Query 004995
Match_columns 720
No_of_seqs 370 out of 2556
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 16:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2301 Voltage-gated Ca2+ cha 100.0 4.3E-64 9.4E-69 603.2 29.2 445 137-674 876-1409(1592)
2 KOG2302 T-type voltage-gated C 100.0 9.2E-62 2E-66 530.2 39.5 459 139-677 1162-1696(1956)
3 KOG2301 Voltage-gated Ca2+ cha 100.0 7.3E-55 1.6E-59 523.7 32.1 483 138-677 105-673 (1592)
4 KOG2302 T-type voltage-gated C 100.0 5.1E-51 1.1E-55 446.2 21.4 526 138-677 656-1400(1956)
5 PF00520 Ion_trans: Ion transp 99.9 4.7E-22 1E-26 197.2 12.1 198 456-661 1-200 (200)
6 KOG3713 Voltage-gated K+ chann 99.9 9.9E-21 2.1E-25 201.5 18.5 248 407-679 172-444 (477)
7 PLN03223 Polycystin cation cha 99.8 7E-19 1.5E-23 203.1 22.2 199 454-672 1178-1429(1634)
8 KOG1545 Voltage-gated shaker-l 99.7 2.5E-17 5.3E-22 166.8 7.1 251 404-679 168-460 (507)
9 PF00520 Ion_trans: Ion transp 99.7 3.8E-16 8.2E-21 154.7 11.4 158 137-294 1-200 (200)
10 KOG3713 Voltage-gated K+ chann 99.6 8.5E-14 1.8E-18 148.9 21.0 170 137-310 244-442 (477)
11 PLN03223 Polycystin cation cha 99.5 1.9E-13 4.1E-18 158.9 20.5 233 44-305 1100-1429(1634)
12 PF08016 PKD_channel: Polycyst 99.5 4.2E-13 9.1E-18 149.6 18.1 189 455-667 214-424 (425)
13 KOG3599 Ca2+-modulated nonsele 99.5 5.5E-13 1.2E-17 154.9 18.1 199 454-675 468-689 (798)
14 KOG4390 Voltage-gated A-type K 99.4 3.6E-15 7.8E-20 152.3 -9.2 237 407-675 165-419 (632)
15 PF08016 PKD_channel: Polycyst 99.2 2E-10 4.3E-15 128.2 15.5 159 141-300 219-424 (425)
16 KOG3599 Ca2+-modulated nonsele 99.2 4.7E-10 1E-14 130.8 18.8 167 141-307 474-688 (798)
17 TIGR00870 trp transient-recept 99.2 3.1E-10 6.7E-15 135.8 17.8 219 455-677 392-627 (743)
18 KOG1545 Voltage-gated shaker-l 98.9 9.2E-09 2E-13 105.3 12.7 159 137-301 257-449 (507)
19 KOG1419 Voltage-gated K+ chann 98.8 1.2E-08 2.7E-13 109.9 10.8 242 408-676 76-333 (654)
20 KOG3609 Receptor-activated Ca2 98.7 1.3E-07 2.8E-12 107.5 14.8 214 460-677 392-623 (822)
21 KOG4390 Voltage-gated A-type K 98.6 1.4E-09 3.1E-14 111.8 -3.9 163 138-302 232-413 (632)
22 TIGR00870 trp transient-recept 98.6 4E-06 8.7E-11 100.6 21.5 168 139-306 395-623 (743)
23 PLN03192 Voltage-dependent pot 98.1 8.1E-05 1.8E-09 90.2 18.3 74 421-497 63-151 (823)
24 KOG1419 Voltage-gated K+ chann 97.6 0.0013 2.9E-08 71.9 14.8 77 135-214 127-216 (654)
25 KOG3609 Receptor-activated Ca2 97.5 0.003 6.5E-08 72.8 17.3 168 139-306 387-619 (822)
26 KOG3676 Ca2+-permeable cation 97.4 0.0061 1.3E-07 70.0 17.9 118 551-677 539-659 (782)
27 KOG0510 Ankyrin repeat protein 97.4 0.0018 4E-08 73.9 13.1 178 468-671 579-763 (929)
28 KOG3733 Mucolipidin and relate 97.3 0.0013 2.7E-08 69.7 9.7 131 525-675 384-517 (566)
29 KOG3533 Inositol 1,4,5-trispho 96.9 0.067 1.5E-06 63.9 20.0 145 533-677 2400-2581(2706)
30 KOG3614 Ca2+/Mg2+-permeable ca 96.9 0.015 3.2E-07 70.2 14.6 196 460-676 830-1053(1381)
31 KOG0510 Ankyrin repeat protein 96.8 0.043 9.4E-07 63.2 17.1 146 157-305 586-764 (929)
32 KOG3533 Inositol 1,4,5-trispho 96.5 0.059 1.3E-06 64.3 15.7 44 213-256 2404-2447(2706)
33 KOG0498 K+-channel ERG and rel 96.3 0.092 2E-06 61.4 15.7 96 452-550 117-228 (727)
34 PLN03192 Voltage-dependent pot 96.2 0.71 1.5E-05 56.3 24.0 41 137-178 96-151 (823)
35 KOG3614 Ca2+/Mg2+-permeable ca 96.0 0.27 5.9E-06 59.9 17.7 159 146-305 835-1049(1381)
36 PF13499 EF-hand_7: EF-hand do 94.2 0.041 9E-07 43.9 2.9 64 317-381 2-65 (66)
37 KOG3676 Ca2+-permeable cation 93.4 6.4 0.00014 46.1 19.5 78 228-305 540-654 (782)
38 cd00213 S-100 S-100: S-100 dom 93.2 0.71 1.5E-05 39.2 9.0 75 313-387 6-82 (88)
39 cd05022 S-100A13 S-100A13: S-1 92.2 0.56 1.2E-05 40.1 7.0 67 315-386 8-77 (89)
40 KOG3733 Mucolipidin and relate 92.1 0.84 1.8E-05 49.1 9.4 96 207-302 390-511 (566)
41 smart00027 EH Eps15 homology d 90.7 1.8 3.9E-05 37.4 8.8 67 314-387 9-75 (96)
42 PRK10537 voltage-gated potassi 89.8 4.4 9.5E-05 44.7 12.9 103 521-653 108-210 (393)
43 cd05031 S-100A10_like S-100A10 89.7 1.9 4.2E-05 37.1 8.1 72 315-386 8-81 (94)
44 cd00052 EH Eps15 homology doma 89.6 1.6 3.5E-05 34.4 7.1 63 318-387 2-64 (67)
45 COG5126 FRQ1 Ca2+-binding prot 89.6 0.86 1.9E-05 43.3 6.2 65 313-382 90-154 (160)
46 cd05027 S-100B S-100B: S-100B 89.6 1.8 4E-05 36.9 7.7 70 316-386 9-81 (88)
47 cd05026 S-100Z S-100Z: S-100Z 89.5 1.9 4.2E-05 37.1 8.0 70 316-385 11-82 (93)
48 cd05025 S-100A1 S-100A1: S-100 89.5 2.5 5.4E-05 36.2 8.6 70 315-385 9-81 (92)
49 cd05023 S-100A11 S-100A11: S-1 86.4 4.9 0.00011 34.3 8.4 71 316-386 10-82 (89)
50 KOG0498 K+-channel ERG and rel 86.2 14 0.00031 43.7 14.6 39 138-177 122-175 (727)
51 KOG0028 Ca2+-binding protein ( 85.8 3.8 8.3E-05 38.6 7.8 64 314-382 105-168 (172)
52 cd00051 EFh EF-hand, calcium b 85.3 3.1 6.8E-05 31.3 6.3 60 317-381 2-61 (63)
53 KOG0044 Ca2+ sensor (EF-Hand s 84.4 2.6 5.7E-05 41.4 6.5 67 317-383 102-174 (193)
54 KOG0027 Calmodulin and related 83.7 3.9 8.5E-05 38.5 7.3 63 314-381 84-146 (151)
55 KOG2243 Ca2+ release channel ( 83.0 2 4.4E-05 51.9 5.8 138 526-677 4790-4934(5019)
56 KOG0027 Calmodulin and related 82.9 4.7 0.0001 38.0 7.5 67 314-385 7-73 (151)
57 cd00252 SPARC_EC SPARC_EC; ext 81.7 6.9 0.00015 35.2 7.6 62 312-382 45-106 (116)
58 KOG1420 Ca2+-activated K+ chan 81.6 0.96 2.1E-05 50.2 2.5 47 453-499 163-210 (1103)
59 PTZ00183 centrin; Provisional 81.3 5.3 0.00011 37.4 7.3 63 315-382 90-152 (158)
60 PF14788 EF-hand_10: EF hand; 81.0 2.7 5.9E-05 31.7 3.9 35 351-385 16-50 (51)
61 COG5126 FRQ1 Ca2+-binding prot 80.4 7.2 0.00016 37.1 7.6 66 315-386 20-85 (160)
62 PF00036 EF-hand_1: EF hand; 78.9 1.6 3.5E-05 28.8 1.9 26 358-383 2-27 (29)
63 PTZ00184 calmodulin; Provision 78.4 7.1 0.00015 35.9 7.1 61 316-381 85-145 (149)
64 cd05024 S-100A10 S-100A10: A s 76.8 13 0.00027 32.0 7.3 55 331-386 23-78 (91)
65 PTZ00184 calmodulin; Provision 76.4 11 0.00025 34.5 7.9 64 315-383 11-74 (149)
66 PTZ00183 centrin; Provisional 73.9 14 0.00031 34.4 7.9 64 315-383 17-80 (158)
67 cd05030 calgranulins Calgranul 73.8 25 0.00055 29.8 8.5 59 328-386 23-81 (88)
68 KOG0036 Predicted mitochondria 73.2 13 0.00027 40.5 7.7 63 313-380 80-142 (463)
69 PF13833 EF-hand_8: EF-hand do 72.3 7.1 0.00015 29.4 4.3 50 329-382 2-51 (54)
70 KOG0377 Protein serine/threoni 71.7 30 0.00064 37.9 10.0 77 309-386 541-617 (631)
71 KOG1420 Ca2+-activated K+ chan 70.9 13 0.00028 41.7 7.4 66 138-214 167-233 (1103)
72 KOG0500 Cyclic nucleotide-gate 70.4 1.7E+02 0.0037 32.9 15.7 47 449-495 26-85 (536)
73 KOG2243 Ca2+ release channel ( 69.4 7.3 0.00016 47.5 5.3 91 215-305 4803-4929(5019)
74 cd05029 S-100A6 S-100A6: S-100 68.6 41 0.00089 28.6 8.6 68 317-386 12-81 (88)
75 PF12763 EF-hand_4: Cytoskelet 65.6 20 0.00042 31.6 6.2 64 314-385 9-72 (104)
76 KOG0034 Ca2+/calmodulin-depend 65.2 14 0.00031 36.2 5.9 66 315-382 104-173 (187)
77 PF13202 EF-hand_5: EF hand; P 62.6 5.5 0.00012 25.2 1.6 23 359-381 2-24 (25)
78 KOG0031 Myosin regulatory ligh 55.5 33 0.00072 32.3 6.0 71 314-384 31-129 (171)
79 KOG0500 Cyclic nucleotide-gate 54.4 37 0.00081 37.9 7.1 106 136-254 32-150 (536)
80 PF13405 EF-hand_6: EF-hand do 53.5 11 0.00024 24.9 2.0 26 358-383 2-27 (31)
81 PRK12309 transaldolase/EF-hand 52.7 45 0.00098 36.8 7.7 53 314-384 333-385 (391)
82 PF06512 Na_trans_assoc: Sodiu 51.2 3.3 7.2E-05 42.4 -1.3 24 407-430 216-239 (239)
83 KOG0377 Protein serine/threoni 50.3 93 0.002 34.3 9.1 77 313-389 462-580 (631)
84 KOG0501 K+-channel KCNQ [Inorg 49.4 31 0.00068 39.1 5.6 42 453-495 250-305 (971)
85 PLN02964 phosphatidylserine de 46.2 58 0.0013 38.3 7.5 64 316-384 180-243 (644)
86 PF00036 EF-hand_1: EF hand; 45.4 25 0.00055 23.1 2.7 26 317-342 2-27 (29)
87 KOG0036 Predicted mitochondria 44.9 77 0.0017 34.7 7.6 66 311-380 10-75 (463)
88 COG2981 CysZ Uncharacterized p 43.7 2.4E+02 0.0052 28.7 10.2 87 206-308 14-109 (250)
89 COG1377 FlhB Flagellar biosynt 42.5 3.4E+02 0.0073 29.6 12.0 16 565-580 99-114 (363)
90 PF10669 Phage_Gp23: Protein g 39.6 73 0.0016 27.2 5.1 30 637-666 13-42 (121)
91 KOG0037 Ca2+-binding protein, 38.5 1.1E+02 0.0024 30.6 7.0 98 321-440 100-197 (221)
92 KOG0499 Cyclic nucleotide-gate 36.6 4.6E+02 0.01 30.4 12.1 44 452-495 261-318 (815)
93 PF11044 TMEMspv1-c74-12: Plec 34.5 58 0.0012 23.7 3.2 14 241-254 14-27 (49)
94 PRK04949 putative sulfate tran 33.3 4.7E+02 0.01 27.0 11.1 94 205-307 15-110 (251)
95 PRK10537 voltage-gated potassi 31.7 7.2E+02 0.016 27.5 13.0 55 195-255 106-160 (393)
96 PF03904 DUF334: Domain of unk 30.8 74 0.0016 31.9 4.5 20 267-286 199-219 (230)
97 PLN02964 phosphatidylserine de 30.6 1.3E+02 0.0028 35.5 7.2 66 312-385 140-208 (644)
98 PF14658 EF-hand_9: EF-hand do 29.9 1.3E+02 0.0029 24.1 5.0 58 320-381 3-61 (66)
99 KOG0041 Predicted Ca2+-binding 28.2 2.4E+02 0.0051 28.0 7.2 62 316-382 100-161 (244)
100 KOG0046 Ca2+-binding actin-bun 26.7 1.9E+02 0.0041 32.8 7.1 67 314-383 18-84 (627)
101 PF07885 Ion_trans_2: Ion chan 26.7 2.2E+02 0.0047 23.2 6.1 56 604-666 23-78 (79)
102 PF10591 SPARC_Ca_bdg: Secrete 24.8 66 0.0014 28.7 2.8 59 314-379 53-111 (113)
103 TIGR01404 FlhB_rel_III type II 24.2 5.6E+02 0.012 27.8 10.2 19 642-660 180-198 (342)
104 PF11044 TMEMspv1-c74-12: Plec 23.3 1.6E+02 0.0035 21.4 3.8 26 646-671 7-32 (49)
105 PF13071 DUF3935: Protein of u 23.2 1.1E+02 0.0024 23.9 3.2 19 238-256 12-30 (68)
106 KOG0501 K+-channel KCNQ [Inorg 22.8 6.2E+02 0.013 29.3 10.1 22 484-505 249-270 (971)
107 PRK08156 type III secretion sy 22.4 6.6E+02 0.014 27.4 10.3 14 567-580 89-102 (361)
108 COG5249 RER1 Golgi protein inv 22.1 1.8E+02 0.0039 27.0 4.9 22 650-671 65-86 (180)
109 PF13608 Potyvirid-P3: Protein 21.9 7.2E+02 0.016 28.0 10.9 65 277-342 245-315 (445)
110 smart00054 EFh EF-hand, calciu 21.9 75 0.0016 18.9 2.0 24 359-382 3-26 (29)
111 PRK12721 secretion system appa 21.0 6.6E+02 0.014 27.3 10.0 16 566-581 93-108 (349)
112 KOG0031 Myosin regulatory ligh 20.6 3.7E+02 0.008 25.6 6.7 63 314-381 100-162 (171)
113 PF01007 IRK: Inward rectifier 20.2 3.1E+02 0.0068 29.6 7.3 65 601-670 80-144 (336)
114 KOG3088 Secretory carrier memb 20.2 1E+03 0.022 25.0 14.4 49 243-291 210-262 (313)
No 1
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-64 Score=603.24 Aligned_cols=445 Identities=24% Similarity=0.417 Sum_probs=385.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhccchhhhcccCccchhhHHHHHHHHHHHHhhhcCCcccccchhhhhhhhhhHHhhccchh
Q 004995 137 VYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQ 216 (720)
Q Consensus 137 ~~e~~~l~if~~e~~~k~~~~g~~~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~~~~~lR~~r~lR~lrli~~~~~ 216 (720)
..|.+|+.+|++|+++|++++|...|++|.||++|++++++++++++.+.. .....+.+|++|+|||+|.++.+++
T Consensus 876 y~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~----~~~~ik~lr~lRaLRPLR~i~r~~~ 951 (1592)
T KOG2301|consen 876 YADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK----ILSLIKSLRILRALRPLRALSRFPG 951 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHccc
Confidence 369999999999999999999999999999999999999999999988765 2236899999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--------------------------------------
Q 004995 217 LRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ-------------------------------------- 258 (720)
Q Consensus 217 lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~-------------------------------------- 258 (720)
+|.++.++.+++|++++++++.++++++||++|+++|+|+..
T Consensus 952 mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~~ 1031 (1592)
T KOG2301|consen 952 MRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRKF 1031 (1592)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEecccc
Confidence 999999999999999999999999999999999999999753
Q ss_pred ------------------ccch---------------hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 259 ------------------DVWI---------------PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 305 (720)
Q Consensus 259 ------------------d~w~---------------p~~~~~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~~~~~ 305 (720)
+||. |.+..+.+.++||++|+++|.||.+|+|+|+|++||+++.+++
T Consensus 1032 nfDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~ 1111 (1592)
T KOG2301|consen 1032 NFDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKA 1111 (1592)
T ss_pred ccccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhh
Confidence 7775 4456778899999999999999999999999999999999887
Q ss_pred HHH---HHHHHHHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHH
Q 004995 306 VSE---MDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 382 (720)
Q Consensus 306 ~~~---~~~~r~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~ 382 (720)
..+ .+++++.. ....++ .
T Consensus 1112 ~~~~~~~eq~~~~~-----------------------~~~~l~---s--------------------------------- 1132 (1592)
T KOG2301|consen 1112 GGTFMTEEQKKRLN-----------------------AAKKLG---S--------------------------------- 1132 (1592)
T ss_pred hhhhhhHHHHHHHH-----------------------HHHHhc---C---------------------------------
Confidence 763 11111110 001110 0
Q ss_pred HHHHhhhccCCCccccccCCccccchHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 004995 383 NAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFG 462 (720)
Q Consensus 383 ~~~~~~~~k~~~~~~~~~~p~~~~~~~r~~~~~iv~~~~f~~~i~~iilln~v~l~~~~~~~~~~~~~~~~l~~~~~~f~ 462 (720)
++.++ +.| ...+++|..++.++.++.|++.+...+++|++.++++++ .++......+..++.+|+
T Consensus 1133 ----k~~~r-~ip--------r~~~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~--~qs~~~~~~l~~in~vft 1197 (1592)
T KOG2301|consen 1133 ----KPPQR-PIP--------RPRNKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETY--DQSDTYTAILTILNAVFI 1197 (1592)
T ss_pred ----CCCCC-CCC--------CCcchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHH
Confidence 01111 111 123567899999999999999999999999999999886 455566678899999999
Q ss_pred HHHHHHHHHHHhhcccchhhcccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 463 WIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYR 542 (720)
Q Consensus 463 ~iF~lE~~lKi~a~G~~~y~~~~wN~fD~~ivi~~~i~~i~~~~~~~~~~~~~~~~~~r~l~~lR~lR~lrli~~~~~lr 542 (720)
.+|++|+++|++|+|++.||+++||+||++++++++++.+++...+. +.++....++.|++|+.|++|+++..+++|
T Consensus 1198 ~~Ft~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~---~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir 1274 (1592)
T KOG2301|consen 1198 VLFTIECILKVIALRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK---YESSPTLLRFLRLFRVGRFLRLIPQAKTIR 1274 (1592)
T ss_pred HHHHHHHHHHHHHhhhhHhccccchheEeeeeeHhHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHhccccchhH
Confidence 99999999999999999999999999999999999999998877653 123456789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCChhHHHHHHHHHHhhcCH
Q 004995 543 GFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNW 622 (720)
Q Consensus 543 ~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~~~t~~~W 622 (720)
.++.|++.|+|++.++.+++++++++||++||++||....+ +- +.++||.++++|++.||++.|+|||
T Consensus 1275 ~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~-~i-----------~~~~NF~tf~~a~i~LFr~~Tge~W 1342 (1592)
T KOG2301|consen 1275 TLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG-GI-----------NDHNNFRTFPNSMVVLFRCATGEGW 1342 (1592)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc-cc-----------CCCcccccchhheeeeeehhhhhhH
Confidence 99999999999999999999999999999999999999876 11 1158999999999999999999999
Q ss_pred HHHHHHHHh--------------hhC-CceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 004995 623 QVWMQSYKE--------------LTG-TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 674 (720)
Q Consensus 623 ~~im~~~~~--------------~~~-~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~ 674 (720)
+++|.+++. .|| ..+|++||++|+++++++++|||||+|+|||+..+++.++
T Consensus 1343 ~~im~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~ 1409 (1592)
T KOG2301|consen 1343 NDIMDDCLNSKPFCDPDDGNNGTDCGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATEDSSE 1409 (1592)
T ss_pred HHHHHHHhcCCCCCCCCCCCcccccCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 999999764 255 6789999999999999999999999999999999987774
No 2
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-62 Score=530.19 Aligned_cols=459 Identities=22% Similarity=0.339 Sum_probs=382.6
Q ss_pred HHHHHHHHHHHHHHhHhhccc----hhhhcccCccchhhHHHHHHHHHHHHhhhcCCccc---ccchhhhhhhhhhHHhh
Q 004995 139 EGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAF---NFLPLRIAPYIRVVFFI 211 (720)
Q Consensus 139 e~~~l~if~~e~~~k~~~~g~----~~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~---~~~~lR~~r~lR~lrli 211 (720)
.++|+++|++|+.+|+++.|+ .+|+++.||.+|++++.++++|++++....+ ... .++++|.+|.|||+|.+
T Consensus 1162 nyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~-g~kILgVlrvLRlLRtlRpLRvi 1240 (1956)
T KOG2302|consen 1162 NYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAG-GAKILGVLRVLRLLRTLRPLRVI 1240 (1956)
T ss_pred chHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhhHHHHH
Confidence 689999999999999998885 6899999999999999999999999877422 111 35677888889999999
Q ss_pred ccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc---------------------------------
Q 004995 212 LNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ--------------------------------- 258 (720)
Q Consensus 212 ~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~--------------------------------- 258 (720)
++.++++.++.++..++|.|+++.+++..|+++|+++|+++|+|+..
T Consensus 1241 Sra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnl 1320 (1956)
T KOG2302|consen 1241 SRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNL 1320 (1956)
T ss_pred hhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchH
Confidence 99999999999999999999999999999999999999999997642
Q ss_pred -------------ccch---------------hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 259 -------------DVWI---------------PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMD 310 (720)
Q Consensus 259 -------------d~w~---------------p~~~~~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~~~~~~~~~~ 310 (720)
|+|. |+.+.++|..+|||+|.+|.+||++|+|++|+++||.+.++++.++..
T Consensus 1321 gqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeA 1400 (1956)
T KOG2302|consen 1321 GQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEA 1400 (1956)
T ss_pred HHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 556899999999999999999999999999999999999887766544
Q ss_pred HHHHHH-HHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHHhhh
Q 004995 311 RMRRRT-LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRF 389 (720)
Q Consensus 311 ~~r~~~-l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~~~~ 389 (720)
.+|+.+ +++ +. ++.
T Consensus 1401 rRreEKrLrr------------------------le-----------------------------------------kkr 1415 (1956)
T KOG2302|consen 1401 RRREEKRLRR------------------------LE-----------------------------------------KKR 1415 (1956)
T ss_pred HHHHHHHHHH------------------------HH-----------------------------------------HHH
Confidence 333221 111 10 001
Q ss_pred ccCCCccccccCCccccchHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHH
Q 004995 390 QKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEM 469 (720)
Q Consensus 390 ~k~~~~~~~~~~p~~~~~~~r~~~~~iv~~~~f~~~i~~iilln~v~l~~~~~~~~~~~~~~~~l~~~~~~f~~iF~lE~ 469 (720)
++..+.++... .++.|+.++....+.+.+.++.++|.+|++.+..+.+ .++.+.++.+.+.|+.|+++|+.|+
T Consensus 1416 R~Aq~kpyyse-----yt~~rrlIh~~ctShyld~fit~ii~LnvVtms~ehy--qqp~sldealkycny~ft~vfV~Ea 1488 (1956)
T KOG2302|consen 1416 RAAQRKPYYSE-----YTMTRRLIHSKCTSHYLDQFITFIICLNVVTMSEEHY--QQPTSLDEALKYCNYRFTAVFVLEA 1488 (1956)
T ss_pred HhccCCccccc-----ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--hCcccHHHHhhhcceeeeehhHHHH
Confidence 11111222111 1478899999999999999999999999999999886 4556677899999999999999999
Q ss_pred HHHHhhcccchhhcccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 470 ALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFL 549 (720)
Q Consensus 470 ~lKi~a~G~~~y~~~~wN~fD~~ivi~~~i~~i~~~~~~~~~~~~~~~~~~r~l~~lR~lR~lrli~~~~~lr~l~~tl~ 549 (720)
++|.++.|.++||++.||.+|+.|+++++.+..+..+..+ ...-.|..++|++|++|+.|++|+++...+||.++.|++
T Consensus 1489 V~klvafG~rrFfkdrwnqldlaivlls~mgitleeie~n-aalpinptiirimrvlriarvlkllkmatgmralldtvv 1567 (1956)
T KOG2302|consen 1489 VLKLVAFGERRFFKDRWNQLDLAIVLLSVMGITLEEIEIN-AALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVV 1567 (1956)
T ss_pred HHHHHHHhHHHHHhhhhhhhhHHHHHHHHhcccHhheeec-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998877644322 112237789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCChhHHHHHHHHHHhhcCHHHHHHHH
Q 004995 550 TLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSY 629 (720)
Q Consensus 550 ~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~~~t~~~W~~im~~~ 629 (720)
+++|.+.++.++..++++|||.+|+++||...+ |.+-++.+... +..|.||+.|++|||+++|++||+.||.|.
T Consensus 1568 qalpqvgnlgllfmllffiyaalgvelfg~lec--~e~npceglsr----hatf~nfgmafltlfrvstgdnwngimkdt 1641 (1956)
T KOG2302|consen 1568 QALPQVGNLGLLFMLLFFIYAALGVELFGKLEC--NEENPCEGLSR----HATFENFGMAFLTLFRVSTGDNWNGIMKDT 1641 (1956)
T ss_pred HhcccccchhHHHHHHHHHHHHHHHHHhccccc--CCCCCcccccc----ccchhhhchHhhhheeeccCCcccchhhhh
Confidence 999999999999989999999999999999854 33333333322 468999999999999999999999999997
Q ss_pred HhhhC-------CceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004995 630 KELTG-------TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 677 (720)
Q Consensus 630 ~~~~~-------~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 677 (720)
...|. ...+.+||++|.+...++++|++||+++....+..++.++..|
T Consensus 1642 lrdc~~e~~cls~~~sp~yfvsfvltaqfvlvnvvvavlmkhleesnkea~edae 1696 (1956)
T KOG2302|consen 1642 LRDCTHEESCLSQFVSPLYFVSFVLTAQFVLVNVVVAVLMKHLEESNKEAQEDAE 1696 (1956)
T ss_pred HhhcccchhhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhchhhhhhhh
Confidence 65543 3568999999999999999999999999877766555444443
No 3
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-55 Score=523.74 Aligned_cols=483 Identities=21% Similarity=0.339 Sum_probs=380.9
Q ss_pred HHHHHHHHHHHHHHHhHhhccc----hhhhcccCccchhhHHHHHHHHHHHHhhhcCCcccccchhhhhhhhhhHHhhcc
Q 004995 138 YEGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILN 213 (720)
Q Consensus 138 ~e~~~l~if~~e~~~k~~~~g~----~~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~~~~~lR~~r~lR~lrli~~ 213 (720)
.|+.++.+|+.|.++|+.+.|. ..|+|||||++|++++++.+++.++... .++.+|.+|++||+|+++.
T Consensus 105 ~e~~f~~i~~~E~~~ki~a~G~~~~~~sylr~~wn~ldf~vvv~~~~s~~~~~~-------~~~~lR~frvlr~lk~vs~ 177 (1592)
T KOG2301|consen 105 AEYTFLGIFTFESVVKILARGFFRCDFSYLRDPWNWLDFVVIVIGLLSTLLHLY-------NIRALRTFRVLRALKLVSG 177 (1592)
T ss_pred cceehhhHHHHHHHHHHHHHHhhcCCCcccCCccccccEEEeeeehHHHhcccc-------chhhhccccccchhhhccC
Confidence 4999999999999999998885 4899999999999999999988876643 5899999999999999999
Q ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----------------------------------
Q 004995 214 IRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ----------------------------------- 258 (720)
Q Consensus 214 ~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~----------------------------------- 258 (720)
.++++..+.++.++..++..+.++.++++.+||++|.++|.|...
T Consensus 178 ~~~lk~~~~~ii~~~~~l~~~~~l~~f~~~ifa~igl~lf~g~l~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 257 (1592)
T KOG2301|consen 178 IPGLKTRVGALIKASKQLVDVVILTFFFLSVFALIGLQLFMGRLTYKCVQPKPNNVTINDRAIPDTYCAPEGIGGLLCGN 257 (1592)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHhhhcCCCCCceeccccCcccccCcCCCCccccCC
Confidence 999999999999999999999999999999999999999976421
Q ss_pred ----------------------------------ccchhhh-----ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 259 ----------------------------------DVWIPAY-----KASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFK 299 (720)
Q Consensus 259 ----------------------------------d~w~p~~-----~~~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~ 299 (720)
|+|...| ..+.|+++||++++++|+|+++|+++||+..+|.
T Consensus 258 ~~~C~~~~~~p~~g~t~Fd~f~~a~lt~f~~~tqe~w~~~~y~~~~a~g~~~~~~Fv~~i~lgsf~~~nl~l~vls~~f~ 337 (1592)
T KOG2301|consen 258 NYVCMQLGANPNGGYTSFDSFGWAFLTVFRLMTQEGWEDLLYLTLDALGKWYMLFFVTLIFLGSFYVKNLFLAVLSMAFA 337 (1592)
T ss_pred ccchhhcCCCCCCCcccchHHHHHHHHHHHHHhhcchHHHHHHHHHhcccceeEeeehhhhhccHHHHHHHHHHhhHHHH
Confidence 8887665 3448999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHH
Q 004995 300 SQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 379 (720)
Q Consensus 300 ~~~~~~~~~~~~~r~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~ 379 (720)
+++++..++.++++.+.. ++.+.+.++..++..+.+.....+ ..++......+...+. .
T Consensus 338 e~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--------------~ 396 (1592)
T KOG2301|consen 338 EERVAFEEEWQFKEPRFQ-EAFEELLEKYEDGIFLAEADGSVE------SGPKSKLFSVDSLEDV--------------N 396 (1592)
T ss_pred HHHHHHHhhhhhhchHHH-HHHHHHHHHHHHHHHHHHHhhhhc------cccchhhhhhhhhhhh--------------h
Confidence 998876665554433322 222222222222221111111100 0011000000000000 0
Q ss_pred HHHHHHHhhhccCCCccccccCCc--------cccchHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhH
Q 004995 380 DLCNAIALRFQKEDVPSCFENLPS--------IYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQ 451 (720)
Q Consensus 380 ~l~~~~~~~~~k~~~~~~~~~~p~--------~~~~~~r~~~~~iv~~~~f~~~i~~iilln~v~l~~~~~~~~~~~~~~ 451 (720)
...+.... ..+++++++.+.++ .++..+++.++.++.++.+.+++.+++++|++.++++++. +.....
T Consensus 397 ~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~i~i~i~lnt~~~a~eh~~--~~~~~~ 472 (1592)
T KOG2301|consen 397 SRVELLSA--VSYKCPLAWYKSAKNFLIWFCCPIWLKFKQWLRKMVFDPFVILFITICIALNTLFMAMEHYE--MTKARN 472 (1592)
T ss_pred hhhhhhhh--hcccCchHhHhhccceeeeccchHHHHHHHHHHHhhhcceehhhhHHHHhhcccEEEEEEeC--CcHHHH
Confidence 00000000 00233333333222 3456788999999999999999999999999999988763 444456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhcccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHH
Q 004995 452 SVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRL 531 (720)
Q Consensus 452 ~~l~~~~~~f~~iF~lE~~lKi~a~G~~~y~~~~wN~fD~~ivi~~~i~~i~~~~~~~~~~~~~~~~~~r~l~~lR~lR~ 531 (720)
..+.+.|.+|+++|+.|+.+|++|.|++.||++.||+||.++++..++... ..+...+.++|.+|++|+
T Consensus 473 ~~l~~~~~vF~~lF~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~~~~-----------~~~~~g~svLr~frllRI 541 (1592)
T KOG2301|consen 473 YLLYLGNVVFTGLFTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLLELL-----------LKNVYGLSVLRSFRLLRI 541 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhHHhc-----------ccchHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999999999885444332 123456889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCChhHHHH
Q 004995 532 IRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMV 611 (720)
Q Consensus 532 lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~a~~ 611 (720)
+|+.+.++.++.++..+.+++.++++++.+++++.++||++|||+|||....+ .+. ..||+||+.|++
T Consensus 542 fkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~-~~~-----------~~~~~~fp~sfl 609 (1592)
T KOG2301|consen 542 FKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLH-CDI-----------HWHFTDFPHSFL 609 (1592)
T ss_pred HHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCC-CCC-----------ccchhhCHHHHH
Confidence 99999999999999999999999999999999999999999999999997664 221 169999999999
Q ss_pred HHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004995 612 TLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 677 (720)
Q Consensus 612 tLf~~~t~~~W~~im~~~~~~~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 677 (720)
++|+ .|+|+|+++|++++...|.++..+||+.++++++++++|+|+|++++||.... ..+.+++
T Consensus 610 ~vFq-lt~e~W~evm~~~~~~~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n~~~~e-l~~~e~~ 673 (1592)
T KOG2301|consen 610 SVFQ-ITCEEWTDVMWDCMEAAGQPLCAIYFIAYFLFGNLVVLNLFLALILDNFESDE-LKKPEQL 673 (1592)
T ss_pred HHHH-HcCCchHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhh-cCChhhh
Confidence 9999 88999999999999999889999999999999999999999999999999887 5454443
No 4
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-51 Score=446.18 Aligned_cols=526 Identities=20% Similarity=0.293 Sum_probs=384.7
Q ss_pred HHHHHHHHHHHHHHHhHhhccchhhhcccCccchhhHHHHHHHHHHHHhhhcCCcccccchhhhhhhhhhHHhhccchhH
Q 004995 138 YEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQL 217 (720)
Q Consensus 138 ~e~~~l~if~~e~~~k~~~~g~~~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~~~~~lR~~r~lR~lrli~~~~~l 217 (720)
-+.+++-.|..|+.+|..+.|+..|.|||.|++|-++++++.-+++-. ....+.++|.+|.+|++++++.++.+
T Consensus 656 ~n~vftsmfalEm~lkla~~g~f~y~rnPynifdgiiv~is~wEiVgq------q~GglsvlrtFrllrvlkLvrf~pal 729 (1956)
T KOG2302|consen 656 DNNVFTSMFALEMDLKLAARGFFRYHRNPYNIFDGIIVAISHWEIVGQ------QDGGLSVLRTFRLLRVLKLVRFSPAL 729 (1956)
T ss_pred hhhhhHHHHHHHHHHhhhhccchhccCCCcccCCCeEEEEEeeEeecc------cCCCcCCCcHHHHHHHHHHHhhhHHH
Confidence 367889999999999999999999999999999999988887665322 22368899999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-------------------------------ccchhhh-
Q 004995 218 RDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ-------------------------------DVWIPAY- 265 (720)
Q Consensus 218 r~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~-------------------------------d~w~p~~- 265 (720)
|+-...+.++..+.+-.-.+++++.++||++||.+||-+.. ++|....
T Consensus 730 qrqlvvl~ktmdnvAtfctllmLfififsIlgmh~fGckfs~e~dtGdt~pDrknfdsllwaivTvfqilTqedwn~vLy 809 (1956)
T KOG2302|consen 730 QRQLVVLMKTMDNVATFCTLLMLFIFIFSILGMHSFGCKFSLETDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLY 809 (1956)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhhhhhhhhccccccccccCCcCCCccccchHHHHHHHHHhhhcccccchhhh
Confidence 99999999999999999999999999999999999985431 6775432
Q ss_pred ----ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----HHHHHHHHHHhhhhcc------
Q 004995 266 ----KASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEM--DRM-----RRRTLGKAFNLIDNYN------ 328 (720)
Q Consensus 266 ----~~~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~~~~~~~~~--~~~-----r~~~l~~af~~L~~~~------ 328 (720)
+.+.|+++||+...-.|+|++.||.+|+.++.|+.......... ++. ..+...+--+.++.+.
T Consensus 810 ngmastSswa~lyfvAlmtfGnYvlfnllvailvEgFqaee~s~rs~~qhDe~q~~~~~~e~fdkl~e~ld~d~k~cp~~ 889 (1956)
T KOG2302|consen 810 NGMASTSSWAPLYFVALMTFGNYVLFNLLVAILVEGFQAEEDSNRSGLQHDEDQHSQNPEEGFDKLQEGLDSDPKLCPHH 889 (1956)
T ss_pred cCccccCCcchhHHHHhhhccceeeeccchhhhhhhcccccccccccccccccccccCccccchhhcccccCccccCccc
Confidence 57889999999999999999999999999999975422111100 000 0000000000111000
Q ss_pred ------------------------------------------c-------C-------------------cCCHHHHHHH
Q 004995 329 ------------------------------------------V-------G-------------------FLNKEQCIKL 340 (720)
Q Consensus 329 ------------------------------------------~-------~-------------------~l~~~~~~~~ 340 (720)
+ + |-....|...
T Consensus 890 ~t~~~H~~~r~sl~~hl~~~~aasP~~~~t~sp~~~~~~~~sR~~S~~~s~~~~~d~~~~pS~rss~~~Pw~~s~awtsR 969 (1956)
T KOG2302|consen 890 HTPNGHLRSRLSLGHHLAHQHAASPHPGETISPDSSVGSYQSRGISDYSSEYHSYDQDSHPSERSSGDHPWGTSYAWTSR 969 (1956)
T ss_pred cCCCCCcccccCCCCccccccCCCCCCCCCcCCCcccccccccccccccCCCccccCCCCchhccCCCCCCccchhhhhc
Confidence 0 0 0000000000
Q ss_pred ---HH-HHhhhcCCCCCChHHHHhH-------------------------------------------------------
Q 004995 341 ---FE-ELNKYRTLPNISREEFELI------------------------------------------------------- 361 (720)
Q Consensus 341 ---~~-~l~~~~~~~~~~~~~~~~l------------------------------------------------------- 361 (720)
.. .+++ .+-+.+..+.+
T Consensus 970 rss~~qslkh----~~~~ge~~SlLsgeygq~ts~~~~~~~~~raAPGpraa~~r~~~s~~~ahPr~~~~aa~Rsas~~r 1045 (1956)
T KOG2302|consen 970 RSSWNQSLKH----QDPSGEYESLLSGEYGQSTSQLSAPHGSRRAAPGPRAASRRRVFSLDVAHPRGSAHAAGRSASTHR 1045 (1956)
T ss_pred ccchhhhccc----CCCcchhhhhhccccccccccccCCCCCccCCCCCccccccccccccccCCCcccccccCCCcccc
Confidence 00 0000 00000000000
Q ss_pred -------------hhhcc-CCCcccCChhhH-HHHHHHHHhhhccCCCc-----cccccCCccccchHHHHHHhccccch
Q 004995 362 -------------FDELD-DTHDFKINLDEF-ADLCNAIALRFQKEDVP-----SCFENLPSIYHSPFSEKLKAFIRSTK 421 (720)
Q Consensus 362 -------------~~~ld-~~~~~~i~~~ef-~~l~~~~~~~~~k~~~~-----~~~~~~p~~~~~~~r~~~~~iv~~~~ 421 (720)
+...+ +..|+...++|= .+.|....+...+..+. +.|.++--..++++|..|++++.|+.
T Consensus 1046 dcngrv~s~~k~v~t~~~s~r~d~d~~~eEg~~~k~~r~r~~i~~~kp~~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~ 1125 (1956)
T KOG2302|consen 1046 DCNGRVTSMSKDVFTQDISTRHDEDEGKEEGQFQKCKRVRKQITRYKPHWCNLRELWSKYLFSPQNRFRVLCQNIIQHKA 1125 (1956)
T ss_pred ccCCccchhhhhhhccCCCCccccccchhcchhHHHHhhhhhhcccCCcchhHHHHHHHHhcCcccHHHHHHHHHHHHhh
Confidence 00000 000000001110 11222222222111111 12333333457899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhHHH-HHHHHHHHHHHHHHHHHHHHhhccc----chhhcccccchhHHHHHH
Q 004995 422 FGYMISIILIVNLVAVIVETTLDIQESSLQSV-WQEVEFVFGWIYVLEMALKIYSYGF----ENYWRDGQNRFDFLVTWV 496 (720)
Q Consensus 422 f~~~i~~iilln~v~l~~~~~~~~~~~~~~~~-l~~~~~~f~~iF~lE~~lKi~a~G~----~~y~~~~wN~fD~~ivi~ 496 (720)
|++++.++|++|++.++++++...+. +.+.+ +..-|++|+.||++|+.+|++|+|+ .+|+++.||.+|++++.+
T Consensus 1126 Fd~vVl~~IfLNcVtialerp~i~~~-s~EriFltlsnyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~v 1204 (1956)
T KOG2302|consen 1126 FDTVVLFFIFLNCVTIALERPAIVEG-STERIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAV 1204 (1956)
T ss_pred hhheehhhhhhhhHHHHhcccccccC-cceEEEEEecchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999998754333 33443 3556799999999999999999996 699999999999999999
Q ss_pred HHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 497 IVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQI 576 (720)
Q Consensus 497 ~~i~~i~~~~~~~~~~~~~~~~~~r~l~~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~l 576 (720)
++++.++......+ ..-..++|++|++|.+|++|.+.+.++++.++.|+..+++.+.+++++.+.++++|+++|+||
T Consensus 1205 sviDilvs~asa~g---~kILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqL 1281 (1956)
T KOG2302|consen 1205 SVIDILVSQASAGG---AKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQL 1281 (1956)
T ss_pred HHHHHHHHHhhhhh---HHHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887665443 223467888899999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCCC-----CCcccccccc----ccCCCChhHHHHHHHHHHhhcCHHHHHHHHHhhh---------CCcee
Q 004995 577 FGGIVNAGNAKLE-----ETDLADDDYL----LFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELT---------GTAWT 638 (720)
Q Consensus 577 F~g~~~~~n~~~~-----~~~~~~~~y~----~~nF~~f~~a~~tLf~~~t~~~W~~im~~~~~~~---------~~~~~ 638 (720)
|+|+.+.|...+. .+++....|. ..||||.++|+++||.+.+-+||..||+|..+.. +++|-
T Consensus 1282 Fkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwm 1361 (1956)
T KOG2302|consen 1282 FKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWM 1361 (1956)
T ss_pred hcccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHH
Confidence 9999988744322 2455556665 5899999999999999999999999999977654 36899
Q ss_pred eeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004995 639 LAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 677 (720)
Q Consensus 639 ~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 677 (720)
.+|||+|+++..++++|+||++++|||.+..+..++++.
T Consensus 1362 llYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeA 1400 (1956)
T KOG2302|consen 1362 LLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEA 1400 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887777765
No 5
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.87 E-value=4.7e-22 Score=197.22 Aligned_cols=198 Identities=28% Similarity=0.516 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc--chhhcccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHH
Q 004995 456 EVEFVFGWIYVLEMALKIYSYGF--ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIR 533 (720)
Q Consensus 456 ~~~~~f~~iF~lE~~lKi~a~G~--~~y~~~~wN~fD~~ivi~~~i~~i~~~~~~~~~~~~~~~~~~r~l~~lR~lR~lr 533 (720)
++|.++.++|++|+++|+++.|+ ++|++++||++|+++++...+..+........ .....+..+++|.+|++|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~R~l~ 75 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSAS-----AQSLLRIFRLLRLLRLLR 75 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--H-----HCHCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhccccccccccccccccccccccc-----ccceEEEEEeeccccccc
Confidence 47899999999999999999998 89999999999999988776555443221110 013578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCChhHHHHHH
Q 004995 534 LLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTL 613 (720)
Q Consensus 534 li~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~a~~tL 613 (720)
+++..+.++.+..++.++.+.+..++.+++++++.||++|+++|++....++... .+..++..+..+|++++.|+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~--~~~~~~~~~~~~f~~~~~s~~~~ 153 (200)
T PF00520_consen 76 LLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPT--WDSENDIYGYENFDSFGESLYWL 153 (200)
T ss_dssp HHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------SS----SSTHHHHSSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhheecccccccccccc--ccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999876543211 11112223357999999999999
Q ss_pred HHHHhhcCHHHHHHHHHhhhCCceeeeehhhhHHHHHHHHHHHHHHHH
Q 004995 614 FNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFV 661 (720)
Q Consensus 614 f~~~t~~~W~~im~~~~~~~~~~~~~iyFi~f~li~~~i~lnLfvavi 661 (720)
++++|++||++++++.+ ..++.++.+||+++.++++++++|+++|++
T Consensus 154 ~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 154 FQTMTGEGWGDVMPSCM-SARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHTTTTCCCCHHHHH-HTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccc-cccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999999998876 334578999999999999999999999986
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.86 E-value=9.9e-21 Score=201.51 Aligned_cols=248 Identities=17% Similarity=0.218 Sum_probs=196.5
Q ss_pred chHHHHHHhccccc-------hHHHHHHHHHHHHHHHHHhhcccccccchh----------------HHHHHHHHHHHHH
Q 004995 407 SPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQESSL----------------QSVWQEVEFVFGW 463 (720)
Q Consensus 407 ~~~r~~~~~iv~~~-------~f~~~i~~iilln~v~l~~~~~~~~~~~~~----------------~~~l~~~~~~f~~ 463 (720)
+.+|++++++++.| .|..+..++|+++++.+|+.+.++.+.... ...+.++|.+|.+
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~ 251 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA 251 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence 35889999999876 488888999999999999998765443222 2358999999999
Q ss_pred HHHHHHHHHHhhc-ccchhhcccccchhHHHHHHHHHHHHHhhcCCCCcccc-chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 464 IYVLEMALKIYSY-GFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFL-SNGEWIRYLLLARMLRLIRLLMHVQQY 541 (720)
Q Consensus 464 iF~lE~~lKi~a~-G~~~y~~~~wN~fD~~ivi~~~i~~i~~~~~~~~~~~~-~~~~~~r~l~~lR~lR~lrli~~~~~l 541 (720)
+|++|+++|++.. ...+|++++.|++|++.++.-++...+......+.... ..+.++|++|++|++|++||.|++.++
T Consensus 252 WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GL 331 (477)
T KOG3713|consen 252 WFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGL 331 (477)
T ss_pred HHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999965 45689999999999999998888887775553222212 233689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCChhHHHHHHHHHHhhcC
Q 004995 542 RGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGN 621 (720)
Q Consensus 542 r~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~~~t~~~ 621 (720)
|.+..|+.+|...+.-++ +|-++|+.+|+...|..+...+ ..+|.++|.++++....||+-|
T Consensus 332 r~lg~Tlr~S~~ElglLl--------lfL~~GI~iFStlvY~~Ek~~~----------~~~FtSIPa~~WWaiVTMTTVG 393 (477)
T KOG3713|consen 332 RTLGLTLRRSYRELGLLL--------LFLAVGIVIFSTLVYFAEKDEP----------DTKFTSIPAGFWWAVVTMTTVG 393 (477)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhcCC----------CCCCccccchhheeeEEEeeec
Confidence 999999999999985443 3444666666666655332222 2469999999999888888887
Q ss_pred HHHHHHHHHhhhCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Q 004995 622 WQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEE 679 (720)
Q Consensus 622 W~~im~~~~~~~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~~~~~ 679 (720)
+.|+ .+..+..-..-+-.+++.++++.|+|.+|++||.+.|.+.+++++..
T Consensus 394 YGDm-------~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~ 444 (477)
T KOG3713|consen 394 YGDM-------VPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAP 444 (477)
T ss_pred ccCc-------cccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhh
Confidence 7665 34456777777888999999999999999999999999888877533
No 7
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.82 E-value=7e-19 Score=203.11 Aligned_cols=199 Identities=19% Similarity=0.238 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-----cchhhcccccchhHHHHHHHHHHHHHhhcC---------------------
Q 004995 454 WQEVEFVFGWIYVLEMALKIYSYG-----FENYWRDGQNRFDFLVTWVIVIGETITLAS--------------------- 507 (720)
Q Consensus 454 l~~~~~~f~~iF~lE~~lKi~a~G-----~~~y~~~~wN~fD~~ivi~~~i~~i~~~~~--------------------- 507 (720)
++++-.+|.++|+.+.+.++...| .++||+++||++|++++++++...++.+..
T Consensus 1178 cEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls 1257 (1634)
T PLN03223 1178 MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLS 1257 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhh
Confidence 456667778888999998887654 478999999999999998887766542110
Q ss_pred ----------CCC----ccccch-------hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 508 ----------PNG----QTFLSN-------GE----WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTI 562 (720)
Q Consensus 508 ----------~~~----~~~~~~-------~~----~~r~l~~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll 562 (720)
|+. ...+.+ .+ +.-++-.++++|++|+++.+++++.+..|+..+.+.++.+++++
T Consensus 1258 ~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF 1337 (1634)
T PLN03223 1258 ASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIF 1337 (1634)
T ss_pred hhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000 01 11234567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCChhHHHHHHHHHHhhcCHHHHHHHHHhhh--CCceeee
Q 004995 563 FCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELT--GTAWTLA 640 (720)
Q Consensus 563 ~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~~~t~~~W~~im~~~~~~~--~~~~~~i 640 (720)
+++++.||++|..+||... .+|.||..|+.|||++++|+. ..++++..... ...++.+
T Consensus 1338 ~IVF~AFAqLG~LLFGt~v-------------------e~FSTf~sSL~TLFqMLLGDf-dYF~eDLk~l~e~nrVLGPI 1397 (1634)
T PLN03223 1338 GMVFVGYAFIGHVIFGNAS-------------------VHFSDMTDSINSLFENLLGDI-TYFNEDLKNLTGLQFVVGMI 1397 (1634)
T ss_pred HHHHHHHHHHHHHHhccCc-------------------hhhcCHHHHHHHHHHHHHcCc-hHHHHHHHhhhcccchHHHH
Confidence 9999999999999999874 379999999999999998754 44454443332 3467999
Q ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004995 641 YFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 672 (720)
Q Consensus 641 yFi~f~li~~~i~lnLfvavi~e~F~~~~~~~ 672 (720)
||++|+++..++++|||+|+|.++|.+..+..
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEVKANA 1429 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999987653
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2.5e-17 Score=166.83 Aligned_cols=251 Identities=14% Similarity=0.185 Sum_probs=188.8
Q ss_pred cccchHHHHHHhccccc-------hHHHHHHHHHHHHHHHHHhhcccccccc------------------h---------
Q 004995 404 IYHSPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQES------------------S--------- 449 (720)
Q Consensus 404 ~~~~~~r~~~~~iv~~~-------~f~~~i~~iilln~v~l~~~~~~~~~~~------------------~--------- 449 (720)
...+.+++.++-+.+.| ....+..++|+++++..|+||.+...+. .
T Consensus 168 lP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~ 247 (507)
T KOG1545|consen 168 LPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLG 247 (507)
T ss_pred CCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCccccccc
Confidence 34578888888887653 3556778899999999999985432110 0
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhhcccccchhHHHHHHHHHHHHHhhcCCCCc----cccchhhHHH
Q 004995 450 ---LQSVWQEVEFVFGWIYVLEMALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQ----TFLSNGEWIR 521 (720)
Q Consensus 450 ---~~~~l~~~~~~f~~iF~lE~~lKi~a~G~-~~y~~~~wN~fD~~ivi~~~i~~i~~~~~~~~~----~~~~~~~~~r 521 (720)
..+.+-++|..|.++|++|.++|.+++.- ..|+++..|++|++.++..++.....++...+. ...-...++|
T Consensus 248 ~~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILR 327 (507)
T KOG1545|consen 248 DTKFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILR 327 (507)
T ss_pred ccccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHH
Confidence 01234689999999999999999999865 468999999999999998888776555443211 1112346889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccccc
Q 004995 522 YLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLF 601 (720)
Q Consensus 522 ~l~~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~ 601 (720)
++|+.|++|++|+-|+.++++.+.+|+..+++.+.- +..|-.+|+-||+..+|..+.+.+ ..
T Consensus 328 ViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgL--------LIFFlfIgviLFsSavYFAEade~----------~S 389 (507)
T KOG1545|consen 328 VIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGL--------LIFFLFIGVILFSSAVYFAEADEP----------ES 389 (507)
T ss_pred HHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhceeeeeecCCC----------cc
Confidence 999999999999999999999999999999998742 223445899999999987544332 26
Q ss_pred CCCChhHHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Q 004995 602 NFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEE 679 (720)
Q Consensus 602 nF~~f~~a~~tLf~~~t~~~W~~im~~~~~~~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~~~~~ 679 (720)
+|.++|.|++.....||+-|+.|.. ......-...+.+.+..++.+.|.|.+|+.||...|..+.+.+++.
T Consensus 390 ~F~SIPdaFWwavVTMTTVGYGDm~-------P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte~ee~~ 460 (507)
T KOG1545|consen 390 HFSSIPDAFWWAVVTMTTVGYGDMV-------PVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQA 460 (507)
T ss_pred CCCcCcccceEEEEEEEeeccccce-------ecccCceehhhHHhhhhheEecccccEEEecccceeeccccchhhh
Confidence 8999999999888888888877652 2222334455777788888999999999999999887766655533
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.66 E-value=3.8e-16 Score=154.73 Aligned_cols=158 Identities=18% Similarity=0.327 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhccc--hhhhcccCccchhhHHHHHHHHHHHHhhhcCCcccccchhhhhhhhhhHHhhccc
Q 004995 137 VYEGITLVILIIHTFFPITYEGS--PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNI 214 (720)
Q Consensus 137 ~~e~~~l~if~~e~~~k~~~~g~--~~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~~~~~lR~~r~lR~lrli~~~ 214 (720)
++|.+|.++|++|+++|.++.|+ +.|++++||++|+++++.+.++.+.............+.+|++|.+|++|+++..
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~ 80 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRF 80 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeecccccccccccc
Confidence 36999999999999999999998 7899999999999999998877765532110001136788899999999999999
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----------------------------------c
Q 004995 215 RQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ-----------------------------------D 259 (720)
Q Consensus 215 ~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~-----------------------------------d 259 (720)
+.+++...++.++++.+..++++++++++.||++|+++|++... +
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~ 160 (200)
T PF00520_consen 81 RSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGE 160 (200)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccC
Confidence 99999999999999999999999999999999999999998631 7
Q ss_pred cchhhhcc-----CcchhHHHHHHHHHHHHHHHHHHHHHH
Q 004995 260 VWIPAYKA-----SRWYCLFFVLYVLIGVYFVTNLILAVV 294 (720)
Q Consensus 260 ~w~p~~~~-----~~~~~ifFi~~i~ig~~~~lnL~lavi 294 (720)
+|.+.+.. ++...+||++|+++++++++|+++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 161 GWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 77766654 888899999999999999999999986
No 10
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.59 E-value=8.5e-14 Score=148.92 Aligned_cols=170 Identities=13% Similarity=0.132 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhccch-hhhcccCccchhhHHHHHHHHHHHHhhhc------CCcccccchhhhhhhhhhHH
Q 004995 137 VYEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYL------SPIAFNFLPLRIAPYIRVVF 209 (720)
Q Consensus 137 ~~e~~~l~if~~e~~~k~~~~g~~-~y~~~~wn~~d~~v~v~~~i~~i~~~~~~------~~~~~~~~~lR~~r~lR~lr 209 (720)
++|.+|.++|++|.++|....+.+ .|+|+|-|++|++.++...+++.+..... ...+..++++|+.|++|++|
T Consensus 244 ~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~K 323 (477)
T KOG3713|consen 244 YVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFK 323 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 369999999999999999887765 79999999999999999999998876542 11113467888889999999
Q ss_pred hhccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc----------------------ccchhhhcc
Q 004995 210 FILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ----------------------DVWIPAYKA 267 (720)
Q Consensus 210 li~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~----------------------d~w~p~~~~ 267 (720)
+-+++.++|.+..++++|-++++.+++++..-+.+||.+.+.+-++... .++.|.-..
T Consensus 324 LaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~ 403 (477)
T KOG3713|consen 324 LARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVL 403 (477)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccc
Confidence 9999999999999999999999999999999999999999888776543 334454444
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 268 SRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMD 310 (720)
Q Consensus 268 ~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~~~~~~~~~~ 310 (720)
+...+ +--+++..+++.|.+.+|+|||.+...++.++..
T Consensus 404 Gklva----s~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~ 442 (477)
T KOG3713|consen 404 GKLVA----SLCILCGVLVLALPITIIVNNFSMYYSELKAREK 442 (477)
T ss_pred hHHHH----HHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHH
Confidence 44444 4445577889999999999999998877655443
No 11
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.55 E-value=1.9e-13 Score=158.90 Aligned_cols=233 Identities=14% Similarity=0.132 Sum_probs=156.6
Q ss_pred HHHHHHhHHHHhcCCCCCc--------hhc-ccCChhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccCCCCcc
Q 004995 44 YQKAAALVDLAEDGIGLPE--------EIL-DRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTY 114 (720)
Q Consensus 44 ~~~a~~~v~~a~~~r~~~~--------~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~ll~l~~~e~p~~~~~~~~~~~ 114 (720)
-.-|++.+++-++|+++.. |.. ++|+ +++|..+.+ .+|-|..-.. .
T Consensus 1100 a~eA~~~L~~LKdnlWIDr~~TRAVFVEFTVYNAN-------------------VNLFSvVtL-LfEF~~TGGV-----~ 1154 (1634)
T PLN03223 1100 AAEAQTWLDYMIYGLMIDDVKTRKVTAQVVVYNAE-------------------LGYFGNVMV-FFEFTDGGKI-----E 1154 (1634)
T ss_pred HHHHHHHHHHHHhCCCcccccceeEEEEEEEEcCC-------------------CCeEEEEEE-EEEEcCCCce-----e
Confidence 4578889999999999988 544 3555 133333322 2466654211 1
Q ss_pred cCCCc-cc---cccCCCCCCchhHHHHHHHHHHHHH---HHHHHHhHhhcc-----chhhhcccCccchhhHHHHHHHHH
Q 004995 115 SCYDR-EY---YYLGQLPYLTGWESLVYEGITLVIL---IIHTFFPITYEG-----SPIFWKSTYTRLKVLCLLILVADF 182 (720)
Q Consensus 115 ~c~d~-~~---~~~~~~p~~~~~~~~~~e~~~l~if---~~e~~~k~~~~g-----~~~y~~~~wn~~d~~v~v~~~i~~ 182 (720)
|..+. .. .|.+... ...++.|+++++++ +++-+.++.-.+ ..+||+++||++|++++++++..+
T Consensus 1155 ~s~~IqTfRL~~Y~tt~D----yfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAI 1230 (1634)
T PLN03223 1155 VTHRLNTIRVELYETYED----WVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATI 1230 (1634)
T ss_pred eeeeEEEEEEEEeccccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHH
Confidence 11110 01 1111111 23345566665544 455555544332 368999999999999999999888
Q ss_pred HHHhhhc-------------------CC----------cc-----cccc-----------------hhhhhhhhhhHHhh
Q 004995 183 LVYGLYL-------------------SP----------IA-----FNFL-----------------PLRIAPYIRVVFFI 211 (720)
Q Consensus 183 i~~~~~~-------------------~~----------~~-----~~~~-----------------~lR~~r~lR~lrli 211 (720)
+++.... +. +. .... .+-.++.+|++|++
T Consensus 1231 vLYFvf~~~~astf~~dIrynIYK~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLL 1310 (1634)
T PLN03223 1231 MMWFVFSWSYARAFEPDIHYDIYKNLSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLM 1310 (1634)
T ss_pred HHHHHHHHHhhhhhcchhhhhhhhhhhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7643210 00 00 0000 01226778999999
Q ss_pred ccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc------------------ccc--hhhh-----c
Q 004995 212 LNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ------------------DVW--IPAY-----K 266 (720)
Q Consensus 212 ~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~------------------d~w--~p~~-----~ 266 (720)
+..+.++.+..++.++.|+++.++++++++++.||++|+.+||...+ |.+ .... .
T Consensus 1311 RFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~ve~FSTf~sSL~TLFqMLLGDfdYF~eDLk~l~e~ 1390 (1634)
T PLN03223 1311 DFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNASVHFSDMTDSINSLFENLLGDITYFNEDLKNLTGL 1390 (1634)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhcCHHHHHHHHHHHHHcCchHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999997654 222 1111 1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 267 ASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 305 (720)
Q Consensus 267 ~~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~~~~~ 305 (720)
...+..+||++|+++..|+++|||+|+|.++|++...+.
T Consensus 1391 nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223 1391 QFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKANA 1429 (1634)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345688999999999999999999999999999876553
No 12
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.50 E-value=4.2e-13 Score=149.62 Aligned_cols=189 Identities=19% Similarity=0.304 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhcccccchhHHHHHHHHHHHHHhhcC------------CCCccccchh-----
Q 004995 455 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS------------PNGQTFLSNG----- 517 (720)
Q Consensus 455 ~~~~~~f~~iF~lE~~lKi~a~G~~~y~~~~wN~fD~~ivi~~~i~~i~~~~~------------~~~~~~~~~~----- 517 (720)
+.+-.++.++|+...+.|+...| ++|+++.||++|++++++++...++.... .+...+.+-.
T Consensus 214 ~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~ 292 (425)
T PF08016_consen 214 EILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQW 292 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHH
Confidence 45567788899999999999999 79999999999999988777654432110 1111111100
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCc
Q 004995 518 -----EWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETD 592 (720)
Q Consensus 518 -----~~~r~l~~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~ 592 (720)
...-++-.+-.+|++|+++..+++..+..|+..+.+.++.++.++++++..||.+|.-+||...
T Consensus 293 ~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~----------- 361 (425)
T PF08016_consen 293 DQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS----------- 361 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----------
Confidence 1222345567789999999999999999999999999999999999999999999999999763
Q ss_pred cccccccccCCCChhHHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004995 593 LADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 667 (720)
Q Consensus 593 ~~~~~y~~~nF~~f~~a~~tLf~~~t~~~W~~im~~~~~~~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~ 667 (720)
.+|.|+..|+.++++++.++.=.+ -....+...+.+||++|.++..++++|+++|++.++|.+
T Consensus 362 --------~~f~s~~~s~~tl~~~l~g~~~~~----~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 362 --------EDFSSFSSSLVTLFRMLLGDFDYD----ELYQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred --------cccCCHHHHHHHHHHHhcCCCchh----hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 479999999999999998752111 122234466899999999999999999999999999975
No 13
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.49 E-value=5.5e-13 Score=154.88 Aligned_cols=199 Identities=17% Similarity=0.304 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhcccccchhHHHHHHHHHHHHHhhcC-------------CCCccccc-----
Q 004995 454 WQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS-------------PNGQTFLS----- 515 (720)
Q Consensus 454 l~~~~~~f~~iF~lE~~lKi~a~G~~~y~~~~wN~fD~~ivi~~~i~~i~~~~~-------------~~~~~~~~----- 515 (720)
.+++-++|.++|+++.+.++.-.+.+.|+++.||+.|+.++.++++..++.... .+...+.+
T Consensus 468 ~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a 547 (798)
T KOG3599|consen 468 CEVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVA 547 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHH
Confidence 356778899999999999999888889999999999999999888766553221 11111111
Q ss_pred hhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCC
Q 004995 516 NGE-----WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEE 590 (720)
Q Consensus 516 ~~~-----~~r~l~~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~ 590 (720)
.++ ..-++-.+-.+|++|+++.++.++.+..|+.++.++++.+++..+++++.||.+|..+||...
T Consensus 548 ~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v--------- 618 (798)
T KOG3599|consen 548 QWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV--------- 618 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---------
Confidence 111 122344566789999999999999999999999999999999999999999999999999975
Q ss_pred CccccccccccCCCChhHHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004995 591 TDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEME 670 (720)
Q Consensus 591 ~~~~~~~y~~~nF~~f~~a~~tLf~~~t~~~W~~im~~~~~~~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~ 670 (720)
.||.||.+|+.|++..+.|+ +-.......+...+.+||.++.+++.++++|||+|+|.+.|.+.++
T Consensus 619 ----------~~f~~f~~s~~t~~~~~~G~----~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~ 684 (798)
T KOG3599|consen 619 ----------SDFRTFVASIVTLLRYILGD----FCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKA 684 (798)
T ss_pred ----------CChHHHHHHHHHHHHHHhcc----CCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Confidence 48999999999999999882 2222223344456889999999999999999999999999999987
Q ss_pred Hhhhh
Q 004995 671 LESSE 675 (720)
Q Consensus 671 ~~~~~ 675 (720)
..+++
T Consensus 685 ~~~~~ 689 (798)
T KOG3599|consen 685 DLAKE 689 (798)
T ss_pred HHhhc
Confidence 76663
No 14
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.37 E-value=3.6e-15 Score=152.28 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=179.9
Q ss_pred chHHHHHHhccccc-------hHHHHHHHHHHHHHHHHHhhcccccccch----------hHHHHHHHHHHHHHHHHHHH
Q 004995 407 SPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQESS----------LQSVWQEVEFVFGWIYVLEM 469 (720)
Q Consensus 407 ~~~r~~~~~iv~~~-------~f~~~i~~iilln~v~l~~~~~~~~~~~~----------~~~~l~~~~~~f~~iF~lE~ 469 (720)
..+|+++++-.++| .|.|+.-++|.++++.-.+|+.+....+. +...+-.++..|+.||+.|.
T Consensus 165 ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EY 244 (632)
T KOG4390|consen 165 LSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEY 244 (632)
T ss_pred chHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHH
Confidence 46788999888876 48888999999999999898865433221 11233457889999999999
Q ss_pred HHHHhhccc-chhhcccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 470 ALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATF 548 (720)
Q Consensus 470 ~lKi~a~G~-~~y~~~~wN~fD~~ivi~~~i~~i~~~~~~~~~~~~~~~~~~r~l~~lR~lR~lrli~~~~~lr~l~~tl 548 (720)
+||+++..- .+|.|+...++|.+.+....|++++.-...-+ +..-.+|++|++|++|.-++.+++|.+..|+
T Consensus 245 lLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVS-------GaFVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T KOG4390|consen 245 LLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVS-------GAFVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCcccc-------ceeEEEEeeeeeeeeeecccccccchhhhhH
Confidence 999997753 47889999999999888777776553222111 1123478899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCChhHHHHHHHHHHhhcCHHHHHHH
Q 004995 549 LTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQS 628 (720)
Q Consensus 549 ~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~~~t~~~W~~im~~ 628 (720)
..+...+.-++.-+.+.+.+||.+...-=+|.. ..+|.++|.|++-....||+-|+.+..-
T Consensus 318 KSCASELGFLlFSLtMAIIIFATvMfYAEKg~~------------------at~FTsIPaaFWYTIVTmTTLGYGDMVp- 378 (632)
T KOG4390|consen 318 KSCASELGFLLFSLTMAIIIFATVMFYAEKGSS------------------ATKFTSIPAAFWYTIVTMTTLGYGDMVP- 378 (632)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccc------------------ccccccCcHhHhhheeeeeeccccccch-
Confidence 999999887777777777788876433222221 3689999999998888888888776542
Q ss_pred HHhhhCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 004995 629 YKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSE 675 (720)
Q Consensus 629 ~~~~~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~ 675 (720)
+..+.-.|.+.+-++.++++.|+|.+|+.||+..|..++..
T Consensus 379 ------~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQRA 419 (632)
T KOG4390|consen 379 ------STIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRA 419 (632)
T ss_pred ------HHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhhhhh
Confidence 34455667777888888999999999999999998765444
No 15
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.20 E-value=2e-10 Score=128.18 Aligned_cols=159 Identities=21% Similarity=0.347 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhHhhccchhhhcccCccchhhHHHHHHHHHHHHhhhcC------------Cccc-ccc----------
Q 004995 141 ITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLS------------PIAF-NFL---------- 197 (720)
Q Consensus 141 ~~l~if~~e~~~k~~~~g~~~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~------------~~~~-~~~---------- 197 (720)
++++.|+...+.|+...| ++|++++||++|+++++++++.+++...... +..+ +..
T Consensus 219 ~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~~~ 297 (425)
T PF08016_consen 219 LFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWDQLYR 297 (425)
T ss_pred HHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHHH
Confidence 345555677777777778 6799999999999999888887765543210 0000 000
Q ss_pred ----hhhhhhhhhhHHhhccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc---------------
Q 004995 198 ----PLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ--------------- 258 (720)
Q Consensus 198 ----~lR~~r~lR~lrli~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~--------------- 258 (720)
.+-.+-.+|.+|+++..+.+..+.+++.++.++++..+++++++++.||..|+.+||....
T Consensus 298 ~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~~f~s~~~s~~tl~~~ 377 (425)
T PF08016_consen 298 YLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSEDFSSFSSSLVTLFRM 377 (425)
T ss_pred HHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCHHHHHHHHHHH
Confidence 0111567888889999999999999999999999999999999999999999999997653
Q ss_pred ----ccchhhhcc-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 259 ----DVWIPAYKA-SRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 300 (720)
Q Consensus 259 ----d~w~p~~~~-~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~ 300 (720)
.++.+.... .....+||++|+++..++++|+++|++.++|++
T Consensus 378 l~g~~~~~~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 378 LLGDFDYDELYQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred hcCCCchhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112223333 345569999999999999999999999999975
No 16
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.20 E-value=4.7e-10 Score=130.77 Aligned_cols=167 Identities=15% Similarity=0.201 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHhHhhccchhhhcccCccchhhHHHHHHHHHHHHhhhcCCcccccc---------------------h-
Q 004995 141 ITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFL---------------------P- 198 (720)
Q Consensus 141 ~~l~if~~e~~~k~~~~g~~~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~~~~---------------------~- 198 (720)
++.+.|+++-..++.-.+...|++++||++|++++.++++.+++.....+....... .
T Consensus 474 l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~ 553 (798)
T KOG3599|consen 474 LFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAA 553 (798)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHH
Confidence 344455666667766566767999999999999999999888776554211110000 0
Q ss_pred ------hhhhhhhhhHHhhccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccch----------
Q 004995 199 ------LRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQDVWI---------- 262 (720)
Q Consensus 199 ------lR~~r~lR~lrli~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~d~w~---------- 262 (720)
+-.+-.+|.+++++..+.++..-+++.+++|+++.+++.++++++.||.+|+.+||....|.+.
T Consensus 554 ~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~~f~~f~~s~~t~~~ 633 (798)
T KOG3599|consen 554 RNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVSDFRTFVASIVTLLR 633 (798)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCChHHHHHHHHHHHH
Confidence 1115567888999999999999999999999999999999999999999999999987654332
Q ss_pred ---------hhhccCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 263 ---------PAYKASR-WYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS 307 (720)
Q Consensus 263 ---------p~~~~~~-~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~~~~~~~ 307 (720)
.....++ ...+||.+|++++.++++|||+|+|.+.|.+.+....+
T Consensus 634 ~~~G~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~~~ 688 (798)
T KOG3599|consen 634 YILGDFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADLAK 688 (798)
T ss_pred HHhccCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHhh
Confidence 1224554 45689999999999999999999999999887665433
No 17
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.19 E-value=3.1e-10 Score=135.75 Aligned_cols=219 Identities=13% Similarity=0.019 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhcccccchhHHHHHHHHHHHHHhhc-----CCC----------CccccchhhH
Q 004995 455 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLA-----SPN----------GQTFLSNGEW 519 (720)
Q Consensus 455 ~~~~~~f~~iF~lE~~lKi~a~G~~~y~~~~wN~fD~~ivi~~~i~~i~~~~-----~~~----------~~~~~~~~~~ 519 (720)
+.+.......+..+....++..|...|+++.||++|++.....+...+.... ... ..+.......
T Consensus 392 e~~~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 471 (743)
T TIGR00870 392 EMLIVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEAL 471 (743)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHH
Confidence 3444555666778888888889988999999999999654433332211100 000 0000001124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC-CCCcccccc
Q 004995 520 IRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIP-SLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKL-EETDLADDD 597 (720)
Q Consensus 520 ~r~l~~lR~lR~lrli~~~~~lr~l~~tl~~~~~-~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~-~~~~~~~~~ 597 (720)
+-+..++..+|++.+++.++.+-.+..++.+.+. .++.++.+++++++.||+....+|+.......... +++. ....
T Consensus 472 ~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 550 (743)
T TIGR00870 472 FAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHA-RSCE 550 (743)
T ss_pred HHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-cccc
Confidence 4556677788888888888888888889999999 99999999999999999999999976432110000 0000 0011
Q ss_pred ccccCCCChhHHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004995 598 YLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 677 (720)
Q Consensus 598 y~~~nF~~f~~a~~tLf~~~t~~~W~~im~~~~~~~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 677 (720)
.....|.++..++.++|..+.|++-. . +........++.++|++|.++++++++||+||++-++|++..+..+.+.+
T Consensus 551 ~~~~~f~~~~~s~~~lf~~~~G~~~~--~-~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk 627 (743)
T TIGR00870 551 KQGNAYSTLFETSQELFWAIIGLGDL--L-ANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWK 627 (743)
T ss_pred cccccccCHHHHHHHHHHHHcCCccc--c-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHH
Confidence 11368999999999999888886422 1 11112223568999999999999999999999999999998777665544
No 18
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.93 E-value=9.2e-09 Score=105.26 Aligned_cols=159 Identities=9% Similarity=0.067 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhccch-hhhcccCccchhhHHHHHHHHHHHHhhhcCCccc------c---cchhhhhhhhh
Q 004995 137 VYEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAF------N---FLPLRIAPYIR 206 (720)
Q Consensus 137 ~~e~~~l~if~~e~~~k~~~~g~~-~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~------~---~~~lR~~r~lR 206 (720)
++|..|.++|++|++++.++.+.+ .|+||..|++|++.++..++.+...+..-++.+. . ++++|..|++|
T Consensus 257 iVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFR 336 (507)
T KOG1545|consen 257 IVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFR 336 (507)
T ss_pred hHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhh
Confidence 579999999999999999999987 6999999999999999999998887764322211 1 34555566666
Q ss_pred hHHhhccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc------------------------ccch
Q 004995 207 VVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ------------------------DVWI 262 (720)
Q Consensus 207 ~lrli~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~------------------------d~w~ 262 (720)
++++-+++++++.+-++++.|+++++-+++++++-+++||. -..|+.... .+|.
T Consensus 337 IFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsS--avYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~ 414 (507)
T KOG1545|consen 337 IFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSS--AVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMV 414 (507)
T ss_pred heeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--eeeeeecCCCccCCCcCcccceEEEEEEEeeccccce
Confidence 66667789999999999999999987766666655555542 122333221 3334
Q ss_pred hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 263 PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQ 301 (720)
Q Consensus 263 p~~~~~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~ 301 (720)
|..-.+.... +..-+...+-+.|.+-||+.||.-.
T Consensus 415 P~TvgGKIVG----slCAiaGVLTiALPVPVIVsNFnyF 449 (507)
T KOG1545|consen 415 PVTVGGKIVG----SLCAIAGVLTIALPVPVIVSNFNYF 449 (507)
T ss_pred ecccCceehh----hHHhhhhheEecccccEEEecccce
Confidence 5444444433 2233445567788999999999643
No 19
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.2e-08 Score=109.87 Aligned_cols=242 Identities=14% Similarity=0.207 Sum_probs=154.6
Q ss_pred hHHHHHHhccccc------hHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccc---
Q 004995 408 PFSEKLKAFIRST------KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGF--- 478 (720)
Q Consensus 408 ~~r~~~~~iv~~~------~f~~~i~~iilln~v~l~~~~~~~~~~~~~~~~l~~~~~~f~~iF~lE~~lKi~a~G~--- 478 (720)
+.+.+++++.+.| .+..+++++++.++++-++.+..+.+ ......+.++|++..++|.+|+++|+++.|-
T Consensus 76 r~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~-~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r 154 (654)
T KOG1419|consen 76 RIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYE-KLASGILYILEIVMIVFFGLEFIVRLWSAGCCCR 154 (654)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4556677777754 24556666666666666665543322 2345678899999999999999999998873
Q ss_pred -------chhhcccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 479 -------ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTL 551 (720)
Q Consensus 479 -------~~y~~~~wN~fD~~ivi~~~i~~i~~~~~~~~~~~~~~~~~~r~l~~lR~lR~lrli~~~~~lr~l~~tl~~~ 551 (720)
-+|-+++..++|+++++.++..+.+ .+.++.+ ....+|-+|.+.++|++|+=++--.++.+.+.+..-
T Consensus 155 YrG~~GRLrFarkp~cvIDiivi~Asi~vl~~---g~qG~vf--atSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH 229 (654)
T KOG1419|consen 155 YRGWYGRLRFARKPFCVIDIIVIIASIAVLAA---GSQGNVF--ATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAH 229 (654)
T ss_pred cccceeeEEeecCCceEEEEeeeeeeeeEEEe---cCcccee--ehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhh
Confidence 2577899999999988877543322 2222222 334577778888888888877777888888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCChhHHHHHHHHHHhhcCHHHHHHHHHh
Q 004995 552 IPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKE 631 (720)
Q Consensus 552 ~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~~~t~~~W~~im~~~~~ 631 (720)
-..++....+-|+. ++|+..-+.+=.....+.. ....|.++..|++.-...+|+-| |.|
T Consensus 230 ~~ELiTt~YIGFL~-LIfsSflVYLaEKd~~~e~-------------~n~~F~TyADALWWG~ITltTIG-------YGD 288 (654)
T KOG1419|consen 230 SKELITTWYIGFLV-LIFSSFLVYLAEKDAQGEG-------------TNDEFPTYADALWWGVITLTTIG-------YGD 288 (654)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhccccccc-------------ccccchhHHHHHHhhheeEEeec-------cCC
Confidence 66665544443322 3344333333322211110 02479999999965433333333 555
Q ss_pred hhCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 004995 632 LTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 676 (720)
Q Consensus 632 ~~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~~ 676 (720)
.++..|-.-+..++.-+..+-+..++-+++-..|.-..+++..++
T Consensus 289 k~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQK 333 (654)
T KOG1419|consen 289 KTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQK 333 (654)
T ss_pred cCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHH
Confidence 666677666666666666677888999998888877665544443
No 20
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.74 E-value=1.3e-07 Score=107.54 Aligned_cols=214 Identities=14% Similarity=0.110 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHhhcccchhhcccccchhHHHHHHHHHHHHHhhc---C-C-------------CCccccchhhHHHH
Q 004995 460 VFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLA---S-P-------------NGQTFLSNGEWIRY 522 (720)
Q Consensus 460 ~f~~iF~lE~~lKi~a~G~~~y~~~~wN~fD~~ivi~~~i~~i~~~~---~-~-------------~~~~~~~~~~~~r~ 522 (720)
.-+.=++.|-+-.++..|++.|+++.||++|+....+.+...++... . . ...+.+-......+
T Consensus 392 ~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfAi 471 (822)
T KOG3609|consen 392 LWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFAI 471 (822)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHHH
Confidence 34445678888899999999999999999999987765554443211 0 0 01111112234456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccC
Q 004995 523 LLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFN 602 (720)
Q Consensus 523 l~~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~n 602 (720)
-.+|-.+|++-++..++.+--+.-++.+.+..+..+++++.++++.|++--.|++............+...... ..
T Consensus 472 A~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~----~~ 547 (822)
T KOG3609|consen 472 ANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTT----DS 547 (822)
T ss_pred HHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccc----cc
Confidence 67788888888888888888888889999999999999999999999987777776654321111111111111 26
Q ss_pred CCChhHHHHHHHHHHhh-cCHHHHHHHHHhhhCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004995 603 FNDYPNGMVTLFNLLVM-GNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 677 (720)
Q Consensus 603 F~~f~~a~~tLf~~~t~-~~W~~im~~~~~~~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 677 (720)
|.++..+.-|||=-..| -+=..++..+...-...++.+.|.+|+++..++++||.||.+-++|++..+.+.-|-+
T Consensus 548 fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWK 623 (822)
T KOG3609|consen 548 FSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWK 623 (822)
T ss_pred cccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHH
Confidence 88888888887733321 1100011111111113568899999999999999999999999999998777666554
No 21
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.64 E-value=1.4e-09 Score=111.80 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHhHhhccch-hhhcccCccchhhHHHHHHHHHHHHhhhcCCcccccchhhhhhhhhhHHhhccchh
Q 004995 138 YEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQ 216 (720)
Q Consensus 138 ~e~~~l~if~~e~~~k~~~~g~~-~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~~~~~lR~~r~lR~lrli~~~~~ 216 (720)
+|..|+++|+.|.+++.++.+.+ +|.|+...++|++.++...+.+++.-. .......-.+|++|++|.+++-+.+.+
T Consensus 232 lDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N--~DVSGaFVTLRVFRVFRIFKFSRHSQG 309 (632)
T KOG4390|consen 232 LDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDN--EDVSGAFVTLRVFRVFRIFKFSRHSQG 309 (632)
T ss_pred ecceeEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCC--ccccceeEEEEeeeeeeeeeecccccc
Confidence 49999999999999999887765 789999999999999988887765522 122224567899999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--------ccchhhh----------ccCcchhHHHHHH
Q 004995 217 LRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ--------DVWIPAY----------KASRWYCLFFVLY 278 (720)
Q Consensus 217 lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~--------d~w~p~~----------~~~~~~~ifFi~~ 278 (720)
+|.+-.+++.+..+++.+++-+...+++||.+-++--+|... .-|..+. ..+.++.=-|-..
T Consensus 310 LRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsi 389 (632)
T KOG4390|consen 310 LRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSI 389 (632)
T ss_pred cchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhh
Confidence 999999999999999988888888888888776665555432 3343221 1122222233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 279 VLIGVYFVTNLILAVVYDSFKSQL 302 (720)
Q Consensus 279 i~ig~~~~lnL~lavi~~~f~~~~ 302 (720)
.-+...+++.|.+-||+.||+...
T Consensus 390 CSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 390 CSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred hcccceEEEeccccEEEechhHHH
Confidence 444556778899999999998754
No 22
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.56 E-value=4e-06 Score=100.56 Aligned_cols=168 Identities=12% Similarity=0.078 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHhHhhccchhhhcccCccchhhHHHHHHHHHHHHhh---hcCCc---------cc--------ccch
Q 004995 139 EGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGL---YLSPI---------AF--------NFLP 198 (720)
Q Consensus 139 e~~~l~if~~e~~~k~~~~g~~~y~~~~wn~~d~~v~v~~~i~~i~~~~---~~~~~---------~~--------~~~~ 198 (720)
.......+.++-...++..|...|+++.||++|++.+...++.++.... ..... .. ....
T Consensus 395 ~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~ 474 (743)
T TIGR00870 395 IVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAF 474 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Confidence 3444555666666677777888899999999999665444443322111 00000 00 0112
Q ss_pred hhhhhhhhhHHhhccchhHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcccCc------------------c
Q 004995 199 LRIAPYIRVVFFILNIRQLRDTLFVLAGMLG-TYLNVLALGLLFLLFSSWLAYVIFEDTVQ------------------D 259 (720)
Q Consensus 199 lR~~r~lR~lrli~~~~~lr~~~~~l~~~l~-~i~~v~~l~~~~~~~fai~g~~lF~~~~~------------------d 259 (720)
.-++..+|.+.+.+.++.+--...++.+++. .++..+++++++++-||+-..++|+.... .
T Consensus 475 ~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (743)
T TIGR00870 475 ALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGN 554 (743)
T ss_pred HHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccc
Confidence 2335667777777777777778888888999 99999999999999999999999863211 0
Q ss_pred cch-------------------h---hhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 260 VWI-------------------P---AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV 306 (720)
Q Consensus 260 ~w~-------------------p---~~~~~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~~~~~~ 306 (720)
.+. + ......+..++|++|+++.+++++||++|.+.++|++..+++.
T Consensus 555 ~f~~~~~s~~~lf~~~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~ 623 (743)
T TIGR00870 555 AYSTLFETSQELFWAIIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDAD 623 (743)
T ss_pred cccCHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH
Confidence 000 0 0112455678899999999999999999999999998766543
No 23
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.10 E-value=8.1e-05 Score=90.19 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhc------c---------cchhhccc
Q 004995 421 KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSY------G---------FENYWRDG 485 (720)
Q Consensus 421 ~f~~~i~~iilln~v~l~~~~~~~~~~~~~~~~l~~~~~~f~~iF~lE~~lKi~a~------G---------~~~y~~~~ 485 (720)
.|+.++.++++.+++.+-++..... ......+.+++.++.++|.+|++++.... | .++|++ .
T Consensus 63 ~Wd~~~~~~~~y~~~~~p~~~~F~~--~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~ 139 (823)
T PLN03192 63 WWETLMVVLVAYSAWVYPFEVAFLN--ASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-T 139 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeC--CCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-H
Confidence 6788888888888887766554321 11122466789999999999999998632 1 256775 4
Q ss_pred ccchhHHHHHHH
Q 004995 486 QNRFDFLVTWVI 497 (720)
Q Consensus 486 wN~fD~~ivi~~ 497 (720)
|-++|++.++..
T Consensus 140 ~f~~Dlis~lP~ 151 (823)
T PLN03192 140 WFLMDVASTIPF 151 (823)
T ss_pred hHHHHHHHHhHH
Confidence 789999876543
No 24
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.0013 Score=71.91 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcc----------chhhhcccCccchhhHHHHHHHHHHHHhhhcCCccc---ccchhhh
Q 004995 135 SLVYEGITLVILIIHTFFPITYEG----------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAF---NFLPLRI 201 (720)
Q Consensus 135 ~~~~e~~~l~if~~e~~~k~~~~g----------~~~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~---~~~~lR~ 201 (720)
.+++|++.+++|.+|+++++...| .-.|-++|..++|+++++.+++-+.+. . .+..+ .++.+|.
T Consensus 127 L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g-~--qG~vfatSalrslRF 203 (654)
T KOG1419|consen 127 LYILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAG-S--QGNVFATSALRSLRF 203 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEec-C--ccceeehhhhhhhHH
Confidence 456899999999999999988543 346899999999999888875422211 0 01111 3455555
Q ss_pred hhhhhhHHhhccc
Q 004995 202 APYIRVVFFILNI 214 (720)
Q Consensus 202 ~r~lR~lrli~~~ 214 (720)
+.+||.+|+=+.-
T Consensus 204 lQILRmlr~DRrg 216 (654)
T KOG1419|consen 204 LQILRMLRMDRRG 216 (654)
T ss_pred HHHHHHHHhhccC
Confidence 6666655555443
No 25
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.53 E-value=0.003 Score=72.84 Aligned_cols=168 Identities=16% Similarity=0.214 Sum_probs=115.0
Q ss_pred HHHHH---HHHHHHHHHhHhhccchhhhcccCccchhhHHHHHHHHHHHHhhh---cCCcc-----------cc------
Q 004995 139 EGITL---VILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLY---LSPIA-----------FN------ 195 (720)
Q Consensus 139 e~~~l---~if~~e~~~k~~~~g~~~y~~~~wn~~d~~v~v~~~i~~i~~~~~---~~~~~-----------~~------ 195 (720)
|.+.+ +-++.+-+..++..|...|+++-||++|++.+.+.+..++.-... .+... ..
T Consensus 387 E~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E 466 (822)
T KOG3609|consen 387 EILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAE 466 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHH
Confidence 54443 334566677778899999999999999999988887777654321 00000 00
Q ss_pred --cchhhhhhhhhhHHhhccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--------------c
Q 004995 196 --FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ--------------D 259 (720)
Q Consensus 196 --~~~lR~~r~lR~lrli~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~--------------d 259 (720)
...--++-.+|.+.+++..+.+--+--++-+++..+...++++.++++-|++--.+++.-..+ +
T Consensus 467 ~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~~ 546 (822)
T KOG3609|consen 467 GLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTTD 546 (822)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhcccccccccccc
Confidence 111234677788888887777777777788888999998888888888888766666643211 1
Q ss_pred cchhh-----------------------h---ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 260 VWIPA-----------------------Y---KASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV 306 (720)
Q Consensus 260 ~w~p~-----------------------~---~~~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~~~~~~ 306 (720)
.+.+. | -...+..+-|.+|.++....++||++|.+.++|++....+-
T Consensus 547 ~fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~AD 619 (822)
T KOG3609|consen 547 SFSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDAD 619 (822)
T ss_pred ccccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcch
Confidence 12111 1 12334456688888888999999999999999998776543
No 26
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.42 E-value=0.0061 Score=70.02 Aligned_cols=118 Identities=15% Similarity=0.245 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCChhHHHHHHHHHHhhcCHHHHHHHHH
Q 004995 551 LIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYK 630 (720)
Q Consensus 551 ~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~~~t~~~W~~im~~~~ 630 (720)
....++.++.+..++++-||..-.-+|.+-....++..+. ...+.-..-.++|+.+++++|+.+.+ |.++.
T Consensus 539 I~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~---~~~~~m~~~~ds~~~~~l~lf~ftig------~~dl~ 609 (782)
T KOG3676|consen 539 IFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKN---VESNPMCNPYDSFSTFLLTLFEFTIG------MGDLE 609 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc---ccccccCChhhHHHHHHHHHHHHhhh------hhhhh
Confidence 4568899999999999999999999998866543222111 11111123456689999999998875 33443
Q ss_pred hhhCC---ceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004995 631 ELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 677 (720)
Q Consensus 631 ~~~~~---~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 677 (720)
...+. ....+-|++|.++..++++||.||.+-|++.+..++.+.+..
T Consensus 610 ~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk 659 (782)
T KOG3676|consen 610 ACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWK 659 (782)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHH
Confidence 33332 347889999999999999999999999999998777655443
No 27
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.38 E-value=0.0018 Score=73.91 Aligned_cols=178 Identities=12% Similarity=0.160 Sum_probs=118.8
Q ss_pred HHHHHHhhcccchhhcccccchhHHHHHHHHHHHHHhhcCCCCccccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 468 EMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGE--WIRYLLLARMLRLIRLLMHVQQYRGFV 545 (720)
Q Consensus 468 E~~lKi~a~G~~~y~~~~wN~fD~~ivi~~~i~~i~~~~~~~~~~~~~~~~--~~r~l~~lR~lR~lrli~~~~~lr~l~ 545 (720)
-.++.++... ++||.+.-|+.|.++...+++...-.+. +.+ ..++ .-.+.-.+-..+++-++++++.+...+
T Consensus 579 ~E~iQifqqk-~~Y~~~i~Nimew~iyts~li~v~~~~~---~~~--~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfv 652 (929)
T KOG0510|consen 579 RECIQIFQQK-RHYFMDIENIMEWFIYTSALITVYPLFF---EIT--AHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFV 652 (929)
T ss_pred HHHHHHHHHH-HHHHhhhHHHHHHHHHhhhhheeehhhh---hhH--HHHHHHHHHHHHHHHHHHHHHHHccCCccceeh
Confidence 3334444433 6899999999999988776654322111 011 1222 223344567788888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCChhHHHHHHHHHHhhcCHHH-
Q 004995 546 ATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQV- 624 (720)
Q Consensus 546 ~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~~~t~~~W~~- 624 (720)
..+.....+++..+.+..+++..|++--.-+|+.. ..|.|.+-|.+..|.+|.||+=..
T Consensus 653 vM~~~I~ktflk~f~vfs~lliaF~lsFYVll~~~--------------------~eFs~p~ms~l~t~~MMiGe~dft~ 712 (929)
T KOG0510|consen 653 VMLEVILKTFLKSFMVFSILLIAFGLSFYVLLNKS--------------------SEFSNPFMSKLETFVMMIGENDFTK 712 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhheeeecCC--------------------CCcCCCcchhhhhHHHhhccccccc
Confidence 77777777777776666666667776655556554 248899999999999999974332
Q ss_pred HHHHHHhhh----CCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004995 625 WMQSYKELT----GTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMEL 671 (720)
Q Consensus 625 im~~~~~~~----~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~ 671 (720)
.|+.-.... ....+.+-|++|.++..++++||.+|+-+.--+...+.
T Consensus 713 ~~~~~~~~~~~l~~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~ 763 (929)
T KOG0510|consen 713 VMFTEEFKRNSLAHPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKH 763 (929)
T ss_pred ccccchhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 222111111 12457889999999999999999999988766655443
No 28
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.0013 Score=69.70 Aligned_cols=131 Identities=18% Similarity=0.288 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCC
Q 004995 525 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN 604 (720)
Q Consensus 525 ~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~ 604 (720)
++-.+-++|-+..++....++.|+.+++|.++.+..-..+++.-|..-|.-.-|- ++.-|+
T Consensus 384 LLVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGP-------------------YHdKFr 444 (566)
T KOG3733|consen 384 LLVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGP-------------------YHDKFR 444 (566)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecc-------------------hHHhhh
Confidence 4556667777789999999999999999999988777666665555444333222 145688
Q ss_pred ChhHHHHHHHHHHhhcCHHHHHHHHHhhhCC---ceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 004995 605 DYPNGMVTLFNLLVMGNWQVWMQSYKELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSE 675 (720)
Q Consensus 605 ~f~~a~~tLf~~~t~~~W~~im~~~~~~~~~---~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~ 675 (720)
+...---.||.+..|++--...-. +..-++ .++.+|..+|+-+-.|++++||||+|.++|.....-.++.
T Consensus 445 sLntvsECLFSLINGDDMFaTFA~-mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~~qq~G 517 (566)
T KOG3733|consen 445 SLNTVSECLFSLINGDDMFATFAT-MQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKAYQQDG 517 (566)
T ss_pred hHHHHHHHHHHhhCchhHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhCC
Confidence 877777778888888765443211 222111 2389999999999999999999999999998876544443
No 29
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=96.94 E-value=0.067 Score=63.88 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----CCCC-CC------------CCccc
Q 004995 533 RLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNA-----GNAK-LE------------ETDLA 594 (720)
Q Consensus 533 rli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~-----~n~~-~~------------~~~~~ 594 (720)
-++.+=..+..++.++-+-.+++.--.++-+++.|.|+|+|...|.+..+- .|.. .+ ...+.
T Consensus 2400 DliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~tc~ 2479 (2706)
T KOG3533|consen 2400 DLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSETCP 2479 (2706)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCccccCC
Confidence 333444455556666666666666666666778899999999999986531 1110 00 00000
Q ss_pred cccc---------cccCCCChhHHHHHHHHHHhh---------cCHHHHHHHHHhhhC-CceeeeehhhhHHHHHHHHHH
Q 004995 595 DDDY---------LLFNFNDYPNGMVTLFNLLVM---------GNWQVWMQSYKELTG-TAWTLAYFVSFYLITVLLLLN 655 (720)
Q Consensus 595 ~~~y---------~~~nF~~f~~a~~tLf~~~t~---------~~W~~im~~~~~~~~-~~~~~iyFi~f~li~~~i~ln 655 (720)
..+. ....=+.--.|-=||+-|.++ +|-.+++..-..-.+ -.|-.+|=..|+++..+|++|
T Consensus 2480 ~enC~~~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIVLN 2559 (2706)
T KOG3533|consen 2480 SENCPGLQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIVLN 2559 (2706)
T ss_pred CCCCCCCCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 0000 001222334455555544433 222333211000000 123345777888889999999
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh
Q 004995 656 LVIAFVLEAFFAEMELESSEKC 677 (720)
Q Consensus 656 Lfvavi~e~F~~~~~~~~~~~~ 677 (720)
|+-|+|+++|..-..++.++++
T Consensus 2560 LIFGVIIDTFaDLRsEKqkKEe 2581 (2706)
T KOG3533|consen 2560 LIFGVIIDTFADLRSEKQKKEE 2581 (2706)
T ss_pred HHHHhhhhhHHHHHhhhhHHHH
Confidence 9999999999998776665555
No 30
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.88 E-value=0.015 Score=70.24 Aligned_cols=196 Identities=17% Similarity=0.202 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHhhcc-------cchhhcccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHH-HHHHHHHHHHH
Q 004995 460 VFGWIYVLEMALKIYSYG-------FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWI-RYLLLARMLRL 531 (720)
Q Consensus 460 ~f~~iF~lE~~lKi~a~G-------~~~y~~~~wN~fD~~ivi~~~i~~i~~~~~~~~~~~~~~~~~~-r~l~~lR~lR~ 531 (720)
+-+..+.+|.+=+++.-+ .+-||.+.||..|.+.+..-+++.++.+...... ..+.++ -+--++=.+|+
T Consensus 830 ~~iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~---~~GRvIl~~d~i~~t~rL 906 (1381)
T KOG3614|consen 830 AWIFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSI---YSGRVILCFDFILFTLRL 906 (1381)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccce---ecceeeeeehHHHHHHHH
Confidence 333446788887777432 2469999999999999888777776655442221 122221 12233445667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCChhHHHH
Q 004995 532 IRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMV 611 (720)
Q Consensus 532 lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~a~~ 611 (720)
+-++...+.+---+..+.+-++.++.+++++++.++.|++.=-. ..++.++. .+.=|++ .++
T Consensus 907 l~~f~V~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQa----Il~P~e~~-----------~w~l~R~---i~y 968 (1381)
T KOG3614|consen 907 LHYFTVSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQA----ILRPDEPR-----------HWWLFRN---IFY 968 (1381)
T ss_pred hhheeeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hcCCCCCc-----------hHHHHHH---HHH
Confidence 77777777777777777788888888888888888888765221 11111000 0011111 111
Q ss_pred HHHHHHhhcCHHHHHHHHHh-------------h-------hCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004995 612 TLFNLLVMGNWQVWMQSYKE-------------L-------TGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMEL 671 (720)
Q Consensus 612 tLf~~~t~~~W~~im~~~~~-------------~-------~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~ 671 (720)
-=+-++.|+-..+-++.+.. . .|++.+.+..+.|.++.+++++||.||+.-..|....+.
T Consensus 969 ~PYlmifGeV~a~eID~~~~e~~~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~ 1048 (1381)
T KOG3614|consen 969 WPYLMLFGEVPADEIDTCTCEKSFCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQEN 1048 (1381)
T ss_pred HHHHHHhccccHhhhhhhcccccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222334433333333321 1 123346777889999999999999999998888887665
Q ss_pred hhhhh
Q 004995 672 ESSEK 676 (720)
Q Consensus 672 ~~~~~ 676 (720)
...--
T Consensus 1049 sd~iW 1053 (1381)
T KOG3614|consen 1049 SDQIW 1053 (1381)
T ss_pred HHHHH
Confidence 55443
No 31
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.83 E-value=0.043 Score=63.15 Aligned_cols=146 Identities=10% Similarity=0.196 Sum_probs=102.7
Q ss_pred ccchhhhcccCccchhhHHHHHHHHHHHHhhhcCCcccc----cchhhh-hhhhhhHHhhccchhHHHHHHHHHHhhHHH
Q 004995 157 EGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFN----FLPLRI-APYIRVVFFILNIRQLRDTLFVLAGMLGTY 231 (720)
Q Consensus 157 ~g~~~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~~----~~~lR~-~r~lR~lrli~~~~~lr~~~~~l~~~l~~i 231 (720)
...+.|+-+.-|+++.++...+++...-+.. ..... ..++-+ +-.++.+.+++..+..-..+..+...++++
T Consensus 586 qqk~~Y~~~i~Nimew~iyts~li~v~~~~~---~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktf 662 (929)
T KOG0510|consen 586 QQKRHYFMDIENIMEWFIYTSALITVYPLFF---EITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTF 662 (929)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhhheeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHH
Confidence 3445699999999999888777663322111 00001 111211 456777888888888887777788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCc-----------------------ccchhhhc-----cCcchhHHHHHHHHHHH
Q 004995 232 LNVLALGLLFLLFSSWLAYVIFEDTVQ-----------------------DVWIPAYK-----ASRWYCLFFVLYVLIGV 283 (720)
Q Consensus 232 ~~v~~l~~~~~~~fai~g~~lF~~~~~-----------------------d~w~p~~~-----~~~~~~ifFi~~i~ig~ 283 (720)
+..+.++.++++.|++--+.+|+...+ +...+.+. ....+.+-|++|.++..
T Consensus 663 lk~f~vfs~lliaF~lsFYVll~~~~eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~Ifmt 742 (929)
T KOG0510|consen 663 LKSFMVFSILLIAFGLSFYVLLNKSSEFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTIFMT 742 (929)
T ss_pred HHHHHHHHHHHHHhhhhheeeecCCCCcCCCcchhhhhHHHhhcccccccccccchhhcCcccchHHHHHHHHHHHHHHH
Confidence 999999999999999988888886542 11123332 22345567999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004995 284 YFVTNLILAVVYDSFKSQLAKQ 305 (720)
Q Consensus 284 ~~~lnL~lavi~~~f~~~~~~~ 305 (720)
.++|||++|.-+.--++..++.
T Consensus 743 IvLMNLLiGLAV~DIq~vqk~A 764 (929)
T KOG0510|consen 743 IVLMNLLIGLAVGDIQGVQKHA 764 (929)
T ss_pred HHHHHHHhhhhhhhHHHHHHHH
Confidence 9999999999998877665543
No 32
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=96.54 E-value=0.059 Score=64.33 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004995 213 NIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT 256 (720)
Q Consensus 213 ~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~ 256 (720)
.-..+..+++++-+.-+.+.--++|-++++++|+|+|+.+|.+.
T Consensus 2404 rEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdD 2447 (2706)
T KOG3533|consen 2404 REETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDD 2447 (2706)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44566777777777777888888899999999999999999865
No 33
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.28 E-value=0.092 Score=61.39 Aligned_cols=96 Identities=15% Similarity=0.236 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-c----------cc----chhhcccccchhHHHHHHHHHHHHHhhcCCCCcc-ccc
Q 004995 452 SVWQEVEFVFGWIYVLEMALKIYS-Y----------GF----ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQT-FLS 515 (720)
Q Consensus 452 ~~l~~~~~~f~~iF~lE~~lKi~a-~----------G~----~~y~~~~wN~fD~~ivi~~~i~~i~~~~~~~~~~-~~~ 515 (720)
..+.+++.+.-++|+++++++... + .+ .+|++ .|-++|++.++.. +.++......... ...
T Consensus 117 ~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~--~~i~~~~~~~~~~~~~~ 193 (727)
T KOG0498|consen 117 APLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPF--DQIVVLVVIGSTSLALE 193 (727)
T ss_pred CceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcCh--hhheeeeeecccchhhh
Confidence 456678888899999999999873 2 11 47888 8999999876531 1111111100000 001
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 516 NGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLT 550 (720)
Q Consensus 516 ~~~~~r~l~~lR~lR~lrli~~~~~lr~l~~tl~~ 550 (720)
......++.+.|+.|+.|+++.++++.........
T Consensus 194 ~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~ 228 (727)
T KOG0498|consen 194 STILVGILLLQRLPRLRRVIPLFARLEKDTGFVYE 228 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 12356677888888888888888877766555553
No 34
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=96.24 E-value=0.71 Score=56.32 Aligned_cols=41 Identities=2% Similarity=0.157 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhc-----------c----chhhhcccCccchhhHHHHH
Q 004995 137 VYEGITLVILIIHTFFPITYE-----------G----SPIFWKSTYTRLKVLCLLIL 178 (720)
Q Consensus 137 ~~e~~~l~if~~e~~~k~~~~-----------g----~~~y~~~~wn~~d~~v~v~~ 178 (720)
++|.++-++|++|++++...- . .+.|+|. |-++|++.++..
T Consensus 96 ~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~ 151 (823)
T PLN03192 96 IADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPF 151 (823)
T ss_pred eHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHH
Confidence 359999999999999886421 1 1357754 889998766554
No 35
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.96 E-value=0.27 Score=59.88 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=101.7
Q ss_pred HHHHHHHhHhhccc-------hhhhcccCccchhhHHHHHHHHHHHHhhhcCCcccccch----hhhhhhhhhHHhhccc
Q 004995 146 LIIHTFFPITYEGS-------PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLP----LRIAPYIRVVFFILNI 214 (720)
Q Consensus 146 f~~e~~~k~~~~g~-------~~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~~~~~----lR~~r~lR~lrli~~~ 214 (720)
+++|.+=+++..+. +-||.+.||++|.+.+...++..+.-+... ..-...++ --++=.+|.+-.+..+
T Consensus 835 l~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~-~~~~~GRvIl~~d~i~~t~rLl~~f~V~ 913 (1381)
T KOG3614|consen 835 LFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPI-DSIYSGRVILCFDFILFTLRLLHYFTVS 913 (1381)
T ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCc-cceecceeeeeehHHHHHHHHhhheeec
Confidence 34666655554332 359999999999999988887665433210 00001111 1123345666666667
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------------------HHHhcccCc--------ccch-
Q 004995 215 RQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLA-----------------------YVIFEDTVQ--------DVWI- 262 (720)
Q Consensus 215 ~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g-----------------------~~lF~~~~~--------d~w~- 262 (720)
+.+---+..+.++++.+..+++++++.++-|++-= +++||.-.. +.|.
T Consensus 914 ~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQaIl~P~e~~~w~l~R~i~y~PYlmifGeV~a~eID~~~~e~~~~ 993 (1381)
T KOG3614|consen 914 KQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQAILRPDEPRHWWLFRNIFYWPYLMLFGEVPADEIDTCTCEKSFC 993 (1381)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHhccccHhhhhhhccccccc
Confidence 77777777788888998888888888888886431 223332221 2221
Q ss_pred --h-----------hhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 263 --P-----------AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 305 (720)
Q Consensus 263 --p-----------~~~~~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~~~~~ 305 (720)
| ...+++...+--++|+++.+.+++||++|+.-+.|.+..+++
T Consensus 994 ~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~s 1049 (1381)
T KOG3614|consen 994 GEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENS 1049 (1381)
T ss_pred CCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 1 113445555668899999999999999999999998776654
No 36
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.16 E-value=0.041 Score=43.87 Aligned_cols=64 Identities=30% Similarity=0.484 Sum_probs=48.7
Q ss_pred HHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHH
Q 004995 317 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 381 (720)
Q Consensus 317 l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l 381 (720)
++++|+.++.+++|.++.++.......+..... ++...+..+.++...|.+++|.++.+||...
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 578899999999999999987777665543221 1223345566799999999999999999765
No 37
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.45 E-value=6.4 Score=46.13 Aligned_cols=78 Identities=21% Similarity=0.412 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc-----------cc-----------------------hhhhccC---cc
Q 004995 228 LGTYLNVLALGLLFLLFSSWLAYVIFEDTVQD-----------VW-----------------------IPAYKAS---RW 270 (720)
Q Consensus 228 l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~d-----------~w-----------------------~p~~~~~---~~ 270 (720)
+..++..+++..+|++=||.--+.+|.+-.++ .+ .|...+. ..
T Consensus 540 ~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~ 619 (782)
T KOG3676|consen 540 FGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVL 619 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHH
Confidence 46788899999999999999999999864431 11 1122333 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 271 YCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 305 (720)
Q Consensus 271 ~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~~~~~ 305 (720)
.-+-|++|+++...+++||++|.+-|+|.+.-+++
T Consensus 620 ~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s 654 (782)
T KOG3676|consen 620 FKILFVAYMILVTILLLNMLIAMMGNTYETVAQES 654 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Confidence 34559999999999999999999999998776554
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=93.15 E-value=0.71 Score=39.16 Aligned_cols=75 Identities=21% Similarity=0.214 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhhh--cccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHHh
Q 004995 313 RRRTLGKAFNLIDN--YNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 387 (720)
Q Consensus 313 r~~~l~~af~~L~~--~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~~ 387 (720)
+.+.++++|..+++ +++|.++.++....++.........+.+..+...++...|.++++.++.++|..++....+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 34458899999999 7999999988777665421111112356778899999999999999999999887765543
No 39
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.25 E-value=0.56 Score=40.11 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhh-cccCcCCHHHHHHHHHH-HhhhcCCCCCCh-HHHHhHhhhccCCCcccCChhhHHHHHHHHH
Q 004995 315 RTLGKAFNLIDN-YNVGFLNKEQCIKLFEE-LNKYRTLPNISR-EEFELIFDELDDTHDFKINLDEFADLCNAIA 386 (720)
Q Consensus 315 ~~l~~af~~L~~-~~~~~l~~~~~~~~~~~-l~~~~~~~~~~~-~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~ 386 (720)
..+.++|+..+. ++++.++.++.+..++. +. ..++. ++.+.++..+|.++||.++-+||..+...+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 347889999999 99999999998777665 42 12455 7899999999999999999999987655443
No 40
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=92.09 E-value=0.84 Score=49.05 Aligned_cols=96 Identities=13% Similarity=0.272 Sum_probs=64.5
Q ss_pred hHHhhccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccc------------------Ccccchhhh---
Q 004995 207 VVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT------------------VQDVWIPAY--- 265 (720)
Q Consensus 207 ~lrli~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~------------------~~d~w~p~~--- 265 (720)
++|.+..+..--.++.++..++|+++..........+-|..-|...-|.. .+|+|...+
T Consensus 390 VIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGPYHdKFrsLntvsECLFSLINGDDMFaTFA~m 469 (566)
T KOG3733|consen 390 VIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGPYHDKFRSLNTVSECLFSLINGDDMFATFATM 469 (566)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecchHHhhhhHHHHHHHHHHhhCchhHHHHHHHH
Confidence 34455566777788889999999998876665555555544444333321 227776433
Q ss_pred -ccCcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 266 -KASRWYC----LFFVLYVLIGVYFVTNLILAVVYDSFKSQL 302 (720)
Q Consensus 266 -~~~~~~~----ifFi~~i~ig~~~~lnL~lavi~~~f~~~~ 302 (720)
..+.+.| +|..+|+-+-.|.+++||+|+|.++|...+
T Consensus 470 qqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK 511 (566)
T KOG3733|consen 470 QQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIK 511 (566)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 2333433 567777778889999999999999997543
No 41
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=90.70 E-value=1.8 Score=37.37 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHHh
Q 004995 314 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 387 (720)
Q Consensus 314 ~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~~ 387 (720)
...+.++|+.++++++|.++.++....++.. ..+.++...++...|.++++.++.+||..++..+..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 3467889999999999999998876665432 356778889999999999999999999987776553
No 42
>PRK10537 voltage-gated potassium channel; Provisional
Probab=89.81 E-value=4.4 Score=44.74 Aligned_cols=103 Identities=10% Similarity=0.120 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccc
Q 004995 521 RYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLL 600 (720)
Q Consensus 521 r~l~~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~ 600 (720)
+.++++-++++..++...+.+.....+... +. .++.+....+|+++|...+++...
T Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----l~--~~~~~~~l~~~~~~g~~~~~~~f~------------------ 163 (393)
T PRK10537 108 KFLIGYCIVLLVALLIYRRDFDRSSLAAGT----LF--AVISITSLLFYSTFGALYLGDGFS------------------ 163 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHccccC------------------
Confidence 445666677777777777666655322221 11 122234455788888887765321
Q ss_pred cCCCChhHHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhhHHHHHHHH
Q 004995 601 FNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLL 653 (720)
Q Consensus 601 ~nF~~f~~a~~tLf~~~t~~~W~~im~~~~~~~~~~~~~iyFi~f~li~~~i~ 653 (720)
..+.++..|++..+..+|+-|..++. ..+..++++-++++++|..++
T Consensus 164 ~~~~s~~dA~y~svvt~tTvGyGdi~------p~t~~grl~~i~~ii~Gi~vf 210 (393)
T PRK10537 164 PPIESLSTAFYFSIVTMSTVGYGDIV------PVSESARLFTISVIILGITVF 210 (393)
T ss_pred cCCCCHHHHHHhhheeeecccCCCCC------CCCHHHHHHHHHHHHHHHHHH
Confidence 13567888887777777777666652 112345566666665554433
No 43
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=89.75 E-value=1.9 Score=37.08 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=53.3
Q ss_pred HHHHHHHHhhhh-cc-cCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHH
Q 004995 315 RTLGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 386 (720)
Q Consensus 315 ~~l~~af~~L~~-~~-~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~ 386 (720)
..+..+|+..+. ++ +|.++.++....+...-....-.+.+.++.+.++...|.++++.++.++|..++..++
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 347889999987 76 6999999877766541110001245677888999999999999999999988776544
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=89.64 E-value=1.6 Score=34.40 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=49.8
Q ss_pred HHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHHh
Q 004995 318 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 387 (720)
Q Consensus 318 ~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~~ 387 (720)
+++|..++++++|.++.++....+... ..+.++.+.++...+.++++.++.+||...+..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHH
Confidence 467888999999999988866655432 236777888999999999999999999887765543
No 45
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=89.60 E-value=0.86 Score=43.31 Aligned_cols=65 Identities=28% Similarity=0.502 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHH
Q 004995 313 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 382 (720)
Q Consensus 313 r~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~ 382 (720)
.+..++.||++.+.+++|.++.......++.+. .+++.++.+.++...+.+++|.++.++|.+.+
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg-----e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLG-----ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc-----ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 356789999999999999999988666555442 56789999999999999999999999997653
No 46
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=89.60 E-value=1.8 Score=36.86 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=52.9
Q ss_pred HHHHHHHhhh-hcccC-cCCHHHHHHHHHH-HhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHH
Q 004995 316 TLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 386 (720)
Q Consensus 316 ~l~~af~~L~-~~~~~-~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~ 386 (720)
.+.++|+..+ ++++| .++.++....++. +.... -...+.++.+.+...+|.+++|.++.+||..+...+.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4678999998 68899 5999998777665 11111 1335677899999999999999999999987765443
No 47
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=89.54 E-value=1.9 Score=37.07 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=50.9
Q ss_pred HHHHHHHhhh-hcccCc-CCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHH
Q 004995 316 TLGKAFNLID-NYNVGF-LNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 385 (720)
Q Consensus 316 ~l~~af~~L~-~~~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~ 385 (720)
.+.++|+.-+ +++++. ++.++....+..........+.+..+.+.+..++|.+++|.++.+||..+...+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3567788888 567874 999987777654211111123367789999999999999999999998876544
No 48
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=89.47 E-value=2.5 Score=36.21 Aligned_cols=70 Identities=23% Similarity=0.342 Sum_probs=53.1
Q ss_pred HHHHHHHHhhh-hcccC-cCCHHHHHHHHHH-HhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHH
Q 004995 315 RTLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 385 (720)
Q Consensus 315 ~~l~~af~~L~-~~~~~-~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~ 385 (720)
..++++|+..+ .++++ .++..+....++. +..... ...+.++.+.++...|.++++.++.++|..+...+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~-~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLD-AQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 34788999997 88999 4999988777654 322111 13467789999999999999999999998765443
No 49
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=86.44 E-value=4.9 Score=34.32 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=49.7
Q ss_pred HHHHHHHh-hhhcccC-cCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHH
Q 004995 316 TLGKAFNL-IDNYNVG-FLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 386 (720)
Q Consensus 316 ~l~~af~~-L~~~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~ 386 (720)
.+..+|+. .++++++ .+++++...++...-......+.++.+.+.++..+|.++||.++-+||..+...++
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 45677887 5566654 89998877766543110001234567888999999999999999999987655443
No 50
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.18 E-value=14 Score=43.65 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhHhh-----------ccc----hhhhcccCccchhhHHHH
Q 004995 138 YEGITLVILIIHTFFPITY-----------EGS----PIFWKSTYTRLKVLCLLI 177 (720)
Q Consensus 138 ~e~~~l~if~~e~~~k~~~-----------~g~----~~y~~~~wn~~d~~v~v~ 177 (720)
++.+.=++|+++++++... ..+ ..|+| .|=++|++.++.
T Consensus 122 ~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP 175 (727)
T KOG0498|consen 122 LDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLP 175 (727)
T ss_pred HHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcC
Confidence 5888888899999988641 112 25888 899999877554
No 51
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=85.85 E-value=3.8 Score=38.56 Aligned_cols=64 Identities=27% Similarity=0.455 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHH
Q 004995 314 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 382 (720)
Q Consensus 314 ~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~ 382 (720)
...+.+||++.+.+.+|.++....+.....+. +++++++...+..+.|.++++.++.+||..++
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg-----enltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELG-----ENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhC-----ccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 44578899999999999999988777777663 78999999999999999999999999997653
No 52
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=85.30 E-value=3.1 Score=31.30 Aligned_cols=60 Identities=30% Similarity=0.497 Sum_probs=47.4
Q ss_pred HHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHH
Q 004995 317 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 381 (720)
Q Consensus 317 l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l 381 (720)
+.++|...+.+.++.++.++.....+.+. +..+.+....++...+.++++.++.++|...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-----EGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 35678888888999999988776665442 5567778888999999999999999998654
No 53
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=84.44 E-value=2.6 Score=41.45 Aligned_cols=67 Identities=28% Similarity=0.506 Sum_probs=53.9
Q ss_pred HHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCC------CCCChHHHHhHhhhccCCCcccCChhhHHHHHH
Q 004995 317 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTL------PNISREEFELIFDELDDTHDFKINLDEFADLCN 383 (720)
Q Consensus 317 l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~------~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~ 383 (720)
+..+|++-+.+++|.+++.++.+.++.+...... +....+..+.+|..+|.++||.++.+||...+.
T Consensus 102 l~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 102 LKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred hhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 4467999999999999999998888877654332 223456778899999999999999999987654
No 54
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=83.71 E-value=3.9 Score=38.53 Aligned_cols=63 Identities=27% Similarity=0.477 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHH
Q 004995 314 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 381 (720)
Q Consensus 314 ~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l 381 (720)
...+++||++.+++++|+++.++..+.+..+. .+.+.++.+.+....|.+++|.++.++|...
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg-----~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~ 146 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLG-----EKLTDEECKEMIREVDVDGDGKVNFEEFVKM 146 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC-----CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHH
Confidence 45789999999999999999998777666553 4566889999999999999999988887654
No 55
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=83.00 E-value=2 Score=51.87 Aligned_cols=138 Identities=17% Similarity=0.309 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCCCC
Q 004995 526 ARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFND 605 (720)
Q Consensus 526 lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~ 605 (720)
+=...++-+..-++.+|.++.++....+.+.-.++++.++.|.|.+++.++|..-.+..++...+ + ..=|+
T Consensus 4790 ffaahlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~p-d--------mkcdd 4860 (5019)
T KOG2243|consen 4790 FFAAHLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEP-D--------MKCDD 4860 (5019)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCC-C--------ccchh
Confidence 34455666667778888888777777777766778888999999999999998755432221111 0 11222
Q ss_pred hhHHHHHHHHHHh----hcCHHHHHHHHHhhhC---CceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004995 606 YPNGMVTLFNLLV----MGNWQVWMQSYKELTG---TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 677 (720)
Q Consensus 606 f~~a~~tLf~~~t----~~~W~~im~~~~~~~~---~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 677 (720)
..... +|.+-+ +.|-.+-.. |..| ..+-.+|=|.|+++..+|++.++-++|+++|-+..+..++-++
T Consensus 4861 mltcy--lfhmyvgvragggigdeie---dpagd~yeiyriifditffffvivillaiiqgliidafgelrdqqeqvke 4934 (5019)
T KOG2243|consen 4861 MLTCY--LFHMYVGVRAGGGIGDEIE---DPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKE 4934 (5019)
T ss_pred hHHHH--hhheeeeeecCCccccccc---CCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHHHHHHh
Confidence 22211 122211 122222111 1122 1345677789999999999999999999999988776655544
No 56
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=82.94 E-value=4.7 Score=38.01 Aligned_cols=67 Identities=28% Similarity=0.385 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHH
Q 004995 314 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 385 (720)
Q Consensus 314 ~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~ 385 (720)
...++++|+..+++++|.++..+....++.+. .+.+..+...+.+..|.+++|.++.++|..++...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-----~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLG-----QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 34578999999999999999988777766653 34678889999999999999999999999876543
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=81.67 E-value=6.9 Score=35.25 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHH
Q 004995 312 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 382 (720)
Q Consensus 312 ~r~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~ 382 (720)
..+..+..+|..++.+++|.++.++..... ..........++...|.++||.|+.+||...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~---------l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR---------LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH---------ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 345568899999999999999998854332 11224556778899999999999999998764
No 58
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.64 E-value=0.96 Score=50.19 Aligned_cols=47 Identities=11% Similarity=0.287 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-hhhcccccchhHHHHHHHHH
Q 004995 453 VWQEVEFVFGWIYVLEMALKIYSYGFE-NYWRDGQNRFDFLVTWVIVI 499 (720)
Q Consensus 453 ~l~~~~~~f~~iF~lE~~lKi~a~G~~-~y~~~~wN~fD~~ivi~~~i 499 (720)
.-+-++..|.++|.+-..+|.+|..=+ =||-....+.|++.+..+++
T Consensus 163 ~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfv 210 (1103)
T KOG1420|consen 163 FTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFV 210 (1103)
T ss_pred hHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchhe
Confidence 335688999999999999999987532 24556666777776555543
No 59
>PTZ00183 centrin; Provisional
Probab=81.34 E-value=5.3 Score=37.41 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHH
Q 004995 315 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 382 (720)
Q Consensus 315 ~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~ 382 (720)
..+..+|+.++.+++|.++..+........ .+.++.++...++..++.+++|.++.++|..+.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-----~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKEL-----GETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 346788999999999999988766555433 245788889999999999999999999997654
No 60
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=80.97 E-value=2.7 Score=31.71 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=27.3
Q ss_pred CCCChHHHHhHhhhccCCCcccCChhhHHHHHHHH
Q 004995 351 PNISREEFELIFDELDDTHDFKINLDEFADLCNAI 385 (720)
Q Consensus 351 ~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~ 385 (720)
-+++.+....+|...|++++|.++.+||...|+.+
T Consensus 16 I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 16 IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp ----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 45678888999999999999999999999888764
No 61
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=80.36 E-value=7.2 Score=37.13 Aligned_cols=66 Identities=24% Similarity=0.430 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHH
Q 004995 315 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 386 (720)
Q Consensus 315 ~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~ 386 (720)
+.+.+||++++++++|.+++....+.++.+. -..+......+++..+. +.+.++.++|...+.+..
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-----~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLG-----FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-----CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 4578999999999999999988666655332 23567788899999999 889999999988776654
No 62
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=78.87 E-value=1.6 Score=28.78 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.2
Q ss_pred HHhHhhhccCCCcccCChhhHHHHHH
Q 004995 358 FELIFDELDDTHDFKINLDEFADLCN 383 (720)
Q Consensus 358 ~~~l~~~ld~~~~~~i~~~ef~~l~~ 383 (720)
.+.++...|++++|.|+.+||...+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 46688999999999999999987653
No 63
>PTZ00184 calmodulin; Provisional
Probab=78.35 E-value=7.1 Score=35.93 Aligned_cols=61 Identities=25% Similarity=0.429 Sum_probs=49.4
Q ss_pred HHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHH
Q 004995 316 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 381 (720)
Q Consensus 316 ~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l 381 (720)
.+..+|+..+.+++|.++.++..+.+... .+..+.++.+.++...|.++++.++.+||...
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHH-----CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 35677899999999999998876665543 24577888899999999999999999998764
No 64
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=76.84 E-value=13 Score=31.97 Aligned_cols=55 Identities=24% Similarity=0.445 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHH-HhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHH
Q 004995 331 FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 386 (720)
Q Consensus 331 ~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~ 386 (720)
.+++.+..++++. +..+-. .+.++...+.++..+|.++|+.++-.||..+...+.
T Consensus 23 tLsk~Elk~Ll~~Elp~~l~-~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 23 YLNRDDLQKLMEKEFSEFLK-NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred cCCHHHHHHHHHHHhHHHHc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4555555554432 222222 223667788899999999999999999987655443
No 65
>PTZ00184 calmodulin; Provisional
Probab=76.43 E-value=11 Score=34.52 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHH
Q 004995 315 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 383 (720)
Q Consensus 315 ~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~ 383 (720)
+.+.++|..++.++.|.++..+.......+. .+.+.++...++...|.+++|.++.++|.....
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 74 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLG-----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMA 74 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHH
Confidence 4577889999999999999998766554332 234467888999999999999999999976543
No 66
>PTZ00183 centrin; Provisional
Probab=73.92 E-value=14 Score=34.41 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHH
Q 004995 315 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 383 (720)
Q Consensus 315 ~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~ 383 (720)
+.+.++|..++.+++|.++..+....++.+. .+.+......++...|.++++.++.+||.....
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLG-----FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 4578889999999999999999777665442 234566788899999999999999999987543
No 67
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=73.84 E-value=25 Score=29.76 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=40.5
Q ss_pred ccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHH
Q 004995 328 NVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 386 (720)
Q Consensus 328 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~ 386 (720)
+++.++.++....+............+.++.+.++...|.+++|.++.++|..+...+.
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 45678888777666422111000123478899999999999999999999988765543
No 68
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=73.23 E-value=13 Score=40.46 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHH
Q 004995 313 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 380 (720)
Q Consensus 313 r~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~ 380 (720)
++..+.+-|+-+|.++++.++.++.+.-.+++ -.+++.++.++++...|++++..++.+||.+
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-----gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd 142 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-----GIQLSDEKAAKFFEHMDKDGKATIDLEEWRD 142 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHh-----CCccCHHHHHHHHHHhccCCCeeeccHHHHh
Confidence 44557778999999999999887755444443 2458999999999999999999999999976
No 69
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=72.27 E-value=7.1 Score=29.42 Aligned_cols=50 Identities=28% Similarity=0.491 Sum_probs=35.0
Q ss_pred cCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHH
Q 004995 329 VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 382 (720)
Q Consensus 329 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~ 382 (720)
+|.++.++....+..+ ..+..+.++...++...|.+++|.++.+||....
T Consensus 2 ~G~i~~~~~~~~l~~~----g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 2 DGKITREEFRRALSKL----GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSEEEHHHHHHHHHHT----TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred cCEECHHHHHHHHHHh----CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 3455555544433222 1122788899999999999999999999997653
No 70
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=71.68 E-value=30 Score=37.91 Aligned_cols=77 Identities=23% Similarity=0.289 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHH
Q 004995 309 MDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 386 (720)
Q Consensus 309 ~~~~r~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~ 386 (720)
.-.+-+..|...|+.+|.+..|.++-++.....+-+.++-. ..++..+...+-...|-++||.++.+||.+.+....
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~-~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMN-GAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcC-CCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 33445667888999999999999998887665555555433 457888888899999999999999999987665543
No 71
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.91 E-value=13 Score=41.69 Aligned_cols=66 Identities=8% Similarity=0.142 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhHhhccch-hhhcccCccchhhHHHHHHHHHHHHhhhcCCcccccchhhhhhhhhhHHhhccc
Q 004995 138 YEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNI 214 (720)
Q Consensus 138 ~e~~~l~if~~e~~~k~~~~g~~-~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~~~~~lR~~r~lR~lrli~~~ 214 (720)
+|+.|.++|.+-+.++.++..-+ -||-.-..++|++.+=.+++.+ +--+..-.+|.||.+|+++..
T Consensus 167 idlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsi-----------yl~r~wlglrflralrlmtvp 233 (1103)
T KOG1420|consen 167 IDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSI-----------YLNRSWLGLRFLRALRLMTVP 233 (1103)
T ss_pred hhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEE-----------EeccchHHHHHHHHHHhccHH
Confidence 47888888888777777765544 4556666666666555444422 112333446777777777543
No 72
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.43 E-value=1.7e+02 Score=32.86 Aligned_cols=47 Identities=21% Similarity=0.557 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh----hccc---------chhhcccccchhHHHHH
Q 004995 449 SLQSVWQEVEFVFGWIYVLEMALKIY----SYGF---------ENYWRDGQNRFDFLVTW 495 (720)
Q Consensus 449 ~~~~~l~~~~~~f~~iF~lE~~lKi~----a~G~---------~~y~~~~wN~fD~~ivi 495 (720)
.+-..|..+|+.+=.+|+++++++.- -.|. +.|+++.--.+|.+.++
T Consensus 26 ~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~li 85 (536)
T KOG0500|consen 26 SYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLI 85 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhc
Confidence 34567888999999999999998765 2353 56777766666766433
No 73
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=69.38 E-value=7.3 Score=47.52 Aligned_cols=91 Identities=14% Similarity=0.253 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc------------ccchhhh-----------------
Q 004995 215 RQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ------------DVWIPAY----------------- 265 (720)
Q Consensus 215 ~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~------------d~w~p~~----------------- 265 (720)
+.+|.++.++-..-+++.--..++..++++|+++++.+|+.-+. |+|+..|
T Consensus 4803 ktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdmkcddmltcylfhmyvgvragggigde 4882 (5019)
T KOG2243|consen 4803 KTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMLTCYLFHMYVGVRAGGGIGDE 4882 (5019)
T ss_pred HHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhhHHHHhhheeeeeecCCccccc
Confidence 34444444333333333334567788899999999999973221 5565443
Q ss_pred ------cc-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 266 ------KA-SRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 305 (720)
Q Consensus 266 ------~~-~~~~~ifFi~~i~ig~~~~lnL~lavi~~~f~~~~~~~ 305 (720)
+. ..+-.+|=|.|.++...+++.++-+.|++.|-+.+..+
T Consensus 4883 iedpagd~yeiyriifditffffvivillaiiqgliidafgelrdqq 4929 (5019)
T KOG2243|consen 4883 IEDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQ 4929 (5019)
T ss_pred ccCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHH
Confidence 11 12234566777777778899999999999998776554
No 74
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=68.56 E-value=41 Score=28.55 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=48.3
Q ss_pred HHHHHHhhhh-cc-cCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHH
Q 004995 317 LGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 386 (720)
Q Consensus 317 l~~af~~L~~-~~-~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~ 386 (720)
+.+.|+.-+. ++ ++.++.++..+.+..... .-.+.+.++.+.++..+|.+++|.++.+||..+...++
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~--lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELT--IGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 4455666555 34 788998887666543111 12456889999999999999999999999977655443
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=65.63 E-value=20 Score=31.65 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHH
Q 004995 314 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 385 (720)
Q Consensus 314 ~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~ 385 (720)
+......|+.+++ +++.++.++....+. ..+++.+....+|+..|.+++|.++.+||.-....+
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~-------~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFM-------KSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHH-------HTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHH-------HcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3445677888875 568899888766543 246788999999999999999999999997644433
No 76
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=65.25 E-value=14 Score=36.18 Aligned_cols=66 Identities=26% Similarity=0.411 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHH----HHhHhhhccCCCcccCChhhHHHHH
Q 004995 315 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREE----FELIFDELDDTHDFKINLDEFADLC 382 (720)
Q Consensus 315 ~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~----~~~l~~~ld~~~~~~i~~~ef~~l~ 382 (720)
.+++=||++.+.+++|.++.++....+..+-.... . .+.+. .+.++.+.|.++||+|+.+||.+..
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~-~-~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGEND-D-MSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCC-c-chHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 45677999999999999999987666555532211 1 12232 4456778899999999999997653
No 77
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=62.62 E-value=5.5 Score=25.19 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.5
Q ss_pred HhHhhhccCCCcccCChhhHHHH
Q 004995 359 ELIFDELDDTHDFKINLDEFADL 381 (720)
Q Consensus 359 ~~l~~~ld~~~~~~i~~~ef~~l 381 (720)
+..|...|.+++|.++.+||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 35678899999999999998764
No 78
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=55.50 E-value=33 Score=32.25 Aligned_cols=71 Identities=28% Similarity=0.402 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhc---------------------------CCCCCC-hHHHHhHhhhc
Q 004995 314 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYR---------------------------TLPNIS-REEFELIFDEL 365 (720)
Q Consensus 314 ~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~---------------------------~~~~~~-~~~~~~l~~~l 365 (720)
=+++..||++++.+.+|+++++.....+..+.+.. .+.... .+..-..|...
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~F 110 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTF 110 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 35678999999999999999988766555554321 000111 11222345567
Q ss_pred cCCCcccCChhhHHHHHHH
Q 004995 366 DDTHDFKINLDEFADLCNA 384 (720)
Q Consensus 366 d~~~~~~i~~~ef~~l~~~ 384 (720)
|++++|.|+.+.+.++.-.
T Consensus 111 D~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 111 DDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred CccCCCccCHHHHHHHHHH
Confidence 8888888888887776544
No 79
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=54.36 E-value=37 Score=37.85 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhh----cc---------chhhhcccCccchhhHHHHHHHHHHHHhhhcCCcccccchhhhh
Q 004995 136 LVYEGITLVILIIHTFFPITY----EG---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIA 202 (720)
Q Consensus 136 ~~~e~~~l~if~~e~~~k~~~----~g---------~~~y~~~~wn~~d~~v~v~~~i~~i~~~~~~~~~~~~~~~lR~~ 202 (720)
+.++++|=.+|+++++++... .| ++.|+++..-.+|++.++.. |++.... ......|..
T Consensus 32 l~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~--D~l~~~~------~~~~~~r~n 103 (536)
T KOG0500|consen 32 LPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPL--DLLLFKD------GSASLERLN 103 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcch--hHHhhcC------CcchHHHHH
Confidence 446999999999999987541 22 23577777777777665542 3332211 134556677
Q ss_pred hhhhhHHhhccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004995 203 PYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE 254 (720)
Q Consensus 203 r~lR~lrli~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~ 254 (720)
|.+|..|+...+.+... +.+.|.+..+..+...++++|=|-|...|-
T Consensus 104 Rllk~yRl~~F~~rTet-----rT~~Pn~fri~~lv~~~~ilfHWNaClYf~ 150 (536)
T KOG0500|consen 104 RLLKIYRLFEFFDRTET-----RTTYPNAFRISKLVHYCLILFHWNACLYFL 150 (536)
T ss_pred HHHHHHHHHHHHHHhcc-----ccCCchHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 77777776654433222 346688888888888888888777766553
No 80
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=53.52 E-value=11 Score=24.88 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHhHhhhccCCCcccCChhhHHHHHH
Q 004995 358 FELIFDELDDTHDFKINLDEFADLCN 383 (720)
Q Consensus 358 ~~~l~~~ld~~~~~~i~~~ef~~l~~ 383 (720)
...+|...|.+++|.|+.+||...+.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 35678899999999999999987654
No 81
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=52.73 E-value=45 Score=36.78 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHH
Q 004995 314 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 384 (720)
Q Consensus 314 ~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~ 384 (720)
+..++.+|.+.|.+++|.++.++... .+.+|..+|.++||.++.+||...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45678899999999999999987421 356899999999999999999887654
No 82
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=51.17 E-value=3.3 Score=42.36 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=21.2
Q ss_pred chHHHHHHhccccchHHHHHHHHH
Q 004995 407 SPFSEKLKAFIRSTKFGYMISIIL 430 (720)
Q Consensus 407 ~~~r~~~~~iv~~~~f~~~i~~ii 430 (720)
..+|+.|+++|+|+||+.+|+++|
T Consensus 216 ~~~R~~c~~iVeh~~FEtfIifmI 239 (239)
T PF06512_consen 216 WNLRKTCYRIVEHKWFETFIIFMI 239 (239)
T ss_pred HHHHhhheeeecccchhheeeeeC
Confidence 468999999999999999987764
No 83
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=50.34 E-value=93 Score=34.26 Aligned_cols=77 Identities=23% Similarity=0.379 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcC-----CCCC----------------------------------
Q 004995 313 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT-----LPNI---------------------------------- 353 (720)
Q Consensus 313 r~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~-----~~~~---------------------------------- 353 (720)
.+..|.++|+..|.++.|.++-.+|.+-++.+-...- .|++
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 3556788999999998888888777665555432110 0000
Q ss_pred ---ChHHHHhHhhhccCCCcccCChhhHHHHHHHHHhhh
Q 004995 354 ---SREEFELIFDELDDTHDFKINLDEFADLCNAIALRF 389 (720)
Q Consensus 354 ---~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~~~~ 389 (720)
.+...+.+|+.+|.+..|.++.+||.+.++.++...
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~ 580 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM 580 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc
Confidence 122355688889999999999999999888776543
No 84
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=49.36 E-value=31 Score=39.06 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cc------------chhhcccccchhHHHHH
Q 004995 453 VWQEVEFVFGWIYVLEMALKIYSY--GF------------ENYWRDGQNRFDFLVTW 495 (720)
Q Consensus 453 ~l~~~~~~f~~iF~lE~~lKi~a~--G~------------~~y~~~~wN~fD~~ivi 495 (720)
.|..++.+.-+||.++++|..-.- |+ ..|+++ |-++|++..+
T Consensus 250 s~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs-WFvIDLLSCL 305 (971)
T KOG0501|consen 250 SWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCL 305 (971)
T ss_pred eEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-HHHHHHHhcc
Confidence 455677788888999999876522 33 357664 7677776543
No 85
>PLN02964 phosphatidylserine decarboxylase
Probab=46.22 E-value=58 Score=38.31 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=50.9
Q ss_pred HHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHH
Q 004995 316 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 384 (720)
Q Consensus 316 ~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~ 384 (720)
.+.++|+..|.++++.++.++....+..+. ...+.++...+|...|.+++|.++.+|+.++...
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 356778888999999999988777665432 2356778999999999999999999999876543
No 86
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=45.40 E-value=25 Score=23.06 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.5
Q ss_pred HHHHHHhhhhcccCcCCHHHHHHHHH
Q 004995 317 LGKAFNLIDNYNVGFLNKEQCIKLFE 342 (720)
Q Consensus 317 l~~af~~L~~~~~~~l~~~~~~~~~~ 342 (720)
+.++|+..+++++|.++.++....++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 56789999999999999988766544
No 87
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=44.92 E-value=77 Score=34.68 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHH
Q 004995 311 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 380 (720)
Q Consensus 311 ~~r~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~ 380 (720)
.+|+...+..|+-+|.++++.++-.+-.+.+..+. .|+...+-...+++..|.+.|+.+|..||..
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~----~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~ 75 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD----HPKPNYEAAKMLFSAMDANRDGRVDYSEFKR 75 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcC----CCCCchHHHHHHHHhcccCcCCcccHHHHHH
Confidence 34455567778999999999999887665544443 3456667777788888888888888888754
No 88
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=43.68 E-value=2.4e+02 Score=28.68 Aligned_cols=87 Identities=28% Similarity=0.345 Sum_probs=58.4
Q ss_pred hhHHhhccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhhhc---------cCcchhHHHH
Q 004995 206 RVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQDVWIPAYK---------ASRWYCLFFV 276 (720)
Q Consensus 206 R~lrli~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~~~d~w~p~~~---------~~~~~~ifFi 276 (720)
|-+++++. +++|+.+ .+|-+.|+.+...++..++... +.|++..- -+...+++.+
T Consensus 14 ~g~~l~~r-pglrrfv-----ilpLl~ni~L~~gl~~~~~~~~----------~~wid~Lm~~iPdWl~wLs~v~~~la~ 77 (250)
T COG2981 14 RGWKLITR-PGLRRFV-----ILPLLLNILLWGGLFWLLFSQA----------LPWIDTLMPGIPDWLGWLSYLLWILAV 77 (250)
T ss_pred HhhHHhhc-chHHHHH-----HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhcCccHHHHHHHHHHHHHH
Confidence 44455555 7777766 6788888888877777766533 34444321 1224466677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 277 LYVLIGVYFVTNLILAVVYDSFKSQLAKQVSE 308 (720)
Q Consensus 277 ~~i~ig~~~~lnL~lavi~~~f~~~~~~~~~~ 308 (720)
+-+.+...+++.-..++|-.-|.+-..+.+++
T Consensus 78 L~lll~~~~lfs~v~~~IAapFng~lAEkvE~ 109 (250)
T COG2981 78 LLLLLVFAFLFSTVANLIAAPFNGLLAEKVEK 109 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 77777888888889999999998877765543
No 89
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.51 E-value=3.4e+02 Score=29.59 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhccc
Q 004995 565 VQCIYCSLGVQIFGGI 580 (720)
Q Consensus 565 ~~~ifAiiG~~lF~g~ 580 (720)
+..+.++++-.+-+|-
T Consensus 99 ~~~v~gi~~~~~q~g~ 114 (363)
T COG1377 99 VLLVVGLLANILQVGF 114 (363)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 3344555544444443
No 90
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=39.62 E-value=73 Score=27.24 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=21.1
Q ss_pred eeeeehhhhHHHHHHHHHHHHHHHHHHHHH
Q 004995 637 WTLAYFVSFYLITVLLLLNLVIAFVLEAFF 666 (720)
Q Consensus 637 ~~~iyFi~f~li~~~i~lnLfvavi~e~F~ 666 (720)
.+.+-|.++..+..|+++=++.+-|++.=.
T Consensus 13 l~K~~~FA~L~i~~FiILLIi~~~IW~~~r 42 (121)
T PF10669_consen 13 LTKIMFFAFLFIVVFIILLIITKSIWHDSR 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 355667777777888788777787876543
No 91
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=38.52 E-value=1.1e+02 Score=30.63 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=55.3
Q ss_pred HHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHHHHHhhhccCCCcccccc
Q 004995 321 FNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFEN 400 (720)
Q Consensus 321 f~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~~~~~~~~k~~~~~~~~~ 400 (720)
..+.+.+..+.+...+...+.+.+++++ .+|..-|+++.+.|+..|+.+....+--+..
T Consensus 100 I~mfd~~~~G~i~f~EF~~Lw~~i~~Wr-----------~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Ls---------- 158 (221)
T KOG0037|consen 100 ISMFDRDNSGTIGFKEFKALWKYINQWR-----------NVFRTYDRDRSGTIDSSELRQALTQLGYRLS---------- 158 (221)
T ss_pred HHHhcCCCCCccCHHHHHHHHHHHHHHH-----------HHHHhcccCCCCcccHHHHHHHHHHcCcCCC----------
Confidence 4556666677777777777766666553 4677788888888888887654432211100
Q ss_pred CCccccchHHHHHHhccccchHHHHHHHHHHHHHHHHHhh
Q 004995 401 LPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVE 440 (720)
Q Consensus 401 ~p~~~~~~~r~~~~~iv~~~~f~~~i~~iilln~v~l~~~ 440 (720)
|..++.-+++.....-..-.|+-++.+++.+-...=+..
T Consensus 159 -pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr 197 (221)
T KOG0037|consen 159 -PQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFR 197 (221)
T ss_pred -HHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHH
Confidence 001111122222221222357888888888777665543
No 92
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.57 E-value=4.6e+02 Score=30.37 Aligned_cols=44 Identities=20% Similarity=0.444 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----Hhhccc---------chhhcccccchhHHHHH
Q 004995 452 SVWQEVEFVFGWIYVLEMALK-----IYSYGF---------ENYWRDGQNRFDFLVTW 495 (720)
Q Consensus 452 ~~l~~~~~~f~~iF~lE~~lK-----i~a~G~---------~~y~~~~wN~fD~~ivi 495 (720)
..|-+.+++|-+||++++++- ..--|. +.|.++.--.+|++.++
T Consensus 261 ~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiL 318 (815)
T KOG0499|consen 261 HYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSIL 318 (815)
T ss_pred hhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhh
Confidence 467889999999999999852 111232 57888888888887554
No 93
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=34.46 E-value=58 Score=23.65 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhc
Q 004995 241 FLLFSSWLAYVIFE 254 (720)
Q Consensus 241 ~~~~fai~g~~lF~ 254 (720)
.+.+|+++|+.+|+
T Consensus 14 il~If~~iGl~IyQ 27 (49)
T PF11044_consen 14 ILGIFAWIGLSIYQ 27 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455544443
No 94
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=33.31 E-value=4.7e+02 Score=26.97 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=52.7
Q ss_pred hhhHHhhccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--CcccchhhhccCcchhHHHHHHHHHH
Q 004995 205 IRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT--VQDVWIPAYKASRWYCLFFVLYVLIG 282 (720)
Q Consensus 205 lR~lrli~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~~--~~d~w~p~~~~~~~~~ifFi~~i~ig 282 (720)
+|-++.+ ..+++|+.+ .+|-+.+++++...+...++.++-. ...- .-++|.+-.+ ...+.-+.+-+++.
T Consensus 15 ~~g~~~l-~~P~lr~~~-----liPl~inllLf~~~l~~~~~~~~~~-l~~l~~~~p~wl~wl~--~ll~~l~~l~~l~l 85 (251)
T PRK04949 15 IQGWKLI-LQPGLRRFV-----ILPLLVNILLFGGAFWWLFTQLDAW-IDWLMSQLPDWLSWLS--YLLWPLAVLSVLLV 85 (251)
T ss_pred HHHHHHh-cCcchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCccHHHHHH--HHHHHHHHHHHHHH
Confidence 4556666 778888866 6787888877776655555443311 1110 0133433111 11222333445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004995 283 VYFVTNLILAVVYDSFKSQLAKQVS 307 (720)
Q Consensus 283 ~~~~lnL~lavi~~~f~~~~~~~~~ 307 (720)
.+++++.+..+|-.-|.+...+.++
T Consensus 86 ~~~lf~~v~~~IaaPF~~~lAE~VE 110 (251)
T PRK04949 86 FSFFFSTLANFIAAPFNGLLAEKVE 110 (251)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7777777778888888777665443
No 95
>PRK10537 voltage-gated potassium channel; Provisional
Probab=31.70 E-value=7.2e+02 Score=27.49 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=33.7
Q ss_pred ccchhhhhhhhhhHHhhccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004995 195 NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED 255 (720)
Q Consensus 195 ~~~~lR~~r~lR~lrli~~~~~lr~~~~~l~~~l~~i~~v~~l~~~~~~~fai~g~~lF~~ 255 (720)
...+++.+-+++.+.++.+.+..-+...+.- . -+.++.+..+++|+++|...+++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~--l~~~~~~~~l~~~~~~g~~~~~~ 160 (393)
T PRK10537 106 WLKFLIGYCIVLLVALLIYRRDFDRSSLAAG----T--LFAVISITSLLFYSTFGALYLGD 160 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566777777777777766665555422211 1 23344555667888888877765
No 96
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=30.79 E-value=74 Score=31.90 Aligned_cols=20 Identities=30% Similarity=0.911 Sum_probs=14.5
Q ss_pred cCcchhHHHHHHHH-HHHHHH
Q 004995 267 ASRWYCLFFVLYVL-IGVYFV 286 (720)
Q Consensus 267 ~~~~~~ifFi~~i~-ig~~~~ 286 (720)
..-|+..|-++|++ +|.|+-
T Consensus 199 ~~lwyi~Y~vPY~~~ig~~i~ 219 (230)
T PF03904_consen 199 TYLWYIAYLVPYIFAIGLFIY 219 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 34577788888888 776654
No 97
>PLN02964 phosphatidylserine decarboxylase
Probab=30.62 E-value=1.3e+02 Score=35.47 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHH---HHhHhhhccCCCcccCChhhHHHHHHHH
Q 004995 312 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREE---FELIFDELDDTHDFKINLDEFADLCNAI 385 (720)
Q Consensus 312 ~r~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~~ld~~~~~~i~~~ef~~l~~~~ 385 (720)
++.+.+.++|+.+|+++++.+ ....++.+.. ...+.++ .+.++...|.+++|.++.+||.+++..+
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 344668899999999988875 2222332211 1222333 5788889999999999999998877643
No 98
>PF14658 EF-hand_9: EF-hand domain
Probab=29.89 E-value=1.3e+02 Score=24.12 Aligned_cols=58 Identities=21% Similarity=0.325 Sum_probs=43.5
Q ss_pred HHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCc-ccCChhhHHHH
Q 004995 320 AFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHD-FKINLDEFADL 381 (720)
Q Consensus 320 af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~-~~i~~~ef~~l 381 (720)
+|++-++++.|.+.-.+....++... .+..+..+.+.+.+++|.++. +.++.+.|..+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~----~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~i 61 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVT----GRSPEESELQDLINELDPEGRDGSVNFDTFLAI 61 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHc----CCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHH
Confidence 57777888888888777666665553 234566788899999999877 99999888654
No 99
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=28.24 E-value=2.4e+02 Score=27.98 Aligned_cols=62 Identities=21% Similarity=0.382 Sum_probs=44.5
Q ss_pred HHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHH
Q 004995 316 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 382 (720)
Q Consensus 316 ~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~ 382 (720)
.....|++.|.+.+|+++-.+-...++.+.. |+ +---...+..+.|.+.|++++..||.=++
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga----pQ-THL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGA----PQ-THLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCC----ch-hhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 3567799999999999999887777666531 11 11123346678899999999999886554
No 100
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=26.66 E-value=1.9e+02 Score=32.81 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHHHH
Q 004995 314 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 383 (720)
Q Consensus 314 ~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l~~ 383 (720)
.+.+..+|.-++ ++.|+++..+-...+.+.+... .....++.+.+..+.+.+.+++++.++|..++-
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~--g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL--GYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc--cchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 345677888888 8899999888666666554322 334577788888889999999999999988654
No 101
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=26.65 E-value=2.2e+02 Score=23.16 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=33.3
Q ss_pred CChhHHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHH
Q 004995 604 NDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFF 666 (720)
Q Consensus 604 ~~f~~a~~tLf~~~t~~~W~~im~~~~~~~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~ 666 (720)
.++..|++-.+..+|+-|..|+. ..+++.+++- .+..+....++.++++.+.+-+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~------p~t~~gr~~~-~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIV------PQTPAGRIFT-IIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSS------TSSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCcc------CCccchHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778887777777777776652 1134445555 44445555588888887776554
No 102
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=24.80 E-value=66 Score=28.75 Aligned_cols=59 Identities=24% Similarity=0.270 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHH
Q 004995 314 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 379 (720)
Q Consensus 314 ~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~ 379 (720)
+..+.--|..||.++++.+++.+... .+........-....++.-|.++|+.|+..|+.
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~-------l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKP-------LRRPLMPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGG-------GGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHH-------HHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 34455567788877777777665222 122111222334556666677777777777653
No 103
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=24.18 E-value=5.6e+02 Score=27.75 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=8.0
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 004995 642 FVSFYLITVLLLLNLVIAF 660 (720)
Q Consensus 642 Fi~f~li~~~i~lnLfvav 660 (720)
-.++.++....+.-+++|+
T Consensus 180 ~~~~~l~~~~~~~~~via~ 198 (342)
T TIGR01404 180 ELLKLLILVCLGFFLVVGL 198 (342)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444344444443
No 104
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=23.28 E-value=1.6e+02 Score=21.42 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004995 646 YLITVLLLLNLVIAFVLEAFFAEMEL 671 (720)
Q Consensus 646 ~li~~~i~lnLfvavi~e~F~~~~~~ 671 (720)
++++.++++.+|.-+=+.-|+.....
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkikqI 32 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIKQI 32 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888766555556665443
No 105
>PF13071 DUF3935: Protein of unknown function (DUF3935)
Probab=23.16 E-value=1.1e+02 Score=23.87 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 004995 238 GLLFLLFSSWLAYVIFEDT 256 (720)
Q Consensus 238 ~~~~~~~fai~g~~lF~~~ 256 (720)
.-++++-||.+|+|+|..-
T Consensus 12 IsfFVFwfsmLGVqmfaeF 30 (68)
T PF13071_consen 12 ISFFVFWFSMLGVQMFAEF 30 (68)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 4466777899999999753
No 106
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=22.84 E-value=6.2e+02 Score=29.26 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=16.5
Q ss_pred ccccchhHHHHHHHHHHHHHhh
Q 004995 484 DGQNRFDFLVTWVIVIGETITL 505 (720)
Q Consensus 484 ~~wN~fD~~ivi~~~i~~i~~~ 505 (720)
..|-..|-++-++-+++.++.+
T Consensus 249 vs~lvvDSiVDVIF~vDIvLNF 270 (971)
T KOG0501|consen 249 VSWLVVDSIVDVIFFVDIVLNF 270 (971)
T ss_pred eeEEEecchhhhhhhhhhhhhc
Confidence 4588888888887777777653
No 107
>PRK08156 type III secretion system protein SpaS; Validated
Probab=22.35 E-value=6.6e+02 Score=27.44 Aligned_cols=14 Identities=7% Similarity=-0.042 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhccc
Q 004995 567 CIYCSLGVQIFGGI 580 (720)
Q Consensus 567 ~ifAiiG~~lF~g~ 580 (720)
.+.++++--+-+|-
T Consensus 89 ~~~~i~~~~~Q~G~ 102 (361)
T PRK08156 89 LLAGALPTLLQTRF 102 (361)
T ss_pred HHHHHHHHHHhcCc
Confidence 33444444443443
No 108
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=22.14 E-value=1.8e+02 Score=26.96 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 004995 650 VLLLLNLVIAFVLEAFFAEMEL 671 (720)
Q Consensus 650 ~~i~lnLfvavi~e~F~~~~~~ 671 (720)
.+.++|.|+|++.-.|....+.
T Consensus 65 giyLLn~flaFLTPKfdms~eq 86 (180)
T COG5249 65 GIYLLNAFLAFLTPKFDMSFEQ 86 (180)
T ss_pred HHHHHHHHHHHhCCCCcccHhh
Confidence 3449999999998888766443
No 109
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=21.94 E-value=7.2e+02 Score=28.02 Aligned_cols=65 Identities=12% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcCCHHHHHHHHH
Q 004995 277 LYVLIGVYFVTNLILAVVYDSF------KSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFE 342 (720)
Q Consensus 277 ~~i~ig~~~~lnL~lavi~~~f------~~~~~~~~~~~~~~r~~~l~~af~~L~~~~~~~l~~~~~~~~~~ 342 (720)
++-++...++++++++++..-. ++......+...++....+.+.+ .+.....+..+.++..+..+
T Consensus 245 i~~~invl~v~slLl~i~~~~~~ii~~~r~~K~~~~~~~~~~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~ 315 (445)
T PF13608_consen 245 IFKFINVLLVISLLLQIANTIRNIINEHRQLKRRAAEEKEEKEEDEIEHLY-MLCKKHGKLPTEEEFLEYVE 315 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHH
Confidence 4556677777888877764433 33333333333344445566666 66666666667777655444
No 110
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=21.90 E-value=75 Score=18.88 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=18.0
Q ss_pred HhHhhhccCCCcccCChhhHHHHH
Q 004995 359 ELIFDELDDTHDFKINLDEFADLC 382 (720)
Q Consensus 359 ~~l~~~ld~~~~~~i~~~ef~~l~ 382 (720)
..++...|.++++.++.++|....
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 346677788888889988887654
No 111
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=21.02 E-value=6.6e+02 Score=27.30 Aligned_cols=16 Identities=6% Similarity=-0.307 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhcccc
Q 004995 566 QCIYCSLGVQIFGGIV 581 (720)
Q Consensus 566 ~~ifAiiG~~lF~g~~ 581 (720)
..+.++++..+-+|-.
T Consensus 93 ~~~~~i~~~~~q~g~~ 108 (349)
T PRK12721 93 LIVATVGTGIAQVGPL 108 (349)
T ss_pred HHHHHHHHHHHhhCce
Confidence 3344555555444443
No 112
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=20.60 E-value=3.7e+02 Score=25.56 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhhcccCcCCHHHHHHHHHHHhhhcCCCCCChHHHHhHhhhccCCCcccCChhhHHHH
Q 004995 314 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 381 (720)
Q Consensus 314 ~~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~i~~~ef~~l 381 (720)
+..+..||...++++.|.++.+..++++... --+.+.++.+.++...-.+..|.++..+|..+
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-----gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ 162 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTM-----GDRFTDEEVDEMYREAPIDKKGNFDYKAFTYI 162 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHh-----cccCCHHHHHHHHHhCCcccCCceeHHHHHHH
Confidence 4457789999999999999998877665443 24578889999988877777777777666543
No 113
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=20.20 E-value=3.1e+02 Score=29.59 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=39.0
Q ss_pred cCCCChhHHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004995 601 FNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEME 670 (720)
Q Consensus 601 ~nF~~f~~a~~tLf~~~t~~~W~~im~~~~~~~~~~~~~iyFi~f~li~~~i~lnLfvavi~e~F~~~~~ 670 (720)
.|.++|..|++--.+..|+=|++.. ..++.-....+.++.-.+.+.++..+.+|++...|+.-..
T Consensus 80 ~~~~~f~~aF~FSveT~tTIGYG~~-----~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 80 SNVNSFTSAFLFSVETQTTIGYGSR-----YPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp CT-TTHHHHHHHHHHHHTT---SSS-----EB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred ecccchhhheeEEEEEEEEeccCCc-----ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 5788999999888888887666441 1111112334555566666676777778888777766543
No 114
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=1e+03 Score=25.02 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcccCcccchhhhc---cCcc-hhHHHHHHHHHHHHHHHHHHH
Q 004995 243 LFSSWLAYVIFEDTVQDVWIPAYK---ASRW-YCLFFVLYVLIGVYFVTNLIL 291 (720)
Q Consensus 243 ~~fai~g~~lF~~~~~d~w~p~~~---~~~~-~~ifFi~~i~ig~~~~lnL~l 291 (720)
+.|.++...-|.|...-||+++-+ .+.. ..+|+|..+++..-.++++.+
T Consensus 210 ~~~~v~qAvgf~g~~~~G~i~ai~~~~~~i~v~i~m~i~a~~Ft~~av~~i~~ 262 (313)
T KOG3088|consen 210 IVFCVFQAVGFPGWGLCGWIPAIDVLSGNIAVGILMLIGAGLFTLEAVLSIWV 262 (313)
T ss_pred HHHHHHHHHccCCcchhhhhhHhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444488888899998663 3433 345677777766665655544
Done!