Query 004997
Match_columns 720
No_of_seqs 320 out of 1905
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 3E-196 1E-200 1683.6 49.0 617 6-718 18-708 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 6E-183 2E-187 1572.8 43.6 604 6-718 21-695 (739)
3 1yfs_A Alanyl-tRNA synthetase; 100.0 1E-177 4E-182 1440.7 26.4 452 47-519 2-459 (465)
4 3hy0_A Alanyl-tRNA synthetase; 100.0 7E-175 2E-179 1411.5 31.9 422 48-490 2-439 (441)
5 3kew_A DHHA1 domain protein; s 100.0 2E-43 6.7E-48 364.4 17.7 182 509-718 1-186 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 4E-39 1.4E-43 327.2 11.6 161 509-694 4-168 (216)
7 1tke_A Threonyl-tRNA synthetas 99.6 4.9E-15 1.7E-19 150.7 10.5 123 589-718 41-174 (224)
8 1v4p_A Alanyl-tRNA synthetase; 99.6 8E-15 2.7E-19 141.0 10.5 99 620-718 4-107 (157)
9 1nyr_A Threonyl-tRNA synthetas 99.4 3.6E-13 1.2E-17 156.5 7.7 125 589-718 43-173 (645)
10 1qf6_A THRRS, threonyl-tRNA sy 99.3 1.4E-12 4.9E-17 151.4 9.6 122 589-718 41-174 (642)
11 3rf1_A Glycyl-tRNA synthetase 94.9 0.071 2.4E-06 55.0 8.8 176 45-286 22-201 (311)
12 1j5w_A Glycyl-tRNA synthetase 94.3 0.11 3.9E-06 53.3 8.4 174 47-286 12-189 (298)
13 1nnh_A Asparaginyl-tRNA synthe 92.7 0.21 7E-06 52.5 7.7 102 51-159 19-141 (294)
14 4dh4_A MIF; trimer, isomerase; 65.5 3.3 0.00011 36.8 2.7 29 143-171 72-100 (114)
15 3fwu_A Macrophage migration in 60.4 5.3 0.00018 36.8 3.2 32 140-171 90-121 (133)
16 3b64_A Macrophage migration in 59.9 5.7 0.00019 35.0 3.2 30 142-171 71-100 (112)
17 3djh_A Macrophage migration in 58.2 5.9 0.0002 35.1 3.0 30 143-172 71-100 (114)
18 3kan_A D-dopachrome tautomeras 56.9 6.4 0.00022 35.3 3.0 28 144-171 73-100 (117)
19 2wkb_A Macrophage migration in 54.5 7.7 0.00026 34.9 3.2 31 142-172 71-101 (125)
20 3t5s_A Gilaa.00834.A, macropha 53.8 6.9 0.00024 36.1 2.8 29 144-172 94-122 (135)
21 3fwt_A Macrophage migration in 53.7 7.6 0.00026 35.7 3.0 29 143-171 93-121 (133)
22 1hfo_A Migration inhibitory fa 52.0 7.3 0.00025 34.2 2.5 30 143-172 71-100 (113)
23 2xcz_A Possible ATLS1-like lig 51.7 7.4 0.00025 34.3 2.5 30 143-172 72-101 (115)
24 1uiz_A MIF, macrophage migrati 49.9 8.3 0.00028 34.0 2.5 30 143-172 72-101 (115)
25 2os5_A Acemif; macrophage migr 49.3 8.5 0.00029 34.2 2.5 30 143-172 72-101 (119)
26 3dsq_A Pyrrolysyl-tRNA synthet 48.0 93 0.0032 32.1 10.6 107 50-162 73-205 (288)
27 1eov_A ASPRS, aspartyl-tRNA sy 43.9 24 0.00082 39.4 5.6 95 52-156 183-293 (487)
28 2opa_A Probable tautomerase YW 43.3 13 0.00045 28.5 2.5 29 143-171 15-43 (61)
29 1otf_A 4-oxalocrotonate tautom 43.0 13 0.00046 28.5 2.5 29 143-171 15-43 (62)
30 3abf_A 4-oxalocrotonate tautom 40.7 18 0.0006 28.0 2.9 28 144-171 17-44 (64)
31 1eh2_A EPS15; calcium binding, 35.0 1.2E+02 0.0041 26.2 7.7 45 438-482 29-77 (106)
32 1apy_A Aspartylglucosaminidase 33.5 53 0.0018 31.4 5.4 51 145-214 107-160 (162)
33 3il3_A 3-oxoacyl-[acyl-carrier 33.0 15 0.00053 38.3 1.8 79 129-218 209-288 (323)
34 3a5y_A GENX, putative lysyl-tR 32.5 17 0.00058 38.8 2.0 100 51-161 40-161 (345)
35 2dq3_A Seryl-tRNA synthetase; 32.5 63 0.0022 35.3 6.6 106 51-162 176-316 (425)
36 1mww_A Hypothetical protein HI 31.6 25 0.00084 31.5 2.7 30 142-171 73-102 (128)
37 3m20_A 4-oxalocrotonate tautom 31.2 37 0.0013 26.4 3.4 29 143-171 14-42 (62)
38 1gyx_A YDCE, B1461, hypothetic 30.9 28 0.00094 28.4 2.6 50 143-193 16-67 (76)
39 3i7f_A Aspartyl-tRNA synthetas 30.5 53 0.0018 37.3 5.7 82 52-142 249-347 (548)
40 1wyd_A Hypothetical aspartyl-t 29.4 21 0.0007 39.3 2.1 95 52-157 139-248 (429)
41 3h78_A PQS biosynthetic enzyme 28.9 16 0.00054 38.9 1.0 75 130-214 240-315 (359)
42 3nem_A Aspartyl-tRNA synthetas 28.7 21 0.00072 39.4 2.0 96 52-154 142-257 (438)
43 1n9w_A Aspartyl-tRNA synthetas 28.3 22 0.00075 39.0 2.0 97 51-158 129-241 (422)
44 3bju_A Lysyl-tRNA synthetase; 28.2 22 0.00075 40.1 2.0 99 52-156 181-298 (521)
45 4dfe_A 3-oxoacyl-[acyl-carrier 28.0 18 0.0006 37.8 1.1 78 130-218 220-298 (333)
46 3mb2_A 4-oxalocrotonate tautom 27.9 34 0.0012 27.5 2.6 29 143-171 16-44 (72)
47 2aal_A Malonate semialdehyde d 27.9 30 0.001 31.1 2.5 29 144-172 81-109 (131)
48 1c07_A Protein (epidermal grow 27.9 1.6E+02 0.0055 24.4 7.1 46 438-483 25-74 (95)
49 3m4p_A Ehasnrs, asparaginyl-tR 27.6 23 0.00078 39.3 2.0 84 52-142 161-257 (456)
50 2x4k_A 4-oxalocrotonate tautom 27.3 27 0.00092 26.5 1.9 28 144-171 19-46 (63)
51 1e1o_A Lysyl-tRNA synthetase, 27.0 24 0.00081 39.7 2.0 97 52-156 188-298 (504)
52 4ex5_A Lysine--tRNA ligase; st 26.9 24 0.00081 40.0 2.0 98 52-155 209-325 (529)
53 3a74_A Lysyl-tRNA synthetase; 26.9 24 0.00081 39.6 2.0 98 52-157 179-290 (493)
54 3i7f_A Aspartyl-tRNA synthetas 26.7 24 0.00081 40.1 2.0 28 262-289 512-539 (548)
55 2xgt_A Asparaginyl-tRNA synthe 26.7 24 0.00083 38.8 2.0 93 52-154 137-243 (435)
56 1x54_A Asparaginyl-tRNA synthe 26.6 24 0.00084 38.8 2.0 97 52-157 140-249 (434)
57 3m21_A Probable tautomerase HP 25.8 40 0.0014 26.6 2.7 28 144-171 19-46 (67)
58 1eov_A ASPRS, aspartyl-tRNA sy 25.7 26 0.00088 39.2 2.0 30 259-289 449-478 (487)
59 4i4d_A Peptide synthetase NRPS 25.3 38 0.0013 28.4 2.6 23 178-205 22-44 (93)
60 1evl_A Threonyl-tRNA synthetas 25.1 3E+02 0.01 29.1 10.4 113 50-169 33-180 (401)
61 4gyx_A Type III collagen fragm 24.9 27 0.00092 23.7 1.2 10 205-214 19-28 (31)
62 1qjt_A EH1, epidermal growth f 24.9 1.7E+02 0.0057 24.7 6.7 45 438-482 26-74 (99)
63 1fi6_A EH domain protein REPS1 23.8 1.5E+02 0.0053 24.3 6.2 45 438-482 24-72 (92)
64 1c0a_A Aspartyl tRNA synthetas 23.2 30 0.001 39.6 2.0 31 259-290 525-555 (585)
65 1l0w_A Aspartyl-tRNA synthetas 22.9 31 0.0011 39.4 2.0 29 262-290 521-549 (580)
66 3ry0_A Putative tautomerase; o 22.3 48 0.0017 25.9 2.5 29 143-171 15-43 (65)
67 3fia_A Intersectin-1; EH 1 dom 22.2 1.7E+02 0.0057 26.5 6.4 45 438-482 47-95 (121)
68 2arh_A Hypothetical protein AQ 20.1 67 0.0023 31.6 3.4 41 143-190 80-120 (203)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=3.3e-196 Score=1683.56 Aligned_cols=617 Identities=28% Similarity=0.451 Sum_probs=565.7
Q ss_pred CCcccccceeeeccCCcccccCccccc----CCCchhhcccCCCCCCChHHHHHHHHHHHhhCC---CeeecCccCcC-C
Q 004997 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRG---HKVLPSASLVP-E 77 (720)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~g---H~~v~ssslvp-~ 77 (720)
+.|-.||.+||+.+..|+.|.+..-+. +.|+ ..++||++|||++||+||++|| |++|||||||| +
T Consensus 18 ~~c~~c~~~fwt~~~~r~~cgd~~c~~y~fi~~~~-------~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~ 90 (752)
T 2zze_A 18 XXCXVCGXPFWTLDPDRETCGDPPCDEYQFIGKPG-------IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRW 90 (752)
T ss_dssp EECTTTCCEEEESCTTCCSCSSTTTSCCCCTTSCS-------SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTT
T ss_pred eeecccCcceeecCCCcCCCCCCCCCCccccCCCc-------ccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCC
Confidence 469999999999999999999876543 2222 3358999999999999999999 99999999999 8
Q ss_pred CCccceecccccCcccccc-cCCCCCCCCcccccCcccCCCccccCCCCCcccccccccCCccC-----cccHHHHHHHH
Q 004997 78 DPTVLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWA 151 (720)
Q Consensus 78 DptllFtnAGM~qFkp~fl-G~~~p~~~r~~~~QkCiR~nDld~VG~t~rHhTfFEMLGn~SFg-----dYfK~eai~~a 151 (720)
||||||||||||||||||+ |.++||++|+||||||||+|||||||+|+||||||||||||||| ||||+|||+||
T Consensus 91 dptllftnAGm~~fk~~f~~G~~~pp~~r~~~~QkCiR~~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~a 170 (752)
T 2zze_A 91 RDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELA 170 (752)
T ss_dssp CSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECCTTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHH
T ss_pred CCCeeeeecchhhhhHhhcCCCcCCCCCCccccccceecCcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHH
Confidence 9999999999999999997 99999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCCCCCCceEEEeecCCCCCCCCCCC
Q 004997 152 WEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDL 231 (720)
Q Consensus 152 we~Lt~~l~i~~~rL~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dNfW~~G~~GpcGPcsEI~yd~g~~~~~~~~~~ 231 (720)
|||||++||||++||+. +||||+|| ||||||||||||
T Consensus 171 we~lT~~~gl~~~ri~~-----------------------------~dNfW~~G--GpcGPcsEI~~d------------ 207 (752)
T 2zze_A 171 FEFFTKELXMXPEDITF-----------------------------KENPWAGG--GNAGPAFEVLYR------------ 207 (752)
T ss_dssp HHHHHHTSCCCGGGEEE-----------------------------EECCEEET--TEEECEEEEEET------------
T ss_pred HHHHhhhhhcchhheee-----------------------------ccCcccCC--CCCCCceeEEEC------------
Confidence 99999999999999741 68999999 999999999997
Q ss_pred CCCCceEEEeeeecccc-------------cccCCCccccCccCcccccchHHHHHHHHhcCCCcccccccHHHHHHHHH
Q 004997 232 GDDTRFIEFYNLVFMQY-------------NKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298 (720)
Q Consensus 232 ~~~~r~lEiwNlVFmq~-------------~r~~dG~l~~Lp~k~IDTGmGLERl~~vlqg~~s~ydtD~F~p~i~~i~~ 298 (720)
+||||||||||| +| ++|+|.|||+||||||||||||||||||++||||| +|.|||++|++
T Consensus 208 -----glEiwNlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~ 280 (752)
T 2zze_A 208 -----GLEVATLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXX 280 (752)
T ss_dssp -----TEEEEEEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHH
T ss_pred -----CEeeeeeeeeeeccccccccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHH
Confidence 299999999999 88 69999999999999999999999999999999999 99999999999
Q ss_pred HhCCCccC--------------Cccc-c--------------------------ccceEEeehhhhhHHHhhhCCCccCC
Q 004997 299 LANVSYAQ--------------SNDR-T--------------------------NLNLKIIGDHLRAIVYLLSDGVFPSN 337 (720)
Q Consensus 299 ~~g~~y~~--------------~~~~-~--------------------------~~~~rviaDH~R~~~~~i~DGv~Psn 337 (720)
++|++|+. +.+. . ++++||||||+||++|||+||++|||
T Consensus 281 ~~g~~y~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN 360 (752)
T 2zze_A 281 MAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSN 360 (752)
T ss_dssp HHTCCCCCHHHHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred hcCCCccchhhhhhhhhccccCCccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCc
Confidence 99999854 2111 1 46999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004997 338 IGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGE 417 (720)
Q Consensus 338 ~grGYvlRrilRRA~r~~~~lg~~~~~~~~~~~~fl~~Lv~~vi~~m~~~YPeL~~~~~~I~~vi~~EE~~F~~tL~~G~ 417 (720)
+|||||||||||||+|++++||++.| |++||+.|++.|+++||||.++++.|++||+.||++|.+||++|+
T Consensus 361 ~GrGYvlRrilRRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~ 431 (752)
T 2zze_A 361 VXAGYLARLLIRKSIRHLRELGLEVP---------LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGS 431 (752)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCCC---------HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCcc---------hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCChHHHHHHHhhcCCChhhHHHHHHHcCCccChh-hHHHHHHHHHHHHHHhhcccccc
Q 004997 418 KLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLS 496 (720)
Q Consensus 418 ~~l~~~i~~~~~~~~~~g~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~gl~vD~~-~F~~~m~~qk~~sr~~~~~~~~~ 496 (720)
++|+++++ +++++|. ++|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+++|++... .
T Consensus 432 ~~l~~~~~----~~~~~~~-~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~~---~ 503 (752)
T 2zze_A 432 DLVRREIA----KLKKKGI-KEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGE---E 503 (752)
T ss_dssp HHHHHHHH----HHHHHSC-SCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC----------
T ss_pred HHHHHHHH----HhhhcCC-CccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhcccc---c
Confidence 99999998 5544443 579999999999999999999999999999999999 8999999999998865211 1
Q ss_pred cCChhHHhhhCCCCccccccc---cccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcc
Q 004997 497 VDDSADLAEKIPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTN 573 (720)
Q Consensus 497 ~~~~~~l~~~~~~T~f~gY~~---~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~ 573 (720)
..+...+. ..++|+|+||++ .+++|+|+++.. .+||||+|||||||||||+|+|+|..++.
T Consensus 504 ~~~~~~~~-~~~~T~~l~Y~~~yl~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~-- 567 (752)
T 2zze_A 504 LVDFELLK-DLPDTRRLYYEDPFMXEFDAXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGR-- 567 (752)
T ss_dssp CCCSSSSS-SSCCCEEHHHHCTTCCEEEEEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTE--
T ss_pred chhhHHhc-cCCCceeecccCCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCE--
Confidence 10111121 357899999998 688999999974 26999999999999999999999987655
Q ss_pred cccceEEEEEEEEecCCEEEEEEEeeccccCCCCEEEEEEchhhhhhHhhhCcHHHHHHHHHHhHhCCceeeeeeeccCC
Q 004997 574 QQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFD 653 (720)
Q Consensus 574 ~~~~~~~V~dV~k~~~g~ivH~~~~~~g~l~~Gd~V~~~VD~~rR~~~mr~HTAtHLL~aaLr~vlG~~v~q~Gs~v~~d 653 (720)
.+.|.+|++. +|.++|.++. .+.+++|++|.++|||+||+.+|++|||+|||++||+++||.|++|+||++.++
T Consensus 568 ----~~~V~dv~k~-~g~ivH~~~~-~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d 641 (752)
T 2zze_A 568 ----EVXVTNVQXV-GXVIIHXVED-PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTD 641 (752)
T ss_dssp ----EEEEEEEEEE-TTEEEEEESC-GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSS
T ss_pred ----EEEEEeeeec-CcEEEEeccc-cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCC
Confidence 7999999998 8999999975 477899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHhcCccccc--CCcCCCceEEEe
Q 004997 654 RLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVKISS 718 (720)
Q Consensus 654 ~~R~DF~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~eeA~~~g~~alf--~eky~d~VRVV~ 718 (720)
++||||++++++|++++++||+.||++|++++||++.+++++||++.+++++| +++|++.||||+
T Consensus 642 ~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~ 708 (752)
T 2zze_A 642 WARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVX 708 (752)
T ss_dssp CEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEE
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999888898 899999999996
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=6e-183 Score=1572.78 Aligned_cols=604 Identities=30% Similarity=0.508 Sum_probs=556.3
Q ss_pred CCcccccceeeeccCCcccccCccccc----CCCchhhcccCCCCCCChHHHHHHHHHHHhhCCCeeecCccCcC-CCCc
Q 004997 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPT 80 (720)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp-~Dpt 80 (720)
+.|-.||.+||+.+..|+.|.+..-+. +.|+ ..++|+++|||++||+||+++||+++||||||| +|||
T Consensus 21 ~~c~~cg~~fwt~~~~r~~cgd~~c~~y~fi~~~~-------~~~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dpt 93 (739)
T 2ztg_A 21 KRCPKCGKHFWTADPEREICGDPPCESYSFIGNPV-------FKKPFELDEMREYYLNFFERRGHGRIERYPVVARWRTD 93 (739)
T ss_dssp ECCCSSSSCEEECCSSCCCCCSSSSCCCCCTTSCS-------SSSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSS
T ss_pred eECCCCCCceecCCCCcCCCCCCCCCCccccCCCC-------cCCCCCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCC
Confidence 579999999999999999999876544 2222 335799999999999999999999999999999 8999
Q ss_pred cceecccccCcccccc-cCCCCCCCCcccccCcccCCCccccCCCCCcccccccccCCccC-----cccHHHHHHHHHHH
Q 004997 81 VLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEF 154 (720)
Q Consensus 81 llFtnAGM~qFkp~fl-G~~~p~~~r~~~~QkCiR~nDld~VG~t~rHhTfFEMLGn~SFg-----dYfK~eai~~awe~ 154 (720)
||||||||+||||+|+ |..+||++|+|++|||||+|||||||+|+||||||||||||||| ||||+|||+|||||
T Consensus 94 llft~agm~~fkp~~~~g~~~p~~~~~~~~Q~ciR~~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~ 173 (739)
T 2ztg_A 94 IYLTIASIADFQPFVTSGVAPPPANPLTISQPCIRLDDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTEL 173 (739)
T ss_dssp BSBCCSGGGGGTTTTTTSSSCCSSSSEEEEEEEECGGGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHH
T ss_pred ceeeecChhhCcHhHhCCCCCCCCCCcccccccccCcccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHH
Confidence 9999999999999997 99999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCCCCCCceEEEeecCCCCCCCCCCCCCC
Q 004997 155 STVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDD 234 (720)
Q Consensus 155 Lt~~l~i~~~rL~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dNfW~~G~~GpcGPcsEI~yd~g~~~~~~~~~~~~~ 234 (720)
| ++|||||+||. + +||||+|| ||||||||||||
T Consensus 174 l-~~~g~~~~~i~--------------------------~---~dnfW~~g--Gp~Gpc~Ei~~d--------------- 206 (739)
T 2ztg_A 174 L-NELGVKKEDIV--------------------------Y---KEEPWAGG--GNAGPCLEAIVG--------------- 206 (739)
T ss_dssp H-HHHTCCGGGCE--------------------------E---EEEEEEET--TEEEEEEEEEET---------------
T ss_pred H-HHhCCCHHHee--------------------------e---ccCcccCC--CCCCCeeEEEEC---------------
Confidence 9 88999999752 1 68999999 999999999997
Q ss_pred CceEEEeeeecccccccCCCccc-------cCccCcccccchHHHHHHHHhcCCCcccccccHHHHHHHHHHhCCCcc--
Q 004997 235 TRFIEFYNLVFMQYNKKDDGSLE-------PLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYA-- 305 (720)
Q Consensus 235 ~r~lEiwNlVFmq~~r~~dG~l~-------~Lp~k~IDTGmGLERl~~vlqg~~s~ydtD~F~p~i~~i~~~~g~~y~-- 305 (720)
+|||||+|||||||+++|++. |||+|+||||||||||||+|||++||||| +|.|||++|++++|++|+
T Consensus 207 --g~EiwnlVfmq~~r~~~g~~~~~~~~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~y~~~ 283 (739)
T 2ztg_A 207 --GLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNRE 283 (739)
T ss_dssp --TEEEEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCSSCTT
T ss_pred --CEEeeeeeeEEeeecCCCceeecCccccCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCCcccc
Confidence 299999999999999999998 99999999999999999999999999999 999999999999999985
Q ss_pred CC-----------------ccc-c-------c-------------------cceEEeehhhhhHHHhhhCCCccCCCCCc
Q 004997 306 QS-----------------NDR-T-------N-------------------LNLKIIGDHLRAIVYLLSDGVFPSNIGRG 341 (720)
Q Consensus 306 ~~-----------------~~~-~-------~-------------------~~~rviaDH~R~~~~~i~DGv~Psn~grG 341 (720)
.+ ... . + +++||||||+||++|||+||++|||+|||
T Consensus 284 ~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grG 363 (739)
T 2ztg_A 284 DERVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAG 363 (739)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHH
T ss_pred ccchhhhhhhhhhcccccCcccchhHHHHHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcc
Confidence 11 001 0 1 58999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004997 342 YVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLD 421 (720)
Q Consensus 342 YvlRrilRRA~r~~~~lg~~~~~~~~~~~~fl~~Lv~~vi~~m~~~YPeL~~~~~~I~~vi~~EE~~F~~tL~~G~~~l~ 421 (720)
||||||||||+|++++||++.| |++||+.|++.|++ ||.++++.|++||+.||++|.+||++|+++|+
T Consensus 364 YvlRrilRRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~ 431 (739)
T 2ztg_A 364 YLARLMIRRSLRLAEELELGLD---------LYDLVEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVE 431 (739)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSC---------HHHHHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcc---------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 89999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCChHHHHHHHhhcCCChhhHHHHHHHcCCccChh-hHHHHHHHHHHHHHHhhcccccccCCh
Q 004997 422 QMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLSVDDS 500 (720)
Q Consensus 422 ~~i~~~~~~~~~~g~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~gl~vD~~-~F~~~m~~qk~~sr~~~~~~~~~~~~~ 500 (720)
++++ +++ .|||++||+||||||||+|||++||+|+|++||++ +|+++|++||++||++.. .. .
T Consensus 432 ~~~~----~~~------~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~a~~~~~---~~---~ 495 (739)
T 2ztg_A 432 RLVE----RKK------KLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKVQE---KK---I 495 (739)
T ss_dssp HHHH----HHS------BCCHHHHHHHHHHHCCCHHHHHHHHHHTTCBCCCCTTHHHHHHHTTSBCCCCCC---CC---C
T ss_pred HHHH----Hhc------CCCHHHHHHHHHhcCCCHHHHHHHHHHcCCeeCCcccHHHHHHHHHHHHhhccc---cc---h
Confidence 9998 442 29999999999999999999999999999999999 899999999999876421 11 1
Q ss_pred hHHhhhCCCCccccccc---cccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccc
Q 004997 501 ADLAEKIPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTA 577 (720)
Q Consensus 501 ~~l~~~~~~T~f~gY~~---~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~ 577 (720)
.+....++|+|+||++ .+++|+|+++.. .+||||+|||||||||||+|+|+|..++.
T Consensus 496 -~~~~~~~~T~~l~Y~~~y~~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~------ 555 (739)
T 2ztg_A 496 -TLQNEYPATEKLYYDDPTLLEFEAEVIGVEG-------------DFVILNRSAFYPESGGQDNDVGYLIANGG------ 555 (739)
T ss_dssp -CCSSCCCCCEECTTTCTTCCEEEEEEEEEET-------------TEEEESEECCCCSBTTBCCCCEEEEETTE------
T ss_pred -hhhccCCCceeecccCCcccEEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEECCE------
Confidence 1222257899999999 688999999974 26999999999999999999999987655
Q ss_pred eEEEEEEEEecCCEEEEEEEeecccc-CCCCEEEEEEchhhhhhHhhhCcHHHHHHHHHHhHhCCceeeeeeeccCCceE
Q 004997 578 VVEVKDVKKSLGSVFVHKGTIREGVL-EVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLR 656 (720)
Q Consensus 578 ~~~V~dV~k~~~g~ivH~~~~~~g~l-~~Gd~V~~~VD~~rR~~~mr~HTAtHLL~aaLr~vlG~~v~q~Gs~v~~d~~R 656 (720)
.+.|.+|++. +|.++|.++ +.+ ++|++|.++|||+||+.+|++|||+|||++||+++||.|++|+||+++++++|
T Consensus 556 ~~~V~dv~k~-~g~ivH~~~---~~~~~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r 631 (739)
T 2ztg_A 556 KFEVVDVLEA-DGVVLHVVK---GAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKAR 631 (739)
T ss_dssp EEEECEEEEE-TTEEEEECC---SSCCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCE
T ss_pred EEEEEEEEEE-CCEEEEEEc---ccCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEE
Confidence 7999999998 899999986 445 69999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHhcCccccc--CCcCCCceEEEe
Q 004997 657 FDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVKISS 718 (720)
Q Consensus 657 ~DF~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~eeA~~~g~~alf--~eky~d~VRVV~ 718 (720)
|||++++++|++++++||+.||++|++|+||++.+++++||++.+++++| +++|++.||||+
T Consensus 632 ~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~l~L~~~~~~~~d~VRVV~ 695 (739)
T 2ztg_A 632 LDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQ 695 (739)
T ss_dssp EEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHHHHHCGGGGTTCCCCSSEEEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhCCHhhhcCCCCCCCeEEEEE
Confidence 99999889999999999999999999999999999999999999888888 688999999996
No 3
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=1.2e-177 Score=1440.74 Aligned_cols=452 Identities=46% Similarity=0.846 Sum_probs=419.7
Q ss_pred CCChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceecccccCcccccccCCCCCCCCcccccCccc--C--CCcccc
Q 004997 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIR--T--NDVENV 121 (720)
Q Consensus 47 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp-~DptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR--~--nDld~V 121 (720)
+|+++|||++||+||++|||++|||||||| +|||||||||||+||||||+|+++||++|+|||||||| + ||||||
T Consensus 2 ~~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~t~sQkCiRag~~hNDlenV 81 (465)
T 1yfs_A 2 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQV 81 (465)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGB
T ss_pred CCCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCCCCceeccccccccCCCcccHhhc
Confidence 389999999999999999999999999999 89999999999999999999999999999999999999 4 499999
Q ss_pred CCCCCcccccccccCCccCcccHHHHHHHHHHHhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCc
Q 004997 122 GRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF 201 (720)
Q Consensus 122 G~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~i~~~rL~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dNf 201 (720)
|+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++|+||++||++.+|||++||+++|.+|||
T Consensus 82 G~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~G~p~~rI~~~g~~dNF 161 (465)
T 1yfs_A 82 GYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNF 161 (465)
T ss_dssp TTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHE
T ss_pred CCCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCCCHHHHHHHHHhcCCCHHHeeeCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhcCC
Q 004997 202 WNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVP 281 (720)
Q Consensus 202 W~~G~~GpcGPcsEI~yd~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~dG~l~~Lp~k~IDTGmGLERl~~vlqg~~ 281 (720)
|+||++||||||||||||+|++++ +|+|||||||||||||+|++||+|.|||+||||||||||||||||||++
T Consensus 162 W~mG~tGPCGPCsEI~yD~g~~~~-------~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~ 234 (465)
T 1yfs_A 162 WQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKN 234 (465)
T ss_dssp EESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCS
T ss_pred ccCCCCcCCCCCeEEEEccCCCCC-------CCCCEEEeeeeeeeEEEecCCCccccCCCCceecCcCHHHHHHHHcCCC
Confidence 999999999999999999998875 2789999999999999999999999999999999999999999999999
Q ss_pred CcccccccHHHHHHHHHHhCCCccCCccccccceEEeehhhhhHHHhhhCCCccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 004997 282 NNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIK 361 (720)
Q Consensus 282 s~ydtD~F~p~i~~i~~~~g~~y~~~~~~~~~~~rviaDH~R~~~~~i~DGv~Psn~grGYvlRrilRRA~r~~~~lg~~ 361 (720)
||||||+|.|||++|++++|++|+.+. ..++++||||||+||++|||+||++|||+|||||||||||||+|++++||++
T Consensus 235 snYdtDlf~pii~~i~~~~g~~Y~~~~-~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYVLRRilRRavr~g~~Lg~~ 313 (465)
T 1yfs_A 235 SNFEIDIIFPLIQFGEEVSGKKYGEKF-ETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIE 313 (465)
T ss_dssp SGGGSTTTHHHHHHHHHHHCCCTTSCH-HHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccchhhhHHHHHHHHHHHhCCCCCCCc-ccceeEEEEcchhhhhhhhhccccccCCCCcchHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999997654 5688999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q 004997 362 GDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLS 441 (720)
Q Consensus 362 ~~~~~~~~~~fl~~Lv~~vi~~m~~~YPeL~~~~~~I~~vi~~EE~~F~~tL~~G~~~l~~~i~~~~~~~~~~g~~~~l~ 441 (720)
.| ||++||++|++.|+++||||.++++.|++||+.||++|.+||++|+++|+++++ +++++|. ++||
T Consensus 314 ~~--------fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~----~~~~~~~-~~l~ 380 (465)
T 1yfs_A 314 NP--------FLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQ----KALEEGR-KTLS 380 (465)
T ss_dssp SC--------CHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTC-CEEC
T ss_pred ch--------hHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCC-CcCC
Confidence 99 999999999999999999999999999999999999999999999999999998 5544442 4799
Q ss_pred hHHHHHHHhhcCCChhhHHHHHHHcCCccChhhHHHHHHHHHHHHHHhhccccccc-CChhHHhhhCCCCccccccccc
Q 004997 442 GQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSV-DDSADLAEKIPDTEFLGYDTLS 519 (720)
Q Consensus 442 g~~af~LyDTyGfP~dlt~~ia~e~gl~vD~~~F~~~m~~qk~~sr~~~~~~~~~~-~~~~~l~~~~~~T~f~gY~~~~ 519 (720)
|++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++...... .+...+.+...+|+|+||+.++
T Consensus 381 G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~~~~~~~~~~~~~ll~~~~~seF~GY~~~~ 459 (465)
T 1yfs_A 381 GKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPVYSHLKELGKTSAFVGAAALE 459 (465)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC---------CCCCCTTCHHHHTTSBCGGGC-
T ss_pred HHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhhcCccchhHHHHHHhhccCCceeecchhhh
Confidence 99999999999999999999999999999999999999999999998765422111 1111222223468999998654
No 4
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=6.7e-175 Score=1411.52 Aligned_cols=422 Identities=51% Similarity=0.915 Sum_probs=406.8
Q ss_pred CChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceecccccCcccccccCCCCCCCCcccccCcccC----CCccccC
Q 004997 48 SSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVG 122 (720)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp-~DptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~----nDld~VG 122 (720)
+|++|||++||+||++|||++|||||||| +|||||||||||+||||||+|+++||++|+||||||||+ |||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~~~sQkCiR~gGKHnDlenVG 81 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVG 81 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBT
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCCCCCccccccceecCCCCCCHHhhC
Confidence 68999999999999999999999999999 899999999999999999999999999999999999999 9999999
Q ss_pred CCCCcccccccccCCccCcccHHHHHHHHHHHhh--cccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccC----
Q 004997 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFST--VEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMG---- 196 (720)
Q Consensus 123 ~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt--~~l~i~~~rL~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~---- 196 (720)
+|+|||||||||||||||||||+|||+||||||| ++|||||+|||||||.+|+||++||++.+|||++||+++|
T Consensus 82 ~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~D~Ea~~iW~~~~Gvp~~rI~~~g~~~~ 161 (441)
T 3hy0_A 82 YTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKG 161 (441)
T ss_dssp TBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETTCHHHHHHHHHTTCCCGGGEEEECSTTS
T ss_pred CCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCCCHHHHHHHHHccCCCHHHeeecCcccc
Confidence 9999999999999999999999999999999999 6699999999999999999999999999999999999999
Q ss_pred ---CCCCccCCCCCCCCCCceEEEeecCCCCCCCCC--CCCCCCceEEEeeeecccccccCCCccccCccCcccccchHH
Q 004997 197 ---ADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDV--DLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLE 271 (720)
Q Consensus 197 ---~~dNfW~~G~~GpcGPcsEI~yd~g~~~~~~~~--~~~~~~r~lEiwNlVFmq~~r~~dG~l~~Lp~k~IDTGmGLE 271 (720)
.+||||+||+|||||||||||||+|+.++++.. ..+||+|||||||||||||+|+++|+|.|||+||||||||||
T Consensus 162 ~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLE 241 (441)
T 3hy0_A 162 APYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLE 241 (441)
T ss_dssp BTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHH
T ss_pred ccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCccccCCCCceecCCCHH
Confidence 899999999999999999999999998765432 348899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcccccccHHHHHHHHHHhCCCccCCccccccceEEeehhhhhHHHhhhCCCccCCCCCchHHHHHHHHH
Q 004997 272 RIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRA 351 (720)
Q Consensus 272 Rl~~vlqg~~s~ydtD~F~p~i~~i~~~~g~~y~~~~~~~~~~~rviaDH~R~~~~~i~DGv~Psn~grGYvlRrilRRA 351 (720)
||||||||++||||||+|.|||++|++++|++| ..++++||||||+||++|||+||++|||+|||||||||||||
T Consensus 242 Rla~vlQg~~snYdtDlf~pii~~i~~~~g~~~-----~~~~s~rvIADH~R~~~f~iaDGv~PsNeGrGYVLRRilRRA 316 (441)
T 3hy0_A 242 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-----LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRA 316 (441)
T ss_dssp HHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCCC-----TTCHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccccchhHHHHHHHHHHHhCCCc-----cccceeEEecchHHHHHHHHhcCcccCCCCcchhHHHHHHHH
Confidence 999999999999999999999999999999986 347899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004997 352 VRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRT 431 (720)
Q Consensus 352 ~r~~~~lg~~~~~~~~~~~~fl~~Lv~~vi~~m~~~YPeL~~~~~~I~~vi~~EE~~F~~tL~~G~~~l~~~i~~~~~~~ 431 (720)
+|++++||++.| ||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++ ++
T Consensus 317 vr~g~~Lg~~~~--------fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~----~~ 384 (441)
T 3hy0_A 317 VRHGNMLGAKET--------FFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELA----KL 384 (441)
T ss_dssp HHHHHHHTCCSC--------CGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH----SC
T ss_pred HHHHHHhCCCCc--------cHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh
Confidence 999999999999 999999999999999999999999999999999999999999999999999998 54
Q ss_pred hcCCCCCCCChHHHHHHHhhcCCChhhHHHHHHHcCCccChhhHHHHHHHHHHHHHHhh
Q 004997 432 RESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAH 490 (720)
Q Consensus 432 ~~~g~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~gl~vD~~~F~~~m~~qk~~sr~~~ 490 (720)
+ + ++|||++||+||||||||+|||++||+|+|++||+++|+++|++||+|||++.
T Consensus 385 ~--~--~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~~ 439 (441)
T 3hy0_A 385 S--G--DTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREAS 439 (441)
T ss_dssp C--S--SEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred c--C--CCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhcC
Confidence 2 2 57999999999999999999999999999999999999999999999999863
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2e-43 Score=364.39 Aligned_cols=182 Identities=20% Similarity=0.226 Sum_probs=167.3
Q ss_pred CC-cccccccc---ccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEE
Q 004997 509 DT-EFLGYDTL---SAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDV 584 (720)
Q Consensus 509 ~T-~f~gY~~~---~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV 584 (720)
+| +.+||+++ +++|+|+++..+ ++.+.|+||+|||||||||||+|+|+|. .+.|.+|
T Consensus 1 mT~~~ly~~d~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----------~~~V~~v 61 (241)
T 3kew_A 1 MSLTKLYYEDQYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----------GIKVLDV 61 (241)
T ss_dssp --CEEGGGTCTTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----------TEEEEEE
T ss_pred CcchhhhhhCcccceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEEe----------eEEEEEE
Confidence 36 78899885 789999999864 3457899999999999999999999994 4799999
Q ss_pred EEecCCEEEEEEEeeccccCCCCEEEEEEchhhhhhHhhhCcHHHHHHHHHHhHhCCceeeeeeeccCCceEEEEecCCC
Q 004997 585 KKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRP 664 (720)
Q Consensus 585 ~k~~~g~ivH~~~~~~g~l~~Gd~V~~~VD~~rR~~~mr~HTAtHLL~aaLr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~ 664 (720)
++. +|.++|+++ +++++|++|.++|||+||+++|++|||+|||++||+++||.+ |+|+++.++++||||+ ++
T Consensus 62 ~~~-~g~i~H~~~---~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~ 133 (241)
T 3kew_A 62 YEE-EGKVYHVLE---KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GF 133 (241)
T ss_dssp EEE-TTEEEEEES---SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SC
T ss_pred EEe-CCEEEEEEC---CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CC
Confidence 998 899999986 678999999999999999999999999999999999999986 6999999999999999 68
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHhcCcccccCCcCCCceEEEe
Q 004997 665 LLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISS 718 (720)
Q Consensus 665 lt~eel~~IE~~vNe~I~~~~pV~~~~~~~eeA~~~g~~alf~eky~d~VRVV~ 718 (720)
+|++++++||+.||++|++|+||++.+++++||++.+++++ +++|++.||||+
T Consensus 134 lt~e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~~~~-~e~~~~~VRvv~ 186 (241)
T 3kew_A 134 LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRA-LPKTDEEIRIVE 186 (241)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCCCSSC-CCCCSSCCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcChhhc-CCccCCcEEEEE
Confidence 99999999999999999999999999999999999998886 788999999996
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=4e-39 Score=327.24 Aligned_cols=161 Identities=29% Similarity=0.342 Sum_probs=145.5
Q ss_pred CCcccccccc---ccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEE
Q 004997 509 DTEFLGYDTL---SAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVK 585 (720)
Q Consensus 509 ~T~f~gY~~~---~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~ 585 (720)
+|+.+||+++ +++|+|+++. + + +|+||+|||||||||||+|+|+|. .++|.+|+
T Consensus 4 ~t~~ly~~d~y~~~~~a~V~~~~-~---------~---~vvld~T~Fype~GGQ~~D~G~i~----------~~~V~~v~ 60 (216)
T 2e1b_A 4 MTRKLYYEDAYLKEAKGRVLEIR-D---------N---AILLDQTIFYPTGGGQPHDRGTIN----------GVEVLDVY 60 (216)
T ss_dssp SCCCSTTSCTTCCEEEECBCCCC-S---------S---CCCBSCCCSCCCCTTCCCCCEEET----------TEEEEEEE
T ss_pred hhHHHHhhCcccceeeEEEEEEe-C---------C---EEEEeCCCccCCCCCCCCCEEEEc----------cEEEEEEE
Confidence 6888999884 6789999983 1 1 699999999999999999999994 27899999
Q ss_pred EecCCEEEEEEEeeccccCCCCEEEEEEchhhhhhHhhhCcHHHHHHHHHHhHhCCc-eeeeeeeccCCceEEEEecCCC
Q 004997 586 KSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQE-TSQAGSLVAFDRLRFDFNFHRP 664 (720)
Q Consensus 586 k~~~g~ivH~~~~~~g~l~~Gd~V~~~VD~~rR~~~mr~HTAtHLL~aaLr~vlG~~-v~q~Gs~v~~d~~R~DF~~~~~ 664 (720)
+..+|.++|+++. .+.+++|++|.+.|||+||+.+|++|||+|||++||+++||.+ +.+.|++++|+++||||+++++
T Consensus 61 ~~~~~~i~H~~~~-~~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~ 139 (216)
T 2e1b_A 61 KDEEGNVWHVVKE-PEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN 139 (216)
T ss_dssp CCTTCCCEEEESC-GGGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSC
T ss_pred ECcCCEEEEEEcc-CCCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCC
Confidence 8646899999975 4679999999999999999999999999999999999999974 4678999999999999999888
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEEcCH
Q 004997 665 LLDTELEEIERLINGWIGDANLLQTKVMAL 694 (720)
Q Consensus 665 lt~eel~~IE~~vNe~I~~~~pV~~~~~~~ 694 (720)
++++ +++||+.||++|++|+||++.++++
T Consensus 140 lt~e-l~~IE~~vn~~I~~~~pv~~~~~~~ 168 (216)
T 2e1b_A 140 LNKY-KEQIISLFNKYVDEGGEVKIWWEGD 168 (216)
T ss_dssp GGGG-HHHHHHHHHHHHHHCCBEEEEESSS
T ss_pred CCHH-HHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 9987 9999999999999999999999986
No 7
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.57 E-value=4.9e-15 Score=150.69 Aligned_cols=123 Identities=17% Similarity=0.282 Sum_probs=100.8
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEEchhhhh-hHhhhCcHHHHHHHHHHhHhCC-ceeeeeeeccCCceEEEEecCCCCC
Q 004997 589 GSVFVHKGTIREGVLEVGREVEAIVDPKLRQ-RAKVHHTATHLLQAALKKVIGQ-ETSQAGSLVAFDRLRFDFNFHRPLL 666 (720)
Q Consensus 589 ~g~ivH~~~~~~g~l~~Gd~V~~~VD~~rR~-~~mr~HTAtHLL~aaLr~vlG~-~v~q~Gs~v~~d~~R~DF~~~~~lt 666 (720)
+|.+++. ...+..|+.|+ -|+++.+. ..|.+|||+|||++|++++||. ++.+ | ++.++.+|+||++.+++|
T Consensus 41 Ng~l~dL----~~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~-g-~~~~~g~y~d~~~~~~~t 113 (224)
T 1tke_A 41 NGELVDA----CDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAI-G-PVIDNGFYYDVDLDRTLT 113 (224)
T ss_dssp TTEEEET----TCCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECC-C-CEETTEEEEEEECSSCCC
T ss_pred CCEEecc----ceEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEE-C-CccCCeEEEEEeCCCCCC
Confidence 6777763 24677888888 47877664 7899999999999999999974 4433 4 555889999999888999
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHhcCc-------ccccCC-c-CCCceEEEe
Q 004997 667 DTELEEIERLINGWIGDANLLQTKVMALDDAKRAGA-------IAMFGE-K-YGEQVKISS 718 (720)
Q Consensus 667 ~eel~~IE~~vNe~I~~~~pV~~~~~~~eeA~~~g~-------~alf~e-k-y~d~VRVV~ 718 (720)
++++++||+.||++|++|+||+..+++++||.+++. ..++.+ . +.+.|||++
T Consensus 114 ~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~ 174 (224)
T 1tke_A 114 QEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYF 174 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEE
Confidence 999999999999999999999999999999998643 455554 4 667899986
No 8
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.56 E-value=8e-15 Score=141.00 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=80.9
Q ss_pred hHhhhCcHHHHHHHHHHhHhCCceeeeee-eccCCceEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHH
Q 004997 620 RAKVHHTATHLLQAALKKVIGQETSQAGS-LVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAK 698 (720)
Q Consensus 620 ~~mr~HTAtHLL~aaLr~vlG~~v~q~Gs-~v~~d~~R~DF~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~eeA~ 698 (720)
..|++|||+|||++|+++++|.++.|+++ .+.++..++||+..+++|++++.+||+.||++|++|+||+..+++++||.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 46999999999999999999966666666 66665677777766789999999999999999999999999999999999
Q ss_pred hcCcccccC-CcCC---CceEEEe
Q 004997 699 RAGAIAMFG-EKYG---EQVKISS 718 (720)
Q Consensus 699 ~~g~~alf~-eky~---d~VRVV~ 718 (720)
++....+|. +++| +.||||+
T Consensus 84 ~~f~~~~~~~~~~~~~~~~vrv~~ 107 (157)
T 1v4p_A 84 KMFGEDMYDLFPVPEDVRILKVVV 107 (157)
T ss_dssp HHHGGGGSCSSCCCTTCCEEEEEE
T ss_pred HhhCccccccccCCCCCCeEEEEE
Confidence 873323442 2234 3699986
No 9
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.37 E-value=3.6e-13 Score=156.48 Aligned_cols=125 Identities=19% Similarity=0.337 Sum_probs=99.4
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEEchhhhhhHhhhCcHHHHHHHHHHhHhCCceeeeeeeccCCceEEEEecCCCCCHH
Q 004997 589 GSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDT 668 (720)
Q Consensus 589 ~g~ivH~~~~~~g~l~~Gd~V~~~VD~~rR~~~mr~HTAtHLL~aaLr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~e 668 (720)
+|.+++. ..++..+..|+..-..+..-..+.+|||+|||++|+++++|.+..|.|+.+ ++++|+||++.+++|++
T Consensus 43 ng~~~dl----~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~t~e 117 (645)
T 1nyr_A 43 NGQLVDL----TKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNISSD 117 (645)
T ss_dssp TTEEECT----TSCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCCCST
T ss_pred CCEEEeC----CcccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCCCCHH
Confidence 5665542 234566666666444555678999999999999999999998888999998 89999999998899999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCHHHHHhcCc-----ccccCCcCC-CceEEEe
Q 004997 669 ELEEIERLINGWIGDANLLQTKVMALDDAKRAGA-----IAMFGEKYG-EQVKISS 718 (720)
Q Consensus 669 el~~IE~~vNe~I~~~~pV~~~~~~~eeA~~~g~-----~alf~eky~-d~VRVV~ 718 (720)
++.+||+.||++|++|+||+..+++++||.+... ..+...... +.||||+
T Consensus 118 dl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~ 173 (645)
T 1nyr_A 118 DFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYS 173 (645)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEE
Confidence 9999999999999999999999999999988622 111111111 4799986
No 10
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.33 E-value=1.4e-12 Score=151.42 Aligned_cols=122 Identities=18% Similarity=0.308 Sum_probs=96.9
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEEchh-hhhhHhhhCcHHHHHHHHHHhHhCCceeeeeeeccCCceEEEEecCCCCCH
Q 004997 589 GSVFVHKGTIREGVLEVGREVEAIVDPK-LRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLD 667 (720)
Q Consensus 589 ~g~ivH~~~~~~g~l~~Gd~V~~~VD~~-rR~~~mr~HTAtHLL~aaLr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~ 667 (720)
+|.+++.- .++..+.+|+ -|+++ .+-..+.+|||+|||++|+++++|..-.+.|+.+. +.+|+||++..++|+
T Consensus 41 ng~~~dl~----~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~~~~t~ 114 (642)
T 1qf6_A 41 NGELVDAC----DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDRTLTQ 114 (642)
T ss_dssp TTEEEETT----SCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECSSCCCH
T ss_pred CCEEeccc----cccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccC-CeeEEEEeCCCCCCH
Confidence 67766532 3455565555 44554 56788999999999999999999752237899886 779999999889999
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHhcCcccccCCcC----------C-CceEEEe
Q 004997 668 TELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKY----------G-EQVKISS 718 (720)
Q Consensus 668 eel~~IE~~vNe~I~~~~pV~~~~~~~eeA~~~g~~alf~eky----------~-d~VRVV~ 718 (720)
+++.+||+.||++|++|+||+..+++++||.+++.. ++++| + +.||||+
T Consensus 115 edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~--~~e~yk~~li~~~~~~~~~v~vy~ 174 (642)
T 1qf6_A 115 EDVEALEKRMHELAEKNYDVIKKKVSWHEARETFAN--RGESYKVSILDENIAHDDKPGLYF 174 (642)
T ss_dssp HHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHH--HTCHHHHHHHHHHSCTTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhh--hCCcchhhhhhcccCCCCceEEEE
Confidence 999999999999999999999999999999987432 33333 2 4799986
No 11
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=94.92 E-value=0.071 Score=55.03 Aligned_cols=176 Identities=23% Similarity=0.309 Sum_probs=111.4
Q ss_pred CCCCChHHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccCcccc-cccCCCCCCCCcccccCcccCCCc---cc
Q 004997 45 DFPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---EN 120 (720)
Q Consensus 45 ~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~DptllFtnAGM~qFkp~-flG~~~p~~~r~~~~QkCiR~nDl---d~ 120 (720)
.++|+-.+|-.+--+|..++|..++.++.+= .|--.|-|. ||..--|.-=+++=+|+|-|-.|= ||
T Consensus 22 ~~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~E----------vGAGT~hPaTfLRalGpePw~~AYVqPsRRP~DGRYGeN 91 (311)
T 3rf1_A 22 SNAMTFSQMILNLQNYWQEQGCAIMQPYDMP----------AGAGTFHPATFLRSLGKKPWAAAYVAPSRRPTDGRYGEN 91 (311)
T ss_dssp GGSCCHHHHHHHHHHHHHTTTCEECCCCSSC----------CSSGGGSHHHHTTTSSSSCEEEEEEEEEECGGGCCTTCC
T ss_pred cCcCcHHHHHHHHHHHHHHCCCEEECCcccc----------ccCCCCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCCC
Confidence 3478999999999999999999998877653 233477884 565555555579999999999652 22
Q ss_pred cCCCCCcccccccccCCccCcccHHHHHHHHHHHhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCC
Q 004997 121 VGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDN 200 (720)
Q Consensus 121 VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~i~~~rL~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dN 200 (720)
=- --.||.=|..+=--|-.+- .+.=.+-| +.+||||.. |=++|- +||
T Consensus 92 PN-RLq~yyQfQVilKPsP~ni-----QeLYL~SL-~alGId~~~-------------------------HDIRFV-EDn 138 (311)
T 3rf1_A 92 PN-RLGAYYQFQVLIKPSPDNI-----QELYLKSL-ENLGFDLKS-------------------------HDIRFV-EDN 138 (311)
T ss_dssp SS-CCSEEEEEEEEEESCCTTH-----HHHHHHHH-HHTTCCGGG-------------------------SCEEEE-ECC
T ss_pred ch-hhhhheeeEEEEcCCCccH-----HHHHHHHH-HHhCCCccc-------------------------cCeeEe-ccC
Confidence 22 2456666666656665541 11111222 346777653 234543 445
Q ss_pred ccCCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhcC
Q 004997 201 FWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKV 280 (720)
Q Consensus 201 fW~~G~~GpcGPcsEI~yd~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~dG~l~~Lp~k~IDTGmGLERl~~vlqg~ 280 (720)
|+-=.-|--|===|+-.| .+||=- |+=|.+ -.| + ++..-.+.-=+||||||+.|||+
T Consensus 139 -WEsPTLGAWGLGWEVWld-----------------GMEVTQ--FTYFQQ-vGG-i-~c~pv~~EITYGLERlamylQ~v 195 (311)
T 3rf1_A 139 -WESPSLGAWGLGWEVWLD-----------------GMEVTQ--FTYFQQ-VGG-I-AVDLVSAEITYGLERIAMYLQNV 195 (311)
T ss_dssp -EEETTTTEEEEEEEEEET-----------------TEEEEE--EEEEEE-ETT-E-ECSSCCEEEEEEHHHHHHHHTTC
T ss_pred -CCCCcccccccceEEEEc-----------------CeeEee--eeeeee-eCC-c-cccccceeeehhHHHHHHHHhCC
Confidence 652112555555566654 266653 333333 234 2 34556677789999999999999
Q ss_pred CCcccc
Q 004997 281 PNNYET 286 (720)
Q Consensus 281 ~s~ydt 286 (720)
.|+||.
T Consensus 196 d~vyDl 201 (311)
T 3rf1_A 196 DNVYDI 201 (311)
T ss_dssp SSGGGS
T ss_pred Ceeeec
Confidence 999986
No 12
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=94.27 E-value=0.11 Score=53.28 Aligned_cols=174 Identities=26% Similarity=0.323 Sum_probs=109.4
Q ss_pred CCChHHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccCcccc-cccCCCCCCCCcccccCcccCCCc---cccC
Q 004997 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENVG 122 (720)
Q Consensus 47 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~DptllFtnAGM~qFkp~-flG~~~p~~~r~~~~QkCiR~nDl---d~VG 122 (720)
-|--.+|-.+--+|..++|..++.++.+= .|--.|-|. ||..--|.-=+++-+|+|.|-.|= ||=-
T Consensus 12 ~~~fQ~iIl~Lq~fWa~~GC~i~QpyD~E----------vGAGT~~PaTfLRaLGpepw~~AYVqPsRRP~DGRYGeNPN 81 (298)
T 1j5w_A 12 HMYLQDVIMKLNDFWASKGCLLEQPYDME----------VGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPN 81 (298)
T ss_dssp -CCHHHHHHHHHHHHHHTTCEECCCCSSC----------CSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTT
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEcCcccc----------cccccCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCCCch
Confidence 35678888899999999999998877653 234467773 444444444579999999999662 2322
Q ss_pred CCCCcccccccccCCccCcccHHHHHHHHHHHhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCcc
Q 004997 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFW 202 (720)
Q Consensus 123 ~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~i~~~rL~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dNfW 202 (720)
--.||.=|..+=--|-.+- .+.=.+-| +.+||||.. |=++|- +|| |
T Consensus 82 -RLq~y~QfQVilKPsP~ni-----QeLYL~SL-~alGid~~~-------------------------HDIRFV-EDn-W 127 (298)
T 1j5w_A 82 -RLQRYFQYQVIIKPSPENS-----QELYLESL-EYLGINLKE-------------------------HDIRFV-EDN-W 127 (298)
T ss_dssp -CCSEEEEEEEEEESCCSSH-----HHHHHHHH-HHTTCCTTT-------------------------SCEEEE-EEC-C
T ss_pred -hhhhheeeEEEECCCCccH-----HHHHHHHH-HHhCCCccc-------------------------CCceee-ccC-C
Confidence 3457777777766676651 11111212 356777764 224543 455 6
Q ss_pred CCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhcCCC
Q 004997 203 NSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPN 282 (720)
Q Consensus 203 ~~G~~GpcGPcsEI~yd~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~dG~l~~Lp~k~IDTGmGLERl~~vlqg~~s 282 (720)
+-=.-|.-|===|+-.| ++||=-.- =|.+ -.| .++..-.+.-=+||||||+.|||+.|
T Consensus 128 EsPTLGAwGLGWEVWld-----------------GMEITQFT--YFQQ-vGG--i~c~pv~~EITYGLERiamylQ~vd~ 185 (298)
T 1j5w_A 128 ESPTLGAWGVGWEVWLD-----------------GMEITQFT--YFQQ-IGG--ISLKDIPLEITYGLERIAMYLQGVDN 185 (298)
T ss_dssp EEGGGTEEEEEEEEEET-----------------TEEEEEEE--EEEE-BTT--BCCSSCCEEEEEEHHHHHHHHHTCSS
T ss_pred CCCccccccccceeeEc-----------------ceeeehhh--hhhh-cCC--cccCccceeecccHHHHHHHHhCCCc
Confidence 52112555655676664 37775433 3333 233 33555667778999999999999999
Q ss_pred cccc
Q 004997 283 NYET 286 (720)
Q Consensus 283 ~ydt 286 (720)
+||.
T Consensus 186 vydl 189 (298)
T 1j5w_A 186 VYEV 189 (298)
T ss_dssp GGGC
T ss_pred eecc
Confidence 9997
No 13
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=92.72 E-value=0.21 Score=52.49 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCC-CCccceec-----ccccCc----ccccccCCCC----------CCCCccccc
Q 004997 51 DSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTI-----AGMLQF----KPIFLGKVPR----------QVPRAATSQ 110 (720)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~ssslvp~-DptllFtn-----AGM~qF----kp~flG~~~p----------~~~r~~~~Q 110 (720)
+.|.+.+-+||.++|...|..--+.+. | ++-.. |=|.++ ++++|-+ .| +..|+-..-
T Consensus 19 s~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~-Spe~~~~~l~~~g~~rvf~ig 95 (294)
T 1nnh_A 19 TKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTH-SMILHKQLAIAMGLKKIFVLS 95 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECS-CSHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEecc-ChHHHHHHHhhcCccceEEEE
Confidence 467778889999999988864333332 1 11100 111111 1233321 11 356888889
Q ss_pred CcccCCCccccCCCCCcccccccccC-CccCcccHHHHHHHHHHHhhccc
Q 004997 111 RCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFSTVEF 159 (720)
Q Consensus 111 kCiR~nDld~VG~t~rHhTfFEMLGn-~SFgdYfK~eai~~awe~Lt~~l 159 (720)
||.|.-+-. . .|+||..=|-|++- .+|.|| .|.+..+.+|+...+
T Consensus 96 ~~FR~E~pq-~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 96 PNIRLESRQ-K-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp EEECCCCGG-G-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred ccEeCCCCC-C-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 999985410 1 25799978888874 444463 688888888876553
No 14
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=65.45 E-value=3.3 Score=36.78 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
-|++-++-..++|.++||+||+|+||.++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~ 100 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFT 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 46777888889999999999999999886
No 15
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=60.36 E-value=5.3 Score=36.80 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=26.1
Q ss_pred CcccHHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 140 GDYFKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 140 gdYfK~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
+.=-|++-.+-.-++|.+.|||||+|+||.++
T Consensus 90 ~~e~n~~~s~~i~~~l~~~LgI~~~riyI~f~ 121 (133)
T 3fwu_A 90 GPSEPEKVTSIVTAAITKECGIVADRIFVLYF 121 (133)
T ss_dssp CTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCcChhhEEEEEE
Confidence 33456666777789999999999999999876
No 16
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=59.93 E-value=5.7 Score=34.96 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 142 YFKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 142 YfK~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
=-|++-++-..++|.+.||++|+|+||++.
T Consensus 71 eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~ 100 (112)
T 3b64_A 71 SEPEKVTSIVTAAITKECGIVADRIFVLYF 100 (112)
T ss_dssp THHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEE
Confidence 357788888889999999999999999886
No 17
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=58.24 E-value=5.9 Score=35.14 Aligned_cols=30 Identities=10% Similarity=0.285 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEeC
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~~ 172 (720)
-|++-.+---++|.+.||+|++|+||.++.
T Consensus 71 ~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 71 QNRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 356666667789999999999999998863
No 18
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=56.90 E-value=6.4 Score=35.29 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 144 KKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 144 K~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
+++-.+--.++|.+.||+|++|+||.++
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~ 100 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFF 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEE
Confidence 4555566678899999999999999886
No 19
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=54.50 E-value=7.7 Score=34.91 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHHhhcccCCCCCceEEEEeC
Q 004997 142 YFKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (720)
Q Consensus 142 YfK~eai~~awe~Lt~~l~i~~~rL~vTv~~ 172 (720)
=-|++-++-..++|.+.||+||+++||++.+
T Consensus 71 eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 71 SNNSLLADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 3578888888999999999999999998864
No 20
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=53.82 E-value=6.9 Score=36.10 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCceEEEEeC
Q 004997 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (720)
Q Consensus 144 K~eai~~awe~Lt~~l~i~~~rL~vTv~~ 172 (720)
|++-.+-.-++|.+.||+||+|+||.++.
T Consensus 94 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 94 NPSISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp CHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CchHHHHHHHHHHHhcccCccEEEEEecc
Confidence 56666677789999999999999998864
No 21
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=53.66 E-value=7.6 Score=35.69 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
-|++-.+-.-++|.+.|||||+|+||.++
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~rvyI~f~ 121 (133)
T 3fwt_A 93 KPKMMTPRIAAAITKECGIPAERIYVFYY 121 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEE
Confidence 45666677778999999999999999775
No 22
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=51.98 E-value=7.3 Score=34.16 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEeC
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~~ 172 (720)
-|++-++-..++|.+.||++|+++||++.+
T Consensus 71 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 71 RNRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 477778888899999999999999998863
No 23
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=51.71 E-value=7.4 Score=34.29 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEeC
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~~ 172 (720)
-|++-++-..++|.+.||+||+|+||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 72 RTQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 477888888899999999999999998863
No 24
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=49.87 E-value=8.3 Score=33.98 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEeC
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~~ 172 (720)
-|++-++-..++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 72 QNKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 377778888899999999999999998863
No 25
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=49.31 E-value=8.5 Score=34.23 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEeC
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~~ 172 (720)
-|++-++-..++|.+.||+||+++||.+.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 72 DNIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 377778888899999999999999998863
No 26
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=47.98 E-value=93 Score=32.12 Aligned_cols=107 Identities=12% Similarity=0.096 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcC-C--CCccceecccccCcc-----cccccC---------------CCCCCCCc
Q 004997 50 GDSIRKRFLDFYASRGHKVLPSASLVP-E--DPTVLLTIAGMLQFK-----PIFLGK---------------VPRQVPRA 106 (720)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~ssslvp-~--DptllFtnAGM~qFk-----p~flG~---------------~~p~~~r~ 106 (720)
...+.+...++|.+.|...|-..++.+ . +.+.......|..+. .+.|-. ...+--|+
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plrl 152 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEEE
Confidence 468889999999999999999998886 2 111111111233222 122211 01111267
Q ss_pred ccccCcccCCCccccCCCCCcccccccccCCccCc---ccHHHHHHHHHHHhhcccCCC
Q 004997 107 ATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD---YFKKEAIQWAWEFSTVEFGLP 162 (720)
Q Consensus 107 ~~~QkCiR~nDld~VG~t~rHhTfFEMLGn~SFgd---YfK~eai~~awe~Lt~~l~i~ 162 (720)
.-..+|.|.... |. .|.--|.|++-+.+|. .-=.|.+..+.++|. .|||+
T Consensus 153 feiG~vFR~E~~---~~--~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~-~LGl~ 205 (288)
T 3dsq_A 153 FEIGTCYRKESQ---GA--QHLNEFTMLNLTELGTPLEERHQRLEDMARWVLE-AAGIR 205 (288)
T ss_dssp EEEEEEECSCCS---SS--CCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHH-HHTCC
T ss_pred EEEeeEEecCCC---CC--CcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHH-HcCCC
Confidence 777888886332 32 2444788999888884 112356666666663 46774
No 27
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=43.90 E-value=24 Score=39.45 Aligned_cols=95 Identities=20% Similarity=0.320 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCC--CC--ccceecccccCc-ccccccCCC---------CCCCCcccccCcccCCC
Q 004997 52 SIRKRFLDFYASRGHKVLPSASLVPE--DP--TVLLTIAGMLQF-KPIFLGKVP---------RQVPRAATSQRCIRTND 117 (720)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~ssslvp~--Dp--tllFtnAGM~qF-kp~flG~~~---------p~~~r~~~~QkCiR~nD 117 (720)
.|-+.+-+||.++|...|..--+.+. +. ..+-|+. | ++++|-+.+ ....|+=..-+|.|.-+
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~~----~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~ 258 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTY----FKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAEN 258 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEE----TTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceecc----CCccEEcccChHHHHHHHHhcCCCceEEEeccEecCC
Confidence 34455678999999888865544441 11 1111111 1 133443211 12467778889999955
Q ss_pred ccccCCCCCcccccccccC-CccC-cccHHHHHHHHHHHhh
Q 004997 118 VENVGRTSRHHTFFEMLGN-FSFG-DYFKKEAIQWAWEFST 156 (720)
Q Consensus 118 ld~VG~t~rHhTfFEMLGn-~SFg-dYfK~eai~~awe~Lt 156 (720)
. .|+||..=|-||.- .||| || +|.++.+-+++.
T Consensus 259 ~----~~~Rh~pEFt~le~e~af~~~~--~dlm~l~E~ll~ 293 (487)
T 1eov_A 259 S----NTHRHMTEFTGLDMEMAFEEHY--HEVLDTLSELFV 293 (487)
T ss_dssp C----CCTTCCSEEEEEEEEEECSSCT--HHHHHHHHHHHH
T ss_pred C----CCCccchhhhhhhhhhhhhcCH--HHHHHHHHHHHH
Confidence 3 37899999999997 7898 57 556666555543
No 28
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=43.31 E-value=13 Score=28.45 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
-|++-++-..+.|.+.||+|++++||.+.
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v~V~i~ 43 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKIVVFIE 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEE
Confidence 46667777788899999999999999775
No 29
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=43.02 E-value=13 Score=28.48 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
-|++-++-..+.|.+.||+|++++||.+.
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~ 43 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLIT 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 46677777888899999999999999775
No 30
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=40.69 E-value=18 Score=28.02 Aligned_cols=28 Identities=21% Similarity=0.397 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 144 KKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 144 K~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
|++-++-.-+.|.+.+|+|++++||.+.
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~ 44 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILY 44 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEE
Confidence 5566777778888899999999999775
No 31
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=34.95 E-value=1.2e+02 Score=26.23 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=37.7
Q ss_pred CCCChHHHHHHHhhcCCChhhHHHHHHHcCC----ccChhhHHHHHHHH
Q 004997 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 482 (720)
Q Consensus 438 ~~l~g~~af~LyDTyGfP~dlt~~ia~e~gl----~vD~~~F~~~m~~q 482 (720)
..|+++++-.++-+.|+|.+.+.+|.++... .+|.++|..+|..-
T Consensus 29 G~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~ 77 (106)
T 1eh2_A 29 GFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLV 77 (106)
T ss_dssp SCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHH
T ss_pred CeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 4799999999999999999988888877543 48889999998654
No 32
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=33.46 E-value=53 Score=31.45 Aligned_cols=51 Identities=18% Similarity=0.401 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCC---CCCCCCCCce
Q 004997 145 KEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNS---GATGPCGPCS 214 (720)
Q Consensus 145 ~eai~~awe~Lt~~l~i~~~rL~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dNfW~~---G~~GpcGPcs 214 (720)
+-|-+||.+ .|++.+.| -.+++++.|++. ..-...-|||.- .++..|||..
T Consensus 107 ~GA~~fA~~-----~G~~~~~l------~t~~~~~~~~~~--------~~~~~qpn~~~nv~p~~~~~cgpy~ 160 (162)
T 1apy_A 107 ESATTFAQS-----MGFINEDL------STSASQALHSDW--------LARNCQPNYWRNVIPDPSKYCGPYK 160 (162)
T ss_dssp HHHHHHHHH-----TTCCCCCC------CCHHHHHHHHHH--------HHTTSCSCCBCSCBSCTTTCCSCCB
T ss_pred HHHHHHHHH-----cCCCcccc------CCHHHHHHHHHH--------HHhccCCCccccCCCCCCCCCCCCC
Confidence 456667665 57776443 256777777764 111245699954 2356799853
No 33
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=33.01 E-value=15 Score=38.30 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=52.9
Q ss_pred cccccccCCccCcccHHHHHHHHHHHhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCC
Q 004997 129 TFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 207 (720)
Q Consensus 129 TfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~i~~~rL-~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dNfW~~G~~ 207 (720)
.+|.|.|...|.-+- +.+.-+++-+.+..|++++.+ |+=.+....-..+-+.+.+|+|++++. |.+...
T Consensus 209 ~~~~~~g~~v~~~~~--~~~~~~i~~~l~~~gl~~~did~~v~Hq~~~~i~~~~~~~lgl~~ek~~--------~~l~~~ 278 (323)
T 3il3_A 209 GYIEMQGNETFKLAV--RELSNVVEETLLANNLDKKDLDWLVPHQANLRIITATAKKLEMDMSQVV--------VTLDKY 278 (323)
T ss_dssp SCCEECHHHHHHHHH--HHHHHHHHHHHHTTTCCTTTCCEEEECCSCHHHHHHHHHHTTCCGGGBC--------CCHHHH
T ss_pred CcEEEcCHHHHHHHH--HHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHHHHHHcCcCHHHhh--------ccHhhc
Confidence 467888887764222 223334444445679999888 666777777777777888999999884 223445
Q ss_pred CCCCCceEEEe
Q 004997 208 GPCGPCSEIYY 218 (720)
Q Consensus 208 GpcGPcsEI~y 218 (720)
|+||.+| |++
T Consensus 279 GNt~sas-i~~ 288 (323)
T 3il3_A 279 ANNSAAT-VPV 288 (323)
T ss_dssp CBCGGGH-HHH
T ss_pred CchHHHH-HHH
Confidence 8899887 443
No 34
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=32.53 E-value=17 Score=38.82 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccCcc------------cccccCCC---------CCCCCcccc
Q 004997 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFK------------PIFLGKVP---------RQVPRAATS 109 (720)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~ssslvp~DptllFtnAGM~qFk------------p~flG~~~---------p~~~r~~~~ 109 (720)
++|-+.+-+||.++|-..|..--|.+..+. -|+..+|+ +.+|-+.+ ....|+=..
T Consensus 40 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~~----~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqI 115 (345)
T 3a5y_A 40 AAIMAEIRRFFADRGVLEVETPCMSQATVT----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQL 115 (345)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCC----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEecCCC----CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEEE
Confidence 355566778999999988876545442111 12222333 22332211 135678888
Q ss_pred cCcccCCCccccCCCCCccccccccc-CCccCcccHHHHHHHHHHHhhcccCC
Q 004997 110 QRCIRTNDVENVGRTSRHHTFFEMLG-NFSFGDYFKKEAIQWAWEFSTVEFGL 161 (720)
Q Consensus 110 QkCiR~nDld~VG~t~rHhTfFEMLG-n~SFgdYfK~eai~~awe~Lt~~l~i 161 (720)
-||.|.-|+ |.||..=|-||- -.+|.|| ++.++.+=++|..+++.
T Consensus 116 g~~FR~E~~-----~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~v~~~ 161 (345)
T 3a5y_A 116 CRSFRNEEM-----GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLDC 161 (345)
T ss_dssp EEEECCCCC-----BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHHCC
T ss_pred EcceeCCCC-----cccccchhheeeeeeeCCCH--HHHHHHHHHHHHHHHcC
Confidence 999999665 799999999985 3566775 55666666666655543
No 35
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.45 E-value=63 Score=35.34 Aligned_cols=106 Identities=19% Similarity=0.274 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCCCCccceeccc--------ccCcc--cccc-cCCCC--------------C-CC
Q 004997 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAG--------MLQFK--PIFL-GKVPR--------------Q-VP 104 (720)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~ssslvp~DptllFtnAG--------M~qFk--p~fl-G~~~p--------------~-~~ 104 (720)
..|.+.++++|.++|+..|-.-.+++.+ ++ ..+| |..|. .++| ...++ . --
T Consensus 176 ~~L~~~~~~~~~~~Gy~ev~tP~l~~~~--l~-~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~LPl 252 (425)
T 2dq3_A 176 RALINFMLDLHTKKGYKEICPPHLVKPE--IL-IGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENLPI 252 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEECHH--HH-HHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTCCE
T ss_pred HHHHHHHHHHHHHcCCEEEECCccccHH--HH-HhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccCCe
Confidence 4566778888888999998766666522 11 1222 22221 1222 11111 1 12
Q ss_pred CcccccCcccCCCccccCCCC----CcccccccccCCccCcc-----cHHHHHHHHHHHhhcccCCC
Q 004997 105 RAATSQRCIRTNDVENVGRTS----RHHTFFEMLGNFSFGDY-----FKKEAIQWAWEFSTVEFGLP 162 (720)
Q Consensus 105 r~~~~QkCiR~nDld~VG~t~----rHhTfFEMLGn~SFgdY-----fK~eai~~awe~Lt~~l~i~ 162 (720)
|++-.++|.|.- ...-|++. |=|. |.|..-++|+.= .-+|.+.++.++|. .||||
T Consensus 253 rl~~~g~~FR~E-~~~~Gr~~~Gl~R~re-F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~-~LGL~ 316 (425)
T 2dq3_A 253 YLTAYTPCYRRE-AGAYGKDIRGIIRQHQ-FDKVELVKIVHPDTSYDELEKLVKDAEEVLQ-LLGLP 316 (425)
T ss_dssp EEEEEEEEECCC-CSCCSSSCSSSSSCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-HHTCC
T ss_pred EEEEecCEecCC-CCcccccccCcccccc-eEEeeEEEECCHHHHHHHHHHHHHHHHHHHH-HCCCc
Confidence 677788999963 22223221 3333 456666888631 22577889999885 58887
No 36
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=31.56 E-value=25 Score=31.50 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 142 YFKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 142 YfK~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
=-|++-++-..+.|.+.||+|++++||.+.
T Consensus 73 eqK~~l~~~l~~~l~~~lg~~~~~v~V~i~ 102 (128)
T 1mww_A 73 GTKKRLIKMLFSELEYKLGIRAHDVEITIK 102 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhEEEEEE
Confidence 347777888888999999999999999875
No 37
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=31.21 E-value=37 Score=26.44 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
-|++-++-.-+.+.+.+|+|++.++|.+.
T Consensus 14 qK~~L~~~it~~~~~~lg~~~~~v~V~i~ 42 (62)
T 3m20_A 14 KKREFVERLTSVAAEIYGMDRSAITILIH 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEE
Confidence 36677777778888899999999999875
No 38
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=30.91 E-value=28 Score=28.41 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEeCChHH--HHHHHHHhcCCCCCcee
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDE--AFEIWNKEVGVPVEHIK 193 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~~~D~e--~~~iW~~~~g~~~~rI~ 193 (720)
-|++-++-.-+.|.+.||+|++++||.+.+-+.+ ++ +|...+.=..+.++
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v~V~i~e~~~~~w~~-v~~~~~~~~~~~l~ 67 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA-IWDAEIAPQMEALI 67 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEECCGGGHHH-HHHHTTTTTTTTCS
T ss_pred HHHHHHHHHHHHHHHHhCcCCceEEEEEEEeChHHEEE-EEchhhccChhhee
Confidence 4666777778889999999999999999876433 44 55543333333443
No 39
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=30.47 E-value=53 Score=37.31 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccCc------ccccccCCCC---------CCCCcccccCcccCC
Q 004997 52 SIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF------KPIFLGKVPR---------QVPRAATSQRCIRTN 116 (720)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~ssslvp~DptllFtnAGM~qF------kp~flG~~~p---------~~~r~~~~QkCiR~n 116 (720)
+|-+.+-+||.++|...|..--+++.++ .+|-..| ++++|-+.+- ...|+-..-+|.|.-
T Consensus 249 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E 323 (548)
T 3i7f_A 249 ACCGLFREFLTSQKFVEIHTPKLIGCSS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAE 323 (548)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSBC------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCS
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEecccC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecC
Confidence 4555667999999988887655555221 1223333 2334433211 256777788999985
Q ss_pred CccccCCCCCcccccccccCC-ccC-cc
Q 004997 117 DVENVGRTSRHHTFFEMLGNF-SFG-DY 142 (720)
Q Consensus 117 Dld~VG~t~rHhTfFEMLGn~-SFg-dY 142 (720)
+. .|.||.+=|-||--. +|+ ||
T Consensus 324 ~~----~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 324 NS----NTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp CC----CSSSCCSCEEEEEEEEECSSCT
T ss_pred CC----CCCCcchhhhchhhhhhhhcCH
Confidence 53 378999999999764 787 56
No 40
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=29.40 E-value=21 Score=39.31 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC--CCC--ccceecccccCc-ccccccCCCC---------CCCCcccccCcccCCC
Q 004997 52 SIRKRFLDFYASRGHKVLPSASLVP--EDP--TVLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTND 117 (720)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~ssslvp--~Dp--tllFtnAGM~qF-kp~flG~~~p---------~~~r~~~~QkCiR~nD 117 (720)
.|-+.+-+||.++|...|..--+.+ ..+ .++-|+. | ++++|-+ .| ...|+-..-+|.|.-+
T Consensus 139 ~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~----~~~~~~L~~-Spql~~~~~~~g~~rvf~ig~~FR~E~ 213 (429)
T 1wyd_A 139 LALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIY----FGKEAFLAQ-SPQLYKELMAGVVERVFEVAPAWRAEE 213 (429)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEE----TTEEEEECS-CCHHHHHHHHHHHSEEEEEEEEECCCC
T ss_pred HHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEec----CCceEEecC-CcHHHHHHHHhCcCceEEEcccccccC
Confidence 5566788999999998886654444 122 1222221 1 2334421 12 1357778889999864
Q ss_pred ccccCCCCCcccccccccC-CccCcccHHHHHHHHHHHhhc
Q 004997 118 VENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFSTV 157 (720)
Q Consensus 118 ld~VG~t~rHhTfFEMLGn-~SFgdYfK~eai~~awe~Lt~ 157 (720)
.+ ++||..=|-|+.- .+|.|| +|.+..+.+++..
T Consensus 214 ~~----~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 248 (429)
T 1wyd_A 214 SD----TPFHLAEFISMDVEMAFADY--NDVMQLLEKILHN 248 (429)
T ss_dssp CC----SSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred Cc----cccccceeeEeeeeecCCCH--HHHHHHHHHHHHH
Confidence 43 5799978888764 455564 5555555555433
No 41
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*
Probab=28.91 E-value=16 Score=38.93 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=50.2
Q ss_pred ccccccCCccCcccHHHHHHHHHHHhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCC
Q 004997 130 FFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 208 (720)
Q Consensus 130 fFEMLGn~SFgdYfK~eai~~awe~Lt~~l~i~~~rL-~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dNfW~~G~~G 208 (720)
+|.|.|...|.-+ -+.+.-+++=+.+..|++++.+ |+=.+....-..+-+.+.+|+|++|+. |.+...|
T Consensus 240 ~~~m~g~~v~~~~--~~~~~~~i~~~L~~~gl~~~did~~v~Hq~n~~i~~~~~~~lgl~~ek~~--------~~l~~~G 309 (359)
T 3h78_A 240 EFLMRGRPMFEHA--SQTLVRIAGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFA--------VTVDRLG 309 (359)
T ss_dssp SCEECHHHHHHHH--HHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHHHHHHHHHHTCCGGGBC--------CCHHHHC
T ss_pred ceEeccHHHHHHH--HHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHHHHHHHhCcCHHHhh--------hhhhccc
Confidence 5778777655322 2233334444445679999988 665777777777777888999999874 2334568
Q ss_pred CCCCce
Q 004997 209 PCGPCS 214 (720)
Q Consensus 209 pcGPcs 214 (720)
+||.+|
T Consensus 310 Nt~sAs 315 (359)
T 3h78_A 310 NMASAS 315 (359)
T ss_dssp BCGGGH
T ss_pred chHHHH
Confidence 899887
No 42
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=28.73 E-value=21 Score=39.37 Aligned_cols=96 Identities=16% Similarity=0.242 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccCc----ccccccCCC---------CCCCCcccccCcccCCCc
Q 004997 52 SIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF----KPIFLGKVP---------RQVPRAATSQRCIRTNDV 118 (720)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~ssslvp~DptllFtnAGM~qF----kp~flG~~~---------p~~~r~~~~QkCiR~nDl 118 (720)
+|-+.+-+||.++|...|..--+.+.++.- .|-+.+| ++++|-+.+ ....|+-..-+|.|.-+.
T Consensus 142 ~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg---~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~ 218 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHTPKIIATATEG---GTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEH 218 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSC---SSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSS
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEecCCCCC---CccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCC
Confidence 555677789999998888643333311000 0001111 233332211 135677788899998654
Q ss_pred cccCCCCCcccccccccC-CccCc-cc-----HHHHHHHHHHH
Q 004997 119 ENVGRTSRHHTFFEMLGN-FSFGD-YF-----KKEAIQWAWEF 154 (720)
Q Consensus 119 d~VG~t~rHhTfFEMLGn-~SFgd-Yf-----K~eai~~awe~ 154 (720)
+ |.||..=|-||-- .+|.| |- -++-+..++.-
T Consensus 219 ~----t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~ 257 (438)
T 3nem_A 219 N----TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINY 257 (438)
T ss_dssp C----CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHH
T ss_pred C----CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHH
Confidence 3 6899888888764 56766 52 23445555543
No 43
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=28.30 E-value=22 Score=39.00 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcC--CCC--ccceecc-cccCcccccccCCCC---------CCCCcccccCcccCC
Q 004997 51 DSIRKRFLDFYASRGHKVLPSASLVP--EDP--TVLLTIA-GMLQFKPIFLGKVPR---------QVPRAATSQRCIRTN 116 (720)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~ssslvp--~Dp--tllFtnA-GM~qFkp~flG~~~p---------~~~r~~~~QkCiR~n 116 (720)
+.|.+.+-+||.++|...|..--+.+ ..+ .++-|+. | ++++|-+ .| ...|+-..-+|.|.-
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g----~~~~L~~-Spel~~~~l~~g~~rvf~ig~~FR~E 203 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFE----KRAYLAQ-SPQLYKQIMVGVFERVYEVAPVWRME 203 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC---------------------------------CHHHHHHHHHHHSEEEEEEEC----
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCC----CcEEeee-CHHHHHHHHhhCCCceeEEeCceECC
Confidence 35666788999999999887544444 121 1222221 1 1233321 11 135777888999985
Q ss_pred CccccCCCCCcccccccccC-CccC-cccHHHHHHHHHHHhhcc
Q 004997 117 DVENVGRTSRHHTFFEMLGN-FSFG-DYFKKEAIQWAWEFSTVE 158 (720)
Q Consensus 117 Dld~VG~t~rHhTfFEMLGn-~SFg-dYfK~eai~~awe~Lt~~ 158 (720)
+.+ ++||..=|-|+.- .+|. || +|.+..+.+++...
T Consensus 204 ~~~----~~RH~pEFtqle~e~~~~~d~--~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 204 EHH----TSRHLNEYLSLDVEMGFIADE--EDLMRLEEALLAEM 241 (422)
T ss_dssp -------------CCEEEEEEEESCSSH--HHHHHHHHHHHHHH
T ss_pred CCC----CCcccceeEEeeeeeeCCCCH--HHHHHHHHHHHHHH
Confidence 443 5799988888764 4555 65 66777666665443
No 44
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=28.17 E-value=22 Score=40.14 Aligned_cols=99 Identities=12% Similarity=0.172 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCCC---CccceecccccCc-ccccccCCCC---------CCCCcccccCcccCCCc
Q 004997 52 SIRKRFLDFYASRGHKVLPSASLVPED---PTVLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTNDV 118 (720)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~ssslvp~D---ptllFtnAGM~qF-kp~flG~~~p---------~~~r~~~~QkCiR~nDl 118 (720)
.|-+.+-+||.++|...|..--+.|.. ..=.|+.- .+.| ++++|-+.+- ...|+=..-+|.|.-++
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~-~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~ 259 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITY-HNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGI 259 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCC
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeee-cccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCC
Confidence 344456689999998888654444411 00111110 0112 1344443211 35678888999999644
Q ss_pred cccCCCCCccccccccc-CCccCccc-----HHHHHHHHHHHhh
Q 004997 119 ENVGRTSRHHTFFEMLG-NFSFGDYF-----KKEAIQWAWEFST 156 (720)
Q Consensus 119 d~VG~t~rHhTfFEMLG-n~SFgdYf-----K~eai~~awe~Lt 156 (720)
+ .||..=|-||= -.+|.||- -++-|..+|.-+.
T Consensus 260 ~-----trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 298 (521)
T 3bju_A 260 D-----LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT 298 (521)
T ss_dssp B-----TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-----CccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3 38999998886 47788873 3345555555443
No 45
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}
Probab=27.98 E-value=18 Score=37.82 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=52.0
Q ss_pred ccccccCCccCcccHHHHHHHHHHHhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCC
Q 004997 130 FFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 208 (720)
Q Consensus 130 fFEMLGn~SFgdYfK~eai~~awe~Lt~~l~i~~~rL-~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dNfW~~G~~G 208 (720)
++.|.|...|.-+ .+++.-+++-+.+..|++++.+ |+=.+....-..+-+.+.+|+|++++. |.+...|
T Consensus 220 ~~~~~g~~v~~~~--~~~~~~~i~~~l~~~gl~~~did~~~~Hq~~~~i~~~~~~~lgl~~~~~~--------~~l~~~G 289 (333)
T 4dfe_A 220 FLHMDGQAVFKLA--VNVLEKVAVEALEKANLSAEQIDWLIPHQANIRIMQSTCRKLGLPQERMI--------VTVGEHG 289 (333)
T ss_dssp SCEECHHHHHHHH--HHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHHHHHHHHHTTCCGGGBC--------CCHHHHC
T ss_pred ceeeccHHHHHHH--HHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHHHHHHhCCCHHHhh--------hhHHhcC
Confidence 6788887666421 2333334443445679999888 676777777777778888999999874 2233458
Q ss_pred CCCCceEEEe
Q 004997 209 PCGPCSEIYY 218 (720)
Q Consensus 209 pcGPcsEI~y 218 (720)
+||.+| |++
T Consensus 290 Nt~sas-i~~ 298 (333)
T 4dfe_A 290 NTSAAS-IPL 298 (333)
T ss_dssp BCGGGH-HHH
T ss_pred chHHHH-HHH
Confidence 888887 443
No 46
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=27.93 E-value=34 Score=27.50 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
-|++-++-..+.+.+.+|+|++.+||.+.
T Consensus 16 qK~~L~~~it~~l~~~lg~p~~~v~V~i~ 44 (72)
T 3mb2_A 16 QKAELARALSAAAAAAFDVPLAEVRLIIQ 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEE
Confidence 36677777788888999999999999775
No 47
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=27.92 E-value=30 Score=31.14 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhcccCCCCCceEEEEeC
Q 004997 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (720)
Q Consensus 144 K~eai~~awe~Lt~~l~i~~~rL~vTv~~ 172 (720)
|++-++-..+.|.+.||++++++||.+.+
T Consensus 81 K~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 81 KVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 88888888999999999999999998863
No 48
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=27.91 E-value=1.6e+02 Score=24.36 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=37.2
Q ss_pred CCCChHHHHHHHhhcCCChhhHHHHHHHcCC----ccChhhHHHHHHHHH
Q 004997 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQR 483 (720)
Q Consensus 438 ~~l~g~~af~LyDTyGfP~dlt~~ia~e~gl----~vD~~~F~~~m~~qk 483 (720)
..|+.+++-.++.+.|+|.+.+.+|.++... .||.++|...|....
T Consensus 25 G~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~ 74 (95)
T 1c07_A 25 GFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLIS 74 (95)
T ss_dssp SEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHH
T ss_pred CcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHH
Confidence 4799999999999999999888888776433 477889999886543
No 49
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=27.62 E-value=23 Score=39.33 Aligned_cols=84 Identities=18% Similarity=0.341 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCCCC---ccceecccccCc-ccccccCCCC--------CCCCcccccCcccCCCcc
Q 004997 52 SIRKRFLDFYASRGHKVLPSASLVPEDP---TVLLTIAGMLQF-KPIFLGKVPR--------QVPRAATSQRCIRTNDVE 119 (720)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~ssslvp~Dp---tllFtnAGM~qF-kp~flG~~~p--------~~~r~~~~QkCiR~nDld 119 (720)
+|-+.+-+||.++|...|..=-+.+.++ .-+|. .+-| ++++|-+.+- ...|+=..-+|.|.-++
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~---~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~~- 236 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFK---LQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQS- 236 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC------CCCCE---EEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSC-
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeecCCCCCcccccc---ccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecCCC-
Confidence 4555667899999988886543333111 11121 1112 2334433211 24677778899997543
Q ss_pred ccCCCCCcccccccccC-CccCcc
Q 004997 120 NVGRTSRHHTFFEMLGN-FSFGDY 142 (720)
Q Consensus 120 ~VG~t~rHhTfFEMLGn-~SFgdY 142 (720)
.|.||..=|-||-- .+|.||
T Consensus 237 ---~t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 237 ---RTVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp ---CCSSCCSEEEEEEEEEESCCH
T ss_pred ---CCCcchHHHHHhHHHHhcCCH
Confidence 37899988888764 567776
No 50
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=27.35 E-value=27 Score=26.51 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 144 KKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 144 K~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
|++-++-..+.|.+.||+|++++||.+.
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~ 46 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIE 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 5556677778888899999999999775
No 51
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=26.99 E-value=24 Score=39.71 Aligned_cols=97 Identities=16% Similarity=0.277 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC--CCC-ccceecccccCc-ccccccCCCC---------CCCCcccccCcccCCCc
Q 004997 52 SIRKRFLDFYASRGHKVLPSASLVP--EDP-TVLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTNDV 118 (720)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~ssslvp--~Dp-tllFtnAGM~qF-kp~flG~~~p---------~~~r~~~~QkCiR~nDl 118 (720)
.|-+.+-+||.++|...|..--|.+ .-. .=.|+.- .+.| ++++|-+++- ...|+=..-+|.|.-++
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~ 266 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI 266 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCC
Confidence 3445566899999988886544443 111 0112110 0111 2344433211 25677788899999665
Q ss_pred cccCCCCCcccccccccC-CccCcccHHHHHHHHHHHhh
Q 004997 119 ENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFST 156 (720)
Q Consensus 119 d~VG~t~rHhTfFEMLGn-~SFgdYfK~eai~~awe~Lt 156 (720)
+.||..=|-||.- .+|.|| ++.+..+-+++.
T Consensus 267 -----~~rH~pEFt~lE~e~af~d~--~dlm~l~E~li~ 298 (504)
T 1e1o_A 267 -----SVRHNPEFTMMELYMAYADY--HDLIELTESLFR 298 (504)
T ss_dssp -----CC-CCSEEEEEEEEEESCCH--HHHHHHHHHHHH
T ss_pred -----CccccCceeeeeeeecCCCH--HHHHHHHHHHHH
Confidence 2499999999874 677786 445555544443
No 52
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=26.89 E-value=24 Score=39.96 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC--CCCc-cceecccccCc-ccccccCCC---------CCCCCcccccCcccCCCc
Q 004997 52 SIRKRFLDFYASRGHKVLPSASLVP--EDPT-VLLTIAGMLQF-KPIFLGKVP---------RQVPRAATSQRCIRTNDV 118 (720)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~ssslvp--~Dpt-llFtnAGM~qF-kp~flG~~~---------p~~~r~~~~QkCiR~nDl 118 (720)
.|-+.+-+||.++|...|..=-+.+ ..-+ -.|+. -.+.| ++.||-+++ ....|+=..-+|.|.-++
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t-~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~ 287 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVT-HHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGV 287 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCC
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeccCCCCccccccc-ccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCC
Confidence 4445566899999988886544443 1110 11210 01112 233443321 135678888999999654
Q ss_pred cccCCCCCcccccccccC-CccCccc-----HHHHHHHHHHHh
Q 004997 119 ENVGRTSRHHTFFEMLGN-FSFGDYF-----KKEAIQWAWEFS 155 (720)
Q Consensus 119 d~VG~t~rHhTfFEMLGn-~SFgdYf-----K~eai~~awe~L 155 (720)
+ .||..=|-||-- .+|.||- -++-|..+|.-+
T Consensus 288 ~-----~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 325 (529)
T 4ex5_A 288 S-----PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDA 325 (529)
T ss_dssp B-----TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred C-----CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3 599999999764 5777863 234455555544
No 53
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=26.89 E-value=24 Score=39.56 Aligned_cols=98 Identities=11% Similarity=0.199 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCC--CC-ccceecccccCc-ccccccCCC---------CCCCCcccccCcccCCCc
Q 004997 52 SIRKRFLDFYASRGHKVLPSASLVPE--DP-TVLLTIAGMLQF-KPIFLGKVP---------RQVPRAATSQRCIRTNDV 118 (720)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~ssslvp~--Dp-tllFtnAGM~qF-kp~flG~~~---------p~~~r~~~~QkCiR~nDl 118 (720)
.|-+.+-+||.++|...|..--+.+. -. .-.|+-- .+.| ++++|-+++ ....|+=..-+|.|.-++
T Consensus 179 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~ 257 (493)
T 3a74_A 179 LIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGI 257 (493)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCCCC
Confidence 44456678999999888865444441 11 0112110 0111 233443221 135677788899999765
Q ss_pred cccCCCCCccccccccc-CCccCcccHHHHHHHHHHHhhc
Q 004997 119 ENVGRTSRHHTFFEMLG-NFSFGDYFKKEAIQWAWEFSTV 157 (720)
Q Consensus 119 d~VG~t~rHhTfFEMLG-n~SFgdYfK~eai~~awe~Lt~ 157 (720)
+ .||..=|-||. -.+|.|| ++.+..+-+++..
T Consensus 258 ~-----~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~~ 290 (493)
T 3a74_A 258 S-----TRHNPEFTMLELYEAYADF--RDIMKLTENLIAH 290 (493)
T ss_dssp B-----TTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred C-----cccCCceeEEEEEecCCCH--HHHHHHHHHHHHH
Confidence 3 49999999987 4677786 4555655555443
No 54
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=26.75 E-value=24 Score=40.14 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=23.9
Q ss_pred CcccccchHHHHHHHHhcCCCccccccc
Q 004997 262 KNIDTGLGLERIARILQKVPNNYETDLI 289 (720)
Q Consensus 262 k~IDTGmGLERl~~vlqg~~s~ydtD~F 289 (720)
+|=--|+|+|||++++-|.+|.=|+=+|
T Consensus 512 PhgG~GlGiDRLvMlltg~~nIRdVi~F 539 (548)
T 3i7f_A 512 PHAGCGIGLERITMLYLGIPNIRKVTLF 539 (548)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred CceEEEEcHHHHHHHHhCCccHHHhhcC
Confidence 4556799999999999999999887666
No 55
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=26.70 E-value=24 Score=38.79 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC---CCC-ccceecccccCc-ccccccCCCC--------CCCCcccccCcccCCCc
Q 004997 52 SIRKRFLDFYASRGHKVLPSASLVP---EDP-TVLLTIAGMLQF-KPIFLGKVPR--------QVPRAATSQRCIRTNDV 118 (720)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~ssslvp---~Dp-tllFtnAGM~qF-kp~flG~~~p--------~~~r~~~~QkCiR~nDl 118 (720)
.|-+.+-+||.++|...|..--+.+ ..- ..+-+|+ | ++++|-+.+- ...|+=..-+|.|.-|+
T Consensus 137 ~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~----~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~ 212 (435)
T 2xgt_A 137 AATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDY----FGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKS 212 (435)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEE----TTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSS
T ss_pred HHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeecc----CCcccccCCChHHHHHHhhhccCceEEEecceecCCC
Confidence 3445566899999988876433322 111 2222221 1 1233332211 24678888899998654
Q ss_pred cccCCCCCcccccccccC-CccCcccHHHHHHHHHHH
Q 004997 119 ENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEF 154 (720)
Q Consensus 119 d~VG~t~rHhTfFEMLGn-~SFgdYfK~eai~~awe~ 154 (720)
.|.||..=|-||-- .||.|| ++.++.+-++
T Consensus 213 ----~t~RH~~EFT~lE~e~af~d~--~d~m~~~E~l 243 (435)
T 2xgt_A 213 ----RTRRHLAEYAHVEAECPFITL--DDLMEKIEEL 243 (435)
T ss_dssp ----CCTTCCSEEEEEEEEEESCCH--HHHHHHHHHH
T ss_pred ----CccccccceeEEEEEEecCCH--HHHHHHHHHH
Confidence 36799988888764 677776 3344443333
No 56
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=26.57 E-value=24 Score=38.75 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC--CCC--ccceecccccCcccccccCCC--------CCCCCcccccCcccCCCcc
Q 004997 52 SIRKRFLDFYASRGHKVLPSASLVP--EDP--TVLLTIAGMLQFKPIFLGKVP--------RQVPRAATSQRCIRTNDVE 119 (720)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~ssslvp--~Dp--tllFtnAGM~qFkp~flG~~~--------p~~~r~~~~QkCiR~nDld 119 (720)
.|-+.+-+||.++|...|..--+.+ ..+ .++=|+.+= ++++|-+.+ ....|+-..-+|.|.-+.+
T Consensus 140 ~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~~~---~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~E~~~ 216 (434)
T 1x54_A 140 TLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFD---KYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSR 216 (434)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEETT---EEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEeecC---CcEEeccChHHHHHHHhcCccceEEEecceecCCCC
Confidence 4556788999999999887655544 222 112221100 123333111 0235788888999985432
Q ss_pred ccCCCCCcccccccccC-CccCcccHHHHHHHHHHHhhc
Q 004997 120 NVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFSTV 157 (720)
Q Consensus 120 ~VG~t~rHhTfFEMLGn-~SFgdYfK~eai~~awe~Lt~ 157 (720)
++||..=|-|+.- .+|.|| .|.+..+.+++..
T Consensus 217 ----~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 249 (434)
T 1x54_A 217 ----TRRHLTEFWHLELEAAWMDL--WDIMKVEEELVSY 249 (434)
T ss_dssp ----CSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred ----CcccccEEEEeeEEEcCCCH--HHHHHHHHHHHHH
Confidence 5699977877764 445564 6666666666543
No 57
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=25.80 E-value=40 Score=26.56 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 144 KKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 144 K~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
|++-++-..+.|.+.||+|++.+||.+.
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~ 46 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIID 46 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEE
Confidence 6677777888888999999999999775
No 58
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=25.74 E-value=26 Score=39.19 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.2
Q ss_pred CccCcccccchHHHHHHHHhcCCCccccccc
Q 004997 259 LKQKNIDTGLGLERIARILQKVPNNYETDLI 289 (720)
Q Consensus 259 Lp~k~IDTGmGLERl~~vlqg~~s~ydtD~F 289 (720)
+| +|=--|+|+|||+++|-|.+|.=|+=+|
T Consensus 449 ~P-PhgG~glGiDRLvmll~g~~~IRdVi~F 478 (487)
T 1eov_A 449 CP-PHAGGGIGLERVVMFYLDLKNIRRASLF 478 (487)
T ss_dssp CC-CEEEEEEEHHHHHHHHTTCSSGGGGCSS
T ss_pred CC-CCeEEEEhHHHHHHHHcCCCcHHheeec
Confidence 44 6777799999999999999998887555
No 59
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=25.30 E-value=38 Score=28.40 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=18.7
Q ss_pred HHHHHHhcCCCCCceeccCCCCCccCCC
Q 004997 178 FEIWNKEVGVPVEHIKRMGADDNFWNSG 205 (720)
Q Consensus 178 ~~iW~~~~g~~~~rI~~~~~~dNfW~~G 205 (720)
.+||.+.+|++ . ++.++||+++|
T Consensus 22 ~~i~~~vL~~~--~---i~~~~~Ff~lG 44 (93)
T 4i4d_A 22 AAIWAETLGRD--S---VGPHEDFAALG 44 (93)
T ss_dssp HHHHHHHHTCS--C---CCTTCCTTTTT
T ss_pred HHHHHHHhCCC--C---CCCCCCHHHcC
Confidence 67999999984 3 36789999988
No 60
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=25.09 E-value=3e+02 Score=29.15 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccc--------cCc----ccccccCC-----------------C
Q 004997 50 GDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGM--------LQF----KPIFLGKV-----------------P 100 (720)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~DptllFtnAGM--------~qF----kp~flG~~-----------------~ 100 (720)
-..|.+.+.+.|.+.|...|..-.+.|.+ +|.-+|- ... ..+.|... +
T Consensus 33 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~---l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~ 109 (401)
T 1evl_A 33 FRELEVFVRSKLKEYQYQEVKGPFMMDRV---LWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRD 109 (401)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH---HHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeeccHH---HHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhhhh
Confidence 45677888888999999999876666622 2221221 110 01112110 1
Q ss_pred CCCCCcccccCcccCCCc-cccCCCCCcccccccccCCccCcccH-----HHHHHHHHHHhhcccCCCCCceEEE
Q 004997 101 RQVPRAATSQRCIRTNDV-ENVGRTSRHHTFFEMLGNFSFGDYFK-----KEAIQWAWEFSTVEFGLPANRLWIS 169 (720)
Q Consensus 101 p~~~r~~~~QkCiR~nDl-d~VG~t~rHhTfFEMLGn~SFgdYfK-----~eai~~awe~Lt~~l~i~~~rL~vT 169 (720)
-| -|+...++|.|..-- +.-|.. |=+. |.|.+-++|++.-. +|.|..+++++. .|||++-++-+.
T Consensus 110 lP-~r~~~~g~~fR~E~~~p~~Gl~-R~re-F~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~-~lgl~~~~~~~~ 180 (401)
T 1evl_A 110 LP-LRMAEFGSCHRNEPSGSLHGLM-RVRG-FTQDDAHIFCTEEQIRDEVNGCIRLVYDMYS-TFGFEKIVVKLS 180 (401)
T ss_dssp CS-EEEEEEEEEECCCCGGGCBTTT-BCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-TTTCSCCEEEEE
T ss_pred CC-hhhccccceecCCCCccccccc-ccCc-EEecceEEeCCHHHHHHHHHHHHHHHHHHHH-HcCCCceEEEEe
Confidence 12 266778888886322 233422 3333 56888889986211 146888999985 699976665444
No 61
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=24.95 E-value=27 Score=23.68 Aligned_cols=10 Identities=60% Similarity=1.461 Sum_probs=7.7
Q ss_pred CCCCCCCCce
Q 004997 205 GATGPCGPCS 214 (720)
Q Consensus 205 G~~GpcGPcs 214 (720)
|+.||-|||.
T Consensus 19 gppgppgpcc 28 (31)
T 4gyx_A 19 GPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 6678888884
No 62
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.87 E-value=1.7e+02 Score=24.69 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=37.2
Q ss_pred CCCChHHHHHHHhhcCCChhhHHHHHHHcCC----ccChhhHHHHHHHH
Q 004997 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 482 (720)
Q Consensus 438 ~~l~g~~af~LyDTyGfP~dlt~~ia~e~gl----~vD~~~F~~~m~~q 482 (720)
..|+.+++-.+..+.|+|.+.+.+|.++... .||.++|...|...
T Consensus 26 G~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 26 GRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp SCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 4799999999999999999988888877433 48889999988543
No 63
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.83 E-value=1.5e+02 Score=24.27 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHhhcCCChhhHHHHHHHcCC----ccChhhHHHHHHHH
Q 004997 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 482 (720)
Q Consensus 438 ~~l~g~~af~LyDTyGfP~dlt~~ia~e~gl----~vD~~~F~~~m~~q 482 (720)
..|+.+++-.+.-+.|++.+.+.+|.++... .||.++|...|...
T Consensus 24 G~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~ 72 (92)
T 1fi6_A 24 GFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLV 72 (92)
T ss_dssp CEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence 4799999999999999999888888776433 47788999988644
No 64
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=23.24 E-value=30 Score=39.56 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=26.4
Q ss_pred CccCcccccchHHHHHHHHhcCCCcccccccH
Q 004997 259 LKQKNIDTGLGLERIARILQKVPNNYETDLIF 290 (720)
Q Consensus 259 Lp~k~IDTGmGLERl~~vlqg~~s~ydtD~F~ 290 (720)
+| +|=--|+|||||+++|-|.+|.=|+=.|.
T Consensus 525 ~P-PhgG~glGlDRLvmlltg~~sIRdVi~FP 555 (585)
T 1c0a_A 525 TP-PHAGLAFGLDRLTMLLTGTDNIRDVIAFP 555 (585)
T ss_dssp CC-CEEEEEEEHHHHHHHHHTCSCGGGGSSSC
T ss_pred CC-CceeEEEcHHHHHHHHcCCCcHHheecCC
Confidence 45 67778999999999999999998886664
No 65
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=22.88 E-value=31 Score=39.41 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=25.6
Q ss_pred CcccccchHHHHHHHHhcCCCcccccccH
Q 004997 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (720)
Q Consensus 262 k~IDTGmGLERl~~vlqg~~s~ydtD~F~ 290 (720)
+|=--|+|||||+++|-|.+|.=|+=.|.
T Consensus 521 PhgG~glGlDRLvMll~g~~sIRdVi~FP 549 (580)
T 1l0w_A 521 PHGGIAWGLDRLLALMTGSPSIREVIAFP 549 (580)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGGSSSC
T ss_pred CCceEEEcHHHHHHHHcCCCcHHeEecCC
Confidence 77788999999999999999998886664
No 66
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=22.30 E-value=48 Score=25.87 Aligned_cols=29 Identities=10% Similarity=-0.047 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEe
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~ 171 (720)
-|++-++-.-+.|.+.||+|++.+||.+.
T Consensus 15 qk~~L~~~it~~~~~~lg~p~~~v~V~i~ 43 (65)
T 3ry0_A 15 EVAALGEALTAAAHETLGTPVEAVRVIVE 43 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 36777777788898999999999999774
No 67
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=22.17 E-value=1.7e+02 Score=26.47 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=37.4
Q ss_pred CCCChHHHHHHHhhcCCChhhHHHHHHHcCC----ccChhhHHHHHHHH
Q 004997 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 482 (720)
Q Consensus 438 ~~l~g~~af~LyDTyGfP~dlt~~ia~e~gl----~vD~~~F~~~m~~q 482 (720)
..|+|++|-.++-.-|+|.+....|-+.... .+|.++|..+|.--
T Consensus 47 G~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li 95 (121)
T 3fia_A 47 GFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLI 95 (121)
T ss_dssp TBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred CeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 4799999999999999999999988777543 57788999988654
No 68
>2arh_A Hypothetical protein AQ_1966; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.46A {Aquifex aeolicus} SCOP: d.108.1.9
Probab=20.14 E-value=67 Score=31.61 Aligned_cols=41 Identities=32% Similarity=0.564 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCC
Q 004997 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVE 190 (720)
Q Consensus 143 fK~eai~~awe~Lt~~l~i~~~rL~vTv~~~D~e~~~iW~~~~g~~~~ 190 (720)
|-.++=++-+.+|-+.+| +|||+|+ .|.|++.--. .|+|+.
T Consensus 80 ~~s~~E~~ly~~ls~~lg----~lfVEY~-~D~ET~~~L~--~G~pp~ 120 (203)
T 2arh_A 80 FGSEAERKLYEFLSEHFG----RIFVEYF-EDKETTYELQ--KGVPPA 120 (203)
T ss_dssp TTSHHHHHHHHHHHTTCS----EEEEECT-TCHHHHHHHH--TTCCGG
T ss_pred cCCHHHHHHHHHHHHhcC----ceEEEEe-cCHHHHHHHH--cCCCcc
Confidence 444555666777776676 9999987 5566666555 488875
Done!