BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004997
(720 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/454 (48%), Positives = 287/454 (63%), Gaps = 39/454 (8%)
Query: 53 IRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQR 111
IR+ FLDF+ S+GH+V+ S+SLVP DPT+L T AGM QFK +FLG R RA TSQR
Sbjct: 7 IRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQR 66
Query: 112 CIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVE--FGLPANR 165
C+R ND+ENVG T+RHHTFFEMLGNFSFGDYFK +AI +AW T E F LP R
Sbjct: 67 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKER 126
Query: 166 LWISVYEDDDEAFEIWNKEVGVPVEHIKRMG-------ADDNFWNSGATGPCGPCSEIYY 218
LW++VYE DDEA+EIW KEVG+P E I R+G A DNFW G TGPCGPC+EI+Y
Sbjct: 127 LWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFY 186
Query: 219 DFHPDR---GCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIAR 275
D H D G D R+IE +N+VFMQ+N++ DG++EPL + ++DTG+GLERIA
Sbjct: 187 D-HGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAA 245
Query: 276 ILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFP 335
+LQ V +NY+ DL +I+ +++ + D +N +L++I DH+R+ +L++DGV P
Sbjct: 246 VLQHVNSNYDIDLFRTLIQAVAKVTGAT-----DLSNKSLRVIADHIRSCAFLIADGVMP 300
Query: 336 SNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXX 395
SN RGYV+RR+IRRAVR G +LG K F + I++ D+K
Sbjct: 301 SNENRGYVLRRIIRRAVRHGNMLGAK--------ETFFYKLVGPLIDVMGSAGEDLKRQQ 352
Query: 396 XXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFP 455
F +TLERG LLD+ LA T L G+ AF LYDT+GFP
Sbjct: 353 AQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDT--------LDGETAFRLYDTYGFP 404
Query: 456 VEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAA 489
V++T +V E + VD GF+ ME QRR+++ A
Sbjct: 405 VDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/454 (47%), Positives = 286/454 (62%), Gaps = 39/454 (8%)
Query: 53 IRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQR 111
IR+ FLDF+ S+GH+V+ S+SLVP DPT+L T AGM QFK +FLG R RA TSQR
Sbjct: 7 IRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQR 66
Query: 112 CIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVE--FGLPANR 165
C+R ND+ENVG T+RHHTFFEMLGNFSFGDYFK +AI +AW T E F LP R
Sbjct: 67 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKER 126
Query: 166 LWISVYEDDDEAFEIWNKEVGVPVEHIKRMG-------ADDNFWNSGATGPCGPCSEIYY 218
LW++VYE DDEA+EIW KEVG+P E I R+G A DNFW G TGPCGPC+EI+Y
Sbjct: 127 LWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFY 186
Query: 219 DFHPDR---GCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIAR 275
D H D G D R+IE +N+VFMQ+N++ DG++EPL + ++DT +GLERIA
Sbjct: 187 D-HGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLERIAA 245
Query: 276 ILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFP 335
+LQ V +NY+ DL +I+ +++ + D +N +L++I DH+R+ +L++DGV P
Sbjct: 246 VLQHVNSNYDIDLFRTLIQAVAKVTGAT-----DLSNKSLRVIADHIRSCAFLIADGVMP 300
Query: 336 SNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXX 395
SN RGYV+RR+IRRAVR G +LG K F + I++ D+K
Sbjct: 301 SNENRGYVLRRIIRRAVRHGNMLGAK--------ETFFYKLVGPLIDVMGSAGEDLKRQQ 352
Query: 396 XXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFP 455
F +TLERG LLD+ LA T L G+ AF LYDT+GFP
Sbjct: 353 AQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDT--------LDGETAFRLYDTYGFP 404
Query: 456 VEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAA 489
V++T +V E + VD GF+ ME QRR+++ A
Sbjct: 405 VDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/444 (45%), Positives = 286/444 (64%), Gaps = 26/444 (5%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AGM+ FK +FLG R RA
Sbjct: 4 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYV----D 179
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
RG + D R++E +NLVFMQYN+ ++G L PL NIDTG+GLERIA +LQ +N
Sbjct: 180 RG---EEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN 236
Query: 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+E D+IFP+I+ E++ Y + + T++ L++I DHLRAI + +SDGV PSN GRGYV
Sbjct: 237 FEIDIIFPLIQFGEEVSGKKYGEKFE-TDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXX 403
+RR++RRA+R G LGI E FL + +++ +++
Sbjct: 296 IRRILRRAMRFGYKLGI--------ENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVK 347
Query: 404 XXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
F++TL+ G + + +++ AL R++ LSG++ F YDT+GFPV++ E+A
Sbjct: 348 GEEKRFIKTLKAGMEYIQEVIQKALEEGRKT-----LSGKEVFTAYDTYGFPVDLIDEIA 402
Query: 464 EEHGVSVDMKGFDIEMENQRRQSQ 487
E G+ +D++GF E+E QR +++
Sbjct: 403 REKGLGIDLEGFQCELEEQRERAR 426
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/444 (45%), Positives = 286/444 (64%), Gaps = 26/444 (5%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AGM+ FK +FLG R RA
Sbjct: 3 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 62
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 63 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 122
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D
Sbjct: 123 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYV----D 178
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
RG + D R++E +NLVFMQYN+ ++G L PL NIDTG+GLERIA +LQ +N
Sbjct: 179 RG---EEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN 235
Query: 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+E D+IFP+I+ E++ Y + + T++ L++I DHLRAI + +SDGV PSN GRGYV
Sbjct: 236 FEIDIIFPLIQFGEEVSGKKYGEKFE-TDVALRVIADHLRAITFAISDGVIPSNEGRGYV 294
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXX 403
+RR++RRA+R G LGI E FL + +++ +++
Sbjct: 295 IRRILRRAMRFGYKLGI--------ENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVK 346
Query: 404 XXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
F++TL+ G + + +++ AL R++ LSG++ F YDT+GFPV++ E+A
Sbjct: 347 GEEKRFIKTLKAGMEYIQEVIQKALEEGRKT-----LSGKEVFTAYDTYGFPVDLIDEIA 401
Query: 464 EEHGVSVDMKGFDIEMENQRRQSQ 487
E G+ +D++GF E+E QR +++
Sbjct: 402 REKGLGIDLEGFQCELEEQRERAR 425
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/444 (45%), Positives = 281/444 (63%), Gaps = 26/444 (5%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AG + FK +FLG R RA
Sbjct: 4 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGXVPFKNVFLGLEKRPYKRAT 63
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFE LGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQXGDVGPCGPSSEIYV----D 179
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
RG + D R++E +NLVF QYN+ ++G L PL NIDTG GLERIA +LQ +N
Sbjct: 180 RG---EEYEGDERYLEIWNLVFXQYNRDENGVLTPLPHPNIDTGXGLERIASVLQGKNSN 236
Query: 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+E D+IFP+I+ E++ Y + + T++ L++I DHLRAI + +SDGV PSN GRGYV
Sbjct: 237 FEIDIIFPLIQFGEEVSGKKYGEKFE-TDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXX 403
+RR++RRA R G LGI E FL + +++ +++
Sbjct: 296 IRRILRRAXRFGYKLGI--------ENPFLYKGVDLVVDIXKEPYPELELSREFVKGIVK 347
Query: 404 XXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
F++TL+ G + + +++ AL R++ LSG++ F YDT+GFPV++ E+A
Sbjct: 348 GEEKRFIKTLKAGXEYIQEVIQKALEEGRKT-----LSGKEVFTAYDTYGFPVDLIDEIA 402
Query: 464 EEHGVSVDMKGFDIEMENQRRQSQ 487
E G+ +D++GF E+E QR +++
Sbjct: 403 REKGLGIDLEGFQCELEEQRERAR 426
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 193/731 (26%), Positives = 293/731 (40%), Gaps = 167/731 (22%)
Query: 10 PCGHFLFKGATGVPSARSTSASVQPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVL 69
PC + F G G+P + D +R++FL F+ H++
Sbjct: 41 PCDEYQFIGKPGIPRKYTL----------------------DEMREKFLRFFEK--HEIY 76
Query: 70 PSASL--VPEDPT----VLLTIAGMLQFKP-IFLGKVPRQVPRAATSQRCIRTNDVENVG 122
P + P P VLL A ++ F+P + G+ SQ IR D++NVG
Sbjct: 77 PHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVG 136
Query: 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWN 182
T RH T FEM+ + +F + + I W E TVE AFE +
Sbjct: 137 ITGRHFTIFEMMAHHAFN--YPGKPIYWMDE--TVEL-----------------AFEFFT 175
Query: 183 KEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYN 242
KE+ + E I +N W G G GP E+ Y R +E
Sbjct: 176 KELKMKPEDIT---FKENPWAGG--GNAGPAFEVLY-----------------RGLEVAT 213
Query: 243 LVFMQYNKKDDGSLE------------PLKQKNIDTGLGLERIARILQKVPNNYETDL-- 288
LVFMQY K + + + P++ K +DTG GLER+ + Q P Y+ L
Sbjct: 214 LVFMQYKKAPENAPQDQVVVIKGEKYIPMETKVVDTGYGLERLVWMSQGTPTAYDAVLGY 273
Query: 289 -IFPIIKKA----------------------SELANVSYAQSNDRTNLNLKI-------- 317
+ P+ K A +L ++ Y + + + +
Sbjct: 274 VVEPLKKMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIR 333
Query: 318 -------IGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEG 370
I DH +A+ ++L+DGV PSN+ GY+ R LIR+++R R LG LE
Sbjct: 334 PYELIYAIADHTKALTFMLADGVVPSNVKAGYLARLLIRKSIRHLRELG--------LEV 385
Query: 371 AFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSR 430
+A EL + K + +TL RG L+ + +A +
Sbjct: 386 PLSEIVALHIKELHKTF-PEFKEMEDIILEMIELEEKKYAETLRRGSDLVRREIAKLKKK 444
Query: 431 TRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEM---ENQRRQSQ 487
+ V +L Y++ G EI KE+AE+ GV V++ M E +R + +
Sbjct: 445 GIKEIPVEKL-----VTFYESHGLTPEIVKEIAEKEGVKVNIPDNFYSMVAKEAERTKEE 499
Query: 488 AAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLL 547
V +L + +PDT L Y+ K V++V K V+L
Sbjct: 500 KGEELVDF------ELLKDLPDTRRLYYEDPFMKEF-------DAKVLRVIKDW---VIL 543
Query: 548 NRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIXXXXXXXXX 607
+ T FY E GGQ D G L V ++ V V+ V G V +HK
Sbjct: 544 DATAFYPEGGGQPYDTGVLIVN---GREVKVTNVQKV----GKVIIHK-VEDPGAFKEGM 595
Query: 608 XXXAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLD 667
+D K R + HHT TH+L AL +V+G+ QAGS + D R D + ++ + +
Sbjct: 596 IVHGKIDWKRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYKRISE 655
Query: 668 TELEEIERLIN 678
EL+EIE L N
Sbjct: 656 EELKEIEMLAN 666
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 179/718 (24%), Positives = 277/718 (38%), Gaps = 173/718 (24%)
Query: 10 PCGHFLFKGATGVPSARSTSASVQPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVL 69
PC + F G G+P + D +R+ FL F+ H++
Sbjct: 41 PCDEYQFIGKPGIPRXYTL----------------------DEMREXFLRFFEX--HEIY 76
Query: 70 PSASLV--PEDPT----VLLTIAGMLQFKP-IFLGKVPRQVPRAATSQRCIRTNDVENVG 122
P + P P VLL A ++ F+P + G+ SQ IR D++NVG
Sbjct: 77 PHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVG 136
Query: 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWN 182
T RH T FEM+ + +F + I W E TVE AFE +
Sbjct: 137 ITGRHFTIFEMMAHHAFN--YPGXPIYWMDE--TVEL-----------------AFEFFT 175
Query: 183 KEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYN 242
KE+ + E I +N W G G GP E+ Y R +E
Sbjct: 176 KELXMXPEDIT---FKENPWAGG--GNAGPAFEVLY-----------------RGLEVAT 213
Query: 243 LVFMQYNKKDDGSLE------------PLKQKNIDTGLGLERIARILQKVPNNYETDLIF 290
LVFMQY + + + P++ +DTG GLER+ + Q P Y+ L +
Sbjct: 214 LVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDAVLGY 273
Query: 291 PI--------IKKASE-----------------LANVSYAQSNDRTNLNLKI-------- 317
+ I+K E L ++ Y + + + +
Sbjct: 274 VVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIR 333
Query: 318 -------IGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEG 370
I DH +A+ ++L+DGV PSN+ GY+ R LIR+++R R LG LE
Sbjct: 334 PYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLRELG--------LEV 385
Query: 371 AFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSR 430
+A EL + + +TL RG L+ + +A +
Sbjct: 386 PLSEIVALHIXELHKTF-PEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIA----K 440
Query: 431 TRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEM---ENQRRQSQ 487
++ G + + + Y++ G EI E+AE+ GV V++ M E +R + +
Sbjct: 441 LKKKG-IKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEE 499
Query: 488 AAHNAVKLSVDDSADLAEKIPDTEFLGYD---TLSAKAIVESLLVNGKPVIKVSKGSDVE 544
V +L + +PDT L Y+ A V ++ +
Sbjct: 500 KGEELVDF------ELLKDLPDTRRLYYEDPFMXEFDAXVLRVIXDW------------- 540
Query: 545 VLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIXXXXXX 604
V+L+ T FY E GGQ D G L V ++ V V+ V G V +H
Sbjct: 541 VILDATAFYPEGGGQPYDTGVLIVN---GREVXVTNVQXV----GXVIIHX-VEDPGAFX 592
Query: 605 XXXXXXAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFH 662
+D R + HHT TH+L AL +V+G+ QAGS + D R D + +
Sbjct: 593 EGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHY 650
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 187/675 (27%), Positives = 268/675 (39%), Gaps = 150/675 (22%)
Query: 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPT-VLLTIAGMLQFKP-IFLGKVPRQVP 104
P D R+ +L+F+ RGH + +V T + LTIA + F+P + G P
Sbjct: 59 PFELDEXREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPAN 118
Query: 105 RAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPAN 164
SQ CIR +D+++VGRT RH T FE + +F +Y KE W+ TV +
Sbjct: 119 PLTISQPCIRLDDLDSVGRTGRHLTLFEXXAHHAF-NYPGKEIY---WKNETVAY----- 169
Query: 165 RLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDR 224
E+ N E+GV E I + W G G GPC E
Sbjct: 170 ------------CTELLN-ELGVKKEDIV---YKEEPWAGG--GNAGPCLEAI------- 204
Query: 225 GCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEP-----LKQKN--IDTGLGLERIARIL 277
+E LVF + +G +E K N +DTG GLER
Sbjct: 205 ----------VGGLEVATLVFXNLEEHPEGDIEIKGARYRKXDNYIVDTGYGLERFVWAS 254
Query: 278 QKVPNNYETDLIFP-----------------------IIKKASELANVSYAQSNDRTNLN 314
+ P Y D IFP I+ ++S+LA + +R N
Sbjct: 255 KGTPTVY--DAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIXGELRGERLNQL 312
Query: 315 LKIIGD------------------------HLRAIVYLLSDGVFPSNIGRGYVVRRLIRR 350
K + D H R I++ L DG+ PSN G GY+ R IRR
Sbjct: 313 RKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFXLGDGLVPSNAGAGYLARLXIRR 372
Query: 351 AVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXXXXXXXFV 410
++R L + D +E E + LST +
Sbjct: 373 SLRLAEELELGLDLYDLVEXHKKILGFEFDVPLST------------VQEILELEKERYR 420
Query: 411 QTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSV 470
T+ +G +L+++++ R + +L D LYD+ G PVE+ +A E G V
Sbjct: 421 TTVSKGTRLVERLV----ERKK------KLEKDDLIELYDSHGIPVELAVGIAAEKGAEV 470
Query: 471 DMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVN 530
+ DI E +R S+A K L + P TE L YD +LL
Sbjct: 471 EXPK-DIYAELAKRHSKAEKVQEK-----KITLQNEYPATEKLYYDD-------PTLLEF 517
Query: 531 GKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGS 590
VI V V+LNR+ FY ESGGQ D G+L G EV DV ++ G
Sbjct: 518 EAEVIGVEGDF---VILNRSAFYPESGGQDNDVGYLIANGGK------FEVVDVLEADG- 567
Query: 591 VFVHKGTIXXXXXXXXXXXXAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLV 650
V +H + ++D +R R HH+ATH+L +L+KV+G QAG+
Sbjct: 568 VVLH--VVKGAKPEVGTKVKGVIDSDVRWRHXRHHSATHVLLYSLQKVLGNHVWQAGARK 625
Query: 651 AFDRLRFDF-NFHRP 664
F + R D +F RP
Sbjct: 626 EFSKARLDVTHFRRP 640
>pdb|1V4P|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|C Chain C, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1WXO|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|C Chain C, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
Length = 157
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 625 HTATHLLQAALKKVIGQETSQA-GSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGD 683
H+A H+++ A+ KV+G E + V ++ F R D E+ EIERL N + +
Sbjct: 9 HSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKE 68
Query: 684 ANLLQTKVMALDDAKRAGAIAMFGE 708
++ + ++A++ MFGE
Sbjct: 69 NAPIKIYELPREEAEK-----MFGE 88
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 612 IVDPKLRQRAKV-HHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTEL 670
IV P + +V H+ HL+ A+K++ G G ++ +DF+ + + +
Sbjct: 61 IVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDF 119
Query: 671 EEIERLINGWIGDANLLQTKVMALDDAK 698
E+IE+ + + + ++ KV++ D+AK
Sbjct: 120 EQIEKTMKQIVNENMKIERKVVSRDEAK 147
>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
Pyrococcus Horikoshii
Length = 216
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 542 DVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEV-KDVKKSLGSVFVHKGTIXX 600
D +LL++T FY GGQ D +GT V++V KD + ++ V
Sbjct: 27 DNAILLDQTIFYPTGGGQPHD-------RGTINGVEVLDVYKDEEGNVWHVVKEPEKFKV 79
Query: 601 XXXXXXXXXXAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQ-AGSLVAFDRLRFDF 659
+D R + HT HLL+ L +V+G+ Q GS ++ ++ R+D
Sbjct: 80 GDEVELK-----IDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDI 134
Query: 660 NFHRPLLDTELEEIERLINGWIGDA 684
+ L+ E+I L N ++ +
Sbjct: 135 AYPEN-LNKYKEQIISLFNKYVDEG 158
>pdb|1V7O|A Chain A, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1V7O|B Chain B, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1WNU|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
pdb|1WNU|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
Length = 165
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 625 HTATHLLQAALKKVIGQETSQA-GSLVAFDRLRFDFNFHRPLLDTELEEIERLIN 678
H+A H+++ A+ KV+G E + V ++ F R D E+ EIERL N
Sbjct: 9 HSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLAN 63
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 501 ADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVE 544
ADLA+K P+ FL D K I E V P K DV+
Sbjct: 57 ADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVK 100
>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase
pdb|3M6I|B Chain B, L-Arabinitol 4-Dehydrogenase
Length = 363
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 159 FGLPANRLWIS----VYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGP 209
F P + LWIS E + E+ EV V V G+D +FW G GP
Sbjct: 13 FTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGP 67
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 501 ADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVE 544
ADLA+K P+ FL D K I E V P K DV+
Sbjct: 60 ADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVK 103
>pdb|4EHI|A Chain A, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
pdb|4EHI|B Chain B, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
Length = 534
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 474 GFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKP 533
G D+ EN QS A LSV D + E + E LG++ LS + L NG
Sbjct: 10 GVDLGTENLYFQSNAXR--ALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIK 67
Query: 534 VIKVS 538
VI+VS
Sbjct: 68 VIEVS 72
>pdb|1VP2|A Chain A, Crystal Structure Of A Putative Xanthosine Triphosphate
PyrophosphataseHAM1 PROTEIN HOMOLOG (TM0159) FROM
THERMOTOGA Maritima At 1.78 A Resolution
pdb|1VP2|B Chain B, Crystal Structure Of A Putative Xanthosine Triphosphate
PyrophosphataseHAM1 PROTEIN HOMOLOG (TM0159) FROM
THERMOTOGA Maritima At 1.78 A Resolution
pdb|3S86|A Chain A, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|B Chain B, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|C Chain C, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|D Chain D, Crystal Structure Of Tm0159 With Bound Imp
Length = 208
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 410 VQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVS 469
++ +E GE L+ + A+ ++ P ++ ++Y GFP ++ EEH
Sbjct: 48 IEVVEDGETFLENSVKKAVVYGKKLKH-PVMADDSGLVIYSLGGFPGVMSARFMEEHSYK 106
Query: 470 VDMKGFDIEMENQRRQSQAAHNA--------VKLSVDDSAD--LAEKIPDTEFLGYD 516
M+ +E + R++ +A +SV+D + +A +I T GYD
Sbjct: 107 EKMRTILKMLEGKDRRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYD 163
>pdb|3QHY|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 271
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 246 MQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIF 290
+ Y K+D P+ +K++DTG+ L IA + +N +++F
Sbjct: 77 ITYTKEDLVDYSPVTEKHVDTGMTLGEIAEAAVRYSDNTAGNILF 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,905,281
Number of Sequences: 62578
Number of extensions: 893580
Number of successful extensions: 1885
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1821
Number of HSP's gapped (non-prelim): 26
length of query: 720
length of database: 14,973,337
effective HSP length: 106
effective length of query: 614
effective length of database: 8,340,069
effective search space: 5120802366
effective search space used: 5120802366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)