-ISLQRLYLSGCSNLR 454 (720)
Q Consensus 378 ~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~-~l~~l-~~L~~L~L~~n~~~~ 454 (720)
+|++....|. |..+++|++|++++|.+....+..+....++..|++.++..+..+|. .+..+ ..|+.|+|++|. ++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-cc
Confidence 6766665565 88999999999999987766666667777888999987666666654 34455 468899999986 45
Q ss_pred ccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCcccccccccccc
Q 004993 455 RIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL 527 (720)
Q Consensus 455 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L 527 (720)
.+|......++|+.|++++|+.++.+|.- .+.++++|+.|++++|.++..++..+..+..|+.+++
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-------~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPND-------VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTT-------TTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHH-------HhccCcccchhhcCCCCcCccChhhhccchHhhhccC
Confidence 67777777889999999988888888851 3678899999999999998877766666666665555
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=7.1e-15 Score=146.83 Aligned_cols=150 Identities=21% Similarity=0.081 Sum_probs=89.7
Q ss_pred ceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccc-cCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccc
Q 004993 326 LRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQL-WDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACS 403 (720)
Q Consensus 326 L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l-~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~ 403 (720)
.+.++.+++.++.+|..+. ++|++|+|++|.++.+ |..+..+++|++|+|++|.+....+. +..+++|+.|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 3446666666666665442 6666677777666655 44566666777777776665333333 5666666666666665
Q ss_pred ccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCc
Q 004993 404 SLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL 477 (720)
Q Consensus 404 ~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l 477 (720)
+....+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|+..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55444444566666666666666433 55666666666666666666544433344566666666666666443
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=7.7e-16 Score=157.28 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=121.7
Q ss_pred CCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCC
Q 004993 299 MPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSY 378 (720)
Q Consensus 299 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~ 378 (720)
+.++..+++.++.+.... ....+++|++|++++|.++.+|....+++|++|++++|+++.++. +..+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 444555666666655433 344578888888888888888744478888888888888887776 78888888888888
Q ss_pred CcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccch
Q 004993 379 SRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPE 458 (720)
Q Consensus 379 n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~ 458 (720)
|++.. +|.+.. ++|+.|++++|.+.+ + +.+..+++|+.|++++|.+.+ +| .+..+++|+.|+|++|.+.+. .
T Consensus 95 N~l~~-l~~~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 95 NRLKN-LNGIPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp SCCSC-CTTCCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred CccCC-cCcccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--H
Confidence 87544 555444 788888888886654 3 357788888888888876544 44 577788888888888876554 5
Q ss_pred hccCCCCCCEEcccCCcCcC
Q 004993 459 SIINLSKLELLHLKNCSKLL 478 (720)
Q Consensus 459 ~l~~l~~L~~L~L~~~~~l~ 478 (720)
.+..+++|+.|++++|+...
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEEC
T ss_pred HhccCCCCCEEeCCCCcccC
Confidence 67788888888888876543
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=2.7e-15 Score=160.74 Aligned_cols=148 Identities=22% Similarity=0.178 Sum_probs=90.3
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCC-CC-CCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccc
Q 004993 327 RYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDG-VP-NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACS 403 (720)
Q Consensus 327 ~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~-~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~ 403 (720)
+.++++++.++.+|..+ ...++.|+|++|+++.++.. +. .+++|++|+|++|++....+. |..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45666667777776644 23467777777777766543 33 677777777777765554444 6666667777776666
Q ss_pred ccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhc----cCCCCCCEEcccCCcC
Q 004993 404 SLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESI----INLSKLELLHLKNCSK 476 (720)
Q Consensus 404 ~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l----~~l~~L~~L~L~~~~~ 476 (720)
+....+..+..+++|+.|+|++|.+....|..+..+++|+.|+|++|.+.+ +|..+ ..+++|+.|+|++|++
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCC
Confidence 555444556666666666666666555555666666666666666665333 33332 3466666666666543
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=1.2e-15 Score=163.55 Aligned_cols=178 Identities=16% Similarity=0.098 Sum_probs=147.1
Q ss_pred cEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-Cc-CCcccceeecccccccccccccccCCcccceeecccc
Q 004993 349 ISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LS-QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 426 (720)
Q Consensus 349 ~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~-~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 426 (720)
+.+++++++++.+|..+. +.++.|+|++|.+....+. +. .+++|+.|+|++|.+....+..+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 689999999999998765 4689999999987776666 66 8999999999999888777788999999999999999
Q ss_pred ccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCccc
Q 004993 427 KNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSF 506 (720)
Q Consensus 427 ~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N 506 (720)
.+....+..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+. .+|... +. .+.++++|+.|++++|
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~--~~--~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL--IK--DGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGG--TC------CTTCCEEECCSS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHH--hc--CcccCCcCCEEECCCC
Confidence 877666667899999999999999988777889999999999999998654 455310 00 1156899999999999
Q ss_pred ccccCCCCCcccccc--ccccccchhhHH
Q 004993 507 LFSAMSPHNDQYFNL--SDCLKLDQNELK 533 (720)
Q Consensus 507 ~l~~~~~~~l~~l~~--L~~L~L~~N~l~ 533 (720)
.++...+..+..++. ++.|+|++|.+.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 998777666666766 478999999875
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=6.7e-15 Score=147.00 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=113.4
Q ss_pred ccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeecccc
Q 004993 348 LISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 426 (720)
Q Consensus 348 L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 426 (720)
-+.++.+++++..+|.++. ++|++|+|++|.+....|. +..+++|+.|+|++|.+....+..+..+++|+.|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4678888889998887665 8889999999887776665 788888888888888765544455678888888888888
Q ss_pred ccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCccc
Q 004993 427 KNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSF 506 (720)
Q Consensus 427 ~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N 506 (720)
.+.+..+..+..+++|++|+|++|.+ ..+|..+..+++|+.|+|++|++....+. .+.++++|+.|++++|
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHG--------AFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCTT--------TTTTCTTCCEEECTTS
T ss_pred cCCccChhHhCcchhhCeEeccCCcc-cccCcccccCCCCCEEECCCCcCCccCHH--------HHhCCCCCCEEEeeCC
Confidence 76655555567788888888888764 47777788888888888888755432223 3566677777777777
Q ss_pred cccc
Q 004993 507 LFSA 510 (720)
Q Consensus 507 ~l~~ 510 (720)
.+..
T Consensus 170 ~~~c 173 (229)
T 3e6j_A 170 PWDC 173 (229)
T ss_dssp CBCT
T ss_pred CccC
Confidence 6653
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=1.1e-15 Score=156.15 Aligned_cols=173 Identities=20% Similarity=0.127 Sum_probs=142.7
Q ss_pred cccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeeccc
Q 004993 322 AFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKA 401 (720)
Q Consensus 322 ~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~ 401 (720)
.+.++..++++++.++.++....+++|++|++++|+++.++ ++..+++|++|+|++|.+....+ +..+++|+.|++++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 47778888999999999885448999999999999999988 78899999999999998665444 99999999999999
Q ss_pred ccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCC
Q 004993 402 CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP 481 (720)
Q Consensus 402 ~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp 481 (720)
|.+.+ +|. +.. ++|+.|++++|.+.+ ++ .+..+++|+.|+|++|.+.+ +| .+..+++|+.|++++|+.... +
T Consensus 95 N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~ 166 (263)
T 1xeu_A 95 NRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-G 166 (263)
T ss_dssp SCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-T
T ss_pred CccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-H
Confidence 97655 443 333 899999999997554 44 58899999999999987544 55 688999999999999876543 3
Q ss_pred CCCCCccEEeccCCCccccccCcccccccCCC
Q 004993 482 ELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP 513 (720)
Q Consensus 482 ~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~ 513 (720)
.+.++++|+.|++++|.++....
T Consensus 167 ---------~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 167 ---------GLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ---------TSTTCCCCCEEEEEEEEEECCCE
T ss_pred ---------HhccCCCCCEEeCCCCcccCCcc
Confidence 56788999999999999877643
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=9.1e-16 Score=179.04 Aligned_cols=145 Identities=15% Similarity=0.060 Sum_probs=84.7
Q ss_pred CCCCCCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccccccccccc
Q 004993 334 YPSKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSS 411 (720)
Q Consensus 334 ~~~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~ 411 (720)
|.+...|..+ .+.+|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|. +..+++|++|+|++|.+. .+|..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~ 288 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAE 288 (727)
T ss_dssp -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSS
T ss_pred cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChh
Confidence 3333334434 566677777777776666666666677777777777655 4454 666777777777776655 56666
Q ss_pred ccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCC-CCEEcccCCcCcCcCC
Q 004993 412 IQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSK-LELLHLKNCSKLLSLP 481 (720)
Q Consensus 412 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~-L~~L~L~~~~~l~~lp 481 (720)
++.|++|++|+|++|.+ +.+|..++.+++|++|+|++|.+.+.+|..+..+.. +..|+|++|...+.+|
T Consensus 289 ~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp GGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred hcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 77777777777776643 466666667777777777777666666665543321 1224556655544443
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=3.8e-15 Score=173.80 Aligned_cols=187 Identities=17% Similarity=0.120 Sum_probs=114.9
Q ss_pred CCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCC
Q 004993 300 PRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYS 379 (720)
Q Consensus 300 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n 379 (720)
+.++.|.|.++.+... ....|+.++|+.+. +..+++..|.+...+..+..+++|+.|+|++|
T Consensus 173 ~~~~~l~L~~n~~~~~------~~~~l~~l~Ls~~~------------i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n 234 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA------NQALLQHKKLSQYS------------IDEDDDIENRMVMPKDSKYDDQLWHALDLSNL 234 (727)
T ss_dssp -------------------------------------------------------------------CCCCCCEEECTTS
T ss_pred CccceEEeeCCCCCcc------hhhHhhcCccCccc------------ccCccccccceecChhhhccCCCCcEEECCCC
Confidence 4566666666554331 12234444444443 33445666777766788999999999999999
Q ss_pred cCCCCCC-CCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccch
Q 004993 380 RQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPE 458 (720)
Q Consensus 380 ~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~ 458 (720)
.+. .+| .+..+++|++|+|++|.+. .+|..++.|++|+.|+|++|.+. .+|..++.|++|++|+|++|. ++.+|.
T Consensus 235 ~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~-l~~lp~ 310 (727)
T 4b8c_D 235 QIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNM-VTTLPW 310 (727)
T ss_dssp CCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSC-CCCCCS
T ss_pred CCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCC-CCccCh
Confidence 876 555 4779999999999999877 88999999999999999999866 889999999999999999986 468899
Q ss_pred hccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCC-ccccccCcccccccCCCCCc
Q 004993 459 SIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCT-SLEALSSFSFLFSAMSPHND 516 (720)
Q Consensus 459 ~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~-~L~~L~l~~N~l~~~~~~~l 516 (720)
.++.+++|+.|+|++|++.+.+|. .+..+. .+..+++++|.+++.+|..+
T Consensus 311 ~~~~l~~L~~L~L~~N~l~~~~p~--------~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 311 EFGNLCNLQFLGVEGNPLEKQFLK--------ILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp STTSCTTCCCEECTTSCCCSHHHH--------HHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred hhhcCCCccEEeCCCCccCCCChH--------HHhhcchhhhHHhhccCcccCcCcccc
Confidence 999999999999999998877775 222221 12235677777777776644
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.50 E-value=9.6e-14 Score=134.53 Aligned_cols=126 Identities=19% Similarity=0.164 Sum_probs=67.5
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCC--CCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccc
Q 004993 327 RYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDG--VPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACS 403 (720)
Q Consensus 327 ~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~--~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~ 403 (720)
++++++++.++.+|..+. .+|++|++++|+++.++.. +..+++|++|+|++|.+....|. +..+++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 456666666666665442 2566666666666655432 55556666666666555544443 5555555555555555
Q ss_pred ccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCC
Q 004993 404 SLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNL 453 (720)
Q Consensus 404 ~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~ 453 (720)
+.+..+..+..+++|++|+|++|.+.+..|..+..+++|++|+|++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 54444444555555555555555544444444555555555555555443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=1.3e-16 Score=180.58 Aligned_cols=121 Identities=19% Similarity=0.156 Sum_probs=70.4
Q ss_pred ccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEccc
Q 004993 393 NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLK 472 (720)
Q Consensus 393 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 472 (720)
.|+.|++++|.+.+ +|. ++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+.+ +| .++.+++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 35666666665443 444 666666666666666543 566666666666666666665443 55 56666666666666
Q ss_pred CCcCcCcC-CCCCCCccEEeccCCCccccccCcccccccCCCCCc---cccccccccc
Q 004993 473 NCSKLLSL-PELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHND---QYFNLSDCLK 526 (720)
Q Consensus 473 ~~~~l~~l-p~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l---~~l~~L~~L~ 526 (720)
+|.+.+.. |. .+.++++|+.|++++|.+++.+|... ..+++|+.|+
T Consensus 517 ~N~l~~~~~p~--------~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQ--------PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTG--------GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcH--------HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 66544433 44 55566666666666666666554321 1245555543
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=1.5e-13 Score=133.11 Aligned_cols=130 Identities=16% Similarity=0.083 Sum_probs=113.4
Q ss_pred cEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC--CcCCcccceeecccccccccccccccCCcccceeecccc
Q 004993 349 ISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 426 (720)
Q Consensus 349 ~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 426 (720)
+++++++++++.+|..+.. +|++|++++|.+....+. +..+++|++|++++|.+.+..|..+..+++|+.|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6899999999999987654 899999999987766664 889999999999999888888889999999999999999
Q ss_pred ccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcC
Q 004993 427 KNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSL 480 (720)
Q Consensus 427 ~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l 480 (720)
.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|++|+|++|+.....
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 888777777889999999999999888888888999999999999999776543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=7.9e-14 Score=131.92 Aligned_cols=131 Identities=18% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCCccEEEccCCCcc--cccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceee
Q 004993 345 LDTLISLQLRESKVE--QLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLD 422 (720)
Q Consensus 345 l~~L~~L~L~~n~i~--~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 422 (720)
+++|++|++++|++. .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 356677777777776 6666667777777777777765443 5577777777777777776665666666677788888
Q ss_pred ccccccccc-cccccCCCCCCcEEeccCCCCCCccc---hhccCCCCCCEEcccCCcC
Q 004993 423 MRLCKNLNR-LPSSLCELISLQRLYLSGCSNLRRIP---ESIINLSKLELLHLKNCSK 476 (720)
Q Consensus 423 L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~~~~~lp---~~l~~l~~L~~L~L~~~~~ 476 (720)
+++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 877754432 12567777888888888876554333 3677788888888887753
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=1.7e-16 Score=179.56 Aligned_cols=180 Identities=18% Similarity=0.101 Sum_probs=145.4
Q ss_pred CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCc-------------CCCCCCC-CcCCcccceee-cccccccccc
Q 004993 344 RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSR-------------QLKKLPD-LSQARNLENLL-LKACSSLVET 408 (720)
Q Consensus 344 ~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~-------------~~~~~p~-l~~l~~L~~L~-L~~~~~~~~~ 408 (720)
..++|+.|+|++|+++.+|..++.+++|+.|++++|. ..+..|. ++.+++|+.|+ ++.|.. ..+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-DDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-HHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-chh
Confidence 5778999999999999999999999999999997764 3444454 77888888888 554422 111
Q ss_pred cc------cccC--CcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcC
Q 004993 409 HS------SIQY--LSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSL 480 (720)
Q Consensus 409 p~------~l~~--l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l 480 (720)
+. .+.. ...|+.|+|++|.+. .+|. ++.+++|+.|+|++|.+. .+|..++++++|+.|+|++|.+.+ +
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred hhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-C
Confidence 11 1111 125899999999755 4786 999999999999999755 899999999999999999997654 5
Q ss_pred CCCCCCccEEeccCCCccccccCcccccccCC-CCCccccccccccccchhhHHHHHH
Q 004993 481 PELPCNLFSVGVRRCTSLEALSSFSFLFSAMS-PHNDQYFNLSDCLKLDQNELKGIAE 537 (720)
Q Consensus 481 p~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~ 537 (720)
| .+.++++|+.|++++|.+++.. |..+..+++|+.|+|++|.+++.+|
T Consensus 502 p---------~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 502 D---------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp G---------GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred c---------ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5 4788999999999999999987 8999999999999999999988654
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=6.2e-14 Score=129.78 Aligned_cols=126 Identities=17% Similarity=0.078 Sum_probs=82.3
Q ss_pred CCccEEEccCCCcc--cccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeec
Q 004993 346 DTLISLQLRESKVE--QLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM 423 (720)
Q Consensus 346 ~~L~~L~L~~n~i~--~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 423 (720)
++|+.|++++|.++ .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45666666666666 5666666677777777777765443 55666777777777777666556666666777777777
Q ss_pred cccccccc-cccccCCCCCCcEEeccCCCCCCccc---hhccCCCCCCEEccc
Q 004993 424 RLCKNLNR-LPSSLCELISLQRLYLSGCSNLRRIP---ESIINLSKLELLHLK 472 (720)
Q Consensus 424 ~~n~~~~~-lp~~l~~l~~L~~L~L~~n~~~~~lp---~~l~~l~~L~~L~L~ 472 (720)
++|.+.+. .|..++.+++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77765442 23566677777777777776544333 356677777777765
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.44 E-value=9e-15 Score=167.37 Aligned_cols=240 Identities=14% Similarity=-0.044 Sum_probs=145.5
Q ss_pred hCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCC----CCCCCCC-CCCCccEEEccCCCcccccCCCCCCCC
Q 004993 296 FKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPS----KSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVN 370 (720)
Q Consensus 296 f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~ 370 (720)
+.++++|+.|++++|.+.. .+.....+++|++|+++.+.. ...+..+ .+++|+.|+++++....+|..+..+++
T Consensus 216 ~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 294 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294 (592)
T ss_dssp HHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGG
T ss_pred HhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCC
Confidence 3456666666666655444 222233356666666654321 1112222 566777777777666666766777788
Q ss_pred ccEEecCCCcCCCCCC-C-CcCCcccceeecccccccccccccccCCcccceeeccc----------ccccc-c-ccccc
Q 004993 371 LKEIDLSYSRQLKKLP-D-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRL----------CKNLN-R-LPSSL 436 (720)
Q Consensus 371 L~~L~Ls~n~~~~~~p-~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~----------n~~~~-~-lp~~l 436 (720)
|++|+|++|.+..... . +..+++|+.|+++++.....++.....+++|++|++++ |...+ . ++...
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 8888888776322211 1 46677788887774432233344445677788888873 33322 1 22223
Q ss_pred CCCCCCcEEeccCCCCCCccchhccC-CCCCCEEcccC---CcCcCcCCC---------CCCCccEEecc----------
Q 004993 437 CELISLQRLYLSGCSNLRRIPESIIN-LSKLELLHLKN---CSKLLSLPE---------LPCNLFSVGVR---------- 493 (720)
Q Consensus 437 ~~l~~L~~L~L~~n~~~~~lp~~l~~-l~~L~~L~L~~---~~~l~~lp~---------lp~~L~~L~~~---------- 493 (720)
..+++|++|+++.|.+.+..+..+.. +++|+.|++++ |+.++..|. ..++|+.|.++
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 45778888888766666555555554 78888888873 334443321 13567777763
Q ss_pred ------CCCccccccCccccccc-CCCCCccccccccccccchhhHHHHH
Q 004993 494 ------RCTSLEALSSFSFLFSA-MSPHNDQYFNLSDCLKLDQNELKGIA 536 (720)
Q Consensus 494 ------~~~~L~~L~l~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~ 536 (720)
.|++|+.|++++|.+++ ..+..+..+++|+.|++++|.+++..
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 26788999998888765 23334456788999999999887653
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=1.5e-13 Score=130.08 Aligned_cols=128 Identities=23% Similarity=0.179 Sum_probs=82.3
Q ss_pred ccCceEEEecCCCCC--CCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceee
Q 004993 323 FTELRYLYWDGYPSK--SLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLL 398 (720)
Q Consensus 323 l~~L~~L~l~~~~~~--~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~ 398 (720)
+++|+.|++++|.+. .+|..+ .+++|++|++++|.++.+ ..+..+++|++|++++|.+...+|. +..+++|+.|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 455555666655554 555554 566666666666666665 5566677777777777766555555 44577777777
Q ss_pred ccccccccc-ccccccCCcccceeeccccccccccc---cccCCCCCCcEEeccCCC
Q 004993 399 LKACSSLVE-THSSIQYLSKLVTLDMRLCKNLNRLP---SSLCELISLQRLYLSGCS 451 (720)
Q Consensus 399 L~~~~~~~~-~p~~l~~l~~L~~L~L~~n~~~~~lp---~~l~~l~~L~~L~L~~n~ 451 (720)
+++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 777755442 12567777777777777776544433 366777788888887775
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=5.9e-13 Score=129.00 Aligned_cols=125 Identities=18% Similarity=0.106 Sum_probs=78.2
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccccc
Q 004993 327 RYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSL 405 (720)
Q Consensus 327 ~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~ 405 (720)
++++++++.++.+|..+ .++|++|++++|.++.+|..+..+++|++|+|++|.+....+. |..+++|++|+|++|.+.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 45667777777777654 3567777777777777776677777777777777765554444 666666666666666655
Q ss_pred ccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCCCC
Q 004993 406 VETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSN 452 (720)
Q Consensus 406 ~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~ 452 (720)
...+..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55555566666666666666554433333455555666666655543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=2e-13 Score=126.33 Aligned_cols=126 Identities=22% Similarity=0.197 Sum_probs=93.4
Q ss_pred ccCceEEEecCCCCC--CCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceee
Q 004993 323 FTELRYLYWDGYPSK--SLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLL 398 (720)
Q Consensus 323 l~~L~~L~l~~~~~~--~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~ 398 (720)
+++|+.|++++|.+. .+|..+ .+++|++|++++|.++.+ ..+..+++|++|++++|.+...+|. +..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 466777777777766 667665 677888888888888777 6677888888888888877665666 55688888888
Q ss_pred ccccccccc-ccccccCCcccceeeccccccccccc---cccCCCCCCcEEeccC
Q 004993 399 LKACSSLVE-THSSIQYLSKLVTLDMRLCKNLNRLP---SSLCELISLQRLYLSG 449 (720)
Q Consensus 399 L~~~~~~~~-~p~~l~~l~~L~~L~L~~n~~~~~lp---~~l~~l~~L~~L~L~~ 449 (720)
+++|.+.+. .+..++.+++|++|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888876552 34678888888888888887655444 3677888888888763
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=126.87 Aligned_cols=125 Identities=20% Similarity=0.185 Sum_probs=86.5
Q ss_pred cEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccc
Q 004993 349 ISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK 427 (720)
Q Consensus 349 ~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 427 (720)
+++++++++++.+|..+. ++|++|++++|.+. .+|. +..+++|+.|++++|.+....+..|..+++|+.|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 578888888888887654 57888888888754 4443 7777777777777777666555667777777777777776
Q ss_pred cccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcC
Q 004993 428 NLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSK 476 (720)
Q Consensus 428 ~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~ 476 (720)
+.+..|..+..+++|++|+|++|.+....+..+..+++|+.|+|++|+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 6655555666777777777777665443334466666777777766643
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=2.7e-12 Score=122.46 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=42.2
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCC-CCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccc
Q 004993 327 RYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDG-VPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSS 404 (720)
Q Consensus 327 ~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~ 404 (720)
+.++++++.++.+|..+ .++|++|++++|+++.++.. +..+++|++|++++|.+....+. +..+++|+.|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 34555555555555332 24455555555555544432 34445555555554443322222 33444444444444433
Q ss_pred cccccccccCCcccceeecccc
Q 004993 405 LVETHSSIQYLSKLVTLDMRLC 426 (720)
Q Consensus 405 ~~~~p~~l~~l~~L~~L~L~~n 426 (720)
.+..+..+..+++|+.|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS
T ss_pred cccCHHHhhCCcccCEEECcCC
Confidence 3322222333334444444333
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.36 E-value=1e-14 Score=166.82 Aligned_cols=244 Identities=12% Similarity=0.004 Sum_probs=150.3
Q ss_pred CCCCCccEEEeeCCCCcccc----cCCcccccCceEEEecCCCCCCCC-----CCC-CCCCccEEEccCCCcccccCCCC
Q 004993 297 KKMPRLRFLKFHGENKFKIS----HFEGEAFTELRYLYWDGYPSKSLP-----PVI-RLDTLISLQLRESKVEQLWDGVP 366 (720)
Q Consensus 297 ~~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~lp-----~~~-~l~~L~~L~L~~n~i~~l~~~~~ 366 (720)
.++++|+.|++++|.+.+.. +.....+++|++|++++|.+..+. ..+ ++++|++|++++|.+..++..+.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 47888899998888654321 111223788888888888876332 222 57888899998888888887788
Q ss_pred CCCCccEEecCCCcCCC---CC-CCCcCCcccceeecccccccccccccccCCcccceeecccccccccc-ccccCCCCC
Q 004993 367 NLVNLKEIDLSYSRQLK---KL-PDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL-PSSLCELIS 441 (720)
Q Consensus 367 ~L~~L~~L~Ls~n~~~~---~~-p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~ 441 (720)
.+++|++|++++..... .. ..+..+++|+.|.++++ ....+|..+..+++|++|++++|.+.... +..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 88888888887533221 11 12667778888888764 34556677777888888888887743322 233567788
Q ss_pred CcEEeccCCCCCCccchhccCCCCCCEEcccC----------CcCcCc--CCC---CCCCccEEec--------------
Q 004993 442 LQRLYLSGCSNLRRIPESIINLSKLELLHLKN----------CSKLLS--LPE---LPCNLFSVGV-------------- 492 (720)
Q Consensus 442 L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~----------~~~l~~--lp~---lp~~L~~L~~-------------- 492 (720)
|++|+++++...+.++.....+++|++|++++ |..++. ++. ..++|+.|.+
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 88888874433334455456677888888874 444332 111 1244555544
Q ss_pred cCCCccccccCc----ccccccC-----CCCCccccccccccccc--hhhHHHHHHHHHH
Q 004993 493 RRCTSLEALSSF----SFLFSAM-----SPHNDQYFNLSDCLKLD--QNELKGIAEDALQ 541 (720)
Q Consensus 493 ~~~~~L~~L~l~----~N~l~~~-----~~~~l~~l~~L~~L~L~--~N~l~~~~~~~~~ 541 (720)
.+|++|+.|+++ .|.+++. ++..+..+++|+.|+++ .|.+++..+..+.
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence 125667777764 4455442 11223456677777775 2335554444443
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=8.5e-13 Score=125.85 Aligned_cols=127 Identities=19% Similarity=0.129 Sum_probs=55.5
Q ss_pred CCCccEEEccCCCcccccCCCCCC-CCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeec
Q 004993 345 LDTLISLQLRESKVEQLWDGVPNL-VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM 423 (720)
Q Consensus 345 l~~L~~L~L~~n~i~~l~~~~~~L-~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 423 (720)
+.+|++|++++|+++.++. +..+ ++|++|++++|.+... +.+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 3344444444444444332 2222 2444444444443322 33444444444444444433221122244555555555
Q ss_pred ccccccccccc--ccCCCCCCcEEeccCCCCCCccchh----ccCCCCCCEEcccCCc
Q 004993 424 RLCKNLNRLPS--SLCELISLQRLYLSGCSNLRRIPES----IINLSKLELLHLKNCS 475 (720)
Q Consensus 424 ~~n~~~~~lp~--~l~~l~~L~~L~L~~n~~~~~lp~~----l~~l~~L~~L~L~~~~ 475 (720)
++|.+ +.+|. .+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|.
T Consensus 96 ~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 96 TNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 55433 33333 4445555555555555432 33332 4455555555555543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=5.2e-12 Score=120.41 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=99.3
Q ss_pred ccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeecccc
Q 004993 348 LISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 426 (720)
Q Consensus 348 L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 426 (720)
.+.+++++++++.+|..+. ++|++|++++|.+....+. +..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4678888888888886554 6888888888886655554 678888888888888776555556788888888888888
Q ss_pred ccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcC
Q 004993 427 KNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSL 480 (720)
Q Consensus 427 ~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l 480 (720)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+.....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 766655556778888888888888765444444677888888888888765443
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.3e-12 Score=124.69 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=77.0
Q ss_pred ccCceEEEecCCCCCCCCCCCCCC-CccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecc
Q 004993 323 FTELRYLYWDGYPSKSLPPVIRLD-TLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLK 400 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~~~l~-~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~ 400 (720)
+.+|+.|++++|.+..+|....+. +|++|++++|.++.+ ..+..+++|++|++++|.+....+. +..+++|++|+++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 445555555555555554433333 666666666666665 4566666666666666665543334 3666666677776
Q ss_pred cccccccccc--cccCCcccceeeccccccccccccc----cCCCCCCcEEeccCCCC
Q 004993 401 ACSSLVETHS--SIQYLSKLVTLDMRLCKNLNRLPSS----LCELISLQRLYLSGCSN 452 (720)
Q Consensus 401 ~~~~~~~~p~--~l~~l~~L~~L~L~~n~~~~~lp~~----l~~l~~L~~L~L~~n~~ 452 (720)
+|.+ +.+|. .+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|..
T Consensus 97 ~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 97 NNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6654 33444 5667777777777777543 44543 66777777777777653
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=1.4e-13 Score=157.53 Aligned_cols=97 Identities=18% Similarity=0.094 Sum_probs=48.1
Q ss_pred cccccCCCCCCcEEeccCCCCCCc-cchhccCCCCCCEEcccCCcCcCcCCC---CCCCccEEec---------------
Q 004993 432 LPSSLCELISLQRLYLSGCSNLRR-IPESIINLSKLELLHLKNCSKLLSLPE---LPCNLFSVGV--------------- 492 (720)
Q Consensus 432 lp~~l~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~~~~l~~lp~---lp~~L~~L~~--------------- 492 (720)
+|..+..+++|++|+|++|.+... ++..+..+++|+.|++++|-....++. ..++|+.|.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 333333556677777777663322 223345667777777766611111111 1234555544
Q ss_pred --------cCCCccccccCcccccccCCCCCcc-ccccccccccc
Q 004993 493 --------RRCTSLEALSSFSFLFSAMSPHNDQ-YFNLSDCLKLD 528 (720)
Q Consensus 493 --------~~~~~L~~L~l~~N~l~~~~~~~l~-~l~~L~~L~L~ 528 (720)
.+|++|+.|.+..|.+++..+..+. .+++|+.|+++
T Consensus 361 ~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 1256666665555555443332222 35566666666
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=1.4e-11 Score=129.87 Aligned_cols=213 Identities=15% Similarity=0.141 Sum_probs=122.4
Q ss_pred CCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--C--------CCCccEEEccCCCcccccC-CCCC
Q 004993 299 MPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--R--------LDTLISLQLRESKVEQLWD-GVPN 367 (720)
Q Consensus 299 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~--------l~~L~~L~L~~n~i~~l~~-~~~~ 367 (720)
+++|+.|+|++|.+... ....+.++.++.+.+..+ .+|... + +++|+.|+|+. +++.+++ .|.+
T Consensus 48 l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEe-cCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 78899999999887621 111122333344444443 334333 4 66666666666 6666653 3666
Q ss_pred CCCccEEecCCCcCCCCCCC-CcCCcccceeecccccc-----------------c---------ccccc----------
Q 004993 368 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSS-----------------L---------VETHS---------- 410 (720)
Q Consensus 368 L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~-----------------~---------~~~p~---------- 410 (720)
+++|+.|++++|.+....+. |..+.++..+.+..... + +.++.
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 66666666666654433332 55555554444332100 0 00000
Q ss_pred -----------------cc-cCCcccceeeccccccccccccccCCCCCCcEEeccCCCCCCccchhccCCCCCC-EEcc
Q 004993 411 -----------------SI-QYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLE-LLHL 471 (720)
Q Consensus 411 -----------------~l-~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~-~L~L 471 (720)
.+ ..+++|+.|+|++|.+...-+..|.++++|+.|+|.+| +...-+..|.++++|+ .+++
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence 00 12677888888876644444445777788888888775 3333334577777887 8887
Q ss_pred cCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccc
Q 004993 472 KNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK 526 (720)
Q Consensus 472 ~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~ 526 (720)
.+ .+..++.. .+.+|++|+.+++++|.+....+..|..+++|+.+.
T Consensus 282 ~~--~l~~I~~~-------aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA--SVTAIEFG-------AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CT--TCCEECTT-------TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc--cceEEchh-------hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 76 34444421 577888888888877777777777777777776553
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=1.6e-13 Score=156.94 Aligned_cols=168 Identities=14% Similarity=0.000 Sum_probs=75.9
Q ss_pred CCCCccEEecCCCcCCCCC-CC-CcCCcccceeecccccccccccccccCCcccceeecccc---------ccccccccc
Q 004993 367 NLVNLKEIDLSYSRQLKKL-PD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC---------KNLNRLPSS 435 (720)
Q Consensus 367 ~L~~L~~L~Ls~n~~~~~~-p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n---------~~~~~lp~~ 435 (720)
.+++|++|++++|.+.... +. +..+++|+.|++++|.....++.....+++|+.|++++| .........
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 3456666666665522111 11 335556666666655111112222223555666655321 111111111
Q ss_pred c-CCCCCCcEEeccCCCCCCccchhcc-CCCCCCEEccc-----CCcCcCcCCC---------CCCCccEEeccC-----
Q 004993 436 L-CELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLK-----NCSKLLSLPE---------LPCNLFSVGVRR----- 494 (720)
Q Consensus 436 l-~~l~~L~~L~L~~n~~~~~lp~~l~-~l~~L~~L~L~-----~~~~l~~lp~---------lp~~L~~L~~~~----- 494 (720)
+ ..+++|+.|.+.+|.+....+..+. .+++|+.|+++ +|..++..|. ..++|+.|++++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~ 446 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDK 446 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHH
Confidence 1 1245566665554444333333333 46677777776 3444443221 113455555543
Q ss_pred --------CCccccccCcccccccCCCCCc-cccccccccccchhhHHH
Q 004993 495 --------CTSLEALSSFSFLFSAMSPHND-QYFNLSDCLKLDQNELKG 534 (720)
Q Consensus 495 --------~~~L~~L~l~~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~ 534 (720)
+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 4556666666655543322222 335556666666665543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=4e-14 Score=137.96 Aligned_cols=131 Identities=22% Similarity=0.232 Sum_probs=93.1
Q ss_pred CCCCCCCC-CCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccccccccccccc
Q 004993 336 SKSLPPVI-RLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQ 413 (720)
Q Consensus 336 ~~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~ 413 (720)
++.+|..+ .+++|++|++++|.++.+| .+..+++|++|++++|.+. .+|. +..+++|+.|++++|.+.+ +| .+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 44455444 5677777777777777776 6777778888888877655 4555 5566788888888876654 44 577
Q ss_pred CCcccceeeccccccccccc-cccCCCCCCcEEeccCCCCCCccch----------hccCCCCCCEEc
Q 004993 414 YLSKLVTLDMRLCKNLNRLP-SSLCELISLQRLYLSGCSNLRRIPE----------SIINLSKLELLH 470 (720)
Q Consensus 414 ~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~----------~l~~l~~L~~L~ 470 (720)
.+++|+.|++++|.+....+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 88888888888886543222 3677888888888888876655544 267888999887
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=4e-13 Score=130.77 Aligned_cols=146 Identities=21% Similarity=0.168 Sum_probs=102.0
Q ss_pred CcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeecccccccccccccc
Q 004993 357 KVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSL 436 (720)
Q Consensus 357 ~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l 436 (720)
.++.+|..+..+++|++|++++|.+.. +|.+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ +| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cc
Confidence 555666677888888888888887655 667778888888888888655 577777777888888888886544 55 57
Q ss_pred CCCCCCcEEeccCCCCCCccc--hhccCCCCCCEEcccCCcCcCcCCCCC--CCccEEeccCCCccccccCcccccc
Q 004993 437 CELISLQRLYLSGCSNLRRIP--ESIINLSKLELLHLKNCSKLLSLPELP--CNLFSVGVRRCTSLEALSSFSFLFS 509 (720)
Q Consensus 437 ~~l~~L~~L~L~~n~~~~~lp--~~l~~l~~L~~L~L~~~~~l~~lp~lp--~~L~~L~~~~~~~L~~L~l~~N~l~ 509 (720)
..+++|++|++++|.+.+ +| ..+..+++|++|++++|+.....|... .......+..+++|+.|+ +|.++
T Consensus 112 ~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 778888888888886543 33 367888888888888887655544200 000001256677888776 44443
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.15 E-value=8.6e-10 Score=119.18 Aligned_cols=225 Identities=9% Similarity=0.041 Sum_probs=125.4
Q ss_pred ecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC-CCCCccEEEccCCCccccc-CCCCC
Q 004993 290 HLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRESKVEQLW-DGVPN 367 (720)
Q Consensus 290 ~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n~i~~l~-~~~~~ 367 (720)
.+...+|.++ +|+.+.+.+ .+..+....+..+++|+.+++.+|.++.+|... ...+|+.+.+.. .++.++ ..+.+
T Consensus 148 ~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~ 224 (401)
T 4fdw_A 148 SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLK 224 (401)
T ss_dssp EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTT
T ss_pred EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhC
Confidence 3444555553 466665554 333334444444666666666666666665544 445666666653 355554 33556
Q ss_pred CCCccEEecCCCcCCCCCCC--CcCCcccceeecccccccccccccccCCcccceeeccccccc-----cccccccCCCC
Q 004993 368 LVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNL-----NRLPSSLCELI 440 (720)
Q Consensus 368 L~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~-----~~lp~~l~~l~ 440 (720)
+++|+.+++..+ +..++. |.+ .+|+.+.+.. .....-...|.++++|+.+.+.++... ..-+..+..++
T Consensus 225 ~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 225 TSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp CTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred CCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 666666666554 223332 444 5566666633 232223455666667777766654322 12234455666
Q ss_pred CCcEEeccCCCCCCcc-chhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCcccc
Q 004993 441 SLQRLYLSGCSNLRRI-PESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYF 519 (720)
Q Consensus 441 ~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l 519 (720)
+|+.+.|.+ . +..+ ...+.++++|+.+.|..+ +..++.. .+.+| +|+.+.+.+|.+....+..+..+
T Consensus 301 ~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~-------aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 301 KLARFEIPE-S-IRILGQGLLGGNRKVTQLTIPAN--VTQINFS-------AFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TCCEECCCT-T-CCEECTTTTTTCCSCCEEEECTT--CCEECTT-------SSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred cCCeEEeCC-c-eEEEhhhhhcCCCCccEEEECcc--ccEEcHH-------hCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 777776663 2 3333 344556667777766543 3333321 57788 88888888887776666666666
Q ss_pred c-cccccccchhhHH
Q 004993 520 N-LSDCLKLDQNELK 533 (720)
Q Consensus 520 ~-~L~~L~L~~N~l~ 533 (720)
+ .+..+.+..|.+.
T Consensus 369 ~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 369 PDDITVIRVPAESVE 383 (401)
T ss_dssp CTTCCEEEECGGGHH
T ss_pred CCCccEEEeCHHHHH
Confidence 4 5677788777543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.9e-10 Score=108.73 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=47.5
Q ss_pred cEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeeccccc
Q 004993 349 ISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK 427 (720)
Q Consensus 349 ~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 427 (720)
+++++++|+++.+|..+. ++|++|+|++|.+....|. +..+++|++|+|++|.+.+..+..+..+++|++|+|++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 344444444444444332 4455555555544443333 4444444445544444433333334455555555555554
Q ss_pred cccccccccCCCCCCcEEeccCCCC
Q 004993 428 NLNRLPSSLCELISLQRLYLSGCSN 452 (720)
Q Consensus 428 ~~~~lp~~l~~l~~L~~L~L~~n~~ 452 (720)
+.+..+..+..+++|++|+|++|.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 3333333344555555555555543
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.11 E-value=7.7e-10 Score=119.55 Aligned_cols=224 Identities=11% Similarity=0.058 Sum_probs=166.9
Q ss_pred eecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCCcccccCCCC
Q 004993 289 IHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESKVEQLWDGVP 366 (720)
Q Consensus 289 ~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~ 366 (720)
..+...+|.++ +|+.+.+..+ +..+....+.. .+|+.+.+.. .++.++... ++.+|+.++++.|+++.++....
T Consensus 125 ~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF 200 (401)
T 4fdw_A 125 KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF 200 (401)
T ss_dssp CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE
Confidence 34556788885 7999998765 55545555554 4699999986 677777554 78999999999999999987655
Q ss_pred CCCCccEEecCCCcCCCCCCC--CcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcE
Q 004993 367 NLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 444 (720)
Q Consensus 367 ~L~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~ 444 (720)
...+|+.+.+..+ +..++. |.++++|+.+.+..+ ....-...|.+ .+|+.+.+.+ .....-+..+.++++|+.
T Consensus 201 ~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 201 VYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAE 275 (401)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCE
T ss_pred eecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCE
Confidence 6799999999865 444554 889999999999874 33333345666 7899999963 333334567888999999
Q ss_pred EeccCCCCC-----CccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCcccc
Q 004993 445 LYLSGCSNL-----RRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYF 519 (720)
Q Consensus 445 L~L~~n~~~-----~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l 519 (720)
+.+.++... ..-+..+.++++|+.+.|.++ +..++.. .+.+|++|+.+.+..| ++......|..+
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~-------aF~~c~~L~~l~lp~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQG-------LLGGNRKVTQLTIPAN-VTQINFSAFNNT 345 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhh-------hhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence 999886543 233466888999999999852 5555542 6889999999999665 666667778888
Q ss_pred ccccccccchhhH
Q 004993 520 NLSDCLKLDQNEL 532 (720)
Q Consensus 520 ~~L~~L~L~~N~l 532 (720)
+|+.+.+.+|.+
T Consensus 346 -~L~~l~l~~n~~ 357 (401)
T 4fdw_A 346 -GIKEVKVEGTTP 357 (401)
T ss_dssp -CCCEEEECCSSC
T ss_pred -CCCEEEEcCCCC
Confidence 899999988854
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=3.6e-10 Score=107.28 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=44.7
Q ss_pred EEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeecccccc
Q 004993 350 SLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKN 428 (720)
Q Consensus 350 ~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~ 428 (720)
.++++++++..+|..+. ++|++|+|++|.+....|. +..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 44444444444444332 4455555555544433333 44444444444444443332222234455555555554443
Q ss_pred ccccccccCCCCCCcEEeccCCC
Q 004993 429 LNRLPSSLCELISLQRLYLSGCS 451 (720)
Q Consensus 429 ~~~lp~~l~~l~~L~~L~L~~n~ 451 (720)
.+..+..+..+++|++|+|++|.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC
T ss_pred ceeCHHHhccccCCCEEEeCCCC
Confidence 32222234445555555555544
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=3.9e-10 Score=106.65 Aligned_cols=104 Identities=16% Similarity=0.082 Sum_probs=81.4
Q ss_pred ceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccc-cCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeeccccc
Q 004993 326 LRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQL-WDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACS 403 (720)
Q Consensus 326 L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l-~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~ 403 (720)
.+.++++++.++.+|..+ .++|++|+|++|+|+.+ |..+..+++|++|+|++|++....+. +..+++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 467788888888888765 47888888888888877 45678888888888888887665555 6788888888888887
Q ss_pred ccccccccccCCcccceeecccccccc
Q 004993 404 SLVETHSSIQYLSKLVTLDMRLCKNLN 430 (720)
Q Consensus 404 ~~~~~p~~l~~l~~L~~L~L~~n~~~~ 430 (720)
+.+..+..+..+++|+.|+|++|.+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 766555568888888888888886543
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=5.9e-10 Score=105.82 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=75.9
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEccCCCcccc-cCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccc
Q 004993 327 RYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQL-WDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSS 404 (720)
Q Consensus 327 ~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l-~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~ 404 (720)
+.++++++.++.+|..+. ++|++|+|++|+++.+ |..+..+++|++|+|++|++....+. +..+++|+.|+|++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 567777777777877653 7788888888888877 45677888888888888876655444 67788888888888876
Q ss_pred cccccccccCCcccceeeccccccc
Q 004993 405 LVETHSSIQYLSKLVTLDMRLCKNL 429 (720)
Q Consensus 405 ~~~~p~~l~~l~~L~~L~L~~n~~~ 429 (720)
.+..+..+..+++|+.|+|++|.+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ceeCHHHhccccCCCEEEeCCCCcc
Confidence 6544445788888888888887643
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=5.8e-10 Score=117.50 Aligned_cols=202 Identities=12% Similarity=0.009 Sum_probs=121.0
Q ss_pred ecCchhhCC--------CCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCCc-
Q 004993 290 HLNSSTFKK--------MPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESKV- 358 (720)
Q Consensus 290 ~~~~~~f~~--------l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~i- 358 (720)
.++..+|.+ +++|+.|+|.+ .+..+....+..+++|+.|++.+|.+..++... +..++..+.+..+..
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 345556666 67777776666 555555555555666666666666666665544 344444444433211
Q ss_pred ---cccc-CCCCCCCCcc-EEecCCCcCC-----------CC---------CC-----CC-cCCcccceeeccccccccc
Q 004993 359 ---EQLW-DGVPNLVNLK-EIDLSYSRQL-----------KK---------LP-----DL-SQARNLENLLLKACSSLVE 407 (720)
Q Consensus 359 ---~~l~-~~~~~L~~L~-~L~Ls~n~~~-----------~~---------~p-----~l-~~l~~L~~L~L~~~~~~~~ 407 (720)
..+. ..+.++.+|+ .+.+.....+ .. +. .+ ..+++|+.|++++|.+...
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I 241 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI 241 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee
Confidence 1111 1122233333 2222111000 00 00 00 1278999999998876665
Q ss_pred ccccccCCcccceeeccccccccccccccCCCCCCc-EEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCC
Q 004993 408 THSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ-RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCN 486 (720)
Q Consensus 408 ~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~-~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~ 486 (720)
.+..|.++++|+.|++.+| +...-+..|.++++|+ .+++.+ .....-+..|.++++|+.|++++|+. ..++..
T Consensus 242 ~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i-~~I~~~--- 315 (329)
T 3sb4_A 242 PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI-TTLGDE--- 315 (329)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC-CEECTT---
T ss_pred cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc-Cccchh---
Confidence 5667899999999999876 3333445688899999 999987 44444457788999999999988654 444431
Q ss_pred ccEEeccCCCcccccc
Q 004993 487 LFSVGVRRCTSLEALS 502 (720)
Q Consensus 487 L~~L~~~~~~~L~~L~ 502 (720)
.+.+|++|+.+.
T Consensus 316 ----aF~~~~~L~~ly 327 (329)
T 3sb4_A 316 ----LFGNGVPSKLIY 327 (329)
T ss_dssp ----TTCTTCCCCEEE
T ss_pred ----hhcCCcchhhhc
Confidence 688899998875
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=3.6e-11 Score=128.76 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=100.3
Q ss_pred ccCceEEEecCCCCCCCCCC-----C--CCCCccEEEccCCCccc--ccCCCCCCCCccEEecCCCcCCCCCCC-C----
Q 004993 323 FTELRYLYWDGYPSKSLPPV-----I--RLDTLISLQLRESKVEQ--LWDGVPNLVNLKEIDLSYSRQLKKLPD-L---- 388 (720)
Q Consensus 323 l~~L~~L~l~~~~~~~lp~~-----~--~l~~L~~L~L~~n~i~~--l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l---- 388 (720)
++.|+.|++++|.++..... + ...+|++|+|++|.+.. +..-...+++|++|+|++|.+...... +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 67889999999887653221 1 23688888888888763 222233456788888888865432211 2
Q ss_pred -cCCcccceeecccccccc----cccccccCCcccceeecccccccc----ccccccCCCCCCcEEeccCCCCCC----c
Q 004993 389 -SQARNLENLLLKACSSLV----ETHSSIQYLSKLVTLDMRLCKNLN----RLPSSLCELISLQRLYLSGCSNLR----R 455 (720)
Q Consensus 389 -~~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~~~~----~lp~~l~~l~~L~~L~L~~n~~~~----~ 455 (720)
...++|++|+|++|.+.. .++..+..+++|++|+|++|.+.. .++..+...++|++|+|++|.+.. .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 235678888888886543 234445667778888888876543 234455666778888888876543 3
Q ss_pred cchhccCCCCCCEEcccCCcCc
Q 004993 456 IPESIINLSKLELLHLKNCSKL 477 (720)
Q Consensus 456 lp~~l~~l~~L~~L~L~~~~~l 477 (720)
++..+...++|++|+|++|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 4445556677888888887543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=8.2e-09 Score=109.41 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=45.5
Q ss_pred EccCC-CcccccCCCCCCCCccEEecCC-CcCCCCCCC-CcCCcccceeecccccccccccccccCCcccceeecccccc
Q 004993 352 QLRES-KVEQLWDGVPNLVNLKEIDLSY-SRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKN 428 (720)
Q Consensus 352 ~L~~n-~i~~l~~~~~~L~~L~~L~Ls~-n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~ 428 (720)
+++++ +++.+|. +..+++|++|+|++ |.+....+. |..+++|+.|+|++|.+.+..|..|..|++|+.|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4444554 45555555555553 443333322 44555555555555544444444455555555555555543
Q ss_pred ccccccccCCCCCCcEEeccCCCC
Q 004993 429 LNRLPSSLCELISLQRLYLSGCSN 452 (720)
Q Consensus 429 ~~~lp~~l~~l~~L~~L~L~~n~~ 452 (720)
.+..+..+..++ |+.|+|.+|.+
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ceeCHHHcccCC-ceEEEeeCCCc
Confidence 322222222222 55555555543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=3.1e-10 Score=121.49 Aligned_cols=156 Identities=15% Similarity=0.056 Sum_probs=93.1
Q ss_pred CCCccEEEeeCCCCcccccCCccc-----ccCceEEEecCCCCCCC--CCCC-CCCCccEEEccCCCcccc-----cCCC
Q 004993 299 MPRLRFLKFHGENKFKISHFEGEA-----FTELRYLYWDGYPSKSL--PPVI-RLDTLISLQLRESKVEQL-----WDGV 365 (720)
Q Consensus 299 l~~L~~L~L~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~l--p~~~-~l~~L~~L~L~~n~i~~l-----~~~~ 365 (720)
+++|+.|++++|.+.......... .++|+.|++++|.++.. .... .+.+|++|+|++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456777888777765432222111 35777888887775431 1111 356777888888777532 1222
Q ss_pred -CCCCCccEEecCCCcCCCC----CCC-CcCCcccceeeccccccccc----ccccccCCcccceeecccccccc----c
Q 004993 366 -PNLVNLKEIDLSYSRQLKK----LPD-LSQARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNLN----R 431 (720)
Q Consensus 366 -~~L~~L~~L~Ls~n~~~~~----~p~-l~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~n~~~~----~ 431 (720)
...++|++|+|++|.+... ++. +...++|++|+|++|.+... ++..+...++|+.|+|++|.+.. .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2456778888887765321 111 35567778888887765432 34556666778888888776543 2
Q ss_pred cccccCCCCCCcEEeccCCCCCC
Q 004993 432 LPSSLCELISLQRLYLSGCSNLR 454 (720)
Q Consensus 432 lp~~l~~l~~L~~L~L~~n~~~~ 454 (720)
++..+...++|++|+|++|.+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 33444456778888888776544
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=2.4e-08 Score=105.71 Aligned_cols=104 Identities=19% Similarity=0.077 Sum_probs=76.4
Q ss_pred cEEecCCC-cCCCCCCCCcCCcccceeeccc-ccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccC
Q 004993 372 KEIDLSYS-RQLKKLPDLSQARNLENLLLKA-CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG 449 (720)
Q Consensus 372 ~~L~Ls~n-~~~~~~p~l~~l~~L~~L~L~~-~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 449 (720)
..++++++ .+ ..+|.+..+++|+.|+|++ |.+.+..+..|+.|++|+.|+|++|.+.+..|..+.+|++|+.|+|++
T Consensus 11 ~~v~~~~~n~l-~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCC-CccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 34677776 44 4455588888888888886 766666667788888888888888887777777788888888888888
Q ss_pred CCCCCccchhccCCCCCCEEcccCCcCc
Q 004993 450 CSNLRRIPESIINLSKLELLHLKNCSKL 477 (720)
Q Consensus 450 n~~~~~lp~~l~~l~~L~~L~L~~~~~l 477 (720)
|.+.+..|..+..++ |+.|+|.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 876544444444444 888888887654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=1.4e-08 Score=107.85 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=45.0
Q ss_pred hCCCCCccEEEeeCCCCcc--c-------ccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccc-cCCC
Q 004993 296 FKKMPRLRFLKFHGENKFK--I-------SHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQL-WDGV 365 (720)
Q Consensus 296 f~~l~~L~~L~L~~~~~~~--~-------~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l-~~~~ 365 (720)
..++++|+.|.+.+..... . .......+++|+.|++++|.-..++. +.+++|+.|++..+.+..- ...+
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHH
Confidence 4567888888886542210 0 00111226778888887764223444 3467777777777665421 1112
Q ss_pred --CCCCCccEEecC
Q 004993 366 --PNLVNLKEIDLS 377 (720)
Q Consensus 366 --~~L~~L~~L~Ls 377 (720)
..+++|++|+|+
T Consensus 214 ~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 214 LGSDLPNLEKLVLY 227 (362)
T ss_dssp HHSBCTTCCEEEEE
T ss_pred HHccCCCCcEEEEe
Confidence 256777777765
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=5.2e-08 Score=103.37 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=26.9
Q ss_pred CCCCCccEEecCCCcCCCCCCCCcCCcccceeeccccccccccccccc--CCcccceeecc
Q 004993 366 PNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQ--YLSKLVTLDMR 424 (720)
Q Consensus 366 ~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~--~l~~L~~L~L~ 424 (720)
..+++|+.|+|++|... .++.+. +++|+.|++..|.+.......+. .+++|+.|+|+
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 44556666666555211 222222 55666666655543332222222 45556666554
No 153
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.24 E-value=4.5e-06 Score=90.32 Aligned_cols=213 Identities=11% Similarity=0.029 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhCCCCCCccccccchHHHHHhcC--CCeEEEEEecCCCh--------HHHHHHHccCCCC---C--CCcE
Q 004993 4 HLRQELLSTLLNDDGNVKIIPNIGLNFESKRLT--RKKVLIVFDDVTDR--------KQIEFLIGELDSF---A--SGSL 68 (720)
Q Consensus 4 ~lq~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~--------~~~~~l~~~~~~~---~--~gSr 68 (720)
.+.++++.++.........+.+.....+.+.++ +++++|||||++.. +.+..+...+... + ..-.
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 456677777644322111223344566666665 78999999999763 3344433322111 2 3445
Q ss_pred EEEEeCChhHHhhcC---------CCcEEEcCCCCHHHHHHHHHHh---hcCCCCCChhHHHHHHHHHHHhc------CC
Q 004993 69 IIITTRDKQVLINCW---------ADKIYEVKELADADALKLFSRC---AFRQDHPVACYMELTYKIIKYAQ------GV 130 (720)
Q Consensus 69 IivTTR~~~v~~~~~---------~~~~~~l~~L~~~es~~LF~~~---af~~~~~~~~~~~l~~~i~~~c~------Gl 130 (720)
||+|||+..+..... ....+.+++++.++++++|... +|...... .+....++++|+ |.
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCc
Confidence 888998766432111 1234999999999999999765 44322222 355678889999 99
Q ss_pred CchHHHHhhh-hc-----C---CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhhhhhcccccccC----CCCHHH
Q 004993 131 PLALKVLGLF-LS-----A---RRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACYFV----GANKDF 197 (720)
Q Consensus 131 PLal~~lg~~-L~-----~---~~~~~W~~~l~~L~~~~~~~i~~~l~~syd~L~~~~k~~fl~~a~f~~----~~~~~~ 197 (720)
|..+..+... .. + .+.+.+..++..... ...+.-+++.||...+.++..+|.++. .+....
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~ 332 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGL 332 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHH
Confidence 9765544332 11 1 234555555443220 234555778999999999999997652 133433
Q ss_pred HHHHH-----HhCCCCc------ccchhhhhcccceEEe
Q 004993 198 VINYF-----DASDFFP------EIGLGRLVDKSLITIS 225 (720)
Q Consensus 198 l~~~w-----~~~g~~~------~~~~~~L~~~~li~~~ 225 (720)
+...+ ...|.-+ ...++.|++.++|...
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 333 LRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 33222 2234221 2347889999999875
No 154
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.22 E-value=2.9e-06 Score=89.66 Aligned_cols=189 Identities=15% Similarity=0.095 Sum_probs=115.3
Q ss_pred CeEEEEEecCCChH-----HH-HHHHccCCCCCCCcEEEEEeCChhHHhhc-----------C-CCcEEEcCCCCHHHHH
Q 004993 38 KKVLIVFDDVTDRK-----QI-EFLIGELDSFASGSLIIITTRDKQVLINC-----------W-ADKIYEVKELADADAL 99 (720)
Q Consensus 38 kr~LlVLDDv~~~~-----~~-~~l~~~~~~~~~gSrIivTTR~~~v~~~~-----------~-~~~~~~l~~L~~~es~ 99 (720)
++++|||||++... +| ..+..... ..++.++|+|+|........ + ....+.+.+|+.+|+.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 49999999997532 22 33322111 12478999999987643321 1 1257899999999999
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcC-CCHHHHHHH-HHHHhcCCCchHHHHH-HHhhc--C
Q 004993 100 KLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSA-RRKEEWESA-ITKLETVPHMEIQDVL-KISYD--G 174 (720)
Q Consensus 100 ~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~-~~~~~W~~~-l~~L~~~~~~~i~~~l-~~syd--~ 174 (720)
+++...+-......++. ..|+..|+|+|+++..++..+.. .+..+|-.. .+... ..+...+ .+.++ .
T Consensus 216 ~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 287 (357)
T 2fna_A 216 EFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREI 287 (357)
T ss_dssp HHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhcccc
Confidence 99987432111112222 78899999999999999887643 344444221 11110 1111112 22222 6
Q ss_pred CChhhhhhhcccccccCCCCHHHHHHHHH-hCC--CCc---ccchhhhhcccceEEeCCeEEe-eHHHHHH
Q 004993 175 LDYVEQAMFLDIACYFVGANKDFVINYFD-ASD--FFP---EIGLGRLVDKSLITISCNKIRM-HDLLQDM 238 (720)
Q Consensus 175 L~~~~k~~fl~~a~f~~~~~~~~l~~~w~-~~g--~~~---~~~~~~L~~~~li~~~~~~~~m-HdLl~d~ 238 (720)
|++..+..+..+|+ . . +...+..... ..| .-. ...++.|++.++|....+.+.+ |.++++.
T Consensus 288 l~~~~~~~l~~la~-g-~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 288 ARKRYLNIMRTLSK-C-G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp GHHHHHHHHHHHTT-C-B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred ccHHHHHHHHHHHc-C-C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 78889999999998 2 2 5555554332 234 221 3458899999999887667774 6677654
No 155
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.18 E-value=2.2e-05 Score=82.61 Aligned_cols=202 Identities=12% Similarity=0.072 Sum_probs=119.7
Q ss_pred chHHHHHhcCC-CeEEEEEecCCChH---------HHHHHHccCCCCCCCcEEEEEeCChhHHhhc-----------C-C
Q 004993 27 GLNFESKRLTR-KKVLIVFDDVTDRK---------QIEFLIGELDSFASGSLIIITTRDKQVLINC-----------W-A 84 (720)
Q Consensus 27 ~~~~i~~~L~~-kr~LlVLDDv~~~~---------~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~-----------~-~ 84 (720)
....+.+..+. ++++|||||++... .+..+...... .++.++|+|++...+.... + .
T Consensus 116 ~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~ 194 (350)
T 2qen_A 116 VFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRI 194 (350)
T ss_dssp HHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCC
T ss_pred HHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCc
Confidence 34445444432 39999999997633 23444332221 2578999999987643221 1 1
Q ss_pred CcEEEcCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcC-CCHHHHHH-HHHHHhcCCCc
Q 004993 85 DKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSA-RRKEEWES-AITKLETVPHM 162 (720)
Q Consensus 85 ~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~-~~~~~W~~-~l~~L~~~~~~ 162 (720)
...+.+.+|+.+|+.+++....-....... .+....++..|+|+|+++..++..+.. .+..++-. ..+.......
T Consensus 195 ~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 271 (350)
T 2qen_A 195 AGEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIM- 271 (350)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH-
Confidence 247899999999999999764321111111 346688999999999999999876533 33332211 1111110000
Q ss_pred hHHHHHHHhhcCCChhhhhhhcccccccCCCCHHHHHHHHHhC--CCCc---ccchhhhhcccceEEeCCeEEe-eHHHH
Q 004993 163 EIQDVLKISYDGLDYVEQAMFLDIACYFVGANKDFVINYFDAS--DFFP---EIGLGRLVDKSLITISCNKIRM-HDLLQ 236 (720)
Q Consensus 163 ~i~~~l~~syd~L~~~~k~~fl~~a~f~~~~~~~~l~~~w~~~--g~~~---~~~~~~L~~~~li~~~~~~~~m-HdLl~ 236 (720)
..+-.+.++ ++..+..+..+|+ .......+...+... |.-. ...++.|.+.++|...++.+.. |.+++
T Consensus 272 --~~l~~l~~~--~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~ 345 (350)
T 2qen_A 272 --GELEELRRR--SPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVA 345 (350)
T ss_dssp --HHHHHHHHH--CHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHH
T ss_pred --HHHHHHHhC--ChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHH
Confidence 111122222 7888999999998 224555565554322 3322 3458899999999887777776 45555
Q ss_pred HH
Q 004993 237 DM 238 (720)
Q Consensus 237 d~ 238 (720)
+.
T Consensus 346 ~~ 347 (350)
T 2qen_A 346 TV 347 (350)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.14 E-value=2.1e-05 Score=84.55 Aligned_cols=219 Identities=15% Similarity=0.060 Sum_probs=127.8
Q ss_pred cCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC--CCCCccEEEccCCCcccccCCCCCC
Q 004993 291 LNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI--RLDTLISLQLRESKVEQLWDGVPNL 368 (720)
Q Consensus 291 ~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~~L 368 (720)
+...+|.++++|+.+.+.++. ..+....+..+.+|+.+.+..+ ++.++... +...|+.+.+..+. ..+.+.....
T Consensus 153 i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~ 229 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSK 229 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTT
T ss_pred cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhhccc
Confidence 345678888888888886542 3334444555677777777654 44444433 56666666665443 2233333445
Q ss_pred CCccEEecCCCcCCCCCC--CCcCCcccceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEe
Q 004993 369 VNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 446 (720)
Q Consensus 369 ~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~ 446 (720)
.+|+.+.+..+. ..+. .+..+.+|+.+.+..+ ........+..+..|+.+...... .....+..+.+|+.+.
T Consensus 230 ~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 230 TGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVK 303 (394)
T ss_dssp CCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEE
T ss_pred CCCceEEECCCc--eecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccccccc
Confidence 667777665432 2222 2666777777777654 223334456666677766665432 1112355677777777
Q ss_pred ccCCCCCCcc-chhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCcccccccccc
Q 004993 447 LSGCSNLRRI-PESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCL 525 (720)
Q Consensus 447 L~~n~~~~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L 525 (720)
+..+ ...+ ...+.++++|+.++|.++ +..++.. .+.+|++|+.+.+..| ++......|..+.+|+.+
T Consensus 304 l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-------aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 304 LLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKR-------SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp ECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred cccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHH-------hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence 7653 3333 344667777888777542 3444431 5677888888877665 555555667777777777
Q ss_pred ccchh
Q 004993 526 KLDQN 530 (720)
Q Consensus 526 ~L~~N 530 (720)
++..+
T Consensus 372 ~lp~~ 376 (394)
T 4fs7_A 372 ELPKR 376 (394)
T ss_dssp EEEGG
T ss_pred EECCC
Confidence 77654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.06 E-value=5.1e-05 Score=81.51 Aligned_cols=85 Identities=11% Similarity=0.173 Sum_probs=50.3
Q ss_pred ccCCCCCCcEEeccCCCCCCccc-hhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCC
Q 004993 435 SLCELISLQRLYLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP 513 (720)
Q Consensus 435 ~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~ 513 (720)
.+.++++|+.+.+.. . ...++ ..+.++++|+.+.|..+ +..+... .+.+|.+|+.+.+..+ ++....
T Consensus 283 aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-------aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG--ITQILDD-------AFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEECTT-CCBCCG
T ss_pred ccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc--ccEehHh-------HhhCCCCCCEEEECcc-cCEEhH
Confidence 344555566665543 1 22232 33555666666666442 3333321 5778888888888654 555555
Q ss_pred CCccccccccccccchhh
Q 004993 514 HNDQYFNLSDCLKLDQNE 531 (720)
Q Consensus 514 ~~l~~l~~L~~L~L~~N~ 531 (720)
..|..+.+|+.+++.+|.
T Consensus 351 ~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp GGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECCce
Confidence 667778888888888764
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.02 E-value=3.2e-05 Score=83.11 Aligned_cols=216 Identities=11% Similarity=0.040 Sum_probs=143.2
Q ss_pred eecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCccccc-CCCCC
Q 004993 289 IHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLW-DGVPN 367 (720)
Q Consensus 289 ~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~ 367 (720)
..+...+|.++++|+.+.+..+ ...+....+..+..|+.+.+..+....-...+...+|+.+.+..+ ++.+. ..+..
T Consensus 174 ~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~ 251 (394)
T 4fs7_A 174 ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYG 251 (394)
T ss_dssp CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTT
T ss_pred ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccc
Confidence 4566788999999999998765 444445555667788887776654322222335678888888754 34443 45778
Q ss_pred CCCccEEecCCCcCCCCCCCCcCCcccceeecccccccccccccccCCcccceeecccccccccc-ccccCCCCCCcEEe
Q 004993 368 LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL-PSSLCELISLQRLY 446 (720)
Q Consensus 368 L~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~ 446 (720)
+.+|+.+.+..+...-....+..+..|+.+...... .....+..+.+|+.+.+..+ ...+ ...+.++++|+.++
T Consensus 252 ~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 252 CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp CSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEEC
T ss_pred cccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc--cceechhhhcCCCCCCEEE
Confidence 899999999876432222237888888888776542 12345778889999998754 3334 44577889999999
Q ss_pred ccCCCCCCcc-chhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccc
Q 004993 447 LSGCSNLRRI-PESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC 524 (720)
Q Consensus 447 L~~n~~~~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~ 524 (720)
|..+ ...+ ...+.++++|+.+.+..+ +..++.. .+.+|++|+.+.+..+- .. ....+...++|+.
T Consensus 327 lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-------aF~~C~~L~~i~lp~~~-~~-~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 327 LPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-------AFQGCINLKKVELPKRL-EQ-YRYDFEDTTKFKW 392 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TBTTCTTCCEEEEEGGG-GG-GGGGBCTTCEEEE
T ss_pred eCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHH-------HhhCCCCCCEEEECCCC-EE-hhheecCCCCCcE
Confidence 9753 4444 456888999999998764 4455432 68899999999887642 21 1233444454443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=9.4e-06 Score=75.88 Aligned_cols=86 Identities=12% Similarity=0.198 Sum_probs=43.7
Q ss_pred ccceeecccccccccccccccCCcccceeecccccccc-ccccccCCC----CCCcEEeccCCCCCCc-cchhccCCCCC
Q 004993 393 NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCEL----ISLQRLYLSGCSNLRR-IPESIINLSKL 466 (720)
Q Consensus 393 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l----~~L~~L~L~~n~~~~~-lp~~l~~l~~L 466 (720)
+|+.|++++|.+...--..+..+++|+.|+|++|..++ .--..+..+ ++|++|+|++|...+. --..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555433333344556666666666664322 111223332 2566677766653332 12234556667
Q ss_pred CEEcccCCcCcC
Q 004993 467 ELLHLKNCSKLL 478 (720)
Q Consensus 467 ~~L~L~~~~~l~ 478 (720)
++|+|++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 777776665443
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.76 E-value=0.00034 Score=75.05 Aligned_cols=127 Identities=13% Similarity=0.194 Sum_probs=79.7
Q ss_pred CcCCcccceeecccccccccccccccCCcccceeeccccccccccc-cccCCCCCCcEEeccCCCCCCcc-chhccCCCC
Q 004993 388 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELISLQRLYLSGCSNLRRI-PESIINLSK 465 (720)
Q Consensus 388 l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~ 465 (720)
|.++.+|+.+.+..+ ....-...+.++++|+.+.+.. . ...++ ..+.++.+|+.+.|..+ +..+ ...+.++++
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCC
Confidence 566777777777543 2222335677788888888863 2 33443 45778899999999764 4444 456888999
Q ss_pred CCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccCcccccccCCCCCccccccccccccchhh
Q 004993 466 LELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNE 531 (720)
Q Consensus 466 L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 531 (720)
|+.+.|..+ +..++.. .+.+|++|+.+.+.++.... ..+.....|+.+.+..|.
T Consensus 336 L~~i~ip~s--v~~I~~~-------aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPES-------AFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CCEEEECTT--CCBCCGG-------GGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred CCEEEECcc--cCEEhHh-------HhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 999998653 4555532 68899999999998865432 234456677777776653
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.75 E-value=0.00087 Score=71.32 Aligned_cols=66 Identities=8% Similarity=-0.024 Sum_probs=40.4
Q ss_pred ceecCchhhCCCCCccEEEeeCCCCcccccCCcccccCceEEEecCCCCCCCCCCC-CCCCccEEEccCC
Q 004993 288 EIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVI-RLDTLISLQLRES 356 (720)
Q Consensus 288 ~~~~~~~~f~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~L~~n 356 (720)
...+...+|.++.+|+.+.|..+ +..+....+..+ +|+.+.+..+ ++.++... ...+|+.+.+..+
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFPGA 123 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECCTT
T ss_pred ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCCCc
Confidence 34566788999999999999653 444444444444 4666655433 44444433 4456777777653
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.69 E-value=7.8e-06 Score=77.93 Aligned_cols=15 Identities=13% Similarity=-0.066 Sum_probs=7.5
Q ss_pred CCCccccccCccccc
Q 004993 494 RCTSLEALSSFSFLF 508 (720)
Q Consensus 494 ~~~~L~~L~l~~N~l 508 (720)
.+++|+.|+++.|.+
T Consensus 149 ~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 149 KNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HCSSCCEEECCCSSH
T ss_pred hCCCcCEEeccCCCC
Confidence 334555555555544
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=2e-05 Score=79.24 Aligned_cols=10 Identities=10% Similarity=0.428 Sum_probs=5.8
Q ss_pred CCHHHHHHHH
Q 004993 193 ANKDFVINYF 202 (720)
Q Consensus 193 ~~~~~l~~~w 202 (720)
++++.+++..
T Consensus 35 y~k~~ll~~i 44 (267)
T 3rw6_A 35 YDKAWLLSMI 44 (267)
T ss_dssp SCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 5666655554
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.68 E-value=6.8e-06 Score=78.37 Aligned_cols=86 Identities=12% Similarity=0.008 Sum_probs=46.5
Q ss_pred Ccccceeeccccccccc----ccccccCCcccceeeccccccccc----cccccCCCCCCcEEec--cCCCCCCc----c
Q 004993 391 ARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNLNR----LPSSLCELISLQRLYL--SGCSNLRR----I 456 (720)
Q Consensus 391 l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L--~~n~~~~~----l 456 (720)
.++|++|+|++|.+... +...+...++|++|+|++|.+... +...+...++|++|+| ++|.+... +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 34444444444443221 223344445666666666654332 3444555667777777 66654332 3
Q ss_pred chhccCCCCCCEEcccCCcC
Q 004993 457 PESIINLSKLELLHLKNCSK 476 (720)
Q Consensus 457 p~~l~~l~~L~~L~L~~~~~ 476 (720)
...+...++|++|+|++|..
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCcCEEeccCCCC
Confidence 44455567777777777653
No 165
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.68 E-value=0.0015 Score=69.55 Aligned_cols=210 Identities=15% Similarity=0.037 Sum_probs=126.3
Q ss_pred HHHHHHHHHhCCCCCC-ccccccchHHHHHhcCCCeEEEEEecCCChHH---HHH-HHccCCCCCCCcEEEEEeCChhHH
Q 004993 5 LRQELLSTLLNDDGNV-KIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQ---IEF-LIGELDSFASGSLIIITTRDKQVL 79 (720)
Q Consensus 5 lq~~ll~~l~~~~~~~-~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~---~~~-l~~~~~~~~~gSrIivTTR~~~v~ 79 (720)
+..+++.++.+..... ..........+.+.++.++.+|||||++.... .+. +..-+.+. .+.+||+||+.....
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchH
Confidence 4456667765443221 12234556778888888777999999986542 222 22222222 788999999976321
Q ss_pred hhc------CCCcEEEcCCCCHHHHHHHHHHhh---cCCCCCChhHHHHHHHHHHHhc---CCCc-hHHHHhhhh-----
Q 004993 80 INC------WADKIYEVKELADADALKLFSRCA---FRQDHPVACYMELTYKIIKYAQ---GVPL-ALKVLGLFL----- 141 (720)
Q Consensus 80 ~~~------~~~~~~~l~~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~i~~~c~---GlPL-al~~lg~~L----- 141 (720)
... .....+.+++++.++..+++...+ |......+ +....++++|+ |.|. |+..+-.+.
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 112389999999999999999874 33332233 34456777777 8887 444433322
Q ss_pred -cCCCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhhhhhcccccccCCCCH-HHHHHHHHhCCCCc------ccch
Q 004993 142 -SARRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACYFVGANK-DFVINYFDASDFFP------EIGL 213 (720)
Q Consensus 142 -~~~~~~~W~~~l~~L~~~~~~~i~~~l~~syd~L~~~~k~~fl~~a~f~~~~~~-~~l~~~w~~~g~~~------~~~~ 213 (720)
...+.+.+..+++.... ..+.-+++.|+.++|..+..++....+-+. +....+-...|..+ ...+
T Consensus 255 ~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 327 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDII 327 (384)
T ss_dssp SSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 12577888888877642 456677889999888888877761110111 12223333334221 2236
Q ss_pred hhhhcccceEEe
Q 004993 214 GRLVDKSLITIS 225 (720)
Q Consensus 214 ~~L~~~~li~~~ 225 (720)
..|.++++|...
T Consensus 328 ~~L~~~gli~~~ 339 (384)
T 2qby_B 328 SELDMFGIVKIR 339 (384)
T ss_dssp HHHHHTTSEEEE
T ss_pred HHHHhCCCEEEE
Confidence 788889998864
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=1.1e-05 Score=81.20 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=39.4
Q ss_pred cCCcccceeecccccccc--ccccccCCCCCCcEEeccCCCCCCccchhccCCC--CCCEEcccCCcCcCcCC
Q 004993 413 QYLSKLVTLDMRLCKNLN--RLPSSLCELISLQRLYLSGCSNLRRIPESIINLS--KLELLHLKNCSKLLSLP 481 (720)
Q Consensus 413 ~~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~--~L~~L~L~~~~~l~~lp 481 (720)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|+..+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345667777777666554 4445555667777777777654432 1233333 67777777776655444
No 167
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=1.7e-05 Score=74.16 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=24.1
Q ss_pred CCCCCC-CCCCccEEEccCCCcccc-cCCCCCCCCccEEecCCCc
Q 004993 338 SLPPVI-RLDTLISLQLRESKVEQL-WDGVPNLVNLKEIDLSYSR 380 (720)
Q Consensus 338 ~lp~~~-~l~~L~~L~L~~n~i~~l-~~~~~~L~~L~~L~Ls~n~ 380 (720)
.+|... .-.+|+.||+++|.|+.. -..+..+++|++|+|++|.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 345433 344677777777776532 1334556666666666654
No 168
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.23 E-value=0.00091 Score=65.70 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=73.3
Q ss_pred CCCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCChhHHh-h-cCCCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRDKQVLI-N-CWADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~-~-~~~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
.+++.+||+||++. ...++.+...+.....+.+||+||+...... . ......+++++++.+|..+++...+.....
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 34689999999964 5667777766655567889999997754321 1 122358999999999999999987754322
Q ss_pred CChhHHHHHHHHHHHhcCCCchHHHHhh
Q 004993 112 PVACYMELTYKIIKYAQGVPLALKVLGL 139 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~GlPLal~~lg~ 139 (720)
... .+....++++|+|.|..+..+..
T Consensus 204 ~~~--~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 204 AHE--PRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp CBC--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCC--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 211 34567899999999999877654
No 169
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.17 E-value=0.0043 Score=65.79 Aligned_cols=210 Identities=12% Similarity=0.002 Sum_probs=120.7
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHHhc--CCCeEEEEEecCCChH----H---HHHHHccCCCC--CCCcEEEEEe
Q 004993 5 LRQELLSTLLNDDGNVKIIPNIGLNFESKRL--TRKKVLIVFDDVTDRK----Q---IEFLIGELDSF--ASGSLIIITT 73 (720)
Q Consensus 5 lq~~ll~~l~~~~~~~~~~~~~~~~~i~~~L--~~kr~LlVLDDv~~~~----~---~~~l~~~~~~~--~~gSrIivTT 73 (720)
+..+++.++.................+.+.+ .+++.+|||||++... + +..+....... ..+.++|.||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 4455666664332211122334455666666 4568999999998653 2 22222222111 4567888888
Q ss_pred CChhH--------HhhcCCCcEEEcCCCCHHHHHHHHHHhh---cCCCCCChhHHHHHHHHHHHhc---CCCc-hHHHHh
Q 004993 74 RDKQV--------LINCWADKIYEVKELADADALKLFSRCA---FRQDHPVACYMELTYKIIKYAQ---GVPL-ALKVLG 138 (720)
Q Consensus 74 R~~~v--------~~~~~~~~~~~l~~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~i~~~c~---GlPL-al~~lg 138 (720)
+.... ...+. ...+.+++++.++..+++...+ +......+ +....++++++ |.|- |+..+.
T Consensus 175 ~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp SCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 87632 22211 2478999999999999998874 33322222 23466777887 9994 333333
Q ss_pred hhhc-----C---CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhhhhhcccccccCCC---CHHH----HHHHHH
Q 004993 139 LFLS-----A---RRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACYFVGA---NKDF----VINYFD 203 (720)
Q Consensus 139 ~~L~-----~---~~~~~W~~~l~~L~~~~~~~i~~~l~~syd~L~~~~k~~fl~~a~f~~~~---~~~~----l~~~w~ 203 (720)
.+.. + .+.+.++.+++... ...+.-++.+|+.+++..++.++....+. .... ...+..
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 2221 2 36778888777653 23566678899999998888888655442 2222 222223
Q ss_pred hCCCCc------ccchhhhhcccceEEe
Q 004993 204 ASDFFP------EIGLGRLVDKSLITIS 225 (720)
Q Consensus 204 ~~g~~~------~~~~~~L~~~~li~~~ 225 (720)
..|..+ ...++.|...+++...
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 324 TLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 334222 1236777888888763
No 170
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.12 E-value=0.0025 Score=67.58 Aligned_cols=190 Identities=13% Similarity=0.022 Sum_probs=112.1
Q ss_pred cchHHHHHhcC--CCeEEEEEecCCCh------HHHHHHHccCCC-CCCCcEEEEEeCChhHHhhcCC-------CcEEE
Q 004993 26 IGLNFESKRLT--RKKVLIVFDDVTDR------KQIEFLIGELDS-FASGSLIIITTRDKQVLINCWA-------DKIYE 89 (720)
Q Consensus 26 ~~~~~i~~~L~--~kr~LlVLDDv~~~------~~~~~l~~~~~~-~~~gSrIivTTR~~~v~~~~~~-------~~~~~ 89 (720)
.....+.+.++ +++.+||||+++.. +.+..+...... ...+..||+||++......+.. ...+.
T Consensus 114 ~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~ 193 (386)
T 2qby_A 114 ELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEII 193 (386)
T ss_dssp HHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEE
Confidence 33455555553 45899999999753 234444332211 2346678889987754433221 24899
Q ss_pred cCCCCHHHHHHHHHHhh---cCCCCCChhHHHHHHHHHHHhc---CCCchH-HHHhhhhc-----C---CCHHHHHHHHH
Q 004993 90 VKELADADALKLFSRCA---FRQDHPVACYMELTYKIIKYAQ---GVPLAL-KVLGLFLS-----A---RRKEEWESAIT 154 (720)
Q Consensus 90 l~~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~i~~~c~---GlPLal-~~lg~~L~-----~---~~~~~W~~~l~ 154 (720)
+++++.++..+++...+ +...... .+....++++++ |.|..+ ..+..+.. + .+.+.++.+++
T Consensus 194 l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 194 FPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp ECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 99999999999998764 3222222 344566777777 999844 33332221 1 36677777776
Q ss_pred HHhcCCCchHHHHHHHhhcCCChhhhhhhcccccccC-C---CCHHHH----HHHHHhCCCCc------ccchhhhhccc
Q 004993 155 KLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACYFV-G---ANKDFV----INYFDASDFFP------EIGLGRLVDKS 220 (720)
Q Consensus 155 ~L~~~~~~~i~~~l~~syd~L~~~~k~~fl~~a~f~~-~---~~~~~l----~~~w~~~g~~~------~~~~~~L~~~~ 220 (720)
... ...+.-.+..++...+..+..++...+ + +....+ ..+-...|..+ ...++.|.+.+
T Consensus 271 ~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~g 343 (386)
T 2qby_A 271 EIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVG 343 (386)
T ss_dssp HHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Confidence 653 245667788999999998888886543 2 222222 22222233222 23377788888
Q ss_pred ceEEe
Q 004993 221 LITIS 225 (720)
Q Consensus 221 li~~~ 225 (720)
+|...
T Consensus 344 li~~~ 348 (386)
T 2qby_A 344 ILTAK 348 (386)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88753
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.02 E-value=0.012 Score=62.33 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=81.8
Q ss_pred CccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCC--CcCCcccceeecccccccccccccccCCcccceeecc
Q 004993 347 TLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 424 (720)
Q Consensus 347 ~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 424 (720)
.+..+.+..+........+....+|+.+.+..+ ...++. +..+.+|+.+.+..+ ....-...+.++.+|+.+.+.
T Consensus 195 ~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 195 TGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp CCSEEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccccccccceeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence 344444433322222334556667777776554 222222 666777777777653 222233456667777777775
Q ss_pred ccccccccc-cccCCCCCCcEEeccCCCCCCccchhccCCCCCCEEcccCCcCcCcCCCCCCCccEEeccCCCccccccC
Q 004993 425 LCKNLNRLP-SSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSS 503 (720)
Q Consensus 425 ~n~~~~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~~~~L~~L~l 503 (720)
.+ ...++ ..+..+++|+.+.+.++.....-...+.++++|+.+.|..+ ++.++.. .+.+|++|+.+.+
T Consensus 272 ~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-------aF~~C~~L~~i~i 340 (379)
T 4h09_A 272 AK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVY-------AFKNCKALSTISY 340 (379)
T ss_dssp CC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCCCCC
T ss_pred cc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHH-------HhhCCCCCCEEEE
Confidence 32 23333 34566778888877765433323455677778887777542 3444431 5677888887777
Q ss_pred ccc
Q 004993 504 FSF 506 (720)
Q Consensus 504 ~~N 506 (720)
..+
T Consensus 341 p~~ 343 (379)
T 4h09_A 341 PKS 343 (379)
T ss_dssp CTT
T ss_pred CCc
Confidence 543
No 172
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.00 E-value=0.075 Score=56.15 Aligned_cols=190 Identities=12% Similarity=0.022 Sum_probs=111.0
Q ss_pred cchHHHHHhcC--CCeEEEEEecCCCh--HHHHHHHccCCCCC----CCcEEEEEeCChhHHhhcC-------CCcEEEc
Q 004993 26 IGLNFESKRLT--RKKVLIVFDDVTDR--KQIEFLIGELDSFA----SGSLIIITTRDKQVLINCW-------ADKIYEV 90 (720)
Q Consensus 26 ~~~~~i~~~L~--~kr~LlVLDDv~~~--~~~~~l~~~~~~~~----~gSrIivTTR~~~v~~~~~-------~~~~~~l 90 (720)
.....+.+.+. +++.+|||||++.. ..++.+........ .+-.||+||++..+..... ....+.+
T Consensus 111 ~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~ 190 (389)
T 1fnn_A 111 EFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRF 190 (389)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEe
Confidence 33444555443 66889999999763 44666655443322 4778899998876544332 1237999
Q ss_pred CCCCHHHHHHHHHHhhc---CCCCCChhHHHHHHHHHHHh---------cCCCchHHHHh-hhhc-----C---CCHHHH
Q 004993 91 KELADADALKLFSRCAF---RQDHPVACYMELTYKIIKYA---------QGVPLALKVLG-LFLS-----A---RRKEEW 149 (720)
Q Consensus 91 ~~L~~~es~~LF~~~af---~~~~~~~~~~~l~~~i~~~c---------~GlPLal~~lg-~~L~-----~---~~~~~W 149 (720)
++++.++..+++...+- ...... .+....+++++ +|.|..+..+. .+.. + .+.+..
T Consensus 191 ~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v 267 (389)
T 1fnn_A 191 SPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDV 267 (389)
T ss_dssp CCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 99999999999987643 222222 34567788888 78875544332 2221 2 244444
Q ss_pred HHHHHHHhcCCCchHHHHHHHhhcCCChhhhhhhccccccc---CC--CCHHHHHHHH----HhCCCCc------ccchh
Q 004993 150 ESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACYF---VG--ANKDFVINYF----DASDFFP------EIGLG 214 (720)
Q Consensus 150 ~~~l~~L~~~~~~~i~~~l~~syd~L~~~~k~~fl~~a~f~---~~--~~~~~l~~~w----~~~g~~~------~~~~~ 214 (720)
..++....... +.-.+..|+.+++.++..++.+. .+ .....+.+.+ ...|..+ ...+.
T Consensus 268 ~~~~~~~~~~~-------~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 340 (389)
T 1fnn_A 268 RKSSKEVLFGI-------SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLN 340 (389)
T ss_dssp HHHHHHHSCCC-------CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHHHHHhhhh-------HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 45544443221 12234567888888887777654 22 3333333322 2233322 13378
Q ss_pred hhhcccceEEe
Q 004993 215 RLVDKSLITIS 225 (720)
Q Consensus 215 ~L~~~~li~~~ 225 (720)
.|.++++|...
T Consensus 341 ~L~~~gli~~~ 351 (389)
T 1fnn_A 341 DLREKGIVETR 351 (389)
T ss_dssp HHHHTTSSEEE
T ss_pred HHHhCCCeEEe
Confidence 89999999874
No 173
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.92 E-value=0.013 Score=56.50 Aligned_cols=99 Identities=8% Similarity=0.024 Sum_probs=67.3
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChhHH-hhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQVL-INC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++.+||+||++.. ..++.+...+.....+.+||+||+..... ... .....+++++++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 67899999999764 44555555444456788999999876421 111 122388999999999999998876532221
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
.+ .+....+++.++|.|..+..+
T Consensus 181 ~~--~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 181 IT--EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp BC--HHHHHHHHHHHTTCHHHHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHHHHH
Confidence 11 245567889999999976544
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.016 Score=59.66 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=67.0
Q ss_pred CCCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCChhH-Hhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCC
Q 004993 36 TRKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRDKQV-LINC-WADKIYEVKELADADALKLFSRCAFRQDH 111 (720)
Q Consensus 36 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~v-~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~ 111 (720)
.+++.+||+||++. ...++.+...+.....+.++|+||+...- .... .....+++++++.++..+++...+.....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 45689999999976 34455555444444577889998877532 1111 22348999999999999999887643221
Q ss_pred CChhHHHHHHHHHHHhcCCCch-HHHHh
Q 004993 112 PVACYMELTYKIIKYAQGVPLA-LKVLG 138 (720)
Q Consensus 112 ~~~~~~~l~~~i~~~c~GlPLa-l~~lg 138 (720)
..+ .+....++++|+|.|.. +..+.
T Consensus 185 ~~~--~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 185 KYT--NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CBC--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCC--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 111 34567889999999954 44443
No 175
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.13 E-value=0.03 Score=49.38 Aligned_cols=52 Identities=19% Similarity=0.159 Sum_probs=29.8
Q ss_pred EEEecCCCCC--CCCCCCCCCCccEEEccCCCcccccCC-CCCCCCccEEecCCCc
Q 004993 328 YLYWDGYPSK--SLPPVIRLDTLISLQLRESKVEQLWDG-VPNLVNLKEIDLSYSR 380 (720)
Q Consensus 328 ~L~l~~~~~~--~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~L~~L~~L~Ls~n~ 380 (720)
.++.+++.++ .+|..+ ..+|+.|+|++|+|+.+|.+ +..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555555 666442 23466666666666666533 4556666666666664
No 176
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.78 E-value=0.04 Score=48.59 Aligned_cols=54 Identities=19% Similarity=0.129 Sum_probs=37.1
Q ss_pred cEEEccCCCcc--cccCCCCCCCCccEEecCCCcCCCCCCC-CcCCcccceeecccccc
Q 004993 349 ISLQLRESKVE--QLWDGVPNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSS 404 (720)
Q Consensus 349 ~~L~L~~n~i~--~l~~~~~~L~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~ 404 (720)
..++.++++++ .+|..+. ++|++|+|++|++....+. |..+++|+.|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36778888887 7876543 4678888888875554444 66677777777776643
No 177
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.82 E-value=0.44 Score=48.73 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=85.0
Q ss_pred HHHHhcCC---CeEEEEEecCCChH--HHHHHHccCCCC------------------CCCcEEEEEeCChhHHh-hc--C
Q 004993 30 FESKRLTR---KKVLIVFDDVTDRK--QIEFLIGELDSF------------------ASGSLIIITTRDKQVLI-NC--W 83 (720)
Q Consensus 30 ~i~~~L~~---kr~LlVLDDv~~~~--~~~~l~~~~~~~------------------~~gSrIivTTR~~~v~~-~~--~ 83 (720)
.+...+.+ ++.+|+|||++... ..+.+...+... .++.++|.||....... .. .
T Consensus 79 ~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R 158 (324)
T 1hqc_A 79 DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSR 158 (324)
T ss_dssp HHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTT
T ss_pred HHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhc
Confidence 34444443 66799999997642 333333221111 12456777776543211 11 1
Q ss_pred CCcEEEcCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcC---------CCHHHHHHHHH
Q 004993 84 ADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSA---------RRKEEWESAIT 154 (720)
Q Consensus 84 ~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~---------~~~~~W~~~l~ 154 (720)
.+.++.++.++.+|..+++...+........ .+....++++++|.|-.+..+...+.. .+.+....++.
T Consensus 159 ~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 236 (324)
T 1hqc_A 159 FGIVEHLEYYTPEELAQGVMRDARLLGVRIT--EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA 236 (324)
T ss_dssp CSCEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHH
T ss_pred ccEEEecCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 2358999999999999998887654322221 345678899999999887665443321 23444444444
Q ss_pred HHhcCCCchHHHHHHHhhcCCChhhhhhhcccccccC
Q 004993 155 KLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACYFV 191 (720)
Q Consensus 155 ~L~~~~~~~i~~~l~~syd~L~~~~k~~fl~~a~f~~ 191 (720)
.+ ...+..++..++..+..++....
T Consensus 237 ~~------------~~~~~~l~~~e~~~i~~~~~~~~ 261 (324)
T 1hqc_A 237 AL------------GLDELGLEKRDREILEVLILRFG 261 (324)
T ss_dssp HH------------TCCTTCCCHHHHHHHHHHHHHSC
T ss_pred Hh------------cccccCCCHHHHHHHHHHHHHhc
Confidence 33 22345667777777766554443
No 178
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.39 E-value=0.019 Score=54.41 Aligned_cols=83 Identities=13% Similarity=0.010 Sum_probs=42.1
Q ss_pred cccceeeccccccccc----ccccccCCcccceeeccccccccc----cccccCCCCCCcEEeccCCCC--CC-----cc
Q 004993 392 RNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNLNR----LPSSLCELISLQRLYLSGCSN--LR-----RI 456 (720)
Q Consensus 392 ~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~~--~~-----~l 456 (720)
+.|+.|+|++|.+... +...+..-+.|+.|+|++|.+... +-..+..-+.|+.|+|++|.. .+ .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 3444445544443322 222333445566666666654321 223344455677777765421 22 23
Q ss_pred chhccCCCCCCEEcccCC
Q 004993 457 PESIINLSKLELLHLKNC 474 (720)
Q Consensus 457 p~~l~~l~~L~~L~L~~~ 474 (720)
...+..-+.|+.|+++.|
T Consensus 150 a~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHCSSCCEEECCCC
T ss_pred HHHHHhCCCcCeEeccCC
Confidence 344555567777777665
No 179
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.32 E-value=0.15 Score=52.35 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=67.8
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChhH-Hhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQV-LINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~v-~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++.+||+||++.. +.++.+...+.....+.++|+||+...- .... .....+.+++++.++..+++...+......
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 67889999999753 5566666555555678899999876532 1111 112378999999999999998776543221
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHHh
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVLG 138 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~lg 138 (720)
.+ .+....+++.++|.|..+..+.
T Consensus 189 ~~--~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 189 LT--EEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EC--HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CC--HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 3455778899999998765443
No 180
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.90 E-value=0.044 Score=51.93 Aligned_cols=109 Identities=10% Similarity=-0.009 Sum_probs=63.4
Q ss_pred cccceeecccc-cccc----cccccccCCcccceeeccccccccc----cccccCCCCCCcEEeccCCCCCC----ccch
Q 004993 392 RNLENLLLKAC-SSLV----ETHSSIQYLSKLVTLDMRLCKNLNR----LPSSLCELISLQRLYLSGCSNLR----RIPE 458 (720)
Q Consensus 392 ~~L~~L~L~~~-~~~~----~~p~~l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~~~~----~lp~ 458 (720)
+.|+.|+|++| .+.. .+...+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.+.. .+-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 34555555543 2221 2334555667888889988875432 23334445788899998887543 2344
Q ss_pred hccCCCCCCEEcccCCcC--cCc-----CCCCCCCccEEeccCCCccccccCccccc
Q 004993 459 SIINLSKLELLHLKNCSK--LLS-----LPELPCNLFSVGVRRCTSLEALSSFSFLF 508 (720)
Q Consensus 459 ~l~~l~~L~~L~L~~~~~--l~~-----lp~lp~~L~~L~~~~~~~L~~L~l~~N~l 508 (720)
.+..-+.|++|+|++|.. ++. +.+ .+...+.|+.|+++.|.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~--------aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMM--------AIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHH--------HHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHH--------HHHhCCCcCeEeccCCCc
Confidence 566667788898886532 221 111 234456777777766554
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.60 E-value=0.69 Score=48.30 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=65.8
Q ss_pred CCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++.+||+||++. ...++.+...+.....+.++|++|.+.. +.... .....+++++++.++..+++...+-.....
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 5678999999974 4456666655544456778888876543 21111 223689999999999999988765322111
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHHh
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVLG 138 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~lg 138 (720)
.+ .+....++++++|.|..+..+.
T Consensus 198 ~~--~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 HE--PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp BC--HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CC--HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 3445678899999999876553
No 182
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.35 E-value=2.1 Score=43.21 Aligned_cols=98 Identities=8% Similarity=0.051 Sum_probs=66.8
Q ss_pred CCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++.+||+||++. ....+.+...+.....+.++|+||.... +.... .....+++++++.++..+++...+-+....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 6688999999975 3456777776766667888888887654 21111 123489999999999999988776443221
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALKV 136 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~ 136 (720)
.+ .+....+++.++|.+..+..
T Consensus 181 i~--~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 181 IT--EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp BC--HHHHHHHHHTTTTCHHHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHHHH
Confidence 11 23456677888998876543
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.26 E-value=2.1 Score=42.46 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=67.0
Q ss_pred HhcCCCeEEEEEecCCCh------------HHHHHHHccCCC---CCCCcEEEEEeCChhHHhhc---C-CCcEEEcCCC
Q 004993 33 KRLTRKKVLIVFDDVTDR------------KQIEFLIGELDS---FASGSLIIITTRDKQVLINC---W-ADKIYEVKEL 93 (720)
Q Consensus 33 ~~L~~kr~LlVLDDv~~~------------~~~~~l~~~~~~---~~~gSrIivTTR~~~v~~~~---~-~~~~~~l~~L 93 (720)
...+.+..+|+|||++.. ..++.+...... .+...+||.||......... + -...+.++++
T Consensus 119 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l 198 (272)
T 1d2n_A 119 DAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI 198 (272)
T ss_dssp HHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCE
T ss_pred HHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCc
Confidence 334567899999998643 223444333322 33455678888887665542 1 1467899999
Q ss_pred CH-HHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcC------CCchHHHHhhhhcCCCHHHHHHHHHHHhc
Q 004993 94 AD-ADALKLFSRCAFRQDHPVACYMELTYKIIKYAQG------VPLALKVLGLFLSARRKEEWESAITKLET 158 (720)
Q Consensus 94 ~~-~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~G------lPLal~~lg~~L~~~~~~~W~~~l~~L~~ 158 (720)
+. ++..++..... ... .+....+++.+.| ++-++.++-.+........|+.+++.+..
T Consensus 199 ~~r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 199 ATGEQLLEALELLG----NFK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp EEHHHHHHHHHHHT----CSC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcC----CCC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 98 56666655421 111 2335667777877 33333344333333344566666666543
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.68 E-value=0.4 Score=46.36 Aligned_cols=99 Identities=13% Similarity=0.138 Sum_probs=57.1
Q ss_pred CCeEEEEEecCCChH--H--HHHHHccCCCC-CCC-cEEEEEeCCh---------hHHhhcCCCcEEEcCCCCHHHHHHH
Q 004993 37 RKKVLIVFDDVTDRK--Q--IEFLIGELDSF-ASG-SLIIITTRDK---------QVLINCWADKIYEVKELADADALKL 101 (720)
Q Consensus 37 ~kr~LlVLDDv~~~~--~--~~~l~~~~~~~-~~g-SrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~es~~L 101 (720)
.++.+||+||++... . .+.+...+... ..| .+||+||+.. .+...+....++++++++.++..++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~ 182 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAA 182 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHH
Confidence 346789999996531 1 22222211110 122 2588887632 2222222236899999999999999
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHH
Q 004993 102 FSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 102 F~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
+...+-....... .+....++++++|.+-.+..+
T Consensus 183 l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 183 LQRRAAMRGLQLP--EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHTTCCCC--HHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHcCCCCC--HHHHHHHHHHccCCHHHHHHH
Confidence 9887643221111 345567888888887665433
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=81.40 E-value=4.2 Score=41.70 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=65.0
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+++-++|+|+++.. +..+.|...+.....+..+|++|.+.+ +.... +....+.+++++.++..+.....+ ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~ 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC
Confidence 46778899999853 445666655555556778887777653 33332 234689999999999999888765 11
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHHh
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVLG 138 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~lg 138 (720)
. .+....++..++|.|..+..+.
T Consensus 183 ~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 183 S---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp C---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2344678899999998765443
No 186
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.09 E-value=4.2 Score=44.61 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=57.3
Q ss_pred CCeEEEEEecCCCh-----HHHHHHHccCCCCCCCcEEEEEeCChh---HHhhcCCCcEEEcCCCCHHHHHHHHHHhhcC
Q 004993 37 RKKVLIVFDDVTDR-----KQIEFLIGELDSFASGSLIIITTRDKQ---VLINCWADKIYEVKELADADALKLFSRCAFR 108 (720)
Q Consensus 37 ~kr~LlVLDDv~~~-----~~~~~l~~~~~~~~~gSrIivTTR~~~---v~~~~~~~~~~~l~~L~~~es~~LF~~~af~ 108 (720)
+++.+||+|+|+.. ..+..+...... .+.+||++|.+.. +..-......+.++.++.++..+.+...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 57889999999643 113333322211 2345777766543 2221123458999999999999998877654
Q ss_pred CC-CCChhHHHHHHHHHHHhcC-CCchHHHHh
Q 004993 109 QD-HPVACYMELTYKIIKYAQG-VPLALKVLG 138 (720)
Q Consensus 109 ~~-~~~~~~~~l~~~i~~~c~G-lPLal~~lg 138 (720)
.. ...+ +....|+++++| ++-|+..+.
T Consensus 225 ~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 225 EKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 22 1222 234677888998 444555543
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.70 E-value=3.6 Score=42.36 Aligned_cols=98 Identities=6% Similarity=0.107 Sum_probs=59.8
Q ss_pred CeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 004993 38 KKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELADADALKLFSRCAFRQDHPV 113 (720)
Q Consensus 38 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~~ 113 (720)
++-++|||++... ...+.+...+.....+.+||+||.+.. +.... .....+++++++.++..+.+...+-......
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 5568999999763 223333333322345678888887642 22221 1236899999999999999887764321110
Q ss_pred hhHHHHHHHHHHHhcCCCchHHH
Q 004993 114 ACYMELTYKIIKYAQGVPLALKV 136 (720)
Q Consensus 114 ~~~~~l~~~i~~~c~GlPLal~~ 136 (720)
+ -.+....+++.++|.+-.+..
T Consensus 214 ~-~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 214 E-TKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp C-CSHHHHHHHHHHTTCHHHHHH
T ss_pred C-cHHHHHHHHHHcCCCHHHHHH
Confidence 0 023456788889998876543
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=77.66 E-value=2.6 Score=45.22 Aligned_cols=124 Identities=10% Similarity=0.033 Sum_probs=70.6
Q ss_pred HHHhcCCCeEEEEEecCCChH----HHHHHHccCCC-CCCCcEEEEEeCC---------hhHHhhcCCCcEEEcCCCCHH
Q 004993 31 ESKRLTRKKVLIVFDDVTDRK----QIEFLIGELDS-FASGSLIIITTRD---------KQVLINCWADKIYEVKELADA 96 (720)
Q Consensus 31 i~~~L~~kr~LlVLDDv~~~~----~~~~l~~~~~~-~~~gSrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~ 96 (720)
+.+.++.+.-+|+|||++... .-+.+...+.. ...|..||+||.. ..+...+....++.+++++.+
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHH
T ss_pred HHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHH
Confidence 344444467799999996432 22222222111 1357789999986 233443433467899999999
Q ss_pred HHHHHHHHhhcCCC-CCChhHHHHHHHHHHHhcCCCchHHHHhh------hhcC--CCHHHHHHHHHHHh
Q 004993 97 DALKLFSRCAFRQD-HPVACYMELTYKIIKYAQGVPLALKVLGL------FLSA--RRKEEWESAITKLE 157 (720)
Q Consensus 97 es~~LF~~~af~~~-~~~~~~~~l~~~i~~~c~GlPLal~~lg~------~L~~--~~~~~W~~~l~~L~ 157 (720)
+-.+++.+++-... ..++ +....+++++.|.+-.+..+-. .+.+ .+.+.++.++..+.
T Consensus 267 ~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999988764211 1122 2345667788887765432211 1122 35566666665543
No 189
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=71.43 E-value=7.6 Score=38.45 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=53.3
Q ss_pred CCCeEEEEEecCCCh----------------HHHHHHHccCC--CCCCCcEEEEEeCChhHHh-----hcCCCcEEEcCC
Q 004993 36 TRKKVLIVFDDVTDR----------------KQIEFLIGELD--SFASGSLIIITTRDKQVLI-----NCWADKIYEVKE 92 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~----------------~~~~~l~~~~~--~~~~gSrIivTTR~~~v~~-----~~~~~~~~~l~~ 92 (720)
..+..+|+|||++.. ..+..+..... ....+.+||.||...+... ....+..+.++.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 187 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCC
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECC
Confidence 345689999999653 12333332222 1234677888887553322 112245899999
Q ss_pred CCHHHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHhcC
Q 004993 93 LADADALKLFSRCAFRQDHP-VACYMELTYKIIKYAQG 129 (720)
Q Consensus 93 L~~~es~~LF~~~af~~~~~-~~~~~~l~~~i~~~c~G 129 (720)
++.++-.+++..++...... ..++ ..++..+.|
T Consensus 188 p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g 221 (285)
T 3h4m_A 188 PDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEG 221 (285)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTT
T ss_pred CCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCC
Confidence 99999999998876543221 2233 344555555
No 190
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.17 E-value=13 Score=37.82 Aligned_cols=99 Identities=9% Similarity=0.084 Sum_probs=61.8
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
.++-+|++|+++.. ...+.+...+.......++|++|.... +.... .....+.+++++.++..+.+...+-.....
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 211 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK 211 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 35568999998643 334444443333345678888875443 21111 112478999999999999888776433221
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHH
Q 004993 113 VACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
.+ .+....++++++|.|-.+..+
T Consensus 212 i~--~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 212 CD--DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CC--HHHHHHHHHHTSSCHHHHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHHHHH
Confidence 11 345678899999998875544
No 191
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=63.25 E-value=17 Score=37.09 Aligned_cols=100 Identities=11% Similarity=-0.010 Sum_probs=65.0
Q ss_pred cCCCeEEEEEecCCC---hHHHHHHHccCCCCCCCcEEEEEeCC-------hhHHhhcC-CCcEEEcCCCCHHHHHHHHH
Q 004993 35 LTRKKVLIVFDDVTD---RKQIEFLIGELDSFASGSLIIITTRD-------KQVLINCW-ADKIYEVKELADADALKLFS 103 (720)
Q Consensus 35 L~~kr~LlVLDDv~~---~~~~~~l~~~~~~~~~gSrIivTTR~-------~~v~~~~~-~~~~~~l~~L~~~es~~LF~ 103 (720)
+-+++=++|+|++.. .+.++.|...+....++..+|++|.+ +.+.+... ...+++.++++.++..+...
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 356677888899854 46677777666555678888877743 34555533 35689999999988887776
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHhcCCCchHHH
Q 004993 104 RCAFRQDHPVACYMELTYKIIKYAQGVPLALKV 136 (720)
Q Consensus 104 ~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~ 136 (720)
+.+-...... -.+....+++.++|.+.++..
T Consensus 153 ~~~~~~g~~i--~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNLEL--DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTCEE--CHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCCCC--CHHHHHHHHHHhchHHHHHHH
Confidence 6553222111 134456677888887776543
No 192
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=62.53 E-value=21 Score=34.41 Aligned_cols=96 Identities=10% Similarity=0.159 Sum_probs=54.3
Q ss_pred CCCeEEEEEecCCCh-----------------HHHHHHHccCCC--CCCCcEEEEEeCChhHHhh-c----CCCcEEEcC
Q 004993 36 TRKKVLIVFDDVTDR-----------------KQIEFLIGELDS--FASGSLIIITTRDKQVLIN-C----WADKIYEVK 91 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~-----------------~~~~~l~~~~~~--~~~gSrIivTTR~~~v~~~-~----~~~~~~~l~ 91 (720)
..+..+|+|||++.. ..+..+...+.. ...+-.||.||........ . ..+..+.++
T Consensus 96 ~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp HTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
Confidence 345789999999864 112333322222 1346677777766543221 1 234688899
Q ss_pred CCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCc
Q 004993 92 ELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPL 132 (720)
Q Consensus 92 ~L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPL 132 (720)
.++.++-.+++..++-..... .........+++.+.|.+-
T Consensus 176 ~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 176 LPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp SCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCH
T ss_pred CcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCH
Confidence 999999999998776432211 1112233567777777654
No 193
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=57.28 E-value=27 Score=35.15 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=55.2
Q ss_pred CeEEEEEecCCChH---HHHHHHccCCCCCCCcEEEEEeCChh-----HHhhcCCCcEEEcCCCCHHHHHHHHH------
Q 004993 38 KKVLIVFDDVTDRK---QIEFLIGELDSFASGSLIIITTRDKQ-----VLINCWADKIYEVKELADADALKLFS------ 103 (720)
Q Consensus 38 kr~LlVLDDv~~~~---~~~~l~~~~~~~~~gSrIivTTR~~~-----v~~~~~~~~~~~l~~L~~~es~~LF~------ 103 (720)
++-+||+||++... +.+.+...+.....+.+||+||.... +... ..+++++.++.+|-.+++.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~l 181 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRVITFGQPTDEDKIEMMKQMIRRL 181 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 78899999998754 44554443333345678888887654 2222 2479999999888543322
Q ss_pred -HhhcCCCCCChhHHHHHHHHHHHhcCCCchHH
Q 004993 104 -RCAFRQDHPVACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 104 -~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~ 135 (720)
..+-......++ .+....++++++|.+-.+.
T Consensus 182 ~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 182 TEICKHEGIAIAD-MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHHTCCBSC-HHHHHHHHHHTCSCTTHHH
T ss_pred HHHHHHcCCCCCc-HHHHHHHHHhCCCCHHHHH
Confidence 222111111111 2455678888888776543
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=55.28 E-value=14 Score=37.35 Aligned_cols=90 Identities=10% Similarity=0.090 Sum_probs=52.4
Q ss_pred eEEEEEecCCChH----HHHHHHccCCC-CCCCcEEEEEeCCh---------hHHhhcCCCcEEEcCCCCHHHHHHHHHH
Q 004993 39 KVLIVFDDVTDRK----QIEFLIGELDS-FASGSLIIITTRDK---------QVLINCWADKIYEVKELADADALKLFSR 104 (720)
Q Consensus 39 r~LlVLDDv~~~~----~~~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~es~~LF~~ 104 (720)
.-+|+|||+.... ..+.+...+.. ...|.+||+||... .+...+....++++++ +.++-.+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 6799999996532 12222222111 13466788888632 2333333346799999 99999999988
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCc
Q 004993 105 CAFRQDHPVACYMELTYKIIKYAQGVPL 132 (720)
Q Consensus 105 ~af~~~~~~~~~~~l~~~i~~~c~GlPL 132 (720)
.+.......+ .+....+++++ |..-
T Consensus 178 ~~~~~~~~l~--~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNLELR--KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTCCCC--HHHHHHHHHHC-SSHH
T ss_pred HHHhcCCCCC--HHHHHHHHHhC-CCHH
Confidence 7753222111 23445667777 6543
No 195
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=54.01 E-value=26 Score=34.84 Aligned_cols=68 Identities=10% Similarity=0.189 Sum_probs=46.9
Q ss_pred eEEEEEecCC-----------ChHHHHHHHccCCCCCCCcEEEEEeCChh----------HHhhcCCCcEEEcCCCCHHH
Q 004993 39 KVLIVFDDVT-----------DRKQIEFLIGELDSFASGSLIIITTRDKQ----------VLINCWADKIYEVKELADAD 97 (720)
Q Consensus 39 r~LlVLDDv~-----------~~~~~~~l~~~~~~~~~gSrIivTTR~~~----------v~~~~~~~~~~~l~~L~~~e 97 (720)
.-+|+||+++ +....+.|...+.....+.+||.||.... +... .+..+.++.++.++
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~ 208 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEE 208 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHH
Confidence 4599999998 44445555554444456778888886543 2222 23689999999999
Q ss_pred HHHHHHHhhcC
Q 004993 98 ALKLFSRCAFR 108 (720)
Q Consensus 98 s~~LF~~~af~ 108 (720)
-.+++...+-.
T Consensus 209 ~~~il~~~l~~ 219 (309)
T 3syl_A 209 LFEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877643
No 196
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=53.95 E-value=28 Score=35.23 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHHhc---CCCeEEEEEecCCChHHHHHHHccCCCC-CCCcE--EEEEeCChhH
Q 004993 5 LRQELLSTLLNDDGNVKIIPNIGLNFESKRL---TRKKVLIVFDDVTDRKQIEFLIGELDSF-ASGSL--IIITTRDKQV 78 (720)
Q Consensus 5 lq~~ll~~l~~~~~~~~~~~~~~~~~i~~~L---~~kr~LlVLDDv~~~~~~~~l~~~~~~~-~~gSr--IivTTR~~~v 78 (720)
+-.+|..++.+..... .........+.+.+ ++++++||||+++...+-+.|..-+.|. ..+|+ ||.++.+.+.
T Consensus 97 ~~~~I~~~L~g~~~~~-~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 97 LYEKIWFAISKENLCG-DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHSCCC--C-CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHhcCCCCCc-hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 4456777776653221 11112223333333 4678999999998653211221111111 12333 3344544322
Q ss_pred ---------HhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 004993 79 ---------LINCWADKIYEVKELADADALKLFSRCA 106 (720)
Q Consensus 79 ---------~~~~~~~~~~~l~~L~~~es~~LF~~~a 106 (720)
...++ ...+..++++.+|-.++..+++
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11221 2478999999999999888765
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=52.78 E-value=53 Score=33.62 Aligned_cols=100 Identities=12% Similarity=0.068 Sum_probs=54.9
Q ss_pred CCeEEEEEecCCCh-------------HHHHH----HHccCCCCCCCcEEEEEeCChhHHh-hc--CCCcEEEcCCCCHH
Q 004993 37 RKKVLIVFDDVTDR-------------KQIEF----LIGELDSFASGSLIIITTRDKQVLI-NC--WADKIYEVKELADA 96 (720)
Q Consensus 37 ~kr~LlVLDDv~~~-------------~~~~~----l~~~~~~~~~gSrIivTTR~~~v~~-~~--~~~~~~~l~~L~~~ 96 (720)
.++.+|+||+++.. ..... +.+.......+-+||.||....... .. ..+..+.++..+.+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~ 254 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEAS 254 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHH
Confidence 56789999999532 11222 2222222234556666776543211 11 23457889999999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC-CchHHHHh
Q 004993 97 DALKLFSRCAFRQDHPVACYMELTYKIIKYAQGV-PLALKVLG 138 (720)
Q Consensus 97 es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~Gl-PLal~~lg 138 (720)
+-.+++...+-....... .+....+++.+.|. +-++..+.
T Consensus 255 ~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 255 ARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 999988776643221111 23456677888884 44454443
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=52.25 E-value=95 Score=31.65 Aligned_cols=91 Identities=13% Similarity=0.023 Sum_probs=52.4
Q ss_pred CCCeEEEEEecCCChH-------------HHHHHHc---cCCCCCCCcEEEEEeCChh-----HHhhcCCCcEEEcCCCC
Q 004993 36 TRKKVLIVFDDVTDRK-------------QIEFLIG---ELDSFASGSLIIITTRDKQ-----VLINCWADKIYEVKELA 94 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~~-------------~~~~l~~---~~~~~~~gSrIivTTR~~~-----v~~~~~~~~~~~l~~L~ 94 (720)
..+..+|+||+++... ..+.+.. .......+-.||.||.... +.. ..+..+.++..+
T Consensus 141 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~ 218 (355)
T 2qp9_X 141 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPD 218 (355)
T ss_dssp HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCC
T ss_pred HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcC
Confidence 3577899999997431 1222222 1222234666776776442 333 345678899999
Q ss_pred HHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC
Q 004993 95 DADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGV 130 (720)
Q Consensus 95 ~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~Gl 130 (720)
.++-.+++..++-+...... ......+++++.|.
T Consensus 219 ~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 219 LAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGY 252 (355)
T ss_dssp HHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCC
Confidence 99999999877644321111 12235567777774
No 199
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=49.30 E-value=9.5 Score=35.67 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=39.5
Q ss_pred cchHHHHHhcCCCeE-EEEEecCCCh-----HHHHHHHccCCCCCCCcEEEEEeCChhHHhhcCCCcEEEcCCCC
Q 004993 26 IGLNFESKRLTRKKV-LIVFDDVTDR-----KQIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVKELA 94 (720)
Q Consensus 26 ~~~~~i~~~L~~kr~-LlVLDDv~~~-----~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~~L~ 94 (720)
.....+++.+.+.+| |||||++... ...+.+...+..-...--||+|+|...-.-.-.+|.+-+|+...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 345667777777666 9999998432 11222222222223556799999986432222356677776543
No 200
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=49.06 E-value=81 Score=31.58 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=53.7
Q ss_pred CCCeEEEEEecCCChH-------------HHHHHH---ccCCCCCCCcEEEEEeCChhHHhh---cCCCcEEEcCCCCHH
Q 004993 36 TRKKVLIVFDDVTDRK-------------QIEFLI---GELDSFASGSLIIITTRDKQVLIN---CWADKIYEVKELADA 96 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~~-------------~~~~l~---~~~~~~~~gSrIivTTR~~~v~~~---~~~~~~~~l~~L~~~ 96 (720)
..+..+|+||+++... ....+. ........+..||.||.....+.. -..+..+.++..+.+
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~ 187 (322)
T 3eie_A 108 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 187 (322)
T ss_dssp HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHH
T ss_pred hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHH
Confidence 3466899999997431 122222 222223456677778876433211 023567889999999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC
Q 004993 97 DALKLFSRCAFRQDHPVACYMELTYKIIKYAQGV 130 (720)
Q Consensus 97 es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~Gl 130 (720)
+-.+++..++-+...... ......+++++.|.
T Consensus 188 ~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~ 219 (322)
T 3eie_A 188 ARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGY 219 (322)
T ss_dssp HHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCC
Confidence 999999887754322211 12234566677663
No 201
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=45.84 E-value=1.5e+02 Score=29.54 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=55.2
Q ss_pred CCCeEEEEEecCCCh-------------HHHHHHHccC---CCCCCCcEEEEEeCChh-----HHhhcCCCcEEEcCCCC
Q 004993 36 TRKKVLIVFDDVTDR-------------KQIEFLIGEL---DSFASGSLIIITTRDKQ-----VLINCWADKIYEVKELA 94 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~-------------~~~~~l~~~~---~~~~~gSrIivTTR~~~-----v~~~~~~~~~~~l~~L~ 94 (720)
..+..+|++|+++.. .....+...+ .....+-.||.||.... +.. ..+..+.++..+
T Consensus 103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~ 180 (322)
T 1xwi_A 103 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPE 180 (322)
T ss_dssp HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCC
T ss_pred hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcC
Confidence 356789999999754 0112222222 11234556666775432 222 345688999999
Q ss_pred HHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCc-hHHHH
Q 004993 95 DADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPL-ALKVL 137 (720)
Q Consensus 95 ~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPL-al~~l 137 (720)
.++-.+++..+.-+...... ......+++++.|..- .|..+
T Consensus 181 ~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 181 PHARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp HHHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999876643221111 1233556777777633 34443
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=43.79 E-value=1.3e+02 Score=31.09 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=54.1
Q ss_pred CCeEEEEEecCCCh-------------HH----HHHHHccCCCCCCCcEEEEEeCChhHHhh-c--CCCcEEEcCCCCHH
Q 004993 37 RKKVLIVFDDVTDR-------------KQ----IEFLIGELDSFASGSLIIITTRDKQVLIN-C--WADKIYEVKELADA 96 (720)
Q Consensus 37 ~kr~LlVLDDv~~~-------------~~----~~~l~~~~~~~~~gSrIivTTR~~~v~~~-~--~~~~~~~l~~L~~~ 96 (720)
.+..+|+||+++.. .. +..+.+........-+||.||.....+.. . .....+.++..+.+
T Consensus 206 ~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~ 285 (389)
T 3vfd_A 206 LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEE 285 (389)
T ss_dssp SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHH
Confidence 45579999999643 11 12222222212334566667765332211 0 23457889999999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCc-hHHHH
Q 004993 97 DALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPL-ALKVL 137 (720)
Q Consensus 97 es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPL-al~~l 137 (720)
+-.+++...+-....... .+....+++.+.|..- ++..+
T Consensus 286 ~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 286 TRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp HHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 999999877644322221 2344677888888554 44444
No 203
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=43.01 E-value=62 Score=32.93 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=55.2
Q ss_pred EEEEEecCCCh--HHHHHHHccCCCCCCCcEEEEEeCC-----------------hhHHhhcCCCcEEEcCCCCHHHHHH
Q 004993 40 VLIVFDDVTDR--KQIEFLIGELDSFASGSLIIITTRD-----------------KQVLINCWADKIYEVKELADADALK 100 (720)
Q Consensus 40 ~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-----------------~~v~~~~~~~~~~~l~~L~~~es~~ 100 (720)
.+|+||+++.. +..+.+...+...... .|+++|.. ..+...+ ..+.+++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHH
Confidence 49999999754 4456666555443333 34444431 2233322 357999999999999
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhc-CCCchHH
Q 004993 101 LFSRCAFRQDHPVACYMELTYKIIKYAQ-GVPLALK 135 (720)
Q Consensus 101 LF~~~af~~~~~~~~~~~l~~~i~~~c~-GlPLal~ 135 (720)
++...+-...... -.+....+++++. |.|-.+.
T Consensus 267 il~~~~~~~~~~~--~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 267 ILRIRCEEEDVEM--SEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHTTCCB--CHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHhcCCCHHHHH
Confidence 9987764322211 1345567888887 7776554
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=35.69 E-value=2e+02 Score=30.22 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=55.4
Q ss_pred CCCeEEEEEecCCCh-------------HHHHHHHccCCC---CCCCcEEEEEeCChhHHhh---cCCCcEEEcCCCCHH
Q 004993 36 TRKKVLIVFDDVTDR-------------KQIEFLIGELDS---FASGSLIIITTRDKQVLIN---CWADKIYEVKELADA 96 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~-------------~~~~~l~~~~~~---~~~gSrIivTTR~~~v~~~---~~~~~~~~l~~L~~~ 96 (720)
..+..+|+||+++.. .....+...+.. ...+-.||.||.....+.. -..+..+.++..+.+
T Consensus 225 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 304 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 304 (444)
T ss_dssp HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHH
T ss_pred HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHH
Confidence 356789999999854 123344444433 2356677777765432211 133567889999999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCC
Q 004993 97 DALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVP 131 (720)
Q Consensus 97 es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlP 131 (720)
+-.++|..++-+...... ......+++.+.|..
T Consensus 305 ~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~s 337 (444)
T 2zan_A 305 ARAAMFRLHLGSTQNSLT--EADFQELGRKTDGYS 337 (444)
T ss_dssp HHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCC
Confidence 999999877643221111 122345677777743
No 205
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=33.88 E-value=91 Score=24.57 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=52.2
Q ss_pred ccccchHHHHHhcCCCeEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCChhHHhhcC------CCcEEEcCCCCHH
Q 004993 23 IPNIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCW------ADKIYEVKELADA 96 (720)
Q Consensus 23 ~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~------~~~~~~l~~L~~~ 96 (720)
+.++++..|++...++-|-+ -||.+.+.+..-...+..-.+=-+|+|++.++++++.|- .-.++-+-.=.++
T Consensus 10 nndelikkikkevenqgyqv--rdvndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqde 87 (134)
T 2lci_A 10 NNDELIKKIKKEVENQGYQV--RDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDE 87 (134)
T ss_dssp SCHHHHHHHHHHTTTTTCEE--EEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCH
T ss_pred CcHHHHHHHHHHHHccCeee--eecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCch
Confidence 45688999999999988864 578877765543322222233457999999999998762 1223333333344
Q ss_pred HHHHHHHHhhc
Q 004993 97 DALKLFSRCAF 107 (720)
Q Consensus 97 es~~LF~~~af 107 (720)
.-++=|.++.-
T Consensus 88 neleefkrkie 98 (134)
T 2lci_A 88 NELEEFKRKIE 98 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45566766653
No 206
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.51 E-value=1.1e+02 Score=30.92 Aligned_cols=96 Identities=7% Similarity=0.100 Sum_probs=57.6
Q ss_pred CCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCChh-HHhhc-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 004993 37 RKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRDKQ-VLINC-WADKIYEVKELADADALKLFSRCAFRQDHP 112 (720)
Q Consensus 37 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~es~~LF~~~af~~~~~ 112 (720)
+.+-++|+|+++. ....+.+...+.......++|++|.... +.... .-...+.+++++.++..+.....+-.....
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLK 188 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCC
Confidence 3467889999864 3444544433333345677887776543 21111 123478999999999888777655222111
Q ss_pred ChhHHHHHHHHHHHhcCCCchH
Q 004993 113 VACYMELTYKIIKYAQGVPLAL 134 (720)
Q Consensus 113 ~~~~~~l~~~i~~~c~GlPLal 134 (720)
.+ .+..+.+++.++|.+-.+
T Consensus 189 i~--~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 189 LS--PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp BC--HHHHHHHHHHHTTCHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHH
Confidence 11 245567888889887644
No 207
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=33.33 E-value=28 Score=35.00 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=49.2
Q ss_pred CCeEEEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEeCCh-hHHhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 004993 37 RKKVLIVFDDVTD--RKQIEFLIGELDSFASGSLIIITTRDK-QVLINCWADKIYEVKELADADALKLFSRCA 106 (720)
Q Consensus 37 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~~~~~~l~~L~~~es~~LF~~~a 106 (720)
+++-++|+|+++. ....+.|...+....+.+++|.+|.+. .+....... +++++++++++..+...+.+
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 4566889999975 445666665555555678888877554 454444444 99999999999999887765
No 208
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.92 E-value=70 Score=33.98 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=54.6
Q ss_pred CCCeEEEEEecCCCh--HHHHHHHccCCCCCCCcEEEE-EeCChh--HHhh-cCCCcEEEcCCCCHHHHHHHHHHhhcCC
Q 004993 36 TRKKVLIVFDDVTDR--KQIEFLIGELDSFASGSLIII-TTRDKQ--VLIN-CWADKIYEVKELADADALKLFSRCAFRQ 109 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIiv-TTR~~~--v~~~-~~~~~~~~l~~L~~~es~~LF~~~af~~ 109 (720)
.+++.+|+||+++.. .+.+.+...+.. +. -++|. ||.+.. +... ..-..++.+++++.+|..+++.+.+-..
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~-v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~ 181 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-GT-ITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK 181 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-TS-CEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-Cc-eEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHH
Confidence 467899999999754 333333333322 22 23333 555442 1111 1223488999999999999988775431
Q ss_pred C-----CCChhHHHHHHHHHHHhcCCCchHH
Q 004993 110 D-----HPVACYMELTYKIIKYAQGVPLALK 135 (720)
Q Consensus 110 ~-----~~~~~~~~l~~~i~~~c~GlPLal~ 135 (720)
. ....--.+....++++++|.+-.+.
T Consensus 182 ~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 182 TRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred hhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 1 1111123455677888888776654
No 209
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=30.69 E-value=3.1e+02 Score=26.50 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=54.9
Q ss_pred CCCeEEEEEecCCCh-------------HH----HHHHHccCCC-CCCCcEEEEEeCChh-----HHhhcCCCcEEEcCC
Q 004993 36 TRKKVLIVFDDVTDR-------------KQ----IEFLIGELDS-FASGSLIIITTRDKQ-----VLINCWADKIYEVKE 92 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~-------------~~----~~~l~~~~~~-~~~gSrIivTTR~~~-----v~~~~~~~~~~~l~~ 92 (720)
..+..+|+||+++.. .. +..+.+.... .+.+-.||.||...+ +... .+..+.++.
T Consensus 111 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~ 188 (297)
T 3b9p_A 111 HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR--FTKRVYVSL 188 (297)
T ss_dssp HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH--CCEEEECCC
T ss_pred HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh--CCeEEEeCC
Confidence 356789999999643 11 1222221111 124566777887643 3332 345788888
Q ss_pred CCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCc-hHHHH
Q 004993 93 LADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPL-ALKVL 137 (720)
Q Consensus 93 L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPL-al~~l 137 (720)
.+.++-.+++...+-....... .+....+++++.|.+- ++..+
T Consensus 189 p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 189 PDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 8888888888776543222111 2344667888888876 44444
No 210
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=30.12 E-value=1e+02 Score=30.82 Aligned_cols=99 Identities=13% Similarity=0.196 Sum_probs=57.8
Q ss_pred CCeEEEEEecCCCh--HHHHHHHccCCCC------------------CCCcEEEEEeCChhHHh-h--cCCCcEEEcCCC
Q 004993 37 RKKVLIVFDDVTDR--KQIEFLIGELDSF------------------ASGSLIIITTRDKQVLI-N--CWADKIYEVKEL 93 (720)
Q Consensus 37 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~------------------~~gSrIivTTR~~~v~~-~--~~~~~~~~l~~L 93 (720)
.+..+|+||+++.. ...+.+...+... .++-++|.+|....... . -..+.++.++.+
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 45678999999853 3333333222111 11346776666533211 0 023468999999
Q ss_pred CHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHH
Q 004993 94 ADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVL 137 (720)
Q Consensus 94 ~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~l 137 (720)
+.++..+++...+-.... .--.+....+++.+.|.|-.+..+
T Consensus 185 ~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 185 KDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 999999998877643221 111345566777889988555433
No 211
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=28.72 E-value=31 Score=30.86 Aligned_cols=65 Identities=12% Similarity=0.026 Sum_probs=36.9
Q ss_pred CCCeEEEEEecCCChH---------H-HHHHHccCCCCCCCcEEEEEeCChhHHhhcC-------CCcEEEcCCCCHHHH
Q 004993 36 TRKKVLIVFDDVTDRK---------Q-IEFLIGELDSFASGSLIIITTRDKQVLINCW-------ADKIYEVKELADADA 98 (720)
Q Consensus 36 ~~kr~LlVLDDv~~~~---------~-~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~-------~~~~~~l~~L~~~es 98 (720)
.+++.+|||||++... . .+.+..... ..+-.+|.||.......... --..+.++.++.++.
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~ 190 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 190 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHH
Confidence 3568899999997642 1 222222111 12445777777655332211 112688999998887
Q ss_pred HHHH
Q 004993 99 LKLF 102 (720)
Q Consensus 99 ~~LF 102 (720)
.+++
T Consensus 191 ~~il 194 (195)
T 1jbk_A 191 IAIL 194 (195)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 6653
No 212
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=26.00 E-value=83 Score=32.71 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=30.4
Q ss_pred EEEEEecCCCh---HHHHHHHccCCCCCCCcEEEEEeCChhHHhhcCCCcEEEc
Q 004993 40 VLIVFDDVTDR---KQIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEV 90 (720)
Q Consensus 40 ~LlVLDDv~~~---~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l 90 (720)
=+|+||++... ...+.+...+.....|.-||++|.+.+++.. ++.++.|
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 68899999753 2222222222111247789999999999864 5666666
No 213
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=24.94 E-value=1.5e+02 Score=31.30 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=55.4
Q ss_pred EEEEecCCC--hHHHHHHHccCCCCCCCcEEEEEe---------CC----h-----hHHhhcCCCcEEEcCCCCHHHHHH
Q 004993 41 LIVFDDVTD--RKQIEFLIGELDSFASGSLIIITT---------RD----K-----QVLINCWADKIYEVKELADADALK 100 (720)
Q Consensus 41 LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTT---------R~----~-----~v~~~~~~~~~~~l~~L~~~es~~ 100 (720)
++++|+++. .+..+.|.......... -+|+.| .+ . .+...+ ..+.+++++.++..+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMKQ 373 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHHH
Confidence 889999974 45677777666544344 344344 22 1 133222 357999999999999
Q ss_pred HHHHhhcC-CCCCChhHHHHHHHHHHHh-cCCCchHHHH
Q 004993 101 LFSRCAFR-QDHPVACYMELTYKIIKYA-QGVPLALKVL 137 (720)
Q Consensus 101 LF~~~af~-~~~~~~~~~~l~~~i~~~c-~GlPLal~~l 137 (720)
.....+-. ..... .+....+++.+ +|.|..+..+
T Consensus 374 iL~~~~~~~~~~~~---~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 374 IIKIRAQTEGINIS---EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHTCCBC---HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHhCCCCC---HHHHHHHHHHccCCCHHHHHHH
Confidence 99876521 11112 33456677888 7877755443
Done!