BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005000
         (720 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score = 1089 bits (2817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/724 (71%), Positives = 609/724 (84%), Gaps = 4/724 (0%)

Query: 1   MFSNSSISPPST---LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           M S +++SPP T      +TP +S I+TC+SM QLKQIHSQTI  GL++NP V  +++ F
Sbjct: 1   MISATTLSPPPTHLPSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAF 60

Query: 58  CCS-EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
           CC  E GDM+YA  VF  +P P+  +WN MIKGYSR+    + V +Y +ML+  V PD Y
Sbjct: 61  CCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEY 120

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           T+PFLLK FTRD AV+ G+ELH H++K GF S+VFVQNALI  Y L GEV +ARG+FD S
Sbjct: 121 TYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRS 180

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
            K DVVTWN M SGY R KQFDE+ KLF EMER  VLP+S+T+V VLSAC+KLKDL+VGK
Sbjct: 181 SKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGK 240

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
           R HRYVK+ KI P  +LENAL DMYAACG+M  AL IF N+K++DVISWTAIVTG+ N G
Sbjct: 241 RVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLG 300

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
           QV +AR YFD+MPERD+V WTAMIDGYL+VNRF+E L+LFREMQ +NI+PDEFT+VSILT
Sbjct: 301 QVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILT 360

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           ACA+LGALELGEW+K YIDKN++K D FVGNALIDMY  CG+VEKA R+F  M  +DK +
Sbjct: 361 ACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKIS 420

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           WTA+I GLAING+G+++LDMFSQML+ASI PDEVT +GVL ACTH+GMVD+G+++FA MT
Sbjct: 421 WTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMT 480

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
            QHGIEPN AHYGCMVDLLGRAGHL EA EVIKNMP+KPNSIVWG+LLGACRVHRD EMA
Sbjct: 481 TQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMA 540

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           EMAA+QILEL+P+N AVYVLLCNIYAACNRW+   E+R++++DRGIKKTPGCS+IEMNG 
Sbjct: 541 EMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGS 600

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKL 656
           VHEFVAGD+ HPQ+KEIY KLDEM+ DLKF GY PD SEVFLD+GEE+KE AVY+HSEKL
Sbjct: 601 VHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKL 660

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           A+AFGLISSGPGVTIRIVKNLRMCVDCH +AKLVS VY+REVIVRD+TRFHHF+HGSCSC
Sbjct: 661 AIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSC 720

Query: 717 KDYW 720
           KDYW
Sbjct: 721 KDYW 724


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score = 1082 bits (2797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/716 (68%), Positives = 604/716 (84%), Gaps = 6/716 (0%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKGD 64
           S SPP+      PLIS +ETCESM QL+Q+H Q IK GL  NP +QN+++TFCC+ E GD
Sbjct: 13  SFSPPTH-----PLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGD 67

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
            +YA ++F +IP P++ +WNTMI+GYSR+D  + GV +YL+ML+  V+PD YTFPFL KG
Sbjct: 68  FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKG 127

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
           FTRDIA+E+G++LH HVLK G   +VFV  AL+  Y LCG++D ARG+FDV  K DV+TW
Sbjct: 128 FTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITW 187

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N + S Y +V +F+E+R+LF  ME K VLPT+VT+VLVLSAC+KLKDL  GK+ H YVK 
Sbjct: 188 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 247

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
           CK+  NL+LENA+ DMYA CGEM  AL IF ++ N+D+ISWT IV+G+ N G++D+AR Y
Sbjct: 248 CKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNY 307

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           FD+MPE+DYV WTAMIDGY+R NRF+EAL LFR MQ +N++PDEFT+VS+LTACA+LGAL
Sbjct: 308 FDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGAL 367

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           ELGEW++TYID+NK+KND+FV NALIDMY KCGDV+KA+ +FREM ++DKFTWTAMIVGL
Sbjct: 368 ELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGL 427

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A+NGHG+K+LDMFS ML+ASI+PDE+TY+GVLSACTHTG+VD+GR+YF  MT QHGIEPN
Sbjct: 428 AVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPN 487

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
            AHYGC+VDLL RAG L EA EVI+NMP+K NSIVWGALL  CRV+R+++MAEM  KQIL
Sbjct: 488 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL 547

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           EL+PDN AVYVLLCNIYAAC RW++ RELRQM++D+GIKKTPGCS+IEMNG VHEFVAGD
Sbjct: 548 ELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGD 607

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           +SHPQTK I  KLD+MT DLK  GY PDISEVFLD+ EEDKE +V++HSEKLA+AFGLI+
Sbjct: 608 RSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLIN 667

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S PGVTIRI KNLRMC+DCH MAKLVS VY+REVIVRD+TRFHHFKHG CSCKDYW
Sbjct: 668 SPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score = 1078 bits (2789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/716 (68%), Positives = 603/716 (84%), Gaps = 6/716 (0%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKGD 64
           S SPP+      PLIS +ETCESM QL+Q+H Q IK GL  NP +QN+++TFCC+ E GD
Sbjct: 34  SFSPPTH-----PLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGD 88

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
            +YA ++F +IP P++ +WNTMI+GYSR+D  + GV +YL+ML+  V+PD YTFPFL KG
Sbjct: 89  FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKG 148

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
           FTRDIA+E+G++LH HVLK G   +VFV  AL+  Y LCG++D ARG+FDV  K DV+TW
Sbjct: 149 FTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITW 208

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N + S Y +V +F+E+R+LF  ME K VLPT+VT+VLVLSAC+KLKDL  GK+ H YVK 
Sbjct: 209 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 268

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
           CK+  NL+LENA+ DMYA CGEM  AL IF ++ N+D+ISWT IV+G+ N G++D+AR Y
Sbjct: 269 CKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNY 328

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           FD+MPE+DYV WTAMIDGY+R NRF+EAL LFR MQ +N++PDEFT+VS+LTACA+LGAL
Sbjct: 329 FDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGAL 388

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           ELGEW++TYID+NK+KND+FV NALIDMY KCGDV+KA+ +FREM ++DKFTWTAMIVGL
Sbjct: 389 ELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGL 448

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A+NGHG+K+LDMFS ML+ASI+PDE+TY+GVLSACTHTG+VD+GR+YF  MT QHGIEPN
Sbjct: 449 AVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPN 508

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
            AHYGC+VDLL RAG L EA EVI+NMP+K NSIVWGALL  CRV+R+++MAEM  KQIL
Sbjct: 509 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL 568

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           EL+PDN AVYVLLCNIYAAC RW++ RELRQM++D+GIKK PGCS+IEMNG VHEFVAGD
Sbjct: 569 ELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGD 628

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           +SHPQTK I  KLD+MT DLK  GY PDISEVFLD+ EEDKE +V++HSEKLA+AFGLI+
Sbjct: 629 RSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLIN 688

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S PGVTIRI KNLRMC+DCH MAKLVS VY+REVIVRD+TRFHHFKHG CSCKDYW
Sbjct: 689 SPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score = 1041 bits (2693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/706 (67%), Positives = 595/706 (84%), Gaps = 2/706 (0%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKGDMKYACKVFRK 74
           E+P IS +E C+SM+QLKQIHS TIK+GL ++P  Q +++ FCC+ E G M YA +VF  
Sbjct: 8   ESP-ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDA 66

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           IP+P++ +WNTMIKGYSRI+  +NGV +YL ML S+++PD +TFPFLLKGFTR++A+++G
Sbjct: 67  IPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYG 126

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K L  H +K GFDS++FVQ A I  + LC  VD+AR +FD+    +VVTWN M SGY RV
Sbjct: 127 KVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRV 186

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
           KQF +++ LF EME++GV P SVT+VL+LSAC+KLKDL+ GK  ++Y+    +  NLILE
Sbjct: 187 KQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILE 246

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N L DM+AACGEM  A  +F N+KN+DVISWT+IVTG+ N GQ+D+AR+YFDQ+PERDYV
Sbjct: 247 NVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYV 306

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            WTAMIDGYLR+NRF EAL LFREMQ SN++PDEFT+VSILTACA+LGALELGEWVKTYI
Sbjct: 307 SWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYI 366

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           DKN +KND FVGNALIDMY KCG+V KA++VF+EM  KDKFTWTAMIVGLAINGHG+++L
Sbjct: 367 DKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEAL 426

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            MFS M+ ASI PDE+TY+GVL ACTH GMV++G+ +F  MT+QHGI+PN  HYGCMVDL
Sbjct: 427 AMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDL 486

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L EA EVI NMP+KPNSIVWG+LLGACRVH++ ++AEMAAKQILEL+P+N AVY
Sbjct: 487 LGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVY 546

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLLCNIYAAC RW+N R++R+++++RGIKKTPGCS++E+NG V+EFVAGD+SHPQ+KEIY
Sbjct: 547 VLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIY 606

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
            KL+ M  DL   GY PD SEVFLD+GEEDKE A+Y+HSEKLA+A+ LISSGPG+TIRIV
Sbjct: 607 AKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIV 666

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLRMCVDCH MAKLVS  Y+RE+IVRDKTRFHHF+HGSCSC ++W
Sbjct: 667 KNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  985 bits (2546), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/724 (64%), Positives = 586/724 (80%), Gaps = 13/724 (1%)

Query: 2   FSNSSISP-PSTLTQETPL-------ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNK 53
           F N S+S     +   TPL       IS +ETC +M+++ QIHSQTIK GL +N     K
Sbjct: 13  FPNLSLSLFLKRMISNTPLHSFVKSPISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTK 72

Query: 54  LVTFCCS-EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112
           ++ FCC+ E GD+ YA KVF +IP+PSV +WNTMIKGYSRI+  ++GV +Y  ML  +++
Sbjct: 73  VIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIK 132

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF-DSSVFVQNALISTYCLCGEVDMARG 171
           PD +TFPFLLKGFT+D+A+++GK L  H +  GF DS++FVQ   I  + LCG V+ AR 
Sbjct: 133 PDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARK 192

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG--VLPTSVTIVLVLSACAKL 229
           IFD+    +VVTWN + SGY R K+++E+++LF EME+K   V P SVT+VL+LSAC+KL
Sbjct: 193 IFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKL 252

Query: 230 KDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           KDL  GK  + +Y+KE  + PNLILENAL DM+A+CGEM  A  +F  +K +DVISWT+I
Sbjct: 253 KDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSI 312

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           VTG+ N  ++D+AR+YFDQMPERDYV WTAMIDGYLR+NRF+E LTLFR+MQ SN++PDE
Sbjct: 313 VTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDE 372

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
           FT+VSILTACA+LGALELGEW KTYIDKNK+KND F+GNALIDMY KCG+VEKA+++F E
Sbjct: 373 FTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNE 432

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M +KDKFTWTAMIVGLA NGHG+++L MFS ML AS+ PDE+TY+GV+ ACTH G+V +G
Sbjct: 433 MQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKG 492

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           + +F++M +QHGI+PN  HYGCMVDLLGRAGHL EALEVI NMP+KPNSIVWG+LLGACR
Sbjct: 493 KHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACR 552

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
           VH++ ++AEMAA +ILEL+P+N AVYVLLCNIYAAC +W N   +R+M+++RGIKK PGC
Sbjct: 553 VHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGC 612

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERA 648
           S++EMNG+V+EFVAGDKSHPQ+KEIY KL+ M  DL   GY PD SEVFLDVGEEDKE A
Sbjct: 613 SLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETA 672

Query: 649 VYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHH 708
           +Y HSEKLA+A+ LISSG GVTIRIVKNLRMCVDCH MA +VS VY+RE+IVRDKTRFHH
Sbjct: 673 LYMHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHH 732

Query: 709 FKHG 712
           F+HG
Sbjct: 733 FRHG 736


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  867 bits (2240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/706 (60%), Positives = 528/706 (74%), Gaps = 64/706 (9%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKGDMKYACKVFRK 74
           E+P IS +E C+SM+QLKQIHS TIK+GL ++P  +N+++ FCC+ E G+M YA +VF  
Sbjct: 8   ESP-ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDT 66

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           IP PS+ +WNTMIKGYS+I   +NGV +YL ML S+++PD +TFPF LKGFTRD+A++ G
Sbjct: 67  IPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHG 126

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           KEL  H +K GFDS++FVQ A I  + LCG VD+A  +FD+    +VVTWN M SGY RV
Sbjct: 127 KELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRV 186

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
           KQF  ++ L                 LVLSAC+KLKDL+ GK   +Y+         I+E
Sbjct: 187 KQFKISKML-----------------LVLSACSKLKDLEWGKHIFKYIN------GGIVE 223

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           +    M+AACGEM                               D A+  FD M  RD V
Sbjct: 224 H----MFAACGEM-------------------------------DEAQGVFDNMKTRDVV 248

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            WTAMIDGYLR+N F  AL LFREMQ SN++PDEFT+VSIL ACA LGALELGEWVKT I
Sbjct: 249 SWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCI 308

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           DKN  KND FVGNAL+DMY KCG+V KA++VF+EM +KDKFTWT MIVGLAINGHG+++L
Sbjct: 309 DKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEAL 368

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            MFS M+ AS+ PDE+TY+GVL AC    MVD+G+ +F +MT+QHGI+P   HYGCMVDL
Sbjct: 369 AMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDL 424

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LG  G L EALEVI NMP+KPNSIVWG+ LGACRVH++ ++A+MAAKQILEL+P+N AVY
Sbjct: 425 LGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVY 484

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLLCNIYAA  +W+N  ++R+++++RGIKKTPGCS++E+NG V+EFVAGD+SHPQ+KEIY
Sbjct: 485 VLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIY 544

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
            KL+ M   L   GY PD SEVFLD+GEEDKE A+Y+HSEKLA+A+ LISSGPGVTIRIV
Sbjct: 545 AKLENMMQGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIV 604

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLRMCVDCH MAKLVS  Y+RE+IV+DKTRFHHF+HGSCSC ++W
Sbjct: 605 KNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  817 bits (2111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/605 (64%), Positives = 472/605 (78%), Gaps = 19/605 (3%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCL--CGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H   +K G   +  +QN ++S  C    G++  AR +FD   +  V +WN MF GY 
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYS 90

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           R+        L+ EM  + V P   T   +     +   L +G+  H +V +  +  N+ 
Sbjct: 91  RIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVF 150

Query: 253 LENALTDMYAACGEMGFALEIFG-----------------NIKNKDVISWTAIVTGYINR 295
             NAL +MY+ CG +  A  IF                  N   KDVISWTAIVTG++N 
Sbjct: 151 AHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNT 210

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           GQVD AR+YF +MPERD+V WTAMIDGYLR+N ++EAL LFREMQTS I+PDEFT+VS+L
Sbjct: 211 GQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVL 270

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
           TACA LGALELGEW++TYIDKNKVKND FVGNALIDMY KCG+VE A  +F  + ++DKF
Sbjct: 271 TACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKF 330

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           TWTAM+VGLAING G+++L+MFSQML+AS+ PDEVTYVGVLSACTHTGMVDEG+++FA M
Sbjct: 331 TWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASM 390

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535
           T +HGIEPN AHYGCMVDLLG+AGHL EA E+IKNMPMKPNSIVWGALLGACR+H+DAEM
Sbjct: 391 TARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEM 450

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
           AE A +QILEL+P+N AVYVL CNIYAACN+WD  RELRQ+++DRGIKKTPGCS+IEMNG
Sbjct: 451 AERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNG 510

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
           +VHEFVAGD+SHPQTKEIY KL++MTSDLK  GY P+ SEVFLD+ EEDKE AVY+HSEK
Sbjct: 511 IVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEK 570

Query: 656 LAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715
           LA+AFGLI+SGPGVTIRIVKNLRMC+DCH +AKLVS VYDREVIVRD+TRFHHF+HGSCS
Sbjct: 571 LAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCS 630

Query: 716 CKDYW 720
           CKDYW
Sbjct: 631 CKDYW 635



 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 188/523 (35%), Positives = 279/523 (53%), Gaps = 88/523 (16%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKGDMKYAC 69
           S+   E P +S  ETC+SM+ LKQIHS+TIK G++ NP +QNK+++FCCS E GDM YA 
Sbjct: 9   SSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYAR 68

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           ++F  IP PSV  WN M KGYSRI   K GV +YL+ML+ +V+PD YT+PFL KGFTR +
Sbjct: 69  QLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSV 128

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A++ G+ELHCHV+K+G DS+VF  NALI+ Y LCG +DMARGIFD+S K DVVTWNAM S
Sbjct: 129 ALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMIS 188

Query: 190 GYKRVK-----------------QFDETRK------------------------------ 202
           GY R+K                 Q D  RK                              
Sbjct: 189 GYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEAL 248

Query: 203 -LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
            LF EM+   + P   T+V VL+ACA+L  L++G+    Y+ + K+  +  + NAL DMY
Sbjct: 249 MLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMY 308

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
             CG +  AL IF  +  +D  +WTA+V G    G  +                      
Sbjct: 309 FKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGE---------------------- 346

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVK 380
                    EAL +F +M  +++ PDE T V +L+AC + G ++ G ++  +   ++ ++
Sbjct: 347 ---------EALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIE 397

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
            +I     ++D+  K G +++A  + + M ++ +   W A++    I+   + +     Q
Sbjct: 398 PNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQ 457

Query: 440 MLRASIIPDE----VTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           +L   + P+     V    + +AC     + E R+   D  I+
Sbjct: 458 ILE--LEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIK 498


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/651 (58%), Positives = 490/651 (75%), Gaps = 11/651 (1%)

Query: 11  STLTQE-----TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE-KGD 64
           ST+T+      +  IS +  C++  Q KQ+HSQ+I  G+  NPT Q KL  F CS   G 
Sbjct: 24  STITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGH 83

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + YA K+F KIP P V +WN MIKG+S++D    GV +YL+MLK  V PD++TFPFLL G
Sbjct: 84  VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNG 143

Query: 125 FTRDI-AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
             RD  A+  GK+LHCHV+KFG  S+++VQNAL+  Y LCG +DMARG+FD   K+DV +
Sbjct: 144 LKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS 203

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           WN M SGY R+K+++E+ +L  EMER  V PTSVT++LVLSAC+K+KD D+ KR H YV 
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVS 263

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           ECK  P+L LENAL + YAACGEM  A+ IF ++K +DVISWT+IV GY+ RG + +AR 
Sbjct: 264 ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLART 323

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           YFDQMP RD + WT MIDGYLR   F E+L +FREMQ++ + PDEFT+VS+LTACA+LG+
Sbjct: 324 YFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGS 383

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           LE+GEW+KTYIDKNK+KND+ VGNALIDMY KCG  EKAQ+VF +M ++DKFTWTAM+VG
Sbjct: 384 LEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVG 443

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
           LA NG G +++ +F QM   SI PD++TY+GVLSAC H+GMVD+ R++FA M   H IEP
Sbjct: 444 LANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEP 503

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
           +  HYGCMVD+LGRAG + EA E+++ MPM PNSIVWGALLGA R+H D  MAE+AAK+I
Sbjct: 504 SLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKI 563

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           LEL+PDN AVY LLCNIYA C RW + RE+R+ I+D  IKKTPG S+IE+NG  HEFVAG
Sbjct: 564 LELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAG 623

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
           DKSH Q++EIY+KL+E+  +  F  Y+PD SE+  + G ++ E    +HS+
Sbjct: 624 DKSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFEAGNKELE----EHSQ 670


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/639 (58%), Positives = 484/639 (75%), Gaps = 7/639 (1%)

Query: 11  STLTQE-----TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE-KGD 64
           ST+T+      +  IS +  C++  Q KQ+HSQ+I  G+  NPT Q KL  F CS   G 
Sbjct: 24  STITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGH 83

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + YA K+F KIP P V +WN MIKG+S++D    GV +YL+MLK  V PD++TFPFLL G
Sbjct: 84  VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNG 143

Query: 125 FTRDI-AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
             RD  A+  GK+LHCHV+KFG  S+++VQNAL+  Y LCG +DMARG+FD   K+DV +
Sbjct: 144 LKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS 203

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           WN M SGY R+K+++E+ +L  EMER  V PTSVT++LVLSAC+K+KD D+ KR H YV 
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVS 263

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           ECK  P+L LENAL + YAACGEM  A+ IF ++K +DVISWT+IV GY+ RG + +AR 
Sbjct: 264 ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLART 323

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           YFDQMP RD + WT MIDGYLR   F E+L +FREMQ++ + PDEFT+VS+LTACA+LG+
Sbjct: 324 YFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGS 383

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           LE+GEW+KTYIDKNK+KND+ VGNALIDMY KCG  EKAQ+VF +M ++DKFTWTAM+VG
Sbjct: 384 LEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVG 443

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
           LA NG G +++ +F QM   SI PD++TY+GVLSAC H+GMVD+ R++FA M   H IEP
Sbjct: 444 LANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEP 503

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
           +  HYGCMVD+LGRAG + EA E+++ MPM PNSIVWGALLGA R+H D  MAE+AAK+I
Sbjct: 504 SLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKI 563

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           LEL+PDN AVY LLCNIYA C RW + RE+R+ I+D  IKKTPG S+IE+NG  HEFVAG
Sbjct: 564 LELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAG 623

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           DKSH Q++EIY+KL+E+  +  F  Y+PD SE+  + G+
Sbjct: 624 DKSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFEAGD 662


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/629 (53%), Positives = 455/629 (72%), Gaps = 7/629 (1%)

Query: 97  KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI----AVEFGKELHCHVLKFGFDSSVFV 152
           ++ V  Y  ML    RPD YTFP LLK   R      +    + +H HV++ G   +  V
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            ++L++ Y   G+   AR +  V   D  V WNA+ SG+ R  +F E+   F +M R G 
Sbjct: 61  ASSLVAAYTAGGDGAAARAL--VGECDTPVAWNALISGHNRGGRFGESCGSFVDMARAGA 118

Query: 213 LPTSVTIVLVLSACAK-LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
            PT VT V VLSAC K  +D+ +G + H  V    ++P+L +ENAL DMYA C +MG A 
Sbjct: 119 APTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAW 178

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           ++F  ++ + V+SWT++++G    GQVD AR  FD+MPERD V WTAMIDGY+   RFRE
Sbjct: 179 KVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFRE 238

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL +FREMQ SN+  DEFT+VS++TACA LGALE+GEWV+ Y+ +  +K D FVGNALID
Sbjct: 239 ALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALID 298

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCG +E+A  VF+ M  +DKFTWTA+I+GLA+NG+ +++++MF +M+R S  PDEVT
Sbjct: 299 MYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVT 358

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           ++GVL+ACTH G+VD+GRE+F  M   + I PN  HYGC++DLLGRAG + EAL+ I  M
Sbjct: 359 FIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQM 418

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           PM PNS +WG LL ACRVH ++E+ E+ A+++LELDP+N  VY+LL NIYA CNRW++ R
Sbjct: 419 PMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVR 478

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            LR  I+++GIKK PGCS+IEM+G++HEFVAGD+SHP +KEIY KL+ + SDL  VGY P
Sbjct: 479 RLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFP 538

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           D++EVF++V E++K++ +Y HSEKLA+AF L+SS P   IRIVKNLRMC+DCH   KL+S
Sbjct: 539 DVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLIS 598

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +Y REV+VRD+TRFHHF+HG CSCKDYW
Sbjct: 599 RLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 141/350 (40%), Gaps = 37/350 (10%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR-------------------- 73
           Q+H + +  G+L +  V+N LV    +E  DM  A KVF                     
Sbjct: 144 QVHGRVVGSGVLPDLRVENALVDMY-AECADMGSAWKVFDGMQVRSVVSWTSLLSGLARL 202

Query: 74  -----------KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
                      ++P      W  MI GY      +  + ++ +M  S+V  D +T   ++
Sbjct: 203 GQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVI 262

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
               +  A+E G+ +  ++ + G     FV NALI  Y  CG ++ A  +F   +  D  
Sbjct: 263 TACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKF 322

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           TW A+  G       +E  ++F  M R    P  VT + VL+AC     +D G+     +
Sbjct: 323 TWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSM 382

Query: 243 KEC-KIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDM 300
            E   I PN++    + D+    G++  AL+    +    +   W  ++      G  ++
Sbjct: 383 IEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEI 442

Query: 301 ARQYFDQMPERD---YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
                +++ E D    +++  + + Y + NR+ +   L   +    I+ +
Sbjct: 443 GELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKE 492


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/639 (52%), Positives = 457/639 (71%), Gaps = 4/639 (0%)

Query: 86  MIKGYSR---IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           +++G  R   + + ++ V  Y  ML     PD YTFP LLK   R  +    + +H HV+
Sbjct: 11  LLEGIPRRCLVAAREDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVV 70

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           KFG   +  V  +L++ Y   G+   AR +     +D  V WNA+ SG+ R ++F E   
Sbjct: 71  KFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACC 130

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAK-LKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
            F +M R G  PT VT V VLSAC K   D+ +G + H  V    ++P+L +ENAL DMY
Sbjct: 131 SFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMY 190

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           A C +M  A ++F  ++ + V+SWT++++G    G+VD AR  F +MPERD V WTAMID
Sbjct: 191 AECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMID 250

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           GY++  RFREAL +FREMQ SN+  DEFT+VS++TACA LGALE+GEWV+ Y+ +  +K 
Sbjct: 251 GYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKM 310

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
           D FVGNALIDMY KCG +E+A  VF++M  +DKFTWTA+I+GLA+NG+G+++++MF +M+
Sbjct: 311 DAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMI 370

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
             S  PDEVT++GVL+ACTH G+VD+GRE+F  M   + I PN  HYGC++DL GRAG +
Sbjct: 371 GVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKI 430

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
            EAL+ I  MPM PNS +WG LL ACRVH ++E+ E+  +++L++DP+N  VY LL NIY
Sbjct: 431 TEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIY 490

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMT 621
           A CNRW++ R LR  I+++GIKK PGCS+IEMNG++HEFVAGD+SHP +KEIY KL+ + 
Sbjct: 491 AKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESII 550

Query: 622 SDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCV 681
           +DL  VGY PD++EVF++V EE+K++ ++ HSEKLA+AF L+SS P   IRIVKNLRMC+
Sbjct: 551 NDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCL 610

Query: 682 DCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           DCH   KL+S +Y REV+VRD+TRFHHF+HG CSCKDYW
Sbjct: 611 DCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 203/474 (42%), Gaps = 68/474 (14%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           PL+  +    S   ++ +H+  +K G+  N  V   LVT   +          +  +  R
Sbjct: 48  PLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAAR-ALLSERER 106

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-VEFGKE 136
            +  +WN +I G++R          ++DM ++   P   T+  +L    +    V  G +
Sbjct: 107 DTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQ 166

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLC-------------------------------GE 165
           +H  V+  G    + V+NAL+  Y  C                               G 
Sbjct: 167 VHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGR 226

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           VD AR +F    + D V+W AM  GY +  +F E  ++F EM+   V     T+V V++A
Sbjct: 227 VDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITA 286

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           CA+L  L++G+    Y+    I  +  + NAL DMY+ CG +  AL++F ++ ++D  +W
Sbjct: 287 CAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTW 346

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           TAI+ G                            ++GY       EA+ +F  M   +  
Sbjct: 347 TAIILGL--------------------------AVNGY-----GEEAIEMFHRMIGVSET 375

Query: 346 PDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           PDE T + +LTAC + G ++ G E+  +  +   +  ++     +ID++ + G + +A  
Sbjct: 376 PDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALD 435

Query: 405 VFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
              +M +  +   W  ++    ++G+ +    +  ++L+    P+  T   +LS
Sbjct: 436 AIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMD--PENSTVYTLLS 487



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 143/350 (40%), Gaps = 37/350 (10%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR-------------------- 73
           Q+H + +  G+L +  V+N LV    +E  DM+ A K+F                     
Sbjct: 166 QVHGRVVGSGVLPDLRVENALVDMY-AECADMESAWKLFDGMQVRSVVSWTSLLSGLTRL 224

Query: 74  -----------KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
                      ++P      W  MI GY +    +  + ++ +M  S+V  D +T   ++
Sbjct: 225 GRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVI 284

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
               +  A+E G+ +  ++ + G     FV NALI  Y  CG ++ A  +F   +  D  
Sbjct: 285 TACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKF 344

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           TW A+  G       +E  ++F  M      P  VT + VL+AC     +D G+     +
Sbjct: 345 TWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSM 404

Query: 243 KEC-KIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDM 300
           +E   I PN++    + D++   G++  AL+    +    +   W  ++      G  ++
Sbjct: 405 RETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEI 464

Query: 301 AR---QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
                +   QM   +  ++T + + Y + NR+ +   L   +    I+ +
Sbjct: 465 GELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKE 514


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/641 (52%), Positives = 453/641 (70%), Gaps = 11/641 (1%)

Query: 91  SRIDSH--KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE-----LHCHVLK 143
           S +  H  +  V  Y+ ML    RPD YTFP LLK                  +H HV+K
Sbjct: 25  SSVSGHGAEEAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVK 84

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFD----VSYKDDVVTWNAMFSGYKRVKQFDE 199
           FG +S+    ++LI  Y   G+   AR + +     +     V WNA+ SG+ R  +F+ 
Sbjct: 85  FGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFEL 144

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
           +   F +M R   + T+VT V VLSAC K KDL +G + H+ V E  ++P+  +ENAL D
Sbjct: 145 SCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVD 204

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA CG+M  A  +F  ++ + + SWT++++G +  GQVD AR  FD MPERD + WTAM
Sbjct: 205 MYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAM 264

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           IDGY++V RFR+AL  FR MQ   +R DEFT+VS++TACA LGALE GEW + Y+ +  +
Sbjct: 265 IDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGI 324

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
           K D+FVGNALIDMY KCG +E+A  VF++M  +DKFTWTA+I+GLA+NG G++++DMF +
Sbjct: 325 KMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYR 384

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           MLRA   PDEVT+VGVL+ACTH G+VD+GRE+F  MT  + I P   HYGC++D+LGRAG
Sbjct: 385 MLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAG 444

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
            L EAL+ I  MPMKPNS +WG LL +CRV+ ++E+ E+AA+++LELDPDN   Y+LL N
Sbjct: 445 KLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSN 504

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           +YA  NRW + R +RQ+I+++GIKK PGCSMIEMNG++HEFVA D+SHP  KEIY KL+ 
Sbjct: 505 MYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKEIYSKLEN 564

Query: 620 MTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
           + +DL+  GY+PD++EV ++V EE+K++ +Y HSEKLA+ F L++S   V IRIVKNLRM
Sbjct: 565 VLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESNVIIRIVKNLRM 624

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C+DCH   KL+S +Y REVIVRD+TRFHHF+HGSCSCKDYW
Sbjct: 625 CLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/433 (23%), Positives = 186/433 (42%), Gaps = 67/433 (15%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR---KIPRPSVCLWNTMIKGYS 91
           IH+  +K G+ +N    + L+    +          +          +  +WN +I G++
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           R    +     ++DM+++       T+  +L    +   +  G ++H  VL+ G      
Sbjct: 138 RSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQR 197

Query: 152 VQNALISTYCLC-------------------------------GEVDMARGIFDVSYKDD 180
           V+NAL+  Y  C                               G+VD AR +FD   + D
Sbjct: 198 VENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERD 257

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
            + W AM  GY +V +F +  + F  M+   V     T+V V++ACA+L  L+ G+ A  
Sbjct: 258 TIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARI 317

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           Y+    I  ++ + NAL DMY+ CG +  AL++F ++ N+D  +WTAI+ G    G+ + 
Sbjct: 318 YMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEE 377

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           A                  ID + R         + R +QT    PDE T V +LTAC +
Sbjct: 378 A------------------IDMFYR---------MLRALQT----PDEVTFVGVLTACTH 406

Query: 361 LGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWT 418
            G ++ G E+  +  +   +   +     LID+  + G +++A     +M ++ +   W 
Sbjct: 407 AGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWG 466

Query: 419 AMIVGLAINGHGD 431
            ++    + G+ +
Sbjct: 467 TLLASCRVYGNSE 479



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 144/363 (39%), Gaps = 46/363 (12%)

Query: 11  STLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           S +      +S +  C     L    Q+H + ++ G+L +  V+N LV    +E GDM  
Sbjct: 156 SAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMY-AECGDMDA 214

Query: 68  ACKVFR-------------------------------KIPRPSVCLWNTMIKGYSRIDSH 96
           A  +F                                 +P      W  MI GY ++   
Sbjct: 215 AWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRF 274

Query: 97  KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
           ++ +  +  M    VR D +T   ++    +  A+E G+    ++ + G    VFV NAL
Sbjct: 275 RDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNAL 334

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           I  Y  CG ++ A  +F   +  D  TW A+  G     + +E   +F  M R    P  
Sbjct: 335 IDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDE 394

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILENALTDMYAACGEMGFALEIFG 275
           VT V VL+AC     +D G+     + E   I P ++    L D+    G++  AL+   
Sbjct: 395 VTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTID 454

Query: 276 NIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTAMIDGYLRVNR 328
            +  K +   W  ++      G  ++     +++ E D      Y+L + M   Y + NR
Sbjct: 455 KMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNM---YAKSNR 511

Query: 329 FRE 331
           +++
Sbjct: 512 WKD 514


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/707 (46%), Positives = 465/707 (65%), Gaps = 4/707 (0%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIP 76
           P +S I+ C    QLKQIH+Q ++ GL  +P   ++L+T    S    + YA +VF +IP
Sbjct: 37  PTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIP 96

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
            P++  WNT+I+ Y+   +    +LI+L ML +S   PD +TFPFL+K  +    +  GK
Sbjct: 97  HPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGK 156

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
             H  V+K    S VF+ N+LI  Y  CGE+ +   +F    + DVV+WN+M + + +  
Sbjct: 157 AFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGG 216

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
             +E  +LF EME + V P  +T+V VLSACAK  D + G+  H Y++  +I  +L L N
Sbjct: 217 CPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSN 276

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           A+ DMY  CG +  A  +F  +  KD++SWT ++ GY   G+ D A+  FD MP +D   
Sbjct: 277 AMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAA 336

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNI-RPDEFTIVSILTACANLGALELGEWVKTYI 374
           W A+I  Y +  + +EAL LF E+Q S   +PDE T+VS L+ACA LGA++LG W+  YI
Sbjct: 337 WNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYI 396

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K  +K +  +  +LIDMYCKCGD++KA  VF  + RKD F W+AMI GLA++GHG  ++
Sbjct: 397 KKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAI 456

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            +FS+M    + P+ VT+  +L AC+H G+V+EGR +F  M + +G+ P   HY CMVD+
Sbjct: 457 ALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDI 516

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L EA+E+I+ MPM P + VWGALLGAC +H +  +AE A  Q++EL+P N   Y
Sbjct: 517 LGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAY 576

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL NIYA   +WD    LR+++ D G+KK PGCS IE++G+VHEF+ GD SHP  K+IY
Sbjct: 577 VLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIY 636

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHSEKLAMAFGLISSGPGVTIRI 673
            KLDE+ + L+ +GY+P+ S +   V EED KE+A++ HSEKLA+AFGLIS+G    IRI
Sbjct: 637 AKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRI 696

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           VKNLR+C DCH +AKLVS +YDRE+++RD+ RFHHF+ G CSC DYW
Sbjct: 697 VKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/724 (44%), Positives = 465/724 (64%), Gaps = 6/724 (0%)

Query: 3   SNSSISPPSTLTQETPLISPI--ETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC- 59
           SN +I   +   +  P   PI  + C +   LKQ+H+  ++ GL  +P    KL T C  
Sbjct: 15  SNPTILTANNEQKSNPSTVPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACAL 74

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR-PDNYTF 118
           S    + YACKVF +IPRP++  WNT+I+ ++       G+L+++ ML    R P++YTF
Sbjct: 75  SSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTF 134

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
           PF++K  T   ++  G+ +H  V+K  F S +F+ N+LI  Y   G++D A  +F    +
Sbjct: 135 PFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVE 194

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D+V+WN+M SG+ +    +E  +LF  M+ +   P  VT+V VLSACAK  DL+ G+ A
Sbjct: 195 KDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWA 254

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
             Y++   I  NLIL NA+ DMY  CG +  A  +F  ++ KD++SWT ++ GY   G  
Sbjct: 255 CDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDY 314

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTA 357
           D AR+ FD MP  D   W A+I  Y +  + +EAL +FRE+Q   N +P+E T+ S L A
Sbjct: 315 DAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAA 374

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
           CA LGA++LG W+  YI K  +K +  +  +LIDMY KCG +EKA  VF  + R+D F W
Sbjct: 375 CAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVW 434

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           +AMI GLA++GHG  ++D+FS+M    + P+ VT+  +L AC+H+G+VDEGR +F  M  
Sbjct: 435 SAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRP 494

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
            +G+ P   HY CMVD+LGRAG L EA+E+I+ MP+ P++ VWGALLGACR++ + E+AE
Sbjct: 495 VYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAE 554

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
           MA  ++LE D +N   YVLL NIYA   +WD    LRQ +   G++K PGCS IE+NG++
Sbjct: 555 MACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGII 614

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHSEKL 656
           HEF+ GD SHP + EIY KLDE+ + +K  GY+ D S +   V EE  KE A+  HSEKL
Sbjct: 615 HEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKL 674

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           A+A+GLI   P   IRIVKNLR+C DCH +AKL+S +Y+R++++RD+ RFHHF  G+CSC
Sbjct: 675 AIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSC 734

Query: 717 KDYW 720
            DYW
Sbjct: 735 MDYW 738


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/710 (46%), Positives = 463/710 (65%), Gaps = 32/710 (4%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTV-QNKLVTFCCSEKGDMKYACK 70
           +L  E P    +E C+++  L +IH+  IK  LL  P V +N L +        M YA  
Sbjct: 20  SLFPENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVS 79

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           +FR+I  P    +N MI+G++   S    +L++ +M ++ V+PD +TFP +LK  +R  A
Sbjct: 80  IFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQA 139

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           +  G+++H  ++K GF S  FV+N LI  Y  CGEV++AR +FD   + +V TWN+MF+G
Sbjct: 140 LSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAG 199

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y +   ++E  KLF EM    +    VT+V VL+AC +L DL++G+  +RYV+E  +  N
Sbjct: 200 YTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGN 259

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
             L  +L DMYA CG                               QVD AR+ FDQM  
Sbjct: 260 PTLITSLVDMYAKCG-------------------------------QVDTARRLFDQMDR 288

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           RD V W+AMI GY + +R REAL LF EMQ +NI P+E T+VSIL++CA LGALE G+WV
Sbjct: 289 RDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWV 348

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             +I K ++K  + +G AL+D Y KCG VE +  VF +M  K+  +WT +I GLA NG G
Sbjct: 349 HFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQG 408

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
            K+L+ F  ML  ++ P++VT++GVLSAC+H G+VDEGR+ F  M+   GIEP   HYGC
Sbjct: 409 KKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGC 468

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           MVD+LGRAG + EA + IKNMP++PN+++W  LL +C+VH++ E+ E + KQ++ L+P +
Sbjct: 469 MVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTH 528

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              Y+LL NIYA+  RW++  ++R  + ++GIKKTPGCS+IE++GV+HEF A D  H Q+
Sbjct: 529 SGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQS 588

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
           +EIY  +++M   +K  GY+P+ +E  LD  E+DKE +V  HSEKLA+AFGLI S PG T
Sbjct: 589 EEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTT 648

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IRI KNLR+C DCH   KLVS V++RE++VRD+TRFHHFK GSCSC DYW
Sbjct: 649 IRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698


>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 512

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/465 (68%), Positives = 383/465 (82%), Gaps = 10/465 (2%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK-GDMKYACKVFRKIPRPSVCLWNTMI 87
           M QLKQIHSQTIK G +  P +QNK+ +FCC+++ GDM YA ++F  IP P+V  WNTM+
Sbjct: 1   MDQLKQIHSQTIKTGTICKPIIQNKIFSFCCTQEFGDMNYARQLFDTIPEPTVFHWNTML 60

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           KGYSRIDS K GV +YLDMLK+DV PD YT+PFL+KGF +DIA E+GKELHCHV+K+G  
Sbjct: 61  KGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLG 120

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           S+VFVQNALI+ Y LCG  DMARGIFD+SYK DVVTWNAM S Y R+KQ+D+T+ LF EM
Sbjct: 121 SNVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEM 180

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           E+K VLP+SVT+V VLSAC+KLKDL+ G++ H+Y+ +  +  NLI+ENAL DMYAACGEM
Sbjct: 181 EKKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEM 240

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             AL IF ++K++DVISWTAIVTG+ N GQ+D+AR+YFDQMPERDYV WTAMIDGYL+VN
Sbjct: 241 SVALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVN 300

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
            F+EAL LF EMQTSN++PDEFT+VSILTACA LGALELGEWV+TYIDKNKVKND +VGN
Sbjct: 301 CFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGN 360

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           ALIDMY KCG+VEKA+ +F  M R DKFTWTAMIVGLAING+G+++LDMF QML+AS+ P
Sbjct: 361 ALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMFVQMLKASVTP 420

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           DE+TYVGVL ACTHTGMVDEGR    +         +  H GC +
Sbjct: 421 DEITYVGVLCACTHTGMVDEGRNLLYE---------DPGHSGCQL 456


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/707 (45%), Positives = 454/707 (64%), Gaps = 35/707 (4%)

Query: 15  QETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFR 73
           Q  P +  +E C +M QLKQIH+Q ++  L  +P   +K+V FC   + G + YA  VF 
Sbjct: 39  QLHPCLLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFN 98

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           +IP P+    N++I+GY+  +  +  +L Y  M+   + PD +TFP L K  +  +  E 
Sbjct: 99  QIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFK--SCGVLCE- 155

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK+LHCH  K GF S  ++QN L++ Y  CG +  AR +FD      VV+W  M   Y +
Sbjct: 156 GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQ 215

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                E  KLF  ME   V P  +T+V VL+ACA+ +DL+  K+ H+Y+ E  I  + +L
Sbjct: 216 WDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVL 275

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            +AL D+Y  CG                                  +AR  F++MPE++ 
Sbjct: 276 TSALMDVYCKCG-------------------------------CYPLARDLFNKMPEKNL 304

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
             W  MI+G++  + + EAL+LF EMQ S ++ D+ T+ S+L AC +LGALELG+W+  Y
Sbjct: 305 FCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVY 364

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           I+K K++ D+ +G AL+DMY KCG +E A RVF+EM  KD  TWTA+IVGLA+ G G K+
Sbjct: 365 IEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKA 424

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           L++F +M  + + PD +T+VGVL+AC+H G+V+EG  YF  M  ++GI+P+  HYGCMVD
Sbjct: 425 LELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVD 484

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           +LGRAG + EA ++I+NMPM P+  V   LL ACR+H +  +AE AA+Q++ELDP N   
Sbjct: 485 MLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGT 544

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           YVLL NIY++   W+  +++R+++++R IKK PGCS IE+ GVVHEFV GD SHPQ+ EI
Sbjct: 545 YVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEI 604

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
           Y  LD+M   LK  GY+PD SEV  D+ E++KE  +  HSEKLA+AFGL+S+ PG  IR+
Sbjct: 605 YETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRV 664

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           VKNLR+C DCH   K +S VY+RE+IVRD+ RFHHF  GSCSC+D+W
Sbjct: 665 VKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/724 (43%), Positives = 478/724 (66%), Gaps = 6/724 (0%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-S 60
           FSN +  P +   +    IS I+ C S+ QLKQ H+  I+ G+ ++P   +KL      S
Sbjct: 18  FSNPN-QPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALS 76

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR--PDNYTF 118
               ++YA KVF +IP+P+   WNT+I+ Y+        +  +LDM+ S+ +  P+ YTF
Sbjct: 77  SFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTF 136

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
           PFL+K      ++  G+ LH   +K    S VFV N+LI  Y  CG++D A  +F    +
Sbjct: 137 PFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE 196

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            DVV+WN+M +G+ +    D+  +LF +ME + V  + VT+V VLSACAK++DL+ G+R 
Sbjct: 197 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRV 256

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
             Y++E ++  NL L NA+ DMY  CG +  A  +F  ++ KD ++WT ++ GY      
Sbjct: 257 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 316

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTA 357
           + AR+  + MP++D V W A+I  Y +  +  EAL +F E+Q   NI+ ++ T+VS L+A
Sbjct: 317 EAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSA 376

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
           CA +GALELG W+ +YI KN +K + +V +ALI MY KCGD+EKA+ VF  + ++D F W
Sbjct: 377 CAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVW 436

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           +AMI GLA++G G +++DMF +M  A++ P+ VT+  V  AC+HTG+VDE    F  M  
Sbjct: 437 SAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMES 496

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
            +GI P + HY C+VD+LGR+G+L +A++ I+ MP+ P++ VWGALLGAC++H +  +AE
Sbjct: 497 SYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAE 556

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
           MA  ++LEL+P N+  +VLL NIYA   +WDN  ELR+ +   G+KK PGCS IE++G++
Sbjct: 557 MACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMI 616

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHSEKL 656
           HEF++GD +HP ++++Y KL E+   LK  GY P++S V   + EE+ KE+++  HSEKL
Sbjct: 617 HEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKL 676

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           A+ +GLIS+     IR++KNLRMC DCH +AKL+S +Y+RE+IVRD+ RFHHF++G CSC
Sbjct: 677 AICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSC 736

Query: 717 KDYW 720
            D+W
Sbjct: 737 NDFW 740


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/745 (44%), Positives = 455/745 (61%), Gaps = 64/745 (8%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKY 67
           PP  L Q  P ++ + TC+S   LKQIHSQ IK GL       +KL+ FC  S  G++ Y
Sbjct: 25  PPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSY 84

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A  +F  I +P+  +WNTMI+G S   S    +  Y+ ML   V P++YTFPFLLK   +
Sbjct: 85  ALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK 144

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV--------------------- 166
             A + GK++H HVLK G +S  FV  +LI+ Y   GE+                     
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 167 ----------DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
                     D AR +F+     D V+WNAM +GY +  +F+E    F EM+R  V P  
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T+V VLSACA+   L++G     ++++  +  NL L NAL DMY+ CG++         
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL--------- 315

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
                                 D AR  F+ + E+D + W  MI GY  +N ++EAL LF
Sbjct: 316 ----------------------DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALF 353

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCK 395
           R+MQ SN+ P++ T VSIL ACA LGAL+LG+W+  YIDK  +   +  +  +LIDMY K
Sbjct: 354 RKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAK 413

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG++E A++VF  M  K   +W AMI GLA++GH + +L++F QM      PD++T+VGV
Sbjct: 414 CGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGV 473

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           LSAC+H G+V+ GR+ F+ M   + I P   HYGCM+DLLGRAG  +EA  ++KNM MKP
Sbjct: 474 LSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKP 533

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           +  +WG+LLGACRVH + E+ E AAK + EL+P+N   YVLL NIYA   RWD+   +R 
Sbjct: 534 DGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRT 593

Query: 576 MILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
            + D+G+KK PGCS IE++ VVHEF+ GDK H Q+++IY  LDE+   L+  G++PD SE
Sbjct: 594 KLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSE 653

Query: 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
           V  D+ EE KE ++  HSEKLA+AFGLIS+ P  TIRIVKNLR+C +CH   KL+S +++
Sbjct: 654 VLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFN 713

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           RE+I RD+ RFHHFK GSCSC DYW
Sbjct: 714 REIIARDRNRFHHFKDGSCSCMDYW 738


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/723 (43%), Positives = 478/723 (66%), Gaps = 6/723 (0%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-S 60
           FSN +   P+T  + +  IS IE C S+ QLKQ H   I+ G  ++P   +KL      S
Sbjct: 18  FSNPN--QPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALS 75

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFP 119
               ++YA KVF +IP+P+   WNT+I+ Y+        +  +LDM+ +S   P+ YTFP
Sbjct: 76  SFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFP 135

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           FL+K      ++  G+ LH   +K    S VFV N+LI  Y  CG++D A  +F    + 
Sbjct: 136 FLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           DVV+WN+M +G+ +    D+  +LF +ME + V  + VT+V VLSACAK+++L+ G++  
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
            Y++E ++  NL L NA+ DMY  CG +  A  +F  ++ KD ++WT ++ GY      +
Sbjct: 256 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYE 315

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTAC 358
            AR+  + MP++D V W A+I  Y +  +  EAL +F E+Q   N++ ++ T+VS L+AC
Sbjct: 316 AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSAC 375

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A +GALELG W+ +YI K+ ++ +  V +ALI MY KCGD+EK++ VF  + ++D F W+
Sbjct: 376 AQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWS 435

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           AMI GLA++G G++++DMF +M  A++ P+ VT+  V  AC+HTG+VDE    F  M   
Sbjct: 436 AMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESN 495

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           +GI P E HY C+VD+LGR+G+L +A++ I+ MP+ P++ VWGALLGAC++H +  +AEM
Sbjct: 496 YGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEM 555

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           A  ++LEL+P N+  +VLL NIYA   +W+N  ELR+ +   G+KK PGCS IE++G++H
Sbjct: 556 ACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIH 615

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHSEKLA 657
           EF++GD +HP ++++Y KL E+   LK  GY P+IS+V   + EE+ KE+++  HSEKLA
Sbjct: 616 EFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLA 675

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           + +GLIS+     IR++KNLR+C DCH +AKL+S +YDRE+IVRD+ RFHHF++G CSC 
Sbjct: 676 ICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCN 735

Query: 718 DYW 720
           D+W
Sbjct: 736 DFW 738


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/778 (42%), Positives = 477/778 (61%), Gaps = 66/778 (8%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGD 64
           +  P  TL+    L + +  C ++ Q  +I SQ I  G +++    ++L+ F   S    
Sbjct: 34  TFKPTITLS---ILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIG 90

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + Y+ ++F +I   +  +WNTM++ Y + +S +  +L+Y  M+K++V PDNYT+P +++ 
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQN------------------------------ 154
               +    GKE+H HVLK GFDS V+VQN                              
Sbjct: 151 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 210

Query: 155 -ALISTYCLCGEVDMARGIFDV------------------------SYK-------DDVV 182
            ++++ Y   G+V+ A+ IFD                         ++K        D+V
Sbjct: 211 NSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMV 270

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +W+A+ SGY++   ++E   +F EM   G+    V +V VLSACA L  +  GK  H  V
Sbjct: 271 SWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLV 330

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
               I   + L+NAL  MY+  GE+  A ++F    N D ISW ++++G +  G V+ AR
Sbjct: 331 IRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKAR 390

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
             FD MPE+D V W+A+I GY + + F E L LF EMQ   IRPDE  +VS+++AC +L 
Sbjct: 391 ALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLA 450

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
           AL+ G+WV  YI KN +K ++ +G  L+DMY KCG VE A  VF  M  K   +W A+I+
Sbjct: 451 ALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALII 510

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           GLA+NG  ++SLDMFS+M    +IP+E+T++GVL AC H G+VDEGR +FA M  +HGIE
Sbjct: 511 GLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIE 570

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           PN  HYGCMVDLLGRAG LNEA ++I++MPM P+   WGALLGAC+ H D EM E   ++
Sbjct: 571 PNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRK 630

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           ++EL PD++  +VLL NI+A+   W++  E+R M+  +G+ KTPGCS+IE NGVVHEF+A
Sbjct: 631 LIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLA 690

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
           GDK+HP   ++   L+EM   LK  GY PD +EV LD+ EE+KE  +++HSEKLA+AFGL
Sbjct: 691 GDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGL 750

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++  P   IRI+KNLR+C DCH  AKL+S  Y RE++VRD+ RFH+FK G+CSC DYW
Sbjct: 751 LTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/747 (42%), Positives = 453/747 (60%), Gaps = 63/747 (8%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGD 64
           S  PP  + QE P +  +  C+S+   KQIH+  IK GL       +KL+ F   S  GD
Sbjct: 19  SSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGD 78

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + YA  +F  I  P++ +WN+MI+G S   S    ++ ++ M+ S V P++YTFPFLLK 
Sbjct: 79  ISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKS 138

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS-YKD---- 179
             +  +   GK++H HVLK GF S VF+  +LI+ Y   GE++ A+ +FD S ++D    
Sbjct: 139 CAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISF 198

Query: 180 --------------------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
                                     DVV+WNAM +GY ++ +  E   LF +M +  V 
Sbjct: 199 TALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVP 258

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P   TIV VLSACA+   LD+G     ++++  +  NL L NAL DMY+ CG++      
Sbjct: 259 PNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDL------ 312

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                                      AR+ FD M ERD + W  MI GY  +  ++EAL
Sbjct: 313 -------------------------QTARELFDDMLERDVISWNVMIGGYTHMCSYKEAL 347

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LFREM  S + P E T +SIL +CA+LGA++LG+W+  YI+KN       +  +LID+Y
Sbjct: 348 ALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLY 407

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KCG++  A++VF  M  K   +W AMI GLA++G  DK+ ++FS+M    I P+E+T+V
Sbjct: 408 AKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFV 467

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
           G+LSAC H G+VD G+++F+ M   + I P   HYGCM+DLLGRAG   EA  +++NM +
Sbjct: 468 GILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEV 527

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           KP+  +WG+LLGACR H   E+ E+ A+++ EL+PDN   YVLL NIYA   +WD+   +
Sbjct: 528 KPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARI 587

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R  + DRG+KK PGC+ IE++ VVHEF+ GDK HPQ+++IY  L+E+   LK  G++ D 
Sbjct: 588 RTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADT 647

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
           SEV  D+ EE KE A+  HSEKLA+AFGLIS+ PG  IRI+KNLR+C +CH   KL+S +
Sbjct: 648 SEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKI 707

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++RE+I RD+ RFHHFK GSCSC DYW
Sbjct: 708 FNREIIARDRNRFHHFKDGSCSCNDYW 734


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/707 (43%), Positives = 467/707 (66%), Gaps = 9/707 (1%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF--CCSEKGDMKYACKVFRKIPRPSV 80
           +E+C+S  Q  QIH+QTI  GL       ++L++F      K  + ++  +F +I  P++
Sbjct: 16  LESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNL 75

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP-DNYTFPFLLKGFTRDIAVEFGKELHC 139
            +WNTMI+GYSR D+ +  +++Y+ M+   + P +N+TFPFLL    R  ++E G E+H 
Sbjct: 76  FMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHS 135

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           H++K GF+S +FV+NALI  Y + G +++AR +FD S   D+V++N M  GY  V Q + 
Sbjct: 136 HIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPES 195

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC--KIVPNLILENAL 257
              LFGEM+  G+LP   T V + S C+ L + +VGK+ H  V +    I  N++L++A+
Sbjct: 196 ALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAI 255

Query: 258 TDMYAACGEMGFALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
            DMYA CG +  A  +F  +  +K   +W+++V GY   G++++AR+ F+ M ERD + W
Sbjct: 256 VDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISW 315

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-KTYID 375
           TAMI GY +  +  EAL LF+EM+   I+PDE T+V++L+ACA LGA +LG+ +   YI+
Sbjct: 316 TAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIE 375

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR--KDKFTWTAMIVGLAINGHGDKS 433
                 +  +  A++DMY KCG ++ A  +FR + +  K  F + +MI GLA +G G+ +
Sbjct: 376 NGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETA 435

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           + +F +++   + PDEVT+VGVL AC H+G+++EG++ F  M   +GI+P   HYGCMVD
Sbjct: 436 ITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVD 495

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           LLGR G L EA ++++ MP + NS++W ALL ACR H + ++ E+A +++LE++  + A 
Sbjct: 496 LLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGAR 555

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           YVLL NI A  N+W+  R++R+++ D GI+K PG S IE+ G +H FVA DKSHPQ KEI
Sbjct: 556 YVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEI 615

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
            L L +M   LK  GY+P+ ++V  D+ EE+KE  V  HSEKLA+AFGL+   P  TIRI
Sbjct: 616 ELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRI 675

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           VKNLR+C DCH+  KLVS +Y RE+ VRD  RFHHF++GSCSC D+W
Sbjct: 676 VKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 238/494 (48%), Gaps = 86/494 (17%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           I+PP+  T   P +  + +C  +  L+   ++HS  IK G  ++  V+N L+    S  G
Sbjct: 106 IAPPNNFT--FPFL--LNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHL-YSVFG 160

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           ++  A  +F +     +  +NTMIKGY+ ++  ++ + ++ +M  S + PD +TF  L  
Sbjct: 161 NLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFS 220

Query: 124 GFTRDIAVEFGKELHCHVLK--FGFDSSVFVQNALIST---------------------- 159
             +       GK++H  V K     DS++ +++A++                        
Sbjct: 221 VCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKS 280

Query: 160 ----------YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
                     Y  CGE+++AR +F+  ++ DV++W AM SGY +  Q  E  +LF EME 
Sbjct: 281 AAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEA 340

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMG 268
            G+ P  VT+V VLSACA+L   D+GKR  H+Y++      N IL  A+ DMYA CG + 
Sbjct: 341 LGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSID 400

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            ALEIF  +          + TG++                      + +MI G  +   
Sbjct: 401 SALEIFRRVGKN-------MKTGFV----------------------FNSMIAGLAQHGL 431

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGN 387
              A+T+FRE+ ++ ++PDE T V +L AC + G +E G+ + ++  +   +K  +    
Sbjct: 432 GETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYG 491

Query: 388 ALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH-------GDKSLDMFSQ 439
            ++D+  + G +E+A  + ++M    +   W A++     +G+       G K L+M +Q
Sbjct: 492 CMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQ 551

Query: 440 -----MLRASIIPD 448
                +L ++I+ D
Sbjct: 552 HGARYVLLSNILAD 565


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/708 (44%), Positives = 450/708 (63%)

Query: 13  LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           L     L S + +  S+  LKQ+H+Q ++  L  + ++  KLV   C+    + YA  VF
Sbjct: 20  LHSHHTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVF 79

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             IP+P   L N  ++  SR +  +  +L+Y  M    +  D ++FP LLK  +R  ++ 
Sbjct: 80  NLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLV 139

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G E+H    K GFDS  FVQ  L+  Y  CG +  AR +FD  +  DVVTW+ M  GY 
Sbjct: 140 EGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYC 199

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +   F++   LF EM+   V P  + +  VLSAC +  +L  GK  H ++ E  IV +  
Sbjct: 200 QSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPH 259

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           L++AL  MYA+CG M  AL +F  +  K++++ TA+VTGY   GQ++ AR  F+QM ++D
Sbjct: 260 LQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKD 319

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W+AMI GY   +  +EAL LF EMQ+  I+PD+ T++S++TACA+LGAL+  +W+  
Sbjct: 320 LVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHL 379

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           ++DKN     + + NALI+MY KCG +E+A+R+F +M RK+  +WT MI   A++G    
Sbjct: 380 FVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGS 439

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L  F QM   +I P+ +T+VGVL AC+H G+V+EGR+ F  M  +H I P   HYGCMV
Sbjct: 440 ALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMV 499

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRA  L EALE+++ MP+ PN I+WG+L+ ACRVH + E+ E AAK++LELDPD++ 
Sbjct: 500 DLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDG 559

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            +V L NIYA   RW++  ++R+++  +GI K  GCS  E+N  +HEF+  D+SH    E
Sbjct: 560 AHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADE 619

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY KL E+ S LK VGY P+   + +D+ EE+K+  V  HSEKLA+ +GL+  G G  IR
Sbjct: 620 IYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIR 679

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I+KNLR+C DCH   KL S VY+RE++VRD+TRFHH+K G CSCKDYW
Sbjct: 680 IIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/755 (42%), Positives = 451/755 (59%), Gaps = 66/755 (8%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC- 59
           + S S  SPP  L  + P ++ +  C+++  LKQIHSQ IK GL       +KL+ FC  
Sbjct: 13  VLSFSDPSPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAV 72

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           S  GD+ YA  +F+ I  P+  +WN MI+G S  +S    +  Y+ M+ S   P+ YTFP
Sbjct: 73  SPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFP 132

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYK 178
            + K  T+      GK++H HVLK G + + FV  +LI+ Y   GE+  AR +FD  S +
Sbjct: 133 SIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMR 192

Query: 179 D------------------------------DVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           D                              DVV+WNAM SGY +  + +E    F EM 
Sbjct: 193 DAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMR 252

Query: 209 RKGVLPTSVTIVLVLSACAKL-KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           R  V P   T++ VLSACA+    L +G     ++++  +  N+ L N L DMY  CG++
Sbjct: 253 RAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDL 312

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
                                          + A   F+++ +++ V W  MI GY  ++
Sbjct: 313 -------------------------------EEASNLFEKIQDKNVVSWNVMIGGYTHMS 341

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN--KVKNDIFV 385
            ++EAL LFR M  SNI P++ T +SIL ACANLGAL+LG+WV  Y+DKN   +KN + +
Sbjct: 342 CYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVAL 401

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
             +LIDMY KCGD+  A+R+F  M  K   TW AMI G A++GH D +L +FS+M     
Sbjct: 402 WTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGF 461

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
           +PD++T+VGVL+AC H G++  GR YF+ M   + + P   HYGCM+DL GRAG  +EA 
Sbjct: 462 VPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAE 521

Query: 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
            ++KNM MKP+  +W +LLGACR+HR  E+AE  AK + EL+P+N + YVLL NIYA   
Sbjct: 522 TLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAG 581

Query: 566 RWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625
           RW++  ++R  + D  +KK PGCS IE++ VVHEF+ GDK HPQ+ EIY  LDE+   L+
Sbjct: 582 RWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLE 641

Query: 626 FVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHR 685
             G++PD SEV  D+ EE KE  +  HSEKLA+AFGLIS+ PG TIRI+KNLR+C +CH 
Sbjct: 642 KAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHS 701

Query: 686 MAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             KL+S +++RE+I RD+ RFHHFK GSCSCKDYW
Sbjct: 702 ATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 309/723 (42%), Positives = 457/723 (63%), Gaps = 4/723 (0%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-S 60
             N S    + L +   ++S I+ C S  QLK++H++ ++ GL  +P   +KL T    S
Sbjct: 11  LQNFSTLNNNLLFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALS 70

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFP 119
               + YA  +F +IP+P++  WNT+I+ Y+         +I+LD+L K +  P+ +TFP
Sbjct: 71  SFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFP 130

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           F++K  +   A   G  +H   +K  F   +++ N+L+  Y  CG++ MA  +F      
Sbjct: 131 FVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCK 190

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           DVV+WN+M S + +    ++  +LF +MER+ V+P SVT+V VLSACAK  DL+ G+   
Sbjct: 191 DVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVC 250

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
            Y++   I  +L L NA+ DMY  CG +  A ++F  +  +DV SWT ++ GY   G  D
Sbjct: 251 SYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYD 310

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI-RPDEFTIVSILTAC 358
            AR  F+ MP ++   W  +I  Y +  + +EAL +F E+Q S I +PDE T+VS L+AC
Sbjct: 311 AARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSAC 370

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A LGA++LG W+  YI +  +  +  + ++L+DMY KCG +EKA  VF  +  +D + W+
Sbjct: 371 AQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWS 430

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           AMI GL ++G G  ++D+F +M  A + P+ VT+  VL AC+H G+VDEGR +F +M   
Sbjct: 431 AMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPV 490

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           +G+ P   HY CMVD+LGRAG L EA+E+I  M   P++ VWGALLGAC +H + E+ E+
Sbjct: 491 YGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGEL 550

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           A+ Q+L+L+P N    VLL NIYA   RW+   ELR+++ D  +KK PGCS IE NG VH
Sbjct: 551 ASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVH 610

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHSEKLA 657
           EF+ GD +HP +  IY KL+E+ + LK VGY P+ S +   + E+D KE+A+  HSEKLA
Sbjct: 611 EFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLA 670

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           +AFGL++  P   IR+VKNLR+C DCH  AKLVS VYDR++++RD+ RFHHF+ G CSC 
Sbjct: 671 IAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCM 730

Query: 718 DYW 720
           DYW
Sbjct: 731 DYW 733


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 310/727 (42%), Positives = 458/727 (62%), Gaps = 7/727 (0%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC- 59
           +  +SS +P S         +  + C S  QLKQIH+Q ++   L +P   ++L T    
Sbjct: 124 IVQHSSPTPASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAF 183

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTF 118
           S    + YA KVF +IP+P++  WN +I+  +        VL+++ ML  S   P+ +TF
Sbjct: 184 SSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTF 243

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV--S 176
           P L+K          GK +H   +K  F   VFV N+LI  Y  CG +D+A  +F++   
Sbjct: 244 PVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEG 303

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
              D+V+WN+M +G+ +    D+   LF  M  +GV P +VT+V V+SACAK  +L +G+
Sbjct: 304 NNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGR 363

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
           +   Y+   +++ NL + NA  DM+  CGE+  A  +F N++ +DV+SWT I+ GY    
Sbjct: 364 KVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMS 423

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ--TSNIRPDEFTIVSI 354
           +  +AR  FD MP +D   W  +I GY +  R +EAL +FRE+Q   S  RPD+ T++S 
Sbjct: 424 EHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLST 483

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           L+ACA LGA+++GEW+  YI K +++ +  +  +LIDMY K GDVEKA  VF  +  KD 
Sbjct: 484 LSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDV 543

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
           F W+AMI GLA++G G+ ++++F  M    + P+ VT+  +L AC+H+G+VDEG+  F +
Sbjct: 544 FVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDE 603

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           M   +G+ P   HY CMVD+LGRAGHL EAL+ I+ MP+ P++ VWGALLGAC +H + E
Sbjct: 604 MERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLE 663

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           +AE A  ++LE++P N   YVLL N+YA    W+   ELRQ + D G+KK  GCS IE++
Sbjct: 664 LAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEID 723

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHS 653
           G VHEF+ GD +HP +++IY KLDE+ + L+  GY+ +   +   V EE+ KE+A+  HS
Sbjct: 724 GTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHS 783

Query: 654 EKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
           EK+A+AFGLI +     IRIVKNLR+C DCH +AK+VS VY R++++RD+ RFHHF  G 
Sbjct: 784 EKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGH 843

Query: 714 CSCKDYW 720
           CSC+DYW
Sbjct: 844 CSCQDYW 850


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 310/694 (44%), Positives = 435/694 (62%), Gaps = 36/694 (5%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           M QLKQIH+Q ++ GL  +P   +K+V FC   E G ++YA  VF +IP P+    N++I
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           +G +  + H+  +L Y +M+   + PD YTFP L K          GK++HCH  K GF 
Sbjct: 61  RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFA 117

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           S  + QN L++ Y  CG +  AR +FD      VV+W  M   + +  Q +E  +LF  M
Sbjct: 118 SDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRM 177

Query: 208 -ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
            + + V P  VT+V VL+ACA+ +DL + KR H Y+ E     +++L   L D+Y  CG 
Sbjct: 178 MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCG- 236

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
                                          V +AR  FD+  E++   W  MI+G++  
Sbjct: 237 ------------------------------CVQLARDLFDKAQEKNLFSWNIMINGHVED 266

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
           + + EAL LFREMQT  I+ D+ T+ S+L AC +LGALELG+W+  YI K ++  D+ +G
Sbjct: 267 SNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALG 326

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
            AL+DMY KCG +E A +VF EM  KD  TWTA+I+GLA+ G  + +L  F +M    + 
Sbjct: 327 TALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVK 386

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD +T+VGVL+AC+H G VDEG  +F  M+  +GI+P   HYG +VD+LGRAG + EA E
Sbjct: 387 PDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEE 446

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
           +IK+MPM P+  V G LLGACR+H + E AE AAKQ+LE+DP +   YVLL NIY +  +
Sbjct: 447 LIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKK 506

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           W+  +  R+++ +RG++K PGCS IE++GVVHEFV GD SH Q+ EI   L++M S LK 
Sbjct: 507 WEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKN 566

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            GY+PD SEV  D+ EE+KE  +  HSEKLA+AFGL+S+  G  IR+VKNLR+C DCH  
Sbjct: 567 AGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSA 626

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            KL+S +Y+RE+IVRD+ RFHHFK G+CSC+ +W
Sbjct: 627 TKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 209/424 (49%), Gaps = 35/424 (8%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S  ++C +  + KQIH  + KLG  ++   QN L+    S  G +  A KVF K+   +V
Sbjct: 93  SLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNM-YSNCGCLVSARKVFDKMEDKTV 151

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
             W TMI  +++ D     V ++  M+KS+ V+P+  T   +L    R   +   K +H 
Sbjct: 152 VSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHE 211

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           ++ + GF   V +   L+  YC CG V +AR +FD + + ++ +WN M +G+     ++E
Sbjct: 212 YIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEE 271

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
              LF EM+ KG+    VT+  +L AC  L  L++GK  H Y+K+ +I  ++ L  AL D
Sbjct: 272 ALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVD 331

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA CG +  A+++F  +  KDV++WTA++ G    GQ + A QYFD             
Sbjct: 332 MYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFD------------- 378

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNK 378
                             EM    ++PD  T V +L AC++ G ++ G     +  D   
Sbjct: 379 ------------------EMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYG 420

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMF 437
           ++  I     L+D+  + G + +A+ + + M +  D+F    ++    I+G+ + +    
Sbjct: 421 IQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAA 480

Query: 438 SQML 441
            Q+L
Sbjct: 481 KQLL 484



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 126/281 (44%), Gaps = 10/281 (3%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTF 57
           M  + ++ P      E  L++ +  C     L   K+IH    + G   +  +   L+  
Sbjct: 177 MMKSENVKP-----NEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDV 231

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
            C + G ++ A  +F K    ++  WN MI G+    +++  +L++ +M    ++ D  T
Sbjct: 232 YC-KCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVT 290

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
              LL   T   A+E GK LH ++ K   D  V +  AL+  Y  CG ++ A  +F    
Sbjct: 291 MASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMP 350

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           + DV+TW A+  G     Q +   + F EM  KGV P ++T V VL+AC+    +D G  
Sbjct: 351 EKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGIS 410

Query: 238 AHRYVKEC-KIVPNLILENALTDMYAACGEMGFALEIFGNI 277
               + +   I P +     L D+    G +  A E+  ++
Sbjct: 411 HFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSM 451


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 290/550 (52%), Positives = 401/550 (72%), Gaps = 8/550 (1%)

Query: 102 IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE---FGKELHCHVLKFGFDSSVFVQNALIS 158
           +Y+ ML    RPD YTFP LLK  T   A E    G  +H HV+KFG + +  V ++L+ 
Sbjct: 5   VYVGMLARGARPDAYTFPPLLKAVT--AAAERGAVGDAVHAHVVKFGMELNAHVASSLVL 62

Query: 159 TYCLCGEVDMARGIFDV---SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
            Y   G+  +AR + D       D  V WNA+ SG++R +QF  +   F +M R GV+PT
Sbjct: 63  MYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPT 122

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
            VT + VLSAC K K + +G + H+ V    ++P+L + NAL DMYA C EM  A E+F 
Sbjct: 123 PVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFE 182

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
            ++ ++ +SWT++++G++  GQVD AR  FD MPERD V WTAMIDGY++  +FREAL +
Sbjct: 183 GMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEM 242

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
           FREMQ S +R DEFT+VS++TACA LGALE GEW + Y+ ++ +K D FVGNAL+DMY K
Sbjct: 243 FREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSK 302

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG +++A  VF+EM  +DKFTWTA+I+GLA+NGHG+++++MF +MLR    PDEVT++GV
Sbjct: 303 CGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGV 362

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           L+ACTH G+VD+GR++F  MT  +GI PN  H+GC++DLLGRAG L EALE I NMPM+P
Sbjct: 363 LTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRP 422

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           NS +WG LL ACRVH ++E+ ++AA+ +LELD +N  VY+LL N+YA  NRW++ R LRQ
Sbjct: 423 NSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQ 482

Query: 576 MILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
           +I+++GIKK PGCS+IEMNG +HEF+AGD+SHP +KEIY KLD++ +DLK  GY+PD++E
Sbjct: 483 VIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDKVLTDLKDAGYVPDLTE 542

Query: 636 VFLDVGEEDK 645
           +F+ V  E+K
Sbjct: 543 IFVQVTREEK 552



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 186/433 (42%), Gaps = 68/433 (15%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR---PSVCLWNTMIKGYS 91
           +H+  +K G+  N  V + LV    + +GD   A  +    P     +  +WN +I G+ 
Sbjct: 41  VHAHVVKFGMELNAHVASSLVLMYAA-RGDGAVARTLLDAWPARGGDTPVVWNALISGHR 99

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           R    +     ++DM+++ V P   T+  +L    +D  +  G ++H  V+  G    + 
Sbjct: 100 RSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLK 159

Query: 152 VQNALISTYCLC-------------------------------GEVDMARGIFDVSYKDD 180
           V NALI  Y  C                               G+VD AR +FD   + D
Sbjct: 160 VGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERD 219

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
            V+W AM  GY +  QF E  ++F EM+   V     T+V V++ACA+L  L+ G+ A  
Sbjct: 220 TVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARI 279

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           Y+    I  +  + NAL DMY+ CG +  AL +F  +  +D  +WTA++ G    G  + 
Sbjct: 280 YMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEE 339

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           A                        +N F   L +F         PDE T + +LTAC +
Sbjct: 340 A------------------------INMFYRMLRVFEA-------PDEVTFIGVLTACTH 368

Query: 361 LGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWT 418
            G ++ G ++  +      +  ++     LID+  + G +++A      M +R +   W 
Sbjct: 369 AGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWG 428

Query: 419 AMIVGLAINGHGD 431
            ++    ++G+ +
Sbjct: 429 TLLAACRVHGNSE 441



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 11/293 (3%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G +  A  +F  +P      W  MI GY +    +  + ++ +M  S VR D +T   ++
Sbjct: 203 GQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVV 262

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
               +  A+E G+    ++ + G     FV NAL+  Y  CG +  A G+F   Y  D  
Sbjct: 263 TACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKF 322

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RY 241
           TW A+  G       +E   +F  M R    P  VT + VL+AC     +D G+      
Sbjct: 323 TWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSM 382

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDM 300
                I PN++    L D+    G++  ALE  GN+  + +   W  ++      G  ++
Sbjct: 383 TGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEI 442

Query: 301 ARQYFDQMPERD------YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
            +   + + E D      Y+L + +   Y + NR+ +   L + +    I+ +
Sbjct: 443 GQLAAEHLLELDTENGMVYILLSNL---YAKSNRWEDVRRLRQVIMEKGIKKE 492


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 318/724 (43%), Positives = 444/724 (61%), Gaps = 34/724 (4%)

Query: 9   PPSTLT-QETPLISPIETCESMH------QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           P STL    TPL +P  T  S H      Q KQIH+  IK                    
Sbjct: 30  PHSTLKFNPTPLQTP-PTSPSQHDLSTLEQTKQIHAHIIKTHF----------------- 71

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
              ++     F     PS   WN +I  Y++ +  +N + +Y  + K D   DN+  P +
Sbjct: 72  HHALQIPLNDFPSGLSPSA-QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSV 130

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           LK   +    + GKE+H  VLK G D  VFV NAL+  Y  C  V+ AR +FD   + DV
Sbjct: 131 LKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDV 190

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           V+W+ M     R K+FD   +L  EM    V P+ V +V +++  A   ++ +GK  H Y
Sbjct: 191 VSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAY 250

Query: 242 V-----KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
           V      E   VP      AL DMYA CG +G A ++F  +  K V+SWTA++ G I   
Sbjct: 251 VIRNSNNEHMGVPT---TTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSN 307

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
           +++ AR  FD    RD ++WTAM+  Y + N   +A  LF +M+TS +RP + TIVS+L+
Sbjct: 308 RLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 367

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
            CA  GAL+LG+WV +YIDK +V+ D  +  AL+DMY KCGD+  A R+F E + +D   
Sbjct: 368 LCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICM 427

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W A+I G A++G+G+++LD+F++M R  + P+++T++G+L AC+H G+V EG++ F  M 
Sbjct: 428 WNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMV 487

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
              G+ P   HYGCMVDLLGRAG L+EA E+IK+MP+KPN+IVWGAL+ ACR+H++ ++ 
Sbjct: 488 HTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLG 547

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           E+AA Q+LE++P+N    VL+ NIYAA NRW +   +R+ +   G+KK PG S+IE+NG 
Sbjct: 548 ELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGT 607

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKL 656
           VHEF+ GD+SHPQ + I   L EM   L   GY+PD S V L++ EE+KE A+  HSEKL
Sbjct: 608 VHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKL 667

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           AMAFGLIS+ P   IRIVKNLR+C DCH   KL+S +Y R +IVRD+ RFHHF+ G CSC
Sbjct: 668 AMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSC 727

Query: 717 KDYW 720
            DYW
Sbjct: 728 GDYW 731


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 325/777 (41%), Positives = 462/777 (59%), Gaps = 68/777 (8%)

Query: 12  TLTQETPLISPI-----ETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG-DM 65
           T T +  L  PI     + C+++ Q  QI SQ I  G   +    ++L+ F       ++
Sbjct: 17  TFTLKPTLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFINI 76

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             + ++F  I  P+  + NTM+KGY + +S    + +Y  ML+S+V  DNYT+P L +  
Sbjct: 77  NQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSC 136

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNAL----------------------------- 156
           +  +A   GK +  HVLK GFDS V++QN L                             
Sbjct: 137 SIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWN 196

Query: 157 --ISTYCLCGEVDMARGIFD--------------VSY-----------------KDDVVT 183
             ++ Y L G V+ A+ ++D              V +                 + D+V+
Sbjct: 197 SMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVS 256

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           W+A+ S Y++ + ++E   LF EM   G++   V ++ VLSAC++L  +  GK  H  V 
Sbjct: 257 WSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVV 316

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           +  I   + L+NAL  MY++C E+  A ++F      D ISW ++++GY+  G+++ AR 
Sbjct: 317 KVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARA 376

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
            FD MP++D V W+AMI GY + +RF E L LF+EMQ    +PDE  +VS+++AC +L A
Sbjct: 377 LFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAA 436

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           L+ G+W+  YI KN +K +I +G  LI+MY K G VE A  VF+ +  K   TW A+I+G
Sbjct: 437 LDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILG 496

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
           LA+NG  DKSL  FS+M    + P+E+T+V VL AC H G+VDEG  +F  M  +H I P
Sbjct: 497 LAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGP 556

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
           N  HYGCMVDLLGRAG L EA E+I++MPM P+   WGALLGAC+ + D E  E   +++
Sbjct: 557 NIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKL 616

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           +EL PD++   VLL NIYA+   W +  E+R M+   G+ KTPGCSMIE +G VHEF+AG
Sbjct: 617 VELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAG 676

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           DK+HPQ + I   LDEM   LK  GY PD  EV LD+ EE+KE  +++HSEKLA+AFGLI
Sbjct: 677 DKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLI 736

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  P   IRIVKNLR+C DCH  AKL+S  ++RE++VRD+ RFHHFK GSCSC DYW
Sbjct: 737 AIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 308/712 (43%), Positives = 439/712 (61%), Gaps = 6/712 (0%)

Query: 14  TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT-FCCSEKGDMKYACKVF 72
            + T ++  I+ C +  QLKQIH+  ++     +P   +KL+T +  S    + YA  VF
Sbjct: 70  VESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVF 129

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR-PDNYTFPFLLKGFTRDIAV 131
            +IP+P++  WNT+I+GY+         LI+L ML S    P+ +TFPFL K  +R   +
Sbjct: 130 NQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVL 189

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             G  LH  V+K    S +F+ N+LI+ Y   G  D+A  +F      DVV+WNAM + +
Sbjct: 190 HLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAF 249

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
                 D+   LF EME K V P  +T+V VLSACAK  DL+ G+    Y++      +L
Sbjct: 250 ALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHL 309

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
           IL NA+ DMY  CG +  A ++F  +  KD++SWT ++ G+   G  D A   FD MP +
Sbjct: 310 ILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHK 369

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWV 370
               W A+I  Y +  + R AL+LF EMQ S + +PDE T++  L A A LGA++ G W+
Sbjct: 370 WTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWI 429

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             YI K+ +  +  +  +L+DMY KCG++ KA  VF  + RKD + W+AMI  LA+ G G
Sbjct: 430 HVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQG 489

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
             +LD+FS ML A I P+ VT+  +L AC H G+V+EG + F  M   +GI P   HY C
Sbjct: 490 KAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVC 549

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           +VD+ GRAG L +A   I+ MP+ P + VWGALLGAC  H + E+AE+A + +LEL+P N
Sbjct: 550 VVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCN 609

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              +VLL NIYA    W+    LR+++ D  +KK P CS I++NG+VHEF+ GD SHP +
Sbjct: 610 HGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFS 669

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK--ERAVYQHSEKLAMAFGLISSGPG 668
           ++IY KLDE++   K +GY PD+S + L + EED   E+++  HSEKLA+AFGLIS+   
Sbjct: 670 QKIYSKLDEISEKFKPIGYKPDMSNL-LQLSEEDNLMEQSLNVHSEKLAIAFGLISTASS 728

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             IRIVKN+R+C DCH  AKLVS +YDR++++RD+ RFHHF+ G CSC DYW
Sbjct: 729 QPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 316/753 (41%), Positives = 441/753 (58%), Gaps = 69/753 (9%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGD 64
           S  PP  L +  P ++ +  C  +  LKQIHS  IK GL      Q+KL+ FC  S   D
Sbjct: 15  SSDPPYKLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRD 74

Query: 65  MKYACKVFRKIPR--PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           + YA  +F  I    P++ +WNT+I+ +S   +  + + ++  ML S + P+++TFP L 
Sbjct: 75  LSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLF 134

Query: 123 KGFTRDIAVEFGKELHCHVLKFG---------------------------FDSSVFVQ-- 153
           K   +  A    K+LH H LK                             FD S      
Sbjct: 135 KSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAV 194

Query: 154 --NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
              ALI+ Y   G VD AR +FD     DVV+WNAM +GY +  +F+E    F  M+   
Sbjct: 195 SFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEAD 254

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V P   T+V VLSAC  L+ L++GK    +V++     NL L NAL DMY+ CGE+G   
Sbjct: 255 VSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIG--- 311

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
                                        AR+ FD M ++D +LW  MI GY  ++ + E
Sbjct: 312 ----------------------------TARKLFDGMEDKDVILWNTMIGGYCHLSLYEE 343

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK----NDIFVGN 387
           AL LF  M   N+ P++ T +++L ACA+LGAL+LG+WV  YIDKN       N++ +  
Sbjct: 344 ALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWT 403

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           ++I MY KCG VE A++VFR M  +   +W AMI GLA+NGH +++L +F +M+     P
Sbjct: 404 SIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQP 463

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D++T+VGVLSACT  G V+ G  YF+ M   +GI P   HYGCM+DLL R+G  +EA  +
Sbjct: 464 DDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVL 523

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           + NM M+P+  +WG+LL ACR+H   E  E  A+++ EL+P+N   YVLL NIYA   RW
Sbjct: 524 MGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRW 583

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           D+  ++R  + D+G+KK PGC+ IE++GVVHEF+ GDK HPQ++ I+  LDE+   L+  
Sbjct: 584 DDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEET 643

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           G++PD SEV  D+ EE KE A+ QHSEKLA+AFGLIS+ PG TIRIVKNLR+C +CH   
Sbjct: 644 GFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSAT 703

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KL+S +++RE+I RD+ RFHHFK G CSC D W
Sbjct: 704 KLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 308/754 (40%), Positives = 449/754 (59%), Gaps = 66/754 (8%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-S 60
           F  SS  PP    +  P +S +  C+++  L+ IH+Q IK GL       +KL+  C  S
Sbjct: 19  FLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVIS 78

Query: 61  EKGD-MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
              D + YA  VF  I  P++ +WNTM +G++      + + +Y+ M+   + P++YTFP
Sbjct: 79  PHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFP 138

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD----- 174
           FLLK   +  A + G+++H HVLK G+D  +FV  +LIS Y   G ++ AR +FD     
Sbjct: 139 FLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHR 198

Query: 175 --VSYK------------------------DDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
             VSY                          DVV+WNAM SGY     + E  +LF EM 
Sbjct: 199 DVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMM 258

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
           +  + P   T+V V+SACA+   +++G++ H ++ +     NL + N+L D+Y+ CGE+ 
Sbjct: 259 KTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELE 318

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A  +F  +  KDVIS                               W  +I GY  +N 
Sbjct: 319 TACGLFEGLLYKDVIS-------------------------------WNTLIGGYTHMNL 347

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK--NKVKNDIFVG 386
           ++EAL LF+EM  S  RP++ T++SIL ACA+LGA+++G W+  YIDK      N   + 
Sbjct: 348 YKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLR 407

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
            +LIDMY KCGD+E A +VF  +L K   +W AMI G A++G  D + D+FS+M +  I 
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIE 467

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD++T+VG+LSAC+ +GM+D GR  F  MT  + I P   HYGCM+DLLG +G   EA E
Sbjct: 468 PDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEE 527

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
           +I NM M+P+ ++W +LL AC++  + E+ E  A+ +++++P+N   YVLL NIYA   R
Sbjct: 528 MINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGR 587

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           W+   ++R ++ D+G+KK PGCS IE++ VVHEF+ GDK HP+ +EIY  L+EM   L+ 
Sbjct: 588 WNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEK 647

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            G++PD SEV  ++ EE KE A+  HSEKLA+AFGLIS+ PG  + IVKNLR+C +CH  
Sbjct: 648 AGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 707

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            KL+S +Y RE+I RD+TRFHHF+ G CSC DYW
Sbjct: 708 TKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 314/720 (43%), Positives = 441/720 (61%), Gaps = 34/720 (4%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           M S  +  P S   +   LI  ++   S   LK +H+  ++ GL  +  + N ++  C  
Sbjct: 1   MLSRPTSPPISKGLEIKKLI--LQGFNSFKHLKHLHAHLLRFGLCHDNYLLN-MILRCSF 57

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           +  D  Y   +F +I +P++ LWNTMI+G    D   + +  Y  M      P+N+TFPF
Sbjct: 58  DFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPF 117

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +LK   R + ++ G ++H  V+K GFD  VFV+ +L+  Y  CG ++ A  +FD     +
Sbjct: 118 VLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKN 177

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           VV+W A+ SGY  V +F E   +F  +    + P S TIV VLSAC +L DL+ G+  H+
Sbjct: 178 VVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHK 237

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
            + E  +V N+ +  +L DMYA CG M                               + 
Sbjct: 238 CIMEMGMVRNVFVGTSLVDMYAKCGNM-------------------------------EK 266

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           AR  FD MPE+D V W AMI GY      +EA+ LF +MQ  N++PD +T+V +L+ACA 
Sbjct: 267 ARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACAR 326

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           LGALELGEWV   +D+N+   +  +G ALID+Y KCG + +A  VF+ M  KD+  W A+
Sbjct: 327 LGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAI 386

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I GLA+NG+   S  +F Q+ +  I PD  T++G+L  CTH G+VDEGR YF  M     
Sbjct: 387 ISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFS 446

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           + P+  HYGCMVDLLGRAG L+EA ++I+NMPM+ N+IVWGALLGACR+HRD ++AE+A 
Sbjct: 447 LTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELAL 506

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
           KQ++EL+P N   YVLL NIY+A  +WD   ++R  + ++ I+K PGCS IE++G+VHEF
Sbjct: 507 KQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEF 566

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
           + GDK HP +++IY KLDE+T  +K  GY+P    V  D+ EE+KE  +  HSEKLA+AF
Sbjct: 567 LVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAF 626

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           GLIS+ P   IR+VKNLR+C DCH   KL+S +  RE+ VRD  RFH F+ GSCSC DYW
Sbjct: 627 GLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 313/749 (41%), Positives = 449/749 (59%), Gaps = 68/749 (9%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKY 67
           PP  + ++ P ++ +E C++++  KQIHS  IK GL     VQ+KL+ FC  S  GD+ Y
Sbjct: 21  PPYKILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSY 80

Query: 68  ACKVF---RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           A  +F   ++  + +V +WN++I+GYS   S  + + ++  ML   V+P+++TFPFL K 
Sbjct: 81  ALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKS 140

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------VSY 177
            T+  A   GK+LH H LK     +  V  ++I  Y   GE+D AR +FD       VS+
Sbjct: 141 CTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSF 200

Query: 178 K------------------------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
                                     DVV+WNAM SGY +  +F+E    F EM+   VL
Sbjct: 201 TALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVL 260

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P   T+V+VLSAC   +  ++GK    +V++     NL L NAL DMY  CGE       
Sbjct: 261 PNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGE------- 313

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                                    D+AR+ FD + E+D + W  MI GY  ++ + EAL
Sbjct: 314 ------------------------TDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEAL 349

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDM 392
            LF  M  SN++P++ T + IL ACA LGAL+LG+WV  YIDKN +  ++  +  +LIDM
Sbjct: 350 ALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDM 409

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVT 451
           Y KCG +E A+RVFR M  ++  +W AM+ G A++GH +++L +FS+M+   +  PD++T
Sbjct: 410 YAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDIT 469

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +VGVLSACT  G+VD G +YF  M   +GI P   HYGCM+DLL RA    EA  ++KNM
Sbjct: 470 FVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNM 529

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
            M+P+  +WG+LL AC+ H   E  E  A+++ +L+P+N   +VLL NIYA   RWD+  
Sbjct: 530 EMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVA 589

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            +R  + D+G+KK PGC+ IE++G VHEF+ GDK HP+   IY  L+E+   L+  G++P
Sbjct: 590 RIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVP 649

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           + SEV  D+ EE KE A+ QHSEKLA++FGLI + PG TIRIVKNLR+C +CH   KL+S
Sbjct: 650 NTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLIS 709

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +++RE+I RD+ RFHHFK G CSC D W
Sbjct: 710 KIFNREIIARDRNRFHHFKDGFCSCNDCW 738


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 287/702 (40%), Positives = 444/702 (63%), Gaps = 1/702 (0%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+S      ++ +  Q+H   +K+GL  +  V N L+ F  +E G +    K+F  +   
Sbjct: 136 LLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFY-AECGKVDLGRKLFDGMLER 194

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           +V  W ++I GYS  D  K  V ++  M ++ V P+  T   ++    +   +E GK++ 
Sbjct: 195 NVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVC 254

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
            ++ + G + S  + NAL+  Y  CG++  AR IFD     ++V +N + S Y   +   
Sbjct: 255 SYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWAS 314

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           +   +  EM +KG  P  VT++  ++ACA+L DL VGK +H YV    +     + NA+ 
Sbjct: 315 DVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAII 374

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMY  CG+   A ++F ++ NK V++W +++ G +  G +++A + FD+M ERD V W  
Sbjct: 375 DMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNT 434

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           MI   ++V+ F EA+ LFREMQ   I  D  T+V I +AC  LGAL+L +WV TYI+KN 
Sbjct: 435 MIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKND 494

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +  D+ +G AL+DM+ +CGD   A  VF+ M ++D   WTA I  +A+ G+ + ++++F+
Sbjct: 495 IHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFN 554

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +ML   + PD+V +V +L+AC+H G VD+GR+ F  M   HGI P+  HYGCMVDLLGRA
Sbjct: 555 EMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRA 614

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G L EA+++I++MP++PN +VWG+LL ACR H++ E+A  AA+++ +L P+   ++VLL 
Sbjct: 615 GLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLS 674

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           NIYA+  +W +   +R  + ++G++K PG S IE+ G++HEF +GD+SH +   I L L+
Sbjct: 675 NIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLE 734

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
           E+   L   GY+PD + V LDV E++KE  + +HSEKLAMA+GLI++G G+ IR+VKNLR
Sbjct: 735 EINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLR 794

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           MC DCH  AKLVS +Y+RE+ VRD  R+H FK G CSC+DYW
Sbjct: 795 MCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  272 bits (696), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 183/625 (29%), Positives = 301/625 (48%), Gaps = 91/625 (14%)

Query: 1   MFSNSSISPPSTLTQETPLISPIET-----CESMHQLKQIHSQTIKLGLLTNPTVQN--K 53
           +F +S++  P++L +  P+     +     C+++ +LKQ+H   +K GLL +    N  K
Sbjct: 5   LFPSSTLLVPASLKEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNK 64

Query: 54  LV--TFCCSEKGDMKYACKVFRKIP--RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS 109
           L+  +        + YA   F        S+ ++N +I+GY+        +L+Y+ ML  
Sbjct: 65  LIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVM 124

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
            + PD YTFPFLL   ++ +A+  G ++H  VLK G +  +FV N+LI  Y  CG+VD+ 
Sbjct: 125 GIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLG 184

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229
           R +FD   + +VV+W ++ +GY       E   LF +M   GV P  VT+V V+SACAKL
Sbjct: 185 RKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKL 244

Query: 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289
           KDL++GK+   Y+ E  +  + I+ NAL DMY  CG++  A +IF    NK+++ +  I+
Sbjct: 245 KDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIM 304

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
           + Y++                     W +            + L +  EM     RPD+ 
Sbjct: 305 SNYVHHE-------------------WAS------------DVLVILDEMLQKGPRPDKV 333

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC------------- 396
           T++S + ACA LG L +G+    Y+ +N ++    + NA+IDMY KC             
Sbjct: 334 TMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHM 393

Query: 397 ------------------GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
                             GD+E A R+F EML +D  +W  MI  L      ++++++F 
Sbjct: 394 PNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFR 453

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-----CMVD 493
           +M    I  D VT VG+ SAC + G +D  +       +   IE N+ H        +VD
Sbjct: 454 EMQNQGIPGDRVTMVGIASACGYLGALDLAK------WVCTYIEKNDIHVDLQLGTALVD 507

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNE 551
           +  R G  + A+ V K M  +  S  W A +G   +  + E A     ++LE  + PD+ 
Sbjct: 508 MFSRCGDPSSAMHVFKRMEKRDVS-AWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDD- 565

Query: 552 AVYVLLCNIYAACNRWDNFRELRQM 576
              V+   +  AC+   +  + RQ+
Sbjct: 566 ---VVFVALLTACSHGGSVDQGRQL 587


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 301/713 (42%), Positives = 432/713 (60%), Gaps = 34/713 (4%)

Query: 11  STLTQ--ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD-MKY 67
           +++TQ  E P    ++ C++   L+Q+H+  +K   L +P +   ++        D + Y
Sbjct: 14  TSITQFPENPKSLILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDY 73

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A  +F  I +P    +N MI+G +   S  N +L++  M +  V+ D +TF  +LK  +R
Sbjct: 74  ALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSR 133

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             A+  G+++H  +LK GF S+ FV+N LI  Y  CG++ +AR +FD   +  +V WN+M
Sbjct: 134 MKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSM 193

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            SGY +   +DE  KLF ++    +    VT++ VL AC +L +L++G+    Y+    +
Sbjct: 194 LSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGL 253

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             N  L  +L DMYA CG                               QVD AR+ FD+
Sbjct: 254 RRNNTLTTSLIDMYAKCG-------------------------------QVDTARKLFDE 282

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           M +RD V W+AMI GY + +R +EAL LF EMQ  N+ P+E T+VS+L +CA LGA E G
Sbjct: 283 MDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETG 342

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           +WV  YI K K+K  + +G  LID Y KCG ++++  VF+EM  K+ FTWTA+I GLA N
Sbjct: 343 KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANN 402

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G G  +L+ FS ML   + P++VT++GVLSAC+H  +VD+GR  F  M     IEP   H
Sbjct: 403 GEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEH 462

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           YGCMVD+LGRAG L EA + I NMP  PN++VW  LL +CR H++ EMAE + + I  L+
Sbjct: 463 YGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLE 522

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P +   Y+LL N YA   R ++   +R +I ++ IKK PGCS+IE++GVVHEF + D  H
Sbjct: 523 PAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEH 582

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
             +KEI+  LD+M   +K +GY+P+  +  L+  EE KE +V  HSEKLA+A+GLI + P
Sbjct: 583 KHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSP 642

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             TIRI KNLRMC DCH   K +S V++R +IVRD+ RFHHFK G CSC DYW
Sbjct: 643 RTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 300/717 (41%), Positives = 447/717 (62%), Gaps = 34/717 (4%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDM 65
           I P S  T+   +      C S+ + KQ H+  ++  LL NP   +KL++F   S  GD+
Sbjct: 2   IKPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDL 61

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
            YA K+F ++  P   + NTMI+GY+R  +    V +Y  M++  V  DNYT+PF+L   
Sbjct: 62  NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAAC 121

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
            R  AV+ G+  HC VLK GF S +FV NALI  Y  CG    A  +FD S   DVVTWN
Sbjct: 122 ARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWN 181

Query: 186 AMFSGYKRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
            M + +      ++   L  EM +   + P  VT+V ++ ACA+L +L+ GK  H Y KE
Sbjct: 182 IMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKE 241

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
             +  NL + NA+ DMY  C +                               ++ A++ 
Sbjct: 242 LGLDENLRVNNAILDMYCKCDD-------------------------------IESAQEV 270

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           F+++ E+D + WT+M+ G  +   F+EAL LF++MQ + I  DE T+V +L+ACA  GAL
Sbjct: 271 FNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGAL 330

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           + G+++   IDK ++  D+ +  AL+DMY KCG ++ A +VFR M  ++ FTW A+I GL
Sbjct: 331 DQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGL 390

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A++GHG+ ++ +F QM    ++PD+VT++ +L AC+H G+VDEG   F  M  +  IEP 
Sbjct: 391 AMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPR 450

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGC+VDLL RA  +++AL  I+NMP+K NS++W  LLGACR     ++AE   ++++
Sbjct: 451 MEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVI 510

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           EL+PD+   YV+L N+YA  ++WD+  +LR+ + ++GI+KTPGCS IE+NG++H+FVAGD
Sbjct: 511 ELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGD 570

Query: 605 KSHPQTKEIYLKLDEMTSDLKF-VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           +SH QT++IY  ++EMT  +    G++P  + V  D+ EE+KE +++ HSEKLA+A GLI
Sbjct: 571 RSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLI 630

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+  G  IRIVKNLR+C DCH   K+ S VY+RE++ RD++RFHHFK GSCSC D+W
Sbjct: 631 STPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  596 bits (1536), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 303/754 (40%), Positives = 450/754 (59%), Gaps = 66/754 (8%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           F  SS  PP    +  P +S +  C+++  L+ IH+Q IK+GL       +KL+ FC   
Sbjct: 19  FLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILS 78

Query: 62  KG--DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
                + YA  VF+ I  P++ +WNTM +G++      + + +Y+ M+   + P++YTFP
Sbjct: 79  PHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFP 138

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD----- 174
           F+LK   +  A + G+++H HVLK G D  ++V  +LIS Y   G ++ A  +FD     
Sbjct: 139 FVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 198

Query: 175 --VSYK------------------------DDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
             VSY                          DVV+WNAM SGY     + E  +LF +M 
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 258

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
           +  V P   T+V V+SACA+   +++G++ H ++ +     NL + NAL D+Y+ CGE+ 
Sbjct: 259 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEL- 317

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
                                         + A   F+++P +D + W  +I GY  +N 
Sbjct: 318 ------------------------------ETACGLFERLPYKDVISWNTLIGGYTHMNL 347

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK--NKVKNDIFVG 386
           ++EAL LF+EM  S   P++ T++SIL ACA+LGA+++G W+  YIDK    V N   + 
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 407

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
            +LIDMY KCGD+E A +VF  +L K   +W AMI G A++G  D S D+FS+M +  I 
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD++T+VG+LSAC+H+GM+D GR  F  MT  + + P   HYGCM+DLLG +G   EA E
Sbjct: 468 PDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEE 527

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
           +I  M M+P+ ++W +LL AC++H + E+ E  A+ +++++P+N   YVLL NIYA+  R
Sbjct: 528 MINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGR 587

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           W+   + R ++ D+G+KK PGCS IE++ VVHEF+ GDK HP+ +EIY  L+EM   L+ 
Sbjct: 588 WNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEK 647

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            G++PD SEV  ++ EE KE A+  HSEKLA+AFGLIS+ PG  + IVKNLR+C +CH  
Sbjct: 648 AGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 707

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            KL+S +Y RE+I RD+TRFHHF+ G CSC DYW
Sbjct: 708 TKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/687 (41%), Positives = 431/687 (62%), Gaps = 2/687 (0%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           Q+H   +K+GL  +  +QN L+ F  +E G M +  KVF  +   +V  W ++I GY+R 
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFY-AECGHMDHGHKVFEGMSERNVVSWTSLICGYARG 210

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           D  K  V ++ +M+++ +RP + T   ++    +   ++ G+ +  ++ + G   +  + 
Sbjct: 211 DRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMV 270

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           NAL+  Y  CG +D A+ +FD     ++V +N + S Y R     E   +  EM ++G  
Sbjct: 271 NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPR 330

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  VT++  +SA A+L DL  GK  H YV    +     + N + DMY  CG+   A  +
Sbjct: 331 PDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRV 390

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  + NK V+SW ++  G+I  G V+ A + F+Q+PER+ V W  MI G ++ + F +A+
Sbjct: 391 FDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAI 450

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LFREMQ   I+ D  T++ I +AC  LGA EL +WV TYI+KN +  D+ +  AL+DM+
Sbjct: 451 ELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMF 510

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            +CGD + A +VF +M  +D   WTA I  +A+ G+G+ +  +F+QML   + PD V +V
Sbjct: 511 ARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFV 570

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            VL+AC+H G V++G   F+ M   HGI P   HYGCMVDLLGRAG L EA ++IK+MPM
Sbjct: 571 QVLTACSHGGQVEQGLHIFSLME-DHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPM 629

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           +PN +VWG+LL ACRVH++ EMA  AA++I EL P    V+VLL NIYA+  +W +   +
Sbjct: 630 EPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARV 689

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R  + ++G++K PG S +++NGV+HEF +GD+SHP+   I L L EM       G++PD+
Sbjct: 690 RLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDL 749

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
           S V LDV E++KE  + +HSEKLA+AFGLI++G  + IR+VKNLRMC DCH  AK+ S++
Sbjct: 750 SNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASII 809

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
           Y+RE+IVRD  RFH F+ G CSC DYW
Sbjct: 810 YNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 175/601 (29%), Positives = 281/601 (46%), Gaps = 77/601 (12%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC--SEK 62
           + I     +T+++ L   +  C++++QLKQ+H Q  K GL   P+   KLV      +  
Sbjct: 14  TQIKEADPMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASP 73

Query: 63  GDMKYACKVFRKIPRP-----SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
             + YA K F           ++ + N++I+GYS     +  +L+Y+ ML   V P++YT
Sbjct: 74  ESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYT 133

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           FPF+L G T+  A   G ++H  V+K G +  VF+QN LI  Y  CG +D    +F+   
Sbjct: 134 FPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS 193

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           + +VV+W ++  GY R  +  E   LF EM   G+ P+SVT+V V+SACAKL+DLD+G+R
Sbjct: 194 ERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGER 253

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
              Y+ E  +  N ++ NAL DMY  CG +  A  +F    +++++ +  I++ Y  +G 
Sbjct: 254 VCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGL 313

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
                                           REAL +  EM     RPD  T++S ++A
Sbjct: 314 A-------------------------------REALAILDEMLQQGPRPDRVTMLSAISA 342

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC--------------------- 396
            A L  L  G+    Y+ +N ++    +GN +IDMY KC                     
Sbjct: 343 SAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSW 402

Query: 397 ----------GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
                     GDVE A  VF ++  ++   W  MI GL      + ++++F +M    I 
Sbjct: 403 NSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIK 462

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
            D VT +G+ SAC + G   E  ++      ++GI  +      +VD+  R G    A++
Sbjct: 463 ADRVTMMGIASACGYLG-APELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQ 521

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL--ELDPDNEAVYVLLCNIYAAC 564
           V   M  +  S  W A +G   +  + E A     Q+L   + PD     VL   +  AC
Sbjct: 522 VFNKMTERDVS-AWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPD----VVLFVQVLTAC 576

Query: 565 N 565
           +
Sbjct: 577 S 577


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 298/716 (41%), Positives = 439/716 (61%), Gaps = 37/716 (5%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLT-NPTVQNKLVTFCCSEKGDMKY 67
           P        P  +P+ T      L Q+H+  IK G LT +P   + L+    +    + Y
Sbjct: 11  PTPAGAGPAPPHAPLRT--DPRYLPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPY 68

Query: 68  ACKVFRKIPRP--SVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKG 124
           A  +FR  PRP  S   +N +++        ++ + ++++ML  + V PD +T    LK 
Sbjct: 69  AVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKS 128

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
            +R   ++ G+ +  + +K G  +  FV ++LI  Y  C +V  A+ +FD   ++ VV W
Sbjct: 129 CSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMW 188

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           NA+ + Y +   + E  ++F  M   GV    +T+V V++AC ++ D  +GK    YV E
Sbjct: 189 NAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDE 248

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
             +V N  L  AL DMYA C                               G++  AR+ 
Sbjct: 249 KGLVRNRNLMTALIDMYAKC-------------------------------GELGKARRL 277

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           FD M  RD V W+AMI GY + ++ REAL LF EMQ + + P++ T+VS+L+ACA LGAL
Sbjct: 278 FDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGAL 337

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           E G+WV +YI + ++   I +G AL+D Y KCG ++ A   F  M  K+ +TWTA+I G+
Sbjct: 338 ETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGM 397

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A NG G ++L++FS M +ASI P +VT++GVL AC+H+ +V+EGR +F  MT  +GI+P 
Sbjct: 398 ATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPR 457

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGC+VDLLGRAG ++EA + I+ MP++PN+++W ALL +C VH++ E+ E A KQI+
Sbjct: 458 AEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIV 517

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
            L+P +   Y+LL NIYA+  +W N   +R+ + DRGI+KTPGCS+IE++GVV EF A D
Sbjct: 518 SLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAED 577

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
             HPQ KEIY K++EM   +K  GY+P+ ++V L+V E +KE +V  HSEKLA+AFGL+ 
Sbjct: 578 SDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMK 637

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             PG TIR+ KNLR+C DCH   KL+S VY+RE++VRD+ RFHHFK G+CSC DYW
Sbjct: 638 LDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/692 (41%), Positives = 423/692 (61%), Gaps = 32/692 (4%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
            +QLK IH++ ++L L  +  + N L+  C  + G   Y+  VF ++  P++ LWNTMI+
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLN-LILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIR 87

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
           G    D   + + +Y  M      P+N+T PF+LK   R + V  G ++H  ++K G+D 
Sbjct: 88  GLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDH 147

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
            VFV+ +L+S Y  C   D A  +FD     +VV+W A+ +GY     F E    F ++ 
Sbjct: 148 DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
             G+ P S ++V VL+ACA+L D   G+   RY+ +  +  N+ +  +L DMY  CG + 
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNL- 266

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
                                         + A   F  MPE+D V W+ MI GY     
Sbjct: 267 ------------------------------ERANLIFSAMPEKDIVSWSTMIQGYAFNGL 296

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
            ++AL LF +MQ+ N++PD +T+V +L+ACA LGAL+LG W  + +D+N+  ++  +G A
Sbjct: 297 PQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTA 356

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDMY KCG V +A  +F  M RKD+  W AM+VGL++NGH      +FS + +  I PD
Sbjct: 357 LIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPD 416

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
           E T++G+L  CTH G V+EGR++F +M     + P+  HYGCMVDLLGRAG LNEA ++I
Sbjct: 417 ENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLI 476

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
            NMPMKPN++VWGALLG C++H+D  +AE   K+++EL+P N   YV L NIY+  +RW+
Sbjct: 477 NNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWE 536

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
              ++R  + ++ I+K   CS IE++G+VHEF+ GDKSH  +++IY KLDE+  +LK VG
Sbjct: 537 EAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVG 596

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           ++P    V  D+ EE+KE  +  HSEKLA+AFGLI+S P   IR+VKNLR+C DCH   K
Sbjct: 597 HVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIK 656

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           L+S +  RE+I+RD  RFH F  GSCSC+DYW
Sbjct: 657 LISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 292/703 (41%), Positives = 435/703 (61%), Gaps = 5/703 (0%)

Query: 23  IETCESMHQLKQIHSQTIKLGL----LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           + +C+++  +KQIH+Q ++  +    L    +     T        + YA  +F  IP P
Sbjct: 19  LASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPNP 78

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
                N +++ +SR  + +N + +YL + ++    D ++FP LLK  ++  A+  G E+H
Sbjct: 79  PTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIH 138

Query: 139 CHVLKFGF-DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
               KFGF  +  F+Q+ALI+ Y  CG +  AR +FD     DVVTWN M  GY +   +
Sbjct: 139 GLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHY 198

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           D   KL+ EM+  G  P ++ +  VLSACA   +L  GK  H+++K+        ++ +L
Sbjct: 199 DHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSL 258

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            +MYA CG M  A E++  + +K ++  TA+++GY   G V  AR  FD+M E+D V W+
Sbjct: 259 VNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWS 318

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           AMI GY    +  EAL LF EMQ   I PD+ T++S+++ACAN+GAL   +W+ TY DKN
Sbjct: 319 AMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKN 378

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
                + + NALIDMY KCG++ KA+ VF  M RK+  +W++MI   A++G  D ++ +F
Sbjct: 379 GFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALF 438

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
            +M   +I P+ VT++GVL AC+H G+V+EG+++F+ M  +H I P   HYGCMVDL  R
Sbjct: 439 HRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCR 498

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
           A HL +A+E+I+ MP  PN I+WG+L+ AC+ H + E+ E AA ++LEL+PD++   V+L
Sbjct: 499 ANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVL 558

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            NIYA   RWD+   +R+++  +G+ K   CS IE+N  VH F+  D+ H Q+ EIY KL
Sbjct: 559 SNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKL 618

Query: 618 DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
           D + S LK VGY P  S + +D+ EE+K+  V  HSEKLA+ +GLI       IRIVKNL
Sbjct: 619 DAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNL 678

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+C DCH   KLVS V+  E+++RD+TRFHHF  G CSC+DYW
Sbjct: 679 RICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/719 (41%), Positives = 437/719 (60%), Gaps = 37/719 (5%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           +S   P S    ++   S ++       L QIH+Q +  GL+ +  +  K V       G
Sbjct: 59  HSDYIPYSGFDFDSFFSSLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVN-ASWNIG 117

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           ++ YA KVF + P PSV LWN +I+GYS  +   + + +Y  M  S V PD +T P +LK
Sbjct: 118 EIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLK 177

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
             +    +E GK +H  + + GF+S VFVQN L++ Y  CG V+ AR +F+     ++V+
Sbjct: 178 ACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVS 237

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           W +M SGY +     E  ++FG+M ++ V P  + +V VL A   ++DL+ GK  H  V 
Sbjct: 238 WTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVV 297

Query: 244 E--CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           +   +  P+L++  +LT MYA CG                               QV +A
Sbjct: 298 KMGLEFEPDLLI--SLTAMYAKCG-------------------------------QVMVA 324

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
           R +FDQM   + ++W AMI GY +     EA+ LF+EM + NIR D  T+ S + ACA +
Sbjct: 325 RSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQV 384

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
           G+L+L +W+  YI+K + +ND+FV  ALIDM+ KCG V+ A+ VF   L KD   W+AMI
Sbjct: 385 GSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMI 444

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
           VG  ++G G  ++D+F  M +A + P++VT+VG+L+AC H+G+V+EG E F  M   +GI
Sbjct: 445 VGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKY-YGI 503

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           E    HY C+VDLLGR+GHLNEA + I  MP++P   VWGALLGAC+++R   + E AA+
Sbjct: 504 EARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAE 563

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           Q+  LDP N   YV L N+YA+   WD+  ++R ++ ++G+ K  G S+IE+NG +  F 
Sbjct: 564 QLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFR 623

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
            GDKSHP+ KEI+ +L+ +   LK  G++P I  V  D+ +E+KE  +  HSE+LA+A+G
Sbjct: 624 VGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYG 683

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LIS+ PG T+RI KNLR C++CH   KL+S + +RE++VRD  RFHHFK+G CSC+DYW
Sbjct: 684 LISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 289/692 (41%), Positives = 423/692 (61%), Gaps = 32/692 (4%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
            +QLK IH++ ++L L  +  + N L+  C  + G   Y+  VF ++  P++ LWNTMI+
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLN-LILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIR 87

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
           G    D   + + +Y  M      P+N+T PF+LK   R + V  G ++H  ++K G+D 
Sbjct: 88  GLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDH 147

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
            VFV+ +L+S Y  C   D A  +FD     +VV+W A+ +GY     F E    F ++ 
Sbjct: 148 DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
             G+ P S ++V VL+ACA+L D   G+   RY+ +  +  N+ +  +L DMY  CG + 
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNL- 266

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
                                         + A   F  MPE+D V W+ MI GY     
Sbjct: 267 ------------------------------ERANLIFSAMPEKDIVSWSTMIQGYAFNGL 296

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
            ++AL LF +MQ+ N++PD +T+V +L+ACA LGAL+LG W  + +D+N+  ++  +G A
Sbjct: 297 PQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTA 356

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDMY KCG V +A  +F  M +KD+  W AM+VGL++NGH      +FS + +  I PD
Sbjct: 357 LIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPD 416

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
           E T++G+L  CTH G V+EGR++F +M     + P+  HYGCMVDLLGRAG LNEA ++I
Sbjct: 417 ENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLI 476

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
            NMPMKPN++VWGALLG C++H+D  +AE   K+++EL+P N   YV L NIY+  +RW+
Sbjct: 477 NNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWE 536

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
              ++R  + ++ I+K   CS IE++G+VHEF+ GDKSH  +++IY KLDE+  +LK VG
Sbjct: 537 EAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVG 596

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           ++P    V  D+ EE+KE  +  HSEKLA+AFGLI+S P   IR+VKNLR+C DCH   K
Sbjct: 597 HVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIK 656

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           L+S +  RE+I+RD  RFH F  GSCSC+DYW
Sbjct: 657 LISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 300/738 (40%), Positives = 438/738 (59%), Gaps = 66/738 (8%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGD-MKYACKVFRKI 75
           P +S +  C+++  L+ IH+Q IK GL       +KL+ FC  S   D + YA  VF  I
Sbjct: 4   PSLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETI 63

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
             P++ +WNTM +G++      + + +Y+ M+   + P+ YTFPFLLK   +  A   G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQ 123

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------VSYK---------- 178
           ++H HVLK G+D  ++V  +LIS Y   G ++ AR +FD       VSY           
Sbjct: 124 QIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKG 183

Query: 179 --------------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
                          DVV+WNAM SGY       E  +LF EM +  V P   T+V V+S
Sbjct: 184 YIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVS 243

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           ACA+   +++G++ H ++ +     NL + NAL D+Y  CGE                  
Sbjct: 244 ACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE------------------ 285

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                        V+ A   F+ +  +D + W  +I GY  +N ++EAL LF+EM  S  
Sbjct: 286 -------------VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 332

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDK--NKVKNDIFVGNALIDMYCKCGDVEKA 402
            P++ T++SIL ACA+LGA+E+G W+  YI+K    V N      +LIDMY KCGD+E A
Sbjct: 333 SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 392

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           Q+VF  +L +   +W AMI G A++G  + + D+FS+M +  I PD++T+VG+LSAC+H+
Sbjct: 393 QQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 452

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           GM+D GR  F  M   + I P   HYGCM+DLLG +G   EA E+I  M M+P+ ++W +
Sbjct: 453 GMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 512

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL AC+++ + E+ E  A+ +++++P N   YVLL NIYA   RW+   ++R ++ D+G+
Sbjct: 513 LLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGM 572

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK PGCS IE++ VVHEF+ GDK HP+ +EIY  L+EM   L+  G++PD SEV  ++ E
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E KE A+  HSEKLA+AFGLIS+ PG  + IVKNLR+C +CH   KL+S +Y RE+I RD
Sbjct: 633 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 703 KTRFHHFKHGSCSCKDYW 720
           +TRFHHF+ G CSC DYW
Sbjct: 693 RTRFHHFRDGVCSCNDYW 710


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/695 (43%), Positives = 419/695 (60%), Gaps = 33/695 (4%)

Query: 27  ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
           +S+HQ KQ H   ++LGL  +  + N L+          +YA  VF + P P++ L+NT+
Sbjct: 14  KSLHQAKQCHCLLLRLGLHQDTYLINLLLR-SSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFG 145
           I+G    D+ ++ V +Y  M +    PDN+TFPF+LK  TR       G  LH  V+K G
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTG 132

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           FD  VFV+  L+  Y   G +  AR +FD   + +VV+W A+  GY     F E   LF 
Sbjct: 133 FDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFR 192

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
            +   G+ P S T+V +L AC+++ DL  G+    Y++E   V N+ +  +L DMYA CG
Sbjct: 193 GLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCG 252

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            M                               + AR+ FD M E+D V W+A+I GY  
Sbjct: 253 SM-------------------------------EEARRVFDGMVEKDVVCWSALIQGYAS 281

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
               +EAL +F EMQ  N+RPD + +V + +AC+ LGALELG W +  +D ++  ++  +
Sbjct: 282 NGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVL 341

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
           G ALID Y KCG V +A+ VF+ M RKD   + A+I GLA+ GH   +  +F QM++  +
Sbjct: 342 GTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGM 401

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
            PD  T+VG+L  CTH G+VD+G  YF+ M+    + P   HYGCMVDL  RAG L EA 
Sbjct: 402 QPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQ 461

Query: 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
           ++I++MPM+ NSIVWGALLG CR+H+D ++AE   KQ++EL+P N   YVLL NIY+A +
Sbjct: 462 DLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASH 521

Query: 566 RWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625
           RWD   ++R  +  +G++K PGCS +E++GVVHEF+ GD SHP + +IY KL+ +  DL+
Sbjct: 522 RWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLR 581

Query: 626 FVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHR 685
             GY P    V  DV EE+KE  +  HSEKLA+AF LIS+G    IR+VKNLR+C DCH 
Sbjct: 582 EAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHE 641

Query: 686 MAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             KLVS V  RE+IVRD  RFHHF  GSCSC+DYW
Sbjct: 642 AIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  586 bits (1511), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 297/738 (40%), Positives = 441/738 (59%), Gaps = 66/738 (8%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGD-MKYACKVFRKI 75
           P +S +  C+++  L+ IH+Q IK GL       +KL+  C  S   D + YA  VF  I
Sbjct: 4   PSLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTI 63

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
             P + +WNTM +G++      + + +Y+ M+   + P++YTFPFLLK   +  A + G+
Sbjct: 64  QEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQ 123

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------VSYK---------- 178
           +LH  VLKFGFD  +++  +LIS Y   G ++ A+ + D       VSY           
Sbjct: 124 QLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRG 183

Query: 179 --------------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
                          DVV+WNA  SGY     + E  +LF +M +  V P   T+V VLS
Sbjct: 184 XIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLS 243

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           ACA+   +++G++ H ++ +     NL + NAL D+Y+ CGE+  A  +F  + NK    
Sbjct: 244 ACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNK---- 299

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                                      D + W  +I GY  +N ++EAL LF++M  S  
Sbjct: 300 ---------------------------DVISWNTLIGGYTHMNLYKEALLLFQDMLRSGE 332

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDK--NKVKNDIFVGNALIDMYCKCGDVEKA 402
           +P++ T++SIL+ACA+LGA+++G W+  YIDK    V N   +  +LIDMY KCGD+E A
Sbjct: 333 KPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 392

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           Q+VF  ML +   +W AMI G A++G  + + D+FS+M +  I PD++T+VG+LSAC+H+
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           GM+D GR  F  MT  + + P   HYGCM+DL G +G   EA ++I  M M+P+ ++W +
Sbjct: 453 GMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCS 512

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL AC++H + E+ E  A+ +++++P+N   YVLL NIYA   RW+   + R ++ D+G+
Sbjct: 513 LLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGM 572

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK PGCS IE++ VVHEF+ GDK HP+ +EIY  L+EM   L+  G++PD SEV  ++ E
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E KE A+  HSEKLA+AFGLIS+ PG  + IVKNLR+C +CH   KL+S +Y RE+I RD
Sbjct: 633 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 703 KTRFHHFKHGSCSCKDYW 720
           +TRFHHF+ G CSC DYW
Sbjct: 693 RTRFHHFRDGECSCNDYW 710


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 294/698 (42%), Positives = 422/698 (60%), Gaps = 32/698 (4%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           I+    +  LK IH+  ++LGL  +  + NK++ F  +  G+  Y+ ++  +   P++ L
Sbjct: 17  IQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFN-FGNTNYSFRILDQTKEPNIFL 75

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           +NTMI+G    D  +  + IY  M K  + PD++TFPF+LK   R +  E G ++H  V+
Sbjct: 76  FNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVV 135

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K G ++  FV+ +LI+ Y  CG +D A  +FD     +  +W A  SGY  V +  E   
Sbjct: 136 KAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAID 195

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           +F  +   G+ P S ++V VLSAC +  DL  G+    Y+ E  +V N+ +  AL D Y 
Sbjct: 196 MFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYG 255

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG M                               + AR  FD M E++ V W++MI G
Sbjct: 256 KCGNM-------------------------------ERARSVFDGMLEKNIVSWSSMIQG 284

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           Y      +EAL LF +M    ++PD + +V +L +CA LGALELG+W    I+ N+  ++
Sbjct: 285 YASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDN 344

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
             +G ALIDMY KCG +++A  VFR M +KD+  W A I GLA++GH   +L +F QM +
Sbjct: 345 SVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEK 404

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
           + I PD  T+VG+L ACTH G+V+EGR YF  M     + P   HYGCMVDLLGRAG L+
Sbjct: 405 SGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLD 464

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           EA ++IK+MPM+ N+IVWGALLG CR+HRD ++ E+  K+++ L+P +   YVLL NIYA
Sbjct: 465 EAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYA 524

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
           A ++W+   ++R ++ +RG+KK PG S IE++GVVH+F+ GD SHP +++IY KL E+  
Sbjct: 525 ASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAK 584

Query: 623 DLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
           DLK  GY+P    V  D+ EE+KE  +  HSEKLA+AFGLIS+ P   I +VKNLR+C D
Sbjct: 585 DLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGD 644

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           CH   K +S +  RE+IVRD  RFH F  G CSCKDYW
Sbjct: 645 CHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 273/617 (44%), Positives = 411/617 (66%), Gaps = 2/617 (0%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKI 75
            P +S +E C+S+ QLKQI SQ +  GL+ +    ++L+ FC  SE  D+ Y   +    
Sbjct: 7   NPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNT 66

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFG 134
             P+   WN  I+G+   ++ +  V++Y  +L+ D  +PDNYT+P L K   R   +  G
Sbjct: 67  RNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMG 126

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
            E+  HVL  GFDS +FV NA+I     CG++D AR +FD S   D+V+WN+M +GY R 
Sbjct: 127 SEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRR 186

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
               E    + EM+ +G+ P  VT++ V+S+CA+L+DLD+G+ +H Y++E  +   + L 
Sbjct: 187 GWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLA 246

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           NAL DMY  CG +  A ++F ++ NK ++SWT +V GY   G +DMA + FD+MP++D V
Sbjct: 247 NALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVV 306

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W AMI GY+  NR +EAL LF EMQ  NI PDE T+VS L+AC+ LGAL++G W+  YI
Sbjct: 307 PWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYI 366

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           +K+++  ++ +G ALIDMY KCG + KA +VF+E+  ++  TWTA+I GLA++G+   ++
Sbjct: 367 EKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAI 426

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
             FS+M+  S++PDEVT++G+LSAC H G+V+EGR+YF+ M+ +  + P   HY CMVDL
Sbjct: 427 AYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDL 486

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L EA E+IK+MP++ +++VWGAL  ACR+H +  M E AA ++L++DP +  +Y
Sbjct: 487 LGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIY 546

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL N+Y     W    + R+++  RG++KTPGCS IE+NG+V+EF+  DKSHPQ+++IY
Sbjct: 547 VLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIY 606

Query: 615 LKLDEMTSDLKFVGYMP 631
             L ++T  L+ V   P
Sbjct: 607 ECLIQLTRQLELVECTP 623


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 298/725 (41%), Positives = 430/725 (59%), Gaps = 66/725 (9%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGD-MKYACKVFRKIPRPSVCLWNTMIK 88
            L+ IH+Q IK GL       +KL+ FC  S   D + YA  VF  I  P++ +WNTM +
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
           G++      + + +Y+ M+   + P+ YTFPFLLK   +  A   G+++H HVLK G+D 
Sbjct: 62  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121

Query: 149 SVFVQNALISTYCLCGEVDMARGIFD-------VSYK----------------------- 178
            ++V  +LIS Y   G ++ AR +FD       VSY                        
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIP 181

Query: 179 -DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
             DVV+WNAM SGY       E  +LF EM +  V P   T+V V+SACA+   +++G++
Sbjct: 182 IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ 241

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H ++ +     NL + NAL D+Y  CGE                               
Sbjct: 242 VHSWIDDHGFGSNLKIVNALIDLYIKCGE------------------------------- 270

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
           V+ A   F+ +  +D + W  +I GY  +N ++EAL LF+EM  S   P++ T++SIL A
Sbjct: 271 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 330

Query: 358 CANLGALELGEWVKTYIDK--NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
           CA+LGA+E+G W+  YI+K    V N      +LIDMY KCGD+E AQ+VF  +L +   
Sbjct: 331 CAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLS 390

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           +W AMI G A++G  + + D+FS+M +  I PD++T+VG+LSAC+H+GM+D GR  F  M
Sbjct: 391 SWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 450

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535
              + I P   HYGCM+DLLG +G   EA E+I  M M+P+ ++W +LL AC++H + E+
Sbjct: 451 KEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVEL 510

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
            E  A+ +++++P N   YVLL NIYA   RW+   ++R ++ D+G+KK PGCS IE++ 
Sbjct: 511 GESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDS 570

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
           VVHEF+ GDK HP+ +EIY  L+EM   L+  G++PD SEV  ++ EE KE A+  HSEK
Sbjct: 571 VVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEK 630

Query: 656 LAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715
           LA+AFGLIS+ PG  + IVKNLR+C +CH   KL+S +Y RE+I RD+TRFHHF+ G CS
Sbjct: 631 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCS 690

Query: 716 CKDYW 720
           C DYW
Sbjct: 691 CNDYW 695


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 298/734 (40%), Positives = 434/734 (59%), Gaps = 66/734 (8%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGD-MKYACKVFRKI 75
           P +S +  C+++  L+ IH++ IK GL       +KL+ F   S   D + YA  VF  I
Sbjct: 4   PSLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
             P++ +WNTM +G++      + + +Y+ M+   + P++YTFPFLLK   +  A   G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQ 123

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------VSYK---------- 178
           ++H HVLK G D  ++V  +LI+ Y   G  + AR +FD       VSY           
Sbjct: 124 QIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNG 183

Query: 179 --------------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
                          DVV+WNA+ SGY     + E  +LF EM +  V P   T+V VLS
Sbjct: 184 YIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLS 243

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           ACA+   +++G++ H ++ +     NL + NAL D+Y  CGE                  
Sbjct: 244 ACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE------------------ 285

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                        V+ A   F+ +  +D + W  +I GY  +N ++EAL LF+EM  S  
Sbjct: 286 -------------VETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 332

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDK--NKVKNDIFVGNALIDMYCKCGDVEKA 402
            P+E T++SIL ACA+LGA+++G W+  YIDK    V N   +  +LIDMY KCGD+E A
Sbjct: 333 SPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAA 392

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           Q+VF  ML +   +W AMI G A++G  + + D+FS+M +  I PD++T+VG+LSAC+H+
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHS 452

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           GM+D GR  F  MT  + I P   HYGCM+DLLG +G   EA E+I +M M P+ ++W +
Sbjct: 453 GMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCS 512

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL AC++H + E+ E  A+ +++++P N   YVLL NIYA   RW+   + R ++ D+G+
Sbjct: 513 LLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGM 572

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK PGCS IE++ VVHEF+ GDK HP+ +EIY  L+EM   L+  G++PD SEV  ++ E
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E KE A+  HSEKLA+AFGLIS+ PG  + IVKNLR+C +CH   KL+S +Y RE+I RD
Sbjct: 633 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 703 KTRFHHFKHGSCSC 716
           +TRFHHF  G CSC
Sbjct: 693 RTRFHHFXDGVCSC 706


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 304/772 (39%), Positives = 448/772 (58%), Gaps = 68/772 (8%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG--DMKYACKVFRK 74
           + L S +++C+     KQ+ SQTI  GL+T+P   ++L+ F           Y+ ++F  
Sbjct: 4   STLDSLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNH 63

Query: 75  IPRPSVCLWNTMIKGYSRI-DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           +  P+   WNT+++ +  + +S    +L Y   L S  +PD+YT+P LL+     ++   
Sbjct: 64  LRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFE 123

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G++LH H +  GFD  V+V+N L++ Y +CG V  AR +F+ S   D+V+WN + +GY +
Sbjct: 124 GRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQ 183

Query: 194 VKQFDETRKLF-GEMERKGVLPTSVTIVLVLSAC------------AKLKDL-------- 232
             + +E  ++F G  ER  +   S+  +     C             + +D+        
Sbjct: 184 AGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVS 243

Query: 233 -----DVGKRAHRYVKECKIVPNLILENALTDMYAACG-----EMGFALEIFG-NIKNKD 281
                ++G+ A     E K     + E  +    +AC      EMG  +      +  +D
Sbjct: 244 CYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVED 303

Query: 282 VISW-TAIVTGYINRGQVDMARQYFDQMPE-RDYVLWTAMIDGYLRVNR----------- 328
            +S   A++  Y + G++  AR+ FD   E  D + W +MI GYLR              
Sbjct: 304 YVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSM 363

Query: 329 --------------------FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                               F EAL LF+EMQ   +RPDE  +VS ++AC +L  L+LG+
Sbjct: 364 PEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGK 423

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           W+  YI +NK++ ++ +   LIDMY KCG VE A  VF  M  K   TW A+I+GLA+NG
Sbjct: 424 WIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNG 483

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
             ++SL+MF+ M +   +P+E+T++GVL AC H G+V++GR YF  M  +H IE N  HY
Sbjct: 484 SVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHY 543

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
           GCMVDLLGRAG L EA E+I +MPM P+   WGALLGACR HRD EM E   +++++L P
Sbjct: 544 GCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQP 603

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
           D++  +VLL NIYA+   W N  E+R ++   G+ KTPGCSMIE NG VHEF+AGDK+HP
Sbjct: 604 DHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHP 663

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPG 668
           Q  +I   LD + + LK  GY+P  SEV LD+ EE+KE A+++HSEKLA+AFGLI+  P 
Sbjct: 664 QINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPP 723

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             IR+ KNLR+C DCH + KL+S  +DR+++VRD+ RFHHFKHG+CSC D+W
Sbjct: 724 TPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/694 (41%), Positives = 426/694 (61%), Gaps = 36/694 (5%)

Query: 32  LKQIHSQTIKLGLLTNPTVQ-NKLVTFCCSEKGDMKYACKVFRKIPRP--SVCLWNTMIK 88
           L Q+H+  IK G LT      + L+    +    + YA  +FR  PRP  S   +N +++
Sbjct: 32  LPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMR 91

Query: 89  GYSRIDSHKNGVLIYLDML--KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
            +      ++ + ++++ML   S    D +T    LK  +R  A++ G+ +  + +K G 
Sbjct: 92  AFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGL 151

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
            +  FV ++LI  Y  CG+V  AR +FD + +  VV WNA+ + Y +   + E  ++F  
Sbjct: 152 VADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKG 211

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M   GV    VT+V V++AC ++ D  +GK    +V E  +  N  L  AL DMYA CGE
Sbjct: 212 MLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGE 271

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +G                                AR+ FD M  RD V W+AMI GY + 
Sbjct: 272 IG-------------------------------KARRLFDGMQSRDVVAWSAMISGYTQA 300

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
           ++ REAL LF EMQ + + P++ T+VS+L+ACA LGALE G+WV +Y+ + ++     +G
Sbjct: 301 DQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILG 360

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
            AL+D Y KCG ++ A   F  M  K+ +TWTA+I G+A NG G ++L++FS M  A I 
Sbjct: 361 TALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIE 420

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P +VT++GVL AC+H+ +V+EGR +F  M   +GI+P   HYGCMVDLLGRAG ++EA +
Sbjct: 421 PTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQ 480

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
            I+ MP++PN+++W ALL +C VHR+  + E A KQI+ L+P +   YVLL NIYA+  +
Sbjct: 481 FIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQ 540

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           W +   +R+ + DRGI+KTPGCS+IE++GVV EF A D  HP+ +EIY K++EM   +K 
Sbjct: 541 WKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKV 600

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            GY+P+ ++V L+V E +KE +V  HSEKLA+AFGL+   PG TIR+ KNLR+C DCH  
Sbjct: 601 AGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSA 660

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            KL+S VYDRE++VRD+  FHHFK G+CSC DYW
Sbjct: 661 TKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 199/443 (44%), Gaps = 46/443 (10%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           M   +S  P    T    L S    C ++   + + +  +K GL+ +  V + L+    S
Sbjct: 109 MLHAASACPADQHTAACALKSCSRMC-ALDVGRGVQAYAVKRGLVADRFVLSSLIHMYAS 167

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
             GD+  A  VF       V +WN ++  Y +       V ++  ML+  V  D  T   
Sbjct: 168 -CGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVS 226

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           ++    R    + GK +  HV + G   +  +  AL+  Y  CGE+  AR +FD     D
Sbjct: 227 VVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRD 286

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           VV W+AM SGY +  Q  E   LF EM+   V P  VT+V VLSACA L  L+ GK  H 
Sbjct: 287 VVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHS 346

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           YV+  ++    IL  AL D YA CG +  A+E F ++  K+  +WTA++ G    G    
Sbjct: 347 YVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNG---- 402

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
                                      R REAL LF  M+ + I P + T + +L AC++
Sbjct: 403 ---------------------------RGREALELFSSMREAGIEPTDVTFIGVLMACSH 435

Query: 361 LGALELG-----EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
              +E G        + Y  K +V++       ++D+  + G V++A +  R M +  + 
Sbjct: 436 SCLVEEGRRHFDSMARDYGIKPRVEHY----GCMVDLLGRAGLVDEAYQFIRTMPIEPNA 491

Query: 415 FTWTAMIVGLAIN---GHGDKSL 434
             W A++   A++   G G+++L
Sbjct: 492 VIWRALLSSCAVHRNVGIGEEAL 514



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 148/343 (43%), Gaps = 21/343 (6%)

Query: 16  ETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           E  L+S +  C  +   K    +     + GL  NP +   L+    ++ G++  A ++F
Sbjct: 221 EVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMY-AKCGEIGKARRLF 279

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             +    V  W+ MI GY++ D  +  + ++ +M  + V P++ T   +L       A+E
Sbjct: 280 DGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALE 339

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            GK +H +V +     +  +  AL+  Y  CG +D A   F+     +  TW A+  G  
Sbjct: 340 TGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMA 399

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNL 251
              +  E  +LF  M   G+ PT VT + VL AC+    ++ G+R      ++  I P +
Sbjct: 400 TNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRV 459

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKN----KDVISWTAIVTGYINRGQVDMARQYFDQ 307
                + D+    G  G   E +  I+      + + W A+++       V +  +   Q
Sbjct: 460 EHYGCMVDLL---GRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQ 516

Query: 308 M----PER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           +    P    DYVL + +   Y    ++++A  + +EM+   I
Sbjct: 517 IISLNPSHSGDYVLLSNI---YASAGQWKDAAMVRKEMKDRGI 556


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 297/704 (42%), Positives = 423/704 (60%), Gaps = 66/704 (9%)

Query: 52  NKLVTFCC-SEKGD-MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS 109
           +KL+ FC  S   D   YA  VF  I  P+  +WNTM++GY+      + + +Y+ M+  
Sbjct: 1   SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISL 60

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
            + P++YTFPFLLK   +  A E G+++H HVLK G++  ++V  +LIS Y   G ++ A
Sbjct: 61  GLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDA 120

Query: 170 RGIFD-------VSYK------------------------DDVVTWNAMFSGYKRVKQFD 198
             +FD       VSY                          DVV+WNAM SGY     + 
Sbjct: 121 HKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYK 180

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E  +LF EM +  V P   T+V VLSACA+ + +++G++ H ++ +     NL + NAL 
Sbjct: 181 EALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALI 240

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           D+Y+ CG                               QV+ A   F+ +  +D V W  
Sbjct: 241 DLYSKCG-------------------------------QVETACGLFEGLSCKDVVSWNT 269

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN- 377
           +I GY  +N ++EAL LF+EM  S   P++ TIVSIL ACA+LGA+++G W+  YIDK  
Sbjct: 270 LIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKL 329

Query: 378 -KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
             V N   +  +LIDMY KCGD+E A +VF  ML K   +W AMI G A++G  +   D+
Sbjct: 330 KDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDL 389

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           FS+M +  I PD++T+VG+LSAC+H+G +D GR  F  MT  + I P   HYGCM+DLLG
Sbjct: 390 FSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLG 449

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
            +G   EA E+IK MPM+P+ ++W +LL ACR H + E+AE  A+ +++++P+N   YVL
Sbjct: 450 HSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVL 509

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L NIYA    WD   ++R ++  +G+KK PGCS IE++  VHEF+ GDK HP+ +EIY  
Sbjct: 510 LSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGM 569

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L+EM + L+  G++PD SEV  ++ EE KE A+  HSEKLA+AFGLIS+ PG  + IVKN
Sbjct: 570 LEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 629

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C +CH   KLVS +Y RE+I RD+TRFHHF+ G CSC D+W
Sbjct: 630 LRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 302/743 (40%), Positives = 454/743 (61%), Gaps = 45/743 (6%)

Query: 21  SPIETCESMHQLKQIHSQTIKLG--LLTNPTVQ---NKLVTFCCSEKGDMKYACKVFRKI 75
           +P  T  ++ Q  ++H++    G  LL  P+ +   N LV         ++YA  +F ++
Sbjct: 4   APWPTPRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRM 63

Query: 76  PRPSVCLWNTMIKGYSRI--DSHKNGVLIYLDMLKSDVRPDNYTFPFLLK---GFTRDIA 130
           P PS  L++T ++  SR   D H+   L++  M ++ VRPD +TF FL K     +R  +
Sbjct: 64  P-PSTFLFDTALRACSRAGSDPHRP-FLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHS 121

Query: 131 VEFGKELHCHVLKFGFDSSV-FVQNALISTYCLCGEVDMARGIFD-VSYKD--------- 179
           +     LH   L+    S+  FV N+LI  Y   G    AR  FD +  KD         
Sbjct: 122 LLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLIS 181

Query: 180 ---------------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
                                DV++W ++ + Y R  +  E    F  M   G+ P  VT
Sbjct: 182 GLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVT 241

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI- 277
           ++ VLSACAKLKDL++G+  H  V+E  +  +  L  AL DMYA CG+ G A ++F  + 
Sbjct: 242 VIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALG 301

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
           +     SW AI+ GY   G VD+AR  FD+M  RD + + +M+ GY+   + REAL LF 
Sbjct: 302 RGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFM 361

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
            M+  ++R D FT+V++LTACA+LGAL+ G  +   I++  V+ DI++G AL+DMY KCG
Sbjct: 362 SMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCG 421

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            V++A  VF+ M ++D  TWTAMI GLA NG G  +L+ F QM      P+ V+Y+ VL+
Sbjct: 422 RVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLT 481

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           AC+H+ +++EGR YF +M I + I P   HYGCM+DLLGR+G L+EA++++K MP++PN+
Sbjct: 482 ACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNA 541

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
           ++W ++L ACRVH+  ++A+ AA+ +L+L+PD + VYV L NIY    +W+N  ++R ++
Sbjct: 542 VIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLM 601

Query: 578 LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF 637
            +R +KKT G S I + G VH+FV  DKSHP+  EI   L+E++  LK +GY P  S++ 
Sbjct: 602 EERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQIT 661

Query: 638 LDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDRE 697
           +DV EE+KE+A+  HSEKLA+AFGLI+  P + + I KNLR+C DCH   KL+S +++RE
Sbjct: 662 VDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNRE 721

Query: 698 VIVRDKTRFHHFKHGSCSCKDYW 720
           +IVRD++RFHHF+ G+CSC D+W
Sbjct: 722 IIVRDRSRFHHFREGTCSCNDFW 744


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 276/705 (39%), Positives = 423/705 (60%), Gaps = 35/705 (4%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            +S I+ C S   L   +++H   I  G  ++  V   L +   ++ G ++ A +VF ++
Sbjct: 123 FLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMY-TKCGSLENARQVFDRM 181

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P+  V  WN +I GYS+       + ++ +M  + ++P++ T   ++      +A+E GK
Sbjct: 182 PKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGK 241

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++HC+ ++ G +S V V N L++ Y  CG V+ A  +F+     DV +WNA+  GY    
Sbjct: 242 QIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNS 301

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           Q  E    F  M+ +G+ P S+T+V VL ACA L  L+ G++ H Y        N ++ N
Sbjct: 302 QHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGN 361

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           AL +MYA CG                                V+ A + F++MP+++ V 
Sbjct: 362 ALVNMYAKCGN-------------------------------VNSAYKLFERMPKKNVVA 390

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           W A+I GY +     EAL LF EMQ   I+PD F IVS+L ACA+  ALE G+ +  Y  
Sbjct: 391 WNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTI 450

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
           ++  ++++ VG  L+D+Y KCG+V  AQ++F  M  +D  +WT MI+   I+GHG+ +L 
Sbjct: 451 RSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALA 510

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +FS+M       D + +  +L+AC+H G+VD+G +YF  M   +G+ P   HY C+VDLL
Sbjct: 511 LFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLL 570

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
           GRAGHL+EA  +IKNM ++P++ VWGALLGACR+H + E+ E AAK + ELDPDN   YV
Sbjct: 571 GRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYV 630

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
           LL NIYA   RW++  +LR+M+ ++G+KK PGCS++ ++  V  F+ GD++HPQ+++IY 
Sbjct: 631 LLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYA 690

Query: 616 KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
            L+ +   ++  GY+P+ +    DV EE KE  +  HSEKLA++FG+I++ PG+ IRI+K
Sbjct: 691 MLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMK 750

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH   K +S +  RE+IVRD  RFHH K+G CSC DYW
Sbjct: 751 NLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 2/117 (1%)

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
           +R +   W   I+G   NG  +K+L ++ QM R  I PD++ ++ V+ AC     +  GR
Sbjct: 81  IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGR 140

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           +   D+ I  G E +      +  +  + G L  A +V   MP K + + W A++  
Sbjct: 141 KVHEDI-IARGFESDVIVGTALASMYTKCGSLENARQVFDRMP-KRDVVSWNAIIAG 195


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 302/740 (40%), Positives = 449/740 (60%), Gaps = 41/740 (5%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT-----FCCSEKGDMKYACKVFRKI 75
           +P  T  S+ Q  ++H+  +  G L +P   + L+      F  ++   ++YA  +F ++
Sbjct: 4   APWPTPRSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRM 63

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLI-YLDMLKSDVRPDNYTFPFLLKGFTRDIA-VEF 133
           P  S  L++T ++   R  S     LI Y  M ++ V  D +TF FL K   R  A V  
Sbjct: 64  P-CSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLL 122

Query: 134 GKELHCHVLKFGFDSSV-FVQNALISTYCLCGEVDMARGIFD-VSYKD------------ 179
            + LH    +    S+V  V N +I  Y   G    AR  FD +  KD            
Sbjct: 123 CQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLA 182

Query: 180 ------------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221
                             +V++W  + SGY R  +  E    F  M   G+ P  VT++ 
Sbjct: 183 KLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIG 242

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI-KNK 280
           +LSACA+LKDL  G+  H+ V E  ++ +  L  AL DMYA CG++G A E+F  + + +
Sbjct: 243 LLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGR 302

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
              SW A++ GY   G VD+AR  FDQM +RD V + ++I GY+   R REAL LF +M+
Sbjct: 303 RPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMR 362

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
             ++R D FT+VS+LTACA+LGAL  G  +   I++  V+ DI++G AL+DMY KCG VE
Sbjct: 363 RHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVE 422

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
           +A  VF+ M  +D  TW+AMI GLA NG G  +L+ F  M      P+ VTY+ +L+AC+
Sbjct: 423 EASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACS 482

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           H+ ++DEGR YF +M + H I P   HYGCM+DLLGR+G L+EA+++++ MPM+PN+++W
Sbjct: 483 HSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIW 542

Query: 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
            ++L ACRVH+DA +A  AA+ +L+L+PD +AVYV L NIY    +W++  ++R+++ +R
Sbjct: 543 ASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEER 602

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
           G+KK  G S I + G VH+F+  D++HPQ  EI   ++E+T  LK VGY P  S++ +DV
Sbjct: 603 GVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDV 662

Query: 641 GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIV 700
            EE+KE A+  HSEK+A+AFGLIS  P + + I+KNLR+C DCH   KL+S +++RE+IV
Sbjct: 663 DEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIV 722

Query: 701 RDKTRFHHFKHGSCSCKDYW 720
           RD++RFHHF+ G+CSC D+W
Sbjct: 723 RDRSRFHHFRDGTCSCNDFW 742


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/738 (39%), Positives = 430/738 (58%), Gaps = 66/738 (8%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG--DMKYACKVFRKI 75
           P +S +  C+++  L+ IH+Q IK GL       ++L+ FC        + YA  VF  I
Sbjct: 4   PSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETI 63

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
             P++ +WNTM +G++      + + +Y+ M+   + P++YTFPFLLK   +    + G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQ 123

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------VSYK---------- 178
           ++H HVLK G++  ++V  +LIS Y   G    A  +FD       VSY           
Sbjct: 124 QIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRG 183

Query: 179 --------------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
                          DVV+WNA+ SGY       E   LF EM +  V P   T+V V+S
Sbjct: 184 YIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVS 243

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           ACA+   + +G++ H ++ +  +  NL + NAL D+Y+ CGE+  A  +F  + N     
Sbjct: 244 ACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSN----- 298

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                                     +D + W  MI GY  +N ++EAL LF+EM  S  
Sbjct: 299 --------------------------KDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGE 332

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDK--NKVKNDIFVGNALIDMYCKCGDVEKA 402
            P++ T++SIL ACA LGA++ G W+  YIDK    V N   +  +LIDMY KCGD+E A
Sbjct: 333 NPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAA 392

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
            +VF  M  +      AMI G A++G  + + D+FS+M +  I PD++T+VG+LSAC+H+
Sbjct: 393 HQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           GM+D GR  F  MT  + I P   HYGCM+DLLG  G   EA E+I  M M+P+ ++W +
Sbjct: 453 GMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCS 512

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL AC++H + E+ E  A+++++++P+N   YVLL NIYA   RW+    +R ++ D+G+
Sbjct: 513 LLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGM 572

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK PGCS IE++ VVHEF+ GDK HP+ +EIY  L+EM   L+  G++PD SEV  ++ E
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E K+ A+  HSEKLA+AFGLIS+ PG  + IVKNLR+C +CH   KL+S +Y RE+I RD
Sbjct: 633 EFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 703 KTRFHHFKHGSCSCKDYW 720
           +TRFHHF+ G CSC DYW
Sbjct: 693 RTRFHHFRDGVCSCNDYW 710


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 274/588 (46%), Positives = 383/588 (65%), Gaps = 3/588 (0%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLC--GEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           ++H   +  G  S  FV + ++S   L   G +  AR +F    K D+   N +   Y  
Sbjct: 53  QIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAF 112

Query: 194 VKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
                +    + EM E   V P   T  L+L AC+++  L +G+  H +V +      + 
Sbjct: 113 SPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVS 172

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + N L  MYA+CG +  A  +F      D  SW  ++ GY+  G    AR+ F+ MP+RD
Sbjct: 173 VSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRD 232

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W+ MI+GY++ +RF+E L LF++M    I P+E  +V+ L+ACA+LGA+E G+W++ 
Sbjct: 233 VVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIER 292

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           Y+++  V+  + +G ALIDMY KCG VE+A  VF +M  K+   W+AMI GLAING G  
Sbjct: 293 YMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKD 352

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L++FSQM    + P+EVT++G+L+AC+H+ +VDEG  +F  MT  +G++PN  H+ CMV
Sbjct: 353 ALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMV 412

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRAG L++A  VIK+MP KPNS +WGALL ACR+H D E+ E   K++LELDP++  
Sbjct: 413 DLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGG 472

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVLL NIYAAC RWD   ELR+M+ +R + KTPGCS I++   +HEFVAGD SHPQ + 
Sbjct: 473 RYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEM 532

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY KL EM+ +LK  GY PD  +V LD+ EE+KE A+  HSEKLA+AFGLI + PG TIR
Sbjct: 533 IYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIR 592

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I KNLR+C DCH   KL+S +Y+RE+IVRD+ RFHHF+ GSCSC D+W
Sbjct: 593 ITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/461 (27%), Positives = 224/461 (48%), Gaps = 68/461 (14%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKY 67
           P   L  + P++  + +C+++  L QIH+QTI  G+ ++  V +++++F   S  G + Y
Sbjct: 28  PTPQLLCKYPILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPY 87

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR-PDNYTFPFLLKGFT 126
           A  +F +I +P + + NT+I+ Y+   +  + V+ Y +M +S V  PD +TFP LLK  +
Sbjct: 88  ARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACS 147

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
              ++  G+ +H HV K G+ S V V N L+  Y  CG ++ A  +FD + + D  +WN 
Sbjct: 148 EIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNI 207

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI--------------------------- 219
           M  GY +   F   R++F  M  + V+  SV I                           
Sbjct: 208 MIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPN 267

Query: 220 --VLV--LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
             VLV  LSACA L  ++ G+   RY++   +   + L  AL DMY+ CG +  ALE+F 
Sbjct: 268 ESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFH 327

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
            +K K+V++W+A++ G    GQ                                ++AL L
Sbjct: 328 KMKEKNVLAWSAMINGLAINGQG-------------------------------KDALNL 356

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYC 394
           F +M+   ++P+E T + IL AC++   ++ G  +  +      +K +      ++D+Y 
Sbjct: 357 FSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYG 416

Query: 395 KCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSL 434
           + G +++AQ V + M  + +   W A++    I  HGD  L
Sbjct: 417 RAGMLDQAQTVIKSMPFKPNSAIWGALLNACRI--HGDTEL 455



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 150/366 (40%), Gaps = 43/366 (11%)

Query: 18  PLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCS-------------- 60
           PL+  ++ C  +  L+    IHS   KLG  +  +V N LV    S              
Sbjct: 140 PLL--LKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRT 197

Query: 61  ----------------EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYL 104
                           + G  K A ++F  +P   V  W+ MI GY +    K G+ ++ 
Sbjct: 198 PECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQ 257

Query: 105 DMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCG 164
           DM+   + P+       L       A+E G+ +  ++ +     +V +  ALI  Y  CG
Sbjct: 258 DMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCG 317

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
            V+ A  +F    + +V+ W+AM +G     Q  +   LF +ME +GV P  VT + +L+
Sbjct: 318 SVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILN 377

Query: 225 ACAKLKDLDVG-KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DV 282
           AC+  K +D G    H       + PN      + D+Y   G +  A  +  ++  K + 
Sbjct: 378 ACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNS 437

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTAMIDGYLRVNRFREALTLF 336
             W A++      G  ++  Q   ++ E D      YVL + +     R +R  E   + 
Sbjct: 438 AIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMM 497

Query: 337 REMQTS 342
           RE Q S
Sbjct: 498 RERQVS 503


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/687 (39%), Positives = 427/687 (62%), Gaps = 1/687 (0%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           Q+H   +K+G   +  V+N L+ F   E G++    +VF K+   +V  W ++I GY++ 
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFY-GECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKR 218

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
             +K  V ++ +M++  +RP++ T   ++    +   ++ G+++   + +   + +  + 
Sbjct: 219 GCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMV 278

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           NAL+  Y  CG +D AR IFD     ++V +N + S Y R     E   + GEM + G  
Sbjct: 279 NALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPR 338

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  +T++  +SAC++L D+  GK  H YV    +     + NA+ +MY  CG+   A  +
Sbjct: 339 PDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRV 398

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  + NK  +SW +++ G++  G ++ A + F  MP+ D V W  MI   ++ + F+EA+
Sbjct: 399 FDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAI 458

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LFR MQ+  I  D+ T+V + +AC  LGAL+L +W+  YI K  +  D+ +G AL+DM+
Sbjct: 459 ELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMF 518

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            +CGD + A +VF +M+++D   WTA I  +A+ G+G  ++++F +ML+  I PD V +V
Sbjct: 519 ARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFV 578

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            +L+A +H G+V++G   F  M   +GI P   HYGCMVDLLGRAG L+EAL +I +M M
Sbjct: 579 ALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQM 638

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           +PN ++WG+LL ACRVH++ ++A  AA++I ELDP+   ++VLL NIYA+  RWD+  ++
Sbjct: 639 EPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKV 698

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R  + ++G  K PG S IE+NG + EF  GD+SHP+   I   L E+   L+ +GY+PD+
Sbjct: 699 RLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDL 758

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
           + V LDV E++KE  + +HSEKLA+AF LIS+G G+ IR+ KNLR+C DCH  AKLVS  
Sbjct: 759 TNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKS 818

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
           Y RE+IVRD  RFH F+ G CSC DYW
Sbjct: 819 YSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 170/600 (28%), Positives = 286/600 (47%), Gaps = 88/600 (14%)

Query: 26  CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG---DMKYACKVFRKIPRPSVCL 82
           C++M +LKQ+HSQ  K GL  +P     L++  C+E G    ++YA K        +  +
Sbjct: 43  CKTMTELKQLHSQITKNGLNHHPLSLTNLIS-SCTEMGTFESLEYAQKALELFIEDNGIM 101

Query: 83  -----WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
                ++++I+G+S        ++++  ++     PDN+TFPF+L   T+  A+  G ++
Sbjct: 102 GTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQV 161

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H  ++K GF+  +FV+N+LI  Y  CGE+D  R +FD   + +VV+W ++  GY +   +
Sbjct: 162 HGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCY 221

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
            E   LF EM   G+ P SVT+V V+SACAKL+DL +G++    + E ++  N ++ NAL
Sbjct: 222 KEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNAL 281

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            DMY  CG +  A +IF    +K+++ +  I++ Y+ +G                     
Sbjct: 282 VDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLA------------------- 322

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                       RE L +  EM     RPD  T++S ++AC+ L  +  G+W   Y+ +N
Sbjct: 323 ------------REVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRN 370

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            ++    V NA+I+MY KCG  E A RVF  ML K + +W ++I G   NG  + +  +F
Sbjct: 371 GLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIF 430

Query: 438 SQMLRASII-------------------------------PDEVTYVGVLSACTHTGMVD 466
           S M  + ++                                D+VT VGV SAC + G +D
Sbjct: 431 SAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALD 490

Query: 467 EGREYFADMTIQHGIEPNEAHY-----GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
             +       I   I+  + H+       +VD+  R G    A++V   M +K +   W 
Sbjct: 491 LAK------WIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWT 543

Query: 522 ALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAAC---NRWDNFRELRQM 576
           A +GA  +  +   A     ++L+  + PD      LL  +         W  FR ++ +
Sbjct: 544 AAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDI 603


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 280/693 (40%), Positives = 419/693 (60%), Gaps = 42/693 (6%)

Query: 30  HQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK-GDMKYACKVFRKIPRPSVCLWNTMIK 88
            +++Q+H+ ++K  +  +P V ++L+      K  D+ YA  +F +I R S+  WNT+IK
Sbjct: 27  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 86

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
            Y       +G++++ +++  +  PDN+T P ++KG  R   V+ GK++H   LK GF S
Sbjct: 87  CYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS 145

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
            VFVQ +L++ Y  CGE+D AR +FD     DVV WN++  GY R  + D   +LF EM 
Sbjct: 146 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP 205

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
            +     +V                                       L D  + CG++ 
Sbjct: 206 ERDAFSWTV---------------------------------------LVDGLSKCGKVE 226

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A ++F  +  ++++SW A++ GY+  G  D A + F QMP  D V W  MI GY    +
Sbjct: 227 SARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQ 286

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           F +A+ +F  M     RP   T+VS+L+A + L  L  G W+ +Y++KN  + D  +G +
Sbjct: 287 FMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTS 346

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LI+MY KCG +E A  VFR + +K    WTA+IVGL I+G  + +L +F +M +  + P+
Sbjct: 347 LIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPN 406

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
            + ++GVL+AC H G+VD+GR+YF  M  ++ IEP   HYGC+VD+L RAGHL EA   I
Sbjct: 407 AIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTI 466

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
           +NMP+ PN ++W +LLG  R H   ++ E AA++++E+ P+    Y+LL N+YAA   W+
Sbjct: 467 ENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWE 526

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
               +R+M+  RG +K PGCS +E  G +HEF+ GD SHPQTKEIY K+ EM   LK VG
Sbjct: 527 KVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVG 586

Query: 629 YMPDISEVFLDV-GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           ++PD ++V L + GE++KE  +  HSE+LA+AFGLI+  PG+ IRI+KNLR+C DCH + 
Sbjct: 587 HVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVT 646

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KL+S +Y RE+IVRD  RFHHFK+GSCSC DYW
Sbjct: 647 KLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/698 (42%), Positives = 422/698 (60%), Gaps = 45/698 (6%)

Query: 18  PLISPIETCE---SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRK 74
           PL+  I+ C    S  + KQ+H+  +KLG  ++  V+N L+  C S   +M  AC+VF +
Sbjct: 217 PLL--IQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN-CFSVCSNMTDACRVFNE 273

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
                   WN+++ GY  I + +    IY  M      P+                    
Sbjct: 274 SSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM------PER------------------- 308

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
                         S+   N++I  + + G V  A  +FD   + D+VTW+A+ + +++ 
Sbjct: 309 --------------SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQN 354

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
           + ++E  + F  M + GV+   V  V  LSACA L  +++GK  H    +      + L+
Sbjct: 355 EMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQ 414

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           NAL  MY+ CG++  A ++F      D+ISW ++++GY+    VD A+  FD MPE+D V
Sbjct: 415 NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVV 474

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W++MI GY + + F E L LF+EMQ S  +PDE T+VS+++ACA L ALE G+WV  YI
Sbjct: 475 SWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYI 534

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            +N +  ++ +G  LIDMY KCG VE A  VF  M+ K   TW A+I+GLA+NG  + SL
Sbjct: 535 KRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSL 594

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           DMFS M +  + P+E+T++GVL AC H G+VDEG+ +F  M   H I+PN  HYGCMVDL
Sbjct: 595 DMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDL 654

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L EA E++  MPM P+   WGALLGAC+ H D+EM     ++++EL PD++  +
Sbjct: 655 LGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFH 714

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL NIYA+  +WD+  E+R M+    + K PGCSMIE NGV+HEF+AGDK+HP    I 
Sbjct: 715 VLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIE 774

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L EM   LK  GY PDI+EV LDV EE+KE  +++HSEKLA+AFGLI+  P   IRI+
Sbjct: 775 DMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIM 834

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHG 712
           KNLR+C DCH  AKL+S  + R+++VRD+ RFHHF+ G
Sbjct: 835 KNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 163/369 (44%), Gaps = 64/369 (17%)

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T  L++ AC+  +     K+ H +V +     ++ + N L + ++ C  M  A  +F   
Sbjct: 215 TYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNES 274

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPER-------------------------- 311
              D +SW +I+ GYI  G V+ A+  + QMPER                          
Sbjct: 275 SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFD 334

Query: 312 -----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
                D V W+A+I  + +   + EA+  F  M    +  DE   VS L+ACANL  + +
Sbjct: 335 EMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNM 394

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD---------------------------- 398
           G+ + +   K   ++ I + NALI MY KCGD                            
Sbjct: 395 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 454

Query: 399 ---VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
              V+ A+ +F  M  KD  +W++MI G A N   D++L +F +M  +   PDE T V V
Sbjct: 455 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 514

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           +SAC     +++G+   A +  ++G+  N      ++D+  + G +  ALEV   M  K 
Sbjct: 515 ISACARLAALEQGKWVHAYIK-RNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKG 573

Query: 516 NSIVWGALL 524
            S  W AL+
Sbjct: 574 IS-TWNALI 581



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 143/329 (43%), Gaps = 39/329 (11%)

Query: 12  TLTQETPLISPIETCESM---HQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
            +  E   +S +  C ++   +  K IHS ++K+G  +   +QN L+ +  S+ GD+  A
Sbjct: 372 VMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALI-YMYSKCGDIMVA 430

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV----------------- 111
            K+F +     +  WN+MI GY + +   N   I+  M + DV                 
Sbjct: 431 RKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFD 490

Query: 112 --------------RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALI 157
                         +PD  T   ++    R  A+E GK +H ++ + G   +V +   LI
Sbjct: 491 ETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLI 550

Query: 158 STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
             Y  CG V+ A  +F    +  + TWNA+  G       + +  +F  M++  V P  +
Sbjct: 551 DMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEI 610

Query: 218 TIVLVLSACAKLKDLDVGKRAHRY--VKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           T + VL AC  +  +D G+  H Y  + + KI PN+     + D+    G++  A E+  
Sbjct: 611 TFMGVLGACRHMGLVDEGQH-HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 669

Query: 276 NIK-NKDVISWTAIVTGYINRGQVDMARQ 303
            +    DV +W A++      G  +M R+
Sbjct: 670 RMPMTPDVATWGALLGACKKHGDSEMGRR 698



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 8/129 (6%)

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW----VKTYIDKN 377
            Y++ N    A TL++ M ++ +  D +T   ++ AC+    +   EW    V  ++ K 
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACS----IRRSEWEAKQVHNHVLKL 242

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
              +D++V N LI+ +  C ++  A RVF E    D  +W +++ G    G+ +++  ++
Sbjct: 243 GFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIY 302

Query: 438 SQMLRASII 446
            QM   SII
Sbjct: 303 HQMPERSII 311


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/698 (41%), Positives = 417/698 (59%), Gaps = 10/698 (1%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK-------VFRKIPRPSVCLW 83
            LKQIH+Q +     T P   N L++        +  +         VF +IP P     
Sbjct: 31  HLKQIHAQILHSN--TTPENTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFS 88

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRP-DNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           N +++  SR    +  + +Y ++   +    D ++FP LLK  ++  A   G E+H    
Sbjct: 89  NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K GF    F+Q  LI+ Y  C  +  AR +FD     D V WN +  GY +   +D+  +
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           LF +M    + P SV +  VLSAC    +L  G+  H +VK+     +  L+ AL +MYA
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYA 268

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG M  A +I+  + +K +I  TA+++GY   G V  AR  FDQM ERD V W+AMI G
Sbjct: 269 NCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISG 328

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           Y   ++ +EAL LF EM      PD+ T++S+++AC+++GAL    W+ TY+D++     
Sbjct: 329 YAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRA 388

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           + V NALIDMY KCG++ KA+ VF  M RK+  +W++MI   A++G+ D ++ +F +M  
Sbjct: 389 LSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKE 448

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
            +I P+ VT++GVL AC H G+V+EG + F+ M  +HGI P   HYGCMVDL  RA  L 
Sbjct: 449 VNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLR 508

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           +A+E+I+ MP  PN I+WG+L+ AC+VH +AE+ E AAK++LEL+PD++   V+L NIYA
Sbjct: 509 KAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYA 568

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
              RW++   +R+ +  +GI K    S IE+N  VH F+  D+ H Q+ EIY KLDE+ S
Sbjct: 569 KEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVS 628

Query: 623 DLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
            LK VGY P  S + +D+ EEDK+  V  HSEKLA+ +GLIS      IRIVKNLR+C D
Sbjct: 629 KLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICED 688

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           CH   KLVS VY  E++VRD+TRFHH   G CSC+DYW
Sbjct: 689 CHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/702 (40%), Positives = 426/702 (60%), Gaps = 40/702 (5%)

Query: 28  SMHQLKQIHSQTIKLGLLT------NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP--S 79
           ++  + Q+H+  +K G +T      +  ++   +    +    + YA ++FR  P P  S
Sbjct: 75  ALRDVPQLHATLLKSGAMTTSPDSFHSLLEAAALPAPATSSAHLSYAIRLFRLGPHPPRS 134

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
              +N +I+ + R    ++ + ++++ML  + V PD +T    +K  +R   +  G+ + 
Sbjct: 135 ARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQ 194

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
            +  K GF    FV N+LI  Y  CG+V  A  +F       V+ WNAM +GY +   + 
Sbjct: 195 AYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWK 254

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E  ++F  M         VT++ V +AC +L D ++G+    Y +E  ++ +  L  AL 
Sbjct: 255 EVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALV 314

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA CGE+                               D AR+ FD+M  RD V W+A
Sbjct: 315 DMYAKCGEL-------------------------------DKARRLFDRMHSRDVVAWSA 343

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           MI GY + +R REAL +F EMQ + + P++ T+VS+L+ACA LGALE G+WV +YI +  
Sbjct: 344 MISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKD 403

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +   + +G AL+D Y KCG ++ A + F  M  ++ +TWTA+I G+A NG   ++L++FS
Sbjct: 404 LPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFS 463

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
            ML A+I P +VT++GVL AC+H  +V+EGR +F  MT  +GI P   HYGCMVDLLGRA
Sbjct: 464 SMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRA 523

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G ++EA + I+NMP++PN++VW ALL AC VH++ E+ E A KQI+ LDP +   Y+LL 
Sbjct: 524 GLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLS 583

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           N YA+  +W N   +R+ + ++G++K PGCS+IE+ G + EF A D  HPQ  EIY K+ 
Sbjct: 584 NTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVH 643

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
           EM  ++K VGY+P+ ++  LDV E +K+ +V  HSEKLA+AFGL+ S PG TIR+ KNLR
Sbjct: 644 EMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLR 703

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C+DCH   KL+S VY+RE+IVRD+ RFHHFK G CSC DYW
Sbjct: 704 VCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 208/459 (45%), Gaps = 47/459 (10%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTF 57
           M  ++++SP       T     +++C  M  L   + + +   K G + +  V N L+  
Sbjct: 161 MLDDTAVSPDQHTVANT-----VKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHM 215

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
             S  GD+  A  +F  +    V  WN MI GY +    K  V ++  ML+     D  T
Sbjct: 216 YAS-CGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVT 274

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
              +     R      G+ +  +  + G   S  +  AL+  Y  CGE+D AR +FD  +
Sbjct: 275 LLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMH 334

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
             DVV W+AM SGY +  +  E   +F EM+   V P  VT+V VLSACA L  L+ GK 
Sbjct: 335 SRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKW 394

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H Y++   +   +IL  AL D YA CG +  A++ F ++  ++  +WTA++ G  + G 
Sbjct: 395 VHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNG- 453

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
                                         R REAL LF  M  +NI P + T + +L A
Sbjct: 454 ------------------------------RSREALELFSSMLEANIEPTDVTFIGVLLA 483

Query: 358 CANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKF 415
           C++   +E G    T + ++  +   I     ++D+  + G +++A +  R M +  +  
Sbjct: 484 CSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAV 543

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
            W A++    ++    K++++  + L+  I+P +  + G
Sbjct: 544 VWRALLSACTVH----KNVEIGEEALK-QIVPLDPCHSG 577


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/687 (39%), Positives = 426/687 (62%), Gaps = 1/687 (0%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           Q+H   +K+GL+ +  V N L+ F  +  G +    KVF ++   +V  W ++I GYS +
Sbjct: 143 QVHGVVVKMGLVKDLFVANSLIHFYAA-CGKVDLGRKVFDEMLERNVVSWTSLINGYSVV 201

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           +  K  V ++ +M++  V P+  T    +    +   +E GK++   + + G  S+  V 
Sbjct: 202 NMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVV 261

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           NAL+  Y  CG++   R IFD     ++V +N + S Y +     E   +  EM +KG  
Sbjct: 262 NALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQR 321

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  VT++  ++ACA+L DL VGK +H YV    +     + NA+ DMY  CG+   A ++
Sbjct: 322 PDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKV 381

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F ++ NK V++W +++ G +  G++++A + F +MPE + V W  MI   ++ + F EA+
Sbjct: 382 FDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAI 441

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            L REMQ   I+ D  T+V I +AC  LGAL+L +W+ TYI+KN +  D+ +G AL+DM+
Sbjct: 442 DLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMF 501

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            +CGD   A RVF  M ++D   WTA I   A+ G+   ++++F +ML+  +  D+  +V
Sbjct: 502 SRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFV 561

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            +L+A +H G VD+GR+ F  M   HG+ P   HYGCMVDLLGRAG L EA +++K+MP+
Sbjct: 562 ALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPI 621

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           KPN ++WG+ L ACR H++ E A  A ++I +L P+   ++VLL NIYA+  +W++   +
Sbjct: 622 KPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARV 681

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R  + ++G +K  G S IE++G++ EF +GD+SH +  +I L L E+   +  VGY+PD 
Sbjct: 682 RLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDT 741

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
           + V +DV E++KE  + +HSEKLAMA+GLI++G G+ IR+VKNLRMC DCH  AKLVS +
Sbjct: 742 TNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKL 801

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
           Y RE+ VRD  R+H FK G CSC+D+W
Sbjct: 802 YGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 184/613 (30%), Positives = 292/613 (47%), Gaps = 86/613 (14%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC--S 60
           S+S +  P+T   + P  S ++TC+++ +LKQ+H   +K G+       NKL+  C    
Sbjct: 11  SSSPLLLPTT--TQKPKNSSLQTCKTLIELKQLHCNMLKKGVFN----INKLIAACVQMG 64

Query: 61  EKGDMKYACKVFRKIPRPSVCLW--NTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYT 117
               + YA   F++       L+  NT+I+GY+     K  + IYL M+    + PDN+T
Sbjct: 65  THESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFT 124

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           FPFLL   ++ +A   G ++H  V+K G    +FV N+LI  Y  CG+VD+ R +FD   
Sbjct: 125 FPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEML 184

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           + +VV+W ++ +GY  V    E   LF EM   GV P  VT+V  +SACAKLKDL++GK+
Sbjct: 185 ERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKK 244

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
               + E  +  N ++ NAL DMY  CG+M    EIF    +K+++ +  I++ Y+  G 
Sbjct: 245 VCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGL 304

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
                                            E L +  EM     RPD+ T++S + A
Sbjct: 305 AG-------------------------------EVLVVLDEMLQKGQRPDKVTMLSTIAA 333

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
           CA LG L +G+    Y+ +N ++    + NA+IDMY KCG  E A +VF  M  K   TW
Sbjct: 334 CAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTW 393

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIP------------------------------ 447
            ++I GL  +G  + +L +F +M  ++++                               
Sbjct: 394 NSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIK 453

Query: 448 -DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY-----GCMVDLLGRAGHL 501
            D VT VG+ SAC + G +D  +  +        IE N+ H        +VD+  R G  
Sbjct: 454 GDRVTMVGIASACGYLGALDLAKWIYTY------IEKNDIHIDMQLGTALVDMFSRCGDP 507

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD-PDNEAVYVLLCNI 560
             A+ V +NM  +  S  W A +    V  +A+ A     ++L+ D   ++ V+V L   
Sbjct: 508 LNAMRVFENMEKRDVS-AWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTA 566

Query: 561 YAACNRWDNFREL 573
           ++     D  R+L
Sbjct: 567 FSHGGYVDQGRQL 579


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/631 (43%), Positives = 415/631 (65%), Gaps = 8/631 (1%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACK 70
            L Q  PL+S +E C SM ++K+IH+Q I  GL+++    ++LV FC  SE  ++ Y  K
Sbjct: 50  VLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDK 109

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLK---GFT 126
           +       +V  WN  I+GY   ++  N VL+Y +ML K    PDNYT+P L K   GF+
Sbjct: 110 ILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFS 169

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
                    E+  HV++ GFDS +FV NA+I     CGE+  AR +FD S   D+V+WN+
Sbjct: 170 LSWT---ANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNS 226

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + +GY R    DE   L+ +M    V+P  VT++ V+SA A+L++L +G++ H+ ++E  
Sbjct: 227 IINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMG 286

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
           +   + L NAL DMY  C  +  A  +F N+  K V+SWT +V GY   G ++ A + F+
Sbjct: 287 LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFN 346

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
           +MPE+D VLW A+I G+++  R +EAL LF EMQ S++ PD+ T+V+ L+AC+ LGAL++
Sbjct: 347 EMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDV 406

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G W+  Y+DK+ +  ++ +G AL+DMY KCG+++KA +VF EM  ++  TWTA+I GLA+
Sbjct: 407 GIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLAL 466

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G    ++  FS+M+   ++PDE+T++GVLSAC H G+VD+GR+YF  MT ++GI P   
Sbjct: 467 HGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLK 526

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY C+VDLLGRAG L EA E+I++MP +P+++VWGAL    R+H +  M E AA ++LEL
Sbjct: 527 HYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLEL 586

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           DP +  +YVLL N+Y   N W+  R++R+M+ +RG++KTPGCS IEMNG+V++F+  DKS
Sbjct: 587 DPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKS 646

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVF 637
           HPQ+++IY  L  +T  ++ +   P + + F
Sbjct: 647 HPQSEKIYECLTRLTRQIEVIEVDPSLFKEF 677


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/689 (41%), Positives = 411/689 (59%), Gaps = 64/689 (9%)

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + YA  VF  I  P++ +WNTM +G++      + + +Y+ M+   + P++YTFPFLLK 
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 125 FTRDIAVEFGKELHCHVLKFGFDS---------SVFVQN--------------------- 154
             +  A + G ++H HVLK G++          S++VQN                     
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 155 -ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
            AL++ Y   G ++ AR +FD     DVV+WNAM SGY     + E  +LF EM +  V 
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P   T+V V+SA A+   +++G++ H ++ +     NL + NAL D Y+ CGEM  A  +
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGL 252

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  KDVIS                               W  +I GY  +N ++EAL
Sbjct: 253 FLGLSYKDVIS-------------------------------WNILIGGYTHLNLYKEAL 281

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK--NKVKNDIFVGNALID 391
            LF+EM  S   P++ T++SIL ACA+LGA+++G W+  YIDK    V N   +  +LID
Sbjct: 282 LLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLID 341

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCGD+E A +VF  ML K    W AMI G A++G  + + D+FS+M +  I PD++T
Sbjct: 342 MYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDIT 401

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +VG+LSAC+H GM+D GR  F  MT  + I P   HYGCM+DLLG +G   EA E+I  M
Sbjct: 402 FVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTM 461

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
            M+P+ ++W +LL AC++H + E+ E  A+ + +++P+N   YVLL NIYA   RW+   
Sbjct: 462 TMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVA 521

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            +R ++ D+G+KK PGCS IE++ VVHEF+ GDK HP+ +EIY  L+EM   L+  G++P
Sbjct: 522 RIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVP 581

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           D SEV  ++ EE KE A+  HSEKLA+AFGLIS+ P   + IVKNLR+C +CH   KL+S
Sbjct: 582 DTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLIS 641

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +Y RE+I RD+TRFHHF+ G CSC DYW
Sbjct: 642 KIYKREIIARDRTRFHHFRDGVCSCNDYW 670


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 288/690 (41%), Positives = 416/690 (60%), Gaps = 34/690 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K+IH   +K GL  +  V N L+     E   ++YA  VF K+    V  W+TMI+  SR
Sbjct: 114 KEIHGFVLKKGLDRDVFVGNALM-LMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSR 172

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  + +  +M    VRP       ++  F     +  GK +H +V++   +  + V
Sbjct: 173 NKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGV 232

Query: 153 --QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
               AL+  Y  CG + +AR +F+   +  VV+W AM +G  R  + +E  KLF  M+ +
Sbjct: 233 PTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEE 292

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
            + P  +T++ ++  C     L +GK+ H Y+       +L L  AL DMY  C +    
Sbjct: 293 NIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSD---- 348

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
                 I+N                     AR  FD    RD ++WTAM+  Y + N   
Sbjct: 349 ------IRN---------------------ARALFDSTQNRDVMIWTAMLSAYAQANCID 381

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           +A  LF +M+TS +RP + TIVS+L+ CA  GAL+LG+WV +YIDK +V+ D  +  AL+
Sbjct: 382 QAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALV 441

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMY KCGD+  A R+F E + +D   W A+I G A++G+G+++LD+F++M R  + P+++
Sbjct: 442 DMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDI 501

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T++G+L AC+H G+V EG++ F  M    G+ P   HYGCMVDLLGRAG L+EA E+IK+
Sbjct: 502 TFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKS 561

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MP+KPN+IVWGAL+ ACR+H++ ++ E+AA Q+LE++P+N    VL+ NIYAA NRW + 
Sbjct: 562 MPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDA 621

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
             +R+ +   G+KK PG S+IE+NG VHEF+ GD+SHPQ + I   L EM   L   GY+
Sbjct: 622 AGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYV 681

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           PD S V L++ EE+KE A+  HSEKLAMAFGLIS+ P   IRIVKNLR+C DCH   KL+
Sbjct: 682 PDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLL 741

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S +Y R +IVRD+ RFHHF+ G CSC DYW
Sbjct: 742 SKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/631 (42%), Positives = 414/631 (65%), Gaps = 8/631 (1%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACK 70
            L Q  PL+S +E C SM ++K+IH+Q I  GL+++    ++LV FC  SE  ++ Y  K
Sbjct: 50  VLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDK 109

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLK---GFT 126
           +       +   WN  I+GY   ++  N VL+Y +ML K    PDNYT+P L K   GF+
Sbjct: 110 ILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFS 169

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
                    E+  HV++ GFDS +FV NA+I     CGE+  AR +FD S   D+V+WN+
Sbjct: 170 LSWT---ANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNS 226

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + +GY R    DE   L+ +M    V+P  VT++ V+SA A+L++L +G++ H+ ++E  
Sbjct: 227 IINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMG 286

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
           +   + L NAL DMY  C  +  A  +F N+  K V+SWT +V GY   G ++ A + F+
Sbjct: 287 LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFN 346

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
           +MPE+D VLW A+I G+++  R +EAL LF EMQ S++ PD+ T+V+ L+AC+ LGAL++
Sbjct: 347 EMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDV 406

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G W+  Y+DK+ +  ++ +G AL+DMY KCG+++KA +VF EM  ++  TWTA+I GLA+
Sbjct: 407 GIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLAL 466

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G    ++  FS+M+   ++PDE+T++GVLSAC H G+VD+GR+YF  MT ++GI P   
Sbjct: 467 HGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLK 526

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY C+VDLLGRAG L EA E+I++MP +P+++VWGAL    R+H +  M E AA ++LEL
Sbjct: 527 HYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLEL 586

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           DP +  +YVLL N+Y   N W+  R++R+M+ +RG++KTPGCS IEMNG+V++F+  DKS
Sbjct: 587 DPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKS 646

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVF 637
           HPQ+++IY  L  +T  ++ +   P + + F
Sbjct: 647 HPQSEKIYECLTRLTRQIEVIEVDPSLFKEF 677


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/719 (40%), Positives = 434/719 (60%), Gaps = 8/719 (1%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           P   ++    ++  +  C+S++ +KQ+H+  ++  ++ +            S   ++ YA
Sbjct: 8   PSFAVSAANTILEKLSFCKSLNHIKQLHAHILRT-VINHKLNSFLFNLSFSSSSINLSYA 66

Query: 69  CKVFRKI-PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
             +F  I P P   ++N++++  SR    +  +L Y  +     R D  +FP +LK  ++
Sbjct: 67  LNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSK 126

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             A+  G ELH    K    S  FV+  L+  Y  CG ++ AR +FD   + DVVTWN M
Sbjct: 127 VSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTM 186

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
              Y R    DE  KLF EM+   V+P  + +  ++SAC +  ++   +  + ++ E  +
Sbjct: 187 IERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDV 246

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             +  L  AL  MYA  G M  A+E F  +  +++   TA+V+GY   G++D AR  FDQ
Sbjct: 247 RMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQ 306

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
              +D V WT MI  Y   +  +EAL +F EM  S I+PD  T++S+++AC NLG L+  
Sbjct: 307 TEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKA 366

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           +WV  Y   N +++ + + NALI+MY KCG ++ A+ VF +M  ++  +W++MI   A++
Sbjct: 367 KWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMH 426

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G    SL +F+QM + ++ P+EVT+VGVL  C+H+G+V+EG++ FA MT ++ I P   H
Sbjct: 427 GEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEH 486

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           YGCMVDL GRA  L EALEVI++MPM PN ++WG+L+ ACRVH + E+ E+AAK+IL+L+
Sbjct: 487 YGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLE 546

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           PD++   VL+ NIYA   RWD  R +R ++  + + K  G S I++NG  HEF+ GDK H
Sbjct: 547 PDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRH 606

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS--- 664
            Q+ EIY KL E+ S LK  GY+PD   V +DV EE+K+  V  HSEKLA+ FGL++   
Sbjct: 607 KQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEK 666

Query: 665 ---SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
               G    IRIVKNLR+C DCH   KLVS VY+ E+IVRD+TRFH +K G CSC+DYW
Sbjct: 667 EEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/721 (39%), Positives = 423/721 (58%), Gaps = 67/721 (9%)

Query: 36  HSQTIKLGLLTNPTVQNKLVTFCCSEK--GDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           H+Q +K GL       +KL+  C        + YA  VF     P++ +WNTM++G +  
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG-------- 145
               + + +Y+ M+     P+ YTFPFLLK   +    E G+++H  V+K G        
Sbjct: 62  SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAH 121

Query: 146 -------------------FDSS----VFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
                              FD S    V    ALI+ Y   G+V  AR +FD   + DVV
Sbjct: 122 TSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVV 181

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNAM +GY     ++E  +LF EM R  V P   T+V VLSACA+   +++G+  H  V
Sbjct: 182 SWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLV 241

Query: 243 KECK-IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
            +      +L + NA   +Y+ CG+                               V++A
Sbjct: 242 DDHHGFGSSLKIVNAFIGLYSKCGD-------------------------------VEIA 270

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
              F+ +  +D V W  +I GY  +N ++EAL LF+EM  S   P++ T++S+L ACA+L
Sbjct: 271 SGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHL 330

Query: 362 GALELGEWVKTYIDK--NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
           GA+++G W+  YIDK    V N   +  +LIDMY KCGD+E A +VF  M+ K   +W A
Sbjct: 331 GAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNA 390

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           MI G A++G  + + D+FS+M +  I PD++T VG+LSAC+H+G++D GR  F  +T  +
Sbjct: 391 MIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDY 450

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
            I P   HYGCM+DLLG AG   EA E+I  MPM+P+ ++W +LL AC++H + E+AE  
Sbjct: 451 NITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESF 510

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
           A++++E++P+N   YVLL NIYA   RW++   +R+++  +G+KK PGCS IE++ VVHE
Sbjct: 511 AQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHE 570

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA 659
           F+ GDK HPQ++EIY  L+EM   L+  G++PD SEV  ++ EE KE A+  HSEKLA+A
Sbjct: 571 FIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIA 630

Query: 660 FGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
           FGLIS+ PG  + +VKNLR+C +CH   KL+S +Y RE++ RD+TRFHHF+ G CSC DY
Sbjct: 631 FGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDY 690

Query: 720 W 720
           W
Sbjct: 691 W 691



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 216/459 (47%), Gaps = 69/459 (15%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC------------------- 59
           L+      ++  + +QIH+Q +KLG   +      L++                      
Sbjct: 89  LLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRD 148

Query: 60  -----------SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK 108
                      + +GD++ A KVF  I    V  WN MI GY     ++  + ++ +M++
Sbjct: 149 VVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMR 208

Query: 109 SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV-LKFGFDSSVFVQNALISTYCLCGEVD 167
           ++VRPD  T   +L    +  ++E G+E+H  V    GF SS+ + NA I  Y  CG+V+
Sbjct: 209 TNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVE 268

Query: 168 MARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
           +A G+F+     DVV+WN +  GY  +  + E   LF EM R G  P  VT++ VL ACA
Sbjct: 269 IASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACA 328

Query: 228 KLKDLDVGKRAHRYV-KECKIVPN-LILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
            L  +D+G+  H Y+ K  K V N   L  +L DMYA CG++  A ++F ++ +K + SW
Sbjct: 329 HLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSW 388

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            A++ G+   G+ + A   FD                            LF  M+ + I 
Sbjct: 389 NAMIFGFAMHGRANAA---FD----------------------------LFSRMRKNGIE 417

Query: 346 PDEFTIVSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           PD+ T+V +L+AC++ G L+LG  + K+      +   +     +ID+    G  ++A+ 
Sbjct: 418 PDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEE 477

Query: 405 VFREM-LRKDKFTWTAMIVGLAINGHGDKSL-DMFSQML 441
           +   M +  D   W +++   A   HG+  L + F+Q L
Sbjct: 478 IIHMMPMEPDGVIWCSLLK--ACKMHGNLELAESFAQKL 514


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 277/681 (40%), Positives = 422/681 (61%), Gaps = 34/681 (4%)

Query: 43  GLLTNPTVQNKLVTFCCSEKG-DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101
           G + +    NKL+    S     + YA  VF       V  WN+M++ +   +  +  + 
Sbjct: 5   GFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQ 64

Query: 102 IYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY 160
            Y +ML +S   PD +TFP LLKG    +  + GK LH  V+K+   S ++++  L++ Y
Sbjct: 65  SYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMY 124

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
             CG++  AR +F+     + V W +M SGY +    +E   L+ +ME  G  P  VT+ 
Sbjct: 125 AACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMA 184

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            ++SACA+LKDL VG + H +++E  +    +L +AL +MYA CG++             
Sbjct: 185 TLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDL------------- 231

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
                               ARQ FDQ+ ++D   W+A+I GY++ NR  EAL LFRE+ 
Sbjct: 232 ------------------KTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVA 273

Query: 341 T-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
             SN+RP+E TI+++++ACA LG LE G WV  YI + +  + + + N+LIDM+ KCGD+
Sbjct: 274 GGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDI 333

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           + A+R+F  M  KD  +W +M+ GLA++G G ++L  F  M    + PDE+T++GVL+AC
Sbjct: 334 DAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTAC 393

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H G+V EG++ F ++   +G+     HYGCMVDLL RAG L EA E I+ MP++P+  +
Sbjct: 394 SHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAI 453

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           WG++LGACRV+ + E+ E AA+ +LEL+P N+ VY+LL NIYA    W+  +++R+++ +
Sbjct: 454 WGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNE 513

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
           +GI+KTPGCS + ++ + H F+AGD SHP+  EI + L ++   LK VGY+ D SEV L+
Sbjct: 514 KGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLN 573

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           + +  KE +V QHSEKLA+ +GL+ S  G  I I+KNLR+C DCH + KLVS +Y R++ 
Sbjct: 574 IDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQIT 633

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           +RD+ RFHHFK GSCSC+DYW
Sbjct: 634 LRDRNRFHHFKDGSCSCRDYW 654


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 282/710 (39%), Positives = 420/710 (59%), Gaps = 66/710 (9%)

Query: 40  IKLGLLTNPTVQNKLVTFCCSEK--GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHK 97
           IK+GL       +KL+ FC        + YA  VF+ I  P+   WNTMI+G++      
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 98  NGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALI 157
           + + +Y+ M+   + P++YTFPFL K   +  A + GK++H  +LK+G    + V  +LI
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120

Query: 158 STYCLCGEVDMARGIFDVS-YKD------------------------------DVVTWNA 186
           S Y   G V+ A  +FD S ++D                              DVV+WNA
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNA 180

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M SGY  + ++ E  +LF EM +  V P   T+  VLS C    ++++G++ H ++    
Sbjct: 181 MISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHG 240

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              NL L NAL D+Y+ CGEM                               + A   F+
Sbjct: 241 FGSNLKLVNALIDLYSKCGEM-------------------------------ERAHGLFE 269

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
            +  +D + W  +I GY  +N  +EAL +F+EM      P++ T++SIL ACA+LGA+++
Sbjct: 270 GLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDI 329

Query: 367 GEWVKTYIDKN--KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           G W+  YIDK    +  +  +  +LIDMY KCG++E A +VF  +L K   +  AMI G 
Sbjct: 330 GRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGF 389

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A++G  D + D+ S+M +  I PD++T+VG+LSAC+H G+ D GR+ F  MT+ + IEP 
Sbjct: 390 AMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPK 449

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGCM+DLLGR+G   EA E+I +M M+P+ ++WG+LL AC++H++ E+ E+ A++++
Sbjct: 450 LEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLM 509

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           +++P N   YVLL NIYA   RWD+   +R ++ D+G+KK PGCS IE++ +VHEF+ GD
Sbjct: 510 KIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGD 569

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           K HPQ KEIY  L+E+ S L   G++ D SEV  ++ EE KE A+  HSEKLA+AFGLIS
Sbjct: 570 KFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLIS 629

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           + PG  +RIVKNLR+C +CH   KL+S +Y RE+I RD++RFHHFK G C
Sbjct: 630 TKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 201/423 (47%), Gaps = 65/423 (15%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCC------------------------------SEK 62
           KQIH+Q +K GL  +  V   L++                                 + +
Sbjct: 98  KQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASR 157

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G+M  A K+F +IP   V  WN MI GY+ I  +K  + ++ +M+K DV+PD  T   +L
Sbjct: 158 GNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVL 217

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
              T    VE G+++H  +   GF S++ + NALI  Y  CGE++ A G+F+     DV+
Sbjct: 218 STCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVI 277

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WN +  GY  +    E   +F EM + G  P  VT++ +L ACA L  +D+G+  H Y+
Sbjct: 278 SWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 337

Query: 243 -KECK-IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
            K+ K I+ N  L+ +L DMYA CG +  A ++F  I NK + S  A++ G+   G+ D 
Sbjct: 338 DKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADA 397

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           A   FD                            L   M+   I PD+ T V +L+AC++
Sbjct: 398 A---FD----------------------------LLSRMKKDGIEPDDITFVGLLSACSH 426

Query: 361 LGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWT 418
            G  +LG  + K+     +++  +     +ID+  + G  ++A+ +   M +  D   W 
Sbjct: 427 AGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWG 486

Query: 419 AMI 421
           +++
Sbjct: 487 SLL 489


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/728 (39%), Positives = 442/728 (60%), Gaps = 20/728 (2%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC-----CS 60
           ++ PP   T    ++  +  C+S++ +KQ+H+  ++        + +KL +F       S
Sbjct: 2   TLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILR------TVINHKLNSFLFNLSVSS 55

Query: 61  EKGDMKYACKVFRKIPRP-SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
              ++ YA  VF  IP P    ++N  ++  SR    +  +L Y  +     R D ++F 
Sbjct: 56  SSINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFL 115

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +LK  ++  A+  G ELH    K       FV+   +  Y  CG ++ AR +FD     
Sbjct: 116 PILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHR 175

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           DVVTWN M   Y R    DE  KLF EM+   V+P  + +  ++SAC +  ++   +  +
Sbjct: 176 DVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIY 235

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
            ++ E  +  +  L  AL  MYA  G M  A E F  +  +++   TA+V+GY   G++D
Sbjct: 236 EFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLD 295

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
            A+  FDQ  ++D V WT MI  Y+  +  +EAL +F EM  S I+PD  ++ S+++ACA
Sbjct: 296 DAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACA 355

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
           NLG L+  +WV + I  N +++++ + NALI+MY KCG ++  + VF +M R++  +W++
Sbjct: 356 NLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSS 415

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           MI  L+++G    +L +F++M + ++ P+EVT+VGVL  C+H+G+V+EG++ FA MT ++
Sbjct: 416 MINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEY 475

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
            I P   HYGCMVDL GRA  L EALEVI++MP+  N ++WG+L+ ACR+H + E+ + A
Sbjct: 476 NITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFA 535

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
           AK+ILEL+PD++   VL+ NIYA   RW++ R +R+++ ++ + K  G S I+ NG  HE
Sbjct: 536 AKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHE 595

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA 659
           F+ GDK H Q+ EIY KLDE+ S LK  GY+PD   V +DV EE+K+  V  HSEKLA+ 
Sbjct: 596 FLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALC 655

Query: 660 FGLISS-------GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHG 712
           FGL++          GV IRIVKNLR+C DCH   KLVS VY+RE+IVRD+TRFH +K+G
Sbjct: 656 FGLMNEEKEEEKDSCGV-IRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNG 714

Query: 713 SCSCKDYW 720
            CSC+DYW
Sbjct: 715 LCSCRDYW 722


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 278/693 (40%), Positives = 417/693 (60%), Gaps = 68/693 (9%)

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + YA  VF  I  P++ +WNTM++G++      + + +Y+ M+     P++Y+FPFLLK 
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS-YKD---- 179
             +  A E G+++H  VLK G     +V  +LIS Y   G ++ AR +FD S ++D    
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133

Query: 180 --------------------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
                                     DVV+WNAM +GY    +++E  +LF EM R  V 
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVR 193

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK----IVPNLILENALTDMYAACGEMGF 269
           P   T+V V+SACA+   +++G++ H +V +         +L + NAL D+Y+ CG+   
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD--- 250

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
                                       V+ A   F+ +  +D V W  +I GY   N +
Sbjct: 251 ----------------------------VETAFGLFEGLSCKDVVSWNTLIGGYTHTNLY 282

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN--KVKNDIFVGN 387
           +EAL LF+EM  S   P++ T++S+L ACA+LGA+++G W+  YIDK    V N+  +  
Sbjct: 283 KEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRT 342

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           +LIDMY KCGD+E A +VF  ML +   +W AMI G A++G  + + D+FS+M    + P
Sbjct: 343 SLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEP 402

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D++T+VG+LSAC+H+G++D GR+ F  MT  + + P   HYGCM+DLLG +G   EA E+
Sbjct: 403 DDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEM 462

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           I  MPM+P+ ++W +LL AC+ H + E+AE  A+++++++P+N   YVLL NIYA   RW
Sbjct: 463 IHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRW 522

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           ++   +R ++  +G+KK PGCS IE++ VVHEF+ GDK HP+ +EIY  L+EM   L+  
Sbjct: 523 EDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEA 582

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           G+ PD SEV  ++ EE KE A+  HSEKLA+AFGLIS+ PG  + IVKNLR+C +CH   
Sbjct: 583 GFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAT 642

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KL+S +Y RE++ RD+TRFHHF+ G CSC DYW
Sbjct: 643 KLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 215/462 (46%), Gaps = 72/462 (15%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC------------------- 59
           L+      ++  + +QIH+Q +KLG   +  V   L++                      
Sbjct: 70  LLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRD 129

Query: 60  -----------SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK 108
                      + +GD + A KVF +I    V  WN MI GY     ++  + ++ +M++
Sbjct: 130 VVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMR 189

Query: 109 SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV----LKFGFDSSVFVQNALISTYCLCG 164
           ++VRPD  T   ++    +  ++E G+++H  V       GF SS+ + NALI  Y  CG
Sbjct: 190 TNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
           +V+ A G+F+     DVV+WN +  GY     + E   LF EM R G  P  VT++ VL 
Sbjct: 250 DVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLP 309

Query: 225 ACAKLKDLDVGKRAHRYV-KECKIVPN-LILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           ACA L  +D+G+  H Y+ K+ K V N   L  +L DMYA CG++  A ++F ++  + +
Sbjct: 310 ACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSL 369

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
            SW A++ G+   G+ + A   FD                            LF  M+ +
Sbjct: 370 SSWNAMIFGFAMHGRANAA---FD----------------------------LFSRMRGN 398

Query: 343 NIRPDEFTIVSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
            + PD+ T V +L+AC++ G L+LG  + K+      +   +     +ID+    G  ++
Sbjct: 399 RVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKE 458

Query: 402 AQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSL-DMFSQML 441
           A+ +   M +  D   W +++   A   HG+  L + F+Q L
Sbjct: 459 AEEMIHTMPMEPDGVIWCSLLK--ACKKHGNLELAESFAQKL 498


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/681 (40%), Positives = 420/681 (61%), Gaps = 34/681 (4%)

Query: 43  GLLTNPTVQNKLVTFCCSEKG-DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101
           G + +    NKL+    S     + YA  VF       V  WN+M++ +   +  +  + 
Sbjct: 5   GFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQ 64

Query: 102 IYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY 160
            Y +ML +S   PD +TFP LLKG    +  + GK LH  V+K+   S ++++  L++ Y
Sbjct: 65  SYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMY 124

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
             CG++  AR +F+     + V W +M SGY +    +E   L+ +ME  G  P  VT+ 
Sbjct: 125 AACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMA 184

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            ++SACA+LKDL VG + H +++E  +    +L +AL +MYA CG++             
Sbjct: 185 TLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDL------------- 231

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
                               ARQ FD++ ++D   W+A+I GY++ NR  EAL LFRE+ 
Sbjct: 232 ------------------KTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVA 273

Query: 341 T-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
             SN+RP+E TI+++++ACA LG LE G WV  YI + +  + + + N+LIDM+ KCGD+
Sbjct: 274 GGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDI 333

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           + A+R+F  M  KD  +W +M+ G A++G G ++L  F  M    + PDE+T++GVL+AC
Sbjct: 334 DAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTAC 393

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H G+V EG++ F ++   +G+     HYGCMVDLL RAG L EA E I+ MP++P+  +
Sbjct: 394 SHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAI 453

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           WG++LGACRV+ + E+ E AA+ +L+L+P N+ VY+LL NIYA    W+  +++R+++ +
Sbjct: 454 WGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNE 513

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
           +GI+KTPGCS + ++ + H F+AGD SHP+  EI + L ++   LK  GY+ D SEV L+
Sbjct: 514 KGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLN 573

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           + +  KE +V QHSEKLA+ +GL+ S  G  I I+KNLR+C DCH + KLVS +Y R++ 
Sbjct: 574 IDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQIT 633

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           +RD+ RFHHFK GSCSC+DYW
Sbjct: 634 LRDRNRFHHFKDGSCSCRDYW 654


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 285/689 (41%), Positives = 412/689 (59%), Gaps = 64/689 (9%)

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + YA  VF  I  P+  +WNTMI+G++      + + +Y+ M+   + P++YTFPFLLK 
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 125 FTRDIAVEFGKELHCHVLKFGFD---------SSVFVQN--------------------- 154
             +      G+++H  VLK GFD          S++VQN                     
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 155 -ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
            ALI+ Y   G++  A+ +FD     DVV+WNAM SGY     + E  +LF EM +  V 
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P   T V VLSACA    +++G++ H +V +     NL + NAL D+Y+ CGE       
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGE------- 246

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                                   V+ A   F  +  +D + W  +I GY  +N ++EAL
Sbjct: 247 ------------------------VETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEAL 282

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK--NKVKNDIFVGNALID 391
            LF+EM  S   P++ T++S+L ACA+LGA+++G W+  YIDK    V N   +  +LID
Sbjct: 283 LLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLID 342

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCGD+E A +VF  ML K   +W AMI G A++G  D S D+FS+M +  I PD++T
Sbjct: 343 MYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDIT 402

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +VG+LSAC+H+GM+D GR  F  MT  + + P   HYGCM+DLLG +G   EA E+I  M
Sbjct: 403 FVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTM 462

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
            M+P+ ++W +LL AC++H + E+AE  A+ +++++P+N + Y+LL NIYA+  RW++  
Sbjct: 463 EMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVA 522

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            +R ++  + +KK PGCS IE++ VV EFV GDK HPQ +EIY  L+EM   L+  G++P
Sbjct: 523 RIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVP 582

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           D SEV  ++ EE KE A+  HSEKLA+AFGLIS+ PG  + IVKNLR+C +CH   KL+S
Sbjct: 583 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLS 642

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +Y RE++ RD+TRFHHF+ G CSC DYW
Sbjct: 643 KIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 150/506 (29%), Positives = 231/506 (45%), Gaps = 112/506 (22%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCC------------------------------SEK 62
           +QIH Q +KLG   +  V   L++                                 + +
Sbjct: 84  QQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASR 143

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD++ A K+F +IP   V  WN MI GY+    +K  + ++ +M+K +VRPD  T+  +L
Sbjct: 144 GDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVL 203

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDV 181
                  ++E G+++H  V   GFDS++ + NALI  Y  CGEV+ A G+F  +SYK DV
Sbjct: 204 SACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYK-DV 262

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           ++WN +  GY  +  + E   LF EM R G  P  VT++ VL ACA L  +D+G+  H Y
Sbjct: 263 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVY 322

Query: 242 V-KECKIVPNL-ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
           + K  K V N   L  +L DMYA CG++  A ++F ++ +K + SW A++ G+   G+ D
Sbjct: 323 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRAD 382

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
            +   FD                            LF  M+   I PD+ T V +L+AC+
Sbjct: 383 AS---FD----------------------------LFSRMRKIGIEPDDITFVGLLSACS 411

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT--- 416
           + G L+LG                                   + +FR M +  K T   
Sbjct: 412 HSGMLDLG-----------------------------------RHIFRSMTQDYKMTPKL 436

Query: 417 --WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
             +  MI  L  +G   ++ +M + M    + PD V +  +L AC   G V E  E FA 
Sbjct: 437 EHYGCMIDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACKMHGNV-ELAESFAQ 492

Query: 475 MTIQHGIEP-NEAHYGCMVDLLGRAG 499
             I+  IEP N + Y  + ++   AG
Sbjct: 493 NLIK--IEPENPSSYILLSNIYASAG 516


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 276/710 (38%), Positives = 425/710 (59%), Gaps = 9/710 (1%)

Query: 19  LISPIETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            +S ++ C +   + + ++IH+     G+ T+  V   L+T   S+ G++  AC++F+K+
Sbjct: 182 FLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMY-SKCGEISLACEIFQKM 240

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              +V  W  +I+  ++         +Y  ML++ + P+  TF  LL       A+  G+
Sbjct: 241 KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGR 300

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF-----SG 190
            +H H+ + G ++ V V NALI+ YC C  +  AR  FD   K DV++W+AM      SG
Sbjct: 301 RIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSG 360

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y+  +  DE  +L   M R+GV P  VT + +L AC+    L+ G++ H  + +     +
Sbjct: 361 YQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESD 420

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
             L+ A+ +MYA CG +  A ++F  ++NK+V++W +++T YI  G +  A + F +M  
Sbjct: 421 RSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMST 480

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           R+ V W  MI GY +     +   L   M+    +PD  TI+SIL AC  L ALE G+ V
Sbjct: 481 RNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLV 540

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
                K  +++D  V  +LI MY KCG+V +A+ VF ++  +D   W AM+ G   +G G
Sbjct: 541 HAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIG 600

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
            +++D+F +ML+  + P+E+T+  V+SAC   G+V EGRE F  M     ++P + HYGC
Sbjct: 601 PEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGC 660

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           MVDLLGRAG L EA E I+ MP +P+  VW ALLGAC+ H + ++AE AA  IL L+P N
Sbjct: 661 MVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSN 720

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
            +VYV L NIYA   RWD+  ++R+++ D+G+KK  G S IE++G +H FVA D +HP+ 
Sbjct: 721 ASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEI 780

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
             I+ +L+ +T ++K  GY PD+  V  DV E  KERA+  HSEKLA+A+GL+ + PG  
Sbjct: 781 DSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTP 840

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IRI+KNLR+C DCH   K +S +  RE++ RD  RFH+FK+G+CSC D+W
Sbjct: 841 IRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  229 bits (583), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 157/602 (26%), Positives = 278/602 (46%), Gaps = 69/602 (11%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           IE C  + +    K +H Q  +LGL  +  + N L+ F  S+ GD+    +VFR++    
Sbjct: 85  IEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFY-SKFGDVASVEQVFRRMTLRD 143

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           V  W++MI  Y+  +        +  M  +++ P+  TF  +LK       +E  +E+H 
Sbjct: 144 VVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHT 203

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            V   G ++ V V  ALI+ Y  CGE+ +A  IF    + +VV+W A+     + ++ +E
Sbjct: 204 VVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNE 263

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             +L+ +M + G+ P +VT V +L++C   + L+ G+R H ++ E  +  ++++ NAL  
Sbjct: 264 AFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALIT 323

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY  C  +  A E F  +  +DVISW+A++ GY   G  D  ++  D             
Sbjct: 324 MYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQD--KESLD------------- 368

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK--- 376
                      E   L   M+   + P++ T +SIL AC+  GALE G  +   I K   
Sbjct: 369 -----------EVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGF 417

Query: 377 ---------------------------NKVKN-DIFVGNALIDMYCKCGDVEKAQRVFRE 408
                                      +K++N ++    +L+ MY KCGD+  A++VF E
Sbjct: 418 ESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSE 477

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M  ++  +W  MI G A +G   K  ++ S M      PD VT + +L AC     ++ G
Sbjct: 478 MSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERG 537

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           +   A+  ++ G+E +      ++ +  + G + EA  V   +  + +++ W A+L    
Sbjct: 538 KLVHAE-AVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNR-DTVAWNAMLAGYG 595

Query: 529 VHR-DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM--ILDRGIKKT 585
            H    E  ++  + + E  P NE  +     + +AC R    +E R++  I+    +  
Sbjct: 596 QHGIGPEAVDLFKRMLKERVPPNEITFTA---VISACGRAGLVQEGREIFRIMQEDFRMK 652

Query: 586 PG 587
           PG
Sbjct: 653 PG 654



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 165/334 (49%), Gaps = 33/334 (9%)

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +  +  E  +L G ++++G+L  S T   ++  CAKL+  + GK  H+ + E  +  ++ 
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           L N+L + Y+           FG++ + +                     Q F +M  RD
Sbjct: 115 LGNSLINFYSK----------FGDVASVE---------------------QVFRRMTLRD 143

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W++MI  Y   N   +A   F  M+ +NI P+  T +SIL AC N   LE    + T
Sbjct: 144 VVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHT 203

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            +  + ++ D+ V  ALI MY KCG++  A  +F++M  ++  +WTA+I   A +   ++
Sbjct: 204 VVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNE 263

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           + +++ +ML+A I P+ VT+V +L++C     ++ GR   + ++ + G+E +      ++
Sbjct: 264 AFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHIS-ERGLETDVVVANALI 322

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            +  +   + +A E    M  K + I W A++  
Sbjct: 323 TMYCKCNCIQDARETFDRMS-KRDVISWSAMIAG 355



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 9/263 (3%)

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
           +  R +EA+ L   ++   +  +  T   I+  CA L   E G+ V   +D+  +  DI+
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           +GN+LI+ Y K GDV   ++VFR M  +D  TW++MI   A N H  K+ D F +M  A+
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           I P+ +T++ +L AC +  M+++ RE    +    G+E + A    ++ +  + G ++ A
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREIHT-VVKASGMETDVAVATALITMYSKCGEISLA 233

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLL---CNI 560
            E+ + M  + N + W A++ A   HR    A E+  K +      N   +V L   CN 
Sbjct: 234 CEIFQKMKER-NVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292

Query: 561 YAACNRWDNFRELRQMILDRGIK 583
             A NR    R +   I +RG++
Sbjct: 293 PEALNRG---RRIHSHISERGLE 312


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 292/723 (40%), Positives = 427/723 (59%), Gaps = 70/723 (9%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK--GDMKYACKVFRKIPRPSVCLWNTMIK 88
            ++ IH+Q IK GL       +KL+ FC          YA  VF  I  P++ +WNTM +
Sbjct: 3   SVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
           G++      + + +YL M+   + PD+YTFPFLLK   +    + G+++H HVLK GFD 
Sbjct: 63  GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVS-YKD---------------------------- 179
            ++V  +LIS Y   G ++ AR +FD+S ++D                            
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182

Query: 180 --DVVTWNAMFSGYKRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGK 236
             DVV+WNAM SGY     + E  +LF EM     V P   T+V V+SACA+   +++G+
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR 242

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
             H ++ +     NL + NAL D+Y+  GE                              
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGE------------------------------ 272

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
            V+ A + FD +  +D + W  +I GY  +N ++EAL LF+EM  S   P++ T++SIL 
Sbjct: 273 -VETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 331

Query: 357 ACANLGALELGEWVKTYIDK---NKVKNDIFVGNALIDMYCKCGDVEKAQRVF-REMLRK 412
           ACA+LGA+++G W+  YI+K     V N   +  +LIDMY KCGD++ AQ+VF   M  +
Sbjct: 332 ACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNR 391

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
              TW AMI G A++G  + + D+FS+M    I PD++T+VG+LSAC+H+GM+D GR  F
Sbjct: 392 SLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIF 451

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
             MT  + I P   HYGCM+DLLG +G   EA E+I  MPM+P+ ++W +LL AC++H +
Sbjct: 452 RSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN 511

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI-KKTPGCSMI 591
            E+ E  AK++++++P N   YVLL NIYAA  RW+   ++R ++ D+G+ KK PGCS I
Sbjct: 512 LELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSI 571

Query: 592 EMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQ 651
           E++ VVHEF+ GDK HPQ +EIY  L+EM   L+  G++PD SEV  ++ EE +E A+  
Sbjct: 572 EIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRH 631

Query: 652 HSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH 711
           HSEKLA+AFGLIS+ PG  + I+KNLR+C +CH   KL+S +Y RE+I RD+TRF HF+ 
Sbjct: 632 HSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRD 691

Query: 712 GSC 714
           G C
Sbjct: 692 GVC 694


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/689 (39%), Positives = 414/689 (60%), Gaps = 64/689 (9%)

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + YA  +F  I  P++ +WNTM +G++        + +Y+ M+   + P++Y+FPFLLK 
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------VSY 177
             +  A+  G+++H HVLK G+D  ++V  +LIS Y   G ++ A  +FD       VSY
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134

Query: 178 K------------------------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
                                     DVV+WNAM SGY     F E  +L+ +M +  V 
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P   T+V V+SACA+   +++G++ H ++++     N+ + N L D+Y+ CGE       
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGE------- 247

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                                   V+ A   F  + ++D + W  +I G+  +N ++EAL
Sbjct: 248 ------------------------VETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEAL 283

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK--NKVKNDIFVGNALID 391
            LF+EM  S   P++ T++S+L ACA+LGA+++G W+  YI+K    V N   +  +LID
Sbjct: 284 LLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLID 343

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCGD+E A++VF  ML +   +W AMI G A++G  + + D+FS+M +  I PD++T
Sbjct: 344 MYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDIT 403

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +VG+LSAC+H+GM+D GR  F  M+  + I P   HYGCM+DLLG  G   EA E+I+ M
Sbjct: 404 FVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTM 463

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           PM+P+ ++W +LL AC++H + E+ E  A+ +++++P+N   YVLL NIYA   RWD   
Sbjct: 464 PMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVA 523

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
           ++R ++ D+GIKK PGCS IE++ VVHEF+ GDK HP+ +EIY  L+EM   ++  G++P
Sbjct: 524 KIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVP 583

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           D SEV  ++ EE KE A+  HSEKLA+AFGLIS+ PG  + IVKNLR+C +CH   KL+S
Sbjct: 584 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 643

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +Y RE+I RD+TR H  K G  SC DYW
Sbjct: 644 KIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 211/452 (46%), Gaps = 72/452 (15%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           + +G +  A K+F +I    V  WN MI GY    + K  + +Y DM+K++V+PD  T  
Sbjct: 142 ASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMV 201

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            ++    +  ++E G++LH  +   GF S++ + N LI  Y  CGEV+ A G+F    K 
Sbjct: 202 TVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKK 261

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           DV++WN +  G+  +  + E   LF EM R G  P  VT++ VL ACA L  +D+G+  H
Sbjct: 262 DVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIH 321

Query: 240 RYV-KECKIVPNL-ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            Y+ K  K V N   L  +L DMYA CG++  A ++F ++  + + SW A++ G+   G+
Sbjct: 322 VYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGK 381

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
            + A   FD                            LF +M+ + I PD+ T V +L+A
Sbjct: 382 ANAA---FD----------------------------LFSKMRKNGIDPDDITFVGLLSA 410

Query: 358 CANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           C++ G L+LG  +   + ++ K+   +     +ID+   CG  ++A+ + R M       
Sbjct: 411 CSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTM------- 463

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
                                       + PD V +  +L AC     V+ G  Y  ++ 
Sbjct: 464 ---------------------------PMEPDGVIWCSLLKACKMHNNVELGESYAQNLI 496

Query: 477 IQHGIEP-NEAHYGCMVDLLGRAGHLNEALEV 507
               IEP N   Y  + ++   AG  ++  ++
Sbjct: 497 ---KIEPENPGSYVLLSNIYATAGRWDQVAKI 525


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/689 (39%), Positives = 428/689 (62%), Gaps = 3/689 (0%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           QIH   +K+G   +  VQN LV F  +E G++  A KVF ++   +V  W +MI GY+R 
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFY-AECGELDSARKVFDEMSERNVVSWTSMICGYARR 213

Query: 94  DSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
           D  K+ V ++  M++  +V P++ T   ++    +   +E G++++  +   G + +  +
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM 273

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            +AL+  Y  C  +D+A+ +FD     ++   NAM S Y R     E   +F  M   GV
Sbjct: 274 VSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGV 333

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P  ++++  +S+C++L+++  GK  H YV          + NAL DMY  C     A  
Sbjct: 334 RPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFR 393

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           IF  + NK V++W +IV GY+  G+VD A + F+ MPE++ V W  +I G ++ + F EA
Sbjct: 394 IFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEA 453

Query: 333 LTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           + +F  MQ+   +  D  T++SI +AC +LGAL+L +W+  YI+KN ++ D+ +G  L+D
Sbjct: 454 IEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVD 513

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           M+ +CGD E A  +F  +  +D   WTA I  +A+ G+ ++++++F  M+   + PD V 
Sbjct: 514 MFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVA 573

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +VG L+AC+H G+V +G+E F  M   HG+ P + HYGCMVDLLGRAG L EA+++I++M
Sbjct: 574 FVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDM 633

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           PM+PN ++W +LL ACRV  + EMA  AA++I  L P+    YVLL N+YA+  RW++  
Sbjct: 634 PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMA 693

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
           ++R  + ++G++K PG S I++ G  HEF +GD+SHP+   I   LDE++     +G++P
Sbjct: 694 KVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVP 753

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           D+S V +DV E++K   + +HSEKLAMA+GLISS  G TIRIVKNLR+C DCH  AK  S
Sbjct: 754 DLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFAS 813

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            VY+RE+I+RD  RFH+ + G CSC D+W
Sbjct: 814 KVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/518 (29%), Positives = 256/518 (49%), Gaps = 50/518 (9%)

Query: 1   MFSNSSISPPSTLTQE-----TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV 55
           + + ++ + PS L Q      TP  S ++ C+++ +LK  H    K GL  + +   KLV
Sbjct: 14  VLATTTTTKPSLLNQSKCTKATP--SSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLV 71

Query: 56  TFCC--SEKGDMKYACKVFRKIPRPSVC-LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112
              C    +  + +A +VF        C ++N++I+GY+        +L++L M+ S + 
Sbjct: 72  ARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGIS 131

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           PD YTFPF L    +  A   G ++H  ++K G+   +FVQN+L+  Y  CGE+D AR +
Sbjct: 132 PDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKV 191

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKD 231
           FD   + +VV+W +M  GY R     +   LF  M R + V P SVT+V V+SACAKL+D
Sbjct: 192 FDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLED 251

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           L+ G++ + +++   I  N ++ +AL DMY  C                           
Sbjct: 252 LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC--------------------------- 284

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
                 +D+A++ FD+    +  L  AM   Y+R    REAL +F  M  S +RPD  ++
Sbjct: 285 ----NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISM 340

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           +S +++C+ L  +  G+    Y+ +N  ++   + NALIDMY KC   + A R+F  M  
Sbjct: 341 LSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSN 400

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           K   TW +++ G   NG  D + + F  M   +I    V++  ++S      + +E  E 
Sbjct: 401 KTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEV 456

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
           F  M  Q G+  +      M+ +    GHL  AL++ K
Sbjct: 457 FCSMQSQEGVNADGV---TMMSIASACGHLG-ALDLAK 490


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/740 (39%), Positives = 440/740 (59%), Gaps = 41/740 (5%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV---TFCCSEKG--DMKYACKVFRKI 75
           +P  T  S+ Q  ++H+     G L +P     L+   T C S      ++YA  +F ++
Sbjct: 4   APWPTPGSVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRM 63

Query: 76  PRPSVCLWNTMIKGYSRIDSHKN-GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-VEF 133
           P  S  L++T ++   R  S  +  +++Y  M   DV PD +TF FL K   R  A V  
Sbjct: 64  P-CSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLL 122

Query: 134 GKELHCHVLKFGFDSSV-FVQNALISTYCLCGEVDMARGIFD-VSYKD------------ 179
           G+ LH    +    S+V  + + +I  Y   G    AR  FD  S KD            
Sbjct: 123 GRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLA 182

Query: 180 ------------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221
                             +VVTW  + SGY R  +  E    F  M   G+ P  VT++ 
Sbjct: 183 KMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIG 242

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI-KNK 280
           +LSAC +LKDL+ G   H  V + +++ +  L  AL DMYA CG+ G A E+F  + + +
Sbjct: 243 MLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGR 302

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
               W A++ GY   G VD+AR  FDQM + D + + ++I GY+   R REAL LF +M+
Sbjct: 303 GPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMR 362

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
              +  D FT+V +LTA A+LGAL  G  +   I++  V+ D+++G AL+DMY KCG VE
Sbjct: 363 RHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVE 422

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
           +A   F++M  +D  TW+AMI GLA NG G  +L+ F  M       + VTY+ VL+AC+
Sbjct: 423 EAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACS 482

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           H+ ++DEGR YF +M + H I P   HYGCM+DLLGR+G L+EA+++++ MPM+PN+++W
Sbjct: 483 HSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIW 542

Query: 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
            ++L ACRVH++ ++A+ AA  +L+L+P  +AVYV + NIY    +W++  ++R+++  R
Sbjct: 543 ASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKR 602

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
           G+KKT G S I + G VH+F+ GD+SHPQ  EI + ++E+   LK  GY P  S++ +DV
Sbjct: 603 GVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDV 662

Query: 641 GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIV 700
            EE+KE+A+  HSEKLA+AFGL+S  P + + I+KNLR+C DCH   KL+S +++RE+IV
Sbjct: 663 DEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNREIIV 722

Query: 701 RDKTRFHHFKHGSCSCKDYW 720
           RD++RFHHF+ G CSC D+W
Sbjct: 723 RDRSRFHHFRGGVCSCNDFW 742


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/710 (38%), Positives = 421/710 (59%), Gaps = 9/710 (1%)

Query: 19  LISPIETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            +S ++ C +   + + ++IH+    +G+ T+  V   L+T   S+ G++  AC+VF K+
Sbjct: 160 FLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMY-SKCGEISVACEVFHKM 218

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              +V  W  +I+  ++         +Y  ML++ + P+  TF  LL       A+  G+
Sbjct: 219 TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGR 278

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF-----SG 190
            +H H+ + G ++ + V NALI+ YC C  V  AR IFD   K DV++W+AM      SG
Sbjct: 279 RIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSG 338

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           YK  +  DE  +L   M R+GV P  VT + +L AC     L+ G++ H  + +     +
Sbjct: 339 YKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELD 398

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
             L+ A+ +MYA CG +  A ++F  + NK+V++WT+ ++ YI  G +  A + F +MP 
Sbjct: 399 RSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPT 458

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           R+ V W  MI GY +     +   L   M+    +PD  T+++IL AC  L  LE G+ V
Sbjct: 459 RNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLV 518

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
                K  +++D  V  +LI MY KCG V +A+ VF +M  +D   W AM+ G   +G G
Sbjct: 519 HAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDG 578

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
            +++D+F +ML+  + P+E+T   V+SAC+  G+V EGRE F  M     + P + HYGC
Sbjct: 579 LEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGC 638

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           MVDLLGRAG L EA E I++MP +P+  VW ALLGAC+ H + ++AE AA  ILEL+P  
Sbjct: 639 MVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSY 698

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
            +VY+ L NIYA   RWD+  ++R+++ DRG+KK  G S IE++G +H FVA D +HP+ 
Sbjct: 699 ASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEI 758

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
             I+ +L+ +T ++K  GY PD+  V  DV +  KE+A+  HSEKLA+A+GL+ +  G  
Sbjct: 759 DAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTP 818

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IRI+KNLR+C DCH   K +S +  RE++ RD  RFH+F +G+CSC D+W
Sbjct: 819 IRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 162/615 (26%), Positives = 285/615 (46%), Gaps = 75/615 (12%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           IE C    +    K +H Q  +LG+  +  + N L+ F  S+  D+  A +VFR++    
Sbjct: 63  IEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFY-SKFEDVASAEQVFRRMTLRD 121

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           V  W++MI  Y+  +        +  M  +++ P+  TF  +LK       +E G+++H 
Sbjct: 122 VVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHT 181

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            V   G ++ V V  ALI+ Y  CGE+ +A  +F    + +VV+W A+     + ++ +E
Sbjct: 182 IVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNE 241

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             +L+ +M + G+ P +VT V +L++C   + L+ G+R H ++ E  +  ++I+ NAL  
Sbjct: 242 AFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALIT 301

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY  C  +  A EIF  +  +DVISW+A++ GY   G  D  ++  D             
Sbjct: 302 MYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKD--KESID------------- 346

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK--- 376
                      E   L   M+   + P++ T +SIL AC   GALE G  +   + K   
Sbjct: 347 -----------EVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGF 395

Query: 377 ---------------------------NKVKN-DIFVGNALIDMYCKCGDVEKAQRVFRE 408
                                      +K+ N ++    + + MY KCGD+  A++VF E
Sbjct: 396 ELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSE 455

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M  ++  +W  MI G A NG   K  ++ S M      PD VT + +L AC     ++ G
Sbjct: 456 MPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERG 515

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           +   A+  ++ G+E +      ++ +  + G + EA  V   M  + +++ W A+L    
Sbjct: 516 KLVHAE-AVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNR-DTVAWNAMLAGYG 573

Query: 529 VHRDA-EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM--ILDRGIKKT 585
            H D  E  ++  + + E    NE   + L  + +AC+R    +E R++  ++    K T
Sbjct: 574 QHGDGLEAVDLFKRMLKERVSPNE---ITLTAVISACSRAGLVQEGREIFRMMQEDFKMT 630

Query: 586 P-----GCSMIEMNG 595
           P     GC M+++ G
Sbjct: 631 PRKQHYGC-MVDLLG 644



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 163/334 (48%), Gaps = 33/334 (9%)

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +  +  E  +L G ++++G+L  S T   V+  CAK +  + GK  H+ + E  +  ++ 
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           L N+L + Y+               K +DV S                A Q F +M  RD
Sbjct: 93  LGNSLINFYS---------------KFEDVAS----------------AEQVFRRMTLRD 121

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W++MI  Y   N   +A   F  M  +NI P+  T +SIL AC N   LE G  + T
Sbjct: 122 VVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHT 181

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            +    ++ D+ V  ALI MY KCG++  A  VF +M  ++  +WTA+I   A +   ++
Sbjct: 182 IVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNE 241

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           + +++ QML+A I P+ VT+V +L++C     ++ GR   + ++ + G+E +      ++
Sbjct: 242 AFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHIS-ERGLETDMIVANALI 300

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            +  +   + EA E+   M  K + I W A++  
Sbjct: 301 TMYCKCNSVQEAREIFDRMS-KRDVISWSAMIAG 333



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 151/299 (50%), Gaps = 14/299 (4%)

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
           +  R REA+ L   ++   +  +  T   ++  CA     E G+ V   +D+  V+ DI+
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           +GN+LI+ Y K  DV  A++VFR M  +D  TW++MI   A N H  K+ D F +M  A+
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           I P+ +T++ +L AC +  ++++GR+    +    G+E + A    ++ +  + G ++ A
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHT-IVKAMGMETDVAVATALITMYSKCGEISVA 211

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLL--CNI 560
            EV   M  + N + W A++ A   HR    A    +Q+L+  + P+      LL  CN 
Sbjct: 212 CEVFHKMTER-NVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNT 270

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
             A NR    R +   I +RG++      MI  N ++  +   + S  + +EI+ ++ +
Sbjct: 271 PEALNRG---RRIHSHISERGLET----DMIVANALITMYCKCN-SVQEAREIFDRMSK 321


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/647 (41%), Positives = 415/647 (64%), Gaps = 16/647 (2%)

Query: 1   MFSNSSISPPSTLT----------QETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTV 50
           +F NSS   P T T          +E PL+S +E C+S+ QLKQI +Q +  GL+ N   
Sbjct: 32  IFHNSSSLSPITKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFA 91

Query: 51  QNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-K 108
            ++LV FC  SE  ++ Y  ++  +I   +V  WN  I+GY      + G ++Y  ML  
Sbjct: 92  ASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLG 151

Query: 109 SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM 168
             ++PDN+T+P LLKG     +   G  +  HVLKFGF+  +FV NA I+    CGE+ +
Sbjct: 152 GTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSV 211

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           A  +F+ S   D+VTWN+M +G  +     E  K++ EME + V P  +T++ ++S+C++
Sbjct: 212 AYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ 271

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           ++DL++GK  H Y+KE  +   + L NAL DMY  CGE+  A  +F N+  K ++SWT +
Sbjct: 272 VQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTM 331

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           V GY   G +D+AR+   ++PE+  V W A+I G ++  + +EAL LF EMQ   I PD+
Sbjct: 332 VLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDK 391

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T+V+ L+AC+ LGAL++G W+  YI+++K+  D+ +G AL+DMY KCG++ +A +VF E
Sbjct: 392 VTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEE 451

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           + +++  TWTA+I GLA++G+   +L  FS+M+   I+PDE+T++GVLSAC H G+V+EG
Sbjct: 452 IPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEG 511

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           R+YF++M+ +  + P   HY CMVDLLGRAGHL EA E++KNMPM  ++ V GAL  ACR
Sbjct: 512 RKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACR 571

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
           V+ + ++ E  A ++LE+DP +   YVLL ++Y+    W   R  R+++ D+G++KTPGC
Sbjct: 572 VYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGC 631

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV----GYMP 631
           S++E+NG+VHEFV  D SHPQ++ IY  L  +T  L  +    GY P
Sbjct: 632 SLVEINGIVHEFVVRDVSHPQSEWIYECLVTLTKQLDVIVRKHGYFP 678


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/688 (41%), Positives = 399/688 (57%), Gaps = 32/688 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K +HS+ +  G  ++  V   LV    ++ G  K   +VF K+    +  WNTMI G + 
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMY-AKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 305

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               +    +Y  M +  V P+  T+  LL       A+ +GKE+H  V K GF S + V
Sbjct: 306 GGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGV 365

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
           QNALIS Y  CG +  AR +FD   + DV++W AM  G  +     E   ++ EM++ GV
Sbjct: 366 QNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGV 425

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P  VT   +L+AC+    L+ G+R H+ V E  +  +  + N L +MY+ CG +     
Sbjct: 426 EPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSV----- 480

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
                  KD                   ARQ FD+M +RD V + AMI GY   N  +EA
Sbjct: 481 -------KD-------------------ARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEA 514

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L LF  +Q   ++PD+ T +++L ACAN G+LE    + T + K    +D  VGNAL+  
Sbjct: 515 LKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVST 574

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG    A  VF +M +++  +W A+I G A +G G  +L +F +M    + PD VT+
Sbjct: 575 YAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTF 634

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           V +LSAC+H G+++EGR YF  M+    I P   HYGCMVDLLGRAG L+EA  +IK MP
Sbjct: 635 VSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMP 694

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            + N+ +WGALLGACR+H +  +AE AA+  L+LD DN  VYV L ++YAA   WD+  +
Sbjct: 695 FQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAK 754

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           LR+++  RG+ K PG S I++   +H FVA D+SHPQ+++IY +LD +T  +K  GY+PD
Sbjct: 755 LRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPD 814

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
              V  DV E +KE AV  HSE+LA+A+GLIS+ PG  I I KNLR+C DCH   K +S 
Sbjct: 815 TRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISK 874

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + DRE+I RD  RFHHFK G CSC DYW
Sbjct: 875 IVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  261 bits (668), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 161/564 (28%), Positives = 283/564 (50%), Gaps = 43/564 (7%)

Query: 17  TPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           T ++S + +C+S   L   ++IH Q ++ GLL +  V N ++    ++ G ++ A +VF 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMY-AKCGSIEEAREVFD 185

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           K+ + SV  W   I GY+     +    I+  M +  V P+  T+  +L  F+   A+++
Sbjct: 186 KMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKW 245

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK +H  +L  G +S   V  AL+  Y  CG     R +F+     D++ WN M  G   
Sbjct: 246 GKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 305

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
              ++E  +++ +M+R+GV+P  +T V++L+AC     L  GK  H  V +     ++ +
Sbjct: 306 GGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGV 365

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
           +NAL  MY+ CG +  A  +F  +  KDVISWTA++ G        +A+  F        
Sbjct: 366 QNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGG--------LAKSGFGA------ 411

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
                            EALT+++EMQ + + P+  T  SIL AC++  ALE G  +   
Sbjct: 412 -----------------EALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQ 454

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           + +  +  D  VGN L++MY  CG V+ A++VF  M+++D   + AMI G A +  G ++
Sbjct: 455 VVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEA 514

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           L +F ++    + PD+VTY+ +L+AC ++G ++  RE    +  + G   + +    +V 
Sbjct: 515 LKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHT-LVRKGGFFSDTSVGNALVS 573

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH-RDAEMAEMAAKQILE-LDPDNE 551
              + G  ++A  V + M  K N I W A++G    H R  +  ++  +  +E + PD  
Sbjct: 574 TYAKCGSFSDASIVFEKMT-KRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPD-- 630

Query: 552 AVYVLLCNIYAACNRWDNFRELRQ 575
              V   ++ +AC+      E R+
Sbjct: 631 --IVTFVSLLSACSHAGLLEEGRR 652



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 149/554 (26%), Positives = 268/554 (48%), Gaps = 41/554 (7%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP--RPSVCLWNTMIKGY 90
           +Q+H   I+   + +    N L+     + G ++ A +V++K+     +V  WN M+ GY
Sbjct: 43  RQVHQHIIQHRTVPDQYTVNALINMYI-QCGSIEEARQVWKKLSYMERTVHSWNAMVVGY 101

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
            +    +  + +   M +  + PD  T    L       A+E+G+E+H   ++ G    V
Sbjct: 102 IQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDV 161

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            V N +++ Y  CG ++ AR +FD   K  VV+W     GY    + +   ++F +ME++
Sbjct: 162 KVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQE 221

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           GV+P  +T + VL+A +    L  GK  H  +       +  +  AL  MYA CG     
Sbjct: 222 GVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDC 281

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            ++F  + N+D+I+W  ++ G                + E  Y               + 
Sbjct: 282 RQVFEKLVNRDLIAWNTMIGG----------------LAEGGY---------------WE 310

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           EA  ++ +MQ   + P++ T V +L AC N  AL  G+ + + + K    +DI V NALI
Sbjct: 311 EASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALI 370

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            MY +CG ++ A+ VF +M+RKD  +WTAMI GLA +G G ++L ++ +M +A + P+ V
Sbjct: 371 SMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRV 430

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-CMVDLLGRAGHLNEALEVIK 509
           TY  +L+AC+    ++ GR       ++ G+   +AH G  +V++    G + +A +V  
Sbjct: 431 TYTSILNACSSPAALEWGRR-IHQQVVEAGL-ATDAHVGNTLVNMYSMCGSVKDARQVFD 488

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNRW 567
            M ++ + + + A++G    H   + A     ++ E  L PD +  Y+ + N  A     
Sbjct: 489 RM-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPD-KVTYINMLNACANSGSL 546

Query: 568 DNFRELRQMILDRG 581
           +  RE+  ++   G
Sbjct: 547 EWAREIHTLVRKGG 560



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/532 (22%), Positives = 232/532 (43%), Gaps = 122/532 (22%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           ++++G    S   + +L  C ++KDL  G++ H+++ + + VP+    NAL +MY  CG 
Sbjct: 14  LQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGS 73

Query: 267 MGFALEIFGNIK--NKDVISWTAIVTGYINRGQVDMARQYFDQM------PERDYVL--- 315
           +  A +++  +    + V SW A+V GYI  G ++ A +   QM      P+R  ++   
Sbjct: 74  IEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFL 133

Query: 316 ----------------WTAMIDG--------------YLRVNRFREALTLFREMQTSN-- 343
                           + AM  G              Y +     EA  +F +M+  +  
Sbjct: 134 SSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVV 193

Query: 344 -----------------------------IRPDEFTIVSILTACANLGALELGEWVKTYI 374
                                        + P+  T +S+L A ++  AL+ G+ V + I
Sbjct: 194 SWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRI 253

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
                ++D  VG AL+ MY KCG  +  ++VF +++ +D   W  MI GLA  G+ +++ 
Sbjct: 254 LNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEAS 313

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE---------YFADMTIQHG----- 480
           ++++QM R  ++P+++TYV +L+AC ++  +  G+E         + +D+ +Q+      
Sbjct: 314 EVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMY 373

Query: 481 ----------------IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP---MKPNSIVWG 521
                           +  +   +  M+  L ++G   EAL V + M    ++PN + + 
Sbjct: 374 SRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYT 433

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEA-VYVLLCNIYAACNRWDNFRELRQMILDR 580
           ++L AC      E      +Q++E     +A V   L N+Y+ C    + ++ RQ + DR
Sbjct: 434 SILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCG---SVKDARQ-VFDR 489

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
            I++     ++  N +    + G  +H   KE     D +  +    G  PD
Sbjct: 490 MIQR----DIVAYNAM----IGGYAAHNLGKEALKLFDRLQEE----GLKPD 529



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 156/325 (48%), Gaps = 34/325 (10%)

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           A+ + + +Q    + +    + +L  C  +  L  G  V  +I +++   D +  NALI+
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 392 MYCKCGDVEKAQRVFREM--LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           MY +CG +E+A++V++++  + +   +W AM+VG    G+ +K+L +  QM +  + PD 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 450 VTYVGVLSACTHTGMVDEGRE-YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
            T +  LS+C   G ++ GRE +F  M  Q G+  +     C++++  + G + EA EV 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAM--QAGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD----NEAVYVLLCNIYA-- 562
             M  K + + W   +G    + D   +E A +   +++ +    N   Y+ + N ++  
Sbjct: 185 DKME-KKSVVSWTITIGG---YADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSP 240

Query: 563 ACNRWDNFRELRQMILDRGIKK--TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL--- 617
           A  +W   + +   IL+ G +     G ++++M        A   S+   ++++ KL   
Sbjct: 241 AALKWG--KAVHSRILNAGHESDTAVGTALVKM-------YAKCGSYKDCRQVFEKLVNR 291

Query: 618 -----DEMTSDLKFVGYMPDISEVF 637
                + M   L   GY  + SEV+
Sbjct: 292 DLIAWNTMIGGLAEGGYWEEASEVY 316


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 272/701 (38%), Positives = 423/701 (60%), Gaps = 42/701 (5%)

Query: 22  PIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK-GDMKYACKVFRKIPRPSV 80
           P++ C +  +  Q+H+ +IK   L +P+V ++L+      +  +++YA  +F  I  P++
Sbjct: 21  PLQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTL 80

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
             WN +IK Y       + + ++  +L  D  PD++T P +LKG  R  A++ GK++H  
Sbjct: 81  VSWNLLIKCYIENQRSNDAIALFCKLL-CDFVPDSFTLPCVLKGCARLGALQEGKQIHGL 139

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           VLK GF    FV ++L+S Y  CGE+++ R +FD     DVV+WN++  GY R  + +  
Sbjct: 140 VLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELA 199

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
            ++F EM  K     ++                                       L D 
Sbjct: 200 LEMFEEMPEKDSFSWTI---------------------------------------LIDG 220

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
            +  G++  A ++F  +  ++ +SW A++ GY+  G  + A++ FDQMPER  V W +MI
Sbjct: 221 LSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMI 280

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            GY R  +F +AL LF  M   +I P+  TI+  ++A + + +L  G WV +YI K+  K
Sbjct: 281 TGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFK 340

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D  +G  LI+MY KCG V+ A RVFR + +K    WT++IVGL ++G  +++L++F +M
Sbjct: 341 TDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEM 400

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
            R  + P  +T++GVL+AC+H G  ++   YF  MT  +GI+P+  HYGC++D+L RAGH
Sbjct: 401 CRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGH 460

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L EA + I+ MP+K N ++W +LL   R H +  M E AA+ +++L PD    YV+L N+
Sbjct: 461 LEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNM 520

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YAA   W+  R++R+M+  +G+KK PGCS IE  G +HEF+ GDKSHPQT+EIY+KL EM
Sbjct: 521 YAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEM 580

Query: 621 TSDLKFVGYMPDISEVFLDVGEE-DKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
              L   G++PD ++V L + E+ +KE  +  HSE+LA+AFGL++   G  IRI+KNLR+
Sbjct: 581 KKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRI 640

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C DCH + KL+S +Y+RE+I+RD +RFHHFK GSCSCKD+W
Sbjct: 641 CNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/719 (39%), Positives = 416/719 (57%), Gaps = 38/719 (5%)

Query: 9   PPSTLT----QETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           P ST T    Q   L+  +   +S+ Q  Q+H+     G L   T     +  C +  G 
Sbjct: 14  PSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGH 73

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           M YA  +F +I   +  LWN+MI+GY+  +S    + +YL ML    +PDN+T+PF+LK 
Sbjct: 74  MPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKA 133

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
               +  E G+++H  V+  G +  V+V N+++S Y   G+V+ AR +FD     D+ +W
Sbjct: 134 CGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSW 193

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-- 242
           N M SG+ +  +     ++FG+M R G +    T++ +LSAC  + DL VGK  H YV  
Sbjct: 194 NTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVR 253

Query: 243 -KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
             E   V N  L N++ DMY  C                                 V  A
Sbjct: 254 NGESGRVCNGFLMNSIIDMYCNCE-------------------------------SVSCA 282

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
           R+ F+ +  +D V W ++I GY +     +AL LF  M      PDE T++S+L AC  +
Sbjct: 283 RKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQI 342

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            AL LG  V++Y+ K     ++ VG ALI MY  CG +  A RVF EM  K+    T M+
Sbjct: 343 SALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMV 402

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G  I+G G +++ +F +ML   + PDE  +  VLSAC+H+G+VDEG+E F  MT  + +
Sbjct: 403 TGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSV 462

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           EP   HY C+VDLLGRAG+L+EA  VI+NM +KPN  VW ALL ACR+HR+ ++A ++A+
Sbjct: 463 EPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQ 522

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           ++ EL+PD  + YV L NIYAA  RW++   +R ++  R ++K P  S +E+N +VH+F 
Sbjct: 523 KLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFF 582

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
            GD SH Q+ +IY KL ++   LK  GY PD S V  DV EE KE+ ++ HSE+LA+AF 
Sbjct: 583 VGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFA 642

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LI++GPG TIRI KNLR+C DCH + K++S + +RE+I+RD  RFHHF+ G CSC  YW
Sbjct: 643 LINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/693 (41%), Positives = 402/693 (58%), Gaps = 32/693 (4%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS-VCLWNTMI 87
           +   K  H + ++L L  +  + + ++    +   + +Y   VF K P  S   L+NTMI
Sbjct: 17  LKHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTNSNTFLYNTMI 76

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           +G    D   N V +Y  M K+ + PD++TF F+LK   R      G  +H  V K GFD
Sbjct: 77  RGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFD 136

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
             VFV+  ++  Y  CG +  A  +FD     +VV+W  M  G     +F E   LF  +
Sbjct: 137 CDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGL 196

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
              G+ P    IV VL ACA+L DL+ G+   R ++EC +  N+ +  +L DMY  CG M
Sbjct: 197 LESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSM 256

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
                                          + AR  FD M E+D V W+AMI GY    
Sbjct: 257 -------------------------------EEARFVFDGMVEKDIVCWSAMIQGYASNG 285

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
             REA+ LF EM+  N+RPD + +V  L++CA+LGALELG W K  ++  +  ++  +G 
Sbjct: 286 LPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGT 345

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           +LID Y KCG +E+A  V++ M  KD+  + A+I GLA+ G    +  +F QM +  I P
Sbjct: 346 SLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPP 405

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           +E T+VG+L  CTH G+VD+GR YF  M+    + P   HYGCMVDLL RAG L+EA  +
Sbjct: 406 NEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNL 465

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           IK MPMK N IVWG+LLG CR+HR+ ++AE   KQ++EL+P N   YVLL NIY+A  RW
Sbjct: 466 IKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRW 525

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           D   ++R  + ++G++K PG S +E++GVVHEF+ GD SHP +++IY KL+ +  DLK  
Sbjct: 526 DEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEA 585

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           GY P    V  DV EE+KE  +  HSEKLA+AF LIS+G    IR+VKNLR+C DCH   
Sbjct: 586 GYNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAI 645

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           K +S V  RE+++RD  RFH F  G+CSC+DYW
Sbjct: 646 KHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/688 (40%), Positives = 405/688 (58%), Gaps = 32/688 (4%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            K +HS  +  G  ++  V   LV    ++ G  K   +VF K+    +  WNTMI G + 
Sbjct: 365  KTVHSHILNAGHESDLAVGTALVKMY-AKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 93   IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              + +    IY  M +  + P+  T+  LL       A+ +G+E+H  V+K GF   + V
Sbjct: 424  GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 153  QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            QNALIS Y  CG +  AR +F+   + D+++W AM  G  +     E   +F +M++ G+
Sbjct: 484  QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543

Query: 213  LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
             P  VT   +L+AC+    LD G+R H+ V E  +  +  + N L +MY+ CG +     
Sbjct: 544  KPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSV----- 598

Query: 273  IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
                   KD                   ARQ FD+M +RD V + AMI GY   N  +EA
Sbjct: 599  -------KD-------------------ARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEA 632

Query: 333  LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
            L LF  +Q   ++PD+ T +++L ACAN G+LE  + + + + K+   +D  +GNAL+  
Sbjct: 633  LKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVST 692

Query: 393  YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
            Y KCG    A  VF +M++++  +W A+I G A +G G   L +F +M    I PD VT+
Sbjct: 693  YAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTF 752

Query: 453  VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
            V +LSAC+H G+++EGR YF  M+   GI P   HYGCMVDLLGRAG L+E   +IK MP
Sbjct: 753  VSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMP 812

Query: 513  MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
             + N+ +WGALLGACR+H +  +AE AA+  L+LDPDN AVYV L ++YAA   WD+  +
Sbjct: 813  FQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAK 872

Query: 573  LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
            LR+++  RG+ K PG S IE+   +H FVA D+SHP++++IY +LD++T  +K  GY+PD
Sbjct: 873  LRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPD 932

Query: 633  ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
               V  DV E +KE AV  HSE+LA+A+GLIS+ PG  IRI KNLR+C DCH   K ++ 
Sbjct: 933  TRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITK 992

Query: 693  VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + DRE++ RD  RFHHFK G CSC DYW
Sbjct: 993  IVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 164/586 (27%), Positives = 293/586 (50%), Gaps = 48/586 (8%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+S  ++  ++   ++IH + +K  LL +  V N ++    ++ G +  A +VF K+   
Sbjct: 250 LLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMY-AKCGSIHEAREVFDKMETK 308

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           SV  W  +I GY+     +    I+  M +  V P+  T+  +L  F+   A+++GK +H
Sbjct: 309 SVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVH 368

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
            H+L  G +S + V  AL+  Y  CG     R +F+     D++ WN M  G      ++
Sbjct: 369 SHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWE 428

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E  +++ +M+R+G++P  +T V++L+AC     L  G+  H  V +   + ++ ++NAL 
Sbjct: 429 EASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALI 488

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
            MYA CG +  A  +F  +  KD+ISWT                               A
Sbjct: 489 SMYARCGSIKDARLLFNKMVRKDIISWT-------------------------------A 517

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           MI G  +     EAL +F++MQ + ++P+  T  SIL AC++  AL+ G  +   + +  
Sbjct: 518 MIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAG 577

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +  D  V N L++MY  CG V+ A++VF  M ++D   + AMI G A +  G ++L +F 
Sbjct: 578 LATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFD 637

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           ++    + PD+VTY+ +L+AC ++G ++  +E  + + ++ G   + +    +V    + 
Sbjct: 638 RLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHS-LVLKDGYLSDTSLGNALVSTYAKC 696

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVH-RDAEMAEMAAKQILE-LDPDNEAVYVL 556
           G  ++AL V   M MK N I W A++G C  H R  ++ ++  +  +E + PD     V 
Sbjct: 697 GSFSDALLVFDKM-MKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPD----IVT 751

Query: 557 LCNIYAACNRWDNFRELRQ----MILDRGIKKTP---GCSMIEMNG 595
             ++ +AC+      E R+    M  D GI  T    GC M+++ G
Sbjct: 752 FVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGC-MVDLLG 796



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 144/553 (26%), Positives = 258/553 (46%), Gaps = 39/553 (7%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP--SVCLWNTMIKGY 90
           +++H   I+   + +    N L+     + G ++ A +V+ K+     +V  WN M+ GY
Sbjct: 161 REVHEHIIQHCTVLDQYTVNALINMYI-QCGSIEEARQVWNKLNHTERTVHSWNAMVVGY 219

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
            +    +  + +  +M +  +     T   LL       A+E G+E+H   +K      V
Sbjct: 220 VQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDV 279

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            V N +++ Y  CG +  AR +FD      VV+W  +  GY      +   ++F +M+++
Sbjct: 280 NVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQE 339

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           GV+P  +T + VL+A +    L  GK  H ++       +L +  AL  MYA CG     
Sbjct: 340 GVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDC 399

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            ++F  + N+D+I+W  ++ G    G                                + 
Sbjct: 400 RQVFEKLVNRDLIAWNTMIGGLAEGGN-------------------------------WE 428

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           EA  ++ +MQ   + P++ T V +L AC N  AL  G  + + + K+    DI V NALI
Sbjct: 429 EASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALI 488

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            MY +CG ++ A+ +F +M+RKD  +WTAMI GLA +G G ++L +F  M +A + P+ V
Sbjct: 489 SMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRV 548

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           TY  +L+AC+    +D GR       I+ G+  +      +V++    G + +A +V   
Sbjct: 549 TYTSILNACSSPAALDWGRR-IHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDR 607

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNRWD 568
           M  + + + + A++G    H   + A     ++ E  L PD +  Y+ + N  A     +
Sbjct: 608 MTQR-DIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPD-KVTYINMLNACANSGSLE 665

Query: 569 NFRELRQMILDRG 581
             +E+  ++L  G
Sbjct: 666 WAKEIHSLVLKDG 678



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 170/357 (47%), Gaps = 38/357 (10%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACG 265
           ++++G    S   + +L  C ++KDL  G+  H ++ + C ++    + NAL +MY  CG
Sbjct: 132 LQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTV-NALINMYIQCG 190

Query: 266 EMGFALEIFGNIKN--KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
            +  A +++  + +  + V SW A+V GY+  G ++                        
Sbjct: 191 SIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIE------------------------ 226

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
                  EAL L REMQ   +     T + +L++C +  ALE G  +     K ++  D+
Sbjct: 227 -------EALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDV 279

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
            V N +++MY KCG + +A+ VF +M  K   +WT +I G A  GH + + ++F +M + 
Sbjct: 280 NVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQE 339

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            ++P+ +TY+ VL+A +    +  G+   + + +  G E + A    +V +  + G   +
Sbjct: 340 GVVPNRITYINVLNAFSGPAALKWGKTVHSHI-LNAGHESDLAVGTALVKMYAKCGSYKD 398

Query: 504 ALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLLCN 559
             +V + + +  + I W  ++G      + E A E+  +   E    N+  YV+L N
Sbjct: 399 CRQVFEKL-VNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLN 454



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 133/270 (49%), Gaps = 13/270 (4%)

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           A+ + + +Q    R +    + +L  C  +  L  G  V  +I ++    D +  NALI+
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 392 MYCKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           MY +CG +E+A++V+ ++   ++   +W AM+VG    G+ +++L +  +M +  +    
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 450 VTYVGVLSACTHTGMVDEGREYFAD-MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
            T + +LS+C     ++ GRE   + M  +   + N A+  C++++  + G ++EA EV 
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVAN--CILNMYAKCGSIHEAREVF 302

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLLCNIYA--ACN 565
             M  K + + W  ++G       +E+A E+  K   E    N   Y+ + N ++  A  
Sbjct: 303 DKMETK-SVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAAL 361

Query: 566 RWDNFRELRQMILDRGIKK--TPGCSMIEM 593
           +W   + +   IL+ G +     G ++++M
Sbjct: 362 KWG--KTVHSHILNAGHESDLAVGTALVKM 389


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/624 (41%), Positives = 412/624 (66%), Gaps = 9/624 (1%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK--GD 64
           +S  S  T+++  I  ++ C+SM  LKQI +Q ++ G   +    NK +  CC++   G+
Sbjct: 24  LSTSSHFTKKS-CIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMV-CCTDPSIGN 81

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + YA ++F  I  P + ++N +IK +++  S +  VL++  + +  + PDN+T+PF+ K 
Sbjct: 82  LHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKA 141

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
                 V  G++++  V+K G +   +V N+L+  Y   G V   R +F+   + DVV+W
Sbjct: 142 IGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSW 201

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           N + SGY + +++++   +F  M+++  L P   T+V  LSAC  LK L++GK  HRYV+
Sbjct: 202 NVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVR 261

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           E ++   + + NAL DMY  CG +  A EIF ++  K VI WT++V+GY+N GQ+D AR+
Sbjct: 262 E-QLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARE 320

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
            F++ P RD VLWTAMI+GY++ NRF +A+ LFREMQ   + PD FT+V++LT CA LG 
Sbjct: 321 LFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGT 380

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           LE G+W+  YID+NK+  D  VG ALI+MY KCG +EK+  +F  +  KD  +WT++I G
Sbjct: 381 LEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICG 440

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
           LA+NG   K+L++F++M++  + PD++T++GVLSAC+H G+V+EGR++F  MT  + IEP
Sbjct: 441 LAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEP 500

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV---WGALLGACRVHRDAEMAEMAA 540
              HYGC++DLLGRAG L+EA E+I+  P   N ++   +GALL ACR H + EM E  A
Sbjct: 501 KLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVA 560

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
           K+++ ++  + +V+ LL NIYA+ +RW++  ++R+ + D G+KK PGCS +E+NG+VHEF
Sbjct: 561 KRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEF 620

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDL 624
           + GD SHP+ +EIY  LD +   L
Sbjct: 621 LVGDASHPEMREIYSMLDSIAKPL 644


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/626 (41%), Positives = 414/626 (66%), Gaps = 8/626 (1%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE-KG 63
           S+ + P+T   +   IS +++C+SM  LKQIH+Q  ++GL  +    NKL+ FC     G
Sbjct: 26  STFTNPTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNG 85

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           ++ YA K+F+ I  P + ++N +IK +++  ++K  ++++  + +  + PDN+T+PF+ K
Sbjct: 86  NLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFK 145

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
                  V   ++L   V K G +   +V+N+LI  Y      D+ + +FD     DV++
Sbjct: 146 AIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVIS 205

Query: 184 WNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           WN M SGY + ++F++   +F  M E  G++P   T+V  LSAC  LK L++GK+ H YV
Sbjct: 206 WNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYV 265

Query: 243 KE-CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           ++  K  P  I+ NAL DMY  CG +  A  +F  + +K+VI WT +V+GY N G+++ A
Sbjct: 266 RDNVKFTP--IIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEA 323

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
           R+ F+  P RD V+WTAMI+GY++ NRF EA+ LFREMQ   ++PD+F +VS+LT CA  
Sbjct: 324 RELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQT 383

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
           GA+E G+W+  +ID+N++  D  VG ALI+MY KCG +EKA  +F  +  KD  +WT++I
Sbjct: 384 GAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSII 443

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            GLA+NG   K+L++FS+M +A + PD++T++GVLSAC+H G+V+EGR++F  M +++ I
Sbjct: 444 CGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQI 503

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI---VWGALLGACRVHRDAEMAEM 538
           +P   HYGC+VDLLGRAG LNEA E+IK +P +  +I   ++G+LL ACR++ + EM E 
Sbjct: 504 KPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGER 563

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
            AKQ+++ +  + +V+ LL NIYA  +RW++  ++R+ + D G+KKTPGCS IE++ ++H
Sbjct: 564 VAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIH 623

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDL 624
           EF +G  SHP+ +EIY  L+ M   L
Sbjct: 624 EFFSGHPSHPEMREIYYMLNIMAKPL 649


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 282/724 (38%), Positives = 427/724 (58%), Gaps = 45/724 (6%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           +++NS I   S         S I++     QLKQIH++ + LGL  +  +  KL+    S
Sbjct: 12  LYTNSGIHSDSFYA------SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLI-HASS 64

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
             GD+ +A +VF  +PRP +  WN +I+GYSR +  ++ +L+Y +M  + V PD++TFP 
Sbjct: 65  SFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPH 124

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD--VSYK 178
           LLK  +    ++ G+ +H  V + GFD+ VFVQN LI+ Y  C  +  AR +F+     +
Sbjct: 125 LLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPE 184

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
             +V+W A+ S Y +  +  E  ++F +M +  V P  V +V VL+A   L+DL  G+  
Sbjct: 185 RTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSI 244

Query: 239 HRYVKE--CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
           H  V +   +I P+L++  +L  MYA CG                               
Sbjct: 245 HASVVKMGLEIEPDLLI--SLNTMYAKCG------------------------------- 271

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
           QV  A+  FD+M   + +LW AMI GY +    REA+ +F EM   ++RPD  +I S ++
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           ACA +G+LE    +  Y+ ++  ++D+F+ +ALIDM+ KCG VE A+ VF   L +D   
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W+AMIVG  ++G   +++ ++  M R  + P++VT++G+L AC H+GMV EG  +F  M 
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA 451

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
             H I P + HY C++DLLGRAGHL++A EVIK MP++P   VWGALL AC+ HR  E+ 
Sbjct: 452 -DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           E AA+Q+  +DP N   YV L N+YAA   WD   E+R  + ++G+ K  GCS +E+ G 
Sbjct: 511 EYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR 570

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKL 656
           +  F  GDKSHP+ +EI  +++ + S LK  G++ +      D+ +E+ E  +  HSE++
Sbjct: 571 LEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERI 630

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           A+A+GLIS+  G  +RI KNLR CV+CH   KL+S + DRE++VRD  RFHHFK G CSC
Sbjct: 631 AIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSC 690

Query: 717 KDYW 720
            DYW
Sbjct: 691 GDYW 694


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 272/688 (39%), Positives = 427/688 (62%), Gaps = 3/688 (0%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           QIH   +K+G   +  VQN LV F  +E G++  A KVF ++   +V  W +MI GY+R 
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFY-AECGELDSARKVFDEMSERNVVSWTSMICGYARR 213

Query: 94  DSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
           D  K+ V ++  M++  +V P++ T   ++    +   +E G++++  +   G + +  +
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM 273

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            +AL+  Y  C  +D+A+ +FD     ++   NAM S Y R     E   +F  M   GV
Sbjct: 274 VSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGV 333

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P  ++++  +S+C++L+++  GK  H YV          + NAL DMY  C     A  
Sbjct: 334 RPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFR 393

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           IF  + NK V++W +IV GY+  G+VD A + F+ MPE++ V W  +I G ++ + F EA
Sbjct: 394 IFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEA 453

Query: 333 LTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           + +F  MQ+   +  D  T++SI +AC +LGAL+L +W+  YI+KN ++ D+ +G  L+D
Sbjct: 454 IEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVD 513

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           M+ +CGD E A  +F  +  +D   WTA I  +A+ G+ ++++++F  M+   + PD V 
Sbjct: 514 MFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVA 573

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +VG L+AC+H G+V +G+E F  M   HG+ P + HYGCMVDLLGRAG L EA+++I++M
Sbjct: 574 FVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDM 633

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           PM+PN ++W +LL ACRV  + EMA  AA++I  L P+    YVLL N+YA+  RW++  
Sbjct: 634 PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMA 693

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
           ++R  + ++G++K PG S I++ G  HEF +GD+SHP+   I   LDE++     +G++P
Sbjct: 694 KVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVP 753

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           D+S V +DV E++K   + +HSEKLAMA+GLISS  G TIRIVKNLR+C DCH  AK  S
Sbjct: 754 DLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFAS 813

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDY 719
            VY+RE+I+RD  RFH+ + G CSC D+
Sbjct: 814 KVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 155/518 (29%), Positives = 256/518 (49%), Gaps = 50/518 (9%)

Query: 1   MFSNSSISPPSTLTQE-----TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV 55
           + + ++ + PS L Q      TP  S ++ C+++ +LK  H    K GL  + +   KLV
Sbjct: 14  VLATTTTTKPSLLNQSKCTKATP--SSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLV 71

Query: 56  TFCC--SEKGDMKYACKVFRKIPRPSVC-LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112
              C    +  + +A +VF        C ++N++I+GY+        +L++L M+ S + 
Sbjct: 72  ARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGIS 131

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           PD YTFPF L    +  A   G ++H  ++K G+   +FVQN+L+  Y  CGE+D AR +
Sbjct: 132 PDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKV 191

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKD 231
           FD   + +VV+W +M  GY R     +   LF  M R + V P SVT+V V+SACAKL+D
Sbjct: 192 FDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLED 251

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           L+ G++ + +++   I  N ++ +AL DMY  C                           
Sbjct: 252 LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC--------------------------- 284

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
                 +D+A++ FD+    +  L  AM   Y+R    REAL +F  M  S +RPD  ++
Sbjct: 285 ----NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISM 340

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           +S +++C+ L  +  G+    Y+ +N  ++   + NALIDMY KC   + A R+F  M  
Sbjct: 341 LSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSN 400

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           K   TW +++ G   NG  D + + F  M   +I    V++  ++S      + +E  E 
Sbjct: 401 KTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEV 456

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
           F  M  Q G+  +      M+ +    GHL  AL++ K
Sbjct: 457 FCSMQSQEGVNADGV---TMMSIASACGHLG-ALDLAK 490


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 287/685 (41%), Positives = 411/685 (60%), Gaps = 45/685 (6%)

Query: 18  PLISPIETCE---SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRK 74
           PL+  I+ C    S  + KQ+H+  +KLG  ++  V+N L+  C S   +M  AC+VF +
Sbjct: 82  PLL--IQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN-CFSVCSNMTDACRVFNE 138

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
                   WN+++ GY  I + +    IY  M      P+                    
Sbjct: 139 SSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM------PER------------------- 173

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
                         S+   N++I  + + G V  A  +FD   + D+VTW+A+ + +++ 
Sbjct: 174 --------------SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQN 219

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
           + ++E  + F  M + GV+   V  V  LSACA L  +++GK  H    +      + L+
Sbjct: 220 EMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQ 279

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           NAL  MY+ CG++  A ++F      D+ISW ++++GY+    VD A+  FD MPE+D V
Sbjct: 280 NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVV 339

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W++MI GY + + F E L LF+EMQ S  +PDE T+VS+++ACA L ALE G+WV  YI
Sbjct: 340 SWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYI 399

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            +N +  ++ +G  LIDMY KCG VE A  VF  M+ K   TW A+I+GLA+NG  + SL
Sbjct: 400 KRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSL 459

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           DMFS M +  + P+E+T++GVL AC H G+VDEG+ +F  M   H I+PN  HYGCMVDL
Sbjct: 460 DMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDL 519

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L EA E++  MPM P+   WGALLGAC+ H D+EM     ++++EL PD++  +
Sbjct: 520 LGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFH 579

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL NIYA+  +WD+  E+R M+    + K PGCSMIE NGV+HEF+AGDK+HP    I 
Sbjct: 580 VLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIE 639

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L EM   LK  GY PDI+EV LDV EE+KE  +++HSEKLA+AFGLI+  P   IRI+
Sbjct: 640 DMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIM 699

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVI 699
           KNLR+C DCH  AKL+S  + R+++
Sbjct: 700 KNLRICNDCHTAAKLISKAFCRKIV 724



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 189/444 (42%), Gaps = 66/444 (14%)

Query: 145 GFDSSVFVQNALI--STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           GF    +  + LI  ST+     +D  R IF+     +   WN M   Y +         
Sbjct: 5   GFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFT 64

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           L+  M    +   + T  L++ AC+  +     K+ H +V +     ++ + N L + ++
Sbjct: 65  LYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFS 124

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER----------- 311
            C  M  A  +F      D +SW +I+ GYI  G V+ A+  + QMPER           
Sbjct: 125 VCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVL 184

Query: 312 --------------------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
                               D V W+A+I  + +   + EA+  F  M    +  DE   
Sbjct: 185 FGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVA 244

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD------------- 398
           VS L+ACANL  + +G+ + +   K   ++ I + NALI MY KCGD             
Sbjct: 245 VSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYL 304

Query: 399 ------------------VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
                             V+ A+ +F  M  KD  +W++MI G A N   D++L +F +M
Sbjct: 305 LDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEM 364

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
             +   PDE T V V+SAC     +++G+   A +  ++G+  N      ++D+  + G 
Sbjct: 365 QMSGFKPDETTLVSVISACARLAALEQGKWVHAYIK-RNGLTINVILGTTLIDMYMKCGC 423

Query: 501 LNEALEVIKNMPMKPNSIVWGALL 524
           +  ALEV   M  K  S  W AL+
Sbjct: 424 VETALEVFYGMIEKGIS-TWNALI 446



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 146/336 (43%), Gaps = 39/336 (11%)

Query: 12  TLTQETPLISPIETCESM---HQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
            +  E   +S +  C ++   +  K IHS ++K+G  +   +QN L+ +  S+ GD+  A
Sbjct: 237 VMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALI-YMYSKCGDIMVA 295

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV----------------- 111
            K+F +     +  WN+MI GY + +   N   I+  M + DV                 
Sbjct: 296 RKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFD 355

Query: 112 --------------RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALI 157
                         +PD  T   ++    R  A+E GK +H ++ + G   +V +   LI
Sbjct: 356 ETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLI 415

Query: 158 STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
             Y  CG V+ A  +F    +  + TWNA+  G       + +  +F  M++  V P  +
Sbjct: 416 DMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEI 475

Query: 218 TIVLVLSACAKLKDLDVGKRAHRY--VKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           T + VL AC  +  +D G+  H Y  + + KI PN+     + D+    G++  A E+  
Sbjct: 476 TFMGVLGACRHMGLVDEGQH-HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 534

Query: 276 NIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
            +    DV +W A++      G  +M R+   ++ E
Sbjct: 535 RMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIE 570


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 281/724 (38%), Positives = 427/724 (58%), Gaps = 45/724 (6%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           +++NS I   S         S I++     QLKQIH++ + LGL  +  +  KL+    S
Sbjct: 12  LYTNSGIHSDSFYA------SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLI-HASS 64

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
             GD+ +A +VF  +PRP +  WN +I+GYSR +  ++ +L+Y +M  + V PD++TFP 
Sbjct: 65  SFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPH 124

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD--VSYK 178
           LLK  +    ++ G+ +H  V + GFD+ VFVQN LI+ Y  C  +  AR +F+     +
Sbjct: 125 LLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPE 184

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
             +V+W A+ S Y +  +  E  ++F  M +  V P  V +V VL+A   L+DL  G+  
Sbjct: 185 RTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSI 244

Query: 239 HRYVKE--CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
           H  V +   +I P+L++  +L  MYA CG                               
Sbjct: 245 HASVVKMGLEIEPDLLI--SLNTMYAKCG------------------------------- 271

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
           QV  A+  FD+M   + +LW AMI GY +    REA+ +F EM   ++RPD  +I S ++
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           ACA +G+LE    +  Y+ ++  ++D+F+ +ALIDM+ KCG VE A+ VF   L +D   
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W+AMIVG  ++G   +++ ++  M R  + P++VT++G+L AC H+GMV EG  +F ++ 
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF-NLM 450

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
             H I P + HY C++DLLGRAGHL++A EVIK MP++P   VWGALL AC+ HR  E+ 
Sbjct: 451 ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           E AA+Q+  +DP N   YV L N+YAA   WD   E+R  + ++G+ K  GCS +E+ G 
Sbjct: 511 EYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR 570

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKL 656
           +  F  GDKSHP+ +EI  +++ + S LK  G++ +      D+ +E+ E  +  HSE++
Sbjct: 571 LEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERI 630

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           A+A+GLIS+  G  +RI KNLR CV+CH   KL+S + DRE++VRD  RFHHFK G CSC
Sbjct: 631 AIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSC 690

Query: 717 KDYW 720
            DYW
Sbjct: 691 GDYW 694


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/694 (39%), Positives = 415/694 (59%), Gaps = 37/694 (5%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
           +  L Q++ Q I  GL     +  K +   C   GD+ YA K FR++  P + LWN +IK
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFIN-ACLHFGDVNYAHKAFREVSEPDILLWNAIIK 73

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
           GY++ +     + +Y+DM  S V P+ +TF ++LK          GK++H    K+GF S
Sbjct: 74  GYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGS 133

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           +VFVQN+L+S Y   G++  AR +FD  +   VV+W ++ SGY +     E   +F EM 
Sbjct: 134 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR 193

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC--KIVPNLILENALTDMYAACGE 266
           +  V P  + +V V++A   ++DL  GK  H  V +   +  P++++  +LT MYA    
Sbjct: 194 QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYA---- 247

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
                                       RG V++AR +F++M + + +LW AMI GY   
Sbjct: 248 ---------------------------KRGLVEVARFFFNRMEKPNLILWNAMISGYANN 280

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
               EA+ LFREM T NIR D  T+ S + A A +G+LEL  W+  YI K++ ++D FV 
Sbjct: 281 GYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVN 340

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
             LIDMY KCG +  A+ VF  +  KD   W+ MI+G  ++GHG +++ ++++M +A + 
Sbjct: 341 TGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVC 400

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P++ T++G+L+AC ++G+V EG E F  M   HGIEP+  HY C+VDLLGRAG+LN+A +
Sbjct: 401 PNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYD 459

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
            I +MP+KP   VWGALL AC++HR   + E+AA+Q+  LDP N   YV L N+YA+ + 
Sbjct: 460 FIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHL 519

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           W     +R M+  +G+ K  G S IE+NG +  F  GD+SHP++KEI+ +LD +   LK 
Sbjct: 520 WTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKA 579

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            GY+P +  V  D+  E+ E  +  HSE+LA+A+G+IS+ PG T+RI KNLR C++CH  
Sbjct: 580 AGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSA 639

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            KL+S + DRE+I+RD  RFHHFK G CSC D+W
Sbjct: 640 IKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 2/274 (0%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           +++     E + Q K IH    KLGL   P +   L T   +++G ++ A   F ++ +P
Sbjct: 207 VMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM-YAKRGLVEVARFFFNRMEKP 265

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           ++ LWN MI GY+     +  + ++ +M+  ++R D+ T    +    +  ++E  + L 
Sbjct: 266 NLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLD 325

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
            ++ K  +    FV   LI  Y  CG + +AR +FD     DVV W+ M  GY       
Sbjct: 326 GYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQ 385

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E   L+ EM++ GV P   T + +L+AC     +  G      + +  I P+    + + 
Sbjct: 386 EAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVV 445

Query: 259 DMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTG 291
           D+    G +  A +   ++  K  +S W A+++ 
Sbjct: 446 DLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSA 479


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/692 (40%), Positives = 414/692 (59%), Gaps = 37/692 (5%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
            L Q++ Q I  GL     +  K +   C   GD+ YA K FR++  P + LWN +IKGY
Sbjct: 2   HLDQVYVQLIVSGLHKCRFLMIKFIN-ACLHFGDVNYAHKAFREVSEPDILLWNAIIKGY 60

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           ++ +     + +Y+DM  S V P+ +TF ++LK          GK++H    K+GF S+V
Sbjct: 61  TQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNV 120

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
           FVQN+L+S Y   G++  AR +FD  +   VV+W ++ SGY +     E   +F EM + 
Sbjct: 121 FVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQC 180

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC--KIVPNLILENALTDMYAACGEMG 268
            V P  + +V V++A   ++DL  GK  H  V +   +  P++++  +LT MYA      
Sbjct: 181 NVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYA------ 232

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
                                     RG V++AR +F++M + + +LW AMI GY     
Sbjct: 233 -------------------------KRGLVEVARFFFNRMEKPNLILWNAMISGYANNGY 267

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             EA+ LFREM T NIR D  T+ S + A A +G+LEL  W+  YI K++ ++D FV   
Sbjct: 268 GEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTG 327

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDMY KCG +  A+ VF  +  KD   W+ MI+G  ++GHG +++ ++++M +A + P+
Sbjct: 328 LIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPN 387

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
           + T++G+L+AC ++G+V EG E F  M   HGIEP+  HY C+VDLLGRAG+LN+A + I
Sbjct: 388 DGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFI 446

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
            +MP+KP   VWGALL AC++HR   + E+AA+Q+  LDP N   YV L N+YA+ + W 
Sbjct: 447 MSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWT 506

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
               +R M+  +G+ K  G S IE+NG +  F  GD+SHP++KEI+ +LD +   LK  G
Sbjct: 507 RVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAG 566

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           Y+P +  V  D+  E+ E  +  HSE+LA+A+G+IS+ PG T+RI KNLR C++CH   K
Sbjct: 567 YVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIK 626

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           L+S + DRE+I+RD  RFHHFK G CSC D+W
Sbjct: 627 LISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 2/274 (0%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           +++     E + Q K IH    KLGL   P +   L T   +++G ++ A   F ++ +P
Sbjct: 192 VMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM-YAKRGLVEVARFFFNRMEKP 250

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           ++ LWN MI GY+     +  + ++ +M+  ++R D+ T    +    +  ++E  + L 
Sbjct: 251 NLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLD 310

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
            ++ K  +    FV   LI  Y  CG + +AR +FD     DVV W+ M  GY       
Sbjct: 311 GYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQ 370

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E   L+ EM++ GV P   T + +L+AC     +  G      + +  I P+    + + 
Sbjct: 371 EAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVV 430

Query: 259 DMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTG 291
           D+    G +  A +   ++  K  +S W A+++ 
Sbjct: 431 DLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSA 464


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 296/741 (39%), Positives = 434/741 (58%), Gaps = 43/741 (5%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTN-PTVQNKL--VTFCCSEKGDMKYACKVFRKIPR 77
           SP  T  S+ Q  Q+H+     G + + P+ ++ L  +T   S    ++Y   +F ++P 
Sbjct: 4   SPWPTPRSVRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPH 63

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVE--FG 134
            +  L++T ++   +  +  +  ++ L  ++S  VR   +TF F+ +             
Sbjct: 64  STTFLFDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLC 123

Query: 135 KELHCHVLKFGFDSSV-FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
             LH   L+    S+   V N LI  Y   G  D AR  FD     D V W  +  G  R
Sbjct: 124 LMLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVR 183

Query: 194 VKQFDETRKL-------------------------------FGEMERKGVLPTSVTIVLV 222
               DE R+L                               F  M   GV P  V ++  
Sbjct: 184 WGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGA 243

Query: 223 LSACAKLKDLDVGKRAHRYV--KECKIVPNLILENALTDMYAACGEMGFALEIFGNI-KN 279
           LSAC+KLK+LD+G+  H  V  K  ++  NL++  AL DMYA CG++  A  +F  + + 
Sbjct: 244 LSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVV--ALIDMYAKCGDIAQAQAVFDAVGRG 301

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           +    W AI+ GY   G VD+AR  FDQM  RD + + +MI GY+   R R+AL LF +M
Sbjct: 302 QKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQM 361

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
           +   +R D FT+VS+LTACA+LGAL  G  +   I++  V+ D+++G AL+DMY KCG V
Sbjct: 362 RRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRV 421

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           ++A  VF  M  +D  TWTAMI GLA NG G  +L+ F QM R    P  VTY+ VL+AC
Sbjct: 422 DEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTAC 481

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H+ ++DEGR +F +M   H + P   HYGCM+DLL R+G L+EA+ +++ MPM+PN+++
Sbjct: 482 SHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVI 541

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           WG++L ACRVH++ ++A  AA+ +L+L P+ +AVYV L NIY    +W + + +R ++ +
Sbjct: 542 WGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEE 601

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
           RG+KKT G S I + G VH+FVA D+SHP T EI   ++E+   LK VGY P  S + +D
Sbjct: 602 RGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVD 661

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           V EE+KE+A+  HSEK+A+AFGLIS  P + I IVKNLR+C DCH   KLVS +++RE+I
Sbjct: 662 VDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREII 721

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           VRD++RFHHF+ G+CSC D+W
Sbjct: 722 VRDRSRFHHFRDGACSCNDFW 742


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  547 bits (1409), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/654 (41%), Positives = 389/654 (59%), Gaps = 54/654 (8%)

Query: 90  YSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
           +S  +SH    L  Y  M K D+  D++  P +LK  ++      GKE+H   +K G  S
Sbjct: 83  FSPFESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVS 142

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN----------------------A 186
            VFV NAL+  Y  CG +  AR +FD   + DVV+W+                      A
Sbjct: 143 DVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTA 202

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M +GY R    +E  +LF  M  + V P  +T++ ++ +C  +  + +GKR H Y+    
Sbjct: 203 MIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNG 262

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              +L L  AL DMY  CGE                               +  AR  FD
Sbjct: 263 FGMSLALATALVDMYGKCGE-------------------------------IRSARAIFD 291

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
            M  +D + WTAMI  Y + N    A  LF +M+ + +RP+E T+VS+L+ CA  GAL++
Sbjct: 292 SMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDM 351

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+W   YIDK  V+ D+ +  ALIDMY KCGD+  AQR+F E + +D  TW  M+ G  +
Sbjct: 352 GKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGM 411

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G+G+K+L +F++M    + P+++T++G L AC+H G+V EG+  F  M    G+ P   
Sbjct: 412 HGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVE 471

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HYGCMVDLLGRAG L+EA ++I++MP+ PN  +WGA+L AC++H+++ M E+AA+++L L
Sbjct: 472 HYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLAL 531

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           +P N    VL+ NIYAA NRW++   +R+ + D GIKK PG S IE+NG+VH+F  GD +
Sbjct: 532 EPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTA 591

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           HP  ++I   L EM+  LK  GY+PD S V  ++ EE+KE A+  HSEKLAMAFGLIS+ 
Sbjct: 592 HPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTA 651

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           PG  IR+VKNLR+C DCH + KL+S +Y R +IVRD+ RFHHF+ GSCSC  YW
Sbjct: 652 PGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 202/424 (47%), Gaps = 58/424 (13%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK---- 88
           K+IH  ++K GL+++  V N L+    SE G +  A  +F K+    V  W+TMI+    
Sbjct: 129 KEIHGFSVKNGLVSDVFVVNALMQMY-SECGSLVSARLLFDKMSERDVVSWSTMIRAYIT 187

Query: 89  ------------------GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
                             GY R +  + G  +++ M++ +V P++ T   L+       A
Sbjct: 188 LFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGA 247

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           V+ GK LH ++L+ GF  S+ +  AL+  Y  CGE+  AR IFD     DV+TW AM S 
Sbjct: 248 VQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISA 307

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y +    D   +LF +M   GV P  +T+V +LS CA    LD+GK  H Y+ +  +  +
Sbjct: 308 YAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVD 367

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           +IL+ AL DMYA CG++  A  +F    ++D+ +W  ++ GY   G  +           
Sbjct: 368 VILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGE----------- 416

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
                               +AL LF EM+T  ++P++ T +  L AC++ G +  G+ +
Sbjct: 417 --------------------KALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGL 456

Query: 371 --KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
             K   D   V      G  ++D+  + G +++A ++   M +  +   W AM+    I+
Sbjct: 457 FEKMIHDFGLVPKVEHYG-CMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIH 515

Query: 428 GHGD 431
            + +
Sbjct: 516 KNSN 519



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 146/320 (45%), Gaps = 6/320 (1%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K++H+  ++ G   +  +   LV     + G+++ A  +F  +    V  W  MI  Y++
Sbjct: 252 KRLHAYILRNGFGMSLALATALVDMY-GKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQ 310

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            +       +++ M  + VRP+  T   LL     + A++ GK  H ++ K G +  V +
Sbjct: 311 ANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVIL 370

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
           + ALI  Y  CG++  A+ +F  +   D+ TWN M +GY      ++  KLF EME  GV
Sbjct: 371 KTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGV 430

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
            P  +T +  L AC+    +  GK    + + +  +VP +     + D+    G +  A 
Sbjct: 431 KPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAY 490

Query: 272 EIFGNIK-NKDVISWTAIVTG---YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
           ++  ++    ++  W A++     + N    ++A +    +  ++      M + Y   N
Sbjct: 491 KMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAAN 550

Query: 328 RFREALTLFREMQTSNIRPD 347
           R+ +   + + ++ + I+ +
Sbjct: 551 RWNDVAGMRKAVKDTGIKKE 570


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 291/727 (40%), Positives = 440/727 (60%), Gaps = 45/727 (6%)

Query: 21  SPIETCESMHQLKQIHSQTIKLG--LLTNPTVQ---NKLVTFCCSEKGDMKYACKVFRKI 75
           +P  T  ++ Q  ++H++    G  LL  P+ +   N LV         ++YA  +F ++
Sbjct: 4   APWPTPRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRM 63

Query: 76  PRPSVCLWNTMIKGYSRI--DSHKNGVLIYLDMLKSDVRPDNYTFPFLLK---GFTRDIA 130
           P PS  L++T ++  SR   D H+   L++  M ++ VRPD +TF FL K     +R  +
Sbjct: 64  P-PSTFLFDTALRACSRAGSDPHRP-FLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHS 121

Query: 131 VEFGKELHCHVLKFGFDSSV-FVQNALISTYCLCGEVDMARGIFD-VSYKD--------- 179
           +     LH   L+    S+  FV N+LI  Y   G    AR  FD +  KD         
Sbjct: 122 LLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLIS 181

Query: 180 ---------------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
                                DV++W ++ + Y R  +  E    F  M   G+ P  VT
Sbjct: 182 GLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVT 241

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI- 277
           ++ VLSACAKLKDL++G+  H  V+E  +  +  L  AL DMYA CG+ G A ++F  + 
Sbjct: 242 VIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALG 301

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
           +     SW AI+ GY   G VD+AR  FD+M  RD + + +M+ GY+   + REAL LF 
Sbjct: 302 RGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFM 361

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
            M+  ++R D FT+V++LTACA+LGAL+ G  +   I++  V+ DI++G AL+DMY KCG
Sbjct: 362 SMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCG 421

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            V++A  VF+ M ++D  TWTAMI GLA NG G  +L+ F QM      P+ V+Y+ VL+
Sbjct: 422 RVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLT 481

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           AC+H+ +++EGR YF +M I + I P   HYGCM+DLLGR+G L+EA++++K MP++PN+
Sbjct: 482 ACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNA 541

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
           ++W ++L ACRVH+  ++A+ AA+ +L+L+PD + VYV L NIY    +W+N  ++R ++
Sbjct: 542 VIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLM 601

Query: 578 LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF 637
            +R +KKT G S I + G VH+FV  DKSHP+  EI   L+E++  LK +GY P  S++ 
Sbjct: 602 EERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQIT 661

Query: 638 LDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDRE 697
           +DV EE+KE+A+  HSEKLA+AFGLI+  P + + I KNLR+C DCH   KL+S +++RE
Sbjct: 662 VDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNRE 721

Query: 698 VIVRDKT 704
           +IVRD++
Sbjct: 722 IIVRDRS 728


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 261/620 (42%), Positives = 401/620 (64%), Gaps = 7/620 (1%)

Query: 2   FSNSSISPPSTLTQET-----PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT 56
           FS    +P S  T  T     PL+S +E C+S  QLKQI +Q I  GL+ +    ++L++
Sbjct: 34  FSTHKSNPTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLIS 93

Query: 57  FCC-SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPD 114
           FC  SE  ++ Y  K+   +  P+V  WN +I+G    ++ + G+++Y  ML ++  RPD
Sbjct: 94  FCAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPD 153

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174
           NYT+ FL K     +    G E+   VLK GFD  +++ N +I      GE  +A  +FD
Sbjct: 154 NYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFD 213

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
                D+V+WN++ +GY R +Q  E   ++ +M  + V P  VT++ V+SACA+L+ L +
Sbjct: 214 EGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKL 273

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G+  HRY++E  +   + L NAL DMY  CG++     +F N++ K V+SWT ++ GY  
Sbjct: 274 GREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAK 333

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G +DMA + F  MPE++ V W AMI   ++ N   EAL LFREMQ SN++PD+ T++  
Sbjct: 334 NGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHC 393

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           L+AC+ LGAL+ G W   YI K+ +  D+ +G ALIDMY KCG++ KA +VF EM R++ 
Sbjct: 394 LSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNS 453

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            TWTA+I GLA+ G+ + ++  FS+M+ + ++PDE+T++GVL+AC H G+V+EGR+YF  
Sbjct: 454 LTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQ 513

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           M  +  + P   HY CMV+LLGRAG L EA E+IK MPM+ +++VWGAL  AC +HR+  
Sbjct: 514 MKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLL 573

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           + E AA ++L+LDP +  +YVLL N+Y    +W+  + +R+M+++RG++KTPG S IE+N
Sbjct: 574 IGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVN 633

Query: 595 GVVHEFVAGDKSHPQTKEIY 614
           G+++EF+  DKSHPQ+++IY
Sbjct: 634 GIINEFIVRDKSHPQSEQIY 653


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/721 (39%), Positives = 410/721 (56%), Gaps = 74/721 (10%)

Query: 2   FSNSSISPPSTLTQETPL-ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT-FCC 59
           FS     P S L Q+T L +   ++  S+  L Q+H   ++ G   +  V   L+  +  
Sbjct: 18  FSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYAN 77

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
               +  +A KVF  IP P+V +WN +IKG    +     +  Y  M+  D RP+ +T+P
Sbjct: 78  PHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYP 136

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            L K  +   AV+ G+++H HV+K G  S V +++A I  Y   G ++ AR +F  S + 
Sbjct: 137 TLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMF-YSGES 195

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           DVV WN M  GY +    +  + LF +M                                
Sbjct: 196 DVVCWNTMIDGYLKCGVLEAAKGLFAQMP------------------------------- 224

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
                   V N+   N + +  A  G +G A ++F  +  +D ISW+++V GYI+ G+  
Sbjct: 225 --------VKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYK 276

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
            A + F Q                               MQ    RP  F + S+L AC+
Sbjct: 277 EALEIFQQ-------------------------------MQREETRPGRFILSSVLAACS 305

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
           N+GA++ G WV  Y+ +N +K D  +G AL+DMY KCG ++    VF EM  ++ FTW A
Sbjct: 306 NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNA 365

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           MI GLAI+G  + +L++FS++    + P+ +T VGVL+AC H G VD+G   F  M   +
Sbjct: 366 MIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY 425

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           G++P   HYGCMVDLLGR+G  +EA ++I +MPMKPN+ VWGALLGACR+H + ++AE  
Sbjct: 426 GVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERV 485

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
            K +LEL+P N   YVLL NIYA   R+D+  ++R+++ DRGIK  PG S++++NG VHE
Sbjct: 486 GKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHE 545

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA 659
           F  GD SHPQ KEIY KL  +   L+  G+ PD S+V  D+ EE+KE AV  HSEKLA+A
Sbjct: 546 FKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIA 605

Query: 660 FGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
           FGLI++ PG  I IVKNLR+C DCH   KL+S ++DRE+IVRD+ R+HHFK+G+CSCKD+
Sbjct: 606 FGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDF 665

Query: 720 W 720
           W
Sbjct: 666 W 666


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/620 (42%), Positives = 388/620 (62%), Gaps = 35/620 (5%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVD---MARGIFDVSYKDDVVTWNAMFSGYK 192
           ++H  ++K   D + FV   L+     C   +    AR +FD     D   WN M   Y 
Sbjct: 21  QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYL 80

Query: 193 RVKQFDETRKLFGEMERKGVLPT-SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
             +   E+  LF +M  +  +P  S ++ LV+ AC +LKD   G++ H  V +  +  +L
Sbjct: 81  NSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDL 140

Query: 252 ILENALTDMYAA-------------------------------CGEMGFALEIFGNIKNK 280
            +E AL +MYA                                 GE+  A ++F  +  +
Sbjct: 141 FVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPER 200

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           D++SW  ++ G+ + G V  A++ FD+  ERD + W++MI  Y +  +  EAL LF EMQ
Sbjct: 201 DLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQ 260

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
            +N+ PD+ T+VS+L+AC ++GAL +G+ +   I++N+++ D+ +G +L+DMY KCGD++
Sbjct: 261 LANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDID 320

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
            + RVF  M  +D F W+AMI+GLA +G G+ +LD FS+M+   I P++VT++GVLSAC+
Sbjct: 321 NSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACS 380

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           H G+VDEG  YF  M+  + + P   HYGC+VD+LGRAG L EA+E+IK+MP  P++IVW
Sbjct: 381 HIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVW 440

Query: 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
            ALLGACR++++ E+AE A   +LEL+P  +  YVLL NIY+    WD    +R+M+ + 
Sbjct: 441 RALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNI 500

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
            I+K PG S IE++  VHEFVAGD+SHP++K+I   L E+T+ LK  GY P  + V  D 
Sbjct: 501 NIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDF 560

Query: 641 GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIV 700
            E++KE A+  HSEKLA+AFGL+S+ PG TIRIVKNLR+C DCH   KL+S  Y R +IV
Sbjct: 561 DEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIV 620

Query: 701 RDKTRFHHFKHGSCSCKDYW 720
           RD+ RFHHF +GSCSCKDYW
Sbjct: 621 RDRNRFHHFVNGSCSCKDYW 640



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 211/470 (44%), Gaps = 98/470 (20%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV--TFCCSEKGDMKYACKVFRKIP 76
           ++S ++    ++Q+ QIH+  IK  L  N  V  KL+   F CS   D+ YA  VF +IP
Sbjct: 6   VMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIP 65

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP-DNYTFPFLLKGFTRDIAVEFGK 135
            P   +WNTMI+ Y    + +  + ++  M   +  P D+Y+   +++   R      G+
Sbjct: 66  SPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQ 125

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------VSY----------- 177
           +LH  VLK G  S +FV+ ALI  Y   G++++AR I D       V Y           
Sbjct: 126 KLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVG 185

Query: 178 -------------KDDVVTWNAMFSG-------------------------------YKR 193
                        + D+V+WN M  G                               Y +
Sbjct: 186 EINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAK 245

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
            +Q +E  +LF EM+   VLP  VT+V VLSAC  +  L +GK  H  ++  +I  +L L
Sbjct: 246 ARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKL 305

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             +L DMYA CG++  +L +F  + N+DV +W+A++ G  N G  ++A  +F +M   D 
Sbjct: 306 GTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISED- 364

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
                                         I+P++ T + +L+AC+++G ++ G    T 
Sbjct: 365 ------------------------------IKPNDVTFIGVLSACSHIGLVDEGWTYFTS 394

Query: 374 IDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
           + K   V   I     ++D+  + G +++A  + + M    D   W A++
Sbjct: 395 MSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALL 444


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 271/690 (39%), Positives = 396/690 (57%), Gaps = 34/690 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +++H   +K G   +  V N L+    SE G +  A  +F KI    V  W+TMI+ Y R
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALIMMY-SEVGSLALARLLFDKIENKDVVSWSTMIRSYDR 202

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG--FDSSV 150
                  + +  DM    V+P       +         ++ GK +H +V++ G    S V
Sbjct: 203 SGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGV 262

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            +  ALI  Y  C  +  AR +FD   K  +++W AM + Y      +E  +LF +M  +
Sbjct: 263 PLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGE 322

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G+ P  +T++ ++  C     L++GK  H +        +L+L  A  DMY  CG+    
Sbjct: 323 GMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGD---- 378

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
                                      V  AR  FD    +D ++W+AMI  Y + N   
Sbjct: 379 ---------------------------VRSARSVFDSFKSKDLMMWSAMISSYAQNNCID 411

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           EA  +F  M    IRP+E T+VS+L  CA  G+LE+G+W+ +YIDK  +K D+ +  + +
Sbjct: 412 EAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFV 471

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMY  CGD++ A R+F E   +D   W AMI G A++GHG+ +L++F +M    + P+++
Sbjct: 472 DMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDI 531

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T++G L AC+H+G++ EG+  F  M  + G  P   HYGCMVDLLGRAG L+EA E+IK+
Sbjct: 532 TFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKS 591

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MPM+PN  V+G+ L AC++H++ ++ E AAKQ L L+P      VL+ NIYA+ NRW + 
Sbjct: 592 MPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDV 651

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
             +R+ + D GI K PG S IE+NG++HEF+ GD+ HP  K++Y  +DEM   L+  GY 
Sbjct: 652 AYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYT 711

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           PD+S V  ++ +E K  A+  HSEKLAMA+GLIS+ PGV IRIVKNLR+C DCH   KL+
Sbjct: 712 PDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLL 771

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S +Y RE+IVRD+ RFHHFK GSCSC DYW
Sbjct: 772 SKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 161/353 (45%), Gaps = 35/353 (9%)

Query: 176 SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
           SY  +    + + + Y +     +  K++  M        +  I  VL AC  +    +G
Sbjct: 84  SYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLG 143

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           +  H +V +     ++ + NAL  MY+  G +  A  +F  I+NKDV+SW+ ++  Y   
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRS 203

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G +D                               EAL L R+M    ++P E  ++SI 
Sbjct: 204 GLLD-------------------------------EALDLLRDMHVMRVKPSEIGMISIT 232

Query: 356 TACANLGALELGEWVKTYIDKNKV--KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
              A L  L+LG+ +  Y+ +N    K+ + +  ALIDMY KC ++  A+RVF  + +  
Sbjct: 233 HVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKAS 292

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +WTAMI       + ++ + +F +ML   + P+E+T + ++  C   G ++ G+   A
Sbjct: 293 IISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHA 352

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
             T+++G   +       +D+ G+ G +  A  V  +   K + ++W A++ +
Sbjct: 353 -FTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSK-DLMMWSAMISS 403


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/707 (39%), Positives = 402/707 (56%), Gaps = 95/707 (13%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIP 76
           P +S I+ C    QLKQIH+Q ++ GL  +P   ++L+T    S    + YA +VF +IP
Sbjct: 37  PTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIP 96

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
            P++  WNT+I+ Y+   +    +LI+L ML +S   PD +TFPFL+K  +    +  GK
Sbjct: 97  HPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGK 156

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
             H  V+K    S VF+ N+LI  Y  CGE+ +   +F    + DVV+WN+M + + +  
Sbjct: 157 AFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGG 216

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
             +E  +LF EME +                                       +L L N
Sbjct: 217 CPEEALELFQEMETQN--------------------------------------SLTLSN 238

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           A+ DMY  CG +  A  +F  +  KD++SWT ++ GY   G+ D A+  FD MP +D   
Sbjct: 239 AMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAA 298

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNI-RPDEFTIVSILTACANLGALELGEWVKTYI 374
           W A+I  Y +  + +EAL LF E+Q S   +PDE T+                       
Sbjct: 299 WNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTL----------------------- 335

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K  +K +  +  +LIDMYCKCGD++KA  VF  + RKD F W+AMI GLA++GHG  ++
Sbjct: 336 -KQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAI 394

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            +FS+M    + P+ VT+  +L AC+H G+V+EGR +F  M + +G              
Sbjct: 395 ALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYG-------------- 440

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
                           MPM P + VWGALLGAC +H +  +AE A  Q++EL+P N   Y
Sbjct: 441 ---------------KMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAY 485

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL NIYA   +WD    LR+++ D G+KK PGCS IE++G+VHEF+ GD SHP  K+IY
Sbjct: 486 VLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIY 545

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHSEKLAMAFGLISSGPGVTIRI 673
            KLDE+ + L+ +GY+P+ S +   V EED KE+A++ HSEKLA+AFGLIS+G    IRI
Sbjct: 546 AKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRI 605

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           VKNLR+C DCH +AKLVS +YDRE+++RD+ RFHHF+ G CSC DYW
Sbjct: 606 VKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 652


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/724 (38%), Positives = 425/724 (58%), Gaps = 45/724 (6%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           +++NS I   S         S I++     QL+QIH++ + LGL  +  +  KL+    S
Sbjct: 12  LYTNSGIHSDSFYA------SLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLI-HASS 64

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
             GD+ +A +VF  +PRP V  WN +I+GYSR +  ++ +L+Y  M  + V PD++TFP 
Sbjct: 65  SYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPH 124

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD--VSYK 178
           LLK       ++ G+ +H  V + GF++ VFVQN LI+ Y  C  +  AR +F+     +
Sbjct: 125 LLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPE 184

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
             +V+W A+ S Y +  +  E  ++F +M +  V P  V +V VL+A   L+DL+ G+  
Sbjct: 185 RTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSI 244

Query: 239 HRYVKE--CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
           H  V +   +  P+L++  +L  MYA CG                               
Sbjct: 245 HASVMKMGLETEPDLLI--SLNTMYAKCG------------------------------- 271

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
           QV  A+  FD+M   + +LW AMI GY +    ++A+ LF EM   ++RPD  +I S ++
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAIS 331

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           ACA +G+LE   W+  Y+ ++  ++D+F+ +ALIDM+ KCG VE A+ VF   L +D   
Sbjct: 332 ACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVV 391

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W+AMIVG  ++G   +++ ++  M R  + P++VT++G+L AC H+GMV EG  +F  M 
Sbjct: 392 WSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMA 451

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
             H I P + HY C++DLLGRAGHL++A EVIK MP++P   VWGALL AC+ HR  E+ 
Sbjct: 452 -DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           + AA+Q+  +DP N   YV L N+YAA   WD   E+R  + ++G+ K  GCS +E+ G 
Sbjct: 511 KYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR 570

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKL 656
           +  F  GDKSHP+ +EI  +++ + S LK  G++ +      D+ +E+ E  +  HSE++
Sbjct: 571 LEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERI 630

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
            +A+GLIS+  G T+RI KNLR CV+CH   KL+S +  RE++VRD  RFHHFK G CSC
Sbjct: 631 TIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSC 690

Query: 717 KDYW 720
            DYW
Sbjct: 691 GDYW 694


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 268/607 (44%), Positives = 380/607 (62%), Gaps = 10/607 (1%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           L +GF    +++  K +H  +L+ G D   ++ N ++      G  + +  IF  + + +
Sbjct: 16  LFQGFN---SLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPN 72

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           +  +N M  G      F E+ +++  M ++G+ P S T   +L ACA+L D  +G + H 
Sbjct: 73  IFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHG 132

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ--- 297
            V +     +  +  +L  +Y  CG +  A ++F +I  K+V +WTAI++GYI  G+   
Sbjct: 133 LVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCRE 192

Query: 298 -VDMARQ---YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
            +DM R+    FD M E+D V W++MI GY      +EAL LF +M     RPD + +V 
Sbjct: 193 AIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVG 252

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L ACA LGALELG W    +D+N+   +  +G ALIDMY KCG ++ A  VFR M +KD
Sbjct: 253 VLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKD 312

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
              W A I GLA++GH   +  +F QM ++ I PD  T+VG+L ACTH G+VDEGR+YF 
Sbjct: 313 IVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFN 372

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
            M     + P   HYGCMVDLLGRAG L+EA +++K+MPM+ N+IVWGALLG CR+HRD 
Sbjct: 373 SMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDT 432

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           ++ E   KQ++ L+P N   YVLL NIY+A ++W++  ++R ++ +RGIKK PG S IE+
Sbjct: 433 QLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEV 492

Query: 594 NGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHS 653
           +GVVHEF+ GD SHP +++IY KL E+  DLK  GY+P    V  D+ EE+KE  +  HS
Sbjct: 493 DGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHS 552

Query: 654 EKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
           EKLA+AFGLIS+ P   IR+VKNLR+C DCH   K +S    RE+IVRD  RFH F  GS
Sbjct: 553 EKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGS 612

Query: 714 CSCKDYW 720
           CSCKDYW
Sbjct: 613 CSCKDYW 619



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 202/436 (46%), Gaps = 72/436 (16%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S+  LK +H+  ++LGL  +  + NK++ F  +  G+  Y+ ++F +   P++ L+NTMI
Sbjct: 22  SLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFN-FGNTNYSHRIFHQTKEPNIFLFNTMI 80

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
            G    DS +  + IY  M K  + PD++TFPFLLK   R +  + G +LH  V+K G +
Sbjct: 81  HGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCE 140

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ----------- 196
           S  FV  +L+S Y  CG +D A  +FD   + +V  W A+ SGY  V +           
Sbjct: 141 SDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRA 200

Query: 197 ---FD------------------------ETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229
              FD                        E   LF +M  +G  P    +V VL ACA+L
Sbjct: 201 CSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARL 260

Query: 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289
             L++G  A   +   + + N +L  AL DMYA CG M  A E+F  ++ KD++ W A +
Sbjct: 261 GALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAI 320

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
           +G    G V                               + A  LF +M+ S I PD  
Sbjct: 321 SGLAMSGHV-------------------------------KAAFGLFGQMEKSGIEPDGN 349

Query: 350 TIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
           T V +L AC + G ++ G      +++   +  +I     ++D+  + G +++A ++ + 
Sbjct: 350 TFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKS 409

Query: 409 M-LRKDKFTWTAMIVG 423
           M +  +   W A++ G
Sbjct: 410 MPMEANAIVWGALLGG 425


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 274/696 (39%), Positives = 414/696 (59%), Gaps = 35/696 (5%)

Query: 27  ESMHQ--LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWN 84
           +S+H+  L QI+++ +  GL     +  KLV    S  G++  A K+F K P P V LWN
Sbjct: 84  DSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVN-KASNIGEVSCARKLFDKFPDPDVFLWN 142

Query: 85  TMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF 144
            +++ YSR     + + +Y  M  + V PD ++FP +LK  +   A+E G+ +H  + + 
Sbjct: 143 AIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRH 202

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           GF+S VFVQN L++ Y  CGE+  A  +F       +V+W ++ SGY +  Q  E  ++F
Sbjct: 203 GFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIF 262

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
            EM +  V P  + +V VL A   ++DL+ GK  H  V +  +     L  +LT +YA C
Sbjct: 263 SEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKC 322

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
           G                                V +AR +F+Q+     + W AMI GY+
Sbjct: 323 G-------------------------------HVMVARLFFNQVENPSLIFWNAMISGYV 351

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
           +     EA+ LFR M++ NIRPD  T+ S + ACA +G+LEL  W+  YI  ++ +ND+ 
Sbjct: 352 KNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVI 411

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           V  +LID Y KCG V+ A+ VF  +  KD   W+AM+VG  ++G G +S+ +F  M +A 
Sbjct: 412 VNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAG 471

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           + P++VT+VG+L+AC ++G+V+EG + F  M   +GIEP   HY C+VDLLGRAGHL+ A
Sbjct: 472 VSPNDVTFVGLLTACKNSGLVEEGWDLFHRMR-DYGIEPRHQHYACVVDLLGRAGHLDRA 530

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
              + NMP++P   VWGALL AC++HR   + E AA+++  LDP N   YV L N+YA+ 
Sbjct: 531 YNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASS 590

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
             WD   ++R ++ ++G+ K  G S+IE+NG +  F AGDK+HP++KEI+ +++++   L
Sbjct: 591 CLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRL 650

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           K  G++P    V  D+  E+ E  +  HSE+LA+A+GLIS+ PG T+RI KNLR C +CH
Sbjct: 651 KEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCH 710

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              KL+S +  RE++VRD  RFHHFK G+CSC DYW
Sbjct: 711 AAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/716 (38%), Positives = 417/716 (58%), Gaps = 32/716 (4%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           S ++ PS+ ++   + + I    + + LKQ+H   I   L  +  + N L+      +  
Sbjct: 2   SIVTVPSSTSKVQQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFR-Q 60

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
             Y+  +F     P++ L+NT+I G+         + ++L + K  +    +TFP +LK 
Sbjct: 61  THYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKA 120

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
            TR    + G +LH  V+K GF+  V    +L+S Y   G ++ A  +F+   +  VVTW
Sbjct: 121 CTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTW 180

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
            A+FSGY    +  E   LF +M   GV P S  IV VLSAC  + DLD G+   ++++E
Sbjct: 181 TALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEE 240

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
            ++  N  +   L ++YA CG+M                               + AR  
Sbjct: 241 MEMQKNSFVRTTLVNLYAKCGKM-------------------------------EKARSV 269

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           FD M E+D V W+ MI GY   +  +E +  F +M   N++PD+F+IV  L++CA+LGAL
Sbjct: 270 FDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGAL 329

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           +LGEW  + ID+++   ++F+ NALIDMY KCG + +   VF+EM  KD     A I GL
Sbjct: 330 DLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGL 389

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A NGH   S  +F Q  +  I PD  T++G+L  C H G++ +G  +F  ++  + ++  
Sbjct: 390 AKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRT 449

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGCMVDL GRAG L++A  +I +MPM+PN+IVWGALL  CR+ +D ++AE   K+++
Sbjct: 450 VEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELI 509

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
            L+P N   YV L NIY+   RWD   E+R M+  +G+KK PG S IE+ G VHEF+A D
Sbjct: 510 ALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADD 569

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           KSHP + +IY KL+++ ++++ +G++P    VF DV +E+KER +  HSEKLA+AFGLIS
Sbjct: 570 KSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLIS 629

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  G  IR+VKNLR+C DCH + KL+S +  RE++VRD  RFH F +GSCSC DYW
Sbjct: 630 TDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 276/725 (38%), Positives = 424/725 (58%), Gaps = 58/725 (8%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTI-------KLGLLTNPTVQNKLVT 56
           N   +PPS       ++S    C+++  LKQ+H+Q I       +L  L + +  +   T
Sbjct: 88  NPLTNPPSN----PQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFPT 143

Query: 57  FCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
           F       + YA  +F  +  P   L+N++I+  S   +    + +Y  ML+S ++PD+ 
Sbjct: 144 F-------LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHM 196

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           T+PF++K         FG  +H HV+K GF+   ++ ++LI  Y    ++  A+ +F++ 
Sbjct: 197 TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLC 256

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
              DVV+WNAM  GY +  +    R +F  M                             
Sbjct: 257 SARDVVSWNAMIDGYVKHVEMGHARMVFDRM----------------------------- 287

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
                     +  ++I  N + + YA  G++  A  +F  +  ++++SW +++ G++  G
Sbjct: 288 ----------VCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCG 337

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
            V+ A   F +MP RD V W +M+  Y +  +  EAL LF +M+   ++P E T+VS+L+
Sbjct: 338 NVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLS 397

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           ACA+LGAL+ G  + TYI+ N+++ +  VG AL+DMY KCG +  A +VF  M  KD   
Sbjct: 398 ACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLA 457

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W  +I G+AI+G+  ++  +F +M  A + P+++T+V +LSAC+H GMVDEG++    M+
Sbjct: 458 WNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMS 517

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
             +GIEP   HYGC++DLL RAG L EA+E+I  MPM+PN    GALLG CR+H + E+ 
Sbjct: 518 SSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELG 577

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           EM  K+++ L P +   Y+LL NIYAA  +WD+ R++R ++   GI K PG S+IE+ G+
Sbjct: 578 EMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGM 637

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLK-FVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
           VH FVAGD SHP++ +IY KL+E+ + LK  +GY  D   V LD+ EEDKE A+  HSEK
Sbjct: 638 VHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEK 697

Query: 656 LAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715
           LA+A+GL+       IRIVKNLR+C DCH + KL+S VY RE+IVRD+ RFHHF+ G CS
Sbjct: 698 LAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECS 757

Query: 716 CKDYW 720
           C D+W
Sbjct: 758 CLDFW 762


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/593 (45%), Positives = 376/593 (63%), Gaps = 7/593 (1%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLC--GEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K+ H H++  G        N L+        G +  A  +FD   K DV  +N M   + 
Sbjct: 32  KQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHA 91

Query: 193 RVKQFDE-TRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
            +      + ++F  M R  G LP   T V V  AC     +  G++   +  +  +  N
Sbjct: 92  VIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESN 151

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           L + NA+  MYA  G +  A  +F    ++D+ SW  ++ GY+  G++  A++ FD+M E
Sbjct: 152 LFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSE 211

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           RD V WT +I GY++V  F+EAL LF EM  +   P+EFT+ S L ACANL AL+ G W+
Sbjct: 212 RDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWI 271

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM--LRKDKFTWTAMIVGLAING 428
             YIDK+++K +  +  +L+DMY KCG+++ A +VF +   L+   + W AMI G A++G
Sbjct: 272 HVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHG 331

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
              +++D+F QM    + P++VT+V +L+AC+H  +V+EGR YF  M   +GIEP   HY
Sbjct: 332 KSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHY 391

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
           GCMVDLLGR+G L EA E + NMPM P++ +WGALLGACR+H+D E  +   K I ELD 
Sbjct: 392 GCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDS 451

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
           D+   +VLL N+Y+A  +WD  + +RQ I   G KKTPGCS IE+NGV H+F+ GD+SHP
Sbjct: 452 DHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHP 511

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQHSEKLAMAFGLISSGP 667
           QTK++YL LDEMT+ LK  GY+P+  EV LD+  EEDKE A+ +HSEKLA+AFGLI++ P
Sbjct: 512 QTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPP 571

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G  IRIVKNLR+C DCH   K +S VY RE+IVRD+ R+HHFK G CSCKDYW
Sbjct: 572 GTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/438 (30%), Positives = 215/438 (49%), Gaps = 71/438 (16%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIPRPSVC 81
           +E+C+SM+Q+KQ H+  I  GL+ +P   NKL+     S  G + YA ++F +IP+P V 
Sbjct: 22  LESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVF 81

Query: 82  LWNTMIKGYSRI-DSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           ++NTMIK ++ I  S  N + I+L M++ S   P+ YTF F+ K     + V  G+++  
Sbjct: 82  IYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRV 141

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY------KR 193
           H +K G +S++FV NA+I  Y   G VD AR +FD S   D+ +WN M  GY       R
Sbjct: 142 HAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGR 201

Query: 194 VKQ-------------------------FDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
            K+                         F E   LF EM + G  P   T+   L+ACA 
Sbjct: 202 AKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACAN 261

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN---IKNKDVISW 285
           L  LD G+  H Y+ + +I  N  L  +L DMYA CGE+ FA ++F +   +K K V  W
Sbjct: 262 LVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPW 320

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            A++ GY   G                               + +EA+ LF +M+   + 
Sbjct: 321 NAMIGGYAMHG-------------------------------KSKEAIDLFEQMKVEKVS 349

Query: 346 PDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           P++ T V++L AC++   +E G  + K+      ++ +I     ++D+  + G +++A+ 
Sbjct: 350 PNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEE 409

Query: 405 -VFREMLRKDKFTWTAMI 421
            VF   +  D   W A++
Sbjct: 410 TVFNMPMAPDATIWGALL 427


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/589 (43%), Positives = 376/589 (63%), Gaps = 4/589 (0%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCL---CGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           K+ H  +++ G  +       +I  +C     G+++ A  +FD     D   +N +F GY
Sbjct: 37  KQYHSQIIRLGLSADNDAMGRVIK-FCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGY 95

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            R +       ++  M  K V P   T   ++ AC     ++ GK+ H +V +     + 
Sbjct: 96  LRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADG 155

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
              N L  MY     +  A  +F N+  +DV+SWT+++TGY   G VD AR+ F+ MPER
Sbjct: 156 FSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPER 215

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           + V W AMI  Y++ NR  EA  LF  M+  N+  D+F   S+L+AC  LGALE G+W+ 
Sbjct: 216 NSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIH 275

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            YI+K+ ++ D  +   +IDMYCKCG +EKA  VF E+ +K   +W  MI GLA++G G+
Sbjct: 276 GYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGE 335

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
            ++++F +M R  + PD +T+V VLSAC H+G+V+EG+ YF  MT   G++P   H+GCM
Sbjct: 336 AAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCM 395

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAG L EA ++I  MP+ P++ V GAL+GACR+H + E+ E   K+++EL+P N 
Sbjct: 396 VDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNS 455

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL N+YA+  RW++  ++R+++ DRG+KK PG SMIE    V EF+AG ++HPQ K
Sbjct: 456 GRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAK 515

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           EIY KLDE+   ++ +GY+PD   V  D+ EE+KE  +Y HSEKLA+AFGL+ + PG T+
Sbjct: 516 EIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETL 575

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI KNLR+C DCH+ +KL+S VYDRE+I+RD+ RFHHF+ G CSCKDYW
Sbjct: 576 RISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 220/459 (47%), Gaps = 69/459 (15%)

Query: 8   SPPSTLTQET---PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKG 63
           SPPS  + +    PL   +++C +M +LKQ HSQ I+LGL  +     +++ FC  S+ G
Sbjct: 10  SPPSLSSAKAHKLPLYG-LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSG 68

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           D+ YA +VF KIP P   ++NT+ +GY R    +N + +Y  ML   V P+ +T+P L++
Sbjct: 69  DLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIR 128

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQN----------------------------- 154
               D A+E GK++H HVLKFGF +  F  N                             
Sbjct: 129 ACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVS 188

Query: 155 --ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             +LI+ Y   G VD AR +F++  + + V+WNAM + Y +  +  E   LF  M  + V
Sbjct: 189 WTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENV 248

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
           +        +LSAC  L  L+ GK  H Y+++  I  +  L   + DMY  CG +  A E
Sbjct: 249 VLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASE 308

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  +  K + SW  ++ G    G+ +                                A
Sbjct: 309 VFNELPQKGISSWNCMIGGLAMHGKGEA-------------------------------A 337

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALID 391
           + LF+EM+   + PD  T V++L+ACA+ G +E G+    Y+ +   +K  +     ++D
Sbjct: 338 IELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVD 397

Query: 392 MYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           +  + G +E+A+++  EM +  D     A++    I+G+
Sbjct: 398 LLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGN 436


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 270/688 (39%), Positives = 426/688 (61%), Gaps = 3/688 (0%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           QIH   IK+    +  VQN LV F  +E G++  A KVF ++   +V  W +MI GY+R 
Sbjct: 154 QIHGLIIKMDYAKDLFVQNSLVHFY-AECGELDCARKVFDEMSERNVVSWTSMICGYARR 212

Query: 94  DSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
           +  K+ V ++  M++  DV P++ T   ++    +   +E G++++  +   G + +  +
Sbjct: 213 EFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLM 272

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            +AL+  Y  C  +D+A+ +FD     ++   NAM S Y R     E   +   M   G+
Sbjct: 273 ISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGI 332

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P  ++++  +S+C++L+++  GK  H YV          + NAL DMY  C     A  
Sbjct: 333 RPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFR 392

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           IF  + NK V++W +IV GYI  G+VD A + F+ MPE++ V W  +I   ++ N + EA
Sbjct: 393 IFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEA 452

Query: 333 LTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           + +F  MQ+   +  D  T++SI +AC +LGAL+L +W+  YI+KN+++ D+ +G  L+D
Sbjct: 453 IEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVD 512

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           M+ +CGD E A  +F  +  +D   WTA I  +A+ G+ ++++++F++M+   + PD V 
Sbjct: 513 MFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVV 572

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           ++G L+AC H G+V +G+E F  M   HG+ P + HYGCMVDLLGRAG L EAL++IK+M
Sbjct: 573 FIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDM 632

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P +PN ++W +LL ACRV  + EMA  AA++I  L P+    YVLL N+YA+  RW++  
Sbjct: 633 PTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMA 692

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
           ++R  + ++G++K PG S+I++ G  HEF +GD+SHP+ ++I   LDE++     +G++P
Sbjct: 693 KVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHVP 752

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           D+S V +DV E++K   + +HSEKLAMAFGLISS  G TIRIVKNLR+C  CH  AK  S
Sbjct: 753 DLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFAS 812

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDY 719
            VY+RE+I+RD  RFH  + G CSC D+
Sbjct: 813 KVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 153/511 (29%), Positives = 255/511 (49%), Gaps = 45/511 (8%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC--S 60
           S  S+   S  T+ TP  S ++ C+++ +LK  H    K GL  + +   KLV   C   
Sbjct: 20  SKPSLPNQSKRTKATP--SSLKNCKTIDELKMFHLSLTKQGLDDDVSAITKLVARSCELG 77

Query: 61  EKGDMKYACKVFRKIPRPSVC-LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
            +  + +A +VF        C ++N++I+GY+     K  +L+++ M+ S + PD YTFP
Sbjct: 78  TRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFP 137

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           F L    +      G ++H  ++K  +   +FVQN+L+  Y  CGE+D AR +FD   + 
Sbjct: 138 FGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSER 197

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           +VV+W +M  GY R +   +   LF  M R + V+P SVT+V V+SACAKL+DL+ G++ 
Sbjct: 198 NVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKV 257

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           + ++++  I  N ++ +AL DMY  C                                 +
Sbjct: 258 YDFIRDSGIEVNDLMISALVDMYMKC-------------------------------NAI 286

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
           D+A++ FD+    +  L  AM   Y+R    +EAL +   M  S IRPD  +++S +++C
Sbjct: 287 DIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSC 346

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           + L  +  G+    Y+ +N  ++   + NALIDMY KC   + A R+F  M  K   TW 
Sbjct: 347 SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWN 406

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           +++ G   NG  D + + F+ M   +I    V++  ++SA     M +E  E F  M  Q
Sbjct: 407 SIVAGYIENGEVDAAWETFNTMPEKNI----VSWNTIISALVQENMYEEAIEVFHYMQSQ 462

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
             +  +      M+ +    GHL  AL++ K
Sbjct: 463 ECVNVDGV---TMMSIASACGHLG-ALDLAK 489


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 291/773 (37%), Positives = 423/773 (54%), Gaps = 75/773 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            ++ I    ++HQL Q H+Q I  GL  +     KL T   S    +  A  +F  IP P
Sbjct: 13  FLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKL-THKLSHLKAIDQASLLFSTIPNP 71

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            + L+N +I+ +S  +S  + V +Y  + KS  + PDN+T+ F++ G +           
Sbjct: 72  DLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAH 131

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
               +  GF S +FV +A+++ Y     V  AR +FD   + D V WN M SG  +   F
Sbjct: 132 S---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCF 188

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL-----------DVGKRAHRYV---- 242
           DE   +FG+M + G+   S T+  VL   A+L+DL            VG  +H YV    
Sbjct: 189 DEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGL 248

Query: 243 ----KECKIV------------PNLILENALTDMYAACGEMGFALEIF------GNIKNK 280
                +C  +            P+L+  NA+   Y    E   ++ +F      G   N 
Sbjct: 249 ACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNS 308

Query: 281 DVI---------------------------------SWTAIVTGYINRGQVDMARQYFDQ 307
             I                                   TA+ T Y    +++ AR  FD+
Sbjct: 309 SSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDE 368

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
             E+    W AMI GY +     +A++LF+EMQ   +RP+  T+ SIL+ACA LGAL LG
Sbjct: 369 SSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG 428

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           +WV   I++   +++IFV  ALIDMY KCG + +AQR+F  M  K+  TW AMI G  ++
Sbjct: 429 KWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLH 488

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G+G ++L++F++ML + + P  VT++ VL AC+H G+V EG E F  M   HG EP   H
Sbjct: 489 GYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEH 548

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y CMVDLLGRAG+L++AL+ I+ MP++P   VWGALLGAC +H+DA +A +A+ ++ ELD
Sbjct: 549 YACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELD 608

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P N   YVLL NIY+A   +     +R ++  R + KTPGC++IE+   +H F +GD+SH
Sbjct: 609 PQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSH 668

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           PQ   IY  L+++T  ++  G+  +      DV EE+KE  V  HSEKLA+AFGLI+S P
Sbjct: 669 PQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEP 728

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G  IRI+KNLR+C+DCH   K +S + +R ++VRD  RFHHFK G CSC DYW
Sbjct: 729 GTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 290/704 (41%), Positives = 400/704 (56%), Gaps = 90/704 (12%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKY 67
           PP  L Q  P ++ + TC+S   LKQIHSQ IK GL       +KL+ FC  S  G++ Y
Sbjct: 25  PPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSY 84

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A  +F  I +P+  +WNTMI+G S   S    +  Y+ ML   V P++YTFPFLLK   +
Sbjct: 85  ALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK 144

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV--------------------- 166
             A + GK++H HVLK G +S  FV  +LI+ Y   GE+                     
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 167 ----------DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
                     D AR +F+     D V+WNAM +GY +  +F+E    F EM+R  V P  
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T+V VLSACA+   L++G     ++++  +  NL L NAL DMY+ CG++         
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL--------- 315

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
                                 D AR  F+ + E+D + W  MI GY  +N ++EAL LF
Sbjct: 316 ----------------------DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALF 353

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCK 395
           R+MQ SN+ P++ T VSIL ACA LGAL+LG+W+  YIDK  +   +  +  +LIDMY K
Sbjct: 354 RKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAK 413

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG++E A++VF  M  K   +W AMI GLA++GH + +L++F QM      PD++T+VGV
Sbjct: 414 CGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGV 473

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           LSAC+H G+V+ GR+ F+ M   + I P   HYGCM+DLLGRAG  +EA  ++KNM MKP
Sbjct: 474 LSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKP 533

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           +  +WG+LLGACRVH + E+ E AAK + EL+P+N   YVLL NIYA   RWD+   +R 
Sbjct: 534 DGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRT 593

Query: 576 MILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL-KFVGYMPDIS 634
            + D+G+KK                          ++IY  LDE+     +  G +PD S
Sbjct: 594 KLNDKGMKK-------------------------XQDIYKMLDEIDQSFGERPGXVPDTS 628

Query: 635 EVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
           EV  D+ EE KE ++  HSEKLA+AFGLIS+ P  TIRIVKNLR
Sbjct: 629 EVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLR 672


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/622 (42%), Positives = 390/622 (62%), Gaps = 52/622 (8%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           ML++DV P   +F  +L+        + G+  HC ++K GF+  + +Q  L+  Y   G+
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           +  A+                               ++F  M R+ V+  +  I    SA
Sbjct: 61  LKCAK-------------------------------RVFMGMPRRDVVANNAMI----SA 85

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILE------NALTDMYAACGEMGFALEIFGNIKN 279
            +K          H YV+E + + + + E      N++   Y   G++  A  +F     
Sbjct: 86  LSK----------HGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSARLMFDCNPV 135

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQM-PERDYVLWTAMIDGYLRVNRFREALTLFRE 338
           KDV+SW AI+ GY    Q+  A++ F  M   R+ V W  MI  Y++   F  A+++F++
Sbjct: 136 KDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQ 195

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           MQ+ N++P E T+VS+L+ACA+LGAL++GEW+  YI   ++K D+ +GNALIDMYCKCG 
Sbjct: 196 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 255

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           +E A  VF  + RK+ F W ++IVGL +NG G++++  F  M +  I PD VT+VG+LS 
Sbjct: 256 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 315

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C+H+G++  G+ YF++M   +G+EP   HYGCMVDLLGRAG+L EALE+I+ MPMKPNS+
Sbjct: 316 CSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSM 375

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           V G+LL AC++H+D ++ E   +Q+LELDP +   YV L N+YA+ +RWD+    R++++
Sbjct: 376 VLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMI 435

Query: 579 DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL 638
            RG+ KTPGCS IE+N +VHEFVAGD SHPQ  +I   LDE+  +LK  G++P+ + V  
Sbjct: 436 KRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLH 495

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
           D+ EE+KE A+  HSE++A+AFGL+S+ PG TIR+VKNLR C DCH   KL+S  + RE+
Sbjct: 496 DIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREI 555

Query: 699 IVRDKTRFHHFKHGSCSCKDYW 720
           IVRD+ RFHHF++GSCSC DYW
Sbjct: 556 IVRDRKRFHHFRNGSCSCNDYW 577



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 172/425 (40%), Gaps = 110/425 (25%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV------------ 80
           +  H Q +K+G   +  +Q  L+ F  ++ GD+K A +VF  +PR  V            
Sbjct: 30  EAFHCQIMKMGFEYDMILQTGLLDFY-AKVGDLKCAKRVFMGMPRRDVVANNAMISALSK 88

Query: 81  -------------------CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP--DNYTFP 119
                              C WN+MI  Y ++    +  L++      D  P  D  ++ 
Sbjct: 89  HGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSARLMF------DCNPVKDVVSWN 142

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            ++ G+ +   +   +EL    L  G   +    N +IS Y  CGE              
Sbjct: 143 AIIDGYCKSKQLVAAQEL---FLLMGSARNSVTWNTMISAYVQCGE-------------- 185

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
                            F     +F +M+ + V PT VT+V +LSACA L  LD+G+  H
Sbjct: 186 -----------------FGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 228

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
            Y++  ++  +++L NAL DMY  CG +  A+++F  +  K++  W +I+ G    G   
Sbjct: 229 GYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNG--- 285

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
                                       R  EA+  F  M+   I+PD  T V IL+ C+
Sbjct: 286 ----------------------------RGEEAIAAFIVMEKEGIKPDGVTFVGILSGCS 317

Query: 360 NLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           + G L  G+ +    +    ++  +     ++D+  + G +++A  + R M  K      
Sbjct: 318 HSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----N 373

Query: 419 AMIVG 423
           +M++G
Sbjct: 374 SMVLG 378



 Score = 42.7 bits (99), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 16  ETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           E  ++S +  C  +  L   + IH       L  +  + N L+   C + G ++ A  VF
Sbjct: 205 EVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYC-KCGALEAAIDVF 263

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             + R ++  WN++I G       +  +  ++ M K  ++PD  TF  +L G +    + 
Sbjct: 264 HGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLS 323

Query: 133 FGKELHCHVLK-FGFDSSV 150
            G+     +L  +G +  V
Sbjct: 324 AGQRYFSEMLGVYGLEPGV 342


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/593 (42%), Positives = 385/593 (64%), Gaps = 8/593 (1%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM---ARGIFDVSYKDDVVTWNAMFSGY 191
           K++H H+ + G +   FV   L+ T     +V M    R +F      +   W A+  GY
Sbjct: 56  KQVHAHIFRKGLEQCCFVLAKLLRTLTKL-DVPMDPYPRLVFQQVEYPNPFLWTALIRGY 114

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPN 250
                F E+  L+  M R+G+ P S T   +L AC+   D+++G++ H + +       +
Sbjct: 115 ALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSD 174

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           L + N L DMY  CG +G    +F  + ++DVISWT+++  Y   G ++ A + FD +P 
Sbjct: 175 LYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPM 234

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           +D V WTAM+ GY +  R REAL +F  MQ + ++ DE T+V +++ACA LGA +   WV
Sbjct: 235 KDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWV 294

Query: 371 KTYIDKNKV--KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           +   +++     +++ VG+ALIDMY KCG VE A +VF  M  ++ +++++MIVG A++G
Sbjct: 295 RDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHG 354

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
               ++++F +ML+  I P+ VT++GVL+AC+H GMV++G++ FA M   HG+ P+E HY
Sbjct: 355 LAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHY 414

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
            CMVDLLGRAG L EAL ++K MPM P+  VWGALLGACR+H + +MA++AA  + EL+P
Sbjct: 415 ACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEP 474

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE-MNGVVHEFVAGDKSH 607
           +    Y+LL NIYA+  RWD+  ++R+++  +G+KK PGCS +E   G++HEF AGD SH
Sbjct: 475 NGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSH 534

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P+++EI   L+++   LK++GY P++S V  D+ +E+K+R +  HSEKLA+AFGL+++  
Sbjct: 535 PKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTTNA 594

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G TIRIVKNLR+C DCH +    S +  RE++VRD  RFHHF+ G CSC ++W
Sbjct: 595 GCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 204/453 (45%), Gaps = 68/453 (15%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM-KYACKVFRK 74
           E+ L+S +  C  ++Q+KQ+H+   + GL     V  KL+         M  Y   VF++
Sbjct: 39  ESRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQ 98

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           +  P+  LW  +I+GY+        VL+Y  M +  + P ++TF  LLK  +  + V  G
Sbjct: 99  VEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLG 158

Query: 135 KELHCH-VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD--------------VSYK- 178
           +++H   +L  GF S ++V N LI  Y  CG +     +FD              V+Y  
Sbjct: 159 RQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAK 218

Query: 179 ----------------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
                            D+V W AM +GY +  +  E  ++F  M+  GV    VT+V V
Sbjct: 219 VGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGV 278

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVP--NLILENALTDMYAACGEMGFALEIFGNIKNK 280
           +SACA+L             ++    P  N+++ +AL DMYA CG +  A ++F  ++ +
Sbjct: 279 ISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEER 338

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +V S+++++ G+   G    A + FD                               EM 
Sbjct: 339 NVYSYSSMIVGFAMHGLAGAAMELFD-------------------------------EML 367

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDV 399
            + I+P+  T + +LTAC++ G +E G+ +   +++ + V         ++D+  + G +
Sbjct: 368 KTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRL 427

Query: 400 EKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
           E+A  + + M +      W A++    I+G+ D
Sbjct: 428 EEALNLVKMMPMNPHGGVWGALLGACRIHGNPD 460


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 268/627 (42%), Positives = 412/627 (65%), Gaps = 10/627 (1%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKG 63
           SS S  +  T +   I  +  C+SM QLKQI SQ  ++GL  +    NKL+ FC  S  G
Sbjct: 86  SSSSASNLQTNKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLG 145

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           +++YA K+F  +  PS+ ++N M+K Y++    +  +L++  + +  + PD +T+PF+LK
Sbjct: 146 NLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLK 205

Query: 124 --GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
             G  RD  V  G+++   ++K G D   +V N+LI  Y     V+ A+ +FD     D 
Sbjct: 206 AIGCLRD--VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDS 263

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           V+WN M SGY R ++F++    F EM+++G   P   T+V  LSAC  LK+L++G   H 
Sbjct: 264 VSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHN 323

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           YV++ ++     ++NAL DMYA CG +  A  IF  +  K+VI WT++++GYIN G +  
Sbjct: 324 YVRK-ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLRE 382

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           AR  FD+ P RD VLWTAMI+GY++ + F +A+ LFREMQ   I+PD+FT+V++LT CA 
Sbjct: 383 ARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQ 442

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           LGALE G+W+  Y+D+N++  D+ VG ALI+MY KCG V+K+  +F E+  KD  +WT++
Sbjct: 443 LGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSI 502

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I GLA+NG   ++L +FS+M R    PD++T++GVLSAC+H G+V+EGR +F  M   H 
Sbjct: 503 ICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHR 562

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV---WGALLGACRVHRDAEMAE 537
           IEP   HYGC++DLLGRAG L+EA E+I+ +P++   IV   +GALL ACR+H + +M E
Sbjct: 563 IEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGE 622

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
             AK++  ++  + +++ LL NIYA+ +RW++ +++R+ + + G+KK PGCS+IE++G+V
Sbjct: 623 RLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIV 682

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDL 624
           HEF+ GD SHP+  EI   L+ +T  L
Sbjct: 683 HEFLVGDPSHPEMIEICSMLNRVTGQL 709


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 275/700 (39%), Positives = 407/700 (58%), Gaps = 33/700 (4%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S I+       L QIH++ +  GL  N  +  KLV    S  G + YA K+F +   P V
Sbjct: 61  SLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVN-GSSNLGQICYARKLFDEFCYPDV 119

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            +WN +I+ YSR + +++ V +Y  M  + V PD +TFP++LK  T  +       +H  
Sbjct: 120 FMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQ 179

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           ++K+GF S VFVQN L++ Y  CG + +A+ +FD  Y   +V+W ++ SGY +  +  E 
Sbjct: 180 IIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEA 239

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
            ++F +M   GV P  + +V +L A   + DL+ G+  H +V +  +     L  +LT  
Sbjct: 240 LRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAF 299

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           YA CG                                V +A+ +FDQM   + ++W AMI
Sbjct: 300 YAKCG-------------------------------LVTVAKSFFDQMKTTNVIMWNAMI 328

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            GY +     EA+ LF  M + NI+PD  T+ S + A A +G+LEL +W+  Y+ K+   
Sbjct: 329 SGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYG 388

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
           +DIFV  +LIDMY KCG VE A+RVF     KD   W+AMI+G  ++G G ++++++  M
Sbjct: 389 SDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVM 448

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
            +A + P++VT++G+L+AC H+G+V EG E F  M     I P   HY C+VDLLGRAG+
Sbjct: 449 KQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMK-DFEIVPRNEHYSCVVDLLGRAGY 507

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L EA   I  +P++P   VWGALL AC+++R   + E AA ++  LDP N   YV L N+
Sbjct: 508 LGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNL 567

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YA+   WD    +R ++ ++G+ K  G S+IE+NG +  F  GDKSHP  KEI+ +L  +
Sbjct: 568 YASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRL 627

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
              LK VG++P    V  D+  E+KE  +  HSE++A+A+GLIS+ PG T+RI KNLR C
Sbjct: 628 ERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRAC 687

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           V+CH   KL+S + +RE+IVRD  RFHHFK G CSC DYW
Sbjct: 688 VNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/614 (42%), Positives = 397/614 (64%), Gaps = 40/614 (6%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNP----TVQNKLVTFCC-SEKGDMKYACKVFR 73
            +S ++TC+S+  LKQIH+  IK   + +P    T+  +L   C  S   D +YA  +  
Sbjct: 25  FLSTLQTCKSIKGLKQIHASIIKT--MPSPDAQLTISTRLSALCAQSLPIDPRYALSLLA 82

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHK-NGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           ++  P++ L+N +I+G +  ++    G+++Y  ML   + PDNYT PF+LK      AV 
Sbjct: 83  QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVR 142

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G+E+H   +K G  S V+V N L+  Y +C  +  AR +FD S + D+V+W  M  GY 
Sbjct: 143 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 202

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECKIVPNL 251
           ++    E   LF EM  + +    +T+V+VLS+CA+L DL +G++ HRY ++   +  ++
Sbjct: 203 KMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDV 262

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + NAL DMY  CG+  FA ++F  +  K+V+SW ++++G   +GQ              
Sbjct: 263 FVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQ-------------- 308

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
                            F+E+L +FR+MQ   ++PD+ T+V++L +CANLG LELG+WV 
Sbjct: 309 -----------------FKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVH 351

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            Y+D+N+++ D F+GNAL+DMY KCG +++A  VF+ M RKD +++TAMIVGLA++G G 
Sbjct: 352 AYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGG 411

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           K+LD+FS+M +  I PDEVT+VGVL+AC+H G+V+EGR+YF DM+  + + P   HYGCM
Sbjct: 412 KALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCM 471

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAG +NEA E I+NMP++P++ V GALLGAC++H   E+ E   K+I +++P  +
Sbjct: 472 VDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKD 531

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVL+ NIY++ NRW +  +LR+ + +R ++KTPGCS IE++GV+HEF  GDKSHP+ K
Sbjct: 532 GAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIK 591

Query: 612 EIYLKLDEMTSDLK 625
           EIY  LDE+ S LK
Sbjct: 592 EIYKLLDEIMSHLK 605


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/712 (39%), Positives = 410/712 (57%), Gaps = 32/712 (4%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P T  Q   L+      +S  Q +Q+H+  I   +L N T  N  +    +  G M  A 
Sbjct: 56  PLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAE 115

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
            +F  I   +  LWN MI+GY+        +++Y +ML    R DN+T+PF+LK     +
Sbjct: 116 VIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLL 175

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            VE G+ +H  V+  G +S ++V N+L++ Y   G++  AR +FD   + D+ +WN M S
Sbjct: 176 LVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMIS 235

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY +         +F  M + G+     T++ +LSACA LK +  GK  H Y     I  
Sbjct: 236 GYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGN 295

Query: 250 -NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            N    N+L +MY  C  M                              VD AR+ F+++
Sbjct: 296 YNKFFTNSLIEMYCNCNCM------------------------------VD-ARRLFERV 324

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
             +D V W +MI GY R     E+L LFR M      PD+ T +++L AC  + AL  G 
Sbjct: 325 RWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGM 384

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            + +Y+ K     +  VG AL+DMY KCG +  ++RVF EM  K   +W+AM+ G  ++G
Sbjct: 385 SIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHG 444

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
            G +++ +   M   S+IPD   +  +LSAC+H G+V EG+E F  M  ++ ++P  +HY
Sbjct: 445 RGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHY 504

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
            CMVDLLGRAGHL+EA  +I+ M +KP S +W ALL A R+H++ ++AE++A+++ +++P
Sbjct: 505 SCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNP 564

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
              + Y+ L NIYAA  RWD+   +R M+  +G+KK+PGCS IE++ +VH F+ GDKSH 
Sbjct: 565 KVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQ 624

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPG 668
           QT++IY KL+E+   LK  GY PD S VF DV EE KE+ ++ HSE+LA+AF LI++GPG
Sbjct: 625 QTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPG 684

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             IRI KNLR+C DCH + KL+S +  RE+I+RD  RFHHF  G CSC DYW
Sbjct: 685 TVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 258/613 (42%), Positives = 398/613 (64%), Gaps = 12/613 (1%)

Query: 1   MFSNSSISPPSTLT----------QETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTV 50
           +F NSS   P T T          +E PL+S +E C+S+ QLKQI +Q +  GL+ N   
Sbjct: 32  IFHNSSSLSPITKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFA 91

Query: 51  QNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-K 108
            ++LV FC  SE  ++ Y  ++  +I   +V  WN  I+GY      + G ++Y  ML  
Sbjct: 92  ASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLG 151

Query: 109 SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM 168
             ++PDN+T+P LLKG     +   G  +  HVLKFGF+  +FV NA I+    CGE+ +
Sbjct: 152 GTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSV 211

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           A  +F+ S   D+VTWN+M +G  +     E  K++ EME + V P  +T++ ++S+C++
Sbjct: 212 AYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ 271

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           ++DL++GK  H Y+KE  +   + L NAL DMY  CGE+  A  +F N+  K ++SWT +
Sbjct: 272 VQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTM 331

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           V GY   G +D+AR+   ++PE+  V W A+I G ++  + +EAL LF EMQ   I PD+
Sbjct: 332 VLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDK 391

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T+V+ L+AC+ LGAL++G W+  YI+++K+  D+ +G AL+DMY KCG++ +A +VF E
Sbjct: 392 VTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEE 451

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           + +++  TWTA+I GLA++G+   +L  FS+M+   I+PDE+T++GVLSAC H G+V+EG
Sbjct: 452 IPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEG 511

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           R+YF++M+ +  + P   HY CMVDLLGRAGHL EA E++KNMPM  ++ V GAL  ACR
Sbjct: 512 RKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACR 571

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
           V+ + ++ E  A ++LE+DP +   YVLL ++Y+    W   R  R+++ D+G++KTPGC
Sbjct: 572 VYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGC 631

Query: 589 SMIEMNGVVHEFV 601
           S++E+NG+VHEFV
Sbjct: 632 SLVEINGIVHEFV 644


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/606 (42%), Positives = 380/606 (62%), Gaps = 12/606 (1%)

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174
           N+T PF LK            +LH H+LK     S    + + S          A+ IF 
Sbjct: 24  NFTSPFELK------------QLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQ 71

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
           +    +V  WN     +       +   LF  +    + P   T   VL AC++L D+  
Sbjct: 72  LLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRN 131

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           GK  H YV++  +  N+ L+N +  +YA CGE+G A ++F  +  +DVI+W  ++   + 
Sbjct: 132 GKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVK 191

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G  + A + F +MPER+   WT+MI GY +  + +EA+ LF EM+ + + P+E T+V++
Sbjct: 192 MGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAV 251

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           L ACA++G L LG  +  + +++  + +I V N LIDMY KCG +E A R+F  M  +  
Sbjct: 252 LVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTV 311

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +W+AMI GLA +G  + +L +F++M+   + P+ VT++G+L AC+H GMV++GR+YFA 
Sbjct: 312 VSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFAS 371

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           MT  +GI P   HYGCMVDL  RAG L EA E I NMP+ PN +VWGALLG C+VH++ +
Sbjct: 372 MTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIK 431

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           +AE A + + +LDP N+  YV+L NIYA   RW++   +R+++ DRG+KKTPG S I + 
Sbjct: 432 LAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVE 491

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
           GVV+ FVAGD +HPQT+EI+   +++   +K  GY+P+ S V LD+ E+ KE+ +Y+HSE
Sbjct: 492 GVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSE 551

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           KLA+ FGLI + PG  IRI+KNLR+C DCH   K++S+V  RE++VRD+ RFH FK+GSC
Sbjct: 552 KLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSC 611

Query: 715 SCKDYW 720
           SC DYW
Sbjct: 612 SCGDYW 617



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 209/453 (46%), Gaps = 80/453 (17%)

Query: 20  ISPIETCESMH---------QLKQIHSQTIKLGLLTNPTVQN---KLVTFCCSEKGDMKY 67
           +SP+    S H         +LKQ+H+  +K    TN  + +     V   C+      Y
Sbjct: 10  VSPLHHRPSTHLLHNFTSPFELKQLHAHLLK----TNSPLSSLPLSRVASVCAFNSSFSY 65

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A  +F+ +    V  WNT ++ ++  DS  + + ++  + + D+ PD+YT  F+LK  +R
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN-- 185
            + V  GK +H +V K G  S++F+QN ++  Y LCGE+ +AR +FD   + DV+TWN  
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185

Query: 186 -----------------------------AMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
                                        +M  GY +  +  E   LF EME  G+LP  
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
           VT+V VL ACA + +L +G+R H +        N+ + N L DMY  CG +  A  IF N
Sbjct: 246 VTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDN 305

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           ++ + V+SW+A++ G    G                               R  +AL LF
Sbjct: 306 MEERTVVSWSAMIAGLAAHG-------------------------------RAEDALALF 334

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCK 395
            +M  + ++P+  T + IL AC+++G +E G ++  +      +   I     ++D++ +
Sbjct: 335 NKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSR 394

Query: 396 CGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
            G +++A      M +  +   W A++ G  ++
Sbjct: 395 AGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVH 427



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 91/204 (44%), Gaps = 9/204 (4%)

Query: 13  LTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           L  E  +++ +  C  M  L   ++IH  + + G   N  V N L+     + G ++ AC
Sbjct: 242 LPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYV-KCGCLEDAC 300

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           ++F  +   +V  W+ MI G +     ++ + ++  M+ + V+P+  TF  +L   +   
Sbjct: 301 RIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMG 360

Query: 130 AVEFGKELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARG-IFDVSYKDDVVTWNAM 187
            VE G++    + + +G    +     ++  +   G +  A   I ++    + V W A+
Sbjct: 361 MVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGAL 420

Query: 188 FSG---YKRVKQFDETRKLFGEME 208
             G   +K +K  +E  +   +++
Sbjct: 421 LGGCKVHKNIKLAEEATRHLSKLD 444


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/621 (42%), Positives = 412/621 (66%), Gaps = 11/621 (1%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYAC 69
           S LT+++  I  +  C+SM QLKQI SQ  ++GL  +    NKL+ FC  S  G+++YA 
Sbjct: 139 SKLTKKS-CIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAE 197

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--GFTR 127
           K+F  +  PS+ ++N M+K Y++    +  +L++  + +  + PD +T+PF+LK  G  R
Sbjct: 198 KIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLR 257

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
           D  V  G+++   ++K G D   +V N+LI  Y     V+ A+ +FD     D V+WN M
Sbjct: 258 D--VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVM 315

Query: 188 FSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
            SGY R ++F++    F EM+++G   P   T+V  LSAC  LK+L++G   H YV++ +
Sbjct: 316 ISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK-E 374

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
           +     ++NAL DMYA CG +  A  IF  +  K+VI WT++++GYIN G +  AR  FD
Sbjct: 375 LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFD 434

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
           + P RD VLWTAMI+GY++ + F +A+ LFREMQ   ++PD+FT+V++LT CA LGALE 
Sbjct: 435 KSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQ 494

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+W+  Y+D+N++  D+ VG ALI+MY KCG V+K+  +F E+  KD  +WT++I GLA+
Sbjct: 495 GKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAM 554

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           NG   ++L +FS+M R    PD++T++GVLSAC+H G+V+EGR +F  M   H IEP   
Sbjct: 555 NGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVE 614

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV---WGALLGACRVHRDAEMAEMAAKQI 543
           HYGC++DLLGRAG L+EA E+I+ +P++   IV   +GALL ACR+H + +M E  AK++
Sbjct: 615 HYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKL 674

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
             ++  + +++ LL NIYA+ +RW++ +++R+ + + G+KK PGCS+IE++G+VHEF+ G
Sbjct: 675 ENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVG 734

Query: 604 DKSHPQTKEIYLKLDEMTSDL 624
           D SHP+  EI   L+ +T  L
Sbjct: 735 DPSHPEMMEICSMLNRVTGQL 755


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 267/690 (38%), Positives = 408/690 (59%), Gaps = 37/690 (5%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           ++IH   I  G  +N      +V     C +  D   A K+F ++P+  +  WNT++ GY
Sbjct: 162 REIHGMVITNGFQSNLFAMTAVVNLYAKCRQIED---AYKMFERMPQRDLVSWNTVVAGY 218

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           ++    +  V + L M ++  +PD+ T   +L       A+  G+ +H +  + GF+  V
Sbjct: 219 AQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMV 278

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            V  A++ TY  CG V  AR +F      +VV+WN M  GY +  + +E    F +M  +
Sbjct: 279 NVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDE 338

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           GV PT+V+++  L ACA L DL+ G+  HR + E KI  ++ + N+L  MY+ C  +  A
Sbjct: 339 GVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIA 398

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
             +FGN+K+K V                               V W AMI GY +     
Sbjct: 399 ASVFGNLKHKTV-------------------------------VTWNAMILGYAQNGCVN 427

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           EAL LF EMQ+ +I+PD FT+VS++TA A+L      +W+     +  +  ++FV  ALI
Sbjct: 428 EALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALI 487

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           D + KCG ++ A+++F  M  +   TW AMI G   NGHG ++LD+F++M   S+ P+E+
Sbjct: 488 DTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEI 547

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T++ V++AC+H+G+V+EG  YF  M   +G+EP   HYG MVDLLGRAG L++A + I++
Sbjct: 548 TFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQD 607

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MP+KP   V GA+LGACR+H++ E+ E  A ++ +LDPD+   +VLL N+YA+ + WD  
Sbjct: 608 MPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKV 667

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
             +R  +  +GI+KTPGCS++E+   VH F +G  +HPQ+K IY  L+ +  ++K  GY+
Sbjct: 668 ARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYV 727

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           PD + +  DV E+ KE+ +  HSE+LA+AFGL+++  G  I I KNLR+C DCH   K +
Sbjct: 728 PDTNSIH-DVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYI 786

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+V  RE+IVRD  RFHHFK+G CSC DYW
Sbjct: 787 SLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 154/543 (28%), Positives = 253/543 (46%), Gaps = 75/543 (13%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           +E C S+ +L QI    IK G       Q KL++  C +   +  A +VF  +      L
Sbjct: 51  LELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFC-KFNSITEAARVFEPVEHKLDVL 109

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           ++TM+KGY++  + ++ V  Y  M   +V P  Y F +LL+    ++ +  G+E+H  V+
Sbjct: 110 YHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVI 169

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
             GF S++F   A+++ Y  C +++ A  +F+   + D+V+WN + +GY +        +
Sbjct: 170 TNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQ 229

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           +  +M+  G  P S+T+V VL A A LK L +G+  H Y         + +  A+ D Y 
Sbjct: 230 VVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYF 289

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG +  A  +F  + +++V+SW  ++ GY   G+ +                       
Sbjct: 290 KCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESE----------------------- 326

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
                   EA   F +M    + P   +++  L ACANLG LE G +V   +D+ K+  D
Sbjct: 327 --------EAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFD 378

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           + V N+LI MY KC  V+ A  VF  +  K   TW AMI+G A NG  +++L++F +M  
Sbjct: 379 VSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQS 438

Query: 443 ASIIPDEVTYVGVLSAC---------------------------------THT--GMVDE 467
             I PD  T V V++A                                  TH   G +  
Sbjct: 439 HDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQT 498

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV---IKNMPMKPNSIVWGALL 524
            R+ F  M  +H I  N      M+D  G  GH  EAL++   ++N  +KPN I + +++
Sbjct: 499 ARKLFDLMQERHVITWN-----AMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVI 553

Query: 525 GAC 527
            AC
Sbjct: 554 AAC 556



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 119/279 (42%), Gaps = 4/279 (1%)

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           T +++ +     +  A + F+ +  +  VL+  M+ GY + +  R+A+  +  M+   + 
Sbjct: 80  TKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVM 139

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           P  +    +L        L  G  +   +  N  ++++F   A++++Y KC  +E A ++
Sbjct: 140 PVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKM 199

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F  M ++D  +W  ++ G A NG   +++ +  QM  A   PD +T V VL A      +
Sbjct: 200 FERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKAL 259

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
             GR        + G E        M+D   + G +  A  V K M  + N + W  ++ 
Sbjct: 260 RIGRSIHG-YAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSR-NVVSWNTMID 317

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
                ++ E  E  A  +  LD   E   V +     AC
Sbjct: 318 G--YAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHAC 354


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/716 (38%), Positives = 420/716 (58%), Gaps = 32/716 (4%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           S ++ PS  ++   + + I    +++ LKQIH   I   L  +  + N L+      +  
Sbjct: 2   SIVTVPSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFR-Q 60

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
            KY+  +F     P++ L+N++I G+         + ++L + K  +    +TFP +LK 
Sbjct: 61  TKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKA 120

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
            TR  + + G +LH  V+K GF+  V    +L+S Y   G ++ A  +FD      VVTW
Sbjct: 121 CTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTW 180

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
            A+FSGY    +  E   LF +M   GV P S  IV VLSAC  + DLD G+   +Y++E
Sbjct: 181 TALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEE 240

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
            ++  N  +   L ++YA CG+M  A  +F ++  KD+++W+ ++ GY +          
Sbjct: 241 MEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYAS---------- 290

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
            +  P                    +E + LF +M   N++PD+F+IV  L++CA+LGAL
Sbjct: 291 -NSFP--------------------KEGIELFLQMLQENLKPDQFSIVGFLSSCASLGAL 329

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           +LGEW  + ID+++   ++F+ NALIDMY KCG + +   VF+EM  KD     A I GL
Sbjct: 330 DLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGL 389

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A NGH   S  +F Q  +  I PD  T++G+L  C H G++ +G  +F  ++  + ++  
Sbjct: 390 AKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRT 449

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGCMVDL GRAG L++A  +I +MPM+PN+IVWGALL  CR+ +D ++AE   K+++
Sbjct: 450 VEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELI 509

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
            L+P N   YV L NIY+   RWD   E+R M+  +G+KK PG S IE+ G VHEF+A D
Sbjct: 510 ALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADD 569

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           KSHP + +IY KL+++ ++++ +G++P    VF DV EE+KER +  HSEKLA+A GLIS
Sbjct: 570 KSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLIS 629

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  G  IR+VKNLR+C DCH + KL+S +  RE++VRD  RFH F +GSCSC DYW
Sbjct: 630 TDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/695 (39%), Positives = 408/695 (58%), Gaps = 66/695 (9%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFC-CSEKGD-MKYACKVFRKIPRPSVCLWNTM 86
           +  L+ IH+Q IK GL       +KL+ FC  S   D + YA  VF  I  P++ +WNTM
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
            +G++      + + +Y+ M+   + P++YTFPFLLK   +  A + G+++H HVLK G 
Sbjct: 63  FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFD-------VSYK--------------------- 178
           D  ++V  +LIS Y   G ++ A  +FD       VSY                      
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182

Query: 179 ---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
               DVV+WNAM SGY     + E  +LF +M +  V P   T+V V+SACA+   +++G
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           ++ H ++ +     NL + NAL D+Y+ CGE+                            
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGEL---------------------------- 274

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
              + A   F+ +P +D + W  +I GY  +N ++EAL LF+EM  S   P++ T++SIL
Sbjct: 275 ---ETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 331

Query: 356 TACANLGALELGEWVKTYIDK--NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
            ACA+LGA+++G W+  YIDK    V N   +  +LIDMY KCGD+E A +VF  +L K 
Sbjct: 332 PACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 391

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +W AMI G A++G  D S D+FS+M +  I PD++T+VG+LSAC+H+GM+D GR  F 
Sbjct: 392 LSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFR 451

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
            MT  + + P   HYGCM+DLLG +G   EA E+I  M M+P+ ++W +LL AC++H + 
Sbjct: 452 SMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNV 511

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           E+ E  A+ +++++P+N   YVLL NIYA   RW+     R ++ D+G+KK PGCS IE+
Sbjct: 512 ELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEI 571

Query: 594 NGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHS 653
           + VVHEF+ GDK HP+ +EIY  L+EM   L+  G++PD SEV  ++ EE KE A+  HS
Sbjct: 572 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 631

Query: 654 EKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           EKLA+AFGLIS+ PG  + IVKNLR+C +CH   K
Sbjct: 632 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  533 bits (1374), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/690 (38%), Positives = 407/690 (58%), Gaps = 37/690 (5%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           K+IH Q I      N      +V     C +  D   A K+F ++P   +  WNT+I G+
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDD---AYKMFDRMPERDLVSWNTIIAGF 223

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           S+    K  + + L M     RPD+ T   +L        +  GK +H + ++ GF   V
Sbjct: 224 SQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLV 283

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            +  AL   Y  CG V+ AR IFD   +  VV+WN+M  GY +  + ++   +F +M  +
Sbjct: 284 NISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEE 343

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G+ PT VTI+  L ACA L DL+ GK  H++V +  +  ++ + N+L  MY+ C      
Sbjct: 344 GIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCK----- 398

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
                                     +VD+A   F+ +  R +V W AMI GY +  R  
Sbjct: 399 --------------------------RVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVS 432

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           EAL  F EM++  ++PD FT+VS++ A A L      +W+   I ++ +  +IFV  AL+
Sbjct: 433 EALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALV 492

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMY KCG +  A+++F  +  +   TW AMI G   +G G  +LD+F +M + ++ P+++
Sbjct: 493 DMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDI 552

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           TY+ V+SAC+H+G+VDEG  +F  M   +G+EP+  HYG MVDLLGRAG + EA + I+N
Sbjct: 553 TYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIEN 612

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MP+ P   V+GA+LGAC++H++ E+ E AAK++ EL+PD    +VLL NIYA+ ++W   
Sbjct: 613 MPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKV 672

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
            E+R+ +  +G+KKTPGCS++E+   VH F +G  +HPQ+K IY  L+E+  ++K  GY+
Sbjct: 673 AEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYV 732

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           PD + + LDV ++ +E+ +  HSEKLA+AFGL+++ PG TI + KNLR+C DCH   K +
Sbjct: 733 PD-TNLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYI 791

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+V  RE+IVRD  RFHHFK+G CSC DYW
Sbjct: 792 SLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/513 (29%), Positives = 250/513 (48%), Gaps = 34/513 (6%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           P    +E C SM +L QI    IK GL      Q KLV+   S+ G +  A +VF  I  
Sbjct: 51  PAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLF-SKYGSINEAARVFEPIDD 109

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
               L++TM+KGY++  S +  +     M   DV+P  Y F +LLK    +  ++ GKE+
Sbjct: 110 KLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEI 169

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H  ++   F ++VF    +++ Y  C ++D A  +FD   + D+V+WN + +G+ +    
Sbjct: 170 HGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFA 229

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
            +  +L   M+ +G  P S+T+V VL A A +  L VGK  H Y         + +  AL
Sbjct: 230 KKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTAL 289

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            DMY+ CG +  A  IF  +  K V+SW +++ GY+  G+           PE+      
Sbjct: 290 ADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE-----------PEK------ 332

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                         A+ +F +M    I P   TI+  L ACA+LG LE G++V  ++D+ 
Sbjct: 333 --------------AIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQL 378

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            + +DI V N+LI MY KC  V+ A  +F  +  +   +W AMI+G A NG   ++L+ F
Sbjct: 379 NLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCF 438

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           S+M    + PD  T V V+ A     +    + +   + I+  ++ N      +VD+  +
Sbjct: 439 SEMKSLGMKPDSFTMVSVIPALAELSVTRHAK-WIHGLIIRSCLDKNIFVTTALVDMYSK 497

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            G ++ A ++  +M    + I W A++     H
Sbjct: 498 CGAIHMARKLF-DMISDRHVITWNAMIDGYGTH 529


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  533 bits (1374), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/724 (37%), Positives = 421/724 (58%), Gaps = 60/724 (8%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           ++H + +K G   N ++ N L+    S+ G +K  C++F K+    V  WNTMI  Y   
Sbjct: 154 EVHGRILKCGFGRNKSLNNNLMGLY-SKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLK 212

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
             ++  + ++ +ML S V PD  T   L+    +   +E GK LH +++    D+ ++++
Sbjct: 213 GMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIV----DNKLWIR 268

Query: 154 ----NALISTYCLCGE---------------------------------VDMARGIFDVS 176
               N L+  Y  CG+                                 +D AR +FD  
Sbjct: 269 GSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKM 328

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
            +  +V+W  M SGY +   + E+ +LF +M  + V+P  V +V VLSAC  L+D D+G+
Sbjct: 329 NERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGR 388

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
             H ++    ++ +  L NAL D+YA CG++  AL  F  +  K   SW +++ G+   G
Sbjct: 389 SVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSG 448

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
            VD AR +F+++PE+D V W  M++ Y++ + F E+  +F +MQ+SN++PD+ T++S+L+
Sbjct: 449 GVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLS 508

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           +CA +GAL  G WV  YI+KN++  D  +G ALIDMY KCG VE A  +F +++ K+ F 
Sbjct: 509 SCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFV 568

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           WTAM+   A+ G   +++D++ +M    + PD VT++ +L+AC+H G+VDEG +YF  + 
Sbjct: 569 WTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLR 628

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
             + I P   HYGCMVDLLGR GHL E ++ I+ MP++P+  +W +L+ ACR H + E+A
Sbjct: 629 SFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELA 688

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           E A KQ++E+DP N   +VLL NIYA   RWD+  ++R  + + G+ K PG +MIE NGV
Sbjct: 689 EQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGV 748

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKL 656
           VHEFVA   S+  + +I   L ++   L     + D +                QHSE+L
Sbjct: 749 VHEFVA---SNLVSADILCMLQDIERRLLVKQELSDTTS---------------QHSERL 790

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           A+AFGLI++     IR+V ++RMC DCH + KL+S  YDRE+++RD  RFH F  G CSC
Sbjct: 791 AVAFGLINNQENSPIRVVNSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSC 850

Query: 717 KDYW 720
           KDYW
Sbjct: 851 KDYW 854



 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 185/620 (29%), Positives = 305/620 (49%), Gaps = 76/620 (12%)

Query: 5   SSISP----PSTLTQETP--------LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQN 52
           SS+SP    P TL  +T         +I  +++C ++ +   IH+  I   L+ +P + +
Sbjct: 12  SSLSPSIHKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITS 71

Query: 53  KLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112
           +++ F  S   ++  A ++      P   +WNT+++   +    +  +  Y  M+   V 
Sbjct: 72  QVLAFLLS-VNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVL 130

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
            D  TF FL+    ++  V+ G E+H  +LK GF  +  + N L+  Y  CG++     +
Sbjct: 131 LDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQL 190

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           F+     DV++WN M S Y     + E   LF EM   GVLP  +T+V ++S CAKLKDL
Sbjct: 191 FEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDL 250

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK--DVISWTAIVT 290
           ++GKR H Y+ + K+     L N L DMY+ CG+M  A  +         DV+ WT +V+
Sbjct: 251 EMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVS 310

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
           GY+   ++D ARQ FD+M ER  V WT M+ GY++   + E+L LF++M+  N+ PDE  
Sbjct: 311 GYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVA 370

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           +V++L+AC +L   +LG  V  +I    +  D F+GNAL+D+Y KCG +++A R F ++ 
Sbjct: 371 LVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLP 430

Query: 411 RKDKFTWTAMIVGLAINGHGDK-------------------------------SLDMFSQ 439
            K   +W +M+ G   +G  DK                               S ++F +
Sbjct: 431 CKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCK 490

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM-----VDL 494
           M  +++ PD+ T + +LS+C   G ++ G      + +   IE NE     M     +D+
Sbjct: 491 MQSSNVKPDKTTLISLLSSCAKVGALNHG------IWVNVYIEKNEIGIDAMLGTALIDM 544

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA--------EMAEMAAKQILEL 546
            G+ G +  A E+   + ++ N  VW A++ A  +   A        EM E   K     
Sbjct: 545 YGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVK----- 598

Query: 547 DPDNEAVYVLLCNIYAACNR 566
            PD+     LL    AAC+ 
Sbjct: 599 -PDHVTFIALL----AACSH 613


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/591 (42%), Positives = 386/591 (65%), Gaps = 17/591 (2%)

Query: 43  GLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101
           GL+ +    ++L+ FC  SE  D+ Y   +      P+   WN  I+G+   ++ +  V+
Sbjct: 5   GLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVV 64

Query: 102 IYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY 160
           +Y  +L+ D  +PDNYT+P L K   R   +  G E+  HVL  GFDS +FV NA+I   
Sbjct: 65  LYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLL 124

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
             CG++D AR +FD S   D+V+WN+M +GY R     E    + EM+ +G+ P  VT++
Sbjct: 125 VSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMI 184

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            V+S+CA+L+DLD+G+ +H Y++E  +   + L NAL DMY  CG +  A ++F ++ NK
Sbjct: 185 GVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNK 244

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
            ++SWT ++               FD+MP++D V W AMI GY+  NR +EAL LF EMQ
Sbjct: 245 TMVSWTTML---------------FDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQ 289

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
             NI PDE T+VS L+AC+ LGAL++G W+  YI+K+++  ++ +G ALIDMY KCG + 
Sbjct: 290 AMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKIT 349

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
           KA +VF+E+  ++  TWTA+I GLA++G+   ++  FS+M+  S++PDEVT++G+LSAC 
Sbjct: 350 KAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACC 409

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           H G+V+EGR+YF+ M+ +  + P   HY CMVDLLGRAG L EA E+IK+MP++ +++VW
Sbjct: 410 HGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVW 469

Query: 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
           GAL  ACR+H +  M E AA ++L++DP +  +YVLL N+Y     W    + R+++  R
Sbjct: 470 GALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQR 529

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
           G++KTPGCS IE+NG+V+EF+  DKSHPQ+++IY  L ++T  L+ V   P
Sbjct: 530 GVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLELVECTP 580


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 267/690 (38%), Positives = 405/690 (58%), Gaps = 37/690 (5%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           K+IH Q I      N      +V     C +  D   A K+F ++P   +  WNT+I G+
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDD---AYKMFDRMPERDLVSWNTIIAGF 223

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           S+    K  + + L M     RPD+ T   +L        +  GK +H + ++ GF   V
Sbjct: 224 SQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLV 283

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            +  AL   Y  CG V+ AR IFD   +  VV+WN+M  GY +  + ++   +F +M  +
Sbjct: 284 NISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEE 343

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G+ PT VTI+  L ACA L DL+ GK  H++V +  +  ++ + N+L  MY+ C      
Sbjct: 344 GIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCK----- 398

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
                                     +VD+A   F+ +  R +V W AMI GY +  R  
Sbjct: 399 --------------------------RVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVS 432

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           EAL  F EM++  ++PD FT+VS++ A A L      +W+   I ++ +  +IFV  AL+
Sbjct: 433 EALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALV 492

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMY KCG +  A+++F  +  +   TW AMI G   +G G  +LD+F +M + ++ P+++
Sbjct: 493 DMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDI 552

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           TY+ V+SAC+H+G+VDEG  +F  M   +G+EP+  HYG MVDLLGRAG + EA + I+N
Sbjct: 553 TYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIEN 612

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MP+ P   V+GA  GAC++H++ E+ E AAK++ EL+PD    +VLL NIYA+ ++W   
Sbjct: 613 MPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKV 672

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
            E+R+ +  +G+KKTPGCS++E+   VH F +G  +HPQ+K IY  L+E+  ++K  GY+
Sbjct: 673 AEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYV 732

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           PD + + LDV ++ +E+ +  HSEKLA+AFGL+++ PG TI + KNLR+C DCH   K +
Sbjct: 733 PD-TNLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYI 791

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+V  RE+IVRD  RFHHFK+G CSC DYW
Sbjct: 792 SLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 152/513 (29%), Positives = 250/513 (48%), Gaps = 34/513 (6%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           P    +E C SM +L QI    IK GL      Q KLV+   S+ G +  A +VF  I  
Sbjct: 51  PAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLF-SKYGSINEAARVFEPIDD 109

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
               L++TM+KGY++  S +  +     M   DV+P  Y F +LLK    +  ++ GKE+
Sbjct: 110 KLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEI 169

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H  ++   F ++VF    +++ Y  C ++D A  +FD   + D+V+WN + +G+ +    
Sbjct: 170 HGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFA 229

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
            +  +L   M+ +G  P S+T+V VL A A +  L VGK  H Y         + +  AL
Sbjct: 230 KKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTAL 289

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            DMY+ CG +  A  IF  +  K V+SW +++ GY+  G+           PE+      
Sbjct: 290 ADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE-----------PEK------ 332

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                         A+ +F +M    I P   TI+  L ACA+LG LE G++V  ++D+ 
Sbjct: 333 --------------AIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQL 378

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            + +DI V N+LI MY KC  V+ A  +F  +  +   +W AMI+G A NG   ++L+ F
Sbjct: 379 NLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCF 438

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           S+M    + PD  T V V+ A     +    + +   + I+  ++ N      +VD+  +
Sbjct: 439 SEMKSLGMKPDSFTMVSVIPALAELSVTRHAK-WIHGLIIRSCLDKNIFVTTALVDMYSK 497

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            G ++ A ++  +M    + I W A++     H
Sbjct: 498 CGAIHMARKLF-DMISDRHVITWNAMIDGYGTH 529


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/591 (41%), Positives = 382/591 (64%), Gaps = 6/591 (1%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCL-----CGEVDMARGIFDVSYKDDVVTWNAMFS 189
           K +H ++++      VF  + LI+ +C+        +D A  IF      ++  +NAM  
Sbjct: 34  KIIHAYMIRTHIICDVFAASRLIA-FCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIR 92

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           G+   K  D+    + + +R+G+LP ++T   ++ +C KL  + +G +AH ++ +     
Sbjct: 93  GHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEK 152

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ ++N+L  MYA  G+   A  IF  +   DV+SWT+++ G+   G V+ AR+ FDQMP
Sbjct: 153 DVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMP 212

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           E++ V W+ MI GY + N F +A+ LF+ +Q+  +R +E  +VS++++CA+LGALELGE 
Sbjct: 213 EKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGER 272

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
              Y+ KN +  ++ +G AL+DMY +CG ++KA  VF ++  +D  +WTA+I GLA++G+
Sbjct: 273 AHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGY 332

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
            ++SL  F+ M+ A + P ++T+  VLSAC+H G+V+ G + F  M   H +EP   HYG
Sbjct: 333 SERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYG 392

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           CMVDLLGRAG L EA   +  MP+KPN+ VWGALLGACR+H++AE+ E   K +++L P 
Sbjct: 393 CMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQ 452

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           +   YVLL NIYA    W+   E+RQM+  +G+KK PG S+IE++G VH+F  GD SHP+
Sbjct: 453 HSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPE 512

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
             +I    +E+   ++  GY  + ++   D+ EE+KE A+++HSEKLA+AFG++ S  G 
Sbjct: 513 MDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGT 572

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            IRIVKNLR+C DCH   KL+S V+ RE+IVRD+ RFHHF+ G CSC DYW
Sbjct: 573 PIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 233/482 (48%), Gaps = 69/482 (14%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC---CSEKGDMKYA 68
           TL  + P +  +ETC  +  LK IH+  I+  ++ +    ++L+ FC    S    + YA
Sbjct: 13  TLRLKNPKLFSLETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYA 72

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            ++F +I  P++ ++N MI+G+S   +       Y+   +  + PDN TFPFL+K  T+ 
Sbjct: 73  SRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKL 132

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL-------------------------- 162
             +  G + H H++K GF+  V+VQN+L+  Y                            
Sbjct: 133 HCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMI 192

Query: 163 -----CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
                CG+V+ AR +FD   + ++VTW+ M SGY +   FD+  +LF  ++ +GV     
Sbjct: 193 RGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANET 252

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
            +V V+S+CA L  L++G+RAH YV +  +  NLIL  AL DMYA CG +  A+ +F ++
Sbjct: 253 VMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDL 312

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
             +D +SWTA++ G    G  + + +YF  M E                           
Sbjct: 313 PERDTLSWTALIAGLAMHGYSERSLKYFATMVE--------------------------- 345

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKC 396
               + + P + T  ++L+AC++ G +E G  +   + ++ +V+  +     ++D+  + 
Sbjct: 346 ----AGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRA 401

Query: 397 GDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           G +E+A+R   +M ++ +   W A++    I  H +  +      +   ++P    Y  +
Sbjct: 402 GKLEEAERFVLKMPVKPNAPVWGALLGACRI--HKNAEIGERVGKILIQLLPQHSGYYVL 459

Query: 456 LS 457
           LS
Sbjct: 460 LS 461


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 244/586 (41%), Positives = 380/586 (64%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K +H H+++      VF  + LIS       +D A  +F      ++  +N+   G+   
Sbjct: 32  KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGS 91

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
           K  D++   + + +R G++P ++T   ++ AC +   LD+G +AH  +       ++ ++
Sbjct: 92  KDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQ 151

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N+L  MY+  G++  A  +F  I   DV+SWT++V GYI  G V  AR+ FD+MPE++ V
Sbjct: 152 NSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLV 211

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W+ MI GY + + F +A+ L+  +Q+  +  +E  +VS++ +CA+LGALELGE    YI
Sbjct: 212 TWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYI 271

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            +NK+  ++ +G AL+DMY +CG ++KA  VF ++  +D  +WT +I G A++G+ +K+L
Sbjct: 272 LRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKAL 331

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           + FS+M +A + P E+T+  VLSAC+H G+V+ G E F  M   + IEP   HYGCMVDL
Sbjct: 332 EYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDL 391

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L EA + +  MPMKPN+ +WGALLGACR+H+++E+AE A K ++EL P++   Y
Sbjct: 392 LGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYY 451

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL NIYA  N+W+N   +RQM+ +RG+ K PG ++ EM+G VH+F  GDK+HP+ ++I 
Sbjct: 452 VLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIE 511

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
              +E+   ++  GY  +  +   D+ EE+KE  +++HSEKLA+A+ ++ +     IRIV
Sbjct: 512 RMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIV 571

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+C DCH   KL+S VY+RE+IVRD+ RFHHFK G+CSC DYW
Sbjct: 572 KNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 221/442 (50%), Gaps = 65/442 (14%)

Query: 13  LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           L  + P +S +E+C ++  LK IH+  I+   + +    + L++   + K  + YA +VF
Sbjct: 12  LELKNPKLSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISIN-KNLLDYAAQVF 70

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
            +I  P++ ++N+ I+G+S           Y+   ++ + PDN T+PFL+K  T+  +++
Sbjct: 71  YQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLD 130

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTY-----------------CL------------- 162
            G + H  +++ GFDS V+VQN+L++ Y                 CL             
Sbjct: 131 MGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYI 190

Query: 163 -CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221
             G+V  AR +FD   + ++VTW+ M SGY +   FD+  +L+  ++ +GV      +V 
Sbjct: 191 KSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVS 250

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           V+++CA L  L++G+RAH Y+   K+  NLIL  AL DMYA CG +  A+ +F  +  +D
Sbjct: 251 VIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRD 310

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
            +SWT ++ G+   G  + A +YF +                               M+ 
Sbjct: 311 ALSWTTLIAGFAMHGYAEKALEYFSR-------------------------------MEK 339

Query: 342 SNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
           + + P E T  ++L+AC++ G +E G E  ++     +++  +     ++D+  + G + 
Sbjct: 340 AGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLA 399

Query: 401 KAQRVFREM-LRKDKFTWTAMI 421
           +A++   EM ++ +   W A++
Sbjct: 400 EAEKFVNEMPMKPNAPIWGALL 421


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/558 (45%), Positives = 365/558 (65%), Gaps = 4/558 (0%)

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G +  AR +F+        T N++  GY       +    +  M  +G+ P   T   + 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            +C  L +   GK+ H +  +     +  ++N L +MY+ CG +  A ++F  + NK V+
Sbjct: 86  KSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 142

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           SW  ++  Y        A + F +M    +   W  MI+G++  + + EAL+LF EMQ S
Sbjct: 143 SWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 202

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
            ++ D+ T+ S+L AC +LGALELG+W+  YI+K K++ D+ +G AL+DMY KCG +E A
Sbjct: 203 GVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESA 262

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
            RVF+EM  KD  TWTA+IVGLA+ G G K+L++F +M  + + PD +T+VGVL+AC+H 
Sbjct: 263 MRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHA 322

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G+V+EG  YF  M  ++GI+P+  HYGCMVD+LGRAG + EA ++I+NMPM P+  V   
Sbjct: 323 GLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVG 382

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL ACR+H +  +AE AA+Q++ELDP N   YVLL NIY++   W+  +++R+++++R I
Sbjct: 383 LLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNI 442

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK PGCS IE+ GVVHEFV GD SHPQ+ EIY  LD+M   LK  GY+PD SEV  D+ E
Sbjct: 443 KKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDE 502

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           ++KE  +  HSEKLA+AFGL+S+ PG  IR+VKNLR+C DCH   K +S VY+RE+IVRD
Sbjct: 503 KEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRD 562

Query: 703 KTRFHHFKHGSCSCKDYW 720
           + RFHHF  GSCSC+D+W
Sbjct: 563 RNRFHHFTKGSCSCRDFW 580



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 197/421 (46%), Gaps = 69/421 (16%)

Query: 44  LLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLI 102
           L  +P   +K+V FC   + G + YA  VF +IP P+    N++I+GY+  +  +  +L 
Sbjct: 6   LFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILF 65

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           Y  M+   + PD +TFP L K  +  +  E GK+LHCH  K GF S  ++QN L++ Y  
Sbjct: 66  YQLMMLQGLDPDRFTFPSLFK--SCGVLCE-GKQLHCHSTKLGFASDAYIQNTLMNMYSN 122

Query: 163 CGEVDMARGIFDVSYKDDVVT--------------------------------WNAMFSG 190
           CG +  AR +FD      VV+                                WN M +G
Sbjct: 123 CGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMING 182

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           +     ++E   LF EM+  GV    VT+  +L AC  L  L++GK  H Y+++ KI  +
Sbjct: 183 HVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVD 242

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           + L  AL DMYA CG +  A+ +F  +  KDV++WTA++ G    GQ             
Sbjct: 243 VALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQ------------- 289

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EW 369
                               +AL LF EMQ S ++PD  T V +L AC++ G +  G  +
Sbjct: 290 ------------------GLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAY 331

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
             +  +K  ++  I     ++DM  + G + +A+ + + M +  D F    ++    I+G
Sbjct: 332 FNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHG 391

Query: 429 H 429
           +
Sbjct: 392 N 392


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 289/768 (37%), Positives = 422/768 (54%), Gaps = 72/768 (9%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           +E C SM +L Q     IK GL +    Q KLV+  C + G +  A +VF+ I      L
Sbjct: 84  LELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFC-KFGSLHEAARVFQPIEDKIDEL 142

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           ++TM+KGY+R  S  + V  +  M    VRP  Y F +LLK    +  +  GKE+HC ++
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI 202

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
             GF S+VF    +++ Y  C  V+ A  +FD   + D+V WN + SGY +        +
Sbjct: 203 VNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALE 262

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           L   M+ +G  P S+TIV +L A A +  L +G+  H Y         + +  AL DMY+
Sbjct: 263 LVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYS 322

Query: 263 AC-------------------------------GEMGFALEIF----------------- 274
            C                               G+ G A+EIF                 
Sbjct: 323 KCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMG 382

Query: 275 --------GNIKN--------------KDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
                   G+++                DV    ++++ Y    +VD+A + F+ +  + 
Sbjct: 383 ALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKT 442

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W AMI GY +  R  EA+  F +MQ  NI+PD FT+VS++ A A L  L   +W+  
Sbjct: 443 LVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHG 502

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            + +  +  ++FV  AL+DMY KCG V  A+++F  M  +   TW AMI G   +G G  
Sbjct: 503 LVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKA 562

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L++F +M +  I P+EVT++ VLSAC+H+G+V+EG +YF  M   +G+EP   HYG MV
Sbjct: 563 ALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMV 622

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGRA  LNEA + I+ MP++P   V+GA+LGACR+H++ E+ E AA +I +LDPD+  
Sbjct: 623 DLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGG 682

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            +VLL NIYA  + WD    +R  +  +GI+KTPG S++E+   VH F +G  SHPQ K+
Sbjct: 683 YHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKK 742

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY  L+ + + +K  GYMPD + V  DV +  KE+ +  HSEKLA+AF L+++ PG TI 
Sbjct: 743 IYAFLETLGNRIKAAGYMPDTNSVH-DVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIH 801

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + KNLR+C DCH   K +S+V  RE+IVRD  RFHHFK G+CSC DYW
Sbjct: 802 LRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/705 (39%), Positives = 396/705 (56%), Gaps = 35/705 (4%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            +S +  C S   L   +++H + ++ GL  N TV N L++   ++ G ++ A +VF  +
Sbjct: 148 FVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMY-AKCGSVRDARRVFDAM 206

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  W T+   Y+     +  +  Y  ML+  VRP   T+  +L       A+E GK
Sbjct: 207 ASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGK 266

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  +++    S V V  AL   Y  CG V  AR +F+     DV+ WN M  G     
Sbjct: 267 QIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSG 326

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           Q +E   +F  M ++ V P  VT + +LSACA+   L  GK  H    +  +V ++   N
Sbjct: 327 QLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGN 386

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           AL +MY+  G M            KD                   ARQ FD+MP+RD V 
Sbjct: 387 ALINMYSKAGSM------------KD-------------------ARQVFDRMPKRDVVS 415

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           WTA++ GY    +  E+ + F++M    +  ++ T + +L AC+N  AL+ G+ +   + 
Sbjct: 416 WTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVV 475

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
           K  +  D+ V NAL+ MY KCG VE A RV   M  +D  TW  +I GLA NG G ++L 
Sbjct: 476 KAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQ 535

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
            F  M    + P+  T+V V+SAC    +V+EGR  FA M   +GI P E HY CMVD+L
Sbjct: 536 KFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDIL 595

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
            RAGHL EA +VI  MP KP++ +WGALL ACR H + E+ E AA+Q L+L+P N   YV
Sbjct: 596 ARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYV 655

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
            L  IYAA   W +  +LR+++ +RG+KK PG S IE+ G VH FVAGD+SHP+T+EIY 
Sbjct: 656 SLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYS 715

Query: 616 KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
           +L+ +T  +K +GY+PD   V  D+ +E KERAV  HSEKLA+A+GLIS+ P   IR+ K
Sbjct: 716 ELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSK 775

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH   K +S +  RE+I RD  RFHHFK+G CSC DYW
Sbjct: 776 NLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 213/427 (49%), Gaps = 35/427 (8%)

Query: 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
           VL YL    S V  D+Y +  LL+   +   +  GK++H H+L+FG   +V++ N L+  
Sbjct: 31  VLQYLHQKGSQV--DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKL 88

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
           Y  CG V+ AR +FD      VV+WN M SGY       E   LF  M+++G+ P   T 
Sbjct: 89  YVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTF 148

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
           V +LSAC+    L+ G+  H  V E  +  N  + NAL  MYA CG +  A  +F  + +
Sbjct: 149 VSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMAS 208

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           +D +SWT +   Y   G                                 +E+L  +  M
Sbjct: 209 RDEVSWTTLTGAYAESGYA-------------------------------QESLKTYHAM 237

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
               +RP   T +++L+AC +L ALE G+ +   I +++  +D+ V  AL  MY KCG V
Sbjct: 238 LQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAV 297

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           + A+ VF  +  +D   W  MI GL  +G  +++  MF +ML+  + PD VTY+ +LSAC
Sbjct: 298 KDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSAC 357

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
              G +  G+E  A   ++ G+  +      ++++  +AG + +A +V   MP K + + 
Sbjct: 358 ARPGGLACGKEIHA-RAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVS 415

Query: 520 WGALLGA 526
           W AL+G 
Sbjct: 416 WTALVGG 422


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 288/775 (37%), Positives = 420/775 (54%), Gaps = 80/775 (10%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L++ I    +   L + H+Q I+ G   +     KL T    + G  ++A  +F  +P+P
Sbjct: 11  LLALISKACTFPHLAETHAQLIRNGYQHDLATVTKL-TQKLFDVGATRHARALFFSVPKP 69

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            + L+N +IKG+S      + +  Y  +LK + + PDN+T+ F +     D     G  L
Sbjct: 70  DIFLFNVLIKGFS-FSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDD---NLGMCL 125

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H H +  GFDS++FV +AL+  YC    V  AR +FD     D V WN M +G  R   +
Sbjct: 126 HAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCY 185

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD-----------LDVGKRAHRYV---- 242
           D++ ++F +M  +GV   S T+  VL A A++++           L +G     YV    
Sbjct: 186 DDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGL 245

Query: 243 ----KECKIV------------PNLILENALTDMYAACGEMGFALEIF------------ 274
                +C+ V            P+L+  NAL   ++  GE   A++ F            
Sbjct: 246 ISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSS 305

Query: 275 -----------------------------GNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
                                        G I    V   TA+ T Y    ++D+ARQ F
Sbjct: 306 STMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSV--STALTTIYSRLNEIDLARQLF 363

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
           D+  E+    W AMI GY +      A++LF+EM T+   P+  TI SIL+ACA LGAL 
Sbjct: 364 DESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALS 423

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            G+ V   I    ++ +I+V  ALIDMY KCG++ +A ++F     K+  TW  MI G  
Sbjct: 424 FGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYG 483

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           ++G+GD++L +F++ML     P  VT++ VL AC+H G+V EG E F  M  ++ IEP  
Sbjct: 484 LHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLA 543

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HY CMVD+LGRAG L +ALE I+ MP++P   VWG LLGAC +H+D  +A +A++++ E
Sbjct: 544 EHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFE 603

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           LDP N   YVLL NIY+    +     +R+ +  R + KTPGC++IE+NG  H FV GD+
Sbjct: 604 LDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDR 663

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           SH QT  IY KL+E+T  ++ +GY  +      DV EE+KE     HSEKLA+AFGLI++
Sbjct: 664 SHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITT 723

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            PG  IRI+KNLR+C+DCH   K +S + +R ++VRD  RFHHFK G CSC DYW
Sbjct: 724 EPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 137/304 (45%), Gaps = 6/304 (1%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           ST+    P+ SP      +H    I    +K G +  P+V   L T   S   ++  A +
Sbjct: 306 STMVGLIPVSSPFG---HLHLACCIQGFCVKSGTILQPSVSTALTTIY-SRLNEIDLARQ 361

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           +F +    +V  WN MI GY++    +  + ++ +M+ ++  P+  T   +L    +  A
Sbjct: 362 LFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGA 421

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           + FGK +H  +     + +++V  ALI  Y  CG +  A  +FD++ + + VTWN M  G
Sbjct: 422 LSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFG 481

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVP 249
           Y      DE  KLF EM   G  P+SVT + VL AC+    +  G    H  V + +I P
Sbjct: 482 YGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEP 541

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQM 308
                  + D+    G++  ALE    +        W  ++   +     ++AR   +++
Sbjct: 542 LAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERL 601

Query: 309 PERD 312
            E D
Sbjct: 602 FELD 605


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 274/693 (39%), Positives = 408/693 (58%), Gaps = 70/693 (10%)

Query: 52  NKLVTFCC-SEKGD-MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS 109
           ++L+ FC  S   D + YA  VF  IP P+  +WN M +G++      + + +Y+ M+  
Sbjct: 10  SQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISL 69

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
            + P+ +TFPFLLK   +    + G+++H HVLK GFD  ++V  +LIS Y   G ++ A
Sbjct: 70  GLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDA 129

Query: 170 RGIFD-------VSYK------------------------DDVVTWNAMFSGYKRVKQFD 198
           + +FD       VSY                          DVV+WNAM SGY     + 
Sbjct: 130 QKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYK 189

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           +  +LF EM +  V P   T+  V+SACA+   +++G++ H ++ +     NL + NAL 
Sbjct: 190 KALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALI 249

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           D+Y+ CGE+  A E+   + NK                               D + W  
Sbjct: 250 DLYSKCGEVETACELLEGLSNK-------------------------------DVISWNT 278

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN- 377
           +I GY  +N ++EAL LF+EM  S   P++ T++SIL ACA+LGA+++G W+  YIDK  
Sbjct: 279 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKL 338

Query: 378 ---KVKNDIFVGNALIDMYCKCGDVEKAQRVF-REMLRKDKFTWTAMIVGLAINGHGDKS 433
               V N   +  +LIDMY KCGD++ A +V       +   TW AMI G A++G  + +
Sbjct: 339 KGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAA 398

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
            D+FS+M +  I PD++T+VG+LSAC+H+GM+D GR  F  M   + I P   HYGCM+D
Sbjct: 399 FDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMID 458

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           LLG +G   EA E+I  MPM+P+ ++W +LL AC++H + E+ E  AK++++++P+N   
Sbjct: 459 LLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGS 518

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGI-KKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
           YVLL NIYA   +W+   ++R ++ D+G+ KK PGCS IE++ VVHEF+ GDK HPQ +E
Sbjct: 519 YVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNRE 578

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY  L+EM   L+  G++PD SEV  ++ EE KE A+  HSEKLA+AFGLIS+ PG  + 
Sbjct: 579 IYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 638

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           IVKNLR+C +CH   KL+S +Y RE+I RD+TR
Sbjct: 639 IVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 281/689 (40%), Positives = 400/689 (58%), Gaps = 34/689 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H    KLG  +  TV N L++F    +  ++ A K+F ++    V  WN+MI GY +
Sbjct: 271 RQVHGLICKLGFNSYNTVVNSLISFYFVGR-KVRCAQKLFDELTDRDVISWNSMISGYVK 329

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG-FDSSVF 151
                 G+ I++ ML   V  D  T   +         +  GK LH + +K    D  V 
Sbjct: 330 NGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVR 389

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
             N L+  Y  CG+++ A  +F+   +  VV+W +M +GY R    D   KLF EM+ +G
Sbjct: 390 FNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRG 449

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V+P    +  +L+ACA   +L  GK  H Y++E  +  N  + NALTDMYA CG M    
Sbjct: 450 VVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSM---- 505

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
                   KD                   A   F  M ++D + W  MI GY + +   E
Sbjct: 506 --------KD-------------------AHDVFSHMKKKDVISWNTMIGGYTKNSLPNE 538

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           ALTLF EMQ  + +PD  T+  IL ACA+L AL+ G  +  Y  +N    D +V NA++D
Sbjct: 539 ALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVD 597

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCG +  A+ +F  +  KD  +WT MI G  ++G+G ++++ F+QM    I PDEV+
Sbjct: 598 MYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVS 657

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           ++ +L AC+H+G++DEG + F  M  +  IEPN  HY CMVDLL R G+L +A + IK M
Sbjct: 658 FISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAM 717

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P+KP++ +WGALL  CR+H D ++AE  A++I EL+P+N   YVLL NIYA   +W+  +
Sbjct: 718 PIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQ 777

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
           +LR+ I  RG+KK PGCS IE+ G ++ FVAGD S PQ K+I L L  + S +K  GY P
Sbjct: 778 KLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSP 837

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
             +   L+  E +KE A+  HSEKLAMAFG+++  PG TIR+ KNLR+C DCH MAK +S
Sbjct: 838 KTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMS 897

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
               RE+I+RD +RFHHFK GSCSC+ YW
Sbjct: 898 KSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 34/304 (11%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L  CA+ K +  G+R    ++   ++ + IL   L  MY  CG++     +F       
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVF------- 208

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
                                   D++ E    LW  MI  Y     + E++ LF++M  
Sbjct: 209 ------------------------DKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLE 244

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             I+P+ +T  SIL   A +  +E G  V   I K    +   V N+LI  Y     V  
Sbjct: 245 LGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRC 304

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           AQ++F E+  +D  +W +MI G   NG  D+ +++F +ML   +  D  T V V  AC +
Sbjct: 305 AQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACAN 364

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHY-GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
            G +  G+      +I+      E  +   ++D+  + G LN A+ V + M  K   + W
Sbjct: 365 IGTLLLGK-VLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEK-TVVSW 422

Query: 521 GALL 524
            +++
Sbjct: 423 TSMI 426



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 2/148 (1%)

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           +  V   + A+ L    Q SN   D     SIL  CA   ++  G  V++ I+ + V  D
Sbjct: 127 FCEVGDLKNAMELLCSSQNSNF--DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMID 184

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
             +G  L+ MY KCGD+++ + VF ++     F W  MI   + +G+  +S+++F QML 
Sbjct: 185 GILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLE 244

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGRE 470
             I P+  T+  +L        V+EGR+
Sbjct: 245 LGIKPNSYTFSSILKCFAAVARVEEGRQ 272


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  527 bits (1357), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/697 (37%), Positives = 416/697 (59%), Gaps = 37/697 (5%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           ++ G++  A +VF +IP+P    W TMI GY+ +   K+ V  +L M+ S + P  +TF 
Sbjct: 90  AKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFT 149

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L       A++ GK++H  V+K G    V V N+L++ Y  CG+  MA+ +FD     
Sbjct: 150 NVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLK 209

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-------------------------- 213
           D  TWN M S + +  QFD    LF +M    ++                          
Sbjct: 210 DTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFML 269

Query: 214 ------PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
                 P   T+  VLSACA  + L +GK+ H ++    +     + NAL  MYA  G +
Sbjct: 270 KSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAV 329

Query: 268 GFA---LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
             A   +EI G   + +VI++T+++ GY   G +D AR  FD +  RD V WTAMI GY 
Sbjct: 330 EVAHRIVEITGT-PSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYA 388

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
           +     +AL LFR M     +P+ +T+ ++L+  ++L +L+ G+ +     + +  + + 
Sbjct: 389 QNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVS 448

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLR-KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
           VGNALI MY + G ++ A+++F  +   +D  TWT+MI+ LA +G G++++++F +MLR 
Sbjct: 449 VGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRI 508

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
           ++ PD +TYVGVLSACTH G+V++G+ YF  M   H IEP  +HY CM+DLLGRAG L E
Sbjct: 509 NLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEE 568

Query: 504 ALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563
           A   I+NMP++P+ + WG+LL +CRVH+  ++A++AA+++L +DP+N   Y+ L N  +A
Sbjct: 569 AYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSA 628

Query: 564 CNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSD 623
           C +W++  ++R+ + D+ +KK  G S +++   VH F   D  HPQ   IY  + ++  +
Sbjct: 629 CGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKE 688

Query: 624 LKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDC 683
           +K +G++PD + V  D+ +E KE+ +  HSEKLA+AF LI++    T+RI+KNLR+C DC
Sbjct: 689 IKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDC 748

Query: 684 HRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           H   + +S++ +RE+IVRD TRFHHFK GSCSC+DYW
Sbjct: 749 HSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 132/457 (28%), Positives = 220/457 (48%), Gaps = 47/457 (10%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           + F  N ++S +   G +D AR +FD   + D V+W  M  GY  +  F      F  M 
Sbjct: 78  TTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMV 137

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV---KECKIVPNLILENALTDMYAACG 265
             G+ PT  T   VL++CA  + LDVGK+ H +V    +  +VP   + N+L +MYA CG
Sbjct: 138 SSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVP---VANSLLNMYAKCG 194

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
           +   A  +F  ++ KD  +W  +++ ++   Q D+A   FDQM + D V W ++I GY  
Sbjct: 195 DSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCH 254

Query: 326 VNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
                 AL  F  M ++S+++PD+FT+ S+L+ACAN  +L+LG+ +  +I +  V     
Sbjct: 255 QGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGA 314

Query: 385 VGNALIDMYCKCGDVEKAQR---------------------------------VFREMLR 411
           VGNALI MY K G VE A R                                 +F  +  
Sbjct: 315 VGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKH 374

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           +D   WTAMIVG A NG    +L +F  M+R    P+  T   VLS  +    +D G++ 
Sbjct: 375 RDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQL 434

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH- 530
            A + I+     + +    ++ +  R+G + +A ++  ++    +++ W +++ +   H 
Sbjct: 435 HA-VAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHG 493

Query: 531 RDAEMAEMAAKQI-LELDPDNEAVYVLLCNIYAACNR 566
              E  E+  K + + L PD    ++    + +AC  
Sbjct: 494 LGNEAIELFEKMLRINLKPD----HITYVGVLSACTH 526



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 156/345 (45%), Gaps = 38/345 (11%)

Query: 220 VLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           V +L +  K +D  +G+  H R +K       + L N L ++Y   G    A  +F  + 
Sbjct: 16  VHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMP 75

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
            K   SW  I++ +   G +D AR+ FD++P+ D V WT MI GY  +  F+ A+  F  
Sbjct: 76  LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M +S I P +FT  ++L +CA   AL++G+ V +++ K      + V N+L++MY KCGD
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
              A+ VF  M  KD  TW  MI         D +L +F QM      PD V++  +++ 
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTD----PDIVSWNSIITG 251

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
             H G      E F+ M                                +K+  +KP+  
Sbjct: 252 YCHQGYDIRALETFSFM--------------------------------LKSSSLKPDKF 279

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPD-NEAVYVLLCNIYA 562
             G++L AC      ++ +     I+  D D   AV   L ++YA
Sbjct: 280 TLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYA 324



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 22/226 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI-PR 77
           ++S I +  S+   KQ+H+  I+L  +++ +V N L+T   S  G +K A K+F  I   
Sbjct: 418 VLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITM-YSRSGSIKDARKIFNHICSY 476

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
                W +MI   ++       + ++  ML+ +++PD+ T+  +L   T    VE GK  
Sbjct: 477 RDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSY 536

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY--------KDDVVTWNAMFS 189
                 F    +V       S Y    ++    G+ + +Y        + DVV W ++ S
Sbjct: 537 ------FNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLS 590

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTS----VTIVLVLSACAKLKD 231
              RV ++ +  K+  E +   + P +    + +   LSAC K +D
Sbjct: 591 SC-RVHKYVDLAKVAAE-KLLLIDPNNSGAYLALANTLSACGKWED 634


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/586 (45%), Positives = 379/586 (64%), Gaps = 11/586 (1%)

Query: 145 GFDSSVFVQNALI--STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           GF S  F  + L+  ST      +D +  IFD     +   WN M   Y +    ++   
Sbjct: 56  GFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALL 115

Query: 203 LFGEMERKGVLPTSVTIVLVLSACA-KLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
           L+  M +  V P + T  LV+ ACA +L +   GK  H +V +     ++ ++N L +MY
Sbjct: 116 LYKLMVKNNVGPDNYTYPLVVQACAVRLLEFG-GKEIHDHVLKVGFDSDVYVQNTLINMY 174

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG---QVDMARQYFDQMPERDYVLWTA 318
           A CG M  A ++F      D +SW +I+ GY+ +G   QV  A + F++M E+D V W+A
Sbjct: 175 AVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSA 234

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           +I GY +   + EAL +F EM  + +R DE  +VS+L+ACA+L  ++ G+ +   + +  
Sbjct: 235 LISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMG 294

Query: 379 VKNDIFVGNALI----DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           +++ + + NALI    DMY KCG VE A  VF  M  K   +W A+I+GLA+NG  ++SL
Sbjct: 295 IESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSL 354

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           DMFS+M    +IP+E+T++GVL AC H G+VDEGR +FA M  +HGIEPN  HYGCMVDL
Sbjct: 355 DMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDL 414

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG LNEA ++I++MPM P+   WGALLGAC+ H D EM E   ++++EL PD++  +
Sbjct: 415 LGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFH 474

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL NI+A+   W++  E+R M+  +G+ KTPGCS+IE NGVVHEF+AGDK+HP   ++ 
Sbjct: 475 VLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVE 534

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L+EM   LK  GY PD +EV LD+ EE+KE  +++HSEKLA+AFGL++  P   IRI+
Sbjct: 535 GMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIM 594

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+C DCH  AKL+S  Y RE++VRD+ RFH+FK G+CSC DYW
Sbjct: 595 KNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 231/470 (49%), Gaps = 77/470 (16%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGD 64
           +  P  TL+    L + +  C ++ Q  +I SQ I  G +++    ++L+ F   S    
Sbjct: 22  TFKPTITLS---ILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIG 78

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + Y+ ++F +I   +  +WNTM++ Y + +S +  +L+Y  M+K++V PDNYT+P +++ 
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------VSY 177
               +    GKE+H HVLK GFDS V+VQN LI+ Y +CG +  AR +FD       VS+
Sbjct: 139 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 198

Query: 178 ---------------------------KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
                                      + D+V+W+A+ SGY++   ++E   +F EM   
Sbjct: 199 NSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNAN 258

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL----TDMYAACGE 266
           G+    V +V VLSACA L  +  GK  H  V    I   + L+NAL    +DMY  CG 
Sbjct: 259 GMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGC 318

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +  ALE+F  ++ K V SW A++ G    G V+                           
Sbjct: 319 VENALEVFNGMEEKGVSSWNALIIGLAVNGLVE--------------------------- 351

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFV 385
                +L +F EM+ + + P+E T + +L AC ++G ++ G     + I+K+ ++ ++  
Sbjct: 352 ----RSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKH 407

Query: 386 GNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSL 434
              ++D+  + G + +A+++   M +  D  TW A++   A   HGD  +
Sbjct: 408 YGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLG--ACKKHGDTEM 455


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/694 (38%), Positives = 401/694 (57%), Gaps = 33/694 (4%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S+ Q +++H+  +K G+  N  ++N L++   ++ G +  A +VF  I   ++  W  MI
Sbjct: 62  SLEQGREVHAAILKSGIQPNRYLENTLLSMY-AKCGSLTDARRVFDSIRDRNIVSWTAMI 120

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           + +   + +      Y  M  +  +PD  TF  LL  FT    ++ G+++H  +++ G +
Sbjct: 121 EAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLE 180

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
               V  +L+  Y  CG++  AR IFD   + +VVTW  + +GY +  Q D   +L   M
Sbjct: 181 LEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETM 240

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           ++  V P  +T   +L  C     L+ GK+ HRY+ +      L + N+L  MY  CG +
Sbjct: 241 QQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGL 300

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
                                          + AR+ F  +P RD V WTAM+ GY ++ 
Sbjct: 301 -------------------------------EEARKLFSDLPHRDVVTWTAMVTGYAQLG 329

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
              EA+ LFR MQ   I+PD+ T  S+LT+C++   L+ G+ +   +       D+++ +
Sbjct: 330 FHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQS 389

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL-AINGHGDKSLDMFSQMLRASII 446
           AL+ MY KCG ++ A  VF +M  ++   WTA+I G  A +G   ++L+ F QM +  I 
Sbjct: 390 ALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIK 449

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD+VT+  VLSACTH G+V+EGR++F  M + +GI+P   HY C VDLLGRAGHL EA  
Sbjct: 450 PDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAEN 509

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
           VI +MP  P   VWGALL ACRVH D E  E AA+ +L+LDPD++  YV L +IYAA  R
Sbjct: 510 VILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGR 569

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           +++  ++RQ++  R + K PG S IE++G VH F   DKSHP++++IY++L ++T  +K 
Sbjct: 570 YEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKE 629

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
           +GY+PD   V  DV EE KER ++ HSE+LA+ +GL+ + PG+ IRIVKNLR+C DCH  
Sbjct: 630 MGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTA 689

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            K +S V  RE+I RD  RFHHF  G CSC D+W
Sbjct: 690 TKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 238/496 (47%), Gaps = 48/496 (9%)

Query: 97  KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
           K  + I   M+    R  +  F  LL+   R  ++E G+E+H  +LK G   + +++N L
Sbjct: 29  KEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 88

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           +S Y  CG +  AR +FD     ++V+W AM   +    +  E  K +  M+  G  P  
Sbjct: 89  LSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDK 148

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
           VT V +L+A    + L +G++ H  + E  +     +  +L  MYA CG++  A  IF  
Sbjct: 149 VTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDR 208

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           +  K+V++WT ++ GY  +GQVD+                               AL L 
Sbjct: 209 LPEKNVVTWTLLIAGYAQQGQVDV-------------------------------ALELL 237

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
             MQ + + P++ T  SIL  C    ALE G+ V  YI ++    +++V N+LI MYCKC
Sbjct: 238 ETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKC 297

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G +E+A+++F ++  +D  TWTAM+ G A  G  D+++++F +M +  I PD++T+  VL
Sbjct: 298 GGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVL 357

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           ++C+    + EG+     + +  G   +      +V +  + G +++A  V   M  + N
Sbjct: 358 TSCSSPAFLQEGKRIHQQL-VHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSER-N 415

Query: 517 SIVWGALLGAC-----RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR----W 567
            + W A++  C     R     E  +   KQ   + PD     V   ++ +AC       
Sbjct: 416 VVAWTAIITGCCAQHGRCREALEYFDQMKKQ--GIKPDK----VTFTSVLSACTHVGLVE 469

Query: 568 DNFRELRQMILDRGIK 583
           +  +  R M LD GIK
Sbjct: 470 EGRKHFRSMYLDYGIK 485



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 108/228 (47%), Gaps = 4/228 (1%)

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
           +  R +EAL +   M     R        +L  CA L +LE G  V   I K+ ++ + +
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           + N L+ MY KCG +  A+RVF  +  ++  +WTAMI          ++   +  M  A 
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
             PD+VT+V +L+A T+  ++  G++   ++ ++ G+E        +V +  + G +++A
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEI-VEAGLELEPRVGTSLVGMYAKCGDISKA 202

Query: 505 LEVIKNMPMKPNSIVWGALLG--ACRVHRDAEMAEMAAKQILELDPDN 550
             +   +P K N + W  L+   A +   D  +  +   Q  E+ P+ 
Sbjct: 203 RVIFDRLPEK-NVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNK 249


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/774 (36%), Positives = 436/774 (56%), Gaps = 74/774 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            ++ +    ++ QL QI +Q I  G+  + +   KL T    + G + +  ++F K+ +P
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKL-THKFFDLGAVAHVRQLFNKVSKP 75

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            + L+N +I+G+S     K+ + +Y  + K +++RPDN+T+ F +   +R      G  L
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H H +  G  S++FV +A++  Y      ++AR +FDV  + D V WN M SG+ R   F
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG---------KRAHRYV------ 242
           +++ ++F +M   G+   S T+  VL+A A+L++  +G         K  H  V      
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 243 --------KECK--IV------PNLILENALTDMYAACGEMGFALEIF------GNIKNK 280
                   K CK  I+      P+LI  NA+   Y    E   A+ +F      G   N 
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 281 DVISW---------------------------------TAIVTGYINRGQVDMARQYFDQ 307
             +                                   TA+ T Y    +V  ARQ FD+
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
            PE+    W AMI GY +      A++LF+EM    + P+  T+ SIL+ACA LGAL +G
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQLGALSIG 434

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           +WV   I   +++++++V  AL+DMY KCG + +A+++F  M+ K+  TW AMI G  ++
Sbjct: 435 KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLH 494

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           GHG ++L +F +ML++ I P  VT++ +L AC+H+G+V EG E F  M   +G +P   H
Sbjct: 495 GHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEH 554

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y CMVD+LGRAG L  ALE I+ MP++P   VWGALLGAC +H++ EMA +A+K++ +LD
Sbjct: 555 YACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLD 614

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P+N   YVLL NIY+    +     +RQ++  R + KTPGC++IE++   + F +GD+SH
Sbjct: 615 PENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSH 674

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPD-ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           PQ   I+  L+++T  ++  GY  + ++    DV +E+KE  V  HSEKLA+AFGLIS+ 
Sbjct: 675 PQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTK 734

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           PG  IRI+KNLR+C+DCH   K +S + +R ++VRD  RFHHFK+G CSC DYW
Sbjct: 735 PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/774 (36%), Positives = 436/774 (56%), Gaps = 74/774 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            ++ +    ++ QL QI +Q I  G+  + +   KL T    + G + +  ++F K+ +P
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKL-THKFFDLGAVAHVRQLFNKVSKP 75

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            + L+N +I+G+S     K+ + +Y  + K +++RPDN+T+ F +   +R      G  L
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H H +  G  S++FV +A++  Y      ++AR +FDV  + D V WN M SG+ R   F
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG---------KRAHRYV------ 242
           +++ ++F +M   G+   S T+  VL+A A+L++  +G         K  H  V      
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 243 --------KECK--IV------PNLILENALTDMYAACGEMGFALEIF------GNIKNK 280
                   K CK  I+      P+LI  NA+   Y    E   A+ +F      G   N 
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 281 DVISW---------------------------------TAIVTGYINRGQVDMARQYFDQ 307
             +                                   TA+ T Y    +V  ARQ FD+
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
            PE+    W AMI GY +      A++LF+EM    + P+  T+ SIL+ACA LGAL +G
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQLGALSIG 434

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           +WV   I   +++++++V  AL+DMY KCG + +A+++F  M+ K+  TW AMI G  ++
Sbjct: 435 KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLH 494

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           GHG ++L +F +ML++ I P  VT++ +L AC+H+G+V EG E F  M   +G +P   H
Sbjct: 495 GHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEH 554

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y CMVD+LGRAG L  ALE I+ MP++P   VWGALLGAC +H++ EMA +A+K++ +LD
Sbjct: 555 YACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLD 614

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P+N   YVLL NIY+    +     +RQ++  R + KTPGC++IE++   + F +GD+SH
Sbjct: 615 PENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSH 674

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPD-ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           PQ   I+  L+++T  ++  GY  + ++    DV +E+KE  V  HSEKLA+AFGLIS+ 
Sbjct: 675 PQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTK 734

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           PG  IRI+KNLR+C+DCH   K +S + +R ++VRD  RFHHFK+G CSC DYW
Sbjct: 735 PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/716 (36%), Positives = 427/716 (59%), Gaps = 17/716 (2%)

Query: 21  SPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S ++ C  ++ L+   Q+H+Q +  G+     + ++L+   C + G ++ A ++F K+  
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYC-QTGCVEDARRMFDKMSE 73

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            +V  W  +++ Y  +  ++  + ++  M+   VRPD++ FP + K  +       GK++
Sbjct: 74  RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 133

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           + ++L  GF+ +  V+ +++  +  CG +D+AR  F+     DV  WN M SGY    +F
Sbjct: 134 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF 193

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECKIVPNLILENA 256
            +   +F +M  +GV P S+TI   +SAC  L  L  G+  H Y +K  ++  +L++ N+
Sbjct: 194 KKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNS 253

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAI--VTGYINRGQVDMARQYFDQM------ 308
           L D YA C  +  A   FG IK  D++SW A+  VTG+   G    A ++F +M      
Sbjct: 254 LVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSV 313

Query: 309 ----PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                 RD V+W ++I    +  R   AL L REM  SN+  +  T+VS L AC+ L AL
Sbjct: 314 FSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAAL 373

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
             G+ +  +I +  +    F+ N+LIDMY +CG ++K++R+F  M ++D  +W  MI   
Sbjct: 374 RQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVY 433

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
            ++G G  ++++F Q     + P+ +T+  +LSAC+H+G+++EG +YF  M  ++ ++P 
Sbjct: 434 GMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPA 493

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
              Y CMVDLL RAG  NE LE I+ MP +PN+ VWG+LLGACR+H + ++AE AA+ + 
Sbjct: 494 VEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLF 553

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           EL+P +   YVL+ NIY+A  RW++  ++R ++ +RG+ K PGCS IE+   +H FV GD
Sbjct: 554 ELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 613

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
            SHP  ++I  K++ +  D+K +GY+PD + V  DV E++KE ++  HSEK+A+AFGLIS
Sbjct: 614 TSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLIS 673

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  G  +RI+KNLR+C DCH   K +S V  R++I+RD  RFHHF  G CSC DYW
Sbjct: 674 TTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/525 (48%), Positives = 352/525 (67%), Gaps = 4/525 (0%)

Query: 200 TRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           + ++F  M R  G LP   T V V  AC     +  G++   +  +  +  NL + NA+ 
Sbjct: 15  SMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMI 74

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
            MYA  G +  A  +F    ++D+ SW  ++ GY+  G++  A++ FD+M ERD V WT 
Sbjct: 75  RMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTT 134

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           +I GY++V  F+EAL LF EM  +   P+EFT+ S L ACANL AL+ G W+  YIDK++
Sbjct: 135 IIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSE 194

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREM--LRKDKFTWTAMIVGLAINGHGDKSLDM 436
           +K +  +  +L+DMY KCG+++ A +VF +   L+   + W AMI G A++G   +++D+
Sbjct: 195 IKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDL 254

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F QM    + P++VT+V +L+AC+H  +V+EGR YF  M   +GIEP   HYGCMVDLLG
Sbjct: 255 FEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLG 314

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R+G L EA E + NMPM P++ +WGALLGACR+H+D E  +   K I ELD D+   +VL
Sbjct: 315 RSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVL 374

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L N+Y+A  +WD  + +RQ I   G KKTPGCS IE+NGV H+F+ GD+SHPQTK++YL 
Sbjct: 375 LANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLF 434

Query: 617 LDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
           LDEMT+ LK  GY+P+  EV LD+  EEDKE A+ +HSEKLA+AFGLI++ PG  IRIVK
Sbjct: 435 LDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVK 494

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH   K +S VY RE+IVRD+ R+HHFK G CSCKDYW
Sbjct: 495 NLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 173/374 (46%), Gaps = 70/374 (18%)

Query: 86  MIKGYSRI-DSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           MIK ++ I  S  N + I+L M++ S   P+ YTF F+ K     + V  G+++  H +K
Sbjct: 1   MIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIK 60

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY------KRVKQ- 196
            G +S++FV NA+I  Y   G VD AR +FD S   D+ +WN M  GY       R K+ 
Sbjct: 61  IGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEM 120

Query: 197 ------------------------FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
                                   F E   LF EM + G  P   T+   L+ACA L  L
Sbjct: 121 FDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVAL 180

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN---IKNKDVISWTAIV 289
           D G+  H Y+ + +I  N  L  +L DMYA CGE+ FA ++F +   +K K V  W A++
Sbjct: 181 DQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMI 239

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
            GY   G                               + +EA+ LF +M+   + P++ 
Sbjct: 240 GGYAMHG-------------------------------KSKEAIDLFEQMKVEKVSPNKV 268

Query: 350 TIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR-VFR 407
           T V++L AC++   +E G  + K+      ++ +I     ++D+  + G +++A+  VF 
Sbjct: 269 TFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFN 328

Query: 408 EMLRKDKFTWTAMI 421
             +  D   W A++
Sbjct: 329 MPMAPDATIWGALL 342



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 9/244 (3%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G++  A ++F ++    V  W T+I GY ++   K  + ++ +ML++   P+ +T    L
Sbjct: 112 GEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASAL 171

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY--KDD 180
                 +A++ G+ +H ++ K     +  +  +L+  Y  CGE+D A  +F   Y  K  
Sbjct: 172 AACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK 231

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           V  WNAM  GY    +  E   LF +M+ + V P  VT V +L+AC+  K ++ G+   +
Sbjct: 232 VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFK 291

Query: 241 YVKEC-KIVPNLILENALTDMYAACGEMGFALE-IFGNIKNKDVISWTAIVTGY-----I 293
            +     I P +     + D+    G +  A E +F      D   W A++        I
Sbjct: 292 SMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDI 351

Query: 294 NRGQ 297
            RGQ
Sbjct: 352 ERGQ 355


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/546 (45%), Positives = 349/546 (63%), Gaps = 9/546 (1%)

Query: 184 WNAMFSGY--KRVKQFDETRK---LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           WN +   +   R +    T     +F  M   GV P   T   +L + A    L +G+  
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H  +    +  +  ++ +L  MY++CG +GFA ++F  I   D+ SW +I+      G V
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLV 146

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ---TSNIRPDEFTIVSIL 355
           DMAR  F  MPER+ + W+ MI+GY+R  +++EAL LFREMQ    +++RP+EFT+  +L
Sbjct: 147 DMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVL 206

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
            AC  LGALE G+W   YIDK  +  D+ +G ALIDMY KCG VEKA  VF  +   KD 
Sbjct: 207 AACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDV 266

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
             W+AMI GLA++G  ++ + +FS+M+   + P+ VT++ V  AC H G+V EG++Y   
Sbjct: 267 MAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRR 326

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           MT  + I P   HYGCMVDL GRAG + EA  V+K+MPM+P+ +VWGALL   R+H D E
Sbjct: 327 MTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 386

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
             E+A K+++EL+P N   YVLL N+YA   RW++ R +R ++   GIKK PGCS+IE+ 
Sbjct: 387 TCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVG 446

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
           GV+HEF  GD SHP+T++I++ L+E+   LK  GY+ +  EV LD+ EE KE A+  HSE
Sbjct: 447 GVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSE 506

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           KLA+A+G + + PG  IRIVKNLR+C DCH   K++S V+DRE+IVRD  RFHHF  G C
Sbjct: 507 KLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLC 566

Query: 715 SCKDYW 720
           SC+DYW
Sbjct: 567 SCRDYW 572



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 185/392 (47%), Gaps = 75/392 (19%)

Query: 82  LWNTMIKGYSRIDSHKNG-----VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           LWNT+I+ + +  +   G     + I++ M    V+PD +TFPFLL+ F     +  G+ 
Sbjct: 26  LWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRS 85

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGE------------------------------- 165
           +H  +L+FG     FVQ +LIS Y  CG                                
Sbjct: 86  VHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGL 145

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG---VLPTSVTIVLV 222
           VDMAR +F V  + +V++W+ M +GY R  Q+ E   LF EM+  G   V P   T+  V
Sbjct: 146 VDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGV 205

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI-KNKD 281
           L+AC +L  L+ GK AH Y+ +C +  +++L  AL DMYA CG +  A  +F N+  NKD
Sbjct: 206 LAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKD 265

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V++W+A+++G    G  +                               E + LF +M  
Sbjct: 266 VMAWSAMISGLAMHGLAE-------------------------------ECVGLFSKMIN 294

Query: 342 SNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
             +RP+  T +++  AC + G +  G ++++   +   +   I     ++D+Y + G ++
Sbjct: 295 QGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIK 354

Query: 401 KAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
           +A  V + M +  D   W A++ G  +  HGD
Sbjct: 355 EAWNVVKSMPMEPDVLVWGALLSGSRM--HGD 384



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 165/370 (44%), Gaps = 47/370 (12%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+    +   +H  + +H+Q ++ GL  +P VQ  L++   S  G++ +A +VF +IP+P
Sbjct: 70  LLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMY-SSCGNLGFARQVFDEIPQP 128

Query: 79  SVCLWNT-------------------------------MIKGYSRIDSHKNGVLIYLDML 107
            +  WN+                               MI GY R   +K  + ++ +M 
Sbjct: 129 DLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQ 188

Query: 108 K---SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCG 164
               +DVRP+ +T   +L    R  A+E GK  H ++ K G    V +  ALI  Y  CG
Sbjct: 189 MLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCG 248

Query: 165 EVDMARGIF-DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
            V+ A  +F ++    DV+ W+AM SG       +E   LF +M  +GV P +VT + V 
Sbjct: 249 SVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVF 308

Query: 224 SACAKLKDLDVGK-RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKD 281
            AC     +  GK    R  ++  I+P +     + D+Y   G +  A  +  ++    D
Sbjct: 309 CACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPD 368

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTAMIDGYLRVNRFREALTL 335
           V+ W A+++G    G ++       ++ E +      YVL   + + Y +  R+ +   +
Sbjct: 369 VLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVL---LSNVYAKRGRWEDVRHV 425

Query: 336 FREMQTSNIR 345
              M+T  I+
Sbjct: 426 RDLMETMGIK 435



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 113/266 (42%), Gaps = 42/266 (15%)

Query: 309 PERDYVLWTAMIDGYLRV-----NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           P  +  LW  +I  +++            +++F  M+   ++PD  T   +L + A+   
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE--------------- 408
           L LG  V   I +  +  D FV  +LI MY  CG++  A++VF E               
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINA 139

Query: 409 ----------------MLRKDKFTWTAMIVGLAINGHGDKSLDMFS--QMLRAS-IIPDE 449
                           M  ++  +W+ MI G    G   ++L +F   QML  + + P+E
Sbjct: 140 NFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNE 199

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-CMVDLLGRAGHLNEALEVI 508
            T  GVL+AC   G ++ G+  +A   I     P +   G  ++D+  + G + +A  V 
Sbjct: 200 FTMSGVLAACGRLGALEHGK--WAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVF 257

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAE 534
            N+    + + W A++    +H  AE
Sbjct: 258 SNLGPNKDVMAWSAMISGLAMHGLAE 283


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 274/772 (35%), Positives = 425/772 (55%), Gaps = 71/772 (9%)

Query: 19   LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            +++   T +++   K IHS   + G  ++  + N L++   +  GD+  A ++F  +P+ 
Sbjct: 336  ILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMY-ARCGDLPKARELFYTMPKR 394

Query: 79   SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
             +  WN +I GY+R +     + +Y  M    V+P   TF  LL       A   GK +H
Sbjct: 395  DLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIH 454

Query: 139  CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
              +L+ G  S+  + NAL++ Y  CG +  A+ +F+ +   DV++WN+M +G+ +   ++
Sbjct: 455  EDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYE 514

Query: 199  ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
               KLF EM+ + + P ++T   VLS C   + L++GK+ H  + E  +  ++ L NAL 
Sbjct: 515  TAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALI 574

Query: 259  DMYAAC-------------------------------GEMGFALEIFGNIKN-------- 279
            +MY  C                               GE   A+E+F  ++N        
Sbjct: 575  NMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKS 634

Query: 280  ------------------KDVISW-------------TAIVTGYINRGQVDMARQYFDQM 308
                              K VI++              A+++ Y   G +  AR+ FD+M
Sbjct: 635  TFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKM 694

Query: 309  PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
            P RD V W  +I GY +    + A+    +MQ  ++ P++F+ VS+L AC++  ALE G+
Sbjct: 695  PSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGK 754

Query: 369  WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
             V   I K K++ D+ VG ALI MY KCG   +AQ VF  ++ K+  TW AMI   A +G
Sbjct: 755  RVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHG 814

Query: 429  HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
               K+L  F+ M +  I PD  T+  +LSAC H G+V EG + F+ M  ++G+ P   HY
Sbjct: 815  LASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHY 874

Query: 489  GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
            GC+V LLGRA    EA  +I  MP  P++ VW  LLGACR+H +  +AE AA   L+L+ 
Sbjct: 875  GCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNA 934

Query: 549  DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
             N AVY+LL N+YAA  RWD+  ++R+++  RGI+K PG S IE++ ++HEF+A D+SHP
Sbjct: 935  RNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHP 994

Query: 609  QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPG 668
            +T EIY +L  ++ +++  GY PD   V  D+G+  +E ++  HSE+LA+A+GLI + PG
Sbjct: 995  ETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPG 1054

Query: 669  VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              IRI KNLR+C DCH  +K +S +  RE+I RD  RFH FK+G CSC+DYW
Sbjct: 1055 TPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 169/595 (28%), Positives = 283/595 (47%), Gaps = 39/595 (6%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
            S+  ISP         L+    T   + + K+IH  T++ GL ++  V   LVT C   
Sbjct: 220 MSSEGISPDKVTY--INLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCV-R 276

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
            GD+  A + F+      V ++N +I   ++   +      Y  M    V  +  T+  +
Sbjct: 277 CGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSI 336

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L   +   A+E GK +H H+ + G  S V + NALIS Y  CG++  AR +F    K D+
Sbjct: 337 LNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDL 396

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           ++WNA+ +GY R +   E  +L+ +M+ +GV P  VT + +LSACA       GK  H  
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           +    I  N  L NAL +MY  CG +  A  +F   + +DVISW +++ G+   G     
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGS---- 512

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                      +  A  LF+EMQ   + PD  T  S+L+ C N 
Sbjct: 513 ---------------------------YETAYKLFQEMQNEELEPDNITFASVLSGCKNP 545

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            ALELG+ +   I ++ ++ D+ +GNALI+MY +CG ++ A+ VF  +  +D  +WTAMI
Sbjct: 546 EALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMI 605

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G A  G   K++++F QM      P + T+  +L  CT +  +DEG++  A   +  G 
Sbjct: 606 GGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIA-YILNSGY 664

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           E +      ++    ++G + +A EV   MP + + + W  ++     +   + A   A 
Sbjct: 665 ELDTGVGNALISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAGYAQNGLGQTAVEFAY 723

Query: 542 QILELD-PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK--TPGCSMIEM 593
           Q+ E D   N+  +V L N  ++ +  +  + +   I+ R ++     G ++I M
Sbjct: 724 QMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISM 778



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 143/548 (26%), Positives = 264/548 (48%), Gaps = 41/548 (7%)

Query: 9   PPSTLTQETPLISPIETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM 65
           P  T T+    ++ ++ C     + + K+IH+Q ++  +  +  + N L+      +  +
Sbjct: 20  PRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVL 79

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             A +VF+++PR  V  WN++I  Y++    K    ++ +M  +   P+  T+  +L   
Sbjct: 80  D-AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTAC 138

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
                +E GK++H  ++K G+     VQN+L+S Y  CG++  AR +F      DVV++N
Sbjct: 139 YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYN 198

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
            M   Y +     E   LFG+M  +G+ P  VT + +L A      LD GKR H+   E 
Sbjct: 199 TMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE 258

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ-VDMARQY 304
            +  ++ +  AL  M   CG++  A + F    ++DV+ + A++      G  V+   QY
Sbjct: 259 GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQY 318

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           +                                 M++  +  +  T +SIL AC+   AL
Sbjct: 319 Y--------------------------------RMRSDGVALNRTTYLSILNACSTSKAL 346

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           E G+ + ++I ++   +D+ +GNALI MY +CGD+ KA+ +F  M ++D  +W A+I G 
Sbjct: 347 EAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGY 406

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A      +++ ++ QM    + P  VT++ +LSAC ++    +G+    D+ ++ GI+ N
Sbjct: 407 ARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDI-LRSGIKSN 465

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
                 ++++  R G L EA  V +    + + I W +++     H   E A    +++ 
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQ 524

Query: 545 --ELDPDN 550
             EL+PDN
Sbjct: 525 NEELEPDN 532



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 222/479 (46%), Gaps = 34/479 (7%)

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           T+  LL+  TR   +   K +H  +++      +F+ N LI+ Y  C  V  A  +F   
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
            + DV++WN++ S Y +     +  +LF EM+  G +P  +T + +L+AC    +L+ GK
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
           + H  + +     +  ++N+L  MY  CG++  A ++F  I  +DV+S+  ++  Y  + 
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
            V                               +E L LF +M +  I PD+ T +++L 
Sbjct: 209 YV-------------------------------KECLGLFGQMSSEGISPDKVTYINLLD 237

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           A      L+ G+ +     +  + +DI VG AL+ M  +CGDV+ A++ F+    +D   
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVV 297

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           + A+I  LA +GH  ++ + + +M    +  +  TY+ +L+AC+ +  ++ G+   + ++
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEM 535
            + G   +      ++ +  R G L +A E+   MP K + I W A++ G  R     E 
Sbjct: 358 -EDGHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEA 415

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
             +  +   E        ++ L +  A  + + + + + + IL  GIK     +   MN
Sbjct: 416 MRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMN 474


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/610 (40%), Positives = 395/610 (64%), Gaps = 4/610 (0%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACK 70
           +     PL+S +E C+ +  LKQI +Q I  GL+ +P   ++L+ FC  SE   + Y+ K
Sbjct: 49  SFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVK 108

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS---DVRPDNYTFPFLLKGFTR 127
           + + I  P++  WN  I+G+S  ++ K   L+Y  ML+    + RPD++T+P L K    
Sbjct: 109 ILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCAD 168

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
                 G  +  HVLK   +    V NA I  +  CG+++ AR +FD S   D+V+WN +
Sbjct: 169 LRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCL 228

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            +GYK++ + ++   ++  ME +GV P  VT++ ++S+C+ L DL+ GK  + YVKE  +
Sbjct: 229 INGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGL 288

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
              + L NAL DM++ CG++  A  IF N++ + ++SWT +++GY   G +D++R+ FD 
Sbjct: 289 RMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDD 348

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           M E+D VLW AMI G ++  R ++AL LF+EMQTSN +PDE T++  L+AC+ LGAL++G
Sbjct: 349 MEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVG 408

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
            W+  YI+K  +  ++ +G +L+DMY KCG++ +A  VF  +  ++  T+TA+I GLA++
Sbjct: 409 IWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALH 468

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G    ++  F++M+ A I PDE+T++G+LSAC H GM+  GR+YF+ M  +  + P   H
Sbjct: 469 GDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKH 528

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y  MVDLLGRAG L EA  ++++MPM+ ++ VWGALL  CR+H + E+ E AAK++LELD
Sbjct: 529 YSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELD 588

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P +  +YVLL  +Y   N W++ +  R+M+ +RG++K PGCS IE+NG+V EF+  DKS 
Sbjct: 589 PSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSR 648

Query: 608 PQTKEIYLKL 617
           P++++IY +L
Sbjct: 649 PESEKIYDRL 658


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/693 (38%), Positives = 395/693 (56%), Gaps = 32/693 (4%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S+ Q +++H+  +K G+  N  ++N L++   ++ G +  A +VF  I   ++  W  MI
Sbjct: 111 SLEQGREVHAAILKSGIQPNRYLENTLLSMY-AKCGSLTDARRVFDGIRDRNIVSWTAMI 169

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           + +   + +      Y  M  +  +PD  TF  LL  FT    ++ G+++H  + K G +
Sbjct: 170 EAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLE 229

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
               V  +L+  Y  CG++  A+ IFD   + +VVTW  + +GY +  Q D   +L  +M
Sbjct: 230 LEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKM 289

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           ++  V P  +T   +L  C     L+ GK+ HRY+ +      + + NAL  MY  CG +
Sbjct: 290 QQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGL 349

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
                                            AR+ F  +P RD V WTAM+ GY ++ 
Sbjct: 350 -------------------------------KEARKLFGDLPHRDVVTWTAMVTGYAQLG 378

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
              EA+ LFR MQ   I+PD+ T  S LT+C++   L+ G+ +   +       D+++ +
Sbjct: 379 FHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQS 438

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           AL+ MY KCG ++ A+ VF +M  ++   WTAMI G A +G   ++L+ F QM +  I P
Sbjct: 439 ALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKP 498

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D+VT+  VLSACTH G+V+EGR++F  M + +GI+P   HY C VDLLGRAGHL EA  V
Sbjct: 499 DKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENV 558

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           I  MP +P   VWGALL ACR+H D E  E AA+ +L+LDPD++  YV L NIYAA  R+
Sbjct: 559 ILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRY 618

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           ++  ++RQ++  R + K PG S IE++G VH F   DKSHP+ KEIY +L ++T  +K  
Sbjct: 619 EDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQ 678

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           GY+PD   V  DV EE K + +  HSE+LA+ +GL+ + PG  IRIVKNLR+C DCH  +
Sbjct: 679 GYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTAS 738

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           K +S V  RE+I RD  RFHHF  G CSC D+W
Sbjct: 739 KFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/708 (37%), Positives = 417/708 (58%), Gaps = 36/708 (5%)

Query: 16  ETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           +   +S +  C   E++ Q K++H++  ++G  T   V   +++   ++ G M+ A +VF
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMY-TKCGSMEDALEVF 370

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             +   +V  W  MI G+++        L +  M++S + P+  TF  +L   +   A++
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G+++  H+++ G+ S   V+ AL+S Y  CG +  A  +F+   K +VV WNAM + Y 
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           + +Q+D     F  + ++G+ P S T   +L+ C     L++GK  H  + +  +  +L 
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLH 550

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + NAL  M+  CG               D++S                A+  F+ MP+RD
Sbjct: 551 VSNALVSMFVNCG---------------DLMS----------------AKNLFNDMPKRD 579

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W  +I G+++  + + A   F+ MQ S I+PD+ T   +L ACA+  AL  G  +  
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            I +     D+ VG  LI MY KCG +E A +VF ++ +K+ ++WT+MI G A +G G +
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKE 699

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L++F QM +  + PD +T+VG LSAC H G+++EG  +F  M  +  IEP   HYGCMV
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMV 758

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRAG LNEA+E I  M ++P+S VWGALLGAC+VH + E+AE AA++ LELDP++  
Sbjct: 759 DLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNG 818

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
           V+V+L NIYAA   W    ++R+++LDRG+ K PG S IE++G VH F + DK+HPQT+E
Sbjct: 819 VFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEE 878

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I+ +L+ +  +++ +GY+PD   V  DV + +KE+A++ HSE+LA+ +GL+ + P   I 
Sbjct: 879 IHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIV 938

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I KNLR+C DCH   K +S +  R++I RD  RFHHFK G CSC D+W
Sbjct: 939 ISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 161/611 (26%), Positives = 285/611 (46%), Gaps = 93/611 (15%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           ++I++   K G+  +  ++N L+    ++ G+   A ++F  +    V  WN ++ GY +
Sbjct: 130 ERIYNHIKKSGVQPDIFMRNTLINMY-AKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              ++    ++  M++  V+PD  TF  +L        V+ G+EL+  +LK G+D+ +FV
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             ALI+ +  CG++  A  +FD     D+VTW +M +G  R  +F +   LF  ME +GV
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV 308

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P  V  V +L AC   + L+ GK+ H  +KE      + +  A+  MY  CG M  ALE
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE---------------------- 310
           +F  +K ++V+SWTA++ G+   G++D A  +F++M E                      
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428

Query: 311 -------RDYVL----------WTAMIDGYLRVNRFREALTLFREMQTSN---------- 343
                  +D+++           TA++  Y +    ++A  +F ++   N          
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITA 488

Query: 344 ---------------------IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
                                I+P+  T  SIL  C +  +LELG+WV   I K  +++D
Sbjct: 489 YVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESD 548

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           + V NAL+ M+  CGD+  A+ +F +M ++D  +W  +I G   +G    + D F  M  
Sbjct: 549 LHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE 608

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-------MVDLL 495
           + I PD++T+ G+L+AC     + EGR   A +T        EA + C       ++ + 
Sbjct: 609 SGIKPDKITFTGLLNACASPEALTEGRRLHALIT--------EAAFDCDVLVGTGLISMY 660

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH-RDAEMAEMAAKQILE-LDPDNEAV 553
            + G + +A +V   +P K N   W +++     H R  E  E+  +   E + PD    
Sbjct: 661 TKCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPD---- 715

Query: 554 YVLLCNIYAAC 564
           ++      +AC
Sbjct: 716 WITFVGALSAC 726



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 236/470 (50%), Gaps = 40/470 (8%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+ ++ H+ K G    +F++N LI+ Y  CG    A+ IFD   + DV +WN +  GY +
Sbjct: 129 GERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
              ++E  KL  +M +  V P   T V +L+ACA  +++D G+  +  + +     +L +
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             AL +M+  CG++G A ++F N+  +D+++WT+++TG    G                 
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHG----------------- 291

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
                         RF++A  LF+ M+   ++PD+   VS+L AC +  ALE G+ V   
Sbjct: 292 --------------RFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHAR 337

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           + +     +I+VG A++ MY KCG +E A  VF  +  ++  +WTAMI G A +G  D++
Sbjct: 338 MKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEA 397

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
              F++M+ + I P+ VT++ +L AC+    +  G++   D  I+ G   ++     ++ 
Sbjct: 398 FLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ-IQDHIIEAGYGSDDRVRTALLS 456

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNE 551
           +  + G L +A  V + +  K N + W A++ A   H   + A    + +L+  + P N 
Sbjct: 457 MYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NS 514

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           + +  + N+  + +  +  + +  +I+  G++     S    N +V  FV
Sbjct: 515 STFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVS----NALVSMFV 560



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 197/400 (49%), Gaps = 41/400 (10%)

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           D    NA+ +   +  QF+E  ++   ++   +     T   +L  C K K+L  G+R +
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
            ++K+  + P++ + N L +MYA CG    A +IF +++ KDV SW  ++ GY+  G   
Sbjct: 134 NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHG--- 190

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
                                        + EA  L  +M   +++PD+ T VS+L ACA
Sbjct: 191 ----------------------------LYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
           +   ++ G  +   I K     D+FVG ALI+M+ KCGD+  A +VF  +  +D  TWT+
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTS 282

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           MI GLA +G   ++ ++F +M    + PD+V +V +L AC H   +++G++  A M  + 
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK-EV 341

Query: 480 GIEPNEAHYG-CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           G +  E + G  ++ +  + G + +ALEV  ++    N + W A++     H   + A +
Sbjct: 342 GWD-TEIYVGTAILSMYTKCGSMEDALEVF-DLVKGRNVVSWTAMIAGFAQHGRIDEAFL 399

Query: 539 AAKQILE--LDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
              +++E  ++P+     V   +I  AC+     +  +Q+
Sbjct: 400 FFNKMIESGIEPNR----VTFMSILGACSSPSALKRGQQI 435


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/708 (37%), Positives = 417/708 (58%), Gaps = 36/708 (5%)

Query: 16  ETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           +   +S +  C   E++ Q K++H++  ++G  T   V   +++   ++ G M+ A +VF
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMY-TKCGSMEDALEVF 370

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             +   +V  W  MI G+++        L +  M++S + P+  TF  +L   +   A++
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G+++  H+++ G+ S   V+ AL+S Y  CG +  A  +F+   K +VV WNAM + Y 
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           + +Q+D     F  + ++G+ P S T   +L+ C     L++GK  H  + +  +  +L 
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLH 550

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + NAL  M+  CG               D++S                A+  F+ MP+RD
Sbjct: 551 VSNALVSMFVNCG---------------DLMS----------------AKNLFNDMPKRD 579

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W  +I G+++  + + A   F+ MQ S I+PD+ T   +L ACA+  AL  G  +  
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            I +     D+ VG  LI MY KCG +E A +VF ++ +K+ ++WT+MI G A +G G +
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKE 699

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L++F QM +  + PD +T+VG LSAC H G+++EG  +F  M  +  IEP   HYGCMV
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMV 758

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRAG LNEA+E I  M ++P+S VWGALLGAC+VH + E+AE AA++ LELDP++  
Sbjct: 759 DLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNG 818

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
           V+V+L NIYAA   W    ++R+++LDRG+ K PG S IE++G VH F + DK+HPQT+E
Sbjct: 819 VFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEE 878

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I+ +L+ +  +++ +GY+PD   V  DV + +KE+A++ HSE+LA+ +GL+ + P   I 
Sbjct: 879 IHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIV 938

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I KNLR+C DCH   K +S +  R++I RD  RFHHFK G CSC D+W
Sbjct: 939 ISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 161/611 (26%), Positives = 284/611 (46%), Gaps = 93/611 (15%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           ++I++   K G+  +  + N L+    ++ G+   A ++F  +    V  WN ++ GY +
Sbjct: 130 ERIYNHIKKSGVQPDIFMWNTLINMY-AKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              ++    ++  M++  V+PD  TF  +L        V+ G+EL+  +LK G+D+ +FV
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             ALI+ +  CG++  A  +FD     D+VTW +M +G  R  +F +   LF  ME +GV
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV 308

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P  V  V +L AC   + L+ GK+ H  +KE      + +  A+  MY  CG M  ALE
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE---------------------- 310
           +F  +K ++V+SWTA++ G+   G++D A  +F++M E                      
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428

Query: 311 -------RDYVL----------WTAMIDGYLRVNRFREALTLFREMQTSN---------- 343
                  +D+++           TA++  Y +    ++A  +F ++   N          
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITA 488

Query: 344 ---------------------IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
                                I+P+  T  SIL  C +  +LELG+WV   I K  +++D
Sbjct: 489 YVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESD 548

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           + V NAL+ M+  CGD+  A+ +F +M ++D  +W  +I G   +G    + D F  M  
Sbjct: 549 LHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE 608

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-------MVDLL 495
           + I PD++T+ G+L+AC     + EGR   A +T        EA + C       ++ + 
Sbjct: 609 SGIKPDKITFTGLLNACASPEALTEGRRLHALIT--------EAAFDCDVLVGTGLISMY 660

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH-RDAEMAEMAAKQILE-LDPDNEAV 553
            + G + +A +V   +P K N   W +++     H R  E  E+  +   E + PD    
Sbjct: 661 TKCGSIEDAHQVFHKLP-KKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPD---- 715

Query: 554 YVLLCNIYAAC 564
           ++      +AC
Sbjct: 716 WITFVGALSAC 726



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 235/470 (50%), Gaps = 40/470 (8%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+ ++ H+ K G    +F+ N LI+ Y  CG    A+ IFD   + DV +WN +  GY +
Sbjct: 129 GERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
              ++E  KL  +M +  V P   T V +L+ACA  +++D G+  +  + +     +L +
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             AL +M+  CG++G A ++F N+  +D+++WT+++TG    G                 
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHG----------------- 291

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
                         RF++A  LF+ M+   ++PD+   VS+L AC +  ALE G+ V   
Sbjct: 292 --------------RFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHAR 337

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           + +     +I+VG A++ MY KCG +E A  VF  +  ++  +WTAMI G A +G  D++
Sbjct: 338 MKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEA 397

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
              F++M+ + I P+ VT++ +L AC+    +  G++   D  I+ G   ++     ++ 
Sbjct: 398 FLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ-IQDHIIEAGYGSDDRVRTALLS 456

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNE 551
           +  + G L +A  V + +  K N + W A++ A   H   + A    + +L+  + P N 
Sbjct: 457 MYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NS 514

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           + +  + N+  + +  +  + +  +I+  G++     S    N +V  FV
Sbjct: 515 STFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVS----NALVSMFV 560



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 197/400 (49%), Gaps = 41/400 (10%)

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           D    NA+ +   +  QF+E  ++   ++   +     T   +L  C K K+L  G+R +
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
            ++K+  + P++ + N L +MYA CG    A +IF +++ KDV SW  ++ GY+  G   
Sbjct: 134 NHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHG--- 190

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
                                        + EA  L  +M   +++PD+ T VS+L ACA
Sbjct: 191 ----------------------------LYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
           +   ++ G  +   I K     D+FVG ALI+M+ KCGD+  A +VF  +  +D  TWT+
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTS 282

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           MI GLA +G   ++ ++F +M    + PD+V +V +L AC H   +++G++  A M  + 
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK-EV 341

Query: 480 GIEPNEAHYG-CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           G +  E + G  ++ +  + G + +ALEV  ++    N + W A++     H   + A +
Sbjct: 342 GWD-TEIYVGTAILSMYTKCGSMEDALEVF-DLVKGRNVVSWTAMIAGFAQHGRIDEAFL 399

Query: 539 AAKQILE--LDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
              +++E  ++P+     V   +I  AC+     +  +Q+
Sbjct: 400 FFNKMIESGIEPNR----VTFMSILGACSSPSALKRGQQI 435


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/759 (36%), Positives = 415/759 (54%), Gaps = 71/759 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTF---------CCSEK----GDMKYACK--------- 70
           + IH+  +K GLL +  + N L+++         C  E      D+ YA +         
Sbjct: 45  RAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLL 104

Query: 71  --------------VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
                         VF ++P      W  M+ G +R     + V  +LDM+   + P  +
Sbjct: 105 SMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQF 164

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
               +L       A   G+++H  V+K G  S V V N+++  Y  CG+ + AR +F+  
Sbjct: 165 MLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERM 224

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL----------------------- 213
                 +WNAM S Y    + D    +F  ME + ++                       
Sbjct: 225 KVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFS 284

Query: 214 ---------PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
                    P   T+  VLSACA L+ L +GK+ H Y+    +  +  + NAL   YA  
Sbjct: 285 RMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKS 344

Query: 265 GEMGFALEIFGN--IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
           G +  A  I     + + +VIS+TA++ GY+  G    AR+ FD M  RD + WTAMI G
Sbjct: 345 GSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVG 404

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           Y +  +  EA+ LFR M  S   P+  T+ ++L+ACA+L  L  G+ +     ++  +  
Sbjct: 405 YEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQS 464

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
           + V NA+I +Y + G V  A+RVF ++  RK+  TWT+MIV LA +G G++++ +F +ML
Sbjct: 465 VSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEML 524

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
           R  + PD VTY+GV SACTH G +D+G+ Y+  M  +HGI P  +HY CMVDLL RAG L
Sbjct: 525 RVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLL 584

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
            EA E I+ MP+ P+++VWG+LL ACRV ++A++AE+AA+++L +DPDN   Y  L N+Y
Sbjct: 585 TEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVY 644

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMT 621
           +AC RW++   + ++  D+ +KK  G S   +   VH F A D  HPQ   I  K  EM 
Sbjct: 645 SACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMW 704

Query: 622 SDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCV 681
            ++K  G++PD++ V  DV +E KE  + +HSEKLA+AFGLIS+    T+RI+KNLR+C 
Sbjct: 705 EEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCN 764

Query: 682 DCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           DCH   K +S V DRE+IVRD TRFHHF+ G CSCKDYW
Sbjct: 765 DCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 143/563 (25%), Positives = 225/563 (39%), Gaps = 145/563 (25%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           T ++S     E+    +++HS  IKLGL +   V N  V +   + GD + A  VF ++ 
Sbjct: 167 TNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANS-VLYMYGKCGDAETARAVFERMK 225

Query: 77  RPSVCLWNTMIKGYS---RID-----------------------SHKNG-----VLIYLD 105
             S   WN M+  Y+   R+D                        ++NG     +  +  
Sbjct: 226 VRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSR 285

Query: 106 ML-KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCG 164
           ML  S + PD +T   +L        ++ GK++H ++L+ G   S  + NALISTY   G
Sbjct: 286 MLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSG 345

Query: 165 EVDMARGI---------------------------------FDVSYKDDVVTWNAMFSGY 191
            V+ AR I                                 FDV    DV+ W AM  GY
Sbjct: 346 SVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGY 405

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
           ++  Q DE  +LF  M R G  P S T+  VLSACA L  L  GK+ H     C+ + +L
Sbjct: 406 EQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIH-----CRAIRSL 460

Query: 252 -----ILENALTDMYAACGEMGFALEIFGNI-KNKDVISWTAIVTG-------------- 291
                 + NA+  +YA  G +  A  +F  I   K+ ++WT+++                
Sbjct: 461 QEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLF 520

Query: 292 --------------YI-------NRGQVDMARQYFDQM-------PERDYVLWTAMIDGY 323
                         YI       + G +D  ++Y++QM       PE  +  +  M+D  
Sbjct: 521 EEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSH--YACMVDLL 578

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
            R     EA    + M    + PD     S+L AC      +L E     +      N  
Sbjct: 579 ARAGLLTEAHEFIQRMP---VAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNS- 634

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDK-------FTWTAMIVGLAINGHGD----- 431
              +AL ++Y  CG    A R+++  LRKDK       F+WT +   + + G  D     
Sbjct: 635 GAYSALANVYSACGRWNDAARIWK--LRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQ 692

Query: 432 ------KSLDMFSQMLRASIIPD 448
                 K+ +M+ ++ +A  +PD
Sbjct: 693 RDAICKKAAEMWEEIKKAGFVPD 715



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 130/259 (50%), Gaps = 10/259 (3%)

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGE----MGFALEIFGNI--KNKDVISWT 286
             G+  H +  +  ++ +  L N L   YA  G        A  +F +I    ++  +W 
Sbjct: 42  SAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWN 101

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
           ++++ Y   G++  AR  F QMPERD V WT M+ G  R  RF +A+  F +M    + P
Sbjct: 102 SLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAP 161

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
            +F + ++L++CA   A  +G  V +++ K  + + + V N+++ MY KCGD E A+ VF
Sbjct: 162 SQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVF 221

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
             M  + + +W AM+      G  D +L MF  M   SI    V++  +++     G+ D
Sbjct: 222 ERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSWNAIIAGYNQNGLDD 277

Query: 467 EGREYFADMTIQHGIEPNE 485
              ++F+ M     +EP+E
Sbjct: 278 MALKFFSRMLTASSMEPDE 296


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/585 (42%), Positives = 362/585 (61%), Gaps = 4/585 (0%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  + + G D    +   L  +Y   G +D +  +F  +    V  W A+  G+    
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
             ++    + +M  +GV P + T   +L  C     ++ GK  H    +     +L +  
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRT 163

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
            L D+YA  G++  A ++F  +  K ++S TA++T Y   G++D AR  FD M ERD V 
Sbjct: 164 GLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 223

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           W  MIDGY +     EAL LFR M  +  +P+E T++S+L+AC  LGALE G WV +YI+
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 283

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
            N ++ ++ VG AL+DMY KCG +E A+ VF ++  KD   W +MIVG A++G   ++L 
Sbjct: 284 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQ 343

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +F  M R  + P  +T++G+LSAC H+G V EG + F  M  ++GIEP   HYGCMV+LL
Sbjct: 344 LFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLL 403

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
           GRAGH+ +A E++KNM ++P+ ++WG LLGACR+H    + E   + +++ +  N   Y+
Sbjct: 404 GRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYI 463

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
           LL NIYAA   WD    LR M+ D G+KK PGCS IE+N  VHEF+AG  +HP+ KEIY+
Sbjct: 464 LLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYM 523

Query: 616 KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
            L+E+   LK  GY P    V  D+GE +KER++  HSEKLA+AFGLI++ PG TI+IVK
Sbjct: 524 MLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVK 583

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH + KL+S +  R+++VRD+ RFHHF +GSCSC DYW
Sbjct: 584 NLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 195/445 (43%), Gaps = 81/445 (18%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           I+  +++  L QIH+   + GL  +P +  KL     S  G + Y+  +F +   PSV  
Sbjct: 37  IDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYAS-LGRLDYSVALFGRTQNPSVFF 95

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           W  +I G++    H+  +  Y  ML   V P+ +TF  +LK       +E GK LH   +
Sbjct: 96  WTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILK----LCPIEPGKALHSQAV 151

Query: 143 KFGFDSSVFVQNALISTY-----------------------------CLC--GEVDMARG 171
           K GFDS ++V+  L+  Y                             C    GE+D AR 
Sbjct: 152 KLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARV 211

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +FD   + D V WN M  GY +    +E   LF  M +    P  VT++ VLSAC +L  
Sbjct: 212 LFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGA 271

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           L+ G+  H Y++   I  N+ +  AL DMY+ CG +  A  +F  I +KDV++W +++ G
Sbjct: 272 LESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVG 331

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           Y   G        F Q                       EAL LF+ M    + P   T 
Sbjct: 332 YAMHG--------FSQ-----------------------EALQLFKSMCRMGLHPTNITF 360

Query: 352 VSILTACANLGALELGEWVKTYIDK-NKVKNDIFVG------NALIDMYCKCGDVEKAQR 404
           + IL+AC + G      WV    D  NK+K++  +         ++++  + G VE+A  
Sbjct: 361 IGILSACGHSG------WVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYE 414

Query: 405 VFREM-LRKDKFTWTAMIVGLAING 428
           + + M +  D   W  ++    ++G
Sbjct: 415 LVKNMNIEPDPVLWGTLLGACRLHG 439



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 147/338 (43%), Gaps = 43/338 (12%)

Query: 10  PSTLTQETPL-ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           P+  T  + L + PIE        K +HSQ +KLG  ++  V+  L+    +  GD+  A
Sbjct: 126 PNAFTFSSILKLCPIEPG------KALHSQAVKLGFDSDLYVRTGLLD-VYARGGDVVSA 178

Query: 69  CKVFRKIP--------------------------------RPSVCLWNTMIKGYSRIDSH 96
            ++F  +P                                R  VC WN MI GY++    
Sbjct: 179 QQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC-WNVMIDGYTQNGMP 237

Query: 97  KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
              ++++  MLK+  +P+  T   +L    +  A+E G+ +H ++   G   +V V  AL
Sbjct: 238 NEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTAL 297

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           +  Y  CG ++ AR +FD     DVV WN+M  GY       E  +LF  M R G+ PT+
Sbjct: 298 VDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTN 357

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           +T + +LSAC     +  G      +K E  I P +     + ++    G +  A E+  
Sbjct: 358 ITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVK 417

Query: 276 NIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           N+    D + W  ++      G++ +  +  + + +++
Sbjct: 418 NMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 455


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/754 (35%), Positives = 431/754 (57%), Gaps = 67/754 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           + +H Q IK GL     + N L+TF  ++ G +++A  VF ++P  S   WNT+I GY++
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFY-AKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 93  IDSHK-------------------------------NGVLIYLDMLKSDVRPDNYTFPFL 121
             + +                               N + ++  M+   V P  +T   +
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L     +  ++ G+++H  V+K G  S V V  +L++ Y  CG+  +A+ +FD     ++
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVL---------------------------- 213
            TWNA+ S Y +  QF+     F +M  + ++                            
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNE 268

Query: 214 ----PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
               P + T+  +LSACA L+ L++GK+ H Y+   +   +  + NAL  MYA  G +  
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 270 ALEIF--GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
           A  I       N ++I++T+++ GY   G V  AR+ F+++ +RD V WTAMI GY++  
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
            + +AL LFR M      P+ +T+ ++L+  ++L  LE G+ +     K    +   V N
Sbjct: 389 LWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN 448

Query: 388 ALIDMYCKCGDVEKAQRVFR-EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           ALI MY K G++  A+RVF     +K+  +WT+MI+ LA +G G +++++F +ML   + 
Sbjct: 449 ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMK 508

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD +TYVGVLSACTH G+V++GR+Y+  MT  H IEP  +HY CM+DL GRAG L EA  
Sbjct: 509 PDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYL 568

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
            I++MP++P++I WG+LL +C++H++A++A++AA+++L +DP N   Y+ L N+Y+AC +
Sbjct: 569 FIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGK 628

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           W+N  + R+++ DRG++K  G S I +   VH F   D  HPQ  EIY  + E+  ++K 
Sbjct: 629 WENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKK 688

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
           +G++PD   V  D+ EE KE+ +  HSEKLA+AFGL+++     +RI+KNLR+C DCH  
Sbjct: 689 MGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSA 748

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            K +S +  RE+IVRD TRFHHFK GSCSC+DYW
Sbjct: 749 IKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 221/463 (47%), Gaps = 68/463 (14%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+ +HC ++K G    V++ N L++ Y   G +  A  +FD        +WN + SGY +
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 194 VKQFDETRKL-------------------------------FGEMERKGVLPTSVTIVLV 222
              F+ +R+L                               F +M  + V P+  T+  V
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           LS+CA  + LD+G++ H +V +  +   + +  +L +MYA CG+   A  +F  +  K++
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QT 341
            +W A+++ Y+  GQ ++A   F++MP+RD V W +MI GY +     EAL +F +M   
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNE 268

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE- 400
            +++PD FT+ SIL+ACANL  L +G+ +  YI + + +    VGNALI MY K G VE 
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 401 --------------------------------KAQRVFREMLRKDKFTWTAMIVGLAING 428
                                            A+ +F ++  +D   WTAMIVG   NG
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
             + +L++F  M+     P+  T   +LS  +   +++ G++  A   I+ G     +  
Sbjct: 389 LWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHAS-AIKAGESSTPSVT 447

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIV-WGALLGACRVH 530
             ++ +  + G++N A  V  ++P     IV W +++ A   H
Sbjct: 448 NALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQH 489



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 212/471 (45%), Gaps = 53/471 (11%)

Query: 211 GVLPTSVTIVL-VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
           G  PTS      +L    ++KD   G+  H  + +  +   + L N L   YA  G + F
Sbjct: 4   GNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRF 63

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           A  +F  +  K   SW  +++GY  +G  +++R+   +MP+ D V WTA+I GY +   F
Sbjct: 64  AHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLF 123

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
             A+ +F +M +  + P +FT+ ++L++CA    L++G  + +++ K  + + + V  +L
Sbjct: 124 DNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSL 183

Query: 390 IDMYCKCGD-------------------------------VEKAQRVFREMLRKDKFTWT 418
           ++MY KCGD                                E A   F +M  +D  +W 
Sbjct: 184 LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWN 243

Query: 419 AMIVGLAINGHGDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           +MI G +  G+  ++L +FS+ML   S+ PD  T   +LSAC +   ++ G++  A + +
Sbjct: 244 SMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYI-L 302

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK-NMPMKPNSIVWGALLGACRVHRDAEMA 536
           +   E + A    ++ +  ++G +  A  +++ N     N I + +LL       + +  
Sbjct: 303 RAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVK-- 360

Query: 537 EMAAKQILELDPDNEAV-YVLLCNIYAACNRWDNFRELRQMILDRG-----------IKK 584
              A++I     D + V +  +   Y     W++  EL +++++ G           +  
Sbjct: 361 --PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSV 418

Query: 585 TPGCSMIEMNGVVHEFV--AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           +   +++E    +H     AG+ S P      + +   T ++     + D+
Sbjct: 419 SSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDL 469


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/623 (40%), Positives = 376/623 (60%), Gaps = 33/623 (5%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYC--LCGEVDMARGIFDVSYKDDVVTWNAM 187
           ++++  +LH  VL+ G     +V  AL+  Y        D A  +F      +V  WN +
Sbjct: 45  SLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIV 104

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
             G     +  +    +G M      P   T   +  AC+  + +  G++ H +V +  I
Sbjct: 105 IKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGI 163

Query: 248 VPNLILENALTDMYAA------------------------------CGEMGFALEIFGNI 277
             ++ +++A   MYA+                              CG +  A  +F  +
Sbjct: 164 GSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQM 223

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
             K++ SW  ++ G    G +  AR+ FD+M ERD + W++M+DGY+   R++EAL +F+
Sbjct: 224 PVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQ 283

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
           +MQ    RP  F + S+L AC+N+GA++ G WV  Y+ +N +K D  +G AL+DMY KCG
Sbjct: 284 QMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCG 343

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            ++    VF EM  ++ FTW AMI GLAI+G  + +L++FS++    + P+ +T VGVL+
Sbjct: 344 RLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLT 403

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           AC H G VD+G   F  M   +G++P   HYGCMVDLLGR+G  +EA ++I +MPMKPN+
Sbjct: 404 ACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNA 463

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
            VWGALLGACR+H + ++AE   K +LEL+P N   YVLL NIYA   R+D+  ++R+++
Sbjct: 464 AVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLM 523

Query: 578 LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF 637
            +RGIK  PG S++++NG VHEF  GD SHPQ KEIY KL  +   L+  G+ PD S+V 
Sbjct: 524 KNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVL 583

Query: 638 LDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDRE 697
            D+ EE+KE AV  HSEKLA+AFGLI++ PG  I IVKNLR+C DCH   KL+S ++DRE
Sbjct: 584 FDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDRE 643

Query: 698 VIVRDKTRFHHFKHGSCSCKDYW 720
           +IVRD+ R+HHFK+G+CSCKD+W
Sbjct: 644 IIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 220/465 (47%), Gaps = 37/465 (7%)

Query: 2   FSNSSISPPSTLTQETPL-ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT-FCC 59
           FS     P S L Q+T L +   ++  S+  L Q+H+  ++ G   +  V   L+  +  
Sbjct: 18  FSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYAN 77

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
               +  +A KVF  IP P+V +WN +IKG    +     +  Y  M+  D RP+ +T+P
Sbjct: 78  PHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYP 136

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            L K  +   AV+ G+++H HV+K G  S V +++A I  Y   G ++ AR +F  S + 
Sbjct: 137 TLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMF-YSGES 195

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV-----LSACAKLKD--- 231
           DVV WN M  GY +    +  + LF +M  K +   +V I  +     L    KL D   
Sbjct: 196 DVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMS 255

Query: 232 ----------LDVGKRAHRYVKECKIVPNLILENA------LTDMYAACGEMGFALE--- 272
                     +D    A RY +  +I   +  E        L+ + AAC  +G   +   
Sbjct: 256 ERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRW 315

Query: 273 IFGNIKNK----DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
           +   +K      D +  TA++  Y   G++DM  + F++M ER+   W AMI G     R
Sbjct: 316 VHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGR 375

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGN 387
             +AL LF ++Q   ++P+  T+V +LTACA+ G ++ G  + +T  +   V  ++    
Sbjct: 376 AEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYG 435

Query: 388 ALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
            ++D+  + G   +A+ +   M ++ +   W A++    I+G+ D
Sbjct: 436 CMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFD 480



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 136/294 (46%), Gaps = 11/294 (3%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           ++ G++  A K+F ++       W++M+ GY     +K  + I+  M + + RP  +   
Sbjct: 239 AKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS 298

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L   +   A++ G+ +H ++ +        +  AL+  Y  CG +DM   +F+   + 
Sbjct: 299 SVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKER 358

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           ++ TWNAM  G     + ++  +LF +++   + P  +T+V VL+ACA    +D G R  
Sbjct: 359 EIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIF 418

Query: 240 RYVKECKIV-PNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQ 297
           + ++E   V P L     + D+    G    A ++  ++  K +   W A++      G 
Sbjct: 419 QTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGN 478

Query: 298 VDMARQYFDQMPERD------YVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            D+A +    + E +      YVL + +   Y +V RF +   + + M+   I+
Sbjct: 479 FDLAERVGKILLELEPQNSGRYVLLSNI---YAKVGRFDDVSKIRKLMKNRGIK 529


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/754 (35%), Positives = 431/754 (57%), Gaps = 67/754 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           + +H Q IK GL     + N L+TF  ++ G +++A  VF ++P  S   WNT+I GY++
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFY-AKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 93  IDSHK-------------------------------NGVLIYLDMLKSDVRPDNYTFPFL 121
             + +                               N + ++  M+   V P  +T   +
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L     +  ++ G+++H  V+K G  S V V  +L++ Y  CG+  +A+ +FD     ++
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVL---------------------------- 213
            TWNA+ S Y +  QF+     F +M  + ++                            
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNE 268

Query: 214 ----PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
               P + T+  +LSACA L+ L++GK+ H Y+   +   +  + NAL  MYA  G +  
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 270 ALEIF--GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
           A  I       N ++I++T+++ GY   G V  AR+ F+++ +RD V WTAMI GY++  
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
            + +AL LFR M      P+ +T+ ++L+  ++L  LE G+ +     K    +   V N
Sbjct: 389 LWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN 448

Query: 388 ALIDMYCKCGDVEKAQRVFR-EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           ALI MY K G++  A+RVF     +K+  +WT+MI+ LA +G G +++++F +ML   + 
Sbjct: 449 ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMK 508

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD +TYVGVLSACTH G+V++GR+Y+  MT  H IEP  +HY CM+DL GRAG L EA  
Sbjct: 509 PDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYL 568

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
            I++MP++P++I WG+LL +C++H++A++A++AA+++L +DP N   Y+ L N+Y+AC +
Sbjct: 569 FIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGK 628

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           W+N  + R+++ DRG++K  G S I +   VH F   D  HPQ  EIY  + E+  ++K 
Sbjct: 629 WENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKK 688

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
           +G++PD   V  D+ EE KE+ +  HSEKLA+AFGL+++     +RI+KNLR+C DCH  
Sbjct: 689 MGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSA 748

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            K +S +  RE+IVRD TRFHHFK GSCSC+DYW
Sbjct: 749 IKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 221/463 (47%), Gaps = 68/463 (14%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+ +HC ++K G    V++ N L++ Y   G +  A  +FD        +WN + SGY +
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 194 VKQFDETRKL-------------------------------FGEMERKGVLPTSVTIVLV 222
              F+ +R+L                               F +M  + V P+  T+  V
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           LS+CA  + LD+G++ H +V +  +   + +  +L +MYA CG+   A  +F  +  K++
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QT 341
            +W A+++ Y+  GQ ++A   F++MP+RD V W +MI GY +     EAL +F +M   
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNE 268

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE- 400
            +++PD FT+ SIL+ACANL  L +G+ +  YI + + +    VGNALI MY K G VE 
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 401 --------------------------------KAQRVFREMLRKDKFTWTAMIVGLAING 428
                                            A+ +F ++  +D   WTAMIVG   NG
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
             + +L++F  M+     P+  T   +LS  +   +++ G++  A   I+ G     +  
Sbjct: 389 LWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHAS-AIKAGESSTPSVT 447

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIV-WGALLGACRVH 530
             ++ +  + G++N A  V  ++P     IV W +++ A   H
Sbjct: 448 NALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQH 489



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 191/406 (47%), Gaps = 40/406 (9%)

Query: 211 GVLPTSVTIVL-VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
           G  PTS      +L    ++KD   G+  H  + +  +   + L N L   YA  G + F
Sbjct: 4   GNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRF 63

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           A  +F  +  K   SW  +++GY  +G  +++R+   +MP+ D V WTA+I GY +   F
Sbjct: 64  AHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLF 123

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
             A+ +F +M +  + P +FT+ ++L++CA    L++G  + +++ K  + + + V  +L
Sbjct: 124 DNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSL 183

Query: 390 IDMYCKCGD-------------------------------VEKAQRVFREMLRKDKFTWT 418
           ++MY KCGD                                E A   F +M  +D  +W 
Sbjct: 184 LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWN 243

Query: 419 AMIVGLAINGHGDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           +MI G +  G+  ++L +FS+ML   S+ PD  T   +LSAC +   ++ G++  A + +
Sbjct: 244 SMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYI-L 302

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK-NMPMKPNSIVWGALLGACRVHRDAEMA 536
           +   E + A    ++ +  ++G +  A  +++ N     N I + +LL       + +  
Sbjct: 303 RAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVK-- 360

Query: 537 EMAAKQILELDPDNEAV-YVLLCNIYAACNRWDNFRELRQMILDRG 581
              A++I     D + V +  +   Y     W++  EL +++++ G
Sbjct: 361 --PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEG 404


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/777 (35%), Positives = 424/777 (54%), Gaps = 74/777 (9%)

Query: 17   TPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
            T  +S +  C +   L   + IHS   ++G  ++  + N L++   +  GD+  A ++F 
Sbjct: 386  TTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMY-ARCGDLPRARELFN 444

Query: 74   KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
             +P+  +  WN +I GY+R +     + +Y  M    V+P   TF  LL   T   A   
Sbjct: 445  TMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSD 504

Query: 134  GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
            GK +H  +L+ G  S+  + NAL++ Y  CG +  A+ +F+ +   D+++WN+M +G+ +
Sbjct: 505  GKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQ 564

Query: 194  VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
               ++   KLF EM+++G+ P  +T   VL  C   + L++G++ H  + E  +  ++ L
Sbjct: 565  HGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNL 624

Query: 254  ENALTDM-------------------------------YAACGEMGFALEIFGNIKN--- 279
             NAL +M                               +A  GE   A E+F  ++N   
Sbjct: 625  GNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGF 684

Query: 280  -----------------------KDVIS-------------WTAIVTGYINRGQVDMARQ 303
                                   K VI+               A+++ Y   G +  AR+
Sbjct: 685  KPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARK 744

Query: 304  YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
             FD+MP RD + W  MI GY +      AL    +MQ   +  ++F+ VSIL AC++  A
Sbjct: 745  VFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSA 804

Query: 364  LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
            LE G+ V   I K K++ D+ VG ALI MY KCG +E+AQ VF     K+  TW AMI  
Sbjct: 805  LEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINA 864

Query: 424  LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
             A +G   K+LD F+ M +  I PD  T+  +LSAC H+G+V EG   F+ +  QHG+ P
Sbjct: 865  YAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSP 924

Query: 484  NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
               HYGC+V LLGRAG   EA  +I  MP  P++ VW  LLGACR+H +  +AE AA   
Sbjct: 925  TIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNA 984

Query: 544  LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
            L+L+  N AVYVLL N+YAA  RWD+  ++R+++  RGI+K PG S IE++ ++HEF+A 
Sbjct: 985  LKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAA 1044

Query: 604  DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
            D+SHP+T EIY +L  ++ +++  GY PD   V  ++ +E +E ++  HSE+LA+A+GL+
Sbjct: 1045 DRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLL 1104

Query: 664  SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             + PG  IRI KNLR+C DCH  +K +S +  RE+I RD  RFH FK+G CSC+D+W
Sbjct: 1105 KTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  235 bits (600), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 238/506 (47%), Gaps = 34/506 (6%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           PP  +T    L+    T   + + K+IH   +  GL ++  V   L T      GD+  A
Sbjct: 281 PPDKVTY-INLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFV-RCGDVAGA 338

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            +         V ++N +I   ++   ++     Y  M    V  +  T+  +L   +  
Sbjct: 339 KQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTS 398

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            A+  G+ +H H+ + G  S V + N+LIS Y  CG++  AR +F+   K D+++WNA+ 
Sbjct: 399 KALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAII 458

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           +GY R +   E  KL+ +M+ +GV P  VT + +LSAC        GK  H  +    I 
Sbjct: 459 AGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIK 518

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            N  L NAL +MY  CG +  A  +F   + +D+ISW +++ G+   G            
Sbjct: 519 SNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGS----------- 567

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                               +  A  LF EM+   + PD+ T  S+L  C N  ALELG 
Sbjct: 568 --------------------YEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGR 607

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            +   I ++ ++ D+ +GNALI+MY +CG ++ A  VF  +  ++  +WTAMI G A  G
Sbjct: 608 QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQG 667

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
              K+ ++F QM      P + T+  +L AC  +  +DEG++  A + +  G E +    
Sbjct: 668 EDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHI-LNSGYELDTGVG 726

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMK 514
             ++    ++G + +A +V   MP +
Sbjct: 727 NALISAYSKSGSMTDARKVFDKMPNR 752



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 144/520 (27%), Positives = 260/520 (50%), Gaps = 41/520 (7%)

Query: 10  PSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           PS +T     IS +  C S  +L   K+IHS+ I+ G   +P VQN L+     +  D+ 
Sbjct: 181 PSKIT----YISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMY-GKCEDLP 235

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
            A +VF  I R  V  +NTM+  Y++    +  + ++  M    + PD  T+  LL  FT
Sbjct: 236 SARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFT 295

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
               ++ GK +H   +  G +S + V  AL + +  CG+V  A+   +     DVV +NA
Sbjct: 296 TPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNA 355

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + +   +   ++E  + + +M   GV+    T + VL+AC+  K L  G+  H ++ E  
Sbjct: 356 LIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVG 415

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              ++ + N+L  MYA CG++  A E+F  +  +D+ISW AI+ GY  R           
Sbjct: 416 HSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARR----------- 464

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
              +R                   EA+ L+++MQ+  ++P   T + +L+AC N  A   
Sbjct: 465 --EDRG------------------EAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSD 504

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+ +   I ++ +K++  + NAL++MY +CG + +AQ VF     +D  +W +MI G A 
Sbjct: 505 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQ 564

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G  + +  +F +M +  + PD++T+  VL  C +   ++ GR+    + I+ G++ +  
Sbjct: 565 HGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHM-LIIESGLQLDVN 623

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
               ++++  R G L +A EV  ++  + N + W A++G 
Sbjct: 624 LGNALINMYIRCGSLQDAYEVFHSLRHR-NVMSWTAMIGG 662



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 145/593 (24%), Positives = 279/593 (47%), Gaps = 56/593 (9%)

Query: 4   NSSISPPSTLTQETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC-- 58
           +++  P  T T     +  ++ C    S+ + K+IH+Q ++ G+  +  + N L+     
Sbjct: 70  SNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVK 129

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           C    D   A +VF K+PR  V  WN++I  Y++    K    ++ +M  +   P   T+
Sbjct: 130 CRSVSD---AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITY 186

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             +L        +E+GK++H  +++ G+     VQN+L++ Y  C ++  AR +F   Y+
Sbjct: 187 ISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYR 246

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            DVV++N M   Y +    +E   LFG+M  +G+ P  VT + +L A      LD GKR 
Sbjct: 247 RDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRI 306

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H+      +  ++ +  AL  M+  CG++  A +      ++DV+ + A++      G  
Sbjct: 307 HKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGH- 365

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                                         + EA   + +M++  +  +  T +S+L AC
Sbjct: 366 ------------------------------YEEAFEQYYQMRSDGVVMNRTTYLSVLNAC 395

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           +   AL  GE + ++I +    +D+ +GN+LI MY +CGD+ +A+ +F  M ++D  +W 
Sbjct: 396 STSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWN 455

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           A+I G A      +++ ++ QM    + P  VT++ +LSACT++    +G+    D+ ++
Sbjct: 456 AIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDI-LR 514

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
            GI+ N      ++++  R G + EA  V +    + + I W +++     H      E 
Sbjct: 515 SGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRAR-DIISWNSMIAG---HAQHGSYEA 570

Query: 539 AAKQILE-----LDPDNEAVYVLLCNIYAACNRWDNF---RELRQMILDRGIK 583
           A K  LE     L+PD     +   ++   C   +     R++  +I++ G++
Sbjct: 571 AYKLFLEMKKEGLEPDK----ITFASVLVGCKNPEALELGRQIHMLIIESGLQ 619



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 214/475 (45%), Gaps = 34/475 (7%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           L++  TR  ++   K +H  +++ G    +F+ N LI+ Y  C  V  A  +F    + D
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRD 147

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           V++WN++ S Y +     +  +LF EM+  G +P+ +T + +L+AC    +L+ GK+ H 
Sbjct: 148 VISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHS 207

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
            + E     +  ++N+L +MY  C               +D+ S                
Sbjct: 208 KIIEAGYQRDPRVQNSLLNMYGKC---------------EDLPS---------------- 236

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           ARQ F  +  RD V +  M+  Y +     E + LF +M +  I PD+ T +++L A   
Sbjct: 237 ARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTT 296

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
              L+ G+ +        + +DI VG AL  M+ +CGDV  A++       +D   + A+
Sbjct: 297 PSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNAL 356

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I  LA +GH +++ + + QM    ++ +  TY+ VL+AC+ +  +  G E       + G
Sbjct: 357 IAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVG 415

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMA 539
              +      ++ +  R G L  A E+   MP K + I W A++ G  R     E  ++ 
Sbjct: 416 HSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAGYARREDRGEAMKLY 474

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
            +   E        ++ L +     + + + + + + IL  GIK     +   MN
Sbjct: 475 KQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMN 529


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/602 (42%), Positives = 380/602 (63%), Gaps = 5/602 (0%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV--SYK 178
           LL+ F     +   +++H  ++K     S+     +            A+ IF      K
Sbjct: 34  LLRNFNSPFEL---RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQK 90

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            +   WN+            +   LF  + +  V P + T   VL AC  L DL  G+  
Sbjct: 91  PETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRIL 150

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H  V++     NL L+N +  +YA+CGEMG A  +F  +  +DV++W  ++   I +G  
Sbjct: 151 HGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDH 210

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
           + A   F +MPER+   WT+MI GY++  + +EA+ LF +M+ + ++ +E T+V++L AC
Sbjct: 211 EGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAAC 270

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A+LGAL+LG  +  Y +++  K ++ + N LIDMY KCG +E+A +VF EM  +   +W+
Sbjct: 271 ADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWS 330

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           AMI GLA++G  +++L +FS M +  I P+ VT++G+L AC+H G++ EGR +FA MT  
Sbjct: 331 AMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD 390

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           +GI P   HYGCMVDLL RAG L+EA E I NMPMKPN +VWGALLGACRVH++ EMAE 
Sbjct: 391 YGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEE 450

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           A K +LELDP N+  YV+L NIYA   RW++   +R+ + DR +KKTPG S I ++GVVH
Sbjct: 451 AIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVH 510

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
           EFVAG++SHP T++I+ + +E+  +++  GY+P+ S V LD+ E +K + V +HSEKLA+
Sbjct: 511 EFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLAL 570

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
            FGL+++     IRI+KNLR+C DCH   KL+S + +RE++VRD+ RFH F   SCSC+D
Sbjct: 571 VFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRD 630

Query: 719 YW 720
           YW
Sbjct: 631 YW 632



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 132/276 (47%), Gaps = 9/276 (3%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           ++GD + A  +F ++P  +V  W +MI GY +    K  + ++  M ++ V+ +  T   
Sbjct: 206 KQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVA 265

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +L       A++ G  +H +  + GF  +V + N LI  Y  CG ++ A  +F+   +  
Sbjct: 266 VLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERT 325

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH- 239
           VV+W+AM  G     + +E  +LF +M + G+ P  VT + +L AC+ +  +  G+R   
Sbjct: 326 VVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFA 385

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQV 298
              ++  I+P +     + D+ +  G +  A E   N+  K + + W A++        V
Sbjct: 386 SMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNV 445

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRV--NRFREA 332
           +MA +    + E D      + DGY  V  N + EA
Sbjct: 446 EMAEEAIKHLLELD-----PLNDGYYVVLSNIYAEA 476


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/714 (38%), Positives = 409/714 (57%), Gaps = 39/714 (5%)

Query: 10  PSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           PS +T     +  ++ C S   LK   + H+Q IK+G +++  +   LV+    + G M 
Sbjct: 160 PSIIT----FLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYV-KGGSMD 214

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
            A +VF  + +  V  +N MI GY++    +    ++  M +   +P+  +F  +L G +
Sbjct: 215 GARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCS 274

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
              A+ +GK +H   +  G    V V  ALI  Y  CG ++ AR +FD     DVV+W  
Sbjct: 275 TPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTV 334

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M  GY      ++   LF  M+ +G+ P  +T + +++ACA   DL + +  H  V    
Sbjct: 335 MIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAG 394

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              +L+++ AL  MYA CG +            KD                   ARQ FD
Sbjct: 395 FGTDLLVDTALVHMYAKCGAI------------KD-------------------ARQVFD 423

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
            M  RD V W+AMI  Y+      EA   F  M+ +N+ PD  T +++L AC +LGAL+L
Sbjct: 424 AMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDL 483

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G  + T   K  + + I VGNALI+M  K G +E+A+ +F  M+++D  TW  MI G ++
Sbjct: 484 GMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSL 543

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G+  ++LD+F +ML+    P+ VT+VGVLSAC+  G V+EGR +F+ +    GI P   
Sbjct: 544 HGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTME 603

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
            YGCMVDLLGRAG L+EA  +I  MP+KPNS +W  LL ACR++ + ++AE AA++ L  
Sbjct: 604 LYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMS 663

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           +P + AVYV L ++YAA   W+N  ++R+++  RG++K  GC+ IE+ G +H FV  D+S
Sbjct: 664 EPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRS 723

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           HPQ  EIY +L  + + +K  GY+P    V  +VGE++KE A+  HSEKLA+A+G++S  
Sbjct: 724 HPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLP 783

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            G  IRI KNLR+C DCH  +K +S V  RE+I RD +RFHHFK+G CSC DYW
Sbjct: 784 SGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/546 (26%), Positives = 246/546 (45%), Gaps = 84/546 (15%)

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            GK++  H+++ G   +++  N LI  + +CG +  AR  FD      VVTWNA+ +GY 
Sbjct: 79  LGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYA 138

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           ++    E   LF +M  + + P+ +T ++VL AC+    L +GK  H  V +   V +  
Sbjct: 139 QLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFR 198

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM---- 308
           +  AL  MY   G M  A ++F  +  +DV ++  ++ GY   G  + A Q F +M    
Sbjct: 199 IGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEG 258

Query: 309 --PER---------------------------------DYVLWTAMIDGYLRVNRFREAL 333
             P R                                 D  + TA+I  Y+       A 
Sbjct: 259 FKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGAR 318

Query: 334 TLFREM----------------QTSNI---------------RPDEFTIVSILTACANLG 362
            +F +M                + SNI               +PD  T + I+ ACA+  
Sbjct: 319 RVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSA 378

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            L L   + + + +     D+ V  AL+ MY KCG ++ A++VF  M R+D  +W+AMI 
Sbjct: 379 DLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIG 438

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
               NG G+++ + F  M R ++ PD VTY+ +L+AC H G +D G E +    I+  + 
Sbjct: 439 AYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQ-AIKADLV 497

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA-EMAEMAAK 541
            +      ++++  + G +  A  + +NM ++ + + W  ++G   +H +A E  ++  +
Sbjct: 498 SHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGNAREALDLFDR 556

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM---ILD-RGIKKTP---GCSMIEMN 594
            + E    N   +V    + +AC+R     E R+    +LD RGI  T    GC M+++ 
Sbjct: 557 MLKERFRPNSVTFV---GVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGC-MVDLL 612

Query: 595 GVVHEF 600
           G   E 
Sbjct: 613 GRAGEL 618



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 163/381 (42%), Gaps = 72/381 (18%)

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           S T V +   C  L+D  +GK+   ++ +     N+   N L  +++ CG M  A + F 
Sbjct: 61  SRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFD 120

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER------------------------ 311
           +++NK V++W AI+ GY   G V  A   F QM +                         
Sbjct: 121 SVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKL 180

Query: 312 ---------------DYVLWTAMIDGYLRVNRFREALTLF-----REMQTSNI------- 344
                          D+ + TA++  Y++      A  +F     R++ T N+       
Sbjct: 181 GKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAK 240

Query: 345 -------------------RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
                              +P+  + +SIL  C+   AL  G+ V        + +D+ V
Sbjct: 241 SGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRV 300

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
             ALI MY  CG +E A+RVF +M  +D  +WT MI G A N + + +  +F+ M    I
Sbjct: 301 ATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGI 360

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
            PD +TY+ +++AC  +  +   RE  + + ++ G   +      +V +  + G + +A 
Sbjct: 361 QPDRITYIHIINACASSADLSLAREIHSQV-VRAGFGTDLLVDTALVHMYAKCGAIKDAR 419

Query: 506 EVIKNMPMKPNSIVWGALLGA 526
           +V   M  + + + W A++GA
Sbjct: 420 QVFDAMS-RRDVVSWSAMIGA 439



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 94/190 (49%), Gaps = 2/190 (1%)

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           D  T V +   C  L    LG+ V+ +I ++  + +I+  N LI ++  CG++ +A++ F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
             +  K   TW A+I G A  GH  ++  +F QM+  ++ P  +T++ VL AC+    + 
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            G+E+ A + I+ G   +      +V +  + G ++ A +V   +  K +   +  ++G 
Sbjct: 180 LGKEFHAQV-IKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL-YKRDVSTFNVMIGG 237

Query: 527 CRVHRDAEMA 536
                D E A
Sbjct: 238 YAKSGDGEKA 247


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/713 (38%), Positives = 404/713 (56%), Gaps = 40/713 (5%)

Query: 48  PTVQNKLVTFCC-----SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLI 102
           P  Q  + T+       ++ G +  A  VF ++P      W  M+ G +R+      + +
Sbjct: 90  PAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKM 149

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           +LDM+   + P  +T   +L       A   G+++H  V+K G  S V V N++++ Y  
Sbjct: 150 FLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGK 209

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL--------- 213
           CG+ + AR +F+   +  V +WNAM S    + + D    LF  M  + ++         
Sbjct: 210 CGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGY 269

Query: 214 -----------------------PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
                                  P   TI  VLSACA L  + +GK+ H Y+   ++   
Sbjct: 270 NQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYI 329

Query: 251 LILENALTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
             + NAL  MYA  G +  A  +     + + +VIS+TA++ GY+  G +  AR+ FD M
Sbjct: 330 GQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVM 389

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
             RD V WTAMI GY +     EA+ LFR M  S   P+ +T+ ++L+ CA+L  LE G+
Sbjct: 390 SNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGK 449

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF-REMLRKDKFTWTAMIVGLAIN 427
            +     ++  +    V N+++ MY + G +  A+RVF R   RK+  TWT+MIV LA +
Sbjct: 450 QIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQH 509

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G G+ ++ +F +MLR  + PD +T+VGVLSACTH G VDEG+ YF  +  +HGI P  +H
Sbjct: 510 GLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSH 569

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y CMVDLL RAG  +EA E I+ MP++P++I WG+LL ACRVH++A++AE+AA+++L +D
Sbjct: 570 YACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSID 629

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P N   Y  L N+Y+AC RW++  ++ +   D+ +KK  G S   +   VH F A D  H
Sbjct: 630 PGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLH 689

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           PQ   +Y    +M  D+K  G++PD+  V  DV +E KE  + +HSEKLA+AFGL+S+  
Sbjct: 690 PQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPE 749

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             T+RI+KNLR+C DCH   K +S V DRE+I+RD TRFHHFK G CSCKDYW
Sbjct: 750 KTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 203/495 (41%), Gaps = 111/495 (22%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+  T  T ++S     E+    +++HS  +KLGL +   V N ++     + GD + A 
Sbjct: 160 PTQFTL-TNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNM-YGKCGDAETAR 217

Query: 70  KVFRKIPRPSVCLWNTM-------------------------------IKGYSRIDSHKN 98
            VF ++P  SV  WN M                               I GY++   +  
Sbjct: 218 AVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAK 277

Query: 99  GVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALI 157
            +  +  ML  S + PD +T   +L        V  GK++H ++L+        V NALI
Sbjct: 278 ALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALI 337

Query: 158 STYCLCGEVDMARGI---------------------------------FDVSYKDDVVTW 184
           S Y   G V+ ARG+                                 FDV    DVV W
Sbjct: 338 SMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAW 397

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
            AM  GY++    DE  +LF  M R G  P S T+  VLS CA L  L+ GK+ H     
Sbjct: 398 TAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIH----- 452

Query: 245 CKIVPNL-----ILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQV 298
           CK + +L      + N++  MYA  G + +A  +F  +   K+ ++WT+++      G  
Sbjct: 453 CKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLG 512

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
           +                               +A+ LF EM    ++PD  T V +L+AC
Sbjct: 513 E-------------------------------DAVGLFEEMLRVGVKPDRITFVGVLSAC 541

Query: 359 ANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFT 416
            ++G ++ G+ + +   DK+ +  ++     ++D+  + G   +AQ   ++M +  D   
Sbjct: 542 THVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIA 601

Query: 417 WTAMIVGLAINGHGD 431
           W +++    ++ + D
Sbjct: 602 WGSLLSACRVHKNAD 616



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 140/291 (48%), Gaps = 39/291 (13%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF-----ALEIFGN 276
           +L  C    +   G+  H    +  ++ +  L N L   YA     G      A  +F  
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 277 I--KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
           I    ++V +W ++++ Y   G++  AR  F +MPERD V WT M+ G  RV RF EA+ 
Sbjct: 89  IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           +F +M T  + P +FT+ ++L++CA   A  +G  V +++ K  + + + V N++++MY 
Sbjct: 149 MFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYG 208

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAM-------------------------------IVG 423
           KCGD E A+ VF  M  +   +W AM                               I G
Sbjct: 209 KCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAG 268

Query: 424 LAINGHGDKSLDMFSQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
              NG   K+L  FS+ML  +++ PDE T   VLSAC + GMV  G++  A
Sbjct: 269 YNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHA 319


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/565 (44%), Positives = 352/565 (62%), Gaps = 31/565 (5%)

Query: 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
           + +    C  +  A  IF      ++ TWN M  GY   +      +L+ +M    + P 
Sbjct: 80  IFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPD 139

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           + T   +L A AKL D+  G++ H           + ++N L  MYAACG          
Sbjct: 140 THTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACG---------- 189

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
                                  + A + F+ M ER+ V W ++I+GY    R  EALTL
Sbjct: 190 ---------------------HAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTL 228

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
           FREM    + PD FT+VS+L+ACA LGAL LG     Y+ K  +  ++  GNAL+D+Y K
Sbjct: 229 FREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAK 288

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG + +A +VF EM  K   +WT++IVGLA+NG G ++L++F ++ R  ++P E+T+VGV
Sbjct: 289 CGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGV 348

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           L AC+H GMVDEG +YF  M  ++GI P   HYGCMVDLLGRAG + +A E I+NMPM+P
Sbjct: 349 LYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQP 408

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           N++VW  LLGAC +H    + E+A  Q+L+L+P +   YVLL N+YA+  RW +  ++R+
Sbjct: 409 NAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRR 468

Query: 576 MILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
            +L  G+KKTPG S++E+   +HEFV GD+SHPQT+EIY+KL E+T  LK  GY+P IS 
Sbjct: 469 TMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISN 528

Query: 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
           V  D+ EE+KE A+  HSEK+A+AF LI++  G+ IR+VKNLR+C DCH   KL+S V+D
Sbjct: 529 VLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFD 588

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           RE++VRD++RFHHFK G CSCKDYW
Sbjct: 589 REIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 230/427 (53%), Gaps = 39/427 (9%)

Query: 8   SPPSTLTQETPLISPIETC-ESMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCCSEKGDM 65
           SP S + ++   I+ + +C  S  + +QIH+ +I+ G+ LTNP +   L+    S    M
Sbjct: 33  SPKSYILKKC--IALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPM 90

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
            YA ++F +I  P++  WNTMI+GY+  ++    + +Y  M  S + PD +T+PFLLK  
Sbjct: 91  SYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAI 150

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
            + + V  G+++H   ++ GF+S VFVQN L+  Y  CG  + A  +F++  + ++VTWN
Sbjct: 151 AKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWN 210

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           ++ +GY    + +E   LF EM  +GV P   T+V +LSACA+L  L +G+RAH Y+ + 
Sbjct: 211 SVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKV 270

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
            +  NL   NAL D+YA CG +  A ++F  ++ K V+SWT+++ G              
Sbjct: 271 GLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVG-------------- 316

Query: 306 DQMPERDYVLWTAMIDGYLRVNRF-REALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                             L VN F +EAL LF+E++   + P E T V +L AC++ G +
Sbjct: 317 ------------------LAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMV 358

Query: 365 ELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIV 422
           + G ++ K   ++  +   I     ++D+  + G V++A    + M ++ +   W  ++ 
Sbjct: 359 DEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLG 418

Query: 423 GLAINGH 429
              I+GH
Sbjct: 419 ACTIHGH 425


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 278/705 (39%), Positives = 396/705 (56%), Gaps = 35/705 (4%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            +S +  C S   L   ++IH + ++ GL  + TV N L++   ++ G ++ A +VF  +
Sbjct: 132 FVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMY-AKCGSVRDARRVFDAM 190

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  W T+   Y+     +  +  Y  ML+  VRP   T+  +L       A+E GK
Sbjct: 191 ASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGK 250

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H H+++  + S V V  AL   Y  CG    AR +F+     DV+ WN M  G+    
Sbjct: 251 QIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSG 310

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           Q +E    F  M  +GV P   T   VLSACA+   L  GK  H    +  +V ++   N
Sbjct: 311 QLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGN 370

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           AL +MY+  G M            KD                   ARQ FD+MP+RD V 
Sbjct: 371 ALINMYSKAGSM------------KD-------------------ARQVFDRMPKRDVVS 399

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           WT ++  Y   ++  E+ T F++M    ++ ++ T + +L AC+N  AL+ G+ +   + 
Sbjct: 400 WTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVV 459

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
           K  +  D+ V NAL+ MY KCG VE A RVF  M  +D  TW  +I GL  NG G ++L 
Sbjct: 460 KAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQ 519

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
            +  M    + P+  T+V VLSAC    +V+EGR  FA M+  +GI P E HY CMVD+L
Sbjct: 520 RYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDIL 579

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
            RAGHL EA +VI  +P+KP++ +WGALL ACR+H + E+ E AA+  L+L+P N  +YV
Sbjct: 580 ARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYV 639

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
            L  IYAA   W +  +LR+ + +RG+KK PG S IE+ G VH FVA D+SHP+T+EIY 
Sbjct: 640 SLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYA 699

Query: 616 KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
           +L+ +   +K +GY+PD   V  D+ +E KERAV  HSEKLA+A+GLIS+ PG  IRI K
Sbjct: 700 ELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISK 759

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH   K +S +  RE+I RD  RFHHFK+G CSC DYW
Sbjct: 760 NLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 203/426 (47%), Gaps = 35/426 (8%)

Query: 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
           VL YL      V  D+Y +  LL+   +   +  GK++H H+L+ G   +V++ N L+  
Sbjct: 15  VLQYLHRKGPQV--DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKL 72

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
           Y  CG V+ AR +FD      VV+WN M SGY       E   LF  M+++ + P   T 
Sbjct: 73  YAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTF 132

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
           V +LSAC+    L+ G+  H  V E  +  +  + NAL  MYA CG +  A  +F  + +
Sbjct: 133 VSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMAS 192

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           +D +SWT +   Y   G  +                               E+L  +  M
Sbjct: 193 RDEVSWTTLTGAYAESGYGE-------------------------------ESLKTYHAM 221

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
               +RP   T +++L+AC +L ALE G+ +  +I +++  +D+ V  AL  MY KCG  
Sbjct: 222 LQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAF 281

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           + A+ VF  +  +D   W  MI G   +G  +++   F +ML   + PD  TY  VLSAC
Sbjct: 282 KDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSAC 341

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
              G +  G+E  A    + G+  +      ++++  +AG + +A +V   MP K + + 
Sbjct: 342 ARPGGLARGKEIHARAA-KDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVS 399

Query: 520 WGALLG 525
           W  LLG
Sbjct: 400 WTTLLG 405



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 175/362 (48%), Gaps = 39/362 (10%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           + RKG    S   V +L +C K KDL VGK+ H ++  C + PN+ + N L  +YA CG 
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +  A ++F    NK V+SW  +++GY +RG                              
Sbjct: 79  VNEARQLFDKFSNKSVVSWNVMISGYAHRGLA---------------------------- 110

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
              +EA  LF  MQ   + PD+FT VSIL+AC++   L  G  +   + +  + ND  VG
Sbjct: 111 ---QEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVG 167

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           NALI MY KCG V  A+RVF  M  +D+ +WT +    A +G+G++SL  +  ML+  + 
Sbjct: 168 NALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVR 227

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P  +TY+ VLSAC     +++G++  A + ++     +      +  +  + G   +A E
Sbjct: 228 PSRITYMNVLSACGSLAALEKGKQIHAHI-VESEYHSDVRVSTALTKMYMKCGAFKDARE 286

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAAC 564
           V + +  + + I W  ++         E A     ++LE  + PD  A Y     + +AC
Sbjct: 287 VFECLSYR-DVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPD-RATYT---TVLSAC 341

Query: 565 NR 566
            R
Sbjct: 342 AR 343


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/625 (42%), Positives = 383/625 (61%), Gaps = 42/625 (6%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCG-----EVDMARGIFDVSYKDDVVTWNAMFS 189
           K+ H  +L+ G     ++  +L+ +Y           + +  +FD   K +V  WN M  
Sbjct: 51  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH---------- 239
                 +  +   L+ EM      P   T   VL AC+    +  G + H          
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 170

Query: 240 ----------------RYVKECKIVPN------LILENALTDMYAACGEMGFALEIFGNI 277
                           R V+  +I+ +       +  NA+ D Y   GE+  A E+F  +
Sbjct: 171 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 230

Query: 278 KNKDVIS-WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
            ++ +IS W A+++G+   G V++AR++FD+M ERD + W+AMIDGY++   F EAL +F
Sbjct: 231 PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIF 290

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            +MQ   IRP +F + S+L+ACANLGAL+ G W+ TY  +N ++ D  +G +L+DMY KC
Sbjct: 291 HQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC 350

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G ++ A  VF +M  K+  +W AMI GLA++G  + ++D+FS+M    I P+E+T+VGVL
Sbjct: 351 GRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVL 407

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           +AC H G+V +G   F  M  ++G+EP   HYGC+VDLLGRAG L EA +V+ ++P +P 
Sbjct: 408 NACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPT 467

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
             VWGALLGACR H + E+ E   K +LEL+P N   Y LL NIYA   RW+   E+R++
Sbjct: 468 PAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKL 527

Query: 577 ILDRGIKKTPGCSMIEMN-GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
           + +RGIK TPG S+I++  G VH+F+ GD SHPQ K+IY  LD++   L+  GY PD S+
Sbjct: 528 MKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQ 587

Query: 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
           V  D+ EE+KE AV+QHSEKLA+ FGLI++ PG TIRIVKNLR+C DCH   KL+S VY+
Sbjct: 588 VLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYN 647

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           RE+IVRD+ R+HHF++G+CSCKD+W
Sbjct: 648 REIIVRDRIRYHHFRNGACSCKDFW 672



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 139/557 (24%), Positives = 225/557 (40%), Gaps = 147/557 (26%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLV----TFCCSEKGDMKYACKVFRKIPRPSVCLW 83
           S+H LKQ H+  ++ G L +  +   LV        +     + + +VF  + +P+V LW
Sbjct: 46  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 105

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           N MIK     +     +L+Y +M+ +  RP+ YT+P +LK  +    V  G ++H H++K
Sbjct: 106 NCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVK 165

Query: 144 FGFDSSVFV--------------------------------QNALISTYCLCGEVDMARG 171
            G      +                                 NA+I  Y   GEV+ AR 
Sbjct: 166 HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARE 225

Query: 172 IFD-VSYKDDVVTWNAMFSGYKRVKQ-------FDETR---------------------- 201
           +F+ +  +  + TWNAM SG+ R          FDE +                      
Sbjct: 226 LFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFME 285

Query: 202 --KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             ++F +M+++ + P    +  VLSACA L  LD G+  H Y K   I  + +L  +L D
Sbjct: 286 ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVD 345

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA CG +  A E+F  + NK+V SW A++ G    G                       
Sbjct: 346 MYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHG----------------------- 382

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-K 378
                   R  +A+ LF +M   +I P+E T V +L ACA+ G ++ G  +   + K   
Sbjct: 383 --------RAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYG 431

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           V+  I     ++D+  + G + +A++V                                 
Sbjct: 432 VEPQIEHYGCIVDLLGRAGLLTEAEKV--------------------------------- 458

Query: 439 QMLRASIIPDEVT---YVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDL 494
                S IP E T   +  +L AC   G V+ G E    + ++  +EP N   Y  + ++
Sbjct: 459 ----VSSIPTEPTPAVWGALLGACRKHGNVELG-ERVGKILLE--LEPQNSGRYTLLSNI 511

Query: 495 LGRAGHLNEALEVIKNM 511
             +AG   E  EV K M
Sbjct: 512 YAKAGRWEEVGEVRKLM 528



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 125/288 (43%), Gaps = 8/288 (2%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A + F ++       W+ MI GY +       + I+  M K  +RP  +  P +L
Sbjct: 250 GMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVL 309

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
                  A++ G+ +H +  +        +  +L+  Y  CG +D+A  +F+     +V 
Sbjct: 310 SACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVS 369

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNAM  G     + ++   LF +M+   + P  +T V VL+ACA    +  G      +
Sbjct: 370 SWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSM 426

Query: 243 -KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDM 300
            KE  + P +     + D+    G +  A ++  +I  +   + W A++      G V++
Sbjct: 427 RKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVEL 486

Query: 301 AR---QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                +   ++  ++   +T + + Y +  R+ E   + + M+   I+
Sbjct: 487 GERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIK 534


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/697 (38%), Positives = 409/697 (58%), Gaps = 37/697 (5%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           +++GDM  +C+ F ++P+     W TMI GY  I  +   + I  +M++  + P  +T  
Sbjct: 91  AKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLT 150

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYK 178
            +L        +E GK++H  ++K G   +V V N+L++ Y  CG+  MA+ +FD +  K
Sbjct: 151 NVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVK 210

Query: 179 D------------------------------DVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           D                              D+VTWN+M SGY +         +F +M 
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKML 270

Query: 209 RKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           R  +L P   T+  VLSACA L+ L +G++ H ++       + I+ NAL  MY+ CG +
Sbjct: 271 RDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGV 330

Query: 268 GFALEIFGNIKNKD--VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
             A  +      KD  +  +TA++ GYI  G ++ A+  FD + +RD V WTAMI GY +
Sbjct: 331 ETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQ 390

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
              + EA+ LFR M     RP+ +T+ ++L+  ++L +L  G+ +     K+     + V
Sbjct: 391 HGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSV 450

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
            NALI MY K G +  A R F +++R  +D  +WT+MI+ LA +GH +++L++F  ML  
Sbjct: 451 SNALITMYAKAGSITSASRAF-DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLME 509

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            + PD +TYVGV SACTH G+V++GR+YF  M     I P  +HY CMVDL GRAG L E
Sbjct: 510 GLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQE 569

Query: 504 ALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563
           A E I+ MP++P+ + WG+LL ACRV+++ ++ ++AA+++L L+P+N   Y  L N+Y+A
Sbjct: 570 AQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSA 629

Query: 564 CNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSD 623
           C +W+   ++R+ + D  +KK  G S IE+   VH F   D  HPQ  EIY+ + ++  +
Sbjct: 630 CGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDE 689

Query: 624 LKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDC 683
           +K +GY+PD + V  D+ EE KE+ +  HSEKLA+AFGLIS+    T+RI+KNLR+C DC
Sbjct: 690 IKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDC 749

Query: 684 HRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           H   K +S +  RE+IVRD TRFHHFK G CSC+DYW
Sbjct: 750 HTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 143/532 (26%), Positives = 254/532 (47%), Gaps = 53/532 (9%)

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           N + K  ++ +      L++  ++KS +    Y    L+  +++      G  LH   L 
Sbjct: 18  NLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKT-----GYALHARKL- 71

Query: 144 FGFDS----SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
             FD     + F  N ++S Y   G++D +   FD   + D V+W  M  GYK + Q+ +
Sbjct: 72  --FDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHK 129

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             ++ GEM R+G+ P+  T+  VL++ A  + L+ GK+ H ++ +  +  N+ + N+L +
Sbjct: 130 AIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLN 189

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA CG+   A  +F  +  KD+ SW A++  ++  GQ+D+A   F+QM ERD V W +M
Sbjct: 190 MYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSM 249

Query: 320 IDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           I GY +      AL +F +M + S + PD FT+ S+L+ACANL  L +GE + ++I    
Sbjct: 250 ISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTG 309

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQR---------------------------------V 405
                 V NALI MY +CG VE A+R                                 +
Sbjct: 310 FDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNI 369

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F  +  +D   WTAMIVG   +G   +++++F  M+     P+  T   +LS  +    +
Sbjct: 370 FDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASL 429

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
             G++      ++ G   + +    ++ +  +AG +  A      +  + +++ W +++ 
Sbjct: 430 GHGKQIHGS-AVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMII 488

Query: 526 ACRVHRDAEMA-EMAAKQILE-LDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           A   H  AE A E+    ++E L PD    ++    +++AC       + RQ
Sbjct: 489 ALAQHGHAEEALELFETMLMEGLRPD----HITYVGVFSACTHAGLVNQGRQ 536



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 165/341 (48%), Gaps = 41/341 (12%)

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKE---CKIVPN-----LILENALTDMYAACG 265
           P  +++  +L  C  L    V K   R+  +   C+++ +     + L N L ++Y+  G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
               A ++F  +  +   SW  +++ Y  RG +D + ++FD++P+RD V WT MI GY  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
           + ++ +A+ +  EM    I P +FT+ ++L + A    LE G+ V ++I K  ++ ++ V
Sbjct: 124 IGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSV 183

Query: 386 GNALIDMYCKCGDVEKAQRV-------------------------------FREMLRKDK 414
            N+L++MY KCGD   A+ V                               F +M  +D 
Sbjct: 184 SNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDEGREYFA 473
            TW +MI G    G+  ++LDMFS+MLR S++ PD  T   VLSAC +   +  G +  +
Sbjct: 244 VTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHS 303

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
            + +  G + +      ++ +  R G +  A  +I+    K
Sbjct: 304 HI-VTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTK 343



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 134/569 (23%), Positives = 217/569 (38%), Gaps = 136/569 (23%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS--------- 60
           PS  T  T +++ +     +   K++HS  +KLGL  N +V N L+              
Sbjct: 144 PSQFTL-TNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKV 202

Query: 61  ---------------------EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNG 99
                                + G M  A   F ++    +  WN+MI GY++       
Sbjct: 203 VFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRA 262

Query: 100 VLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
           + ++  ML+ S + PD +T   +L        +  G+++H H++  GFD S  V NALIS
Sbjct: 263 LDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALIS 322

Query: 159 TYCLCGEVDMAR---------------------------------GIFDVSYKDDVVTWN 185
            Y  CG V+ AR                                  IFD     DVV W 
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWT 382

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           AM  GY++   + E   LF  M  +   P S T+  +LS  + L  L  GK+ H    + 
Sbjct: 383 AMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKS 442

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQY 304
             + ++ + NAL  MYA  G +  A   F  I+  +D +SWT+++      G  +     
Sbjct: 443 GEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE----- 497

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                                     EAL LF  M    +RPD  T V + +AC + G +
Sbjct: 498 --------------------------EALELFETMLMEGLRPDHITYVGVFSACTHAGLV 531

Query: 365 ELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
             G ++     D +K+   +     ++D++ + G +++AQ    +M              
Sbjct: 532 NQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM-------------- 577

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
                                I PD VT+  +LSAC     +D G+     + +   +EP
Sbjct: 578 --------------------PIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLL---LEP 614

Query: 484 -NEAHYGCMVDLLGRAGHLNEALEVIKNM 511
            N   Y  + +L    G   EA ++ K+M
Sbjct: 615 ENSGAYSALANLYSACGKWEEAAKIRKSM 643


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/625 (42%), Positives = 383/625 (61%), Gaps = 42/625 (6%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCG-----EVDMARGIFDVSYKDDVVTWNAMFS 189
           K+ H  +L+ G     ++  +L+ +Y           + +  +FD   K +V  WN M  
Sbjct: 52  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC-------------AKLKDLDVGK 236
                 +  +   L+ EM      P   T   VL AC             A L    +G 
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGG 171

Query: 237 RAH-------------RYVKECKIVPN------LILENALTDMYAACGEMGFALEIFGNI 277
             H             R V+  +I+ +       +  NA+ D Y   GE+  A E+F  +
Sbjct: 172 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 231

Query: 278 KNKDVIS-WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
            ++ +IS W A+++G+   G V++AR++FD+M ERD + W+AMIDGY++   F EAL +F
Sbjct: 232 PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIF 291

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            +MQ   IRP +F + S+L+ACANLGAL+ G W+ TY  +N ++ D  +G +L+DMY KC
Sbjct: 292 HQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC 351

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G ++ A  VF +M  K+  +W AMI GLA++G  + ++D+FS+M    I P+E+T+VGVL
Sbjct: 352 GRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVL 408

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           +AC H G+V +G   F  M  ++G+EP   HYGC+VDLLGRAG L EA +V+ ++P +P 
Sbjct: 409 NACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPT 468

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
             VWGALLGACR H + E+ E   K +LEL+P N   Y LL NIYA   RW+   E+R++
Sbjct: 469 PAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKL 528

Query: 577 ILDRGIKKTPGCSMIEMN-GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
           + +RGIK TPG S+I++  G VH+F+ GD SHPQ K+IY  LD++   L+  GY PD S+
Sbjct: 529 MKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQ 588

Query: 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
           V  D+ EE+KE AV+QHSEKLA+ FGLI++ PG TIRIVKNLR+C DCH   KL+S VY+
Sbjct: 589 VLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYN 648

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           RE+IVRD+ R+HHF++G+CSCKD+W
Sbjct: 649 REIIVRDRIRYHHFRNGACSCKDFW 673



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 140/557 (25%), Positives = 226/557 (40%), Gaps = 147/557 (26%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLV----TFCCSEKGDMKYACKVFRKIPRPSVCLW 83
           S+H LKQ H+  ++ G L +  +   LV        +     + + +VF  + +P+V LW
Sbjct: 47  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 106

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           N MIK     +     +L+Y +M+ +  RP+ YT+P +LK  +    V  G ++H H++K
Sbjct: 107 NCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVK 166

Query: 144 FGF--DSSVFVQ------------------------------NALISTYCLCGEVDMARG 171
            G   D  +                                 NA+I  Y   GEV+ AR 
Sbjct: 167 HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARE 226

Query: 172 IFD-VSYKDDVVTWNAMFSGYKRVKQ-------FDETR---------------------- 201
           +F+ +  +  + TWNAM SG+ R          FDE +                      
Sbjct: 227 LFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFME 286

Query: 202 --KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             ++F +M+++ + P    +  VLSACA L  LD G+  H Y K   I  + +L  +L D
Sbjct: 287 ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVD 346

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA CG +  A E+F  + NK+V SW A++ G    G                       
Sbjct: 347 MYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHG----------------------- 383

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-K 378
                   R  +A+ LF +M   +I P+E T V +L ACA+ G ++ G  +   + K   
Sbjct: 384 --------RAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYG 432

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           V+  I     ++D+  + G + +A++V                                 
Sbjct: 433 VEPQIEHYGCIVDLLGRAGLLTEAEKV--------------------------------- 459

Query: 439 QMLRASIIPDEVT---YVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDL 494
                S IP E T   +  +L AC   G V+ G E    + ++  +EP N   Y  + ++
Sbjct: 460 ----VSSIPTEPTPAVWGALLGACRKHGNVELG-ERVGKILLE--LEPQNSGRYTLLSNI 512

Query: 495 LGRAGHLNEALEVIKNM 511
             +AG   E  EV K M
Sbjct: 513 YAKAGRWEEVGEVRKLM 529



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 125/288 (43%), Gaps = 8/288 (2%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A + F ++       W+ MI GY +       + I+  M K  +RP  +  P +L
Sbjct: 251 GMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVL 310

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
                  A++ G+ +H +  +        +  +L+  Y  CG +D+A  +F+     +V 
Sbjct: 311 SACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVS 370

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNAM  G     + ++   LF +M+   + P  +T V VL+ACA    +  G      +
Sbjct: 371 SWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSM 427

Query: 243 -KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDM 300
            KE  + P +     + D+    G +  A ++  +I  +   + W A++      G V++
Sbjct: 428 RKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVEL 487

Query: 301 AR---QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                +   ++  ++   +T + + Y +  R+ E   + + M+   I+
Sbjct: 488 GERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIK 535


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/708 (37%), Positives = 412/708 (58%), Gaps = 36/708 (5%)

Query: 16  ETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           +   +S ++ C   E++ Q K++H++  ++GL T   V   L++   ++ G M+ A +VF
Sbjct: 306 KVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMY-TKCGSMEDALEVF 364

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             +   +V  W  MI G+++    +   L +  M++S + P+  TF  +L   +R  A++
Sbjct: 365 NLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALK 424

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G+++H  ++K G+ +   V+ AL+S Y  CG +  AR +F+   K +VV WNAM + Y 
Sbjct: 425 QGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYV 484

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           + +++D     F  + ++G+ P S T   +L+ C     L++GK     +       +L 
Sbjct: 485 QHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLH 544

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + NAL  M+  CG++  A+ +                               F+ MPERD
Sbjct: 545 IRNALVSMFVNCGDLMSAMNL-------------------------------FNDMPERD 573

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W  +I G+++    + A   F+ MQ S ++PD+ T   +L ACA+  AL  G  +  
Sbjct: 574 LVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHA 633

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            I +  +  D+ VG  LI MY KCG ++ A  VF  + +K+ ++WT+MI G A +G G +
Sbjct: 634 LITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKE 693

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L++F QM +  + PD +T+VG LSAC H G++ EG  +F  M     IEP   HYGCMV
Sbjct: 694 ALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMK-DFNIEPRMEHYGCMV 752

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRAG L+EA+E I  M +KP+S +WGALLGAC+VH D E+AE  A++ LELDP+++ 
Sbjct: 753 DLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDG 812

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
           VYV+L NIYAA   W    ++R+++LDRG+ K PG S IE++G VH F + DK+HPQ +E
Sbjct: 813 VYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEE 872

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I+ +L  +  ++K +GY+PD   V  DV + +KE A+  HSE+LA+A+GL+ + P   I 
Sbjct: 873 IHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIV 932

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I KNLR+C DCH   KL+S +  R++I RD  RFHHFK G CSC D+W
Sbjct: 933 ISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  252 bits (643), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 160/581 (27%), Positives = 268/581 (46%), Gaps = 92/581 (15%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G+   A ++F ++P   V  WN ++ GY +   ++    ++  M++  V+PD YTF ++L
Sbjct: 153 GNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYML 212

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
                   V+ G EL   +L  G+D+ +FV  ALI+ +  CG VD A  +F+   + D++
Sbjct: 213 NACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLI 272

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           TW +M +G  R +QF +   LF  ME +GV P  V  V +L AC   + L+ GKR H  +
Sbjct: 273 TWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM 332

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
           KE  +   + +  AL  MY  CG M  ALE+F  +K ++V+SWTA++ G+   G+++ A 
Sbjct: 333 KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAF 392

Query: 303 QYFDQM------PER---------------------------------DYVLWTAMIDGY 323
            +F++M      P R                                 D  + TA++  Y
Sbjct: 393 LFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMY 452

Query: 324 LRVNRFREALTLFREMQTSN-------------------------------IRPDEFTIV 352
            +     +A  +F  +   N                               I+PD  T  
Sbjct: 453 AKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFT 512

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           SIL  C +  ALELG+WV++ I +   ++D+ + NAL+ M+  CGD+  A  +F +M  +
Sbjct: 513 SILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPER 572

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D  +W  +I G   +G    + D F  M  + + PD++T+ G+L+AC     + EGR   
Sbjct: 573 DLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLH 632

Query: 473 ADMTIQHGIEPNEAHYGC-------MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           A +T        EA   C       ++ +  + G +++A  V  N+P K N   W +++ 
Sbjct: 633 ALIT--------EAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMIT 683

Query: 526 ACRVH-RDAEMAEMAAKQILE-LDPDNEAVYVLLCNIYAAC 564
               H R  E  E+  +   E + PD    ++      +AC
Sbjct: 684 GYAQHGRGKEALELFCQMQQEGVKPD----WITFVGALSAC 720



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 235/476 (49%), Gaps = 35/476 (7%)

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           N  +   S+       +L+ L +    ++    T+  LL+   +   +  G+ +H H+  
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
                 +F+ N LIS Y  CG  + A+ IFD     DV +WN +  GY + ++++E  +L
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
             +M + GV P   T V +L+ACA  K++D G      +       +L +  AL +M+  
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIK 252

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           CG +  AL++F N+  +D+I+WT+++TG        +AR                     
Sbjct: 253 CGGVDDALKVFNNLPRRDLITWTSMITG--------LARH-------------------- 284

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
               +F++A  LF+ M+   ++PD+   VS+L AC +  ALE G+ V   + +  +  +I
Sbjct: 285 ---RQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEI 341

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
           +VG AL+ MY KCG +E A  VF  +  ++  +WTAMI G A +G  +++   F++M+ +
Sbjct: 342 YVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIES 401

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            I P+ VT++ +L AC+    + +GR+   D  I+ G   ++     ++ +  + G L +
Sbjct: 402 GIEPNRVTFMSILGACSRPSALKQGRQ-IHDRIIKAGYITDDRVRTALLSMYAKCGSLMD 460

Query: 504 ALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLL 557
           A  V + +  K N + W A++ A   H   + A    + +L+  + PD+     +L
Sbjct: 461 ARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSIL 515



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 155/340 (45%), Gaps = 50/340 (14%)

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
            A ++   +  +  EA+ +   + + +I+    T  S+L  C     L  GE +  +I  
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           +K++ DIF+ N LI MY KCG+   A+++F EM  KD ++W  ++ G   +   +++  +
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
             QM++  + PD+ T+V +L+AC     VD+G E F+ + +  G + +      ++++  
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFS-LILNAGWDTDLFVGTALINMHI 251

Query: 497 RAGHLNEALEVIKNMP----------------------------------MKPNSIVWGA 522
           + G +++AL+V  N+P                                  ++P+ + + +
Sbjct: 252 KCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVS 311

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYV--LLCNIYAACNRWDNFRELRQMILDR 580
           LL AC      E  +    ++ E+  D E +YV   L ++Y  C   ++  E+  ++  R
Sbjct: 312 LLKACNHPEALEQGKRVHARMKEVGLDTE-IYVGTALLSMYTKCGSMEDALEVFNLVKGR 370

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
            +      S   M       +AG   H + +E +L  ++M
Sbjct: 371 NV-----VSWTAM-------IAGFAQHGRMEEAFLFFNKM 398


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 258/713 (36%), Positives = 419/713 (58%), Gaps = 8/713 (1%)

Query: 14  TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           T     +S +  C S+ Q ++IH++    GL +  ++ N LVT   +  G +  A ++F+
Sbjct: 108 TDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMY-ARFGSVGDAKRMFQ 166

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
            +       WN +I  +S+       + I+ +M K D++P++ T+  ++ GF+    +  
Sbjct: 167 SLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPE 225

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+++H  ++  GFDS + V  ALI+ Y  CG    AR +FD   K D+V+WN M   Y +
Sbjct: 226 GRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQ 285

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
              F E  +L+ +++ +G   T  T V +L AC+ +K L  G+  H ++ E  +   + +
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAV 345

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG---QVDMARQYFDQMPE 310
             AL +MYA CG +  A ++F  +KN+D ++W+ ++  Y + G       AR+ FD++  
Sbjct: 346 ATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGS 405

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELGEW 369
           RD + W AMI  Y++      A+ +FREM   + ++PD  T +++L ACA+LG L   + 
Sbjct: 406 RDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKA 465

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           +   I ++++++++ V N LI+MY +CG +E+A+R+F     K   +WTAM+   +  G 
Sbjct: 466 LHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGR 525

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
             ++LD+F +M    + PD+VTY  +L  CTH G +++G  YF DM   HG+ P   H+ 
Sbjct: 526 YAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFA 585

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
            MVDLLGR+G L +A E++++MP +P+ + W   L ACR+H   E+ E AA+++ ELDP 
Sbjct: 586 AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPS 645

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           + A Y+ + NIYAA   W+    +R+ + +RG+KK PG S IE++G +HEF +G K HP+
Sbjct: 646 STAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPR 705

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS-GPG 668
           T EI  +L  +   ++  GY+PD   V  DV E +KE  +  HSEK+A+AFGL+SS G G
Sbjct: 706 TDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSG 765

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH-GSCSCKDYW 720
             IR+VKNLR+C DCH   K ++ +  R++I+RD  RFH F   G CSC DYW
Sbjct: 766 EPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 141/549 (25%), Positives = 232/549 (42%), Gaps = 113/549 (20%)

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
           D +PDN TF  +L   +    V  G+ LH  +    F+    V NALIS Y  C  +  A
Sbjct: 2   DRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDA 61

Query: 170 RGIFDVS--YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
           R +F+     + +VV+WNAM + Y +     E   L+  M  +G+    VT V VL AC+
Sbjct: 62  RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121

Query: 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
            L     G+  H  V    +     L NAL  MYA  G +G A  +F +++ +D  SW A
Sbjct: 122 SLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNA 178

Query: 288 IVTGYINRGQVDMARQYFDQM--------------------PE----------------- 310
           ++  +   G    A + F +M                    PE                 
Sbjct: 179 VILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGF 238

Query: 311 -RDYVLWTAMIDGY-------------------------------LRVNRFREALTLFRE 338
             D V+ TA+I+ Y                               ++   F EAL L+++
Sbjct: 239 DSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQK 298

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           +     +  + T VSIL AC+++ AL  G  V ++I +  + +++ V  AL++MY KCG 
Sbjct: 299 LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGS 358

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD--------------------------- 431
           +E+A++VF  M  +D   W+ +I   A NG+G                            
Sbjct: 359 LEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTY 418

Query: 432 -------KSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
                   ++ +F +M  A+ + PD VT++ VL AC   G + E +   A ++ +  +E 
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQIS-ESELES 477

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA-CRVHRDAEMAEMAAKQ 542
           N      ++++  R G L EA E +     +   + W A++ A  +  R AE  ++  + 
Sbjct: 478 NVVVTNTLINMYARCGSLEEA-ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEM 536

Query: 543 ILE-LDPDN 550
            LE + PD+
Sbjct: 537 DLEGVKPDD 545



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 172/373 (46%), Gaps = 42/373 (11%)

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P +VT + VL +C+   D+  G+  H  ++  +   + ++ NAL  MY  C  +      
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSL------ 58

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP--ERDYVLWTAMIDGYLRVNRFRE 331
                                   VD AR  F+ M   +R+ V W AMI  Y +     E
Sbjct: 59  ------------------------VD-ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTE 93

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL L+  M    +  D  T VS+L AC++L     G  +   +  + + +   + NAL+ 
Sbjct: 94  ALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQSLANALVT 150

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY + G V  A+R+F+ +  +D+ +W A+I+  + +G    +L +F +M +  + P+  T
Sbjct: 151 MYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNSTT 209

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           Y+ V+S  +   ++ EGR+  A++ + +G + +      ++++ G+ G  +EA EV   M
Sbjct: 210 YINVISGFSTPEVLPEGRKIHAEI-VANGFDSDLVVATALINMYGKCGSSHEAREVFDKM 268

Query: 512 PMKPNSIVWGALLGACRVHRD--AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
             K + + W  ++G C V      E  E+  K  +E     +A +V +    ++      
Sbjct: 269 K-KRDMVSWNVMIG-CYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQ 326

Query: 570 FRELRQMILDRGI 582
            R +   IL+RG+
Sbjct: 327 GRLVHSHILERGL 339


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/790 (35%), Positives = 436/790 (55%), Gaps = 76/790 (9%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           S+++    + L  +   +   +   S+  L Q H+Q I  G   + ++  KL T   S+ 
Sbjct: 7   SSATAETTAALISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKL-TQRLSDL 65

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFL 121
           G + YA  +F  + RP V L+N +++G+S  +S  + + ++  + KS D++P++ T+ F 
Sbjct: 66  GAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFA 125

Query: 122 LK---GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
           +    GF  D A   G+ +H   +  G DS + + + ++  Y     V+ AR +FD   +
Sbjct: 126 ISAASGFRDDRA---GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPE 182

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKR 237
            D + WN M SGY++ + + E+ ++F ++  +       T +L +L A A+L++L +G +
Sbjct: 183 KDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQ 242

Query: 238 AHR--------------------YVKECKIV-----------PNLILENALTDMYAACGE 266
            H                     Y K  KI            P+++  NA+   Y + GE
Sbjct: 243 IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGE 302

Query: 267 MGFALEIF-------GNIKNKDVISW-----------------------------TAIVT 290
              +L +F         +++  ++S                              TA+ T
Sbjct: 303 TELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTT 362

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
            Y    +++ AR+ FD+ PE+    W AMI GY +     +A++LFREMQ S   P+  T
Sbjct: 363 VYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVT 422

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           I  IL+ACA LGAL LG+WV   +     ++ I+V  ALI MY KCG + +A+R+F  M 
Sbjct: 423 ITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMT 482

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
           +K++ TW  MI G  ++G G ++L++F +ML + I P  VT++ VL AC+H G+V EG E
Sbjct: 483 KKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDE 542

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            F  M  ++G EP+  HY CMVD+LGRAGHL  AL+ I+ M ++P S VW  LLGACR+H
Sbjct: 543 IFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIH 602

Query: 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590
           +D  +A   ++++ ELDPDN   +VLL NI++A   +     +RQ    R + K PG ++
Sbjct: 603 KDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTL 662

Query: 591 IEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVY 650
           IE+    H F +GD+SHPQ KEIY KL+++   ++  GY P+      DV EE++E  V 
Sbjct: 663 IEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVK 722

Query: 651 QHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFK 710
            HSE+LA+AFGLI++ PG  IRI+KNLR+C+DCH + KL+S + +R ++VRD  RFHHFK
Sbjct: 723 VHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFK 782

Query: 711 HGSCSCKDYW 720
            G CSC DYW
Sbjct: 783 DGVCSCGDYW 792


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 267/703 (37%), Positives = 398/703 (56%), Gaps = 33/703 (4%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+    T   + + K+IH  T++ GL ++  V   LVT C    GD+  A + F+ I   
Sbjct: 235 LLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCV-RCGDVDSAKQAFKGIADR 293

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            V ++N +I   ++   +      Y  M    V  +  T+  +L   +   A+E GK +H
Sbjct: 294 DVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIH 353

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
            H+ + G  S V + NALIS Y  CG++  AR +F    K D+++WNA+ +GY R +   
Sbjct: 354 SHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRG 413

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E  +L+ +M+ +GV P  VT + +LSACA       GK  H  +    I  N  L NAL 
Sbjct: 414 EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALM 473

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           +MY  CG +  A  +F   + +DVIS                               W +
Sbjct: 474 NMYRRCGSLMEAQNVFEGTQARDVIS-------------------------------WNS 502

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           MI G+ +   +  A  LF+EMQ   + PD  T  S+L+ C N  ALELG+ +   I ++ 
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESG 562

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           ++ D+ +GNALI+MY +CG ++ A+ VF  +  +D  +WTAMI G A  G   K++++F 
Sbjct: 563 LQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFW 622

Query: 439 QMLRASI-IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           QM       PD  T+  +LSAC H G+V EG + F+ M  ++G+ P   HYGC+V LLGR
Sbjct: 623 QMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGR 682

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
           A    EA  +I  MP  P++ VW  LLGACR+H +  +AE AA   L+L+  N AVY+LL
Sbjct: 683 ARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILL 742

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            N+YAA  RWD+  ++R+++  RGI+K PG S IE++ ++HEF+A D+SHP+T EIY +L
Sbjct: 743 SNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAEL 802

Query: 618 DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
             ++ +++  GY PD   V  D+G+  +E ++  HSE+LA+A+GLI + PG  IRI KNL
Sbjct: 803 KRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNL 862

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+C DCH  +K +S +  RE+I RD  RFH FK+G CSC+DYW
Sbjct: 863 RICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 145/548 (26%), Positives = 265/548 (48%), Gaps = 41/548 (7%)

Query: 9   PPSTLTQETPLISPIETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM 65
           P  T T     ++ ++ C     + + K+IH+Q ++ G+  +  + N L+      +  +
Sbjct: 20  PRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVL 79

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             A +VF+++PR  V  WN++I  Y++    K    ++ +M  +   P+  T+  +L   
Sbjct: 80  D-AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTAC 138

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
                +E GK++H  ++K G+     VQN+L+S Y  CG++  AR +F      DVV++N
Sbjct: 139 YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYN 198

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
            M   Y +     E   LFG+M  +G+ P  VT + +L A      LD GKR H+   E 
Sbjct: 199 TMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE 258

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ-VDMARQY 304
            +  ++ +  AL  M   CG++  A + F  I ++DV+ + A++      G  V+   QY
Sbjct: 259 GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQY 318

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           +                                 M++  +  +  T +SIL AC+   AL
Sbjct: 319 Y--------------------------------RMRSDGVALNRTTYLSILNACSTSKAL 346

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           E G+ + ++I ++   +D+ +GNALI MY +CGD+ KA+ +F  M ++D  +W A+I G 
Sbjct: 347 EAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGY 406

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A      +++ ++ QM    + P  VT++ +LSAC ++    +G+    D+ ++ GI+ N
Sbjct: 407 ARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDI-LRSGIKSN 465

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
                 ++++  R G L EA  V +    + + I W +++     H   E A    +++ 
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQ 524

Query: 545 --ELDPDN 550
             EL+PDN
Sbjct: 525 NEELEPDN 532



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 225/482 (46%), Gaps = 34/482 (7%)

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           D  T+  LL+  TR   +   K +H  +++ G    +F+ N LI+ Y  C  V  A  +F
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233
               + DV++WN++ S Y +     +  +LF EM+  G +P  +T + +L+AC    +L+
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
            GK+ H  + +     +  ++N+L  MY  CG++  A ++F  I  +DV+S+  ++  Y 
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
            +  V                               +E L LF +M +  I PD+ T ++
Sbjct: 206 QKAYV-------------------------------KECLGLFGQMSSEGISPDKVTYIN 234

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L A      L+ G+ +     +  + +DI VG AL+ M  +CGDV+ A++ F+ +  +D
Sbjct: 235 LLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRD 294

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
              + A+I  LA +GH  ++ + + +M    +  +  TY+ +L+AC+ +  ++ G+   +
Sbjct: 295 VVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHS 354

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRD 532
            ++ + G   +      ++ +  R G L +A E+   MP K + I W A++ G  R    
Sbjct: 355 HIS-EDGHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDR 412

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE 592
            E   +  +   E        ++ L +  A  + + + + + + IL  GIK     +   
Sbjct: 413 GEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANAL 472

Query: 593 MN 594
           MN
Sbjct: 473 MN 474


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/759 (36%), Positives = 417/759 (54%), Gaps = 71/759 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTF---CCSEKGDMKYACKVFRKIP--RPSVCLWNT-- 85
           + IH++ +K GLL +  + N L+++        G ++ A ++F +IP  R +V  WN+  
Sbjct: 46  RAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLL 105

Query: 86  -----------------------------MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
                                        M+ G +R       +   LDM      P  +
Sbjct: 106 SMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQF 165

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE----------- 165
           T   +L       A   G+++H  V+K G  S V V N++++ Y  CG+           
Sbjct: 166 TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 225

Query: 166 --------------------VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
                               +D+A  +F+      +V+WNAM +GY +     +  KLF 
Sbjct: 226 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 285

Query: 206 EM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
            M     + P   TI  VLSACA L ++ +GK+ H Y+   ++  N  + NAL   YA  
Sbjct: 286 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 345

Query: 265 GEMGFALEIFGNIKNKD--VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
           G +  A  I       D  VIS+TA++ GY+  G ++ AR+ F  M  RD V WTAMI G
Sbjct: 346 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 405

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           Y +  R  EA+ LFR M T    P+ +T+ ++L+ CA+L  L+ G+ +     ++ ++  
Sbjct: 406 YEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQS 465

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
             V NA+I MY + G    A+R+F ++  RK+  TWT+MIV LA +G G++++ +F +ML
Sbjct: 466 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 525

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
           RA + PD +TYVGVLSAC+H G V+EG+ Y+  +  +H I P  +HY CMVDLL RAG  
Sbjct: 526 RAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLF 585

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
           +EA E I+ MP++P++I WG+LL ACRVH++AE+AE+AA+++L +DP+N   Y  + N+Y
Sbjct: 586 SEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVY 645

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMT 621
           +AC RW +   + +   ++ ++K  G S   +   +H F A D  HPQ   +Y     M 
Sbjct: 646 SACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMW 705

Query: 622 SDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCV 681
            ++K  G++PD+  V  DV +E KE  + +HSEKLA+AFGLIS+    T+R++KNLR+C 
Sbjct: 706 EEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCN 765

Query: 682 DCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           DCH   K +S V DRE+IVRD TRFHHF+ G CSCKDYW
Sbjct: 766 DCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 159/342 (46%), Gaps = 40/342 (11%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA--ACGEMGF--ALEIFGNI 277
           +L  C    +   G+  H    +  ++ +  L N L   Y   A G  G   A  +F  I
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 278 --KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
               ++V +W ++++ +   G++  AR  F +MPERD V WT M+ G  R  RF EA+  
Sbjct: 92  PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
             +M      P +FT+ ++L++CA   A  +G  V +++ K  + + + V N++++MY K
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGK 211

Query: 396 CGDVEKAQRVFREM----------------------LRKDKF---------TWTAMIVGL 424
           CGD E A  VF  M                      L +  F         +W AMI G 
Sbjct: 212 CGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGY 271

Query: 425 AINGHGDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
             NG   K+L +FS+ML  +S+ PDE T   VLSAC + G V  G++  A   ++  +  
Sbjct: 272 NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA-YILRTEMAY 330

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVI-KNMPMKPNSIVWGALL 524
           N      ++    ++G +  A  ++ ++M    N I + ALL
Sbjct: 331 NSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 124/306 (40%), Gaps = 52/306 (16%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L + +  C S+  L   KQIH + I+  L  + +V N ++T   +  G   +A ++F ++
Sbjct: 434 LAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMY-ARSGSFPWARRMFDQV 492

Query: 76  P-RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
             R     W +MI   ++    +  V ++ +ML++ V PD  T+  +L   +    V  G
Sbjct: 493 CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEG 552

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K  +               + + + + +  E+     + D+                 R 
Sbjct: 553 KRYY---------------DQIKNEHQIAPEMSHYACMVDL---------------LARA 582

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI-L 253
             F E ++    + R  V P ++    +LSAC   K+ ++ + A    K   I PN    
Sbjct: 583 GLFSEAQEF---IRRMPVEPDAIAWGSLLSACRVHKNAELAELAAE--KLLSIDPNNSGA 637

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDV-----ISWTAIVTGYINRGQVDMARQYFDQM 308
            +A+ ++Y+ACG    A  I+   K K V      SWT I +     G  D+        
Sbjct: 638 YSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVH------ 691

Query: 309 PERDYV 314
           P+RD V
Sbjct: 692 PQRDAV 697


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 286/700 (40%), Positives = 392/700 (56%), Gaps = 33/700 (4%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S I +  ++  +K++H    K G +++  V N L+    ++ G +  A  VF  +    V
Sbjct: 242 SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMY-AKCGSIDDARLVFDGMCDRDV 300

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
             WN MI G ++         I+L M +    PD+ T+  LL       A E+ KE+H H
Sbjct: 301 ISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKH 360

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
            ++ G  S + V +A +  Y  CG +D A+ IFD     +V TWNAM  G  + K   E 
Sbjct: 361 AVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREA 420

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             LF +M R+G  P + T V +LSA    + L+  K  H Y  +  +V +L + NAL  M
Sbjct: 421 LSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLV-DLRVGNALVHM 479

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           YA CG   +A                               +Q FD M ER+   WT MI
Sbjct: 480 YAKCGNTMYA-------------------------------KQVFDDMVERNVTTWTVMI 508

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            G  +     EA +LF +M    I PD  T VSIL+ACA+ GALE  + V ++     + 
Sbjct: 509 SGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLV 568

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
           +D+ VGNAL+ MY KCG V+ A+RVF +ML +D ++WT MI GLA +G G  +LD+F +M
Sbjct: 569 SDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKM 628

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
                 P+  ++V VLSAC+H G+VDEGR  F  +T  +GIEP   HY CMVDLLGRAG 
Sbjct: 629 KLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQ 688

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L EA   I NMP++P    WGALLGAC  + + EMAE AAK+ L+L P + + YVLL NI
Sbjct: 689 LEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNI 748

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YAA   W+    +R M+  RGI+K PG S IE++  +H FV GD SHP++KEIY KL ++
Sbjct: 749 YAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDL 808

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
              LK  GY+PD   V  +  +E KE+A+  HSEKLA+ +GL+ +     IR+ KNLR+C
Sbjct: 809 IKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVC 868

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            DCH   K +S V  RE++ RD  RFHHFK G CSC DYW
Sbjct: 869 SDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 175/649 (26%), Positives = 287/649 (44%), Gaps = 83/649 (12%)

Query: 15  QETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKV 71
            E   +S ++ C S   LK   +IH+  I+ G  ++  V+  LV     + G +  A  +
Sbjct: 29  NEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYV-KCGSIDDAQLI 87

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           F K+   +V  W  MI G +     +     +L M +    P++YT+  +L       A+
Sbjct: 88  FDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGAL 147

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           E+ KE+H H +  G    + V NAL+  Y   G +D AR +FD   + D+ +W  M  G 
Sbjct: 148 EWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGL 207

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA--KLKDLDVGKRAHRYVKECKIVP 249
            +  +  E   LF +MER G LP   T + +L+A A      L+  K  H++  +   + 
Sbjct: 208 AQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFIS 267

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           +L + NAL  MYA CG +  A  +F  + ++DVISW A++ G    G    A   F +M 
Sbjct: 268 DLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQ 327

Query: 310 ERDYV-----------------LW----------------------TAMIDGYLRVNRFR 330
           +  +V                  W                      +A +  Y+R     
Sbjct: 328 QEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSID 387

Query: 331 EALTLFREMQTSNIR-------------------------------PDEFTIVSILTACA 359
           +A  +F ++   N+                                PD  T V+IL+A  
Sbjct: 388 DAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANV 447

Query: 360 NLGALELGEWVKTY-IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
              ALE  + V +Y ID   V  D+ VGNAL+ MY KCG+   A++VF +M+ ++  TWT
Sbjct: 448 GEEALEWVKEVHSYAIDAGLV--DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWT 505

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
            MI GLA +G G ++  +F QMLR  I+PD  TYV +LSAC  TG ++  +E  +   + 
Sbjct: 506 VMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSH-AVN 564

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH-RDAEMAE 537
            G+  +      +V +  + G +++A  V  +M ++ +   W  ++G    H R  +  +
Sbjct: 565 AGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQHGRGLDALD 623

Query: 538 MAAKQILE-LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           +  K  LE   P+  +   +L     A    +  R+   +  D GI+ T
Sbjct: 624 LFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPT 672



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 218/443 (49%), Gaps = 35/443 (7%)

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           MI GY+     ++ + +Y  M +   +P+  T+  +LK     +++++GK++H H+++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           F S V V+ AL++ Y  CG +D A+ IFD   + +V++W  M  G     +  E    F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           +M+R+G +P S T V +L+A A    L+  K  H +     +  +L + NAL  MYA  G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            +  A  +F  +  +D+ SWT ++ G    G                             
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHG----------------------------- 211

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACA--NLGALELGEWVKTYIDKNKVKNDI 383
             R +EA +LF +M+     P+  T +SIL A A  + GALE  + V  +  K    +D+
Sbjct: 212 --RGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDL 269

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
            VGNALI MY KCG ++ A+ VF  M  +D  +W AMI GLA NG G ++  +F +M + 
Sbjct: 270 RVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQE 329

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
             +PD  TY+ +L+    TG  +  +E      ++ G+  +       V +  R G +++
Sbjct: 330 GFVPDSTTYLSLLNTHVSTGAWEWVKEVHKH-AVEVGLVSDLRVGSAFVHMYIRCGSIDD 388

Query: 504 ALEVIKNMPMKPNSIVWGALLGA 526
           A  +   + ++ N   W A++G 
Sbjct: 389 AQLIFDKLAVR-NVTTWNAMIGG 410



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 117/218 (53%), Gaps = 2/218 (0%)

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           MI GY       +A+ ++ +M+    +P+E T +SIL AC +  +L+ G+ +  +I ++ 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
            ++D+ V  AL++MY KCG ++ AQ +F +M+ ++  +WT MI GLA  G G ++   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           QM R   IP+  TYV +L+A    G ++  +E  +   +  G+  +      +V +  ++
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSH-AVNAGLALDLRVGNALVHMYAKS 179

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
           G +++A  V   M ++ +   W  ++G    H   + A
Sbjct: 180 GSIDDARVVFDGM-VERDIFSWTVMIGGLAQHGRGQEA 216



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 91/213 (42%), Gaps = 8/213 (3%)

Query: 17  TPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           T  +S +  C S   L   K++HS  +  GL+++  V N LV    ++ G +  A +VF 
Sbjct: 537 TTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHM-YAKCGSVDDARRVFD 595

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
            +    V  W  MI G ++     + + +++ M     +P+ Y+F  +L   +    V+ 
Sbjct: 596 DMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDE 655

Query: 134 GKELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARG-IFDVSYKDDVVTWNAMFSGY 191
           G+     + + +G + ++     ++      G+++ A+  I ++  +     W A+    
Sbjct: 656 GRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGAC 715

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
                 +     F   ER  + P S +  ++LS
Sbjct: 716 VTYGNLEMAE--FAAKERLKLKPKSASTYVLLS 746


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 277/725 (38%), Positives = 411/725 (56%), Gaps = 41/725 (5%)

Query: 4   NSSISPPSTLTQETPLISP--------IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV 55
           +SSIS  + L + T L SP        +  C +   L  +H+ +I  G  +N  V + LV
Sbjct: 92  SSSISLYTHLRRNTNL-SPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSALV 150

Query: 56  TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN 115
              C +   + YA KVF  +P     LWNTMI G  +     + + ++ +M+   VR D+
Sbjct: 151 DLYC-KFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDS 209

Query: 116 YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV 175
            T   +L        ++ G  + C  LK GF    +V   LIS Y  CG+V+ AR +F  
Sbjct: 210 STVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRR 269

Query: 176 SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
             + D++ +NAM SG+      + + KLF E+   G   +S TIV               
Sbjct: 270 INRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIV--------------- 314

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
                      ++P   L +    ++ AC   GF ++  G I N  V   TA    Y   
Sbjct: 315 ----------GLIP---LHSPFGHLHLACSIHGFCVKS-GIILNPTV--STAFTAIYNKL 358

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
            ++D+AR  FD+ PE+  V W AMI GY +      A++LF+EM  +   P+  TI +IL
Sbjct: 359 NEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTIL 418

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
           +ACA LG+L  G+WV   I    ++ +I+V  AL+DMY KCG++ +A ++F  M  K+  
Sbjct: 419 SACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTV 478

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           TW  MI G  ++G+G ++L ++++ML     P  VT++ VL AC+H G+V EG E F +M
Sbjct: 479 TWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNM 538

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535
             ++ IEP   HY CMVD+LGR+G L +ALE IK MP++P   VWG LLGAC +H+D ++
Sbjct: 539 VNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDI 598

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
           A +A++++ ELDP +   YVLL NIY+    +     +RQ++  R + K+PGC++IE+NG
Sbjct: 599 ARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNG 658

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
             H FV+GD+SH    +IY KL+++T  ++ +GY  +      DV EE+KE AV  HSEK
Sbjct: 659 TPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEK 718

Query: 656 LAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715
           LA+AFGLI++ PG  IRI+KNLR+C+DCH   K +S + +R ++VRD  RFHHFK G CS
Sbjct: 719 LAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICS 778

Query: 716 CKDYW 720
           C DYW
Sbjct: 779 CGDYW 783



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 143/553 (25%), Positives = 254/553 (45%), Gaps = 48/553 (8%)

Query: 19  LISPIETCESMHQLKQIHSQTI----KLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRK 74
           L S I    +   L Q H+Q I    +  L T   +  KL  F  +     ++A  +F  
Sbjct: 15  LFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSAT-----RHARALFFS 69

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEF 133
           +P+P + L+N +++G+S  DS  + + +Y  + + +++ PDN+T+ F +   + D  +  
Sbjct: 70  VPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML 129

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
              LH H +  G+ S+VFV +AL+  YC    V  AR +FD   + D V WN M +G  +
Sbjct: 130 ---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVK 186

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
              FD++ +LF EM   GV   S T+  VL A A+L++L VG        +        +
Sbjct: 187 NCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYV 246

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
              L  +Y+ CG++  A  +F  I   D+I++ A+++G+   G  +              
Sbjct: 247 LTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTEC------------- 293

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
                             ++ LFRE+  S  R    TIV ++   +  G L L   +  +
Sbjct: 294 ------------------SVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGF 335

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
             K+ +  +  V  A   +Y K  +++ A+ +F E   K    W AMI G   NG  + +
Sbjct: 336 CVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETA 395

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           + +F +M++    P+ VT   +LSAC   G +  G+ +   +     +EPN      +VD
Sbjct: 396 ISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGK-WVHHLIKSENLEPNIYVSTALVD 454

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           +  + G+++EA ++  +M  K N++ W  ++    +H     A     ++L L  +  AV
Sbjct: 455 MYAKCGNISEAWQLFDSMSEK-NTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAV 513

Query: 554 YVLLCNIYAACNR 566
             L  ++  AC+ 
Sbjct: 514 TFL--SVLYACSH 524



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 146/314 (46%), Gaps = 7/314 (2%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           +FS   +S  ST+    PL SP      +H    IH   +K G++ NPTV     T   +
Sbjct: 302 LFSGERVSS-STIVGLIPLHSPFG---HLHLACSIHGFCVKSGIILNPTVSTAF-TAIYN 356

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           +  ++  A  +F + P  +V  WN MI GY++  S +  + ++ +M+K++  P+  T   
Sbjct: 357 KLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITT 416

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +L    +  ++ FGK +H  +     + +++V  AL+  Y  CG +  A  +FD   + +
Sbjct: 417 ILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKN 476

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-H 239
            VTWN M  GY       E  KL+ EM   G  P++VT + VL AC+    +  G+   H
Sbjct: 477 TVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFH 536

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQV 298
             V + +I P +     + D+    G++  ALE    +        W  ++   +     
Sbjct: 537 NMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDT 596

Query: 299 DMARQYFDQMPERD 312
           D+AR   +++ E D
Sbjct: 597 DIARLASERLFELD 610


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/759 (36%), Positives = 417/759 (54%), Gaps = 71/759 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTF---CCSEKGDMKYACKVFRKIP--RPSVCLWNT-- 85
           + IH++ +K GLL +  + N L+++        G ++ A ++F +IP  R +V  WN+  
Sbjct: 46  RAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLL 105

Query: 86  -----------------------------MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
                                        M+ G +R       +   LDM      P  +
Sbjct: 106 SMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQF 165

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE----------- 165
           T   +L       A   G+++H  V+K G  S V V N++++ Y  CG+           
Sbjct: 166 TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERM 225

Query: 166 --------------------VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
                               +D+A  +F+      +V+WNAM +GY +     +  KLF 
Sbjct: 226 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFS 285

Query: 206 EM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
            M     + P   TI  VLSACA L ++ +GK+ H Y+   ++  N  + NAL   YA  
Sbjct: 286 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 345

Query: 265 GEMGFALEIFGNIKNKD--VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
           G +  A  I       D  VIS+TA++ GY+  G ++ AR+ F  M  RD V WTAMI G
Sbjct: 346 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 405

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           Y +  R  EA+ LFR M T    P+ +T+ ++L+ CA+L  L+ G+ +     ++ ++  
Sbjct: 406 YEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERS 465

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
             V NA+I MY + G    A+R+F ++  RK+  TWT+MIV LA +G G++++ +F +ML
Sbjct: 466 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 525

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
           RA + PD +TYVGVLSAC+H G V+EG+ Y+  +  +H I P  +HY CMVDLL RAG  
Sbjct: 526 RAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLF 585

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
           +EA E I+ MP++P++I WG+LL ACRVH++AE+AE+AA+++L +DP+N   Y  + N+Y
Sbjct: 586 SEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVY 645

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMT 621
           +AC RW +   + +   ++ ++K  G S   +   +H F A D  HPQ   +Y     M 
Sbjct: 646 SACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMW 705

Query: 622 SDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCV 681
            ++K  G++PD+  V  DV +E KE  + +HSEKLA+AFGLIS+    T+R++KNLR+C 
Sbjct: 706 EEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCN 765

Query: 682 DCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           DCH   K +S V DRE+IVRD TRFHHF+ G CSCKDYW
Sbjct: 766 DCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 159/342 (46%), Gaps = 40/342 (11%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA--ACGEMGF--ALEIFGNI 277
           +L  C    +   G+  H    +  ++ +  L N L   Y   A G  G   A  +F  I
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 278 --KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
               ++V +W ++++ +   G++  AR  F +MPERD V WT M+ G  R  RF EA+  
Sbjct: 92  PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
             +M      P +FT+ ++L++CA   A  +G  V +++ K  + + + V N++++MY K
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGK 211

Query: 396 CGDVEKAQRVFREM----------------------LRKDKF---------TWTAMIVGL 424
           CGD E A  VF  M                      L +  F         +W AMI G 
Sbjct: 212 CGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGY 271

Query: 425 AINGHGDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
             NG   K+L +FS+ML  +S+ PDE T   VLSAC + G V  G++  A   ++  +  
Sbjct: 272 NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA-YILRTEMAY 330

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVI-KNMPMKPNSIVWGALL 524
           N      ++    ++G +  A  ++ ++M    N I + ALL
Sbjct: 331 NSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 124/306 (40%), Gaps = 52/306 (16%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L + +  C S+  L   KQIH + I+  L  + +V N ++T   +  G   +A ++F ++
Sbjct: 434 LAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMY-ARSGSFPWARRMFDQV 492

Query: 76  P-RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
             R     W +MI   ++    +  V ++ +ML++ V PD  T+  +L   +    V  G
Sbjct: 493 CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEG 552

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K  +               + + + + +  E+     + D+                 R 
Sbjct: 553 KRYY---------------DQIKNEHQIAPEMSHYACMVDL---------------LARA 582

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI-L 253
             F E ++    + R  V P ++    +LSAC   K+ ++ + A    K   I PN    
Sbjct: 583 GLFSEAQEF---IRRMPVEPDAIAWGSLLSACRVHKNAELAELAAE--KLLSIDPNNSGA 637

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDV-----ISWTAIVTGYINRGQVDMARQYFDQM 308
            +A+ ++Y+ACG    A  I+   K K V      SWT I +     G  D+        
Sbjct: 638 YSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVH------ 691

Query: 309 PERDYV 314
           P+RD V
Sbjct: 692 PQRDAV 697


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 417/738 (56%), Gaps = 44/738 (5%)

Query: 24  ETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA--CKVFRKIPRPSVC 81
            T  S+ Q +Q H+  +K GL  +  +  KL++       +M +A    V   +P P+V 
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDTHLATKLLS---HYANNMCFADATLVLDLVPEPNVF 80

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
            ++T+I  +S+     + +  +  ML   + PDN   P  +K      A++  +++H   
Sbjct: 81  SFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIA 140

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
              GFDS  FVQ++L+  Y  C ++  A  +FD  ++ DVV+W+A+ + Y R    DE +
Sbjct: 141 SVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAK 200

Query: 202 KLFGEMERKGVLPTSV-----------------------------------TIVLVLSAC 226
           +LF EM   GV P  +                                   TI  VL A 
Sbjct: 201 RLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWT 286
             L+DL +G   H YV +  +V +  + +AL DMY  C       ++F  + + DV S  
Sbjct: 261 GDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCN 320

Query: 287 AIVTGYINRGQVD----MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           A + G    GQV+    + RQ  DQ  E + V WT+MI    +  R  EAL LFREMQ +
Sbjct: 321 AFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIA 380

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
            ++P+  TI  +L AC N+ AL  G+    +  +  +  D++VG+ALIDMY KCG ++ +
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQAS 440

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           +  F  +  K+   W A+I G A++G   +++++F  M R+   PD +++  VLSAC+ +
Sbjct: 441 RICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQS 500

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G+ +EG  YF  M+ ++GIE    HY CMV LL RAG L +A  +I+ MP+ P++ VWGA
Sbjct: 501 GLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGA 560

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL +CRVH +  + E+AA+++ EL+P N   Y+LL NIYA+   W+    +R M+ ++G+
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGL 620

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           +K PGCS IE+   VH  +AGDKSHPQ  +I  KLD+++ ++K +GY P+I+ V  DV E
Sbjct: 621 RKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEE 680

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           +DKE+ +  HSEKLA+ FGL+++ PG  ++++KNLR+C DCH + K +S    RE+ VRD
Sbjct: 681 QDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRD 740

Query: 703 KTRFHHFKHGSCSCKDYW 720
             RFHHFK G+CSC DYW
Sbjct: 741 TNRFHHFKEGACSCGDYW 758



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 192/480 (40%), Gaps = 111/480 (23%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFR 73
           L S ++ C  +  LK   Q+H      G  ++  VQ+ LV     C++  D   A +VF 
Sbjct: 117 LPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRD---AHRVFD 173

Query: 74  KIPRPSVCLWNTMIKGYSR---IDSHK------------------NG------------- 99
           ++  P V  W+ ++  Y+R   +D  K                  NG             
Sbjct: 174 RMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSE 233

Query: 100 -VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
            VL++LDM      PD  T   +L        +  G  +H +V+K G  S   V +ALI 
Sbjct: 234 AVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALID 293

Query: 159 TY--CLC-----------------------------GEVDMARGIF----DVSYKDDVVT 183
            Y  C C                             G+V+ +  +F    D   + +VV+
Sbjct: 294 MYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVS 353

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           W +M +   +  +  E  +LF EM+  GV P SVTI  +L AC  +  L  GK AH +  
Sbjct: 354 WTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSL 413

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
              I  ++ + +AL DMYA CG +  +   F  I  K+++ W A++ GY   G+      
Sbjct: 414 RRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKA----- 468

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
                                     +EA+ +F  MQ S  +PD  +   +L+AC+  G 
Sbjct: 469 --------------------------KEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGL 502

Query: 364 LELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            E G  +  +   K  ++  +     ++ +  + G +E+A  + R M +  D   W A++
Sbjct: 503 TEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALL 562


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 258/713 (36%), Positives = 417/713 (58%), Gaps = 8/713 (1%)

Query: 14  TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           T     +S +  C S+ Q ++IH++    GL +  ++ N LVT   +  G +  A ++F+
Sbjct: 108 TDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMY-ARFGSVGDAKRMFQ 166

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
            +       WN +I  +S+       + I+ +M K DV+P++ T+  ++ GF+    +  
Sbjct: 167 SLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPE 225

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+++H  ++  GFD+ + V  ALI+ Y  CG    AR +FD   K D+V+WN M   Y  
Sbjct: 226 GRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVL 285

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
              F E  +L+ +++ +G   T  T V +L AC+ +K L  G+  H ++ E  +   + +
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAV 345

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG---QVDMARQYFDQMPE 310
             AL +MYA CG +  A ++F  +KN+D ++W+ ++  Y + G       AR+ FD++  
Sbjct: 346 ATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGS 405

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELGEW 369
           RD + W AMI  Y++      A+ +FREM   + ++PD  T +++L ACA+LG L   + 
Sbjct: 406 RDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKA 465

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           +   I ++++++++ V N LI+MY +CG +E+A+R+F     K   +WTAM+   +  G 
Sbjct: 466 LHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGR 525

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
             ++LD+F +M    + PD+VTY  +L  CTH G +++G  YF DM   H + P   H+ 
Sbjct: 526 YAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFA 585

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
            MVDLLGR+G L +A E++++MP +P+ + W   L ACR+H   E+ E AA+++ ELDP 
Sbjct: 586 AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPS 645

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           + A Y+ + NIYAA   W+    +R+ + +RG+KK PG S IE++G +HEF +G K HP+
Sbjct: 646 STAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPR 705

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS-GPG 668
           T EI  +L  +   ++  GY+PD   V  DV E +KE  +  HSEK+A+AFGL+SS G G
Sbjct: 706 TDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSG 765

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH-GSCSCKDYW 720
             IR+VKNLR+C DCH   K ++ +  R++IVRD  RFH F   G CSC DYW
Sbjct: 766 EPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 196/419 (46%), Gaps = 39/419 (9%)

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
           D +PDN TF  +L   +    V  G+ LH  +    F+    V NALIS Y  C  +  A
Sbjct: 2   DRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDA 61

Query: 170 RGIFDVS--YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
           R +F+     + +VV+WNAM + Y +     E   L+  M  +G+    VT V VL AC+
Sbjct: 62  RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121

Query: 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
            L     G+  H  V    +     L NAL  MYA  G +G A  +F +++ +D  SW A
Sbjct: 122 SLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNA 178

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           ++  +   G                   W+              AL +F+EM+  +++P+
Sbjct: 179 VILAHSQSGD------------------WSG-------------ALRIFKEMKC-DVKPN 206

Query: 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407
             T +++++  +    L  G  +   I  N    D+ V  ALI+MY KCG   +A+ VF 
Sbjct: 207 STTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFD 266

Query: 408 EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
           +M ++D  +W  MI    +NG   ++L+++ ++        + T+V +L AC+    + +
Sbjct: 267 KMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQ 326

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           GR   + + ++ G++   A    +V++  + G L EA +V   M  + +++ W  L+GA
Sbjct: 327 GRLVHSHI-LERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR-DAVAWSTLIGA 383



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 173/372 (46%), Gaps = 40/372 (10%)

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P +VT + VL +C+   D+  G+  H  ++  +   + ++ NAL  MY  C  +      
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSL------ 58

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP--ERDYVLWTAMIDGYLRVNRFRE 331
                                   VD AR  F+ M   +R+ V W AMI  Y +     E
Sbjct: 59  ------------------------VD-ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTE 93

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL L+  M    +  D  T VS+L AC++L     G  +   +  + + +   + NAL+ 
Sbjct: 94  ALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQSLANALVT 150

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY + G V  A+R+F+ +  +D+ +W A+I+  + +G    +L +F +M +  + P+  T
Sbjct: 151 MYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDVKPNSTT 209

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           Y+ V+S  +   ++ EGR+  A++ + +G + +      ++++ G+ G  +EA EV   M
Sbjct: 210 YINVISGFSTPEVLPEGRKIHAEI-VANGFDTDLVVATALINMYGKCGSSHEAREVFDKM 268

Query: 512 PMKPNSIVWGALLGACRVHRD-AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
             K + + W  ++G   ++ D  E  E+  K  +E     +A +V +    ++       
Sbjct: 269 K-KRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG 327

Query: 571 RELRQMILDRGI 582
           R +   IL+RG+
Sbjct: 328 RLVHSHILERGL 339


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/696 (37%), Positives = 395/696 (56%), Gaps = 35/696 (5%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           ++ G +  A  VF ++P      W  M+ G +R       +   LDM      P  +T  
Sbjct: 3   AKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLT 62

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE-------------- 165
            +L       A   G+++H  V+K G  S V V N++++ Y  CG+              
Sbjct: 63  NVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVR 122

Query: 166 -----------------VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM- 207
                            +D+A  +F+      +V+WNAM +GY +     +  KLF  M 
Sbjct: 123 SVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRML 182

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
               + P   TI  VLSACA L ++ +GK+ H Y+   ++  N  + NAL   YA  G +
Sbjct: 183 HESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSV 242

Query: 268 GFALEIFGNIKNKD--VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
             A  I       D  VIS+TA++ GY+  G ++ AR+ F  M  RD V WTAMI GY +
Sbjct: 243 ENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQ 302

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
             R  EA+ LFR M T    P+ +T+ ++L+ CA+L  L+ G+ +     ++ ++    V
Sbjct: 303 NGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSV 362

Query: 386 GNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
            NA+I MY + G    A+R+F ++  RK+  TWT+MIV LA +G G++++ +F +MLRA 
Sbjct: 363 SNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAG 422

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           + PD +TYVGVLSAC+H G V+EG+ Y+  +  +H I P  +HY CMVDLL RAG  +EA
Sbjct: 423 VEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEA 482

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
            E I+ MP++P++I WG+LL ACRVH++AE+AE+AA+++L +DP+N   Y  + N+Y+AC
Sbjct: 483 QEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSAC 542

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
            RW +   + +   ++ ++K  G S   +   +H F A D  HPQ   +Y     M  ++
Sbjct: 543 GRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEI 602

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           K  G++PD+  V  DV +E KE  + +HSEKLA+AFGLIS+    T+R++KNLR+C DCH
Sbjct: 603 KGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCH 662

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              K +S V DRE+IVRD TRFHHF+ G CSCKDYW
Sbjct: 663 AAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 128/266 (48%), Gaps = 34/266 (12%)

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           +   G++  AR  F +MPERD V WT M+ G  R  RF EA+    +M      P +FT+
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-- 409
            ++L++CA   A  +G  V +++ K  + + + V N++++MY KCGD E A  VF  M  
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 410 --------------------LRKDKF---------TWTAMIVGLAINGHGDKSLDMFSQM 440
                               L +  F         +W AMI G   NG   K+L +FS+M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 441 L-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           L  +S+ PDE T   VLSAC + G V  G++  A   ++  +  N      ++    ++G
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQVHA-YILRTEMAYNSQVTNALISTYAKSG 240

Query: 500 HLNEALEVI-KNMPMKPNSIVWGALL 524
            +  A  ++ ++M    N I + ALL
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALL 266



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (4%)

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           M+ K G +  A+ VF EM  +D  +WT M+VGL   G   +++     M      P + T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
              VLS+C  T     GR+  +   ++ G+         ++++ G+ G    A  V + M
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHS-FVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEM-AAKQILELDPDNEAV 553
           P++  S  W A+     V  +  +  M  A+ + E  PD   V
Sbjct: 120 PVRSVS-SWNAM-----VSLNTHLGRMDLAESLFESMPDRSIV 156



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 124/306 (40%), Gaps = 52/306 (16%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L + +  C S+  L   KQIH + I+  L  + +V N ++T   +  G   +A ++F ++
Sbjct: 328 LAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMY-ARSGSFPWARRMFDQV 386

Query: 76  P-RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
             R     W +MI   ++    +  V ++ +ML++ V PD  T+  +L   +    V  G
Sbjct: 387 CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEG 446

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K  +               + + + + +  E+     + D+                 R 
Sbjct: 447 KRYY---------------DQIKNEHQIAPEMSHYACMVDL---------------LARA 476

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI-L 253
             F E ++    + R  V P ++    +LSAC   K+ ++ + A    K   I PN    
Sbjct: 477 GLFSEAQEF---IRRMPVEPDAIAWGSLLSACRVHKNAELAELAAE--KLLSIDPNNSGA 531

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDV-----ISWTAIVTGYINRGQVDMARQYFDQM 308
            +A+ ++Y+ACG    A  I+   K K V      SWT I +     G  D+        
Sbjct: 532 YSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVH------ 585

Query: 309 PERDYV 314
           P+RD V
Sbjct: 586 PQRDAV 591


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/714 (38%), Positives = 406/714 (56%), Gaps = 39/714 (5%)

Query: 10  PSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           PS +T     +S ++ C S   L   K++H+Q +  G +++  +   LV+    + G M 
Sbjct: 156 PSIIT----FLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYV-KGGSMD 210

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
            A +VF  +    V  +N M+ GY++    +    ++  M +  ++P+  +F  +L G  
Sbjct: 211 DARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCW 270

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
              A+ +GK +H   +  G    + V  +LI  Y  CG ++ AR +FD     DVV+W  
Sbjct: 271 TPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTV 330

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M  GY      ++   LF  M+ +G+ P  +T + +++ACA   +L+  +  H  V    
Sbjct: 331 MIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAG 390

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              +L++  AL  MYA CG +            KD                   ARQ FD
Sbjct: 391 FGTDLLVSTALVHMYAKCGAI------------KD-------------------ARQVFD 419

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
            MP RD V W+AMI  Y+      EA   F  M+ SNI PD  T +++L AC +LGAL++
Sbjct: 420 AMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDV 479

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G  + T   K  + + + +GNALI M  K G VE+A+ +F  M+R+D  TW AMI G ++
Sbjct: 480 GMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSL 539

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G+  ++L +F +ML+    P+ VT+VGVLSAC+  G VDEGR +F  +    GI P   
Sbjct: 540 HGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVK 599

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
            YGCMVDLLGRAG L+EA  +IK+MP+KP S +W +LL ACR+H + ++AE AA++ L +
Sbjct: 600 LYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMI 659

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           DP + AVYV L ++YAA   W+N  ++R+++  RGI+K  GC+ IE+ G VH FV  D+S
Sbjct: 660 DPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRS 719

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           HP   EIY +L  + + +K  GY+P    V  DVGE+ KE A+  HSEKLA+A+G++S  
Sbjct: 720 HPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLP 779

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            G  IRI KNLR+C DCH  +K +S V  RE+I RD +RFHHFK G CSC DYW
Sbjct: 780 SGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 212/453 (46%), Gaps = 40/453 (8%)

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           ++P PS    +T  +   R+ +  N VL  L    + +    Y   F      RD A+  
Sbjct: 23  QLPVPSARFRSTFTR---RVGA--NDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAAL-- 75

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK++  H+++ G   +++  N LI  Y +CG V  AR IFD      VVTWNA+ +GY +
Sbjct: 76  GKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQ 135

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
           V    E   LF +M  +G+ P+ +T + VL AC+    L+ GK  H  V     V +  +
Sbjct: 136 VGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRI 195

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             AL  MY   G M  A ++F  +  +DV ++  +V GY   G                 
Sbjct: 196 GTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGD---------------- 239

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
                          + +A  LF  MQ   ++P++ + +SIL  C    AL  G+ V   
Sbjct: 240 ---------------WEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQ 284

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
                + +DI V  +LI MY  CG +E A+RVF  M  +D  +WT MI G A NG+ + +
Sbjct: 285 CMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDA 344

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
             +F+ M    I PD +TY+ +++AC  +  ++  RE  + + I  G   +      +V 
Sbjct: 345 FGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIA-GFGTDLLVSTALVH 403

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           +  + G + +A +V   MP + + + W A++GA
Sbjct: 404 MYAKCGAIKDARQVFDAMPRR-DVVSWSAMIGA 435


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 278/759 (36%), Positives = 414/759 (54%), Gaps = 71/759 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCS---EKG----------DMKYACK--------- 70
           + IH+  +K GLL +  + N L+ +  S    +G          D+ YA +         
Sbjct: 229 RAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSLL 288

Query: 71  --------------VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
                         VF ++P      W  MI G +R     + V  +LDM+     P  +
Sbjct: 289 SLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQF 348

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           T   +L       A   G+++H  V+K G  S V V N+++  Y  CG+ + AR +F+  
Sbjct: 349 TLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERM 408

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL----------------------- 213
               V +WN M S Y    + +    +F  M  + ++                       
Sbjct: 409 QVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFS 468

Query: 214 ---------PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
                    P + T+  VLSACA L+ L +GK+ H Y+    +  +  + NAL   YA  
Sbjct: 469 RMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKS 528

Query: 265 GEMGFALEIFGN--IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
           G +  A  I     + + +VIS+TA++ GY+  G    AR+ FD M  RD + WTAMI G
Sbjct: 529 GSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVG 588

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           Y +  +  EA+ LFR M      P+  T+ ++L+ACA+L  L+ G+ +     ++  +  
Sbjct: 589 YHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQS 648

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
           + V NA+I +Y + G V  A+RVF ++  RK+  TWT+MIV +A +G G++++ +F +M+
Sbjct: 649 VSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMV 708

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
           R  + PD +TYVGVLSAC H G VD+G+ Y+  M  +HGI P  +HY CMVDL  RAG L
Sbjct: 709 RVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLL 768

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
            EA E I+ MP+ P+++VWG+LL ACRV ++A++AE+AA ++L +DP N   Y  L N+Y
Sbjct: 769 TEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVY 828

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMT 621
           +AC RW++   + ++  D+G+KK  G S   + G VH F A D  HPQ   IY K  EM 
Sbjct: 829 SACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMW 888

Query: 622 SDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCV 681
            ++K  G++PD++ V  DV +E KE  + +HSEKLA+AFGLIS+    T+RI+KNLR+C 
Sbjct: 889 EEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCN 948

Query: 682 DCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           DCH   K +S   DRE+IVRD TRFHHF+ G CSCKDYW
Sbjct: 949 DCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 142/576 (24%), Positives = 227/576 (39%), Gaps = 158/576 (27%)

Query: 10  PSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           PS  T    L + + +C +M      +++H   +KLGL +   V N  V +   + GD +
Sbjct: 345 PSQFT----LTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANS-VLYMYGKCGDAE 399

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK------------------ 108
            A  VF ++   SV  WN M+  Y+     +  V ++ +M++                  
Sbjct: 400 TARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGL 459

Query: 109 --------------SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
                         S + PD +T   +L        ++ GK++H ++L+ G   S  + N
Sbjct: 460 DGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMN 519

Query: 155 ALISTYCLCGEVD---------------------------------MARGIFDVSYKDDV 181
           ALISTY   G V+                                  AR IFD+    DV
Sbjct: 520 ALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDV 579

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           + W AM  GY +  Q DE  +LF  M   G  P S T+  VLSACA L  LD GK+ H  
Sbjct: 580 IAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIH-- 637

Query: 242 VKECKIVPNL-----ILENALTDMYAACGEMGFALEIFGNI-KNKDVISWTAIVTGYINR 295
              CK + +L      + NA+  +YA  G +  A  +F  I   K+ I+WT+++      
Sbjct: 638 ---CKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQH 694

Query: 296 GQ-----------------------------------VDMARQYFDQMPERDYVL----- 315
           G                                    VD  ++Y++QM     ++     
Sbjct: 695 GLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSH 754

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC-----ANLGALELGEWV 370
           +  M+D + R     EA    + M    + PD     S+L AC     A+L  L  G+ +
Sbjct: 755 YACMVDLHARAGLLTEAHEFIQRMP---VAPDTVVWGSLLAACRVRKNADLAELAAGKLL 811

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK-------FTWTAMIVG 423
              ID +         +AL ++Y  CG    A R+++  LRKDK       F+WT +   
Sbjct: 812 S--IDPHNSG----AYSALANVYSACGRWNDAARIWK--LRKDKGVKKETGFSWTHVRGK 863

Query: 424 LAINGHGD-----------KSLDMFSQMLRASIIPD 448
           + + G  D           K+ +M+ ++ +A  +PD
Sbjct: 864 VHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPD 899



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 134/287 (46%), Gaps = 38/287 (13%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG-EMGFALE---IFGNI 277
           +L  C    +   G+  H +  +  ++ +  L N L   YA+ G   G   E   +F +I
Sbjct: 215 LLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDI 274

Query: 278 --KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
               ++  +W ++++ Y   G++  A   F +MP+RD V WT MI G  R  RF +A+  
Sbjct: 275 PYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKT 334

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
           F +M +    P +FT+ ++L++CA + A  +G  V  ++ K  + + + V N+++ MY K
Sbjct: 335 FLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGK 394

Query: 396 CGDVEKAQRVFRE-------------------------------MLRKDKFTWTAMIVGL 424
           CGD E A+ VF                                 M+ +   +W  +I G 
Sbjct: 395 CGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGY 454

Query: 425 AINGHGDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDEGRE 470
             NG    +L  FS+ML AS + PD  T   VLSAC +  M+  G++
Sbjct: 455 NQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQ 501


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/567 (43%), Positives = 354/567 (62%), Gaps = 4/567 (0%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           + L  +Y   G +D +  +F  +    V  W A+  G+      ++    + +M  +GV 
Sbjct: 13  DKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVE 72

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P + T   +L  C     ++ GK  H    +     +L +   L D+YA  G++  A ++
Sbjct: 73  PNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQL 128

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  K ++S TA++T Y   G++D AR  FD M ERD V W  MIDGY +     EAL
Sbjct: 129 FDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEAL 188

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LFR M  +  +P+E T++S+L+AC  LGALE G WV +YI+ N ++ ++ VG AL+DMY
Sbjct: 189 VLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMY 248

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KCG +E A+ VF ++  KD   W +MIVG A+ G   ++L +F  M R  + P  +T++
Sbjct: 249 SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFI 308

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
           G+LSAC H+G V EG + F  M  ++GIEP   HYGCMV+LLGRAGH+ +A E++KNM +
Sbjct: 309 GILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNI 368

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           +P+ ++WG LLGACR+H    + E   + +++ +  N   Y+LL NIYAA   WD    L
Sbjct: 369 EPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARL 428

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R M+ D G+KK PGCS IE+N  VHEF+AG  +HP+ KEIY+ L+E+   LK  GY P  
Sbjct: 429 RTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQT 488

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
             V  D+GE +KER++  HSEKLA+AFGLI++ PG TI+IVKNLR+C DCH + KL+S +
Sbjct: 489 DIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKI 548

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
             R+++VRD+ RFHHF +GSCSC DYW
Sbjct: 549 TGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 176/405 (43%), Gaps = 80/405 (19%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G + Y+  +F +   PSV  W  +I G++    H+  +  Y  ML   V P+ +TF  +L
Sbjct: 23  GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL 82

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY---------------------- 160
           K       +E GK LH   +K GFDS ++V+  L+  Y                      
Sbjct: 83  K----LCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 138

Query: 161 -------CLC--GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
                  C    GE+D AR +FD   + D V WN M  GY +    +E   LF  M +  
Sbjct: 139 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 198

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
             P  VT++ VLSAC +L  L+ G+  H Y++   I  N+ +  AL DMY+ CG +  A 
Sbjct: 199 AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDAR 258

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            +F  I +KDV++W +++ GY   G        F Q                       E
Sbjct: 259 LVFDKIDDKDVVAWNSMIVGYAMXG--------FSQ-----------------------E 287

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFVG---- 386
           AL LF+ M    + P   T + IL+AC + G      WV    D  NK+K++  +     
Sbjct: 288 ALQLFKSMCRMGLHPTNITFIGILSACGHSG------WVTEGWDIFNKMKDEYGIEPKIE 341

Query: 387 --NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
               ++++  + G VE+A  + + M +  D   W  ++    ++G
Sbjct: 342 HYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHG 386



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 152/374 (40%), Gaps = 87/374 (23%)

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           E K  P  +  + L   YA+ G + +++ +FG  +N  V  WTAI+ G+  RG       
Sbjct: 2   EDKKPPAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG------- 54

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
                                      +AL  + +M T  + P+ FT  SIL  C     
Sbjct: 55  ------------------------LHEQALNFYAQMLTQGVEPNAFTFSSILKLC----P 86

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK----------- 412
           +E G+ + +   K    +D++V   L+D+Y + GDV  AQ++F  M  K           
Sbjct: 87  IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTC 146

Query: 413 --------------------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
                               D   W  MI G   NG  +++L +F +ML+A   P+EVT 
Sbjct: 147 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 206

Query: 453 VGVLSACTHTGMVDEGR---EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
           + VLSAC   G ++ GR    Y  +  IQ  +    A    +VD+  + G L +A  V  
Sbjct: 207 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTA----LVDMYSKCGSLEDARLVFD 262

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI--LELDPDNEAVYVLLCNIYAACNR- 566
            +  K + + W +++    +   ++ A    K +  + L P N    +    I +AC   
Sbjct: 263 KIDDK-DVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTN----ITFIGILSACGHS 317

Query: 567 ------WDNFRELR 574
                 WD F +++
Sbjct: 318 GWVTEGWDIFNKMK 331



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 147/338 (43%), Gaps = 43/338 (12%)

Query: 10  PSTLTQETPL-ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           P+  T  + L + PIE        K +HSQ +KLG  ++  V+  L+    +  GD+  A
Sbjct: 73  PNAFTFSSILKLCPIEPG------KALHSQAVKLGFDSDLYVRTGLLD-VYARGGDVVSA 125

Query: 69  CKVFRKIP--------------------------------RPSVCLWNTMIKGYSRIDSH 96
            ++F  +P                                R  VC WN MI GY++    
Sbjct: 126 QQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC-WNVMIDGYTQNGMP 184

Query: 97  KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
              ++++  MLK+  +P+  T   +L    +  A+E G+ +H ++   G   +V V  AL
Sbjct: 185 NEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTAL 244

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           +  Y  CG ++ AR +FD     DVV WN+M  GY       E  +LF  M R G+ PT+
Sbjct: 245 VDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTN 304

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           +T + +LSAC     +  G      +K E  I P +     + ++    G +  A E+  
Sbjct: 305 ITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVK 364

Query: 276 NIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           N+    D + W  ++      G++ +  +  + + +++
Sbjct: 365 NMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 402


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 278/756 (36%), Positives = 416/756 (55%), Gaps = 76/756 (10%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
            L+Q+H+Q I   L  +      L+  C   +    Y   +F     P+V ++ +M++ Y
Sbjct: 16  HLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFY 75

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           S +  H   VL++  M    VRPD + +P L+K      A   G   H HVLK G  S  
Sbjct: 76  SHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKS-----AGNGGIGFHAHVLKLGHGSDA 130

Query: 151 FVQNALISTYCLCGEVDMARGI---------------------------------FDVSY 177
           FV+NA+I  Y   G +  AR +                                 FDV  
Sbjct: 131 FVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP 190

Query: 178 KDDVVTWNAMFSGYKRVKQFDETR-------------------------------KLFGE 206
           + +V+TW AM +GY +VK  +  R                               +LF E
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDE 250

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M   G+ P   T V V+SAC+   D  +     R + + +I  N  +  AL DMYA CG 
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGS 310

Query: 267 MGFALEIFGNIKN-KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
           +G A  IF  +   ++ ++W A+++ Y   G +D AR+ F+ MP R+ V W +MI GY +
Sbjct: 311 IGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQ 370

Query: 326 VNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
             +   A+ LF+EM T+  + PDE T+VS+++AC +LGALELG WV  ++ +N++K  I 
Sbjct: 371 NGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSIS 430

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
             NA+I MY +CG +E A+RVF+EM  +D  ++  +I G A +GHG +++++ S M    
Sbjct: 431 GHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGG 490

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           I PD VT++GVL+AC+H G+++EGR+ F  +      +P   HY CMVDLLGR G L +A
Sbjct: 491 IEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDA 545

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
              ++ MPM+P++ V+G+LL A R+H+  E+ E+AA ++ EL+PDN   ++LL NIYA+ 
Sbjct: 546 KRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASA 605

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
            RW +   +R+ +   G+KKT G S +E  G +H+F+  D+SH ++ +IY  L E+   +
Sbjct: 606 GRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKM 665

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           +  GY+ D S V  DV EE+KE  V  HSEKLA+ + L+ S  G  IR+VKNLR+C DCH
Sbjct: 666 REAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCH 725

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              K++S +  R +IVRD  RFH F  G CSCKDYW
Sbjct: 726 TAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 266/619 (42%), Positives = 381/619 (61%), Gaps = 18/619 (2%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS--VFVQNALISTYCLCGEVDMARGIFDV 175
           + FLL+   R+ +++ G+ LH  ++  G   +   F+ NAL+  Y  CG    AR +FD 
Sbjct: 16  YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75

Query: 176 ---SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
              S+KD  V W  +   + R    DE   +F EM R GV P  VT+V +   CA+L D+
Sbjct: 76  IPHSHKD-TVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDV 134

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
            VG + H  + +  +       NA+ DMYA  G MG A  +F  +K + V+SWT I+ G 
Sbjct: 135 VVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGV 194

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTI 351
           I    V   R  FD+MPER+ V WT MI GYL     +E+  L REM     +  +  T+
Sbjct: 195 IRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTL 254

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKN-DIFVGNALIDMYCKCGDVEKAQRVFREML 410
            SILTAC+  G L +G WV  Y  K K K  +I VG A++DMY KCG +  A + F++M 
Sbjct: 255 CSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMP 314

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
           +++  +W AM+ GLA++G G  +LD+F QM + +  PD+VT+  VLSAC+H+G+VD+G  
Sbjct: 315 QRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEAK-PDDVTFTSVLSACSHSGLVDQGCF 373

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           YF ++   +GI P   HY CMVDLLGRAG L EA  +++ MP++PN +V G+LLG+C +H
Sbjct: 374 YFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIH 433

Query: 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590
              ++ E   +++++LDP N   ++LL N+YA   + +    LRQ++  RGIKK PG S 
Sbjct: 434 GKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSS 493

Query: 591 IEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS-EVFLD--------VG 641
           I + G VH+F AGDKSHP+T+E+Y  LDEM   L+  GY P+ + + F          V 
Sbjct: 494 IHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVE 553

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
           +E+KE+A++ HSEKLA+ FGLIS+GPGV + I KNLR+C DCH   K+VS +Y+RE+++R
Sbjct: 554 QEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIR 613

Query: 702 DKTRFHHFKHGSCSCKDYW 720
           D+ RFH FK GSCSC DYW
Sbjct: 614 DRNRFHCFKEGSCSCCDYW 632



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 121/486 (24%), Positives = 195/486 (40%), Gaps = 94/486 (19%)

Query: 33  KQIHSQTIKLGLLTNPT--VQNKLVTFCCSEKGDMKYACKVFRKIPRP--SVCLWNTMIK 88
           +++H+  I  G+   P   + N L+ F  S  G    A KVF +IP        W T++ 
Sbjct: 33  ERLHATIITTGIAGAPETFLHNALLQFYAS-CGCAWQARKVFDEIPHSHKDTVDWTTLMG 91

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
            + R +     +LI+++M +  V+PD  T   L  G  R   V  G + H  ++K G   
Sbjct: 92  CFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGG 151

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM- 207
                NA++  Y   G +  AR +F       VV+W  +  G  R +     R +F EM 
Sbjct: 152 VEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMP 211

Query: 208 ERKGVLPT-------------------------------SVTIVLVLSACAKLKDLDVGK 236
           ER  V  T                                VT+  +L+AC++  DL +G+
Sbjct: 212 ERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGR 271

Query: 237 RAHRYVKECKIVP-NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY--- 292
             H Y  + K    N+++  A+ DMYA CG +  A + F  +  ++V+SW A+++G    
Sbjct: 272 WVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMH 331

Query: 293 -INRGQVDMARQYFDQMPERDYVL-----------------------------------W 316
            + R  +D+  Q F +    D                                      +
Sbjct: 332 GLGRAALDIFPQMFKEAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHY 391

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV---KTY 373
             M+D   R  R  EA  L REM    IRP+E  + S+L +C+  G L+LGE +      
Sbjct: 392 ACMVDLLGRAGRLEEAEILVREMP---IRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQ 448

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH---- 429
           +D    +  I + N    MY   G   +A  + R++L+K        +  + + G     
Sbjct: 449 LDPQNTEYHILLSN----MYALAGKQNRANSL-RQVLKKRGIKKVPGMSSIHVGGQVHQF 503

Query: 430 --GDKS 433
             GDKS
Sbjct: 504 SAGDKS 509


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/765 (35%), Positives = 425/765 (55%), Gaps = 76/765 (9%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S+  L Q H+Q +  G   + ++  KL T   S+ G + YA  +F  + RP V L+N ++
Sbjct: 32  SISHLAQTHAQIVLHGFRNDISLLTKL-TQRLSDLGAIYYARDIFLSVQRPDVFLFNVLM 90

Query: 88  KGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLK---GFTRDIAVEFGKELHCHVLK 143
           +G+S  +S  + + ++  + KS D++P++ T+ F +    GF  D A   G  +H   + 
Sbjct: 91  RGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA---GCVIHGQAIV 147

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
            G DS + + + ++  Y     V+ AR +FD   + D + WN M SGY++ + + E+ ++
Sbjct: 148 DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQV 207

Query: 204 FGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKRAHR--------------------YV 242
           F ++  +       T +L +L A A+L++L +G + H                     Y 
Sbjct: 208 FRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYS 267

Query: 243 KECKIV-----------PNLILENALTDMYAACGEMGFALEIF-------GNIKNKDVIS 284
           K  KI            P+++  NA+   Y + GE   +L +F         +K+  ++S
Sbjct: 268 KCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVS 327

Query: 285 W-----------------------------TAIVTGYINRGQVDMARQYFDQMPERDYVL 315
                                         TA+ T Y    +++ AR+ FD+ PE+    
Sbjct: 328 LVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPS 387

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           W AMI GY +     +A++LFREMQ S   P+  TI  IL+ACA LGAL LG+WV   + 
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
               ++ I+V  ALI MY KCG + +A+R+F  M +K++ TW  MI G  ++GHG ++L 
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALT 507

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +FS+ML + I P  VT++ VL AC+H G+V EG E F  M  ++G EP+  HY C+VD+L
Sbjct: 508 IFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDIL 567

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
           GRAGHL  AL+ I+ MP++P   VW  LLGACR+H+D  +A   ++++ ELDPDN   +V
Sbjct: 568 GRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHV 627

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
           LL NI++A   +     +RQ    R + K PG ++IE+    H F +GD+SHPQ K I+ 
Sbjct: 628 LLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHE 687

Query: 616 KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
           KL+++   ++  GY P+      DV EE++E  V  HSE+LA+AFGLI++ PG  IRI+K
Sbjct: 688 KLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIK 747

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C+DCH   KL+S + +R ++VRD  RFHHFK G CSC DYW
Sbjct: 748 NLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 201/456 (44%), Gaps = 42/456 (9%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           I+   T    T L+  +     + +L+   QIHS   K G  ++  V    ++   S+ G
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLY-SKCG 270

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            +K A  +FR+  RP +  +N MI GY+     +  + ++ +++ S  +  + T   L+ 
Sbjct: 271 KIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVP 330

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
                + +     +H + LK  F S   V  AL + Y    E++ AR +FD S +  + +
Sbjct: 331 VSGHLMLI---YAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPS 387

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           WNAM SGY +    ++   LF EM+     P  VTI  +LSACA+L  L +GK  H  V+
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
                 ++ +  AL  MYA CG +  A  +F  +  K+ ++W  +++GY   G       
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHG----- 502

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
                                     +EALT+F EM  S I P   T + +L AC++ G 
Sbjct: 503 --------------------------QEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGL 536

Query: 364 LELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
           ++ G E   + I +   +  +     ++D+  + G +++A +    M ++     W  ++
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLL 596

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
               I  H D +L          + PD V Y  +LS
Sbjct: 597 GACRI--HKDTNLARTVSEKLFELDPDNVGYHVLLS 630


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/697 (37%), Positives = 414/697 (59%), Gaps = 37/697 (5%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           +++G ++ A +VF  IP      W T+I GY+++   ++ + I++DM+K  V P  +T  
Sbjct: 52  AKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLT 111

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL----------------- 162
            +L       +   GK++H  V+K G  + V V N+L++ Y                   
Sbjct: 112 NVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR 171

Query: 163 --------------CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
                         CG VD+A   F++  + D+V+WN+M +G  +    +E  + F  + 
Sbjct: 172 NTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSIL 231

Query: 209 RKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           +   L P   ++   LSACA L+ L  GK+ H Y+       +  + NAL  MYA  G +
Sbjct: 232 KDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGV 291

Query: 268 GFALEIF--GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
             A  I     I + DVI++TA++ GY+  G +  ARQ F+ + + D V WTAMI GY++
Sbjct: 292 EIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQ 351

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
                +A+ +F+ M +   RP+ FT+ ++L+A +++ +L  G+ +     ++       V
Sbjct: 352 NGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSV 411

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
           GNAL  MY K G +  A++VF  +LR  +D  +WT+MI+ LA +G G++++++F QML  
Sbjct: 412 GNALTTMYAKAGSINGARKVF-NLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTL 470

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            I PD +TYVGVLSACTH G+V++GR YF  M   H I+P  +HY CMVDL GRAG L E
Sbjct: 471 GIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQE 530

Query: 504 ALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563
           A + ++NMPM+P+ I WG+LL +C+V+++ ++A++AA+++L ++P+N   Y  L N+Y++
Sbjct: 531 AYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSS 590

Query: 564 CNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSD 623
           C +WD+  ++R+++  RG+KK  G S +++    H F   D  HPQ  EIY  +D++  +
Sbjct: 591 CGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKE 650

Query: 624 LKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDC 683
           +K +G+ PD   V  D+  E K++ +  HSEKLA+AFG+IS+    T+RI+KNLR+C DC
Sbjct: 651 IKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDC 710

Query: 684 HRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           H   K +S + DRE+IVRD TRFHHFK GSCSCKDYW
Sbjct: 711 HNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 223/452 (49%), Gaps = 41/452 (9%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           + F  N ++S Y   G+++ A  +FD+    D V+W  +  GY ++ +F++  K+F +M 
Sbjct: 40  TTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMV 99

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
           +  VLPT  T+  VL++CA      +GK+ H +V +  +   + + N+L +MYA  G++ 
Sbjct: 100 KDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLK 159

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A  +F  +K ++  SW A+++ ++N G+VD+A   F+ + ERD V W +MI G  +   
Sbjct: 160 MAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGF 219

Query: 329 FREALTLFRE-MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
             EAL  F   ++ ++++PD F++ S L+ACANL  L  G+ +  YI +        VGN
Sbjct: 220 DNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGN 279

Query: 388 ALIDMYCKCGDVEKAQR---------------------------------VFREMLRKDK 414
           ALI MY K G VE A+R                                 +F  +   D 
Sbjct: 280 ALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDV 339

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
             WTAMIVG   NG  + ++++F  M+     P+  T   +LSA +    ++ G++  A 
Sbjct: 340 VAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHAS 399

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
             I+ G   + +    +  +  +AG +N A +V   +    +++ W +++ A   H   E
Sbjct: 400 -AIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGE 458

Query: 535 MAEMAAKQILEL--DPDNEAVYVLLCNIYAAC 564
            A    +Q+L L   PD    ++    + +AC
Sbjct: 459 EAIELFEQMLTLGIKPD----HITYVGVLSAC 486



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 130/233 (55%), Gaps = 6/233 (2%)

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           L N L ++YA  G    A ++F  +  K   SW  I++GY  +G+++ A Q FD +P RD
Sbjct: 12  LMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRD 71

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V WT +I GY ++ RF +A+ +F +M    + P +FT+ ++L +CA  G+  +G+ V +
Sbjct: 72  SVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHS 131

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN-GHGD 431
           ++ K  +   + V N+L++MY K GD++ A+ VF  M  ++  +W AMI  L +N G  D
Sbjct: 132 FVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI-SLHMNCGRVD 190

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
            +L  F  +    I    V++  +++ C   G  +E  ++F+ +     ++P+
Sbjct: 191 LALAQFELLSERDI----VSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPD 239



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 35/254 (13%)

Query: 2   FSNSSISPPSTLTQETP---------LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQN 52
            +N +I    T+  E P         ++S   +  S++  KQIH+  I+ G   +P+V N
Sbjct: 354 LNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGN 413

Query: 53  KLVTFCCSEKGDMKYACKVFR--KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD 110
            L T   ++ G +  A KVF   +  R +V  W +MI   ++    +  + ++  ML   
Sbjct: 414 ALTTM-YAKAGSINGARKVFNLLRQNRDTVS-WTSMIMALAQHGLGEEAIELFEQMLTLG 471

Query: 111 VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170
           ++PD+ T+  +L   T    VE G+        F    +V   +  +S Y    ++    
Sbjct: 472 IKPDHITYVGVLSACTHGGLVEQGRSY------FDLMKNVHKIDPTLSHYACMVDLFGRA 525

Query: 171 GIFDVSYK--------DDVVTWNAMFSGYKRVKQFD-----ETRKLFGEMERKGVLPTSV 217
           G+   +YK         DV+ W ++ S  K  K  D       R L  E    G      
Sbjct: 526 GLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYS--- 582

Query: 218 TIVLVLSACAKLKD 231
            +  V S+C K  D
Sbjct: 583 ALANVYSSCGKWDD 596


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/590 (41%), Positives = 367/590 (62%), Gaps = 35/590 (5%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD----DVVTWNAMFSGY 191
           ++H H+LK G  ++  V     S   L    D A      +  D    D   +N +   Y
Sbjct: 47  QIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAY 106

Query: 192 KRVKQF-DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
            +     D+   L+G M    +LP   T   VL ACA L+ L++G+  H  V +     +
Sbjct: 107 AQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCD 166

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           + ++N +  MY+ C                               G ++ AR+ FD+MP+
Sbjct: 167 IHVQNTMVHMYSCCA------------------------------GGINSARKVFDEMPK 196

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
            D V W+AMI GY RV R  EA+ LFREMQ + + PDE T+VS+L+AC +LGALELG+W+
Sbjct: 197 SDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWI 256

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
           + YI+++++   + V NALIDM+ KCGD+ KA ++FR M  K   +WT++IVG+A++G G
Sbjct: 257 EAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRG 316

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
            ++  +F +M  + + PD+V ++G+LSAC+H+G+V+ GREYF  M  ++ + P   HYGC
Sbjct: 317 QEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGC 376

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           MVD+  R G + EALE ++NMP++PN ++   L+ ACR H + ++ E   K +++ +P +
Sbjct: 377 MVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLH 436

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
           E+ YVLL NIYA    W+   ++R+++  +G+KK PG +MIE++  ++EFVAGDKSH Q 
Sbjct: 437 ESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQH 496

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
           KEIY  +DEM  ++K  GY P  SEV LD+ EEDKE ++ +HSEKLA+AFGL+ + PG  
Sbjct: 497 KEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGTP 556

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IRIVKNLR+C DCH  +K +S +YDRE+I+RD+ RFHHFK G CSC D+W
Sbjct: 557 IRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 134/433 (30%), Positives = 215/433 (49%), Gaps = 38/433 (8%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           S P+    E   ++ ++ C ++ +L QIH+  +KLGL  NP V  K  +           
Sbjct: 21  STPNPRAPEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYA 80

Query: 68  ACKVFRKIPRPSV---CLWNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLK 123
           A  +F       +    L+NT+I+ Y++    K+  L +Y  ML   + P+ +T+PF+LK
Sbjct: 81  ASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLK 140

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY-CLCGEVDMARGIFDVSYKDDVV 182
                  +  G+ +H  V+KFGFD  + VQN ++  Y C  G ++ AR +FD   K D V
Sbjct: 141 ACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSV 200

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           TW+AM  GY RV +  E   LF EM+   V P  +T+V +LSAC  L  L++GK    Y+
Sbjct: 201 TWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYI 260

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
           +  +I   + + NAL DM+A CG++  AL++F  +  K ++SWT+++ G    G      
Sbjct: 261 ERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHG------ 314

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                    R +EA  LF EM +S + PD+   + +L+AC++ G
Sbjct: 315 -------------------------RGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSG 349

Query: 363 ALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            +E G E+  + + K K+   I     ++DMYC+ G V++A    R M  +        +
Sbjct: 350 LVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTL 409

Query: 422 VGLAINGHGDKSL 434
           V  A  GHG+  L
Sbjct: 410 VS-ACRGHGEFKL 421


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 258/693 (37%), Positives = 408/693 (58%), Gaps = 6/693 (0%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            +++H   ++  LL +  +    +    S+ G ++ A +VFR +   +   +N ++ GY +
Sbjct: 397  RELHGHLVR-NLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQ 455

Query: 93   IDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
                +  + +Y DM   D ++PD +TF  LL           G+++H H+++     ++ 
Sbjct: 456  EGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNII 515

Query: 152  VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
            V+  L+  Y  CG ++ A+ IF+   + +  +WN+M  GY++  +  E  +LF +M+  G
Sbjct: 516  VETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNG 575

Query: 212  VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
            + P   ++  +LS+C  L D   G+  H ++    +    IL+  L DMYA CG M +A 
Sbjct: 576  IKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAW 635

Query: 272  EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            +++     KDVI    +V+ ++N G+ + A+  FDQM +R+  LW +++ GY      +E
Sbjct: 636  KVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKE 695

Query: 332  ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN-DIFVGNALI 390
            +   F EM  S+I  D  T+V+I+  C++L ALE G+ + + I K    N  + +  AL+
Sbjct: 696  SFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALV 755

Query: 391  DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            DMY KCG + KA+ VF  M  K+  +W AMI G + +G   ++L ++ +M +  + P+EV
Sbjct: 756  DMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEV 815

Query: 451  TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
            T++ +LSAC+HTG+V+EG   F  M   + IE    HY CMVDLLGRAG L +A E ++ 
Sbjct: 816  TFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEK 875

Query: 511  MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
            MP++P    WGALLGACRVH+D +M  +AA+++ ELDP N   YV++ NIYAA  RW   
Sbjct: 876  MPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEV 935

Query: 571  RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
             ++RQM+  +G+KK PG S IE+N  +  F AG K+HP+T+EIY  L  +T   K +GY+
Sbjct: 936  EDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYI 995

Query: 631  PDISEVFL---DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
            PD S +     D+ EE++E  + QHSE+LA++ GLIS     TIR+ KNLR+C DCH   
Sbjct: 996  PDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTAT 1055

Query: 688  KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            K +S +  R +I RD  RFHHF++G CSC DYW
Sbjct: 1056 KFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 168/657 (25%), Positives = 297/657 (45%), Gaps = 80/657 (12%)

Query: 8   SPPSTLTQETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK-- 62
           + P++     P  S I+ C    S  + K IH+Q I  G   +  +  K++         
Sbjct: 63  TKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCL 122

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
            D+ YA K+F ++P  ++  WNTMI  Y+R+D +   + +Y  M  S    D +TFP ++
Sbjct: 123 DDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVI 182

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K       +   ++L   V+K G + ++FV  AL+  Y   G +D A    D      VV
Sbjct: 183 KACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVV 242

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           TWNA+ +GY ++  ++E   +F  M + GV P + T    L  C  L+  D GK+ H  +
Sbjct: 243 TWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKL 302

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
             C    +  + NAL DMYA C +    L++F  +  ++ ++W +I++     G      
Sbjct: 303 IACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGH----- 357

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                     F +AL LF  MQ S  + + F + SIL A A L 
Sbjct: 358 --------------------------FNDALVLFLRMQESGYKSNRFNLGSILMASAGLA 391

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            +  G  +  ++ +N + +DI +G+AL+DMY KCG VE+A +VFR +L +++ ++ A++ 
Sbjct: 392 DIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLA 451

Query: 423 GLAINGHGDKSLDMFSQMLRA-SIIPDEVTYVGVLSACTHTGMVDEGREYFADM---TIQ 478
           G    G  +++L+++  M     I PD+ T+  +L+ C +    ++GR+  A +    I 
Sbjct: 452 GYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANIT 511

Query: 479 HGI---------------------------EPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
             I                           E N   +  M++   + G   EAL + K M
Sbjct: 512 KNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM 571

Query: 512 PM---KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY-VLLCNIYAACNRW 567
            +   KP+     ++L +C    D++        I+    + E +  V+L ++YA C   
Sbjct: 572 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSM 631

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
           D        + D+ IKK     +I  N +V  FV   +++   K ++ ++++  + L
Sbjct: 632 D----YAWKVYDQTIKK----DVILNNVMVSAFVNSGRAN-DAKNLFDQMEQRNTAL 679



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 158/338 (46%), Gaps = 17/338 (5%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+     C SM    +++ QTIK  ++ N  + +  V       G    A  +F ++ + 
Sbjct: 621 LVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVN-----SGRANDAKNLFDQMEQR 675

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           +  LWN+++ GY+     K     +L+ML+SD+  D  T   ++   +   A+E G +LH
Sbjct: 676 NTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLH 735

Query: 139 CHVLKFGF-DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
             ++K GF + SV ++ AL+  Y  CG +  AR +FD     ++V+WNAM SGY +    
Sbjct: 736 SLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCS 795

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLILENA 256
            E   L+ EM +KG+ P  VT + +LSAC+    ++ G R    ++E   I         
Sbjct: 796 KEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTC 855

Query: 257 LTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD--- 312
           + D+    G +  A E    +    +V +W A++        +DM R    ++ E D   
Sbjct: 856 MVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQN 915

Query: 313 ---YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
              YV+   M + Y    R++E   + + M+   ++ D
Sbjct: 916 PGPYVI---MSNIYAAAGRWKEVEDIRQMMKMKGVKKD 950


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/704 (36%), Positives = 403/704 (57%), Gaps = 32/704 (4%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
             L+S   +  + ++ KQ+HS  IK+G+ ++  ++  L+     +  D++ A + F    
Sbjct: 318 ASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYV-KCFDIETAHEYFLTTE 376

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             +V LWN M+  Y ++ +      I+L M    + P+ YT+P +L+  T   A++ G++
Sbjct: 377 TENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQ 436

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  V+K GF  +V+V + LI  Y   GE+D ARGI     ++DVV+W AM +GY +   
Sbjct: 437 IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDL 496

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
           F E  KLF EME +G+   ++     +SACA ++ L+ G++ H          +L + NA
Sbjct: 497 FAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNA 556

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L  +YA CG    A   F  I  KD ISW A+++G+   G  +                 
Sbjct: 557 LVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCE----------------- 599

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
                         EAL +F +M  + +  + FT  S ++A AN   ++ G+ +   + K
Sbjct: 600 --------------EALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIK 645

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
               ++    N LI +Y KCG +E A+R F EM  K+  +W AMI G + +G+G +++ +
Sbjct: 646 TGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSL 705

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F +M +  ++P+ VT+VGVLSAC+H G+V+EG  YF  M+ +HG+ P   HY C+VDLLG
Sbjct: 706 FEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLG 765

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           RA  L  A E I+ MP++P++++W  LL AC VH++ E+ E AA+ +LEL+P++ A YVL
Sbjct: 766 RAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVL 825

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L N+YA   +WD     RQM+ DRG+KK PG S IE+   +H F  GD+ HP  ++IY  
Sbjct: 826 LSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEY 885

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           +D++      +GY+ D   +  DV +E K+   Y HSEKLA+AFGL+S    + IR++KN
Sbjct: 886 IDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKN 945

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C DCH   K VS + +R ++VRD  RFHHF+ G CSCKDYW
Sbjct: 946 LRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 138/494 (27%), Positives = 240/494 (48%), Gaps = 34/494 (6%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +QIH++ I  G  ++P V N L+    S+ G +  A  VF ++       W  MI G S+
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLY-SKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQ 190

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  +L++  M KS V P  Y F  +L   T+    + G++LH  ++K+G  S  FV
Sbjct: 191 NGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFV 250

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL++ Y   G +  A  IF   ++ D +++N++ SG  +    D   +LF +M+   +
Sbjct: 251 CNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCM 310

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P  VT+  +LSACA +     GK+ H YV +  +  +LI+E +L D+Y  C ++  A E
Sbjct: 311 KPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHE 370

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
            F   + ++V+ W  ++  Y   G +                                E+
Sbjct: 371 YFLTTETENVVLWNVMLVAYGQLGNLS-------------------------------ES 399

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
             +F +MQ   + P+++T  SIL  C +LGAL+LGE + T + K+  + +++V + LIDM
Sbjct: 400 YWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDM 459

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y K G+++ A+ + + +  +D  +WTAMI G   +    ++L +F +M    I  D + +
Sbjct: 460 YAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGF 519

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
              +SAC     +++G++  A   I  G   + +    +V L  R G   +A    + + 
Sbjct: 520 SSAISACAGIQALNQGQQIHAQSYIS-GYSEDLSIGNALVSLYARCGRAQDAYLAFEKID 578

Query: 513 MKPNSIVWGALLGA 526
            K N I W AL+  
Sbjct: 579 AKDN-ISWNALISG 591



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/504 (26%), Positives = 244/504 (48%), Gaps = 35/504 (6%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S+   K++H++  K G      + ++L+    +  G++  A K+F  IP  +V  WN +I
Sbjct: 25  SLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAH-GEVDNAIKLFDDIPSSNVSFWNKVI 83

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-VEFGKELHCHVLKFGF 146
            G          + ++  M+  +V PD  TF  +L+  +   A  +  +++H  ++  GF
Sbjct: 84  SGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGF 143

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
            SS  V N LI  Y   G VD+A+ +F+  +  D V+W AM SG  +  + DE   LF +
Sbjct: 144 GSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQ 203

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M +  V+PT      VLSAC K++   +G++ H ++ +  +     + NAL  +Y+  G 
Sbjct: 204 MHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGN 263

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +  A +IF  +  +D IS+ ++++G   RG  D                           
Sbjct: 264 LIAAEQIFSKMHRRDRISYNSLISGLAQRGFSD--------------------------- 296

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
                AL LF +MQ   ++PD  T+ S+L+ACA++GA   G+ + +Y+ K  + +D+ + 
Sbjct: 297 ----RALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIE 352

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
            +L+D+Y KC D+E A   F     ++   W  M+V     G+  +S  +F QM    ++
Sbjct: 353 GSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLM 412

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P++ TY  +L  CT  G +D G E      I+ G + N      ++D+  + G L+ A  
Sbjct: 413 PNQYTYPSILRTCTSLGALDLG-EQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARG 471

Query: 507 VIKNMPMKPNSIVWGALLGACRVH 530
           +++ +  + + + W A++     H
Sbjct: 472 ILQRL-REEDVVSWTAMIAGYTQH 494



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 127/513 (24%), Positives = 225/513 (43%), Gaps = 68/513 (13%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           M +  +R +  T+ +L +G     ++   K+LH  + K GFD    + + LI  Y   GE
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           VD A  +FD     +V  WN + SG    K   +   LF  M  + V P   T   VL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 226 CAKLK-DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           C+  K    V ++ H  +       + ++ N L D+Y+  G +  A  +F  +  KD +S
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           W A+++G    G+ D                               EA+ LF +M  S +
Sbjct: 181 WVAMISGLSQNGRED-------------------------------EAILLFCQMHKSAV 209

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
            P  +   S+L+AC  +   +LGE +  +I K  + ++ FV NAL+ +Y + G++  A++
Sbjct: 210 IPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQ 269

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           +F +M R+D+ ++ ++I GLA  G  D++L +F +M    + PD VT   +LSAC   G 
Sbjct: 270 IFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGA 329

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDL------------------------------ 494
             +G++      I+ G+  +    G ++DL                              
Sbjct: 330 GYKGKQ-LHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLV 388

Query: 495 -LGRAGHLNEALEVIKNMPMK---PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD- 549
             G+ G+L+E+  +   M ++   PN   + ++L  C      ++ E    Q+++     
Sbjct: 389 AYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQF 448

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           N  V  +L ++YA     D  R + Q + +  +
Sbjct: 449 NVYVCSVLIDMYAKHGELDTARGILQRLREEDV 481


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/690 (38%), Positives = 399/690 (57%), Gaps = 37/690 (5%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           K+IH   I  G   N      +V     C +  D   A  +F ++P   +  WNTMI GY
Sbjct: 50  KEIHGSVITSGFSWNLFAMTGVVNMYAKCRQIND---AYNMFDRMPERDLVCWNTMISGY 106

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           ++    K  +++ L M +   RPD+ T   +L        +  G  +H +VL+ GF+S V
Sbjct: 107 AQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLV 166

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            V  AL+  Y  CG V +AR IFD      VV+WN+M  GY +    +    +F +M  +
Sbjct: 167 NVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDE 226

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           GV PT+VT++  L ACA L DL+ GK  H+ V + K+  ++ + N+L  MY+ C  +  A
Sbjct: 227 GVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIA 286

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            +IF N++NK +                               V W AMI GY +     
Sbjct: 287 ADIFKNLRNKTL-------------------------------VSWNAMILGYAQNGCVN 315

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           EAL  F EMQ+ NI+PD FT+VS++ A A L      +W+   + +  +  ++FV  AL+
Sbjct: 316 EALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALV 375

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMY KCG +  A+++F  M  +   TW AMI G   +G G  S+++F +M + +I P+++
Sbjct: 376 DMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDI 435

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T++  LSAC+H+G+V+EG  +F  M   +GIEP   HYG MVDLLGRAG LN+A + I+ 
Sbjct: 436 TFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQK 495

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MP+KP   V+GA+LGAC++H++ ++ E AA +I +L+PD+   +VLL NIYA  + W   
Sbjct: 496 MPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKV 555

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
            ++R ++   G++KTPGCS++E+   VH F +G  SHPQ+K+IY  L+ +  +++  GY+
Sbjct: 556 AKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYV 615

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           PD + +  DV ++ K + +  HSEKLA+AFGL+++  G  I I KNLR+C DCH   K +
Sbjct: 616 PDTNSIH-DVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYI 674

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+V  RE+IVRD  RFH FK G CSC DYW
Sbjct: 675 SLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 104/237 (43%), Gaps = 4/237 (1%)

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           M+ GY + +    AL+ F  M+  ++RP  +    +L  C +   L+ G+ +   +  + 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
              ++F    +++MY KC  +  A  +F  M  +D   W  MI G A NG    +L +  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M      PD +T V +L A   T ++  G        ++ G E        +VD+  + 
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHG-YVLRAGFESLVNVSTALVDMYSKC 179

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAV 553
           G ++ A  +   M  +   + W +++       DAE A +  +++L+  + P N  V
Sbjct: 180 GSVSIARVIFDGMDHR-TVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTV 235


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/719 (37%), Positives = 403/719 (56%), Gaps = 40/719 (5%)

Query: 5   SSISPPSTLTQETPLISPIETCESMH---QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           S I P      E  L S +  C  +    + K IH   IKLG   +P   N LV    ++
Sbjct: 252 SGIKP-----NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMY-AK 305

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
            GD+  A  VF KI +P +  WN +I G    + H+  + +   M +S + P+ +T    
Sbjct: 306 VGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSA 365

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           LK        E G++LH  ++K   +S +FV   L+  Y  C  ++ AR  F++  + D+
Sbjct: 366 LKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 425

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           + WNA+ SGY +  +  E   LF EM ++G+     T+  +L + A L+ + V ++ H  
Sbjct: 426 IAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGL 485

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
             +     ++ + N+L D Y  C                                 V+ A
Sbjct: 486 SVKSGFHSDIYVVNSLIDSYGKCS-------------------------------HVEDA 514

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
            + F++    D V +T+MI  Y +  +  EAL LF EMQ   ++PD F   S+L ACANL
Sbjct: 515 ERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANL 574

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            A E G+ +  +I K     DIF GN+L++MY KCG ++ A R F E+  +   +W+AMI
Sbjct: 575 SAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMI 634

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            GLA +GHG ++L +F+QML+  + P+ +T V VL AC H G+V E + YF  M    G 
Sbjct: 635 GGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGF 694

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           +P + HY CM+DLLGRAG +NEA+E++  MP + N+ VWGALLGA R+H+D E+   AA+
Sbjct: 695 KPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAE 754

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
            +  L+P+    +VLL NIYA+  +W+N  E+R+++ D  +KK PG S IE+   V+ F+
Sbjct: 755 MLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFL 814

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
            GD+SH +++EIY KLDE++  +   GY+P +     DV + +KE  +Y HSEKLA+AFG
Sbjct: 815 VGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFG 874

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LI++  G  IR+ KNLR+CVDCH   K +  +  RE+IVRD  RFHHFK GSCSC DYW
Sbjct: 875 LIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 157/614 (25%), Positives = 277/614 (45%), Gaps = 81/614 (13%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P++++  + L+S   T +S+    QIH+   K GL  +P+++N L+    S+  +  YA 
Sbjct: 54  PTSVSY-SKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLY-SKCRNFGYAR 111

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           K+  +   P +  W+ +I GY++       ++ + +M    V+ + +TF  +LK  +   
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVK 171

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            +  GK++H  V+  GF+  VFV N L+  Y  C E   ++ +FD   + +VV+WNA+FS
Sbjct: 172 DLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFS 231

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
            Y ++    E   LF EM   G+ P   ++  +++AC  L+D   GK  H Y+ +     
Sbjct: 232 CYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW 291

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           +    NAL DMYA  G++  A+ +F  IK  D++SW A++ G +                
Sbjct: 292 DPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLH-------------- 337

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
                                +AL L  +M+ S I P+ FT+ S L ACA +G  ELG  
Sbjct: 338 -----------------EHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQ 380

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           + + + K  +++D+FV   L+DMY KC  +E A+  F  +  KD   W A+I G +    
Sbjct: 381 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 440

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
             ++L +F +M +  I  ++ T   +L +     +V   R+    ++++ G   +     
Sbjct: 441 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHG-LSVKSGFHSDIYVVN 499

Query: 490 CMVDLLGRAGHLNEALEV----------------------------------IKNMPMKP 515
            ++D  G+  H+ +A  +                                  +++M +KP
Sbjct: 500 SLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKP 559

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL-------LCNIYAACNRWD 568
           +  V  +LL AC      E  +     IL+        +VL       L N+YA C   D
Sbjct: 560 DRFVCSSLLNACANLSAFEQGKQLHVHILKYG------FVLDIFAGNSLVNMYAKCGSID 613

Query: 569 NFRELRQMILDRGI 582
           +       + +RGI
Sbjct: 614 DAGRAFSELTERGI 627



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 206/433 (47%), Gaps = 35/433 (8%)

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           D     +L  +D  K +  P + ++  LL       ++  G ++H H+ K G      ++
Sbjct: 37  DPQTTAILNLID--KGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIR 94

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N LI+ Y  C     AR + D S + D+V+W+A+ SGY +          F EM   GV 
Sbjct: 95  NHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
               T   VL AC+ +KDL +GK+ H  V       ++ + N L  MYA C E       
Sbjct: 155 CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF------ 208

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                                   +D +++ FD++PER+ V W A+   Y++++   EA+
Sbjct: 209 ------------------------LD-SKRLFDEIPERNVVSWNALFSCYVQIDFCGEAV 243

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LF EM  S I+P+EF++ S++ AC  L     G+ +  Y+ K     D F  NAL+DMY
Sbjct: 244 GLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMY 303

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            K GD+  A  VF ++ + D  +W A+I G  ++ H +++L++  QM R+ I P+  T  
Sbjct: 304 AKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLS 363

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
             L AC   G+ + GR+  + + ++  +E +      +VD+  +   L +A      +P 
Sbjct: 364 SALKACAGMGLKELGRQLHSSL-MKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPE 422

Query: 514 KPNSIVWGALLGA 526
           K + I W A++  
Sbjct: 423 K-DLIAWNAIISG 434



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 164/349 (46%), Gaps = 38/349 (10%)

Query: 192 KRVKQFDE---TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           + V QF +   T  +   +++    PTSV+   +LS C   K L  G + H ++ +  + 
Sbjct: 29  QTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLS 88

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            +  + N L ++Y+ C   G+A ++       D++SW+A+++GY   G            
Sbjct: 89  DDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNG------------ 136

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                      + G         AL  F EM    ++ +EFT  S+L AC+ +  L +G+
Sbjct: 137 -----------LGG--------GALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGK 177

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            V   +  +  + D+FV N L+ MY KC +   ++R+F E+  ++  +W A+        
Sbjct: 178 QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQID 237

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR-EYFADMTIQHGIEPNEAH 487
              +++ +F +M+ + I P+E +   +++AC  TG+ D  R +      I+ G + +   
Sbjct: 238 FCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC--TGLRDSSRGKIIHGYLIKLGYDWDPFS 295

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
              +VD+  + G L +A+ V + +  +P+ + W A++  C +H   E A
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQA 343


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/697 (37%), Positives = 406/697 (58%), Gaps = 37/697 (5%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           S++GDM   C+ F ++P+     W TMI GY  I  +   + +  DM+K  + P  +T  
Sbjct: 91  SKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 150

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L        +E GK++H  ++K G   +V V N+L++ Y  CG+  MA+ +FD     
Sbjct: 151 NVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVR 210

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-------------------------- 213
           D+ +WNAM + + +V Q D     F +M  + ++                          
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKML 270

Query: 214 ------PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
                 P   T+  VLSACA L+ L +GK+ H ++       + I+ NAL  MY+ CG +
Sbjct: 271 RDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGV 330

Query: 268 GFALEIFGNIKNKD--VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
             A  +      KD  +  +TA++ GYI  G ++ A+  F  + +RD V WTAMI GY +
Sbjct: 331 ETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQ 390

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
              + EA+ LFR M     RP+ +T+ ++L+  ++L +L  G+ +     K+     + V
Sbjct: 391 HGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSV 450

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
            NALI MY K G++  A R F +++R  +D  +WT+MI+ LA +GH +++L++F  ML  
Sbjct: 451 SNALITMYAKAGNITSASRAF-DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLME 509

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            + PD +TYVGV SACTH G+V++GR+YF  M     I P  +HY CMVDL GRAG L E
Sbjct: 510 GLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQE 569

Query: 504 ALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563
           A E I+ MP++P+ + WG+LL ACRVH++ ++ ++AA+++L L+P+N   Y  L N+Y+A
Sbjct: 570 AQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSA 629

Query: 564 CNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSD 623
           C +W+   ++R+ + D  +KK  G S IE+   VH F   D +HP+  EIY+ + ++  +
Sbjct: 630 CGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDE 689

Query: 624 LKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDC 683
           +K +GY+PD + V  D+ EE KE+ +  HSEKLA+AFGLIS+    T+RI+KNLR+C DC
Sbjct: 690 IKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDC 749

Query: 684 HRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           H   K +S +  RE+IVRD TRFHHFK G CSC+DYW
Sbjct: 750 HTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 138/532 (25%), Positives = 254/532 (47%), Gaps = 53/532 (9%)

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           N + K  ++ +      L++  ++KS +    Y    L+  +++      G  LH   L 
Sbjct: 18  NLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKT-----GYALHARKL- 71

Query: 144 FGFDS----SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
             FD     + F  N ++S Y   G++D     FD   + D V+W  M  GYK + Q+ +
Sbjct: 72  --FDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHK 129

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             ++ G+M ++G+ PT  T+  VL++ A  + ++ GK+ H ++ +  +  N+ + N+L +
Sbjct: 130 AIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLN 189

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA CG+   A  +F  +  +D+ SW A++  ++  GQ+D+A   F+QM ERD V W +M
Sbjct: 190 MYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSM 249

Query: 320 IDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           I G+ +      AL +F +M + S + PD FT+ S+L+ACANL  L +G+ + ++I    
Sbjct: 250 ISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTG 309

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQR---------------------------------V 405
                 V NALI MY +CG VE A+R                                 +
Sbjct: 310 FDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNI 369

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F  +  +D   WTAMIVG   +G   +++++F  M+     P+  T   +LS  +    +
Sbjct: 370 FVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASL 429

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
             G++      ++ G   + +    ++ +  +AG++  A      +  + +++ W +++ 
Sbjct: 430 SHGKQIHGS-AVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMII 488

Query: 526 ACRVHRDAEMA-EMAAKQILE-LDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           A   H  AE A E+    ++E L PD    ++    +++AC       + RQ
Sbjct: 489 ALAQHGHAEEALELFETMLMEGLRPD----HITYVGVFSACTHAGLVNQGRQ 536



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 165/341 (48%), Gaps = 41/341 (12%)

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKE---CKIVPN-----LILENALTDMYAACG 265
           P  +++  +L  C  L    V K   R+  +   C+++ +     + L N L ++Y+  G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
               A ++F  +  +   SW  +++ Y  RG +D   ++FDQ+P+RD V WT MI GY  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
           + ++ +A+ +  +M    I P +FT+ ++L + A    +E G+ V ++I K  ++ ++ V
Sbjct: 124 IGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSV 183

Query: 386 GNALIDMYCKCGDVEKAQRV-------------------------------FREMLRKDK 414
            N+L++MY KCGD   A+ V                               F +M  +D 
Sbjct: 184 SNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDEGREYFA 473
            TW +MI G    G+  ++LD+FS+MLR S++ PD  T   VLSAC +   +  G++  +
Sbjct: 244 VTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS 303

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
            + +  G + +      ++ +  R G +  A  +I+    K
Sbjct: 304 HI-VTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTK 343



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 137/569 (24%), Positives = 220/569 (38%), Gaps = 136/569 (23%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS--------- 60
           P+  T  T +++ +     M   K++HS  +KLGL  N +V N L+              
Sbjct: 144 PTQFTL-TNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKF 202

Query: 61  ---------------------EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNG 99
                                + G M  A   F ++    +  WN+MI G+++       
Sbjct: 203 VFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRA 262

Query: 100 VLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
           + I+  ML+ S + PD +T   +L        +  GK++H H++  GFD S  V NALIS
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALIS 322

Query: 159 TYCLCGEVDMARGIFD--------------------------------VSYKD-DVVTWN 185
            Y  CG V+ AR + +                                VS KD DVV W 
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           AM  GY++   + E   LF  M   G  P S T+  +LS  + L  L  GK+ H    + 
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS 442

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQY 304
             + ++ + NAL  MYA  G +  A   F  I+  +D +SWT+++      G  +     
Sbjct: 443 GEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE----- 497

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                                     EAL LF  M    +RPD  T V + +AC + G +
Sbjct: 498 --------------------------EALELFETMLMEGLRPDHITYVGVFSACTHAGLV 531

Query: 365 ELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
             G ++     D +K+   +     ++D++ + G +++AQ    +M              
Sbjct: 532 NQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM-------------- 577

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
                                I PD VT+  +LSAC     +D G+     + +   +EP
Sbjct: 578 --------------------PIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLL---LEP 614

Query: 484 -NEAHYGCMVDLLGRAGHLNEALEVIKNM 511
            N   Y  + +L    G   EA ++ K+M
Sbjct: 615 ENSGAYSALANLYSACGKWEEAAKIRKSM 643


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/520 (46%), Positives = 347/520 (66%), Gaps = 33/520 (6%)

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
            +  M R  VLP+  +  L+L +CA   +  +G+  H     C+I+              
Sbjct: 17  FYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFH-----CQIM-------------- 57

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY--VLWTAMI 320
              +MGF           D+I  T ++  Y   G V+ AR  FD M ER+   V W  MI
Sbjct: 58  ---KMGFEY---------DMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMI 105

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
             Y++   F  A+++F++MQ+ N++P E T+VS+L+ACA+LGAL++GEW+  YI   ++K
Sbjct: 106 SAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLK 165

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D+ +GNALIDMYCKCG +E A  VF  + RK+ F W ++IVGL +NG G++++  F  M
Sbjct: 166 IDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVM 225

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
            +  I PD VT+VG+LS C+H+G++  G+ YF++M   +G+EP   HYGCMVDLLGRAG+
Sbjct: 226 EKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGY 285

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L EALE+I+ MPMKPNS+V G+LL AC++H+D ++ E   +Q+LELDP +   YV L N+
Sbjct: 286 LKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNL 345

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YA+ +RWD+    R++++ RG+ KTPGCS IE+N +VHEFVAGD SHPQ  +I   LDE+
Sbjct: 346 YASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEI 405

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
             +LK  G++P+ + V  D+ EE+KE A+  HSE++A+AFGL+S+ PG TIR+VKNLR C
Sbjct: 406 AKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTC 465

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            DCH   KL+S  + RE+IVRD+ RFHHF++GSCSC DYW
Sbjct: 466 SDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 155/324 (47%), Gaps = 38/324 (11%)

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           Y  ML++DV P   +F  +L+        + G+  HC ++K GF+  + +Q  L+  Y  
Sbjct: 18  YSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAK 77

Query: 163 CGEVDMARGIFD--VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
            G V+ AR +FD       + VTWN M S Y +  +F     +F +M+ + V PT VT+V
Sbjct: 78  HGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMV 137

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            +LSACA L  LD+G+  H Y++  ++  +++L NAL DMY  CG +  A+++F  +  K
Sbjct: 138 SLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRK 197

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           ++  W +I+ G    G                               R  EA+  F  M+
Sbjct: 198 NIFCWNSIIVGLGMNG-------------------------------RGEEAIAAFIVME 226

Query: 341 TSNIRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
              I+PD  T V IL+ C++ G L  G+ +    +    ++  +     ++D+  + G +
Sbjct: 227 KEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYL 286

Query: 400 EKAQRVFREMLRKDKFTWTAMIVG 423
           ++A  + R M  K      +M++G
Sbjct: 287 KEALELIRAMPMKP----NSMVLG 306



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 10/247 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR--PSVCLWNTMIKGY 90
           +  H Q +K+G   +  +Q  L+ F  ++ G ++ A  +F  +     +   WNTMI  Y
Sbjct: 50  EAFHCQIMKMGFEYDMILQTGLLDFY-AKHGYVEEARNLFDNMTERNSNSVTWNTMISAY 108

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
            +       + ++  M   +V+P   T   LL       A++ G+ +H ++        V
Sbjct: 109 VQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDV 168

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            + NALI  YC CG ++ A  +F    + ++  WN++  G     + +E    F  ME++
Sbjct: 169 VLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKE 228

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV----PNLILENALTDMYAACGE 266
           G+ P  VT V +LS C+    L  G+   RY  E   V    P +     + D+    G 
Sbjct: 229 GIKPDGVTFVGILSGCSHSGLLSAGQ---RYFSEMLGVYGLEPGVEHYGCMVDLLGRAGY 285

Query: 267 MGFALEI 273
           +  ALE+
Sbjct: 286 LKEALEL 292



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 12/238 (5%)

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L  +  M  +++ P + +   IL +CA  G  +LGE     I K   + D+ +   L+D 
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 393 YCKCGDVEKAQRVFREMLRK--DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           Y K G VE+A+ +F  M  +  +  TW  MI      G    ++ MF QM   ++ P EV
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T V +LSAC H G +D G E+         ++ +      ++D+  + G L  A++V   
Sbjct: 135 TMVSLLSACAHLGALDMG-EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHG 193

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE---LDPDNEAVYVLLCNIYAACN 565
           +  K N   W +++    ++   E A +AA  ++E   + PD     V    I + C+
Sbjct: 194 LSRK-NIFCWNSIIVGLGMNGRGEEA-IAAFIVMEKEGIKPDG----VTFVGILSGCS 245


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 235/509 (46%), Positives = 347/509 (68%)

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           VLP + T   VL AC KL D+  GK  H   ++     NL L+N + ++Y  CGEMG A+
Sbjct: 6   VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            +F  +  +D ++W  ++     RG +D A  +F +MP ++   WT+MI G+++  +  E
Sbjct: 66  LLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNE 125

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           A+ LF +++   +RP+E T+VS+L ACA+LG L+LG  V  Y  K+  K ++ V N LID
Sbjct: 126 AIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLID 185

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCG +E A+RVF EM  +   +W+AMI GLA++G  +++L +FS+M++  + P+ VT
Sbjct: 186 MYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVT 245

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           ++G+L AC+H G++DEGR +FA MT  +G+ P   HYGC+VDL  RAG L EA E I +M
Sbjct: 246 FIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSM 305

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P+KPN +VWGALLG C+VH++ ++AE A K + ELDP N+  YV++ NIYA   RW++  
Sbjct: 306 PIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAA 365

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            +R+++ DRG+KKT G S I +NGVVHEFVAGD++HPQ ++I    D++   +K  GY P
Sbjct: 366 RVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAP 425

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
             S V LD+ E++KE+ +Y+HSEKLA+ FGL+++  G  IRI+KNLR+C DCH   K++S
Sbjct: 426 KTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKIIS 485

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +  RE+IVRD+ RFH F+ G CSC+D+W
Sbjct: 486 GIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 169/366 (46%), Gaps = 68/366 (18%)

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
           DV PD +T  F+LK   +   V  GK +H    K GF S++F+QN +++ Y LCGE+  A
Sbjct: 5   DVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDA 64

Query: 170 RGIFDVSYKDDVVTWN-------------------------------AMFSGYKRVKQFD 198
             +F+   + D VTWN                               +M SG+ +  + +
Sbjct: 65  MLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPN 124

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E   LF ++E + V P  VT+V VL+ACA L DLD+G+  H Y  +     N+ + N L 
Sbjct: 125 EAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLI 184

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMY  CG +  A  +F  ++ + V+SW+A++ G    GQ +                   
Sbjct: 185 DMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAE------------------- 225

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKN 377
                       EAL LF EM    ++P+  T + +L AC+++G ++ G  +  +     
Sbjct: 226 ------------EALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADY 273

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDM 436
            V   I     ++D++ + G +E+A      M ++ +   W A++ G  ++    K++D+
Sbjct: 274 GVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVH----KNIDL 329

Query: 437 FSQMLR 442
             + ++
Sbjct: 330 AEEAIK 335



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 139/291 (47%), Gaps = 5/291 (1%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           +++GD+  A   F ++P  +V  W +MI G+ +       + +++ +    VRP+  T  
Sbjct: 87  AKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVV 146

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L        ++ G+ +H +  K GF  +V V N LI  Y  CG ++ AR +F    + 
Sbjct: 147 SVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEER 206

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
            VV+W+AM +G     Q +E   LF EM + GV P  VT + +L AC+ +  +D G+R  
Sbjct: 207 TVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFF 266

Query: 240 -RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQ 297
                +  ++P +     + D+++  G +  A E   ++  K + + W A++ G      
Sbjct: 267 ASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKN 326

Query: 298 VDMARQYFDQMPERDYV---LWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           +D+A +    + E D +    +  + + Y    R+ +A  + + M+   ++
Sbjct: 327 IDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVK 377



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 33/239 (13%)

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M+  ++ PD FT   +L AC  L  +  G+ +     K    +++F+ N ++++Y  CG+
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 399 VEKAQRVFREMLRKDKFT-------------------------------WTAMIVGLAIN 427
           +  A  +F +M ++D  T                               WT+MI G    
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G  ++++D+F ++   ++ P+EVT V VL+AC   G +D GR    + + + G + N   
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGR-IVHEYSTKSGFKRNVHV 179

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
              ++D+  + G L  A  V   M  +   + W A++    +H  AE A     ++++L
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEMEER-TVVSWSAMIAGLAMHGQAEEALCLFSEMIKL 237


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/709 (36%), Positives = 397/709 (55%), Gaps = 40/709 (5%)

Query: 19  LISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            +  I  C S   LKQ   +H+  ++  LL    +    +    +   D++ A K F ++
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD---VRPDNYTFPFLLKGFTRDIAVE 132
            + ++  WN +I GYSR   H+  + IY DM+      ++PD  TF   L   T    + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G+E+    +  G+ S   VQNALI+ Y  CG ++ AR +FD     DV+ WN M SGY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +     +  +LF  M      P  VT + +L+AC  L+DL+ G+  HR V+E     +L+
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLV 300

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + N L +MY  C                                 ++ ARQ F++M  RD
Sbjct: 301 IGNVLLNMYTKCSS------------------------------SLEEARQVFERMRTRD 330

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            + W  +I  Y++  + ++AL +F++MQ  N+ P+E T+ ++L+ACA LGA   G+ V  
Sbjct: 331 VITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHA 390

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            I   + K D+ + N+L++MY +CG ++    VF  +  K   +W+ +I   A +GH   
Sbjct: 391 LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRT 450

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
            L+ F ++L+  +  D+VT V  LSAC+H GM+ EG + F  M   HG+ P+  H+ CMV
Sbjct: 451 GLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMV 510

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE- 551
           DLL RAG L  A  +I +MP  P+++ W +LL  C++H D + A   A ++ EL+ ++E 
Sbjct: 511 DLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH 570

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
           +   LL N+YA   RWD+ R+ R     R  +K PGCS IE+N  VHEFVAGDKSHP+ +
Sbjct: 571 STVTLLSNVYAEAGRWDDVRKTRNR---RAARKNPGCSYIEINDTVHEFVAGDKSHPEEE 627

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            I  ++  ++  +K  GY+PD+  V  +V EE+KE+ +  HSEKLA+A+GLIS+ PG  +
Sbjct: 628 LIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPL 687

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            IVKNLR CVDCH  AK +S +  R+++VRD TRFHHF++GSCSCKDYW
Sbjct: 688 HIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 195/411 (47%), Gaps = 42/411 (10%)

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
           Y  CG V  A  +F      + V+W  + + + R   + E    +  M  +G+ P     
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVP-NLILENALTDMYAACGEMGFALEIFGNIK 278
           V+ +  C+  KDL  G+  H  + E +++  ++IL  AL  MYA C ++           
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDL----------- 110

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
                               ++AR+ FD+M ++  V W A+I GY R    R AL ++++
Sbjct: 111 --------------------ELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQD 150

Query: 339 MQTSN---IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
           M + +   ++PD  T  S L AC  +G +  G  ++     +   +D  V NALI+MY K
Sbjct: 151 MVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSK 210

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG +E A++VF  +  +D   W  MI G A  G   ++L++F +M      P+ VT++G+
Sbjct: 211 CGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGL 270

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR-AGHLNEALEVIKNMPMK 514
           L+ACT+   +++GR     +  + G E +      ++++  + +  L EA +V + M  +
Sbjct: 271 LTACTNLEDLEQGRAIHRKVR-EDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR 329

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQI-LELDPDNEAVYVLLCNIYAAC 564
            + I W  L+ A   +  A+ A    KQ+ LE    NE   + L N+ +AC
Sbjct: 330 -DVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE---ITLSNVLSAC 376



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 153/355 (43%), Gaps = 71/355 (20%)

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY  CG +  AL +F  I++ + +SWT IV  +   G                       
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGH---------------------- 38

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK- 378
                    +REAL  +R M    +RPD    V  +  C++   L+ G+ +   I + + 
Sbjct: 39  ---------YREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETRL 89

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           ++ DI +G ALI MY +C D+E A++ F EM +K   TW A+I G + NG    +L ++ 
Sbjct: 90  LEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQ 149

Query: 439 QMLRAS---IIPDEVTYVGVLSACTHTGMVDEGRE---------YFADMTIQHGI----- 481
            M+  S   + PD +T+   L ACT  G + +GRE         Y +D  +Q+ +     
Sbjct: 150 DMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYS 209

Query: 482 ----------------EPNEAHYGCMVDLLGRAGHLNEALEVIKNM---PMKPNSIVWGA 522
                             +   +  M+    + G   +ALE+ + M     KPN + +  
Sbjct: 210 KCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIG 269

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVY-VLLCNIYAACNRWDNFRELRQM 576
           LL AC    D E      +++ E   +++ V   +L N+Y  C+   +  E RQ+
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCS--SSLEEARQV 322


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/589 (41%), Positives = 380/589 (64%), Gaps = 4/589 (0%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLC---GEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           +++H  +LK G        + L++ +C     G +  AR +FD  ++ +   WN M  GY
Sbjct: 35  RQIHGQMLKTGLILDEIPASKLLA-FCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGY 93

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
              K+ +E   L+  M    V   + T   +L AC+ +  L+  ++ H ++ +      +
Sbjct: 94  SNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEI 153

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
              N+L ++Y+  G++  A  +F  +  +D +SW +++ GY   G+++MA + F+ MPER
Sbjct: 154 YTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPER 213

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           + + WT+MI G +   + +EAL LF  MQT+ I+ D   +VS L ACA+LG L+ G+W+ 
Sbjct: 214 NIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIH 273

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            YI K++++ D  +G  LIDMY KCGD+E+A  VFR+M  K    WTAMI G AI+G G 
Sbjct: 274 AYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGR 333

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L+ F +M  A + P+++T+ G+L+AC+H G+V E +  F  M   HG +P+  HYGCM
Sbjct: 334 EALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCM 393

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAG L EA E+I+NMP+KPN+ +WGALL AC +H + E+ +   K ++++DP + 
Sbjct: 394 VDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHG 453

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             Y+ L +I+AA   W+    +R+ + ++G+ K PGCS+I +NG  HEF+AGD+SHPQ K
Sbjct: 454 GRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIK 513

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           EI   L+++   L+  GY P + ++ LD+ +++KE A++ HSEKLA+ FGLIS+ PG+TI
Sbjct: 514 EIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTI 573

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RIVKNLR+C DCH + KL+S VY RE+++RD+TRFH FK G+C+C DYW
Sbjct: 574 RIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 228/458 (49%), Gaps = 68/458 (14%)

Query: 8   SPPSTLTQET---PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKG 63
           +P S L+ E+     +  ++ C +M +L+QIH Q +K GL+ +    +KL+ FC S   G
Sbjct: 7   TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSG 66

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            + YA  VF +I RP+  +WNTMI+GYS     +  +L+Y  ML   V  + YTFPFLLK
Sbjct: 67  SLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLK 126

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
             +   A+E  +++H H++K GF S ++  N+L++ Y   G++  AR +FD   + D V+
Sbjct: 127 ACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVS 186

Query: 184 WNAMFSGYKRVKQFD-------------------------------ETRKLFGEMERKGV 212
           WN+M  GY +  + +                               E   LF  M+  G+
Sbjct: 187 WNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGI 246

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
              +V +V  L ACA L  LD GK  H Y+K+ +I  + IL   L DMYA CG++  A+E
Sbjct: 247 KLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIE 306

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  ++ K V  WTA+++GY   G                               R REA
Sbjct: 307 VFRKMEEKGVSVWTAMISGYAIHG-------------------------------RGREA 335

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFVGNALID 391
           L  F +MQT+ + P++ T   ILTAC++ G +   + +   +++ +  K  I     ++D
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 395

Query: 392 MYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
           +  + G +++A+ +   M ++ +   W A++    I+G
Sbjct: 396 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/720 (38%), Positives = 415/720 (57%), Gaps = 37/720 (5%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTN-PTVQNKL--VTFCCSEKGDMKYACKVFRKIPR 77
           SP  T  S+ Q  Q+H+     G + + P+ ++ L  +T C S    ++Y   +F ++P 
Sbjct: 4   SPWPTPRSVRQASQLHAILTTSGRIAHRPSAEHLLNSLTNCLSAPRHLRYVLSLFDRLPH 63

Query: 78  PSVCLWNTMIKGYSRIDSHKN-GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           P+  L +T ++   +  +  +  VLI   M +  VR   +TF F+ +           + 
Sbjct: 64  PTTFLHDTALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCRM 123

Query: 137 LHCHVLKFGFDSSV-FVQNALISTYCLCGEVDMARGIFD-VSYKD--------------- 179
           LH   L+    S+   V N LI  Y   G  D AR  FD V  KD               
Sbjct: 124 LHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWG 183

Query: 180 ---------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
                          +VV+W ++ +GY R  +  +    F  M   GV P  V ++  LS
Sbjct: 184 LLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALS 243

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI-KNKDVI 283
           AC+KLK+L+ G+  H  V + +I     L   L DMYA CG++  A  +F  + + +   
Sbjct: 244 ACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPE 303

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
            W  I+ GY   G VD+AR  FDQM  RD + + +MI GY+   R R+AL LF +++   
Sbjct: 304 PWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHG 363

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           +R D FT+VS+LTACA+LGAL  G  +   I++  V+ D+++  AL+DMY KCG V++A 
Sbjct: 364 MRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEAT 423

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
            VF  M  +D  TW+AMI GLA NG G  +L+ F QM R    P  VTY+ VL+AC+H+ 
Sbjct: 424 AVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSS 483

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
           +++EGR++F +M   H + P   HYGCM+DLL R+G L+EA+ +++ MPM+PN+++W ++
Sbjct: 484 LLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASI 543

Query: 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           L ACRVH++ ++A  AA+ +L+L P+ +AVYV L NIY    +W   + +R ++ ++G+K
Sbjct: 544 LSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGVK 603

Query: 584 KTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEE 643
           KT G S I + G VH+FV  D+SHP T EI   ++E+   LK  GY P  S + +DV EE
Sbjct: 604 KTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKSAGYSPATSRIAVDVDEE 663

Query: 644 DKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDK 703
           +KE+A+  HSEK+A+AFGLIS  P + I I+KNLR+C DCH   KL+S +++RE+IVRD+
Sbjct: 664 EKEQALLAHSEKIAIAFGLISLPPNLPIHIMKNLRVCEDCHSAIKLISQLWNREIIVRDR 723


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/709 (36%), Positives = 397/709 (55%), Gaps = 40/709 (5%)

Query: 19  LISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            +  I  C S   LKQ   +H+  ++  LL    +    +    +   D++ A K F ++
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD---VRPDNYTFPFLLKGFTRDIAVE 132
            + ++  WN +I GYSR   H+  + IY DM+      ++PD  TF   L   +    + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G+E+    +  G+ S   VQNALI+ Y  CG ++ AR +FD     DV+ WN M SGY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +     +  +LF  M      P  VT + +L+AC  L+DL+ G+  HR VKE     +L+
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLV 300

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + N L +MY  C                                 ++ ARQ F+++  RD
Sbjct: 301 IGNVLLNMYTKCSS------------------------------SLEEARQVFERLRTRD 330

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            + W  +I  Y++  + ++AL +F++MQ  N+ P+E T+ ++L+ACA LGA   G+ V  
Sbjct: 331 VITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHA 390

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            I   + K D+ + N+L++MY +CG ++    VF  +  K   +W+ +I   A +GH   
Sbjct: 391 LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRT 450

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
            L+ F ++L+  +  D+VT V  LSAC+H GM+ EG + F  M   HG+ P+  H+ CMV
Sbjct: 451 GLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMV 510

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE- 551
           DLL RAG L  A  +I +MP  P+++ W +LL  C++H D + A   A ++ EL+ ++E 
Sbjct: 511 DLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH 570

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
           +   LL N+YA   RWD+ R+ R     R  +K PGCS IE+N  VHEFVAGDKSHP+ +
Sbjct: 571 STVTLLSNVYAEAGRWDDVRKTRNR---RAARKNPGCSYIEINDTVHEFVAGDKSHPEEE 627

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            I  ++  ++  +K  GY+PD+  V  +V EE+KE+ +  HSEKLA+A+GLIS+ PG  +
Sbjct: 628 LIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPL 687

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            IVKNLR CVDCH  AK +S +  R+++VRD TRFHHF++GSCSCKDYW
Sbjct: 688 HIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 197/411 (47%), Gaps = 42/411 (10%)

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
           Y  CG V  A  +F      + V+W  + + + R   + E    +  M  +G+ P     
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVP-NLILENALTDMYAACGEMGFALEIFGNIK 278
           V+ +  C+  KDL  G+  H  + E +++  ++IL  AL  MYA C ++           
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDL----------- 110

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
                               ++AR+ FD+M ++  V W A+I GY R    R AL ++++
Sbjct: 111 --------------------ELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQD 150

Query: 339 MQTSN---IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
           M + +   ++PD  T  S L AC+ +G +  G  ++     +   +D  V NALI+MY K
Sbjct: 151 MVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSK 210

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG +E A++VF  +  +D   W  MI G A  G   ++L++F +M      P+ VT++G+
Sbjct: 211 CGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGL 270

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR-AGHLNEALEVIKNMPMK 514
           L+ACT+   +++GR     +  +HG E +      ++++  + +  L EA +V + +  +
Sbjct: 271 LTACTNLEDLEQGRAIHRKVK-EHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTR 329

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQI-LELDPDNEAVYVLLCNIYAAC 564
            + I W  L+ A   +  A+ A    KQ+ LE    NE   + L N+ +AC
Sbjct: 330 -DVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE---ITLSNVLSAC 376



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 152/355 (42%), Gaps = 71/355 (20%)

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY  CG +  AL +F  I++ + +SWT IV  +   G                       
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGH---------------------- 38

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI-DKNK 378
                    +REAL  +R M    +RPD    V  +  C++   L+ G+ +   I +   
Sbjct: 39  ---------YREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETQL 89

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           ++ DI +G ALI MY +C D+E A++ F EM +K   TW A+I G + NG    +L ++ 
Sbjct: 90  LEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQ 149

Query: 439 QMLRAS---IIPDEVTYVGVLSACTHTGMVDEGRE---------YFADMTIQHGI----- 481
            M+  S   + PD +T+   L AC+  G + +GRE         Y +D  +Q+ +     
Sbjct: 150 DMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYS 209

Query: 482 ----------------EPNEAHYGCMVDLLGRAGHLNEALEVIKNM---PMKPNSIVWGA 522
                             +   +  M+    + G   +ALE+ + M     KPN + +  
Sbjct: 210 KCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIG 269

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVY-VLLCNIYAACNRWDNFRELRQM 576
           LL AC    D E      +++ E   +++ V   +L N+Y  C+   +  E RQ+
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCS--SSLEEARQV 322


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/753 (36%), Positives = 424/753 (56%), Gaps = 65/753 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCC------------------------------SEK 62
           K IH++ IK GL     + N L+ F                                ++ 
Sbjct: 33  KSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKG 92

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A +VF ++P P    W  MI GY+++   +N + ++ +M+  DV P  +T   +L
Sbjct: 93  GRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVL 152

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE----------------- 165
                   +  G+++H  V+K G  S + V N+L++ Y   G+                 
Sbjct: 153 ASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTS 212

Query: 166 --------------VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM-ERK 210
                         VD+A+  F+   + DVV+WNAM SGY +     E   +F +M    
Sbjct: 213 SWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDS 272

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
              P   T+   LSACA L++L +GK+ H ++   +      + NAL  MY+  G +  A
Sbjct: 273 SSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIA 332

Query: 271 LEIFGN--IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            +I     I N DVI++TA++ GY+  G ++ AR+ FD +  RD V WTAMI GY++   
Sbjct: 333 QKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGF 392

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
            ++A+ LFR M     +P+ +T+ ++L+  ++L +L+ G  +     ++   + + V NA
Sbjct: 393 NQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNA 452

Query: 389 LIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           LI MY K G +  A+ VF  +  ++D  TWT+MI+ LA +G G+++L +F +ML   I P
Sbjct: 453 LITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKP 512

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D +TYVGVLSACTH G+V++GR Y+  M   H I P  +HY CM+DL GRAG L EA   
Sbjct: 513 DHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAF 572

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           I+NMP++P+ I WG+LL +C+VH++ E+AE+AA+++L ++P+N   Y  L N+Y+AC +W
Sbjct: 573 IENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQW 632

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           +N   +R+ + D+G+KK  G S +++   VH F   D  HPQ   IY  + ++  ++K +
Sbjct: 633 ENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKM 692

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           G++PD   V  D+ EE KE+ +  HSEKLA+AFGLI +    T+RI+KNLR+C DCH   
Sbjct: 693 GFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAI 752

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           K +S +  RE+IVRD TRFHHFK+G CSC+DYW
Sbjct: 753 KFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 143/498 (28%), Positives = 235/498 (47%), Gaps = 72/498 (14%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK +H  ++K G    VF+ N L++ Y   G +  A  +FD      V +WN + SGY +
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 194 -------------------------------VKQFDETRKLFGEMERKGVLPTSVTIVLV 222
                                          + QF+    +F EM    V PT  T+  V
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L++CA ++ L +G++ H +V +  +   + + N+L +MYA  G+   A  +F  +K K  
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QT 341
            SW  +++ ++  G VD+A+  F+QM ERD V W AMI GY +    REAL +F +M   
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMD 271

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
           S+ +PD+FT+ S L+ACANL  L+LG+ +  +I + +      VGNALI MY K G VE 
Sbjct: 272 SSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEI 331

Query: 402 AQ---------------------------------RVFREMLRKDKFTWTAMIVGLAING 428
           AQ                                 R+F  +  +D   WTAMIVG   NG
Sbjct: 332 AQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNG 391

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
               ++++F  M++    P+  T   +LS  +    +D GR+  A  T + G   + +  
Sbjct: 392 FNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASAT-RSGNASSVSVS 450

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--L 546
             ++ +  ++G +N+A  V   +  K ++I W +++ A   H   E A    +++LE  +
Sbjct: 451 NALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGI 510

Query: 547 DPDNEAVYVLLCNIYAAC 564
            PD    ++    + +AC
Sbjct: 511 KPD----HITYVGVLSAC 524



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 171/335 (51%), Gaps = 34/335 (10%)

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L    K KD   GK  H  + +  +   + L N L + YA  G +  A  +F  +  K V
Sbjct: 20  LQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSV 79

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
            SW  I++GY   G+++ A + F++MPE D V WTAMI GY ++ +F  A+ +FREM + 
Sbjct: 80  FSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSD 139

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD---- 398
           ++ P +FT+ ++L +CA +  L +G  V +++ K+ + + I V N+L++MY K GD    
Sbjct: 140 DVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTA 199

Query: 399 ---------------------------VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
                                      V+ AQ  F +M+ +D  +W AMI G   +G   
Sbjct: 200 KIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDR 259

Query: 432 KSLDMFSQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           ++LD+FS+ML  +S  PD+ T    LSAC +   +  G++  A + I+   +   A    
Sbjct: 260 EALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHI-IRTEFDTFGAVGNA 318

Query: 491 MVDLLGRAGHLNEALEVI-KNMPMKPNSIVWGALL 524
           ++ +  ++G +  A ++I ++M    + I + ALL
Sbjct: 319 LISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/589 (41%), Positives = 379/589 (64%), Gaps = 4/589 (0%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLC---GEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           +++H  +LK G        + L++ +C     G +  AR +FD  ++ +   WN M  GY
Sbjct: 35  RQIHGQMLKTGLILDEIPASKLLA-FCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGY 93

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
              K+ +E   L+  M    V   + T   +L AC+ +   +  ++ H ++ +      +
Sbjct: 94  SNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEI 153

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
              N+L ++Y+  G++  A  +F  +  +D +SW +++ GY   G+++MA + F+ MPER
Sbjct: 154 YTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPER 213

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           + + WT+MI G +   + +EAL LF  MQT+ I+ D   +VS L ACA+LG L+ G+W+ 
Sbjct: 214 NIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIH 273

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            YI K++++ D  +G  LIDMY KCGD+E+A  VFR+M  K    WTAMI G AI+G G 
Sbjct: 274 AYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGR 333

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L+ F +M  A + P+++T+ G+L+AC+H G+V E +  F  M   HG +P+  HYGCM
Sbjct: 334 EALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCM 393

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAG L EA E+I+NMP+KPN+ +WGALL AC +H + E+ +   K ++++DP + 
Sbjct: 394 VDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHG 453

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             Y+ L +I+AA   W+    +R+ + ++G+ K PGCS+I +NG  HEF+AGD+SHPQ K
Sbjct: 454 GRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIK 513

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           EI   L+++   L+  GY P + ++ LD+ +++KE A++ HSEKLA+ FGLIS+ PG+TI
Sbjct: 514 EIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTI 573

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RIVKNLR+C DCH + KL+S VY RE+++RD+TRFH FK G+C+C DYW
Sbjct: 574 RIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 227/458 (49%), Gaps = 68/458 (14%)

Query: 8   SPPSTLTQET---PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKG 63
           +P S L+ E+     +  ++ C +M +L+QIH Q +K GL+ +    +KL+ FC S   G
Sbjct: 7   TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSG 66

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            + YA  VF +I RP+  +WNTMI+GYS     +  +L+Y  ML   V  + YTFPFLLK
Sbjct: 67  SLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLK 126

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
             +   A E  +++H H++K GF S ++  N+L++ Y   G++  AR +FD   + D V+
Sbjct: 127 ACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVS 186

Query: 184 WNAMFSGYKRVKQFD-------------------------------ETRKLFGEMERKGV 212
           WN+M  GY +  + +                               E   LF  M+  G+
Sbjct: 187 WNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGI 246

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
              +V +V  L ACA L  LD GK  H Y+K+ +I  + IL   L DMYA CG++  A+E
Sbjct: 247 KLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIE 306

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  ++ K V  WTA+++GY   G                               R REA
Sbjct: 307 VFRKMEEKGVSVWTAMISGYAIHG-------------------------------RGREA 335

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFVGNALID 391
           L  F +MQT+ + P++ T   ILTAC++ G +   + +   +++ +  K  I     ++D
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 395

Query: 392 MYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
           +  + G +++A+ +   M ++ +   W A++    I+G
Sbjct: 396 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/709 (37%), Positives = 400/709 (56%), Gaps = 35/709 (4%)

Query: 15  QETPLISPIETCESMH---QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKV 71
            E  L S I  C  +    Q ++IH   IKLG  ++    N LV    ++ G ++ A  V
Sbjct: 110 NEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMY-AKVGILEDASSV 168

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           F +I +P +  WN +I G    + H   + +  +M KS + P+ +T    LK        
Sbjct: 169 FDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALR 228

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           E G++LH  ++K    S  F+   LI  Y  C  +D AR +F +  + D++ WNA+ SG+
Sbjct: 229 ELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGH 288

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            + ++ +E   LF  M  +G+     T+  VL + A L+   + ++ H    +     + 
Sbjct: 289 SQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDN 348

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + N+L D Y  CG                                V+ A + F++ P  
Sbjct: 349 YVVNSLIDTYGKCG-------------------------------HVEDATRVFEESPIV 377

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D VL+T+++  Y +  +  EAL L+ EMQ   I+PD F   S+L ACA+L A E G+ V 
Sbjct: 378 DLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVH 437

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            +I K    +DIF GN+L++MY KCG +E A   F  +  +   +W+AMI GLA +G+G 
Sbjct: 438 VHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGK 497

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L +F QML+  + P+ +T V VL AC H G+V E + YF  M I  GIEP + HY CM
Sbjct: 498 EALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACM 557

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           +DLLGRAG L  A+E++  MP + N++VWGALLGA R+H++ ++ E AA+ +L L+P+  
Sbjct: 558 IDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKS 617

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             +VLL NIYA+   WD    +R+++ D  +KK PG S +E+   V+ F+ GD+SH ++ 
Sbjct: 618 GTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRST 677

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           EIY KLDE++  LK  GY+P +     DV   +KE+ +Y HSEKLA+AFGLI++ PG  I
Sbjct: 678 EIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPI 737

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+ KNLR+C DCH + K +S +  RE+IVRD  RFHHF+ GSCSC +YW
Sbjct: 738 RVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 219/507 (43%), Gaps = 67/507 (13%)

Query: 111 VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170
           ++ + + FP +LK  T    +  GK++H  V+  GFDS  FV N+L+  Y  CG    AR
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDAR 65

Query: 171 GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK 230
            +FD      VV+WNA+FS Y       E   LF +M   G+ P   ++  +++ C  L+
Sbjct: 66  SLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLE 125

Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
           D   G++ H Y+ +     +    NAL DMYA  G +  A  +F  I   D++SW AI+ 
Sbjct: 126 DSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIA 185

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
           G +         +Y  +                        AL L REM  S + P+ FT
Sbjct: 186 GCV-------LHEYHHR------------------------ALELLREMNKSGMCPNMFT 214

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           + S L ACA +   ELG  + + + K  + +D F+G  LIDMY KC  ++ A+ VF+ M 
Sbjct: 215 LSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMP 274

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            +D   W A+I G + N   +++  +F  M    I  ++ T   VL +          R+
Sbjct: 275 ERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQ 334

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP------------------ 512
             A ++++ G E +      ++D  G+ GH+ +A  V +  P                  
Sbjct: 335 IHA-LSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDG 393

Query: 513 ----------------MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV- 555
                           +KP+S V  +LL AC      E  +     IL+    ++     
Sbjct: 394 QGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGN 453

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGI 582
            L N+YA C   ++       I  RGI
Sbjct: 454 SLVNMYAKCGSIEDASCAFSRIPVRGI 480



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 145/307 (47%), Gaps = 13/307 (4%)

Query: 14  TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           T  + ++  I   ++ +  +QIH+ ++K G   +  V N L+     + G ++ A +VF 
Sbjct: 314 TTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLID-TYGKCGHVEDATRVFE 372

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           + P   + L+ +++  Y++    +  + +YL+M    ++PD++    LL       A E 
Sbjct: 373 ESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQ 432

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK++H H+LKFGF S +F  N+L++ Y  CG ++ A   F       +V+W+AM  G  +
Sbjct: 433 GKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQ 492

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV----P 249
                E  +LF +M + GV P  +T+V VL AC       +   A  Y    KI+    P
Sbjct: 493 HGYGKEALQLFKQMLKVGVPPNHITLVSVLCAC---NHAGLVAEAKHYFNSMKILFGIEP 549

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQM 308
                  + D+    G++  A+E+   +    + + W A++        +D+  Q  + +
Sbjct: 550 MQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEML 609

Query: 309 ----PER 311
               PE+
Sbjct: 610 LALEPEK 616



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 2/193 (1%)

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M    I+ +EF   S+L AC     L LG+ V   +      +D FV N+L+ +Y KCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
              A+ +F  +  +   +W A+      +    +++ +F  M+ + I P+E +   +++ 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           CT      +GR+    + I+ G + +      +VD+  + G L +A  V   +  KP+ +
Sbjct: 121 CTGLEDSVQGRKIHGYL-IKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIV 178

Query: 519 VWGALLGACRVHR 531
            W A++  C +H 
Sbjct: 179 SWNAIIAGCVLHE 191


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/471 (50%), Positives = 327/471 (69%)

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++I  NA+ D Y  CGE+  A E+F ++++K+V SW  +V+G    G ++ AR+ F++M 
Sbjct: 195 DVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMK 254

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           E++ + W+AMIDGY++   ++EAL +F  MQ   IRP +F + S+L ACANLGAL+ G W
Sbjct: 255 EKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRW 314

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           +  Y++ N    D  +G AL+DMY KCG ++ A  VF +M +K+ FTW AMI GL ++G 
Sbjct: 315 IHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGR 374

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
            + ++++F +M +    P+ +T +GVLSAC H+GMVDEG   F  M   +GIEP   HYG
Sbjct: 375 AEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYG 434

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           C+VDLLGRAG L EA EV+ +MPM+P++ VWGALLGACR H D E+ E   K +LEL+P 
Sbjct: 435 CVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQ 494

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           N   Y LL NIYA   RWD+   +R+++ +RG+K + G SMI+ +GVVHEF  GD SHPQ
Sbjct: 495 NSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQ 554

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
            K IYL L  M   LK  G+ P+ S+V  D+ EE+KE  +  HSEKLA+AFGLI++ PG 
Sbjct: 555 MKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGT 614

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           TI +VKNLRMC DCH   KL+S VYDRE+IVRD+ R+HHFK G+CSCKD+W
Sbjct: 615 TIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 211/490 (43%), Gaps = 99/490 (20%)

Query: 11  STLTQETPL-ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT-FCCSEKGDMKYA 68
           S L+Q+T L +   ++  S+H LKQ+H+  ++ G   +  V   LV  +      ++ +A
Sbjct: 24  SQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFA 83

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            KVF  +P P+V ++N +IKG  + +     +  Y  M+ +  RP+ +T+P L K  T  
Sbjct: 84  LKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAA 143

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQ-------------------------------NALI 157
            A E G ++H HV+K G    V ++                               NA+I
Sbjct: 144 EAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMI 203

Query: 158 STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE----------- 206
             Y  CGEV+ A+ +F      +V +WN M SG  +    +E R+LF E           
Sbjct: 204 DGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSA 263

Query: 207 --------------------MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
                               M+R+ + P    +  VL+ACA L  LD G+  H YV    
Sbjct: 264 MIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNS 323

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              + +L  AL DMYA CG +  A ++F  ++ K+V +W A++ G    G          
Sbjct: 324 NSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHG---------- 373

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
                                R  +A+ LF +MQ    RP+  T++ +L+ACA+ G ++ 
Sbjct: 374 ---------------------RAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDE 412

Query: 367 GEWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGL 424
           G  +   +++   ++  +     ++D+  + G + +A+ V   M +      W A++   
Sbjct: 413 GLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLG-- 470

Query: 425 AINGHGDKSL 434
           A   HGD  L
Sbjct: 471 ACRKHGDVEL 480


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/688 (39%), Positives = 386/688 (56%), Gaps = 32/688 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQ+H   IK  +  N  V N L+     E G ++ A  VF  + + S   WN MI GY  
Sbjct: 48  KQVHDCIIKSRMEQNAHVMNNLLHVYI-ECGRLQEARCVFDALVKKSGASWNAMIAGYVE 106

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               ++ + ++ +M    V+P+  T+  +LK      A+++GKE+H  +   G +S V V
Sbjct: 107 HKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRV 166

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             AL+  Y  CG ++ AR IFD     D+++W  M   Y +     E  +L  +ME++G 
Sbjct: 167 GTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGF 226

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P ++T V +L+ACA    L   KR HR+                         +   LE
Sbjct: 227 KPNAITYVSILNACASEGALKWVKRVHRHA------------------------LDAGLE 262

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +       DV   TA+V  Y   G +D AR  FD+M  RD V W  MI  +    R  EA
Sbjct: 263 L-------DVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEA 315

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
             LF +MQT   +PD    +SIL ACA+ GALE  + +  +   + ++ D+ VG AL+ M
Sbjct: 316 YDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHM 375

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y K G ++ A+ VF  M  ++  +W AMI GLA +G G  +L++F +M    + PD VT+
Sbjct: 376 YSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTF 435

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           V VLSAC+H G+VDEGR  +  MT  +GIEP+ +H  CMVDLLGRAG L EA   I NM 
Sbjct: 436 VAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMA 495

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
           + P+   WGALLG+CR + + E+ E+ AK+ L+LDP N A YVLL NIYA   +WD    
Sbjct: 496 VDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSW 555

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R M+ +RGI+K PG S IE++  +H+F+  D SHP+ KEI    D++   +K  GY+PD
Sbjct: 556 VRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPD 615

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
              V  +   +DKE  +  HSEKLA+ +GL+ + PG  IR+ KNLR+C DCH   KL+S 
Sbjct: 616 TRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISK 675

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           V  RE+IVRD  RFHHFK G CSC DYW
Sbjct: 676 VEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 132/274 (48%), Gaps = 13/274 (4%)

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
           N   EA+ +        +  D F  V +L  C     L   + V   I K++++ +  V 
Sbjct: 7   NTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVM 66

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           N L+ +Y +CG +++A+ VF  +++K   +W AMI G   + H + ++ +F +M    + 
Sbjct: 67  NNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQ 126

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-CMVDLLGRAGHLNEAL 505
           P+  TY+ +L AC     +  G+E  A   I+HG   ++   G  ++ + G+ G +NEA 
Sbjct: 127 PNAGTYMIILKACASLSALKWGKEVHA--CIRHGGLESDVRVGTALLRMYGKCGSINEAR 184

Query: 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD----NEAVYVLLCNIY 561
            +  N+ M  + I W  ++GA   +  +   + A + +L+++ +    N   YV + N  
Sbjct: 185 RIFDNL-MNHDIISWTVMIGA---YAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNAC 240

Query: 562 AACNRWDNFRELRQMILDRGIK--KTPGCSMIEM 593
           A+       + + +  LD G++     G ++++M
Sbjct: 241 ASEGALKWVKRVHRHALDAGLELDVRVGTALVQM 274


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/595 (42%), Positives = 366/595 (61%), Gaps = 12/595 (2%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYC-LCGEVDMARGIFDVSYKDDVVTWNAM-----F 188
           K++H  ++  G        N L+     +   +  A  +FD   + D+  +N +     F
Sbjct: 18  KQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFLYNTIIKVLAF 77

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           S       F + R L  E ER  ++P   +       C     +  G++   +  +  + 
Sbjct: 78  STTSSADSFTKFRSLIRE-ER--LVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLE 134

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            NL + NAL  MY     +  A ++F    N+D+ SW  +++GY   G++D ARQ FD+M
Sbjct: 135 NNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEM 194

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
           PE+D V WT MI G L+V  F EAL +F  M    + P+E+T+ S L ACANL AL+ G 
Sbjct: 195 PEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGR 254

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE--MLRKDKFTWTAMIVGLAI 426
           W+  YI KN ++ +  +   LIDMY KCG++E A ++F     L++  + W AMI G A+
Sbjct: 255 WMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAV 314

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G   +++++F QM    + P++VT+V +L+AC+H   V+EGR YF  M   + ++P   
Sbjct: 315 HGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELE 374

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HYGC+VDLLGRAG L EA E+I +M + P+  +WGALL AC++H+DAEM E   K + EL
Sbjct: 375 HYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKEL 434

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           DP++   +VLL NIY+    W+  R LR+ I + G KKTPGCS IE+NG+ H+F+ GD+S
Sbjct: 435 DPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRS 494

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE-EDKERAVYQHSEKLAMAFGLISS 665
           HPQTK++YL LDEM + LK  GY+P+  EV LD+ + ED+E A+ +HSEKLA+AFGL+++
Sbjct: 495 HPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNT 554

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            P   IRIVKNLR+C DCH   K +S VYDRE+IVRD+ R+HHFK G+CSC DYW
Sbjct: 555 TPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 208/443 (46%), Gaps = 70/443 (15%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           + +C+S  Q+KQ+H++ I  GL+ +P   NKL+    S    + YA  VF   P+P + L
Sbjct: 8   LSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFL 67

Query: 83  WNTMIK--GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
           +NT+IK   +S   S  +       + +  + P+ Y+F F  KG    + V  G+++  H
Sbjct: 68  YNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVH 127

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
            +K G ++++FV NALI  Y     V  AR +FD S   D+ +WN M SGY R+ + DE 
Sbjct: 128 AIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEA 187

Query: 201 RKLFGEMER-------------------------------KGVLPTSVTIVLVLSACAKL 229
           R+LF EM                                 KG+ P   T+   L+ACA L
Sbjct: 188 RQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANL 247

Query: 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN---IKNKDVISWT 286
             LD G+  H Y+K+  I  N  L   L DMYA CGE+ FA ++F +   +K K V  W 
Sbjct: 248 VALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRK-VWPWN 306

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
           A++ G+   G+                                +EA+ +F +M+   + P
Sbjct: 307 AMIGGFAVHGKS-------------------------------KEAIEVFEQMKIEKVSP 335

Query: 347 DEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           ++ T V++L AC++   +E G  + ++     +VK ++     L+D+  + G +++A+ +
Sbjct: 336 NKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEI 395

Query: 406 FREM-LRKDKFTWTAMIVGLAIN 427
              M L  D   W A++    I+
Sbjct: 396 ISSMHLTPDVAIWGALLSACKIH 418


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/688 (37%), Positives = 389/688 (56%), Gaps = 32/688 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           ++IH   +K+GL  +    N LV    S+ G+++ A  VF+ I  P V  WN +I G   
Sbjct: 203 RKIHGLMLKMGLDLDQFSANALVDMY-SKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVL 261

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            D +   +++  +M  S  RP+ +T    LK        E G++LH  ++K    S +F 
Sbjct: 262 HDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFA 321

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
              L+  Y  C  +D AR  +D   K D++ WNA+ SGY +     +   LF +M  + +
Sbjct: 322 AVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDI 381

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
                T+  VL + A L+ + V K+ H    +  I  +  + N+L D Y  C        
Sbjct: 382 DFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCN------- 434

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
                                    +D A + F++    D V +T+MI  Y +     EA
Sbjct: 435 ------------------------HIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEA 470

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L L+ +MQ ++I+PD F   S+L ACANL A E G+ +  +  K     DIF  N+L++M
Sbjct: 471 LKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNM 530

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG +E A R F E+  +   +W+AMI G A +GHG ++L +F+QMLR  + P+ +T 
Sbjct: 531 YAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITL 590

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           V VL AC H G+V+EG++YF  M +  GI+P + HY CM+DLLGR+G LNEA+E++ ++P
Sbjct: 591 VSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIP 650

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            + +  VWGALLGA R+H++ E+ + AAK + +L+P+    +VLL NIYA+   W+N  +
Sbjct: 651 FEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAK 710

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R+ + D  +KK PG S IE+   V+ F+ GD+SH ++ EIY KLD++   L   GY   
Sbjct: 711 VRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSI 770

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
           +     +V + +KE+ +Y HSEKLA+AFGLI++ PG  IR+ KNLR+CVDCH   K V  
Sbjct: 771 VEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCK 830

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  RE+IVRD  RFHHFK GSCSC DYW
Sbjct: 831 IVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 153/570 (26%), Positives = 280/570 (49%), Gaps = 41/570 (7%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           ++H+  IK G   +P+++N LVT   S+     YA K+  +     V  W++++ GY + 
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLY-SKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
              +  +L++ +M    V+ + +TFP +LK  +    +  G+++H   +  GF+S  FV 
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N L+  Y  CG +D +R +F    + +VV+WNA+FS Y + +   E   LF EM R G++
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P   +I ++L+ACA L++ D+G++ H  + +  +  +    NAL DMY+  GE+  A+ +
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F +I + DV+SW AI+ G +     D+                               AL
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDL-------------------------------AL 269

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            L  EM+ S  RP+ FT+ S L ACA +G  ELG  + + + K    +D+F    L+DMY
Sbjct: 270 MLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMY 329

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KC  ++ A+R +  M +KD   W A+I G +  G    ++ +FS+M    I  ++ T  
Sbjct: 330 SKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLS 389

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            VL +      +   ++    ++I+ GI  +      ++D  G+  H++EA ++ +    
Sbjct: 390 TVLKSVASLQAIKVCKQIHT-ISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTW 448

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELD--PDNEAVYVLLCNIYAACNRWDNFR 571
           + + + + +++ A   + D E A     Q+ + D  PD      +  ++  AC     + 
Sbjct: 449 E-DLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDP----FICSSLLNACANLSAYE 503

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           + +Q+ +   IK    C +   N +V+ + 
Sbjct: 504 QGKQLHV-HAIKFGFMCDIFASNSLVNMYA 532



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 104/236 (44%), Gaps = 10/236 (4%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           + L++      +  Q KQ+H   IK G + +    N LV    ++ G ++ A + F +IP
Sbjct: 490 SSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNM-YAKCGSIEDADRAFSEIP 548

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
              +  W+ MI GY++    K  + ++  ML+  V P++ T   +L        V  GK+
Sbjct: 549 NRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQ 608

Query: 137 LHCHV-LKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSG---Y 191
               + + FG   +      +I      G+++ A  + + + ++ D   W A+      +
Sbjct: 609 YFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIH 668

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
           K ++   +  K+  ++E +     S T VL+ +  A     +   +  +++K+ K+
Sbjct: 669 KNIELGQKAAKMLFDLEPE----KSGTHVLLANIYASAGMWENVAKVRKFMKDSKV 720


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/709 (37%), Positives = 407/709 (57%), Gaps = 44/709 (6%)

Query: 23  IETCESMHQLKQIHSQTIKLG-LLTNPTVQNKLVTFCCSEKGDMKYACKVF--------R 73
           ++ C S+  LK IHS     G LL  P    +L+    S+ GD+  A  +F         
Sbjct: 32  LQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILY-SKLGDLHSARTLFDHRHHHHHG 90

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
               P+  L NTM++ Y+        + +Y+ M +  V  +N+T+PF+LK    ++   F
Sbjct: 91  HTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVF 150

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+ +H  V++ GF S +FV+ AL+  Y  CGE+  A  +FD     DVV W AM + Y++
Sbjct: 151 GEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQ 210

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
            ++  +   LF +M+ +G L   +T + V SA  +L D  +    H Y      + ++ +
Sbjct: 211 AERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSV 270

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            N++  MYA CG                                V+ AR  FD+M ER+ 
Sbjct: 271 GNSIVGMYAKCG-------------------------------NVERARLVFDRMEERNG 299

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           + W +M+ GY +  R  +AL+LF +MQ S   P+  T + +++AC+ LG+  LG  +  +
Sbjct: 300 ISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNF 359

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR--EMLRKDKFTWTAMIVGLAINGHGD 431
           +  +K+  D  + NA++DMY KCGD++ A  +F   E+  +D  +W  +I G  ++GHG 
Sbjct: 360 VISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK 419

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L++FS+M    + P+++T+  +LSAC+H G++DEGR+ FADMT +  + P   HY CM
Sbjct: 420 EALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYACM 478

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VD+LGRAG LNEA  +IK +P +P+  VWGALL ACR+H + E+ E+AA  + +L+P++ 
Sbjct: 479 VDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHT 538

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVL+ NIYAA N+W     +RQ +  RG+KK    S+IE    VH F   D+S P  +
Sbjct: 539 GYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYR 598

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           E+Y K++ +  ++K VGY+PD+S V  DV  EDKE  +  HSEKLA+AFG++    G+ I
Sbjct: 599 EVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPI 658

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++ KNLR+C DCH   K +S +Y R++IVRD  RFHHF+ G CSC DYW
Sbjct: 659 QVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/709 (37%), Positives = 395/709 (55%), Gaps = 49/709 (6%)

Query: 60  SEKGDMKYACKVFRKIP---RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
           S  G+   A ++F   P   R +VC +N MI GYS  +     + ++ D+L++  RPDN+
Sbjct: 92  SSAGNSNLAREIFFATPLGIRDTVC-YNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNF 150

Query: 117 TFPFLLKGFTRDIAVEFG-KELHCHVLKFGFDSSVFVQNALISTYCLC------------ 163
           TF  +L      +  E   +++HC V+K G      V NAL+S +  C            
Sbjct: 151 TFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLM 210

Query: 164 ----------------------------GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
                                       GE+D AR   D   +  VV WNAM SGY    
Sbjct: 211 AAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHG 270

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL---- 251
            F E  ++F +M   G+     T   VLSACA       GK+ H Y+   +  P+L    
Sbjct: 271 FFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSL 330

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + NAL  +Y  CG++  A ++F  +  KD++SW AI++GY+N G++D A+ +F++MPER
Sbjct: 331 SVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPER 390

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           + + WT MI G  +     E+L LF  M++    P ++     + ACA L AL  G  + 
Sbjct: 391 NLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLH 450

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
             + +    + +  GNALI MY KCG VE A  +F  M   D  +W AMI  L  +GHG 
Sbjct: 451 AQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGA 510

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L++F  ML+  I+PD +T++ VLS C+H G+V+EG  YF  M+  +GI P E HY  M
Sbjct: 511 QALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARM 570

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           +DLL RAG  +EA ++I+ MP++P   +W ALL  CR+H + ++   AA+++ EL P ++
Sbjct: 571 IDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHD 630

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL N+YA   RWD+  ++R+++ D+G+KK PGCS IE+   VH F+  D  HP+ +
Sbjct: 631 GTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQ 690

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            +Y  L+E+   ++ +GY+PD   V  D+  E KE  +  HSEKLA+ FGL+    G T+
Sbjct: 691 AVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATV 750

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+ KNLR+C DCH   K +S V +RE++VRD  RFHHFK+G CSC +YW
Sbjct: 751 RVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 214/487 (43%), Gaps = 82/487 (16%)

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT----- 183
           ++    + +H H++  GF    ++ N LI  YC   ++  A  +FD   + D+V      
Sbjct: 29  MSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLI 88

Query: 184 ----------------------------WNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
                                       +NAM +GY          +LF ++ R G  P 
Sbjct: 89  AAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPD 148

Query: 216 SVTIVLVLSACAKL-KDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGE------- 266
           + T   VL A A + +D    ++ H   VK        +L NAL  ++  C         
Sbjct: 149 NFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVL-NALLSVFVKCASSPLVSSS 207

Query: 267 --MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
             M  A ++F  +  +D +SWT ++ GY+  G++D ARQ+ D M E+  V W AMI GY+
Sbjct: 208 SLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYV 267

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN--- 381
               F EAL +FR+M    I+ DEFT  S+L+ACAN G    G+ V  YI + + +    
Sbjct: 268 HHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLD 327

Query: 382 -DIFVGNALIDMYCKCGDVEKAQRVFREMLRKD--------------------------- 413
             + V NAL  +Y KCG V++A++VF +M  KD                           
Sbjct: 328 FSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEM 387

Query: 414 ----KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
                 TWT MI GLA NG G++SL +F++M      P +  + G + AC     +  GR
Sbjct: 388 PERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGR 447

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529
           +  A + ++ G + + +    ++ +  + G +  A  +   MP   +S+ W A++ A   
Sbjct: 448 QLHAQL-VRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYL-DSVSWNAMIAALGQ 505

Query: 530 HRDAEMA 536
           H     A
Sbjct: 506 HGHGAQA 512



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H+Q ++LG  ++ +  N L+T   ++ G ++ A  +F  +P      WN MI    +
Sbjct: 447 RQLHAQLVRLGFDSSLSAGNALITM-YAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQ 505

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
                  + ++  MLK D+ PD  TF  +L   +    VE G
Sbjct: 506 HGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEG 547


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/620 (40%), Positives = 372/620 (60%), Gaps = 35/620 (5%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  +      S+  V   LIS+ C    +D A  IF      ++  +NA+  G     
Sbjct: 58  QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           +F+ +   F  M R  + P  +T+  VL + A L D+ +G+  H  V +  +  +  +  
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRV 177

Query: 256 ALTDMYAACGEMGFALEIFGN-----------------------------------IKNK 280
           +L DMY   GE+GF L++F                                     +  +
Sbjct: 178 SLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPER 237

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +  SW +++ G++  G +D AR+ F QMPE++ V WT MI+G+ +     +AL++F  M 
Sbjct: 238 NAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRML 297

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
              +RP++ T+VS L AC  +GAL++GE +  Y+  N  + +  +G AL+DMY KCG+++
Sbjct: 298 EEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIK 357

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
            A RVF E   KD  TW+ MI G AI+G  D++L  F +M  A I PDEV ++ +L+AC+
Sbjct: 358 SASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACS 417

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           H+G VD+G  +F  M + + IEP   HY  +VDLLGRAG L+EAL  I++MP+ P+ ++W
Sbjct: 418 HSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIW 477

Query: 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
           GAL  ACR H++ EMAE+ A+++L+L+P +   YV L N+YAA  RW++   +R ++ +R
Sbjct: 478 GALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNR 537

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
           G++K PG S IE+ G VH FVAGD +H + +EI LKL+E+T+  K  GYMP+ + V  ++
Sbjct: 538 GVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNI 597

Query: 641 GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIV 700
            EE+KE A+  HSEKLA+AFGLIS+ PG TIRIVKNLR+C DCH M K  S +  RE+I+
Sbjct: 598 EEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIIL 657

Query: 701 RDKTRFHHFKHGSCSCKDYW 720
           RD  RFHHFK G+CSC DYW
Sbjct: 658 RDIKRFHHFKDGTCSCGDYW 677



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 204/476 (42%), Gaps = 100/476 (21%)

Query: 14  TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           + ET  I  I    ++ QL QIH+Q     L +N  V  +L++  CS K  + YA  +FR
Sbjct: 38  SPETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLK-SLDYALSIFR 96

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
               P++ ++N +I+G +     +  V  ++ ML+  +RPD  T PF+LK     + V  
Sbjct: 97  CFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGL 156

Query: 134 GKELHCHVLKFG--FDS---------------------------------SVFVQNALIS 158
           G+ LH  V+K G  FDS                                 S+ + N LI+
Sbjct: 157 GRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLIN 216

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK-------- 210
             C  G++  A  +F+   + +  +WN++ +G+ R    D  R+LF +M  K        
Sbjct: 217 GCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTM 276

Query: 211 -----------------------GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
                                  GV P  +T+V  L AC K+  L VG+R H Y+     
Sbjct: 277 INGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGF 336

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             N  +  AL DMYA CG +  A  +F   K KD+++W+ ++ G+   G        FDQ
Sbjct: 337 QLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHG-------CFDQ 389

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                   AL  F +M+++ I PDE   ++ILTAC++ G ++ G
Sbjct: 390 ------------------------ALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQG 425

Query: 368 -EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
             + ++      ++  +     ++D+  + G +++A    + M +  D   W A+ 
Sbjct: 426 LNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALF 481



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 118/241 (48%), Gaps = 2/241 (0%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD+  A ++F ++P  +V  W TMI G+S+   H+  + ++  ML+  VRP++ T    L
Sbjct: 253 GDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSAL 312

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
              T+  A++ G+ +H ++   GF  +  +  AL+  Y  CG +  A  +F  +   D++
Sbjct: 313 LACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLL 372

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           TW+ M  G+     FD+  + F +M+  G+ P  V  + +L+AC+   ++D G      +
Sbjct: 373 TWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESM 432

Query: 243 K-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDM 300
           + +  I P +     + D+    G +  AL    ++  N D + W A+         ++M
Sbjct: 433 RLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEM 492

Query: 301 A 301
           A
Sbjct: 493 A 493


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/615 (41%), Positives = 386/615 (62%), Gaps = 1/615 (0%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           M  LK +H+Q I  GL        KL++FC   + GD++YA ++F +IP+P+  ++N++I
Sbjct: 1   MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           +GYS  D   + VL++  M+ S + P+ +T PF+LK      A      +H   +K G  
Sbjct: 61  RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           S VFVQNALI+ Y +CG +  AR +FD      +V+WN+M  GY  +  + E   LF +M
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKM 180

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
              G+ P   T V +LS C++ +DLD+G+  H  ++   +  ++I+ NAL DMYA CG +
Sbjct: 181 REWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNL 240

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  IF   + K+V+SWT++++ Y   G +++ARQ FDQMP ++ V W +MI  YLR  
Sbjct: 241 HSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREG 300

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
           ++REAL LF +M+ S + PDE T+VSIL AC+ LG L +G+ +  YI  NK    + + N
Sbjct: 301 QYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYN 360

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           +LIDMY KCG V  A  +F EM  K+  +W  +I  LA++G G +++ +F +M     +P
Sbjct: 361 SLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLP 420

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           DE+T  G+LSAC+H+G+VD G  YF  M + + +     HY CMVDLLGR G L EA+E+
Sbjct: 421 DEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIEL 480

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           I  MPMKP+ +VWGALLGACR+H + E+ +   KQ+LEL+P +  +YVL+ NIY    RW
Sbjct: 481 IGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRW 540

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           ++ +++R++++DRGIKK    S IE++G ++EF+  DK H  +  IY  LD++T  L+  
Sbjct: 541 EDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHLRSA 600

Query: 628 GYMPDISEVFLDVGE 642
           GY+ +IS VF +  E
Sbjct: 601 GYLCNISSVFFEAEE 615


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/616 (42%), Positives = 379/616 (61%), Gaps = 13/616 (2%)

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           P + TF  LLK   +  ++   K++H  V+  G   +  +   LI +Y  C  +  AR +
Sbjct: 53  PSHSTFVQLLK---KRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIV 109

Query: 173 FD-VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV---TIVLVLSACAK 228
           FD        + WN M   Y +     E+  LF +M   G  PTS    T   V +AC++
Sbjct: 110 FDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHG-RPTSADKYTFTFVFTACSR 168

Query: 229 LKDL-DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
              L   G+  H  V +     ++ + N+L +MY+    M  A  +F  +  +DVI+WT+
Sbjct: 169 HPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTS 228

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRP 346
           +V GY  RG++  AR+ FD MP R+ V W  M+ GY+    + EAL  F +M   + ++P
Sbjct: 229 VVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKP 288

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           +E  +VSIL+ACA+LGAL+ G+W+  YIDKN++     +  ALIDMY KCG ++ A+RVF
Sbjct: 289 NEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVF 348

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
             + ++D  TWT+MI GL+++G G + L  FS+ML     PD++T +GVL+ C+H+G+V+
Sbjct: 349 DGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVE 408

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           EG   F DM    GI P   HYGC++DLLGRAG L  A E IK+MPM+P+ + W ALL A
Sbjct: 409 EGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSA 468

Query: 527 CRVHRDAEMAEMAAKQILELDPDNE-AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           CR+H D ++ E     I EL P +    YVLL N+YA+  +W++  ++R+ +  RG +  
Sbjct: 469 CRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGC 528

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV-GYMPDISEVFLDVGEED 644
           PGCS IE++GVVHEF+A DK HP+  EI  KL+E+   +    GY+P   +V  D+ EED
Sbjct: 529 PGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEED 588

Query: 645 KERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKT 704
           KE+AV  HSEKLA+AFGL+S+  G TIRI KNLR C DCH   K +S+V++RE++VRD++
Sbjct: 589 KEQAVSWHSEKLAVAFGLLSTQEG-TIRITKNLRTCEDCHSAMKTISLVFNREIVVRDRS 647

Query: 705 RFHHFKHGSCSCKDYW 720
           RFH F++G+CSC DYW
Sbjct: 648 RFHTFRYGNCSCTDYW 663



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 210/473 (44%), Gaps = 77/473 (16%)

Query: 3   SNSSISPPS-----TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           ++S+I  PS     +L   +  +  ++   S+ Q+KQIH+Q +  GL  N ++   L+  
Sbjct: 37  TSSAIWEPSGTSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHS 96

Query: 58  CCSEKGDMKYACKVFRKIPR-PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP--- 113
               + ++ +A  VF + P  P   +WN MI+ YS+  S +  + ++  ML    RP   
Sbjct: 97  YIGCR-NLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHG-RPTSA 154

Query: 114 DNYTFPFLLKGFTRDIAVE-FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           D YTF F+    +R   +  +G+ +H  V+K G++S +FV N+L++ Y +   +  A+ +
Sbjct: 155 DKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRV 214

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG--------------------- 211
           FD   + DV+TW ++  GY    +    R+LF  M  +                      
Sbjct: 215 FDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEAL 274

Query: 212 -----------VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
                      V P    +V +LSACA L  LD GK  H Y+ + +I+ +  +  AL DM
Sbjct: 275 QCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDM 334

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           YA CG +  A  +F  +  +D+++WT++++G    G                  LWT   
Sbjct: 335 YAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGL-------------GAECLWT--- 378

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-KTYIDKNKV 379
                          F EM     +PD+ T++ +L  C++ G +E G  +    I    +
Sbjct: 379 ---------------FSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGI 423

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
              +     LID+  + G +E A    + M +  D   W A++    I+G  D
Sbjct: 424 VPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVD 476



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 3/252 (1%)

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPF 120
           +G++  A ++F  +P  +   W  M+ GY     +   +  + DML  D V+P+      
Sbjct: 236 RGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVS 295

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +L       A++ GK +H ++ K     S  +  ALI  Y  CG +D AR +FD  +K D
Sbjct: 296 ILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRD 355

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-H 239
           ++TW +M SG        E    F EM  +G  P  +T++ VL+ C+    ++ G    H
Sbjct: 356 LLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFH 415

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQV 298
             +    IVP L     L D+    G +  A E   ++    DV++W A+++     G V
Sbjct: 416 DMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDV 475

Query: 299 DMARQYFDQMPE 310
           D+  +  + + E
Sbjct: 476 DLGERIINHIAE 487


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/708 (36%), Positives = 404/708 (57%), Gaps = 35/708 (4%)

Query: 16  ETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           E  L + ++ C +   LKQ   IHS  IK G   N  +   LV    S+ G    A  VF
Sbjct: 314 EFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMY-SKCGLAIDAIGVF 372

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           + I +P + +W+ +I    +    +  + ++  M   D  P+ YT   LL   T    ++
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           +G+ +H  V K+GF++ V V NAL++ Y   G V     +++     D+++WNA  SG  
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLH 492

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
               +D    +F  M  +G +P   T + +L +C+ L D+  G++ H ++ + ++  N  
Sbjct: 493 DCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +  AL DMYA C  +          ++ DV                      F+++  RD
Sbjct: 553 VCTALIDMYAKCMYL----------EDADVA---------------------FNRLSVRD 581

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
              WT +I  Y + N+  +AL  FR+MQ   ++P+EFT+   L+ C++L +LE G+ + +
Sbjct: 582 LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHS 641

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            + K+   +D+FVG+AL+DMY KCG +E+A+ +F  ++R+D   W  +I G A NG G+K
Sbjct: 642 MVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNK 701

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L  F  ML   I PD VT+ G+LSAC+H G+V+EG+E+F  M    GI P   H  CMV
Sbjct: 702 ALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMV 761

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           D+LGR G  +E  + I+ M +  N+++W  +LGA ++H +  + E AA ++ EL P+ E+
Sbjct: 762 DILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEES 821

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            Y+LL NI+A   RWD+ + +R ++  +G+KK PGCS +E NG VH FV+ D SHPQ +E
Sbjct: 822 SYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQE 881

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I+LKLDE+  +L  + Y+P    V  +VGE +K+  +  HSE+LA+ F LIS+     IR
Sbjct: 882 IHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIR 941

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I KNLR+C DCH + K +S + ++E++VRD  RFHHFK+G+CSC D+W
Sbjct: 942 IFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 155/612 (25%), Positives = 263/612 (42%), Gaps = 84/612 (13%)

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           YA  V  K+P   V  W  +I+G        + + ++ +M    + P+ +T    LK  +
Sbjct: 165 YARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACS 224

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
             +A++ GK++H    K G    +FV +AL+  Y  CGE+++A  +F    + + VTWN 
Sbjct: 225 LCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNV 284

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + +GY +        KLF  M    V     T+  VL  CA  K+L  G+  H  + +C 
Sbjct: 285 LLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG 344

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF- 305
              N  +   L DMY+ CG    A+ +F  IK  D++ W+A++T    +GQ + + + F 
Sbjct: 345 YEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFH 404

Query: 306 -----DQMP---------------------------------ERDYVLWTAMIDGYLRVN 327
                D +P                                 E D  +  A++  Y++  
Sbjct: 405 LMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNG 464

Query: 328 RFREALTLFREMQTSNI-----------------RP--------------DEFTIVSILT 356
              +   L+  M   ++                 RP              + +T +SIL 
Sbjct: 465 CVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           +C+ L  +  G  V  +I KN++ ++ FV  ALIDMY KC  +E A   F  +  +D FT
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFT 584

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           WT +I   A    G+K+L+ F QM +  + P+E T  G LS C+    + EG +    M 
Sbjct: 585 WTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASL-EGGQQLHSMV 643

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
            + G   +      +VD+  + G + EA E +    ++ ++I W  ++     +     A
Sbjct: 644 FKSGHVSDMFVGSALVDMYAKCGCMEEA-EALFEALIRRDTIAWNTIICGYAQNGQGNKA 702

Query: 537 EMAAKQILE--LDPDNEAVYVLLCNIYAACNRWDNFRELRQ----MILDRGIKKT-PGCS 589
             A + +L+  + PD     V    I +AC+      E ++    M  D GI  T   C+
Sbjct: 703 LTAFRMMLDEGISPDG----VTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCA 758

Query: 590 -MIEMNGVVHEF 600
            M+++ G V +F
Sbjct: 759 CMVDILGRVGKF 770



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 205/454 (45%), Gaps = 71/454 (15%)

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
           DS ++V  +L++ Y  C     AR +       DVV+W A+  G       +++  LF E
Sbjct: 146 DSHLWV--SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQE 203

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M+ +G++P   T+   L AC+    LD+GK+ H    +  ++ +L + +AL D+YA CGE
Sbjct: 204 MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGE 263

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
                                          +++A + F  MPE++ V W  +++GY + 
Sbjct: 264 -------------------------------IELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
                 L LF  M   +++ +EFT+ ++L  CAN   L+ G+ + + I K   + + F+G
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
             L+DMY KCG    A  VF+ + + D   W+A+I  L   G  ++S+ +F  M     +
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P++ T   +LSA T+TG +  G+   A    ++G E + A    +V +  + G +++  +
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHA-CVWKYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 507 VIKNM-----------------------PMK-----------PNSIVWGALLGACRVHRD 532
           + ++M                       P+            PN   + ++LG+C    D
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531

Query: 533 AEMAEMAAKQIL--ELDPDNEAVYVLLCNIYAAC 564
                     I+  +LD DN  V   L ++YA C
Sbjct: 532 VHYGRQVHAHIIKNQLD-DNNFVCTALIDMYAKC 564



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 142/264 (53%), Gaps = 10/264 (3%)

Query: 267 MGFALEIFGNIKNKDVIS-----WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           +G A  I G I  KDVI+     W ++V  Y        AR    +MP+RD V WTA+I 
Sbjct: 128 LGVAKAIHGLIV-KDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQ 186

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           G +      +++ LF+EMQ   I P+EFT+ + L AC+   AL+LG+ +     K  +  
Sbjct: 187 GLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLL 246

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
           D+FVG+AL+D+Y KCG++E A ++F  M  ++  TW  ++ G A  G     L +F  M+
Sbjct: 247 DLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMM 306

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MVDLLGRAGH 500
              +  +E T   VL  C ++  + +G +    + I+ G E NE   GC +VD+  + G 
Sbjct: 307 ELDVKCNEFTLTTVLKGCANSKNLKQG-QVIHSLIIKCGYEGNE-FIGCGLVDMYSKCGL 364

Query: 501 LNEALEVIKNMPMKPNSIVWGALL 524
             +A+ V K +  KP+ +VW AL+
Sbjct: 365 AIDAIGVFKTIK-KPDIVVWSALI 387



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 11/247 (4%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           S+L  CA+  +L + + +   I K+ +  D  +  +L+++Y KC     A+ V  +M  +
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDR 176

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D  +WTA+I GL   G  + S+ +F +M    I+P+E T    L AC+    +D G++  
Sbjct: 177 DVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMH 236

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
           A    + G+  +      +VDL  + G +  A ++   MP + N + W  LL       D
Sbjct: 237 AQ-AFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLLNGYAQRGD 294

Query: 533 AEMAEMAAKQILELDPD-NEAVYVLLCNIYAACNRWDNFRE---LRQMILDRGIKKTP-- 586
                     ++ELD   NE     L  +   C    N ++   +  +I+  G +     
Sbjct: 295 VTGVLKLFCSMMELDVKCNE---FTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFI 351

Query: 587 GCSMIEM 593
           GC +++M
Sbjct: 352 GCGLVDM 358


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/600 (41%), Positives = 370/600 (61%), Gaps = 15/600 (2%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYC--LCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           ++LH   LK    +  FV + L++ Y      ++  AR IFD   +  ++ WN +   Y 
Sbjct: 33  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 92

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
             +   +   LF E+  +  LP + T+  V+  CA+L  +  GK+ H    +     ++ 
Sbjct: 93  ENQFSHDGIVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 151

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVI-----------SWTAIVTGYINRGQVDMA 301
           ++ +L +MY+ CGE+  A ++F  + +KDV+           SW A++ GY+  G  D A
Sbjct: 152 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSA 211

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
            + F QMP  D V W  MI GY    +F +A+ +F  M     RP   T+VS+L+A + L
Sbjct: 212 LELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGL 271

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
             L  G W+ +Y++KN  + D  +G +LI+MY KCG +E A  VFR + +K    WTA+I
Sbjct: 272 AVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAII 331

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
           VGL I+G  + +L +F +M +  + P+ + ++GVL+AC H G+VD+GR+YF  M  ++ I
Sbjct: 332 VGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKI 391

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           EP   HYGC+VD+L RAGHL EA   I+NMP+ PN ++W +LLG  R H   ++ E AA+
Sbjct: 392 EPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQ 451

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           +++E+ P+    Y+LL N+YAA   W+    +R+M+  RG +K PGCS +E  G +HEF+
Sbjct: 452 RVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFI 511

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQHSEKLAMAF 660
            GD SHPQTKEIY K+ EM   LK VG++PD ++V L + GE++KE  +  HSE+LA+AF
Sbjct: 512 VGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAF 571

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           GLI+  PG+ IRI+KNLR+C DCH + KL+S +Y RE+IVRD  RFHHFK+GSCSC DYW
Sbjct: 572 GLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/499 (27%), Positives = 235/499 (47%), Gaps = 82/499 (16%)

Query: 7   ISPPSTLTQETPL---ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK- 62
           ++P  +L Q  P    +S  +TC +  +++Q+H+ ++K  +  +P V ++L+      K 
Sbjct: 4   LTPFHSLQQYLPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKI 63

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
            D+ YA  +F +I R S+  WNT+IK Y       +G++++ +++  +  PDN+T P ++
Sbjct: 64  NDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVI 122

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------- 174
           KG  R   V+ GK++H   LK GF S VFVQ +L++ Y  CGE+D AR +FD        
Sbjct: 123 KGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVV 182

Query: 175 ----------VSYKD------------------------DVVTWNAMFSGYKRVKQFDET 200
                     VS+                          D+VTWN M +GY+   QF + 
Sbjct: 183 LWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDA 242

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
            K+F  M + G  P+  T+V VLSA + L  L  G+  H Y+++     + IL  +L +M
Sbjct: 243 VKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEM 302

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           YA CG +  AL +F  I+ K V  WTAI+ G    G  +                     
Sbjct: 303 YAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMAN--------------------- 341

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKV 379
                      AL LF EM  + ++P+    + +L AC + G ++ G ++    +++ K+
Sbjct: 342 ----------HALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKI 391

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +  +     L+D+ C+ G +E+A+     M +  +K  W +++ G     HG   +  ++
Sbjct: 392 EPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGG--SRNHGKIDIGEYA 449

Query: 439 QMLRASIIPDEVTYVGVLS 457
                 + P+ +    +LS
Sbjct: 450 AQRVIEVAPETIGCYILLS 468


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/524 (45%), Positives = 344/524 (65%), Gaps = 6/524 (1%)

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR----AHRYVKECKIVPNLILENALT 258
           L+  + R G+ PT  T+  +L + A    +   +R     H +     +   L++ NAL 
Sbjct: 75  LYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHAHAVRLGLAGFLLVNNALI 134

Query: 259 DMYAAC-GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            ++A   G +  A  +       D  ++  ++T +   G+V  AR  FD+MPER+ V W+
Sbjct: 135 RVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWS 194

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           AM++GY++    REAL +F +MQ   +RPD+  +V +L ACA LGALE G+WV  Y+  N
Sbjct: 195 AMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKAN 254

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            ++  +F+G AL+DMY KCG+V+    VF  M  K+   WT MI GLA++G G  SL +F
Sbjct: 255 NIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLF 314

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           SQM  + + PD++ ++G L ACTHTG+VD+GRE F  M   +GI+P   HYGCMVDLL R
Sbjct: 315 SQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLAR 374

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
            G L+EA ++++ MPMKP++++WGAL+  CR H++ E+AE   K  +EL+PD    YVLL
Sbjct: 375 NGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLL 434

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            NIY+A  R  + RE+R ++ ++G++KTPGCS +E+ GV+H+F+ GD SHP+ K+I  K 
Sbjct: 435 GNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKW 494

Query: 618 DEMTSDLKF-VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
            E+ S ++   GY+PD  EV LD+ EE+ E A+ +HSEKLA+AF LIS+   + IRIVKN
Sbjct: 495 YEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLAIAFALISTEDYMPIRIVKN 554

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C DCH + KL+S VY RE+IVRD+TRFH FK G+CSCKDYW
Sbjct: 555 LRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCKDYW 598



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 181/408 (44%), Gaps = 74/408 (18%)

Query: 59  CSEKGDMK-----YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP 113
           CS   D +      A  V   + R S  L + +I+ ++     +  + +Y  ++++ + P
Sbjct: 27  CSGGADARPIARIQAALVTSGLLRRSAELHDALIRAHASSGRPQAALPLYAHLIRAGLFP 86

Query: 114 DNYTFPFLLKGFTRDIAVEFGKEL----HCHVLKFGFDSSVFVQNA-------------- 155
             +T P LLK      AV   + L    H H ++ G    + V NA              
Sbjct: 87  TPHTLPSLLKSLALSPAVPGARRLALAVHAHAVRLGLAGFLLVNNALIRVHAGLLGRLAD 146

Query: 156 ------------------LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
                             LI+ +   G V  AR +FD   + + V+W+AM +GY +    
Sbjct: 147 AHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDG 206

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
            E   +F +M+ +GV P    +V VL+ACA+L  L+ GK  H Y+K   I   + L  AL
Sbjct: 207 REALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTAL 266

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            DMYA CGE+   +E+F  +K+K+V++WT ++ G    G                     
Sbjct: 267 VDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHG--------------------- 305

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDK 376
                     R  ++LTLF +M++S ++PD+   +  L AC + G ++ G E   + ++ 
Sbjct: 306 ----------RGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNN 355

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVG 423
             +K  I     ++D+  + G + +A+ +  +M ++ D   W A++ G
Sbjct: 356 YGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAG 403



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 128/295 (43%), Gaps = 9/295 (3%)

Query: 52  NKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV 111
           N L+T   +  G +  A  +F ++P  +   W+ M+ GY +    +  + ++  M    V
Sbjct: 163 NTLIT-AHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGV 221

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
           RPD+     +L    +  A+E GK +H ++       +VF+  AL+  Y  CGEV +   
Sbjct: 222 RPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGME 281

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +F+     +V+ W  M  G     +  ++  LF +ME  GV P  +  +  L AC     
Sbjct: 282 VFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGL 341

Query: 232 LDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIV 289
           +D G+   +  V    I P +     + D+ A  G +  A ++   +  K D + W A++
Sbjct: 342 VDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALM 401

Query: 290 TGYINRGQVDMA----RQYFDQMPERD--YVLWTAMIDGYLRVNRFREALTLFRE 338
            G      V++A    + + +  P++   YVL   +     R    RE   L RE
Sbjct: 402 AGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMRE 456


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/590 (40%), Positives = 375/590 (63%), Gaps = 5/590 (0%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGY 191
           K +H H+L+      VF  + LI+ +C+    ++      V+ +    ++  +NA+  G 
Sbjct: 34  KIIHAHMLRTHLFFDVFAASRLIA-FCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGC 92

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
              +  + +   + +  R G+LP ++T   ++ ACA+L++  +G + H    +     + 
Sbjct: 93  STSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDF 152

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            ++N+L  MYA+ G++  A  +F  +   DV+SWT ++ GY   G    AR+ FD+MPER
Sbjct: 153 YVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPER 212

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           + V W+ MI GY R N F +A+  F  +Q   +  +E  +V ++++CA+LGAL +GE   
Sbjct: 213 NLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAH 272

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            Y+ +NK+  ++ +G A++DMY +CG+VEKA  VF ++  KD   WTA+I GLA++G+ +
Sbjct: 273 EYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAE 332

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           K+L  FS+M +   +P ++T+  VL+AC+H GMV+ G E F  M   HG+EP   HYGCM
Sbjct: 333 KALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCM 392

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAG L +A + +  MP+KPN+ +W ALLGACR+H++ E+ E   K +LE+ P+  
Sbjct: 393 VDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYS 452

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL NIYA  N+W +   +RQM+ D+G++K PG S+IE++G VHEF  GDK+HP+ +
Sbjct: 453 GHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIE 512

Query: 612 EI-YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
           +I  +  D +   +K  GY+ + +E   D+ EE+KE A+++HSEKLA+A+G++       
Sbjct: 513 KIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTP 572

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IRIVKNLR+C DCH   KL+S V++ E+IVRD+ RFHHFK G+CSC DYW
Sbjct: 573 IRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 216/453 (47%), Gaps = 65/453 (14%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SE 61
           ++ S S   TL  + P +  +E C +   LK IH+  ++  L  +    ++L+ FC  S 
Sbjct: 4   TSGSNSILKTLRLKNPKLVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDST 63

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
              + YA +V  +I  P++ ++N +I+G S  ++ +N    Y+  L+  + PDN T PFL
Sbjct: 64  TNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFL 123

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY--------------------- 160
           +K   +      G + H   +K GF+   +VQN+L+  Y                     
Sbjct: 124 VKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDV 183

Query: 161 ----CL------CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
               C+      CG+   AR +FD   + ++VTW+ M SGY R   F++  + F  ++ +
Sbjct: 184 VSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAE 243

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           GV+     +V V+S+CA L  L +G++AH YV   K+  NLIL  A+ DMYA CG +  A
Sbjct: 244 GVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKA 303

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
           + +F  +  KDV+ WTA++ G    G  + A  YF +M ++ +V                
Sbjct: 304 VMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFV---------------- 347

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNAL 389
                          P + T  ++LTAC++ G +E G E  ++    + V+  +     +
Sbjct: 348 ---------------PRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCM 392

Query: 390 IDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
           +D+  + G + KA++   +M ++ +   W A++
Sbjct: 393 VDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALL 425


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/691 (37%), Positives = 386/691 (55%), Gaps = 38/691 (5%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           + +H+Q    GL         L      C   GD +   +VF ++P      WN ++ GY
Sbjct: 245 RAVHAQLAARGLSPEALAATALANMYAKCRRPGDAR---RVFDRMPARDRVAWNALVAGY 301

Query: 91  SRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
           +R    +  V + + M + D  RPD  T   +L       A+   +E+H   ++ GFD  
Sbjct: 302 ARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQ 361

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           V V  A++  YC CG VD AR +FD     + V+WNAM  GY       E   LF  M  
Sbjct: 362 VNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVG 421

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
           +GV  T V+++  L AC +L  LD G+R H  +    +  N+ + NAL  MY  C     
Sbjct: 422 EGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCK---- 477

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
                                      + D+A Q FD++  +  V W AMI G  +    
Sbjct: 478 ---------------------------RTDLAAQVFDELGYKTRVSWNAMILGCTQNGSS 510

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
            +A+ LF  MQ  N++PD FT+VSI+ A A++       W+  Y  +  +  D++V  AL
Sbjct: 511 EDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTAL 570

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           IDMY KCG V  A+ +F     +   TW AMI G   +G G  ++++F +M  +  +P+E
Sbjct: 571 IDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNE 630

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
            T++ VLSAC+H G+VDEG+EYF+ M   +G+EP   HYG MVDLLGRAG L+EA   I+
Sbjct: 631 TTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQ 690

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
            MPM+P   V+GA+LGAC++H++ E+AE +A++I EL+P+    +VLL NIYA  + W +
Sbjct: 691 KMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKD 750

Query: 570 FRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGY 629
              +R  +  +G++KTPG S++++   +H F +G  +H Q K+IY +L ++  ++K VGY
Sbjct: 751 VARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGY 810

Query: 630 MPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKL 689
           +PD   +  DV ++ K + +  HSEKLA+A+GLI + PG TI+I KNLR+C DCH   KL
Sbjct: 811 VPDTDSIH-DVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKL 869

Query: 690 VSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +S+V  RE+I+RD  RFHHFK G CSC DYW
Sbjct: 870 ISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 186/425 (43%), Gaps = 34/425 (8%)

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           P   TF  LLK       +  G+ +H  +   G         AL + Y  C     AR +
Sbjct: 223 PVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRV 282

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKD 231
           FD     D V WNA+ +GY R    +    +   M E  G  P +VT+V VL ACA  + 
Sbjct: 283 FDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQA 342

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           L   +  H +         + +  A+ D+Y  CG +  A ++F  +++++ +SW A++ G
Sbjct: 343 LGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKG 402

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           Y   G                                  EAL LF+ M    +   + ++
Sbjct: 403 YAENGDAT-------------------------------EALALFKRMVGEGVDVTDVSV 431

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           ++ L AC  LG L+ G  V   + +  +++++ V NALI MYCKC   + A +VF E+  
Sbjct: 432 LAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGY 491

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           K + +W AMI+G   NG  + ++ +FS+M   ++ PD  T V ++ A        + R +
Sbjct: 492 KTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQAR-W 550

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531
               +I+  ++ +      ++D+  + G ++ A  +  N     + I W A++     H 
Sbjct: 551 IHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLF-NSARDRHVITWNAMIHGYGSHG 609

Query: 532 DAEMA 536
             ++A
Sbjct: 610 SGKVA 614



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 188/466 (40%), Gaps = 85/466 (18%)

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G  P   T   +L  CA   DL  G+  H  +    + P  +   AL +MYA C   G A
Sbjct: 220 GSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDA 279

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
             +F  +  +D ++W A+V GY   G  + A     +M E D                  
Sbjct: 280 RRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEED------------------ 321

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
                         RPD  T+VS+L ACA+  AL     V  +  +      + V  A++
Sbjct: 322 ------------GERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAIL 369

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           D+YCKCG V+ A++VF  M  ++  +W AMI G A NG   ++L +F +M+   +   +V
Sbjct: 370 DVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDV 429

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           + +  L AC   G +DEGR    ++ ++ G+E N      ++ +  +    + A +V   
Sbjct: 430 SVLAALHACGELGFLDEGRRVH-ELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDE 488

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAE--MAAKQILELDPD------------------- 549
           +  K   + W A++  C  +  +E A    +  Q+  + PD                   
Sbjct: 489 LGYK-TRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQ 547

Query: 550 -------------NEAVYVL--LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
                        ++ VYVL  L ++YA C R    R L     DR +        I  N
Sbjct: 548 ARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHV--------ITWN 599

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
            ++H    G  SH   K      +EM S     G +P+    FL V
Sbjct: 600 AMIH----GYGSHGSGKVAVELFEEMKSS----GKVPN-ETTFLSV 636


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/690 (38%), Positives = 388/690 (56%), Gaps = 33/690 (4%)

Query: 31   QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
            + K+IH    KLG  +  TV N L+     + G++  A K+F ++    V  WN+MI G 
Sbjct: 571  ECKRIHGCVYKLGFGSYNTVVNSLIA-TYFKSGEVDSAHKLFDELGDRDVVSWNSMISGC 629

Query: 91   SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
                   + +  ++ ML   V  D  T    +       ++  G+ LH   +K  F   V
Sbjct: 630  VMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREV 689

Query: 151  FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
               N L+  Y  CG ++ A   F+   +  VV+W ++ + Y R   +D+  +LF EME K
Sbjct: 690  MFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESK 749

Query: 211  GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
            GV P   ++  VL ACA    LD G+  H Y+++  +   L + NAL DMYA CG M   
Sbjct: 750  GVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSM--- 806

Query: 271  LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
                                        + A   F Q+P +D V W  MI GY + +   
Sbjct: 807  ----------------------------EEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPN 838

Query: 331  EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
            EAL LF EMQ  + RPD  T+  +L AC +L ALE+G  +   I +N   +++ V NALI
Sbjct: 839  EALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALI 897

Query: 391  DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            DMY KCG +  A+ +F  +  KD  TWT MI G  ++G G++++  F +M  A I PDE+
Sbjct: 898  DMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEI 957

Query: 451  TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
            T+  +L AC+H+G+++EG  +F  M  +  +EP   HY CMVDLL R G+L++A  +I+ 
Sbjct: 958  TFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIET 1017

Query: 511  MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
            MP+KP++ +WGALL  CR+H D E+AE  A+ + EL+PDN   YVLL NIYA   +W+  
Sbjct: 1018 MPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEV 1077

Query: 571  RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
            ++LR+ I  RG+KK+PGCS IE+ G    FV+ D +HPQ K I+  L+ +   +K  G+ 
Sbjct: 1078 KKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHS 1137

Query: 631  PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
            P +    ++ G+ +KE A+  HSEKLAMAFG+++   G TIR+ KNLR+C DCH MAK +
Sbjct: 1138 PKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFM 1197

Query: 691  SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            S    RE+I+RD  RFHHFK G CSC+D+W
Sbjct: 1198 SKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 193/414 (46%), Gaps = 38/414 (9%)

Query: 19   LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            L++ +  C ++  L   + +H Q +K          N L+    S+ G++  A + F K+
Sbjct: 657  LVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMY-SKCGNLNDAIQAFEKM 715

Query: 76   PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
             + +V  W ++I  Y R   + + + ++ +M    V PD Y+   +L       +++ G+
Sbjct: 716  GQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGR 775

Query: 136  ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
            ++H ++ K      + V NAL+  Y  CG ++ A  +F      D+V+WN M  GY +  
Sbjct: 776  DVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNS 835

Query: 196  QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
              +E  KLF EM+++   P  +T+  +L AC  L  L++G+  H  +        L + N
Sbjct: 836  LPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVAN 894

Query: 256  ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
            AL DMY  CG +  A  +F  I  KD+I+WT +++G    G  +                
Sbjct: 895  ALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGN---------------- 938

Query: 316  WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYI 374
                           EA+  F++M+ + I+PDE T  SIL AC++ G L  G  +  + I
Sbjct: 939  ---------------EAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMI 983

Query: 375  DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
             +  ++  +     ++D+  + G++ KA  +   M ++ D   W A++ G  I+
Sbjct: 984  SECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIH 1037



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 134/546 (24%), Positives = 231/546 (42%), Gaps = 63/546 (11%)

Query: 66  KYACKVFRKIPRPSVCLW-------NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           KY    +  +PR S  +        NT I  +  +   +N V +     KS++  + Y+ 
Sbjct: 397 KYFLSSYLDVPRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYSS 456

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             +L+       ++ GK +H  +   G      +   L+  Y  CG +   R IFD    
Sbjct: 457 --ILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILS 514

Query: 179 DD-VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           D+ V  WN M S Y ++  + E+  LF +M++ G+   S T   +L   A L  +   KR
Sbjct: 515 DNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKR 574

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H  V +                      +GF    +  + N       +++  Y   G+
Sbjct: 575 IHGCVYK----------------------LGFG--SYNTVVN-------SLIATYFKSGE 603

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
           VD A + FD++ +RD V W +MI G +       AL  F +M    +  D  T+V+ + A
Sbjct: 604 VDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAA 663

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
           CAN+G+L LG  +     K     ++   N L+DMY KCG++  A + F +M +K   +W
Sbjct: 664 CANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSW 723

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE---YFAD 474
           T++I      G  D ++ +F +M    + PD  +   VL AC     +D+GR+   Y   
Sbjct: 724 TSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRK 783

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
             +   +  + A    ++D+  + G + EA  V   +P+K + + W  ++G    +    
Sbjct: 784 NNMALCLPVSNA----LMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIGG---YSKNS 835

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           +   A K   E+  ++    + +  +  AC        L  + + RGI    GC  I  N
Sbjct: 836 LPNEALKLFAEMQKESRPDGITMACLLPACG------SLAALEIGRGIH---GC--ILRN 884

Query: 595 GVVHEF 600
           G   E 
Sbjct: 885 GYSSEL 890


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/656 (37%), Positives = 396/656 (60%), Gaps = 38/656 (5%)

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           + + + +V  WN++I   +R       +  +  M K  ++P+  TFP  +K  +  + + 
Sbjct: 110 KYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLH 169

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G++ H   L FGF+  +FV +AL+  Y  CGE+  AR +FD     ++V+W +M +GY 
Sbjct: 170 SGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYV 229

Query: 193 RVKQFDETRKLFGE--MERKG------VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           +         LF E  +E  G      V    + +V VLSAC+++ +  + +  H ++ +
Sbjct: 230 QNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIK 289

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                +L +EN L D YA CGE+G +  +F  +  +DVISW +I+  Y   G    + + 
Sbjct: 290 RGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEI 349

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           F +M +          DG +  N                      T+ ++L ACA+ G+ 
Sbjct: 350 FHRMVK----------DGEINYN--------------------AVTLSAVLLACAHSGSQ 379

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
            LG+ +   + K  +++++FVG ++IDMYCKCG VE A++ F  M  K+  +W+AM+ G 
Sbjct: 380 RLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGY 439

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
            ++GH  ++L++F +M  A + P+ +T+V VL+AC+H G+++EG  +F  M+ +  +EP 
Sbjct: 440 GMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPG 499

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGCMVDLLGRAG+L EA ++IK M ++P+ +VWGALLGACR+H++ ++ E++A+++ 
Sbjct: 500 VEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLF 559

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           ELDP N   YVLL NIYA   RW++   +R ++ + G+ K PG S++++ G VH F+ GD
Sbjct: 560 ELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGD 619

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           + HPQ ++IY  L++++  L+ VGY+PD++ V  DVG E+KE  +  HSEKLA+AFG+++
Sbjct: 620 REHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMN 679

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + PG TI I+KNLR+C DCH   K +S + DRE++VRD  RFHHF+ G CSC DYW
Sbjct: 680 TVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 201/431 (46%), Gaps = 46/431 (10%)

Query: 5   SSISPPSTLTQETPLISPIETCESM---HQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           SS+   S     +     I++C ++   H  +Q H Q +  G   +  V + LV    S+
Sbjct: 141 SSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMY-SK 199

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML--------KSDVRP 113
            G+++ A  +F +I   ++  W +MI GY + D     +L++ + L          +V  
Sbjct: 200 CGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCV 259

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           D      +L   +R       + +H  ++K GF+  + V+N L+  Y  CGE+ ++R +F
Sbjct: 260 DPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVF 319

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP-TSVTIVLVLSACAKLKDL 232
           D   + DV++WN++ + Y +     E+ ++F  M + G +   +VT+  VL ACA     
Sbjct: 320 DGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQ 379

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
            +GK  H  V +  +  N+ +  ++ DMY  CG++  A + F  ++ K+V SW+A+V GY
Sbjct: 380 RLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGY 439

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G                                 +EAL +F EM  + ++P+  T V
Sbjct: 440 GMHGHA-------------------------------KEALEVFYEMNMAGVKPNYITFV 468

Query: 353 SILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-L 410
           S+L AC++ G LE G  W K    +  V+  +     ++D+  + G +++A  + + M L
Sbjct: 469 SVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKL 528

Query: 411 RKDKFTWTAMI 421
           R D   W A++
Sbjct: 529 RPDFVVWGALL 539



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 166/349 (47%), Gaps = 17/349 (4%)

Query: 19  LISPIETCESMHQ---LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           ++S +  C  + +    + +H   IK G   +  V+N L+    ++ G++  + +VF  +
Sbjct: 264 MVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMD-AYAKCGELGVSRRVFDGM 322

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFG 134
               V  WN++I  Y++       + I+  M+K  ++  +  T   +L       +   G
Sbjct: 323 AERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLG 382

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K +H  V+K G +S+VFV  ++I  YC CG+V+MAR  FD   + +V +W+AM +GY   
Sbjct: 383 KCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMH 442

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLIL 253
               E  ++F EM   GV P  +T V VL+AC+    L+ G    + +  E  + P +  
Sbjct: 443 GHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEH 502

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDM----ARQYFDQM 308
              + D+    G +  A ++   +K + D + W A++        VD+    AR+ F+  
Sbjct: 503 YGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELD 562

Query: 309 PER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRPDEFTIVSI 354
           P+    YVL + +   Y    R+ +   +   M+ S  ++P  F++V I
Sbjct: 563 PKNCGYYVLLSNI---YADAGRWEDVERMRILMKNSGLVKPPGFSLVDI 608


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/596 (39%), Positives = 374/596 (62%), Gaps = 14/596 (2%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF------DVSYKDDVVTWNAMF 188
           K++H H+++ G     +V   LI    +  +VD+  G +       V+Y +  + W AM 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIR---MLTKVDVPMGSYPLLVFGQVNYPNPFL-WTAMI 114

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKI 247
            GY       E+   +  M R GV P S T   +  AC    ++D+GK+ H + +     
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             +L + N++ D+Y  CG +G A ++F  +  +DV+SWT ++  Y   G ++ A   FD 
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           +P +D V WTAM+ GY +  R +EAL  F++MQ   +  DE T+  +++ACA LGA++  
Sbjct: 235 LPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 368 EWVKTYIDKNKV--KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            W++   +++      ++ VG+ALIDMY KCG  ++A +VF  M  ++ F++++MI+G A
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYA 354

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           ++G    +L +F  ML+  I P++VT++G+LSAC+H G+V++GR+ FA M    G+ P+ 
Sbjct: 355 MHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSP 414

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HY CMVDLLGRAG L EAL+++K MPM+PN  VWGALLGACR+H + ++A++AA ++ +
Sbjct: 415 DHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK 474

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE-MNGVVHEFVAGD 604
           L+P+    Y+LL NIYA+  RW+   +LR++I ++G KK PGCS  E  NG +H+F AGD
Sbjct: 475 LEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGD 534

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
            +HP++ EI   L ++   L+  GY P++     D+ +++KER +  HSEKLA+A+GL+ 
Sbjct: 535 TTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLC 594

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  G TI+I+KN+R+C DCH +    S +  RE+IVRD  RFHHF +G+CSC ++W
Sbjct: 595 TEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 202/460 (43%), Gaps = 82/460 (17%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM-KYACKVFRK 74
           E  L+S +  C    Q+KQ+H+  I+ GL     V  KL+         M  Y   VF +
Sbjct: 42  EWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQ 101

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           +  P+  LW  MI+GY+           Y  M +  V P ++TF  L K     + ++ G
Sbjct: 102 VNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG 161

Query: 135 KELHCH-VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------VSYKD------- 179
           K++H   +L  GF S ++V N++I  Y  CG +  AR +FD       VS+ +       
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAK 221

Query: 180 -----------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
                            D+V W AM +GY +  +  E  + F +M+  G+    VT+  V
Sbjct: 222 YGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVP--NLILENALTDMYAACGEMGFALEIFGNIKNK 280
           +SACA+L  +          +     P  N+++ +AL DMY+ CG    A ++F  +K +
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +V S+++++ GY   G                               R   AL LF +M 
Sbjct: 342 NVFSYSSMILGYAMHG-------------------------------RAHSALQLFHDML 370

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA--------LIDM 392
            + IRP++ T + IL+AC++ G +E G  +   ++K       F G A        ++D+
Sbjct: 371 KTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK-------FFGVAPSPDHYACMVDL 423

Query: 393 YCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
             + G +E+A  + + M +  +   W A++    I+G+ D
Sbjct: 424 LGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPD 463



 Score = 47.0 bits (110), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 6/136 (4%)

Query: 14  TQETPLISPIETCESMHQLKQIH-----SQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           T E  L   I  C  +  +K  +     ++    G   N  V + L+    S+ G    A
Sbjct: 273 TDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMY-SKCGSPDEA 331

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            KVF  +   +V  +++MI GY+      + + ++ DMLK+++RP+  TF  +L   +  
Sbjct: 332 YKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHA 391

Query: 129 IAVEFGKELHCHVLKF 144
             VE G++L   + KF
Sbjct: 392 GLVEQGRQLFAKMEKF 407


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 257/653 (39%), Positives = 381/653 (58%), Gaps = 32/653 (4%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A K+F ++    V  WN+MI GY      + G+ ++  ML   +  D  T   ++ G + 
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSN 263

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
              +  G+ LH + +K  F   + + N L+  Y   G ++ A  +F+   +  VV+W +M
Sbjct: 264 TGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSM 323

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            +GY R    D + +LF EME++G+ P   TI  +L ACA    L+ GK  H Y+KE K+
Sbjct: 324 IAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKM 383

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             +L + NAL DMYA CG MG A  +F                                +
Sbjct: 384 QSDLFVSNALMDMYAKCGSMGDAHSVF-------------------------------SE 412

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           M  +D V W  MI GY + +   EAL LF EMQ  N +P+  T+  IL ACA+L ALE G
Sbjct: 413 MQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQY-NSKPNSITMACILPACASLAALERG 471

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           + +  +I +N    D  V NAL+DMY KCG +  A+ +F  +  KD  +WT MI G  ++
Sbjct: 472 QEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMH 531

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G+G +++  F++M  + I PDEV+++ +L AC+H+G++DEG  +F  M     IEP   H
Sbjct: 532 GYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEH 591

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y C+VDLL RAG+L++A + IK MP++P++ +WGALL  CR++ D ++AE  A+ + EL+
Sbjct: 592 YACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELE 651

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P+N   YVLL NIYA   +W+  ++LR+ I  RG++K PGCS IE+ G VH FV GD SH
Sbjct: 652 PENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSH 711

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P   +I L L +  + +K  G+ P +    +   + +KE A+  HSEK+AMAFG++S  P
Sbjct: 712 PLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPP 771

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G T+R+ KNLR+C DCH MAK +S +  R++I+RD  RFHHFK GSCSC+ +W
Sbjct: 772 GKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 149/581 (25%), Positives = 250/581 (43%), Gaps = 100/581 (17%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           N S  P   L     ++      +S+   ++IHS      +  +  + +KLV F     G
Sbjct: 92  NQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLV-FMYVTCG 150

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           D++   ++F K+    V LWN ++ GY++I + +  + ++  M +  +R           
Sbjct: 151 DLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIR----------- 199

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
                                                     V+ AR +FD     DV++
Sbjct: 200 -----------------------------------------RVESARKLFDELGDRDVIS 218

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           WN+M SGY      ++   LF +M   G+     T+V V++ C+    L +G+  H Y  
Sbjct: 219 WNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAI 278

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           +      L L N L DMY+  G +  A+++F  +  + V+SWT+++ GY   G  DM   
Sbjct: 279 KASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDM--- 335

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
                                       ++ LF EM+   I PD FTI +IL ACA  G 
Sbjct: 336 ----------------------------SVRLFHEMEKEGISPDIFTITTILHACACTGL 367

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           LE G+ V  YI +NK+++D+FV NAL+DMY KCG +  A  VF EM  KD  +W  MI G
Sbjct: 368 LENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGG 427

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            + N   +++L++F +M   S  P+ +T   +L AC     ++ G+E    + +++G   
Sbjct: 428 YSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHI-LRNGFSL 485

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
           +      +VD+  + G L  A  +   +P K + + W  ++    +H     A  A  ++
Sbjct: 486 DRHVANALVDMYLKCGALGLARLLFDMIPEK-DLVSWTVMIAGYGMHGYGSEAIAAFNEM 544

Query: 544 LE--LDPDNEAVYVLLCNIYAACNR-------WDNFRELRQ 575
               ++PD     V   +I  AC+        W  F  +R 
Sbjct: 545 RNSGIEPDE----VSFISILYACSHSGLLDEGWGFFNMMRN 581


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 258/702 (36%), Positives = 406/702 (57%), Gaps = 10/702 (1%)

Query: 19   LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            ++S I   + +  +  +    IK G   +  V + ++    +  G +  A   F  +P  
Sbjct: 367  VLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILN-AYTRNGSLDLAMHFFETMPER 425

Query: 79   SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            +   W TMI  +++     + + +Y  + +  V     T   ++  + +   ++  + + 
Sbjct: 426  NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKARLIF 481

Query: 139  CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
              +L    + +V   NA+I+ Y   G +  A+ +F      +  +W AM +G+ + ++  
Sbjct: 482  DEIL----NPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESR 537

Query: 199  ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
            E  +L  E+ R G +P+  +    LSACA + D+++G+  H    +     N  + N L 
Sbjct: 538  EALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLI 597

Query: 259  DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
             MYA CG +     +F  I+ KD +SW ++++G      +D AR  F++MP+RD V WTA
Sbjct: 598  SMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTA 657

Query: 319  MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
            +I  Y++      AL LF +M    I+P++ T+ S+L+AC NLGA++LGE     I K  
Sbjct: 658  IISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLG 717

Query: 379  VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
                +FVGN+LI MY KCG  E    VF EM   D  TW A++VG A NG G +++ +F 
Sbjct: 718  FDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFE 776

Query: 439  QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
            QM    I+PD+++++GVL AC+H G+VDEG  +F  MT ++GI P   HY CMVDLLGRA
Sbjct: 777  QMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRA 836

Query: 499  GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
            G+L+EA  +I+NMP+KP+S++W ALLGACR+HR+ E+ +  A+++ ++     A YVLL 
Sbjct: 837  GYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLS 896

Query: 559  NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
            N++A+   WD   E+R+++ D+G+ K PG S I++   +H FV GD++H Q +EIY  L 
Sbjct: 897  NLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALK 956

Query: 619  EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
            E     +  GYMPD + V  DV EE K+  +  HSEKLA+ FG++S+  G  I+I+KNLR
Sbjct: 957  EYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLR 1016

Query: 679  MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +C DCH   K +S V  R++I+RD  RFHHF+ GSCSC DYW
Sbjct: 1017 ICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/554 (25%), Positives = 240/554 (43%), Gaps = 92/554 (16%)

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           M  A ++F ++P  +   W  MI GY  I  +     +++ M ++  RPD   F  +L  
Sbjct: 311 MSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSA 370

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
            T    +E    L    +K G++  V V +A+++ Y   G +D+A   F+   + +  +W
Sbjct: 371 ITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSW 430

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
             M + + +  + D+  +L+  +  + V   +                            
Sbjct: 431 TTMIAAFAQCGRLDDAIQLYERVPEQTVATKT---------------------------- 462

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                      A+   YA  G +  A  IF  I N +V++W AI+ GY   G +  A+  
Sbjct: 463 -----------AMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDL 511

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           F +MP ++   W AMI G+++    REAL L  E+  S   P + +  S L+ACAN+G +
Sbjct: 512 FQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDV 571

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           E+G  + +   K   + + +V N LI MY KCG+VE    VFR +  KD  +W ++I GL
Sbjct: 572 EIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGL 631

Query: 425 AIN-------------------------------GHGDKSLDMFSQMLRASIIPDEVTYV 453
           + N                               GHG+ +LD+F  ML   I P+++T  
Sbjct: 632 SENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVT 691

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            +LSAC + G +  G ++ A +  + G +        ++ +  + G+  +   V + MP 
Sbjct: 692 SLLSACGNLGAIKLGEQFHA-LIFKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEMP- 748

Query: 514 KPNSIVWGALLGACRVHRDAEMA-----EMAAKQILELDPDNEAVYVLLCNIYAACNR-- 566
           + + I W A+L  C  +   + A     +M  + IL   PD  +   +LC    AC+   
Sbjct: 749 EHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGIL---PDQMSFLGVLC----ACSHAG 801

Query: 567 -----WDNFRELRQ 575
                W +F  + Q
Sbjct: 802 LVDEGWAHFNSMTQ 815



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 193/379 (50%), Gaps = 18/379 (4%)

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           + +F  N  I      G V+ AR +F+   + DVV+WN+M +GY +  + DE R LF   
Sbjct: 169 THLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAF 228

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
             K +     T  ++L+  AK   ++      R V E     N++  NA+   Y   G++
Sbjct: 229 VGKNIR----TWTILLTGYAKEGRIEEA----REVFESMTERNVVSWNAMISGYVQNGDL 280

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A ++F  +  K+V SW ++VTGY +  ++  AR+ FDQMPER+ V W  MI GY+ ++
Sbjct: 281 KNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHIS 340

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
            + EA  +F +M  +  RPD+   V +L+A   L  LEL   ++    K   + D+ VG+
Sbjct: 341 DYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGS 400

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           A+++ Y + G ++ A   F  M  +++++WT MI   A  G  D ++ ++ ++   ++  
Sbjct: 401 AILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV-- 458

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
              T   +++A    G + + R  F ++     + PN   +  ++    + G L EA ++
Sbjct: 459 --ATKTAMMTAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDL 511

Query: 508 IKNMPMKPNSIVWGALLGA 526
            + MP+K NS  W A++  
Sbjct: 512 FQKMPVK-NSASWAAMIAG 529



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/540 (23%), Positives = 260/540 (48%), Gaps = 59/540 (10%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A +VF ++ +  V  WN+MI GYS+        L++   +  ++R    T+  LL
Sbjct: 185 GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR----TWTILL 240

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
            G+ ++  +E  +E    V +   + +V   NA+IS Y   G++  AR +FD   + +V 
Sbjct: 241 TGYAKEGRIEEARE----VFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVA 296

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL----DVGKRA 238
           +WN++ +GY    +  E R+LF +M  +     SV+ ++++S    + D     DV    
Sbjct: 297 SWNSVVTGYCHCYRMSEARELFDQMPER----NSVSWMVMISGYVHISDYWEAWDV---- 348

Query: 239 HRYVKECKIVPN------LILENALTDMYAACGEMGFALEIFGNIK--------NKDVIS 284
             +VK C+ V        +++ +A+T +          LE+ G+++          DV+ 
Sbjct: 349 --FVKMCRTVARPDQSIFVVVLSAITGLD--------DLELIGSLRPIAIKTGYEGDVVV 398

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
            +AI+  Y   G +D+A  +F+ MPER+   WT MI  + +  R  +A+ L+  +    +
Sbjct: 399 GSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV 458

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
                T  +++TA A +G ++    +   I    +  ++   NA+I  Y + G +++A+ 
Sbjct: 459 A----TKTAMMTAYAQVGRIQKARLIFDEI----LNPNVVAWNAIIAGYTQNGMLKEAKD 510

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           +F++M  K+  +W AMI G   N    ++L++  ++ R+  +P + ++   LSAC + G 
Sbjct: 511 LFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGD 570

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           V+ GR     + I+ G + N      ++ +  + G++ +   V + + +K +++ W +L+
Sbjct: 571 VEIGR-VIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK-DTVSWNSLI 628

Query: 525 GACRVHRDAEMAEMAAKQILELDPDNEAV-YVLLCNIYAACNRWDNFRELRQMILDRGIK 583
                +   +     A+ + E  P  + V +  + + Y      +   +L   +L RGIK
Sbjct: 629 SGLSENYMLD----DARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIK 684



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 27/205 (13%)

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           +K   +  +F  N  I    + G VE+A+RVF EM+++D  +W +MI G + NG  D++ 
Sbjct: 163 NKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEAR 222

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            +F   +  +I     T+  +L+     G ++E RE F  MT     E N   +  M+  
Sbjct: 223 LLFDAFVGKNI----RTWTILLTGYAKEGRIEEAREVFESMT-----ERNVVSWNAMISG 273

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAAKQILELDPDNEAV 553
             + G L  A ++   MP K N   W +++ G C  +R +E     A+++ +  P+  +V
Sbjct: 274 YVQNGDLKNARKLFDEMPEK-NVASWNSVVTGYCHCYRMSE-----ARELFDQMPERNSV 327

Query: 554 --------YVLLCNIYAACNRWDNF 570
                   YV + + + A   WD F
Sbjct: 328 SWMVMISGYVHISDYWEA---WDVF 349



 Score = 46.6 bits (109), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 12/218 (5%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF---CCSEKGDMK 66
           P+ LT  T L+S      ++   +Q H+   KLG  T   V N L+T    C  E G   
Sbjct: 685 PNQLTV-TSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDG--- 740

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
             C VF ++P   +  WN ++ G ++    K  + I+  M    + PD  +F  +L   +
Sbjct: 741 -FC-VFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACS 798

Query: 127 RDIAVEFG-KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTW 184
               V+ G    +    K+G    V+    ++      G +  A  + + +  K D V W
Sbjct: 799 HAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIW 858

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
            A+  G  R+ +  E  +   E   +   P S T VL+
Sbjct: 859 EALL-GACRIHRNVELGQRVAERLFQMTKPKSATYVLL 895


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/596 (39%), Positives = 374/596 (62%), Gaps = 14/596 (2%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF------DVSYKDDVVTWNAMF 188
           K++H H+++ G     +V   LI    +  +VD+  G +       V+Y +  + W AM 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIR---MLTKVDVPMGSYPLLVFGQVNYPNPFL-WTAMI 114

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKI 247
            GY       E+   +  M R GV P S T   +  AC    ++D+GK+ H + +     
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             +L + N++ D+Y  CG +G A ++F  +  +DV+SWT ++  Y   G ++ A   FD 
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           +P +D V WTAM+ GY +  R +EAL  F++MQ   +  DE T+  +++ACA LGA++  
Sbjct: 235 LPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 368 EWVKTYIDKNKV--KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            W++   +++      ++ VG+ALIDMY KCG  ++A +VF  M  ++ F++++MI+G A
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYA 354

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           ++G    +L +F  ML+  I P++VT++G+LSAC+H G+V++GR+ FA M    G+ P+ 
Sbjct: 355 MHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSP 414

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HY CMVDLLGRAG L EAL+++K MPM+PN  VWGALLGACR+H + ++A++AA ++ +
Sbjct: 415 DHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK 474

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE-MNGVVHEFVAGD 604
           L+P+    Y+LL NIYA+  RW+   +LR++I ++G KK PGCS  E  NG +H+F AGD
Sbjct: 475 LEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGD 534

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
            +HP++ EI   L ++   L+  GY P++     D+ +++KER +  HSEKLA+A+GL+ 
Sbjct: 535 TTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLC 594

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  G TI+I+KN+R+C DCH +    S +  RE+IVRD  RFHHF +G+CSC ++W
Sbjct: 595 TEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 202/460 (43%), Gaps = 82/460 (17%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM-KYACKVFRK 74
           E  L+S +  C    Q+KQ+H+  I+ GL     V  KL+         M  Y   VF +
Sbjct: 42  EWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQ 101

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           +  P+  LW  MI+GY+           Y  M +  V P ++TF  L K     + ++ G
Sbjct: 102 VNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG 161

Query: 135 KELHCH-VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------VSYKD------- 179
           K++H   +L  GF S ++V N++I  Y  CG +  AR +FD       VS+ +       
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAK 221

Query: 180 -----------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
                            D+V W AM +GY +  +  E  + F +M+  G+    VT+  V
Sbjct: 222 YGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVP--NLILENALTDMYAACGEMGFALEIFGNIKNK 280
           +SACA+L  +          +     P  N+++ +AL DMY+ CG    A ++F  +K +
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +V S+++++ GY   G                               R   AL LF +M 
Sbjct: 342 NVFSYSSMILGYAMHG-------------------------------RAHSALQLFHDML 370

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA--------LIDM 392
            + IRP++ T + IL+AC++ G +E G  +   ++K       F G A        ++D+
Sbjct: 371 KTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK-------FFGVAPSPDHYACMVDL 423

Query: 393 YCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
             + G +E+A  + + M +  +   W A++    I+G+ D
Sbjct: 424 LGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPD 463



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 6/136 (4%)

Query: 14  TQETPLISPIETCESMHQLKQIH-----SQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           T E  L   I  C  +  +K  +     ++    G   N  V + L+    S+ G    A
Sbjct: 273 TDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMY-SKCGSPDEA 331

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            KVF  +   +V  +++MI GY+      + + ++ DMLK+++RP+  TF  +L   +  
Sbjct: 332 YKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHA 391

Query: 129 IAVEFGKELHCHVLKF 144
             VE G++L   + KF
Sbjct: 392 GLVEQGRQLFAKMEKF 407


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/700 (38%), Positives = 391/700 (55%), Gaps = 33/700 (4%)

Query: 21   SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
            S I +  ++  +K +H    + G +++  + N L+    ++ G +  A  VF  +    V
Sbjct: 431  SAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMY-AKCGSIDDARLVFDGMCDRDV 489

Query: 81   CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
              WN M+ G ++         ++L M +  + PD+ T+  LL       A+E+  E+H H
Sbjct: 490  ISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKH 549

Query: 141  VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
             ++ G  S   V +A I  Y  CG +D AR +FD      V TWNAM  G  + +   E 
Sbjct: 550  AVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREA 609

Query: 201  RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
              LF +M+R+G +P + T + +LSA    + L+  K  H +  +  +V +L + NAL   
Sbjct: 610  LSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLV-DLRVGNALVHT 668

Query: 261  YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
            Y+ CG                                V  A+Q FD M ER+   WT MI
Sbjct: 669  YSKCG-------------------------------NVKYAKQVFDDMVERNVTTWTMMI 697

Query: 321  DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
             G  +     +A + F +M    I PD  T VSIL+ACA+ GALE  + V  +     + 
Sbjct: 698  GGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLV 757

Query: 381  NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            +D+ VGNAL+ MY KCG ++ A+ VF +M+ +D F+WT MI GLA +G G ++LD F +M
Sbjct: 758  SDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKM 817

Query: 441  LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
                  P+  +YV VL+AC+H G+VDEGR  F  MT  +GIEP   HY CMVDLLGRAG 
Sbjct: 818  KSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGL 877

Query: 501  LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
            L EA   I NMP++P+   WGALLGAC  + + EMAE AAK+ L+L P + + YVLL NI
Sbjct: 878  LEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNI 937

Query: 561  YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
            YAA  +W+    +R M+  +GI+K PG S IE++  +H FV GD SHP++KEIY +L+++
Sbjct: 938  YAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDL 997

Query: 621  TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
               LK  GY+PD   V  +  +E KE+A+  HSEKLA+ +GL+ +     IR+ KNLR+C
Sbjct: 998  IERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVC 1057

Query: 681  VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             DCH   K +S +  RE++ RD  RFHHFK G CSC DYW
Sbjct: 1058 SDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/503 (28%), Positives = 251/503 (49%), Gaps = 40/503 (7%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKL--VTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           KQ+H   IK G+  N  V NKL  V   C   G ++ A +VF K+ + ++ +W TMI GY
Sbjct: 138 KQVHVCIIKSGMEQNLYVANKLLRVYIRC---GRLQCARQVFDKLLKKNIYIWTTMIGGY 194

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           +     ++ + +Y  M +   +P+  T+  +LK     + +++GK++H H+++ GF S V
Sbjct: 195 AEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDV 254

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            V+ AL++ Y  CG ++ A+ IFD   + +V++W  M  G     +  E   LF +M+R+
Sbjct: 255 RVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQRE 314

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G +P S T V +L+A A    L+  K  H +     +  +L + NAL  MYA  G +  A
Sbjct: 315 GFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDA 374

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
             +F  +  +D+ SWT ++ G    G                               R +
Sbjct: 375 RVVFDGMTERDIFSWTVMIGGLAQHG-------------------------------RGQ 403

Query: 331 EALTLFREMQTSNIRPDEFTIVSIL--TACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           EA +LF +MQ +   P+  T +SIL  +A A+  ALE  + V  + ++    +D+ +GNA
Sbjct: 404 EAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNA 463

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LI MY KCG ++ A+ VF  M  +D  +W AM+ GLA NG G ++  +F QM +  ++PD
Sbjct: 464 LIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPD 523

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             TY+ +L+    T  ++   E      ++ G+  +       + +  R G +++A  + 
Sbjct: 524 STTYLSLLNTHGSTDALEWVNEVHKH-AVETGLISDFRVGSAFIHMYIRCGSIDDARLLF 582

Query: 509 KNMPMKPNSIVWGALLGACRVHR 531
             + ++ +   W A++G     R
Sbjct: 583 DKLSVR-HVTTWNAMIGGAAQQR 604



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 246/520 (47%), Gaps = 47/520 (9%)

Query: 73  RKIPRPSVCLWNTMIKGYSR----IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
           + +P   VC  N  + G +     + + K+ V +    ++  +  D++++  +L+   + 
Sbjct: 73  KYLPSVLVCA-NASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQ 131

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
             +   K++H  ++K G + +++V N L+  Y  CG +  AR +FD   K ++  W  M 
Sbjct: 132 EDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMI 191

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
            GY      ++  +++ +M ++   P  +T + +L AC    +L  GK+ H ++ +    
Sbjct: 192 GGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQ 251

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            ++ +E AL +MY  CG +  A  IF  +  ++VISWT ++ G  + G            
Sbjct: 252 SDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYG------------ 299

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                              R +EA  LF +MQ     P+ +T VSIL A A+ GALE  +
Sbjct: 300 -------------------RGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVK 340

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            V ++     +  D+ VGNAL+ MY K G ++ A+ VF  M  +D F+WT MI GLA +G
Sbjct: 341 EVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHG 400

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP---NE 485
            G ++  +F QM R   +P+  TY+ +L+A   + +       +  +  +H  E    ++
Sbjct: 401 RGQEAFSLFLQMQRNGCLPNLTTYLSILNA---SAIASTSALEWVKVVHKHAEEAGFISD 457

Query: 486 AHYG-CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
              G  ++ +  + G +++A  V   M  + + I W A++G    +     A     Q+ 
Sbjct: 458 LRIGNALIHMYAKCGSIDDARLVFDGMCDR-DVISWNAMMGGLAQNGCGHEAFTVFLQMQ 516

Query: 545 E--LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           +  L PD+   Y+ L N + + +  +   E+ +  ++ G+
Sbjct: 517 QEGLVPDS-TTYLSLLNTHGSTDALEWVNEVHKHAVETGL 555



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 87/213 (40%), Gaps = 8/213 (3%)

Query: 17  TPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           T  +S +  C S   L   K++H+  +  GL+++  V N LV    ++ G +  A  VF 
Sbjct: 726 TTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHM-YAKCGSIDDARSVFD 784

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
            +    V  W  MI G ++       +  ++ M     +P+ Y++  +L   +    V+ 
Sbjct: 785 DMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDE 844

Query: 134 GKELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMAR-GIFDVSYKDDVVTWNAMFSGY 191
           G+     + + +G + ++     ++      G ++ A   I ++  + D   W A+    
Sbjct: 845 GRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGAC 904

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
                 +     F   ER  + P S +  ++LS
Sbjct: 905 VTYGNLEMAE--FAAKERLKLKPKSASTYVLLS 935


>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 279/633 (44%), Positives = 360/633 (56%), Gaps = 110/633 (17%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCL--CGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H   +  G  S+  V   +I+  C    G+++ AR +FD     +   WN M  GY 
Sbjct: 36  KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYS 95

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           RV   +    ++ EM  +GV+P   T   +L    +   +  G+  H ++ +     N+ 
Sbjct: 96  RVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVF 155

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           ++NAL  +Y+  GE                               V +AR  FD+  + D
Sbjct: 156 VQNALIHLYSLSGE-------------------------------VSVARGVFDRSSKGD 184

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-K 371
            V W  MI GY R  +F E++ LF EM+   + P   T+VS+L+AC+ L  L +G+ V +
Sbjct: 185 VVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHR 244

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            Y DK                                M  +D  +WTAMI G        
Sbjct: 245 NYFDK--------------------------------MPERDFVSWTAMIDGYLQVNRFK 272

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR---------------------- 469
           + L +F +M  A+I PDE T V +L+AC H G ++ G                       
Sbjct: 273 EVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALI 332

Query: 470 -EYFADMTIQHGIE-----PNEAHYGCMVDLLGRA--GHLNEAL--------------EV 507
             YF    ++  I      P+         + G A  G+  EAL              EV
Sbjct: 333 DMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEV 392

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           IKNMP+KPNSIVWG+LLGACRVHRD EMAEMAA+QILEL+P+N AVYVLLCNIYAACNRW
Sbjct: 393 IKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRW 452

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           +   E+R++++DRGIKKTPGCS+IEMNG VHEFVAGD+ HPQ+KEIY KLDEM+ DLKF 
Sbjct: 453 EKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFA 512

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           GY PD SEVFLD+GEE+KE AVY+HSEKLA+AFGLISSGPGVTIRIVKNLRMCVDCH +A
Sbjct: 513 GYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVA 572

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KLVS VY+REVIVRD+TRFHHF+HGSCSCKDYW
Sbjct: 573 KLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 605



 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 203/469 (43%), Positives = 271/469 (57%), Gaps = 61/469 (13%)

Query: 1   MFSNSSISPPST---LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           M S +++SPP T      +TP +S I+TC+SM QLKQIHSQTI  GL++NP V  +++ F
Sbjct: 1   MISATTLSPPPTHLPSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAF 60

Query: 58  CCS-EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
           CC  E GDM+YA  VF  +P P+  +WN MIKGYSR+    + V +Y +ML+  V PD Y
Sbjct: 61  CCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEY 120

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           T+PFLLK FTRD AV+ G+ELH H++K GF S+VFVQNALI  Y L GEV +ARG+FD S
Sbjct: 121 TYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRS 180

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
            K DVVTWN M SGY R KQFDE+ KLF EMER  VLP+S+T+V VLSAC+KLKDL+VGK
Sbjct: 181 SKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGK 240

Query: 237 RAHR--------------------YVKECKIVPNLIL------------ENALTDMYAAC 264
           R HR                    Y++  +    L L            E  +  +  AC
Sbjct: 241 RVHRNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTAC 300

Query: 265 GEMGFALEIFGNIK--------NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
             +G ALE+   IK          D     A++  Y N G V+ A + F+ MP RD + W
Sbjct: 301 AHLG-ALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISW 359

Query: 317 TAMIDGYLRVNRF-REALTLFREMQTSNIRPDEF---------TIV--SILTACANLGAL 364
           TA+I G L +N +  EAL +F +M  ++I PDE          +IV  S+L AC      
Sbjct: 360 TAVIFG-LAINGYGEEALDMFSQMLKASITPDEVIKNMPVKPNSIVWGSLLGACRVHRDE 418

Query: 365 ELGEWVKTYIDKNKVKND-IFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           E+ E     I + + +N  ++V   L ++Y  C   EK   V + M+ +
Sbjct: 419 EMAEMAAQQILELEPENGAVYV--LLCNIYAACNRWEKLHEVRKLMMDR 465


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/544 (43%), Positives = 345/544 (63%), Gaps = 11/544 (2%)

Query: 184 WNAMFSGYKRVK----QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           WN +     R +     F     L+  M    VLP   T   +L +   +     G++ H
Sbjct: 27  WNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS---INTPHRGRQLH 83

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
             +    +  +  ++ +L +MY++CG   FA + F  I   D+ SW AI+      G + 
Sbjct: 84  AQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIH 143

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT---SNIRPDEFTIVSILT 356
           +AR+ FDQMPE++ + W+ MI GY+    ++ AL+LFR +QT   S +RP+EFT+ S+L+
Sbjct: 144 IARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLS 203

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKF 415
           ACA LGAL+ G+WV  YIDK  +K D+ +G +LIDMY KCG +E+A+ +F  +   KD  
Sbjct: 204 ACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVM 263

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
            W+AMI   +++G  ++ L++F++M+   + P+ VT+V VL AC H G+V EG EYF  M
Sbjct: 264 AWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRM 323

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535
             ++G+ P   HYGCMVDL  RAG + +A  V+K+MPM+P+ ++WGALL   R+H D E 
Sbjct: 324 MNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVET 383

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
            E+A  ++LELDP N + YVLL N+YA   RW   R LR ++  RGIKK PGCS++E++G
Sbjct: 384 CEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDG 443

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
           V+ EF AGD SHP+   +Y+ LDE+   L+  GY  +  EV LD+ EE KE A+  HSEK
Sbjct: 444 VIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEK 503

Query: 656 LAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715
           LA+A+  + + PG TIRIVKNLR+C DCH   K++S  ++RE+IVRD  RFHHFK+G CS
Sbjct: 504 LAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCS 563

Query: 716 CKDY 719
           CKDY
Sbjct: 564 CKDY 567



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 170/397 (42%), Gaps = 77/397 (19%)

Query: 76  PRPSVCLWNTMIKGYSRI----DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           P     +WN +I+  +R      +    + +YL M    V PD +TFPFLL+        
Sbjct: 20  PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINTP--- 76

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             G++LH  +L  G  +  FVQ +LI+ Y  CG    AR  FD   + D+ +WNA+    
Sbjct: 77  HRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHAN 136

Query: 192 KRVKQFDETRKLFGEMERKGVL----------------------------------PTSV 217
            +       RKLF +M  K V+                                  P   
Sbjct: 137 AKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEF 196

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T+  VLSACA+L  L  GK  H Y+ +  +  +++L  +L DMYA CG +  A  IF N+
Sbjct: 197 TMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNL 256

Query: 278 -KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
              KDV++W+A++T +   G  +                               E L LF
Sbjct: 257 GPEKDVMAWSAMITAFSMHGLSE-------------------------------ECLELF 285

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCK 395
             M    +RP+  T V++L AC + G +  G E+ K  +++  V   I     ++D+Y +
Sbjct: 286 ARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSR 345

Query: 396 CGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
            G +E A  V + M +  D   W A++ G  I  HGD
Sbjct: 346 AGRIEDAWNVVKSMPMEPDVMIWGALLNGARI--HGD 380



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 164/365 (44%), Gaps = 45/365 (12%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS---------------------- 60
           +++  + H+ +Q+H+Q + LGL  +P VQ  L+    S                      
Sbjct: 70  LQSINTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSW 129

Query: 61  --------EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIY--LDMLK-S 109
                   + G +  A K+F ++P  +V  W+ MI GY     +K  + ++  L  L+ S
Sbjct: 130 NAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGS 189

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
            +RP+ +T   +L    R  A++ GK +H ++ K G    V +  +LI  Y  CG ++ A
Sbjct: 190 QLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERA 249

Query: 170 RGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           + IFD +  + DV+ W+AM + +      +E  +LF  M   GV P +VT V VL AC  
Sbjct: 250 KCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVH 309

Query: 229 LKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWT 286
              +  G     R + E  + P +     + D+Y+  G +  A  +  ++    DV+ W 
Sbjct: 310 GGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWG 369

Query: 287 AIVTGYINRGQVDMARQYFDQMPERD------YVLWTAMIDGYLRVNRFREALTLFREMQ 340
           A++ G    G V+       ++ E D      YVL   + + Y ++ R+RE   L   M+
Sbjct: 370 ALLNGARIHGDVETCEIAITKLLELDPANSSAYVL---LSNVYAKLGRWREVRHLRDLME 426

Query: 341 TSNIR 345
              I+
Sbjct: 427 VRGIK 431


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/590 (41%), Positives = 369/590 (62%), Gaps = 4/590 (0%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM--ARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H  +L  G  +   +    +++  L    ++  +  + D S    + T+N+M   + 
Sbjct: 26  KQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNSMIRAHS 85

Query: 193 RVKQFDETRKLFGE-MERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           +      +   +   +   G L P + T   ++   A+L     G   H    +     +
Sbjct: 86  KSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEYD 145

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
             +++ L  MYA  G +     +F +I   D++  TA+V+     G V  AR+ FD+M  
Sbjct: 146 PHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSH 205

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           +D + W AMI GY++  + REAL+LF  MQ   ++ +E ++VS+L+AC++LGAL+ G W 
Sbjct: 206 KDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWA 265

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             YI++NK++  + +G ALIDMY KCG++ KA  VF  M  K+ +TW++ I GLA+NG G
Sbjct: 266 HAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAG 325

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           +K L++FS M + S+ P+E+T+V VL  C+  G+V+EGR++F  M+  +GIEP   HYGC
Sbjct: 326 EKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGC 385

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           MVDL GRAGHL+EAL  I +MP++P+   WGALL AC+++R+ EM E+A+++I+EL+  N
Sbjct: 386 MVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKN 445

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              YVLL NIYA    WD    +RQ +  +G++K PGCS+IE+ G VHEF  GDKSHP+ 
Sbjct: 446 HGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRY 505

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
            EI + L E++  LK  GY+ + + VF D+ EE+KE A+  HSEK+A+AFGLIS  P V 
Sbjct: 506 AEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVP 565

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IRIVKNLR+C DCH   K++S  ++RE++VRD+ RFHHF+ G CSCK YW
Sbjct: 566 IRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 209/442 (47%), Gaps = 71/442 (16%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIP 76
           P IS +E C ++ +LKQIH+Q +  GLL +P +  + V +   +   ++ Y+ +V     
Sbjct: 11  PTISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQ 70

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRDIAVEFG 134
            P++  +N+MI+ +S+  +       Y  +L S   + PDNYTF FL++   + +A   G
Sbjct: 71  NPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTG 130

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYC--------------LC----------------- 163
             +H   +K+GF+    VQ+ LI  Y               +C                 
Sbjct: 131 SSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKM 190

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G+V  AR +FD     D + WNAM SGY +  Q  E   LF  M+R+GV    V++V VL
Sbjct: 191 GDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVL 250

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           SAC+ L  LD G+ AH Y++  K+   L L  AL DMYA CG M  A+E+F  +K K+V 
Sbjct: 251 SACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVY 310

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           +W++ + G    G  +                               + L LF  M+  +
Sbjct: 311 TWSSAIGGLAMNGAGE-------------------------------KCLELFSLMKQDS 339

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV---KNDIFVGNALIDMYCKCGDVE 400
           ++P+E T VS+L  C+ +G +E G   K +   +KV   +  +     ++D+Y + G ++
Sbjct: 340 VQPNEITFVSVLRGCSVVGLVEEGR--KHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLD 397

Query: 401 KAQRVFREM-LRKDKFTWTAMI 421
           +A      M +R     W A++
Sbjct: 398 EALNFINSMPVRPHVGAWGALL 419



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/342 (19%), Positives = 145/342 (42%), Gaps = 41/342 (11%)

Query: 35  IHSQTIKLGLLTNPTVQNKLV-----------------TFC-------------CSEKGD 64
           +H   +K G   +P VQ+ L+                 + C             C++ GD
Sbjct: 133 VHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGD 192

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + +A K+F K+       WN MI GY +    +  + ++  M +  V+ +  +   +L  
Sbjct: 193 VGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSA 252

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
            +   A++ G+  H ++ +     ++ +  ALI  Y  CG ++ A  +F    + +V TW
Sbjct: 253 CSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTW 312

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           ++   G       ++  +LF  M++  V P  +T V VL  C+ +  ++ G++    + +
Sbjct: 313 SSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSK 372

Query: 245 C-KIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTG---YINRGQVD 299
              I P L     + D+Y   G +  AL    ++  +  V +W A++     Y N    +
Sbjct: 373 VYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGE 432

Query: 300 MARQYFDQMPERDYVLWTAMIDGYL------RVNRFREALTL 335
           +A +   ++  +++  +  + + Y       RV+  R+ + +
Sbjct: 433 LASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNV 474


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/592 (41%), Positives = 361/592 (60%), Gaps = 33/592 (5%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF------DVSYKDDVVTWNAMFS 189
           ++H  +LK G   +  V     +T      V  A  +             D   +N +  
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 190 GYKRVKQFD-ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
            + +         + +  M R  V P   T   VL ACA +  L++G   H  + +    
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFE 259

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            +  + N L  MY  C + G                         + G V  A++ FD+ 
Sbjct: 260 EDPHVRNTLVHMYCCCCQDG-------------------------SSGPVS-AKKVFDES 293

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
           P +D V W+AMI GY R      A+TLFREMQ + + PDE T+VS+L+ACA+LGALELG+
Sbjct: 294 PVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGK 353

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           W+++YI++  +   + + NALIDM+ KCGDV++A +VFREM  +   +WT+MIVGLA++G
Sbjct: 354 WLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHG 413

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
            G +++ +F +M+   + PD+V ++GVLSAC+H+G+VD+G  YF  M     I P   HY
Sbjct: 414 RGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHY 473

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
           GCMVD+L RAG +NEALE ++ MP++PN ++W +++ AC    + ++ E  AK+++  +P
Sbjct: 474 GCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREP 533

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
            +E+ YVLL NIYA   RW+   ++R+M+  +G++K PG +MIEMN  ++EFVAGDKSH 
Sbjct: 534 SHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHD 593

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPG 668
           Q KEIY  ++EM  ++K  GY+P  S+V LD+ EEDKE A+Y+HSEKLA+AF L+S+ PG
Sbjct: 594 QYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPG 653

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             IRIVKNLR+C DCH   K +S VY+RE++VRD+ RFHHFK+G CSC D+W
Sbjct: 654 TPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 163/368 (44%), Gaps = 37/368 (10%)

Query: 2   FSNSSISPPSTL----TQETPLISP--------IETCESMHQLK---QIHSQTIKLGLLT 46
           F+ ++ S P  L    T     +SP        ++ C  M +L+    +H+  +K G   
Sbjct: 201 FAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEE 260

Query: 47  NPTVQNKLVTF--CCSEKGDMK--YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLI 102
           +P V+N LV    CC + G      A KVF + P      W+ MI GY+R  +    V +
Sbjct: 261 DPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTL 320

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           + +M  + V PD  T   +L       A+E GK L  ++ +     SV + NALI  +  
Sbjct: 321 FREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAK 380

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
           CG+VD A  +F       +V+W +M  G     +  E   +F EM  +GV P  V  + V
Sbjct: 381 CGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGV 440

Query: 223 LSACAKLKDLDVGKRAHRYVKECK----IVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           LSAC+    +D G   H Y    +    IVP +     + DM +  G +  ALE    + 
Sbjct: 441 LSACSHSGLVDKG---HYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMP 497

Query: 279 -NKDVISWTAIVTGYINRGQVDM----ARQYFDQMP--ERDYVLWTAMIDGYLRVNRFRE 331
              + + W +IVT    RG++ +    A++   + P  E +YVL + +    LR     E
Sbjct: 498 VEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLR----WE 553

Query: 332 ALTLFREM 339
             T  REM
Sbjct: 554 KKTKVREM 561


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/654 (38%), Positives = 386/654 (59%), Gaps = 41/654 (6%)

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           R  V  WN++I   +R       +  +  M K D++P+  TFP  +K  +    +  GK+
Sbjct: 44  RTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQ 103

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
            H   L FGF+S +FV +ALI  Y  CG++  AR +FD   + ++VTW ++ +GY +   
Sbjct: 104 AHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDD 163

Query: 197 FDETRKLF---------GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
             E   +F         G  E  G    SV ++ VLSAC+++ +  V +  H    +  +
Sbjct: 164 AHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGL 223

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
              + +EN L D YA CGE                               V ++R+ FD 
Sbjct: 224 DKVMGVENTLLDAYAKCGE-------------------------------VSLSRKVFDD 252

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALEL 366
           M E+D V W +MI  Y +     +A  +F  M +    + +E T+ ++L ACA+ GAL +
Sbjct: 253 MAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRV 312

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G  +   + K    N++ +  ++IDMYCKCG  E A+  F  M  K+  +WTAMI G  +
Sbjct: 313 GMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGM 372

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G   ++LD+F QM+ A + P+ +T++ VL+AC+H G ++EG  +F  M+ ++ +EP   
Sbjct: 373 HGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVE 432

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HYGCMVDLLGRAG++ EA  +IK+M ++ + ++WG+LL ACR+H+D E+AE++A+++ +L
Sbjct: 433 HYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKL 492

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           DP N   YVLL NIYA   RW +   +R ++ DRG+ K PG S++E+ G VH F+ GDK 
Sbjct: 493 DPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKE 552

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           HPQ ++IY  L+E++  L+  GY+P+++ V  DV EE+KE  V  HSEKLA+AFG+++S 
Sbjct: 553 HPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSI 612

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           PG TI ++KNLR+C DCH + KL+S +  RE+IVRD  RFHHFK G CSC DYW
Sbjct: 613 PGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 205/451 (45%), Gaps = 49/451 (10%)

Query: 22  PIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            I++C ++  L   KQ H Q +  G  ++  V + L+    S+ G +  A  +F +IPR 
Sbjct: 88  AIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMY-SKCGKLSNARVLFDEIPRR 146

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDML--KSD-------VRPDNYTFPFLLKGFTRDI 129
           ++  W ++I GY + D     ++++ + L  KS+          D+     +L   +R  
Sbjct: 147 NIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVS 206

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
                + +H   +K G D  + V+N L+  Y  CGEV ++R +FD   + DVV+WN+M +
Sbjct: 207 NKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIA 266

Query: 190 GYKRVKQFDETRKLF-GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
            Y +     +  ++F G ++  G     VT+  +L ACA    L VG   H  V +   V
Sbjct: 267 VYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYV 326

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            N+I+  ++ DMY  CG+   A   F  +K K+V SWTA++ GY   G            
Sbjct: 327 NNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFA---------- 376

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG- 367
                                REAL +F +M  + ++P+  T +S+L AC++ G LE G 
Sbjct: 377 ---------------------REALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGW 415

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAI 426
            W      +  V+  +     ++D+  + G +++A  + + M +R+D   W +++    I
Sbjct: 416 RWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRI 475

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
             H D  L   S      + P    Y  +L+
Sbjct: 476 --HKDVELAEISARELFKLDPSNCGYYVLLA 504


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/663 (37%), Positives = 391/663 (58%), Gaps = 35/663 (5%)

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
            GD++ A KVF ++P  +V  W  MI  + ++   ++ V ++LDM+ S   PD +T   +
Sbjct: 92  NGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGV 151

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC---GEVDMARGIFDVSYK 178
           +        +  G++ HC V+K G D  V V  +L+  Y  C   G VD AR +FD    
Sbjct: 152 VSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPV 211

Query: 179 DDVVTWNAMFSGYKRVKQFD-ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
            +V++W A+ +GY +    D E  +LF EM +  V P   T   VL ACA L D+ +G++
Sbjct: 212 HNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQ 271

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            +  V + ++     + N+L  MY+ CG M                              
Sbjct: 272 VYALVVKMRLASINCVGNSLISMYSRCGNM------------------------------ 301

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
            + AR+ FD + E++ V +  +++ Y +     EA  LF E++ +    + FT  S+L+ 
Sbjct: 302 -ENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSG 360

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
            +++GA+  GE + + I K+  K+++ + NALI MY +CG++E A +VF EM   +  +W
Sbjct: 361 ASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISW 420

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           T+MI G A +G   ++L+ F +ML A + P+EVTY+ VLSAC+H G++ EG ++F  M +
Sbjct: 421 TSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKV 480

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
           +HGI P   HY C+VDLLGR+GHL EA+E++ +MP K +++V    LGACRVH + ++ +
Sbjct: 481 EHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGK 540

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
            AA+ ILE DP + A Y+LL N++A+  +W+   E+R+ + +R + K  GCS IE+   V
Sbjct: 541 HAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKV 600

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLA 657
           H+F  GD SHPQ +EIY +LD++   +K +GY+P    V  DV EE KE+ ++QHSEK+A
Sbjct: 601 HKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIA 660

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           +A+G IS+     IR+ KNLR+C DCH   K  S+V  +E+++RD  RFHHFK G+CSC 
Sbjct: 661 VAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCN 720

Query: 718 DYW 720
           DYW
Sbjct: 721 DYW 723



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/510 (25%), Positives = 245/510 (48%), Gaps = 45/510 (8%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           W+ +I  Y+  +     +  + DML+    P+ Y F  + +  +    +  GK +   +L
Sbjct: 10  WSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLL 69

Query: 143 KFG-FDSSVFVQNALISTYCLC-GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           K G F+S V V  ALI  +    G+++ A  +FD     +VVTW  M + ++++    + 
Sbjct: 70  KTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDA 129

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             LF +M   G +P   T+  V+SACA++  L +G++ H  V +  +  ++ +  +L DM
Sbjct: 130 VDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDM 189

Query: 261 YAAC---GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
           YA C   G +  A ++F  +   +V+SWTAI+TGY+  G  D                  
Sbjct: 190 YAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCD------------------ 231

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                       REA+ LF EM    ++P+ FT  S+L ACANL  + LGE V   + K 
Sbjct: 232 ------------REAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKM 279

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
           ++ +   VGN+LI MY +CG++E A++ F  +  K+  ++  ++   A + + +++ ++F
Sbjct: 280 RLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELF 339

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           +++  A    +  T+  +LS  +  G + +G +  + + ++ G + N      ++ +  R
Sbjct: 340 NEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRI-LKSGFKSNLHICNALISMYSR 398

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD-PDNEAVYVL 556
            G++  A +V   M    N I W +++     H  A  A     ++LE     NE  Y+ 
Sbjct: 399 CGNIEAAFQVFNEMG-DGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIA 457

Query: 557 LCNIYAACNR----WDNFRELRQMILDRGI 582
              + +AC+      +  +  + M ++ GI
Sbjct: 458 ---VLSACSHVGLISEGLKHFKSMKVEHGI 484



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 159/333 (47%), Gaps = 38/333 (11%)

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           K D+V+W+A+ S Y   ++  E    F +M   G  P       V  AC+  +++ +GK 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 238 AHRY-VKECKIVPNLILENALTDMYA-ACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
              + +K      ++ +  AL DM+    G++  A ++F  + +++V++WT ++T +   
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G                                 R+A+ LF +M  S   PD FT+  ++
Sbjct: 124 GFS-------------------------------RDAVDLFLDMVLSGYVPDRFTLSGVV 152

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC---GDVEKAQRVFREMLRK 412
           +ACA +G L LG      + K+ +  D+ VG +L+DMY KC   G V+ A++VF  M   
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH 212

Query: 413 DKFTWTAMIVGLAINGHGDK-SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           +  +WTA+I G   +G  D+ ++++F +M++  + P+  T+  VL AC +   +  G + 
Sbjct: 213 NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQV 272

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           +A + ++  +         ++ +  R G++  A
Sbjct: 273 YA-LVVKMRLASINCVGNSLISMYSRCGNMENA 304



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 118/220 (53%), Gaps = 7/220 (3%)

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           +RD V W+A+I  Y    +  EA++ F +M      P+E+    +  AC+N   + LG+ 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 370 VKTYIDKNK-VKNDIFVGNALIDMYCKC-GDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           +  ++ K    ++D+ VG ALIDM+ K  GD+E A +VF  M  ++  TWT MI      
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G    ++D+F  M+ +  +PD  T  GV+SAC   G++  GR++   + ++ G++ +   
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHC-LVMKSGLDLDVCV 182

Query: 488 YGCMVDLLGRA---GHLNEALEVIKNMPMKPNSIVWGALL 524
              +VD+  +    G +++A +V   MP+  N + W A++
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVH-NVMSWTAII 221


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/592 (40%), Positives = 371/592 (62%), Gaps = 40/592 (6%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG-IFDVSYKDDVVTWNA-MFSGYKR 193
           +LH H++K GF ++  V     S       +  A   +F V   +D   ++A +FS   R
Sbjct: 25  QLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSV---EDARVYDAFLFSTIIR 81

Query: 194 VKQFDETRK-----LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
                   K      +  M   G+ P       VL ACA L+DL++GK  H  + +    
Sbjct: 82  AYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFD 141

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            ++ ++N +  MY  C                               G ++ AR+ FD+M
Sbjct: 142 DDIFVQNTMVHMYCCCS------------------------------GGMEFARKLFDEM 171

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
           P+ D V WTAMI GY R+ +   A+ LFR+MQ + + PD+ T+VS+L+AC +LGALELG+
Sbjct: 172 PKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGK 231

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           W+++YI+K +V   + + NAL+DM+ KCGDV+KA  +FR M ++   +WT++IVGLA++G
Sbjct: 232 WIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHG 291

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
            G +++ +F +M  + ++P+++ ++G+LSAC+H+G+V+ GR+YF++MT Q GI P   HY
Sbjct: 292 RGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHY 351

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
           GCMVDLL RAG + EALE ++ MP++PN I+W  L+ ACRVH + ++ E  +KQ++  +P
Sbjct: 352 GCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEP 411

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
            +E+ YVLL NIY     W+   ++R  +  +GI+K PG +MIE++  +HEF+ GD+SH 
Sbjct: 412 MHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHN 471

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPG 668
           Q  EI   ++EM  ++K  GY P  +EVFLD+ EEDKE A+ +HSEKLA+AF L+++ PG
Sbjct: 472 QYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPG 531

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             IRI KNLR+C DCH  +K +S +Y+RE+++RD++RFHHF+ G CSC D+W
Sbjct: 532 SPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 128/434 (29%), Positives = 213/434 (49%), Gaps = 39/434 (8%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           E P +  ++ C ++ +L Q+H+  IKLG   NP V  K  T   S    + YA  +   +
Sbjct: 7   EQPCLDILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKF-TSASSNLDAIPYAMSLVFSV 65

Query: 76  PRPSV---CLWNTMIKGYSRIDSHKNGVLIYLD-MLKSDVRPDNYTFPFLLKGFTRDIAV 131
               V    L++T+I+ Y+     K+  + Y + ML   + P+ Y FPF+LK       +
Sbjct: 66  EDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDL 125

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLC-GEVDMARGIFDVSYKDDVVTWNAMFSG 190
             GK +H  ++KFGFD  +FVQN ++  YC C G ++ AR +FD   K D VTW AM  G
Sbjct: 126 NLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGG 185

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y R+ Q      LF +M+  GV P  VT+V VLSAC  L  L++GK    Y+++ +++  
Sbjct: 186 YARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKT 245

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           + L NAL DM+A CG++  AL +F N+  + ++SWT+++ G    G              
Sbjct: 246 VELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHG-------------- 291

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EW 369
                            R  EA++LF EM+ S + P++   + +L+AC++ G +E G ++
Sbjct: 292 -----------------RGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQY 334

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
                 +  +   I     ++D+  + G V +A      M +  +   W  +I    ++G
Sbjct: 335 FSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHG 394

Query: 429 HGDKSLDMFSQMLR 442
                  +  Q++R
Sbjct: 395 ELKLGESISKQLIR 408



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 143/306 (46%), Gaps = 11/306 (3%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           ++ C  +  L   K +H   +K G   +  VQN +V   C   G M++A K+F ++P+  
Sbjct: 116 LKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLD 175

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
              W  MI GY+R+      V ++  M  + V PD+ T   +L   T   A+E GK +  
Sbjct: 176 PVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIES 235

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           ++ K     +V + NAL+  +  CG+VD A G+F    K  +V+W ++  G     +  E
Sbjct: 236 YIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLE 295

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNLILENALT 258
              LF EM+  G++P  +  + +LSAC+    ++ G++      ++  IVP +     + 
Sbjct: 296 AVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMV 355

Query: 259 DMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQ------MPER 311
           D+ +  G +  ALE    +    + I W  +++     G++ +      Q      M E 
Sbjct: 356 DLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHES 415

Query: 312 DYVLWT 317
           +YVL +
Sbjct: 416 NYVLLS 421


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/653 (37%), Positives = 388/653 (59%), Gaps = 32/653 (4%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A KVF ++P   +  WNT++ GYS+    +  + +   M + +++P   T   +L   + 
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSA 248

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
              +  GKE+H + ++ GFDS V +  AL+  Y  CG +  AR +FD   + +VV+WN+M
Sbjct: 249 LRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSM 308

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
              Y + +   E   +F +M  +GV PT V+++  L ACA L DL+ G+  H+   E ++
Sbjct: 309 IDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELEL 368

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             N+ + N+L  MY  C E+  A  +FG ++++ ++SW A++ G+   G+   A  YF Q
Sbjct: 369 DRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQ 428

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                          MQ   ++PD FT VS++TA A L      
Sbjct: 429 -------------------------------MQARTVKPDTFTYVSVITAIAELSITHHA 457

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           +W+   + +N +  ++FV  AL+DMY KCG +  A+ +F  M  +   TW AMI G   +
Sbjct: 458 KWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTH 517

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G G  +L++F +M + +I P+ VT++ V+SAC+H+G+V+ G + F  M   + IEP+  H
Sbjct: 518 GIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDH 577

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           YG MVDLLGRAG LNEA + I  MP+KP   V+GA+LGAC++H++   AE  A+++ EL+
Sbjct: 578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELN 637

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P++   +VLL NIY A + W+   ++R  +L +G++KTPGCSM+E+   VH F +G  +H
Sbjct: 638 PEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAH 697

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P +K+IY  L+++   +K  GY+PD + + L + ++ KE+ +  HSEKLA++FGL+++  
Sbjct: 698 PSSKKIYAFLEKLICQIKEAGYVPD-TNLILGLEDDVKEQLLSSHSEKLAISFGLLNTTA 756

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G TI + KNLR+C DCH   K +S+V  RE+IVRD  RFHHFK+G+CSC DYW
Sbjct: 757 GTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/666 (37%), Positives = 382/666 (57%), Gaps = 5/666 (0%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTF 118
           S  GD++ A  +F KIP+P +  W  +I   ++       +  Y D   K+ V PD    
Sbjct: 22  SNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLL 81

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             + K       V   K +H   ++FGF S V + NALI  Y  C   + AR +F+    
Sbjct: 82  LSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPF 141

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            DV++W +M S Y       E    F +M   G  P SVT+  +L AC  LKDL  G+  
Sbjct: 142 RDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREV 201

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H +V    +  N+ + +AL +MYA+C  +  A  +F ++  +D +SW  ++T Y    + 
Sbjct: 202 HGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKEC 261

Query: 299 DMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
           +     F +M       +Y  W A+I G ++  R  +AL +   MQ S  +P++ TI S+
Sbjct: 262 EKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSV 321

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           L AC NL +L  G+ +  YI ++    D+    AL+ MY KCGD+E ++RVF  M ++D 
Sbjct: 322 LPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDT 381

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +W  MI+  +++G+G+++L +F +M+ + + P+ VT+ GVLS C+H+ +VDEG   F  
Sbjct: 382 VSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDS 441

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           M+  H +EP+  H+ CMVD+L RAG L EA E IK MP++P +  WGALLG CRV+++ E
Sbjct: 442 MSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVE 501

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           +  +AA ++ E++ DN   YVLL NI  +   W    E R+++ DRG+ K PGCS I++ 
Sbjct: 502 LGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVR 561

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
             VH FV GDKS+ Q+ EIY  LD M   ++  GY+P+   V  DV +E+KE  +  HSE
Sbjct: 562 NRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSE 621

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           KLA+AFG+++     +IR+ KNLR+C DCH   K ++ +   ++IVRD  RFHHF+ G C
Sbjct: 622 KLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLC 681

Query: 715 SCKDYW 720
           SC+D+W
Sbjct: 682 SCQDFW 687



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 154/331 (46%), Gaps = 33/331 (9%)

Query: 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLP 214
            I  Y   G++  AR +FD   + D+ TW  + S   +  +  E  + + +   K  V P
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
             + ++ V  ACA L+D+   KR H          +++L NAL DMY  C     A  +F
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
             +  +DVISWT++ + Y+N G +                               REAL 
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLL-------------------------------REALG 165

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
            FR+M  +  RP+  T+ SIL AC +L  L+ G  V  ++ +N +  ++FV +AL++MY 
Sbjct: 166 AFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYA 225

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
            C  + +AQ VF  M R+D  +W  +I    +N   +K L +F +M+   +  +  ++  
Sbjct: 226 SCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNA 285

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           V+  C   G  ++  E  + M    G +PN+
Sbjct: 286 VIGGCMQNGRTEKALEVLSRMQ-NSGFKPNQ 315



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 3/244 (1%)

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRPDEFT 350
           Y N G +  AR  FD++P+ D   WT +I    +  R  EA+  + + +  N + PD+  
Sbjct: 21  YSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLL 80

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           ++S+  ACA+L  +   + V     +    +D+ +GNALIDMY KC   E A+ VF  M 
Sbjct: 81  LLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMP 140

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            +D  +WT+M       G   ++L  F +M      P+ VT   +L ACT    +  GRE
Sbjct: 141 FRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGRE 200

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
                 +++G+  N      +V++      + +A  V  +M  + +++ W  L+ A  ++
Sbjct: 201 VHG-FVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRR-DTVSWNVLITAYFLN 258

Query: 531 RDAE 534
           ++ E
Sbjct: 259 KECE 262



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 134/334 (40%), Gaps = 57/334 (17%)

Query: 4   NSSISPPS-TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           NS   P   T+T   P  + +E   S+   KQIH    +     + T    LV F  ++ 
Sbjct: 308 NSGFKPNQITITSVLPACTNLE---SLRGGKQIHGYIFRHWFFQDLTTTTALV-FMYAKC 363

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD++ + +VF  + +     WNTMI   S   + +  +L++ +M+ S VRP++ TF  +L
Sbjct: 364 GDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVL 423

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
            G +    V+ G  +        FDS                   M+R   D S + D  
Sbjct: 424 SGCSHSRLVDEGLLI--------FDS-------------------MSR---DHSVEPDAD 453

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK-RAHRY 241
             + M     R  + +E  +   +M    + PT+     +L  C   K++++G+  A+R 
Sbjct: 454 HHSCMVDVLSRAGRLEEAYEFIKKMP---IEPTAGAWGALLGGCRVYKNVELGRIAANRL 510

Query: 242 VKECKIVPN--LILENALTD--MYAACGEMGFALEIFGNIKNKDVISWTAI-------VT 290
            +     P   ++L N L    +++   E    +   G  KN    SW  +       V 
Sbjct: 511 FEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGC-SWIQVRNRVHTFVV 569

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
           G  +  Q D   ++ D M E+        I GYL
Sbjct: 570 GDKSNDQSDEIYRFLDYMGEK------MRIAGYL 597



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 85/212 (40%), Gaps = 37/212 (17%)

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-P 447
            I +Y   GD+++A+ +F ++ + D  TWT +I  L  +G   +++  ++     + + P
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR---------- 497
           D++  + V  AC     V   +    D  I+ G   +      ++D+ G+          
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHED-AIRFGFCSDVLLGNALIDMYGKCRCSEGARLV 135

Query: 498 ---------------------AGHLNEALEVIKNMPM---KPNSIVWGALLGACRVHRDA 533
                                 G L EAL   + M +   +PNS+   ++L AC   +D 
Sbjct: 136 FEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDL 195

Query: 534 EMA-EMAAKQILELDPDNEAVYVLLCNIYAAC 564
           +   E+    +      N  V   L N+YA+C
Sbjct: 196 KSGREVHGFVVRNGMGGNVFVSSALVNMYASC 227


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/692 (38%), Positives = 392/692 (56%), Gaps = 36/692 (5%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            +QIH+  IK        V N L+    S+ G +  A K F   P   +  WNTMI  Y++
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMY-SKAGVVYAAEKTFINSPELDLISWNTMISSYAQ 972

Query: 93   IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF---GKELHCHVLKFGFDSS 149
             +     +  + D+L+  ++PD +T   +L+  +     E+   G ++H + +K G  + 
Sbjct: 973  NNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIND 1032

Query: 150  VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
             FV  ALI  Y   G++D A  +    Y  D+ +WNA+  GY +  +  +  + F  M  
Sbjct: 1033 SFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE 1092

Query: 210  KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
             G+    +T+   + A   L +L  GK+   Y  +     +L + + + DMY  CG+M  
Sbjct: 1093 MGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPN 1152

Query: 270  ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
            ALE+F                G I+R                D V WT MI GY+     
Sbjct: 1153 ALELF----------------GEISR---------------PDEVAWTTMISGYIENGDE 1181

Query: 330  REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
              AL+++  M+ S ++PDE+T  +++ A + L ALE G+ +   + K     D FVG +L
Sbjct: 1182 DHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSL 1241

Query: 390  IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
            +DMYCKCG V+ A RVFR+M  +    W AM++GLA +GH D++L++F  M    I PD+
Sbjct: 1242 VDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDK 1301

Query: 450  VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
            VT++GVLSAC+H+G+  E  +YF  M   +GI P   HY C+VD LGRAG + EA  VI 
Sbjct: 1302 VTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIA 1361

Query: 510  NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
            +MP K ++ ++ ALLGACR   DAE A+  A ++L LDP + + YVLL NIYAA  +WD+
Sbjct: 1362 SMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDD 1421

Query: 570  FRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG- 628
              + R M+  + +KK PG S I++   VH FV  D+SHPQ   IY K++++   ++  G 
Sbjct: 1422 VTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGS 1481

Query: 629  YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
            Y+PD     LDV EE+KERA+Y HSEKLA+AFGLIS+ P  TIR++KNLR+C DCH   K
Sbjct: 1482 YVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIK 1541

Query: 689  LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             +S +  RE+++RD  RFHHF++G+CSC DYW
Sbjct: 1542 CISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 143/628 (22%), Positives = 259/628 (41%), Gaps = 81/628 (12%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            K+ H++ +  G L +  + N L+T   S+ G +  A +VF K     +  WN+++  Y++
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMY-SKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 93   I--DSHKN--------GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
                S++N        G+L       + +         LL GF     V+  + +H + +
Sbjct: 690  FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGF-----VQVSETVHGYAV 744

Query: 143  KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
            K GF+  +FV  AL++ YC  G V  AR +FD   + D V WN M   Y      DE  +
Sbjct: 745  KIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALR 804

Query: 203  LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-----KIVP-----NLI 252
             F    R G  P    +  V+       + DV     R+ ++      K+ P     N+ 
Sbjct: 805  FFSAFHRSGFXPDFSNLHCVIGGV----NSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIF 860

Query: 253  LENALTDMYAACGEMGFALEIFGNIKNK----DVISWTAIVTGYINRGQVDMARQY---- 304
              N     +   G++  A++ F  +       D ++   I++  +    +D+  Q     
Sbjct: 861  AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920

Query: 305  -------------------------------FDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                                           F   PE D + W  MI  Y + N   EA+
Sbjct: 921  IKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 334  TLFREMQTSNIRPDEFTIVSILTACANLGALE---LGEWVKTYIDKNKVKNDIFVGNALI 390
              FR++    ++PD+FT+ S+L AC+     E   LG  V  Y  K  + ND FV  ALI
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALI 1040

Query: 391  DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            D+Y K G +++A+ +       D  +W A++ G   +    K+L+ FS M    I  DE+
Sbjct: 1041 DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEI 1100

Query: 451  TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
            T    + A      + +G++  A   I+ G   +      ++D+  + G +  ALE+   
Sbjct: 1101 TLATAIKASGCLINLKQGKQIQA-YAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGE 1159

Query: 511  MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD---PDNEAVYVLLCNIYAACNRW 567
            +  +P+ + W  ++     + D + A ++   ++ +    PD E  +  L    +     
Sbjct: 1160 IS-RPDEVAWTTMISGYIENGDEDHA-LSVYHLMRVSGVQPD-EYTFATLIKASSCLTAL 1216

Query: 568  DNFRELRQMI--LDRGIKKTPGCSMIEM 593
            +  +++   +  LD  +    G S+++M
Sbjct: 1217 EQGKQIHANVVKLDYSLDHFVGTSLVDM 1244



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 180/430 (41%), Gaps = 60/430 (13%)

Query: 131  VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
            ++ GK  H  ++  G     ++ N LI+ Y  CG +  AR +FD S   D+VTWN++ + 
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 191  YKRVKQFD-----ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
            Y +          E  +LFG +   G   T +T+  +L  C     + V +  H Y  + 
Sbjct: 687  YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 246  KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
                +L +  AL ++Y   G +G A  +F  +  +D + W  ++  Y+     D A ++F
Sbjct: 747  GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 306  DQM------PE--------------------------RDYVL-------------WTAMI 320
                     P+                          + Y +             W   +
Sbjct: 807  SAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKL 866

Query: 321  DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
              +L   +   A+  F+ +  S I  D  T+V IL+A      L+LGE +   + K+   
Sbjct: 867  TEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA 926

Query: 381  NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
              + V N+L++MY K G V  A++ F      D  +W  MI   A N    +++  F  +
Sbjct: 927  PVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDL 986

Query: 441  LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH------GIEPNEAHYGCMVDL 494
            LR  + PD+ T   VL AC+ TG  DEG EYF   +  H      GI  +      ++DL
Sbjct: 987  LRDGLKPDQFTLASVLRACS-TG--DEG-EYFTLGSQVHVYAIKCGIINDSFVSTALIDL 1042

Query: 495  LGRAGHLNEA 504
              + G ++EA
Sbjct: 1043 YSKGGKMDEA 1052



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 136/286 (47%), Gaps = 9/286 (3%)

Query: 28   SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
            ++ Q KQI +  IKLG   +  V + ++     + GDM  A ++F +I RP    W TMI
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYI-KCGDMPNALELFGEISRPDEVAWTTMI 1172

Query: 88   KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
             GY       + + +Y  M  S V+PD YTF  L+K  +   A+E GK++H +V+K  + 
Sbjct: 1173 SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232

Query: 148  SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
               FV  +L+  YC CG V  A  +F       VV WNAM  G  +    DE   LF  M
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 208  ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY----VKECKIVPNLILENALTDMYAA 263
            +  G+ P  VT + VLSAC+      +   A++Y     K   I P +   + L D    
Sbjct: 1293 QSNGIQPDKVTFIGVLSACSH---SGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGR 1349

Query: 264  CGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDMARQYFDQM 308
             G +  A  +  ++  K   S + A++     +G  + A++  D++
Sbjct: 1350 AGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKL 1395



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 26/220 (11%)

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           + DL +GKRAH  +     +P+  L N L  MY+ CG +  A ++F    ++D+++W +I
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           +  Y          Q+ D   E        +++G+           L RE   S  R   
Sbjct: 684 LAAYA---------QFADSSYEN-------VLEGF-------RLFGLLREFGFSITR--- 717

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T+  +L  C   G +++ E V  Y  K   + D+FV  AL+++YCK G V +A+ +F +
Sbjct: 718 LTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDK 777

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           M  +D   W  M+     N   D++L  FS   R+   PD
Sbjct: 778 MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 19   LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            LI       ++ Q KQIH+  +KL    +  V   LV   C + G ++ A +VFRK+   
Sbjct: 1206 LIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYC-KCGSVQDAYRVFRKMDVR 1264

Query: 79   SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
             V  WN M+ G ++       + ++  M  + ++PD  TF
Sbjct: 1265 KVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTF 1304



 Score = 40.4 bits (93), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 11/170 (6%)

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           L+LG+     I  +    D ++ N LI MY KCG +  A++VF +   +D  TW +++  
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 424 LAINGHGDKSLD-------MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
            A     D S +       +F  +         +T   +L  C  +G V +  E      
Sbjct: 687 YA--QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV-QVSETVHGYA 743

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           ++ G E +    G +V++  + G + +A  +   MP + ++++W  +L A
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVMLKA 792


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/692 (38%), Positives = 392/692 (56%), Gaps = 36/692 (5%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            +QIH+  IK        V N L+    S+ G +  A K F   P   +  WNTMI  Y++
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMY-SKAGVVYAAEKTFINSPELDLISWNTMISSYAQ 972

Query: 93   IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF---GKELHCHVLKFGFDSS 149
             +     +  + D+L+  ++PD +T   +L+  +     E+   G ++H + +K G  + 
Sbjct: 973  NNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIND 1032

Query: 150  VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
             FV  ALI  Y   G++D A  +    Y  D+ +WNA+  GY +  +  +  + F  M  
Sbjct: 1033 SFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE 1092

Query: 210  KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
             G+    +T+   + A   L +L  GK+   Y  +     +L + + + DMY  CG+M  
Sbjct: 1093 MGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPN 1152

Query: 270  ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
            ALE+F                G I+R                D V WT MI GY+     
Sbjct: 1153 ALELF----------------GEISR---------------PDEVAWTTMISGYIENGDE 1181

Query: 330  REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
              AL+++  M+ S ++PDE+T  +++ A + L ALE G+ +   + K     D FVG +L
Sbjct: 1182 DHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSL 1241

Query: 390  IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
            +DMYCKCG V+ A RVFR+M  +    W AM++GLA +GH D++L++F  M    I PD+
Sbjct: 1242 VDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDK 1301

Query: 450  VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
            VT++GVLSAC+H+G+  E  +YF  M   +GI P   HY C+VD LGRAG + EA  VI 
Sbjct: 1302 VTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIA 1361

Query: 510  NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
            +MP K ++ ++ ALLGACR   DAE A+  A ++L LDP + + YVLL NIYAA  +WD+
Sbjct: 1362 SMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDD 1421

Query: 570  FRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG- 628
              + R M+  + +KK PG S I++   VH FV  D+SHPQ   IY K++++   ++  G 
Sbjct: 1422 VTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGS 1481

Query: 629  YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
            Y+PD     LDV EE+KERA+Y HSEKLA+AFGLIS+ P  TIR++KNLR+C DCH   K
Sbjct: 1482 YVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIK 1541

Query: 689  LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             +S +  RE+++RD  RFHHF++G+CSC DYW
Sbjct: 1542 CISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 143/628 (22%), Positives = 259/628 (41%), Gaps = 81/628 (12%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            K+ H++ +  G L +  + N L+T   S+ G +  A +VF K     +  WN+++  Y++
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMY-SKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 93   I--DSHKN--------GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
                S++N        G+L       + +         LL GF     V+  + +H + +
Sbjct: 690  FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGF-----VQVSETVHGYAV 744

Query: 143  KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
            K GF+  +FV  AL++ YC  G V  AR +FD   + D V WN M   Y      DE  +
Sbjct: 745  KIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALR 804

Query: 203  LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-----KIVP-----NLI 252
             F    R G  P    +  V+       + DV     R+ ++      K+ P     N+ 
Sbjct: 805  FFSAFHRSGFFPDFSNLHCVIGGV----NSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIF 860

Query: 253  LENALTDMYAACGEMGFALEIFGNIKNK----DVISWTAIVTGYINRGQVDMARQY---- 304
              N     +   G++  A++ F  +       D ++   I++  +    +D+  Q     
Sbjct: 861  AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920

Query: 305  -------------------------------FDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                                           F   PE D + W  MI  Y + N   EA+
Sbjct: 921  IKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 334  TLFREMQTSNIRPDEFTIVSILTACANLGALE---LGEWVKTYIDKNKVKNDIFVGNALI 390
              FR++    ++PD+FT+ S+L AC+     E   LG  V  Y  K  + ND FV  ALI
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALI 1040

Query: 391  DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            D+Y K G +++A+ +       D  +W A++ G   +    K+L+ FS M    I  DE+
Sbjct: 1041 DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEI 1100

Query: 451  TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
            T    + A      + +G++  A   I+ G   +      ++D+  + G +  ALE+   
Sbjct: 1101 TLATAIKASGCLINLKQGKQIQA-YAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGE 1159

Query: 511  MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD---PDNEAVYVLLCNIYAACNRW 567
            +  +P+ + W  ++     + D + A ++   ++ +    PD E  +  L    +     
Sbjct: 1160 IS-RPDEVAWTTMISGYIENGDEDHA-LSVYHLMRVSGVQPD-EYTFATLIKASSCLTAL 1216

Query: 568  DNFRELRQMI--LDRGIKKTPGCSMIEM 593
            +  +++   +  LD  +    G S+++M
Sbjct: 1217 EQGKQIHANVVKLDYSLDHFVGTSLVDM 1244



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 180/430 (41%), Gaps = 60/430 (13%)

Query: 131  VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
            ++ GK  H  ++  G     ++ N LI+ Y  CG +  AR +FD S   D+VTWN++ + 
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 191  YKRVKQFD-----ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
            Y +          E  +LFG +   G   T +T+  +L  C     + V +  H Y  + 
Sbjct: 687  YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 246  KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
                +L +  AL ++Y   G +G A  +F  +  +D + W  ++  Y+     D A ++F
Sbjct: 747  GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 306  DQ------MPE--------------------------RDYVL-------------WTAMI 320
                     P+                          + Y +             W   +
Sbjct: 807  SAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKL 866

Query: 321  DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
              +L   +   A+  F+ +  S I  D  T+V IL+A      L+LGE +   + K+   
Sbjct: 867  TEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA 926

Query: 381  NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
              + V N+L++MY K G V  A++ F      D  +W  MI   A N    +++  F  +
Sbjct: 927  PVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDL 986

Query: 441  LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH------GIEPNEAHYGCMVDL 494
            LR  + PD+ T   VL AC+ TG  DEG EYF   +  H      GI  +      ++DL
Sbjct: 987  LRDGLKPDQFTLASVLRACS-TG--DEG-EYFTLGSQVHVYAIKCGIINDSFVSTALIDL 1042

Query: 495  LGRAGHLNEA 504
              + G ++EA
Sbjct: 1043 YSKGGKMDEA 1052



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 136/286 (47%), Gaps = 9/286 (3%)

Query: 28   SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
            ++ Q KQI +  IKLG   +  V + ++     + GDM  A ++F +I RP    W TMI
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYI-KCGDMPNALELFGEISRPDEVAWTTMI 1172

Query: 88   KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
             GY       + + +Y  M  S V+PD YTF  L+K  +   A+E GK++H +V+K  + 
Sbjct: 1173 SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232

Query: 148  SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
               FV  +L+  YC CG V  A  +F       VV WNAM  G  +    DE   LF  M
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 208  ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY----VKECKIVPNLILENALTDMYAA 263
            +  G+ P  VT + VLSAC+      +   A++Y     K   I P +   + L D    
Sbjct: 1293 QSNGIQPDKVTFIGVLSACSH---SGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGR 1349

Query: 264  CGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDMARQYFDQM 308
             G +  A  +  ++  K   S + A++     +G  + A++  D++
Sbjct: 1350 AGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKL 1395



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 26/220 (11%)

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           + DL +GKRAH  +     +P+  L N L  MY+ CG +  A ++F    ++D+++W +I
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           +  Y          Q+ D   E        +++G+           L RE   S  R   
Sbjct: 684 LAAYA---------QFADSSYEN-------VLEGF-------RLFGLLREFGFSITR--- 717

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T+  +L  C   G +++ E V  Y  K   + D+FV  AL+++YCK G V +A+ +F +
Sbjct: 718 LTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDK 777

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           M  +D   W  M+     N   D++L  FS   R+   PD
Sbjct: 778 MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 19   LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            LI       ++ Q KQIH+  +KL    +  V   LV   C + G ++ A +VFRK+   
Sbjct: 1206 LIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYC-KCGSVQDAYRVFRKMDVR 1264

Query: 79   SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
             V  WN M+ G ++       + ++  M  + ++PD  TF
Sbjct: 1265 KVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTF 1304



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 11/170 (6%)

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           L+LG+     I  +    D ++ N LI MY KCG +  A++VF +   +D  TW +++  
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 424 LAINGHGDKSLD-------MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
            A     D S +       +F  +         +T   +L  C  +G V +  E      
Sbjct: 687 YA--QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV-QVSETVHGYA 743

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           ++ G E +    G +V++  + G + +A  +   MP + ++++W  +L A
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVMLKA 792


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/706 (36%), Positives = 404/706 (57%), Gaps = 10/706 (1%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR-KIPRPSVC 81
           + +  +  QL ++HS  I LGL  +     KL+      + D   +  VFR   P  +V 
Sbjct: 23  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFR-DPTSSFSVFRLASPSNNVY 81

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           LWN++I+  +        + +Y +  +  ++PD YTFP ++      +  E  K +H  V
Sbjct: 82  LWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRV 141

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE-- 199
           L  GF S +++ NALI  YC   ++D AR +F+     DVV+WN++ SGY     ++E  
Sbjct: 142 LDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEAL 201

Query: 200 -----TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
                + KLF EM  +   P  +TI  +L AC  L DL+ GK  H Y+       +    
Sbjct: 202 EIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS 260

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N L +MYA CG +  + E+F  +K KD +SW +++  YI  G++  + + F+ M  RD +
Sbjct: 261 NILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDII 320

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W  +I   +        L +   M+T  + PD  T++SIL  C+ L A   G+ +   I
Sbjct: 321 TWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI 380

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K  +++D+ VGN LI+MY KCG +  + +VF+ M  KD  TWTA+I    + G G K++
Sbjct: 381 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAV 440

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
             F +M  A I+PD V +V ++ AC+H+G+V+EG  YF  M   + IEP   HY C+VDL
Sbjct: 441 RAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDL 500

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           L R+  L++A + I +MP+KP+S +WGALL ACR+  D E+AE  +++I+EL+PD+   Y
Sbjct: 501 LSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYY 560

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VL+ NIYAA  +WD  R +R+ I  RG+KK PGCS +E+   V+ F  G K   Q +E+ 
Sbjct: 561 VLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVN 620

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L  +   +   GY+ ++  V  D+ E++K   +  HSE+LA+AFGL+++ PG  ++++
Sbjct: 621 KLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVM 680

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+C DCH + K +S +  RE++VRD  RFH FK G+CSC DYW
Sbjct: 681 KNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/471 (48%), Positives = 327/471 (69%)

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ L N +   Y +  E+  A ++F  +  +D++SW  ++ GY  RG+V +AR+ FD   
Sbjct: 22  DVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTE 81

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           +RD   W++MI  Y +  R +EAL L+REM  ++I PD  T+VS+++AC++LGAL +G  
Sbjct: 82  DRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAE 141

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           V  +++ N+++ D+ +G ALIDMY KCGD+E AQRVF  M  KD  TW++MI+GLA +G 
Sbjct: 142 VHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGL 201

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
           G +SL +FS+M+   + P+ VT+VGVL ACTH G+V EG++YF  M   HGIEP   HYG
Sbjct: 202 GHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG 261

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           CMVDLLGR+GH+ EA ++I++M  +P++I+W ALLGACR+H++ E+AE A  ++  LDP 
Sbjct: 262 CMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPL 321

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
            +  YVLL NIYA  N W+   E+R+ I    I++ PG S IE +  +HEFV+GD+ HP+
Sbjct: 322 GDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPR 381

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
           +KEIY  L+EM   LK  GY P    V  D+ E+ KER++ +HSEKLA+AF L+++    
Sbjct: 382 SKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARS 441

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           TIRI KNLR C DCH   KL+S+VYDR++IVRD+ RFHHF  G CSCKDYW
Sbjct: 442 TIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 140/270 (51%), Gaps = 33/270 (12%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N +I  Y + GEV +AR IFD +   D  +W++M S Y + ++  E  +L+ EM    ++
Sbjct: 58  NTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASII 117

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  +T+V V+SAC+ L  L VG   HR+V+  +I  +L L  AL DMYA CG++  A  +
Sbjct: 118 PDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRV 177

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  KDV +W++++ G  N G                         G+       E+L
Sbjct: 178 FDRMPEKDVQTWSSMIIGLANHGL------------------------GH-------ESL 206

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDM 392
           +LF +M +  ++P+  T V +L AC ++G +  G ++ ++  + + ++  +     ++D+
Sbjct: 207 SLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDL 266

Query: 393 YCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
             + G VE+A+++ R M    D   W A++
Sbjct: 267 LGRSGHVEEARQLIRSMTFEPDTIIWRALL 296



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 131/292 (44%), Gaps = 11/292 (3%)

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
           +G++  A ++F          W++MI  Y++    K  + ++ +M  + + PD  T   +
Sbjct: 67  RGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSV 126

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           +   +   A+  G E+H  V     +  + +  ALI  Y  CG+++ A+ +FD   + DV
Sbjct: 127 VSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDV 186

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
            TW++M  G        E+  LF +M  +G+ P  VT V VL AC  +  +  GK+  R 
Sbjct: 187 QTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRS 246

Query: 242 VKECK-IVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVD 299
           + E   I P +     + D+    G +  A ++  ++    D I W A++        V+
Sbjct: 247 MNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVE 306

Query: 300 MARQ------YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           +A +        D + +  YVL + +   Y + N +     + + ++  NI+
Sbjct: 307 IAEEAMAKLRVLDPLGDGHYVLLSNI---YAQANSWEGVAEMRKTIRRDNIQ 355


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/700 (37%), Positives = 392/700 (56%), Gaps = 33/700 (4%)

Query: 22  PIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVC 81
              +  S++  +Q+H   +K G     +V N LV F       +  A KVF ++    V 
Sbjct: 204 SFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNH-RVDSARKVFDEMTERDVI 262

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
            WN++I GY      + G+ +++ ML S +  D  T   +  G      +  G+ +HC  
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFG 322

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           +K  F       N L+  Y  CG++D A+ +F       VV++ +M +GY R     E  
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAV 382

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
           KLF EME +G+ P   T+  VL+ CA+ + LD GKR H ++KE  +  ++ + NAL DMY
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMY 442

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           A CG M                                 A   F +M  +D + W  +I 
Sbjct: 443 AKCGSM-------------------------------REAELVFSEMRVKDIISWNTVIG 471

Query: 322 GYLRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
           GY +     EAL+LF  +       PDE T+  +L ACA+L A + G  +  YI +N   
Sbjct: 472 GYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
           +D  V N+L+DMY KCG +  A+ +F ++  KD  +WT MI G  ++G G +++ +F+QM
Sbjct: 532 SDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQM 591

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
            +A I PDE+++V +L AC+H+G+VDEG  +F  M  +  IEP   HY C+VD+L R G+
Sbjct: 592 RQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGN 651

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L++A   I+NMP+ P++ +WGALL  CR+H D ++AE  A+++ EL+P+N   YVL+ NI
Sbjct: 652 LSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANI 711

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YA   +W+  + LR+ I  RG++K PGCS IE+ G V+ FVAGD S+P+T++I   L  +
Sbjct: 712 YAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGV 771

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
            + +   GY P      +D  E +KE A+  HSEKLAMA G+ISSG G  IR+ KNLR+C
Sbjct: 772 RARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVC 831

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            DCH MAK +S +  RE+++RD  RFH FK G CSC+ +W
Sbjct: 832 GDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 170/443 (38%), Gaps = 88/443 (19%)

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T+  VL  CA  K L  GK    +++    V +  L + L  MY  CG++  A  +F  +
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV 155

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQM----------------------------- 308
           K +  + W  ++      G    +   F +M                             
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGE 215

Query: 309 -----------PERDYVLWTAMIDGYLRVNRFREALTLFREMQT---------------- 341
                       ER+ V   +++  YL+ +R   A  +F EM                  
Sbjct: 216 QLHGYILKSGFGERNSV-GNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSN 274

Query: 342 ---------------SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
                          S I  D  TIVS+   CA+   + LG  V  +  K     +    
Sbjct: 275 GLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFC 334

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           N L+DMY KCGD++ A+ VFREM  +   ++T+MI G A  G   +++ +F +M    I 
Sbjct: 335 NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY-----GCMVDLLGRAGHL 501
           PD  T   VL+ C    ++DEG+       +   I+ N+  +       ++D+  + G +
Sbjct: 395 PDVYTVTAVLNCCARNRLLDEGKR------VHEWIKENDMGFDIFVSNALMDMYAKCGSM 448

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL---ELDPDNEAVYVLLC 558
            EA  V   M +K + I W  ++G    +  A  A      +L      PD   V  +L 
Sbjct: 449 REAELVFSEMRVK-DIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVL- 506

Query: 559 NIYAACNRWDNFRELRQMILDRG 581
              A+ + +D  RE+   I+  G
Sbjct: 507 PACASLSAFDKGREIHGYIMRNG 529



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 98/211 (46%), Gaps = 6/211 (2%)

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRP----DEFTIVSILTACANLGALELGEWVKTY 373
           ++ D   ++ RF E+  L   ++  ++      D  T+ S+L  CA+  +L+ G+ V  +
Sbjct: 60  SVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNF 119

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           I  N    D  +G+ L  MY  CGD+++A RVF ++  +    W  ++  LA +G    S
Sbjct: 120 IRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGS 179

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           + +F +M+ + +  D  T+  V  + +    V+ G E      ++ G     +    +V 
Sbjct: 180 IGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGG-EQLHGYILKSGFGERNSVGNSLVA 238

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
              +   ++ A +V   M  + + I W +++
Sbjct: 239 FYLKNHRVDSARKVFDEMTER-DVISWNSII 268


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/547 (43%), Positives = 354/547 (64%), Gaps = 9/547 (1%)

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS-----VTIVLVLSACAKLKDLDV 234
           ++  +NA+   + +   +  T   F     + VLP +      T   VL ACA L  +  
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNN---QLVLPNAPNPDEYTFTSVLKACAGLAQVLE 145

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G++ H +V +     NL + N+L D+Y   G    A ++F  +  +DV+SW  +++GY  
Sbjct: 146 GQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCF 205

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVS 353
            G VD AR  FD M E++ V W+ MI GY R  ++ +A+ LFR+MQ    + P++ T+VS
Sbjct: 206 SGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVS 265

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L+ACA+LGAL+LG+W+  +I +NK++  +F+GNAL DMY KCG V +A+ VF EM  +D
Sbjct: 266 VLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERD 325

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +W+ +I+GLA+ G+ +++ + F++M+   + P++++++G+L+ACTH G+VD+G EYF 
Sbjct: 326 VISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFD 385

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
            M   +GI P   HYGC+VDLL RAG L++A  +I +MPM+PN IVWGALLG CR+++DA
Sbjct: 386 MMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDA 445

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           E  E    +ILELD ++    V L N+YA+  R D+    R  + D    KTPGCS IE+
Sbjct: 446 ERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEI 505

Query: 594 NGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHS 653
           N  V+EF  GD SHPQ+  IY  + E+   +K  GY P    V  ++ EE+KE A+  HS
Sbjct: 506 NNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHS 565

Query: 654 EKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
           EKLA+AFGLI++  G TIRIVKNLR+C DCH   K++S + +RE++VRD++RFHHFK G 
Sbjct: 566 EKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGK 625

Query: 714 CSCKDYW 720
           CSC DYW
Sbjct: 626 CSCNDYW 632



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 204/437 (46%), Gaps = 69/437 (15%)

Query: 28  SMHQLKQIHSQTIKLGLLT-NPTVQNKLVTFCCSEKGDMKYACKVFRK-IPRPSVCLWNT 85
           SM QL +I +Q I   + + +P +         S  G+++++  +F   +  P++  +N 
Sbjct: 36  SMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNA 95

Query: 86  MIKGYSRIDSHKNGVLIYLD--MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           ++K +S+ ++    +  + +  +L +   PD YTF  +LK       V  G+++HC V K
Sbjct: 96  LLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTK 155

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA----------------- 186
           +G +S++FV+N+L+  Y   G   +A+ +FD     DVV+WN                  
Sbjct: 156 YGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMV 215

Query: 187 --------------MFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKD 231
                         M SGY R +++ +  +LF +M+ +G L P  VT+V VLSACA L  
Sbjct: 216 FDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGA 275

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           LD+GK  HR+++  KI   L L NAL DMYA CG +  A  +F  +  +DVISW+ I+ G
Sbjct: 276 LDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMG 335

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
               G  +                               EA   F EM    + P++ + 
Sbjct: 336 LAMYGYAN-------------------------------EAFNFFAEMIEDGLEPNDISF 364

Query: 352 VSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM- 409
           + +LTAC + G ++ G E+         +   I     ++D+  + G +++A+ +   M 
Sbjct: 365 MGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMP 424

Query: 410 LRKDKFTWTAMIVGLAI 426
           ++ +   W A++ G  I
Sbjct: 425 MQPNVIVWGALLGGCRI 441


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 218/471 (46%), Positives = 330/471 (70%)

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ L N +   Y   GE+  A  +F  ++ +D++SW  ++ GY   G+VD+AR+ F+ M 
Sbjct: 105 DVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMD 164

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           +RD   W++M+  Y +  R ++AL L+REM+ + + PD  T+VS+L+AC+++GAL +G  
Sbjct: 165 DRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAE 224

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           V  +++ N V+ D+ +G ALIDMY KCGD+E + RVF  M  KD  TW++MI+GLA +G 
Sbjct: 225 VHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGF 284

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
           G  +L +FS+ML   + P+EVT++GVL +CTH G+V +G++YF+ M++ HG+ P   HYG
Sbjct: 285 GHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYG 344

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           CMVDLLGR+GH+ EA ++I++MP +P++++W ALLGACR++++ E+AE A  ++  LDP 
Sbjct: 345 CMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPH 404

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
            +  YVLL NIYA  N W+   E+R+ +    I++ PG S IE    +HEF++GD+SHP+
Sbjct: 405 ADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPR 464

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
           +KEIY  L EM   L+  GY P    V  D+ E+ KERA+ +HSEKLA+AFGL+++  G 
Sbjct: 465 SKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGS 524

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           T+RI KNLR C DCH   KL++++Y+R++I+RD+ RFHHF  G CSCKDYW
Sbjct: 525 TLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 149/338 (44%), Gaps = 75/338 (22%)

Query: 125 FTRDIAVE-FGKELHCHVLKFGFDSS----VFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           F R   VE + K     + +  FD +    VF+ N +++ Y   GEV  AR +FD   + 
Sbjct: 76  FVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRER 135

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFG-------------------------------EME 208
           D+V+WN M  GY    + D  R++F                                EM 
Sbjct: 136 DMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMR 195

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
              V P   T+V VLSAC+ +  L VG   H++V+   +  ++ L  AL DMYA CG++ 
Sbjct: 196 AACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIE 255

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            ++ +F ++  KDV++W++++ G  N G        F                       
Sbjct: 256 NSVRVFHSMPVKDVLTWSSMIIGLANHG--------FGH--------------------- 286

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG-- 386
             +AL+LF  M +  ++P+E T + +L +C +LG +  G   K Y     V + +     
Sbjct: 287 --DALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDG---KKYFSSMSVVHGVTPKVQ 341

Query: 387 --NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
               ++D+  + G +E+A+++ R+M    D   W A++
Sbjct: 342 HYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALL 379



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 17/294 (5%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G++  A +VF  +       W++M+  Y++    K+ + ++ +M  + V PD  T   +L
Sbjct: 151 GEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVL 210

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
              +   A+  G E+H  V   G +  V +  ALI  Y  CG+++ +  +F      DV+
Sbjct: 211 SACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVL 270

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           TW++M  G        +   LF  M  +G+ P  VT + VL +C  L  +  GK   +Y 
Sbjct: 271 TWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGK---KYF 327

Query: 243 KECKIV----PNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQ 297
               +V    P +     + D+    G +  A ++  ++    D + W A++        
Sbjct: 328 SSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKN 387

Query: 298 VDMARQYFDQM----PERD--YVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           V++A +   ++    P  D  YVL + +   Y + N +     + R ++   I+
Sbjct: 388 VEVAEEAMAKLRVLDPHADGHYVLLSNI---YAQANSWEGVAEMRRTLRRERIQ 438


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/711 (36%), Positives = 404/711 (56%), Gaps = 35/711 (4%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P   T    L+  +E  E  + L   H+   KLG  +N  V   L+    +  G +  A 
Sbjct: 41  PFVFTTILKLLVSVECAELAYSL---HACIYKLGHESNAFVGTALID-AYAVCGSVNSAR 96

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           + F  I    +  W  M+  Y+  D  ++ + ++ +M      P+++TF  +LK      
Sbjct: 97  QAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLE 156

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A   GK +H  VLK  ++  ++V   L+  Y   G+ +    +F+   K DV+ W+ M S
Sbjct: 157 AFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMIS 216

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
            Y +  Q  E  +LFG+M R  VLP   T   VL +CA +++L +GK+ H +V +  +  
Sbjct: 217 RYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDG 276

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           N+ + NAL D+YA CG +                               D + + F ++P
Sbjct: 277 NVFVSNALMDVYAKCGRL-------------------------------DNSMKLFMELP 305

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
            R+ V W  MI GY++     +AL+L++ M    ++  E T  S+L ACA+L A+ELG  
Sbjct: 306 NRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ 365

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           + +   K     D+ VGNALIDMY KCG ++ A+ VF  +  +D+ +W AMI G +++G 
Sbjct: 366 IHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGL 425

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
             ++L  F  M     +P+++T+V +LSAC++ G++D G+ YF  M   +GIEP   HY 
Sbjct: 426 VGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYT 485

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           CMV LLGR+GHL++A+++I+ +P++PN  VW ALLGAC +H D ++  M+A+QIL++DP 
Sbjct: 486 CMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQ 545

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           +EA +VLL NIYA   RW++   +R+ + ++G+KK PG S IE  G+VH F  GD SHP 
Sbjct: 546 DEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPD 605

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
            K I   L+ +    +  GY+PD++ V  DV +++K+R ++ HSE+LA+AFGLI +    
Sbjct: 606 MKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRG 665

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            IRI+KNLR+C DCH   KL+S +  R++I+RD  RFHHF+ G CSC DYW
Sbjct: 666 HIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 170/371 (45%), Gaps = 43/371 (11%)

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-----VLPTSVTIVLVLSACAKLKDLDV 234
           + V++  +  GY +  Q DE   LF  + R+G      + T++  +LV   CA+L     
Sbjct: 5   NTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAEL----- 59

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
               H  + +     N  +  AL D YA CG +  A + F  I  KD++SWT +V  Y  
Sbjct: 60  AYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACY-- 117

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
                          E D               RF+++L LF EM+     P+ FT   +
Sbjct: 118 --------------AEND---------------RFQDSLQLFAEMRMVGFNPNHFTFAGV 148

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           L AC  L A  +G+ V   + K   + D++VG  L+D+Y K GD     RVF EM + D 
Sbjct: 149 LKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDV 208

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
             W+ MI   A +    +++++F QM RA ++P++ T+  VL +C     +  G++    
Sbjct: 209 IPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCH 268

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           + ++ G++ N      ++D+  + G L+ ++++   +P + N + W  ++       D +
Sbjct: 269 V-LKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNR-NEVTWNTMIVGYVQSGDGD 326

Query: 535 MAEMAAKQILE 545
            A    K +LE
Sbjct: 327 KALSLYKNMLE 337



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 131/314 (41%), Gaps = 48/314 (15%)

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           MP+R+ V +  +I GY++  +  E + LF  +       + F   +IL    ++   EL 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
             +   I K   +++ FVG ALID Y  CG V  A++ F  +  KD  +WT M+   A N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN--- 484
                SL +F++M      P+  T+ GVL AC        G E F+     HG       
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACI-------GLEAFSVGKSVHGCVLKTCY 173

Query: 485 --EAHYGC-MVDLLGRAGHLNEALEVIKNMP----------------------------- 512
             + + G  ++DL  + G  N+ L V + MP                             
Sbjct: 174 EMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQ 233

Query: 513 -----MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD-NEAVYVLLCNIYAACNR 566
                + PN   + ++L +C    + ++ +     +L++  D N  V   L ++YA C R
Sbjct: 234 MRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGR 293

Query: 567 WDNFRELRQMILDR 580
            DN  +L   + +R
Sbjct: 294 LDNSMKLFMELPNR 307


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/701 (38%), Positives = 407/701 (58%), Gaps = 46/701 (6%)

Query: 22  PIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGD---MKYACKVFRKIP 76
           P  T  ++ Q  ++H+     G L +P   + L+     C    D   ++YA  +F ++P
Sbjct: 5   PWPTPRTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRMP 64

Query: 77  RPSVCLWNTMIKGYSRIDSHKNG----VLIYLDMLKSDVRPDNYTFPFLLK--GFTRDIA 130
             S  L++T ++   R  +         +++  M ++ VRPD +TF FL K    +R  A
Sbjct: 65  -ASTFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRA 123

Query: 131 VEFGKELHCHVLKFGFDSSV-FVQNALISTYCLCGEVDMARGIFD-VSYKD--------- 179
           +     LH   L+    S+  FV N+LI  Y   G     R  FD +  KD         
Sbjct: 124 L-LCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVIS 182

Query: 180 ---------------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
                                DV++W ++ + Y R  +  E    F  M  +G+ P  VT
Sbjct: 183 GLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVT 242

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI- 277
           ++ VLSAC++LKDL++G   H  VKE  +  +  L  AL DMYA CG+ G A E+F  + 
Sbjct: 243 VIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVG 302

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
           + +   SW AI+ GY   G VD+AR  FDQM  RD + + +MI GY+   + REAL LF 
Sbjct: 303 RGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFM 362

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
            M+  ++R D FT+VS+L+ACA+LGAL  G  +   I+   V+ DI++G AL+DMY KCG
Sbjct: 363 NMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCG 422

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            V +A  VF+ M ++D   WTAMI GLA NG G   L+ F QM      P+ V+Y+ VL+
Sbjct: 423 RVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLT 482

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           AC+H+ +++EGR YF +M I + I P   HYGCM+DLLGR+G L+EA++++K MPM+PNS
Sbjct: 483 ACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNS 542

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
           ++W ++L ACRVH+  ++A+ AA+ +L+++PD +AVYV L NI     +W++  ++R ++
Sbjct: 543 VIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLM 602

Query: 578 LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF 637
            +R +KKT G S + + G VH+FV  DKSHP+  EI   L+E++  LK  GY P  S+V 
Sbjct: 603 EERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSAGYSPITSQVT 662

Query: 638 LDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
           +DV EE+KE+ +  HSEKLA+AFGL+S  P + + I+KNLR
Sbjct: 663 VDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNLPVHIIKNLR 703



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/587 (24%), Positives = 279/587 (47%), Gaps = 41/587 (6%)

Query: 15   QETP-LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
            +ETP   S I    S ++  Q+H + + LGL  NP V + LV      +     +  +FR
Sbjct: 794  RETPHTFSTILGVCSTYEALQLHGRVLALGLCCNPFVGSALVNHYMHVESP-HASLSLFR 852

Query: 74   KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG-FTRDIAVE 132
            ++P  +  + N +++G   +   +  +  +LDM +  +  +  ++ + +KG +     +E
Sbjct: 853  ELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLE 912

Query: 133  FGKELHCHVLKFGF-DSSVFVQNALISTYCLCGE-VDMARGIFDVSYKDDVVTWNAMFSG 190
             G++LH  VLK G+  S++F+ N+L+  Y   G+ VD  + + D+   +DV++WN++ S 
Sbjct: 913  QGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDI-LSEDVISWNSILSM 971

Query: 191  YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI-VP 249
            Y       E      +M   G +P+  + V +L+   K  D  +G + H  V +      
Sbjct: 972  YADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCS 1031

Query: 250  NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
            ++ ++  L DMY  C     +L I                               F+++P
Sbjct: 1032 SVHVQTTLIDMYGKCCCFDHSLAI-------------------------------FNEIP 1060

Query: 310  ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-- 367
                    ++I   LR N F  AL +   M    + PD+ T  + + A +   +  L   
Sbjct: 1061 SIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSC 1120

Query: 368  EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
            + + + + K   + D+ V ++LI  Y   G +  +  +F  +L  +   +TA+I   A  
Sbjct: 1121 QMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARY 1180

Query: 428  GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
            G G +++++F QM+ + + PD VT++  ++ C   GM +EGR     M     ++P+E H
Sbjct: 1181 GDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERH 1240

Query: 488  YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
            + CMV+LL R G + EA+E+++  P++  +  W +LL +C+ H +  + + AA  ++++ 
Sbjct: 1241 FACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVG 1300

Query: 548  PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
              + A  + + N +      +    +++M   + +KK+ G S+IE++
Sbjct: 1301 RKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKKS-GHSLIEVS 1346


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/616 (39%), Positives = 373/616 (60%), Gaps = 3/616 (0%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYA 68
           P+ +    P +  +E+C +M QLKQI ++    G++T+    ++++ FC  +  GD+ YA
Sbjct: 151 PTNVIITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYA 210

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
             +F ++ +P+  +WNTMI+GY            ++ M +  V  D+ +F F LK   + 
Sbjct: 211 HTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQF 270

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
             V  G+ ++C V K GFD  + V+N LI  Y   G +  AR +FD S   DVVTW  M 
Sbjct: 271 ETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMI 330

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
            GY      +E  ++F  M    V P  VT++ V+SAC+ + +L++GKR H  V+E  + 
Sbjct: 331 DGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMR 390

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            +L L NAL DMY  C  +  A E+F  +  KDV SWT++V GY   G ++ AR++FDQ 
Sbjct: 391 CSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQT 450

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
           P ++ V W+AMI GY + N+ +E+L LF EM    + P E T+VS+L+AC  L  L LG+
Sbjct: 451 PRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGD 510

Query: 369 WVKTYIDKNKV-KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           W+  Y    K+    + + NA++DMY KCG ++ A  VF  M  ++  +W  MI G A N
Sbjct: 511 WIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAAN 570

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G   +++++F QM      P+ +T+V +L+AC+H G++ EGREYF +M  ++GI+P   H
Sbjct: 571 GRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGH 630

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y CMVDLLGR G L EA ++I NMPM+P    WGALL ACR+H + E+A ++A  +L LD
Sbjct: 631 YACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLD 690

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P++  +YVLL N  A   +W + R +R ++ D+G+KK PG S+IE++G   EF+  D+SH
Sbjct: 691 PEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESH 750

Query: 608 PQTKEIY-LKLDEMTS 622
           PQ++EIY L+ D ++S
Sbjct: 751 PQSEEIYKLECDNLSS 766


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/704 (36%), Positives = 401/704 (56%), Gaps = 35/704 (4%)

Query: 16  ETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           E  L + ++ C +   LKQ   IHS  IK G   N  +   LV    S+ G    A  VF
Sbjct: 314 EFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMY-SKCGLAIDAIGVF 372

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           + I +P + +W+ +I    +    +  + ++  M   D  P+ YT   LL   T    ++
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           +G+ +H  V K+GF++ V V NAL++ Y   G V     +++     D+++WNA  SG  
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLH 492

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
               +D    +F  M  +G +P   T + +L +C+ L D+  G++ H ++ + ++  N  
Sbjct: 493 DCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +  AL DMYA C  +          ++ DV                      F+++  RD
Sbjct: 553 VCTALIDMYAKCMYL----------EDADVA---------------------FNRLSVRD 581

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
              WT +I  Y + N+  +AL  FR+MQ   ++P+EFT+   L+ C++L +LE G+ + +
Sbjct: 582 LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHS 641

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            + K+   +D+FVG+AL+DMY KCG +E+A+ +F  ++R+D   W  +I G A NG G+K
Sbjct: 642 MVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNK 701

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L  F  ML   I PD VT+ G+LSAC+H G+V+EG+E+F  M    GI P   H  CMV
Sbjct: 702 ALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMV 761

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           D+LGR G  +E  + I+ M +  N+++W  +LGA ++H +  + E AA ++ EL P+ E+
Sbjct: 762 DILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEES 821

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            Y+LL NI+A   RWD+ + +R ++  +G+KK PGCS +E NG VH FV+ D SHPQ +E
Sbjct: 822 SYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQE 881

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I+LKLDE+  +L  + Y+P    V  +VGE +K+  +  HSE+LA+ F LIS+     IR
Sbjct: 882 IHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIR 941

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           I KNLR+C DCH + K +S + ++E++VRD  RFHHFK+G+CSC
Sbjct: 942 IFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 155/612 (25%), Positives = 263/612 (42%), Gaps = 84/612 (13%)

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           YA  V  K+P   V  W  +I+G        + + ++ +M    + P+ +T    LK  +
Sbjct: 165 YARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACS 224

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
             +A++ GK++H    K G    +FV +AL+  Y  CGE+++A  +F    + + VTWN 
Sbjct: 225 LCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNV 284

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + +GY +        KLF  M    V     T+  VL  CA  K+L  G+  H  + +C 
Sbjct: 285 LLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG 344

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF- 305
              N  +   L DMY+ CG    A+ +F  IK  D++ W+A++T    +GQ + + + F 
Sbjct: 345 YEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFH 404

Query: 306 -----DQMP---------------------------------ERDYVLWTAMIDGYLRVN 327
                D +P                                 E D  +  A++  Y++  
Sbjct: 405 LMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNG 464

Query: 328 RFREALTLFREMQTSNI-----------------RP--------------DEFTIVSILT 356
              +   L+  M   ++                 RP              + +T +SIL 
Sbjct: 465 CVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           +C+ L  +  G  V  +I KN++ ++ FV  ALIDMY KC  +E A   F  +  +D FT
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFT 584

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           WT +I   A    G+K+L+ F QM +  + P+E T  G LS C+    + EG +    M 
Sbjct: 585 WTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASL-EGGQQLHSMV 643

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
            + G   +      +VD+  + G + EA E +    ++ ++I W  ++     +     A
Sbjct: 644 FKSGHVSDMFVGSALVDMYAKCGCMEEA-EALFEALIRRDTIAWNTIICGYAQNGQGNKA 702

Query: 537 EMAAKQILE--LDPDNEAVYVLLCNIYAACNRWDNFRELRQ----MILDRGIKKT-PGCS 589
             A + +L+  + PD     V    I +AC+      E ++    M  D GI  T   C+
Sbjct: 703 LTAFRMMLDEGISPDG----VTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCA 758

Query: 590 -MIEMNGVVHEF 600
            M+++ G V +F
Sbjct: 759 CMVDILGRVGKF 770



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 205/454 (45%), Gaps = 71/454 (15%)

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
           DS ++V  +L++ Y  C     AR +       DVV+W A+  G       +++  LF E
Sbjct: 146 DSHLWV--SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQE 203

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M+ +G++P   T+   L AC+    LD+GK+ H    +  ++ +L + +AL D+YA CGE
Sbjct: 204 MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGE 263

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
                                          +++A + F  MPE++ V W  +++GY + 
Sbjct: 264 -------------------------------IELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
                 L LF  M   +++ +EFT+ ++L  CAN   L+ G+ + + I K   + + F+G
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
             L+DMY KCG    A  VF+ + + D   W+A+I  L   G  ++S+ +F  M     +
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P++ T   +LSA T+TG +  G+   A    ++G E + A    +V +  + G +++  +
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHA-CVWKYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 507 VIKNM-----------------------PMK-----------PNSIVWGALLGACRVHRD 532
           + ++M                       P+            PN   + ++LG+C    D
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531

Query: 533 AEMAEMAAKQIL--ELDPDNEAVYVLLCNIYAAC 564
                     I+  +LD DN  V   L ++YA C
Sbjct: 532 VHYGRQVHAHIIKNQLD-DNNFVCTALIDMYAKC 564



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 142/264 (53%), Gaps = 10/264 (3%)

Query: 267 MGFALEIFGNIKNKDVIS-----WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           +G A  I G I  KDVI+     W ++V  Y        AR    +MP+RD V WTA+I 
Sbjct: 128 LGVAKAIHGLIV-KDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQ 186

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           G +      +++ LF+EMQ   I P+EFT+ + L AC+   AL+LG+ +     K  +  
Sbjct: 187 GLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLL 246

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
           D+FVG+AL+D+Y KCG++E A ++F  M  ++  TW  ++ G A  G     L +F  M+
Sbjct: 247 DLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMM 306

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MVDLLGRAGH 500
              +  +E T   VL  C ++  + +G +    + I+ G E NE   GC +VD+  + G 
Sbjct: 307 ELDVKCNEFTLTTVLKGCANSKNLKQG-QVIHSLIIKCGYEGNE-FIGCGLVDMYSKCGL 364

Query: 501 LNEALEVIKNMPMKPNSIVWGALL 524
             +A+ V K +  KP+ +VW AL+
Sbjct: 365 AIDAIGVFKTIK-KPDIVVWSALI 387



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 11/247 (4%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           S+L  CA+  +L + + +   I K+ +  D  +  +L+++Y KC     A+ V  +M  +
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDR 176

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D  +WTA+I GL   G  + S+ +F +M    I+P+E T    L AC+    +D G++  
Sbjct: 177 DVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMH 236

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
           A    + G+  +      +VDL  + G +  A ++   MP + N + W  LL       D
Sbjct: 237 AQ-AFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLLNGYAQRGD 294

Query: 533 AEMAEMAAKQILELDPD-NEAVYVLLCNIYAACNRWDNFRE---LRQMILDRGIKKTP-- 586
                     ++ELD   NE     L  +   C    N ++   +  +I+  G +     
Sbjct: 295 VTGVLKLFCSMMELDVKCNE---FTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFI 351

Query: 587 GCSMIEM 593
           GC +++M
Sbjct: 352 GCGLVDM 358


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/691 (37%), Positives = 396/691 (57%), Gaps = 36/691 (5%)

Query: 35  IHSQTIKLGLL-TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           I+   +K G L  +  V  +L+       GD+  A KVF K+P  ++  W  MI  ++++
Sbjct: 168 IYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQL 227

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
              ++ + ++LDM  S   PD +T+  +L   T    +  GK+LH  V++ G    V V 
Sbjct: 228 GCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVG 287

Query: 154 NALISTYCLC---GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD-ETRKLFGEMER 209
            +L+  Y  C   G VD +R +F+   + +V++W A+ + Y +  + D E  +LF +M  
Sbjct: 288 CSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS 347

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
             + P   +   VL AC  L D   G++ + Y  +  I     + N+L  MYA  G M  
Sbjct: 348 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRM-- 405

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
                                        + AR+ FD + E++ V + A++DGY +  + 
Sbjct: 406 -----------------------------EDARKAFDILFEKNLVSYNAIVDGYAKNLKS 436

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
            EA  LF E+  + I    FT  S+L+  A++GA+  GE +   + K   K++  + NAL
Sbjct: 437 EEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNAL 496

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           I MY +CG++E A +VF EM  ++  +WT+MI G A +G   ++L+MF +ML     P+E
Sbjct: 497 ISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE 556

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
           +TYV VLSAC+H GM+ EG+++F  M  +HGI P   HY CMVDLLGR+G L EA+E I 
Sbjct: 557 ITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN 616

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
           +MP+  +++VW  LLGACRVH + E+   AA+ ILE +PD+ A Y+LL N++A+  +W +
Sbjct: 617 SMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKD 676

Query: 570 FRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGY 629
             ++R+ + +R + K  GCS IE+   VH F  G+ SHPQ  +IY +LD++ S +K +GY
Sbjct: 677 VVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGY 736

Query: 630 MPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKL 689
           +PD   V  D+ EE KE+ ++QHSEK+A+AFGLIS+     IRI KNLR+C DCH   K 
Sbjct: 737 IPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKY 796

Query: 690 VSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +SM   RE++VRD  RFHH K+G CSC DYW
Sbjct: 797 ISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 142/565 (25%), Positives = 263/565 (46%), Gaps = 43/565 (7%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           + P  LT  + L+       +    K +H + ++ GL  +  V N L++   S+ GD + 
Sbjct: 39  NAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLY-SKCGDTET 97

Query: 68  ACKVFRKIP-RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           A  +F  +  +  +  W+ M+  ++        +  +LDML+    P+ Y F  +++  +
Sbjct: 98  ARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACS 157

Query: 127 RDIAVEFGKELHCHVLKFGF-DSSVFVQNALISTYCL-CGEVDMARGIFDVSYKDDVVTW 184
                  G+ ++  V+K G+ ++ V V   LI  +    G++  A  +FD   + ++VTW
Sbjct: 158 NANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTW 217

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
             M + + ++    +   LF +ME  G +P   T   VLSAC +L  L +GK+ H  V  
Sbjct: 218 TLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIR 277

Query: 245 CKIVPNLILENALTDMYAAC---GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
             +  ++ +  +L DMYA C   G +  + ++F  +   +V+SWTAI+T Y+  G+ D  
Sbjct: 278 LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECD-- 335

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                       +EA+ LF +M + +IRP+ F+  S+L AC NL
Sbjct: 336 ----------------------------KEAIELFCKMISGHIRPNHFSFSSVLKACGNL 367

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
                GE V +Y  K  + +   VGN+LI MY + G +E A++ F  +  K+  ++ A++
Sbjct: 368 SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIV 427

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G A N   +++  +F+++    I     T+  +LS     G + +G +    + ++ G 
Sbjct: 428 DGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-LKGGY 486

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAA 540
           + N+     ++ +  R G++  A +V   M  + N I W +++     H  A  A EM  
Sbjct: 487 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFH 545

Query: 541 KQILELDPDNEAVYVLLCNIYAACN 565
           K +      NE  YV    + +AC+
Sbjct: 546 KMLETGTKPNEITYVA---VLSACS 567



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 194/406 (47%), Gaps = 39/406 (9%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           M + +  PD  T+  LLK   R    + GK +H  +++ G +    V N LIS Y  CG+
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 94

Query: 166 VDMARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
            + AR IF+ +  K D+V+W+AM S +       +    F +M   G  P       V+ 
Sbjct: 95  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 154

Query: 225 ACAKLKDLDVGKRAHRY-VKECKIVPNLILENALTDMYA-ACGEMGFALEIFGNIKNKDV 282
           AC+      VG+  + + VK   +  ++ +   L DM+    G++G A ++F  +  +++
Sbjct: 155 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 214

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           ++WT ++T +   G                                 R+A+ LF +M+ S
Sbjct: 215 VTWTLMITRFAQLGCA-------------------------------RDAIDLFLDMELS 243

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC---GDV 399
              PD FT  S+L+AC  LG L LG+ + + + +  +  D+ VG +L+DMY KC   G V
Sbjct: 244 GYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV 303

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK-SLDMFSQMLRASIIPDEVTYVGVLSA 458
           + +++VF +M   +  +WTA+I     +G  DK ++++F +M+   I P+  ++  VL A
Sbjct: 304 DDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKA 363

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           C +      G + ++   ++ GI         ++ +  R+G + +A
Sbjct: 364 CGNLSDPYTGEQVYS-YAVKLGIASVNCVGNSLISMYARSGRMEDA 408



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 149/336 (44%), Gaps = 31/336 (9%)

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
           L V R   A +    M   N  PD  T   +L +C      +LG+ V   + ++ ++ D 
Sbjct: 20  LDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDS 79

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
            V N LI +Y KCGD E A+ +F  M  ++D  +W+AM+   A N    +++  F  ML 
Sbjct: 80  VVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 139

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MVDLLGR-AGH 500
               P+E  +  V+ AC++      G E      ++ G    +   GC ++D+  + +G 
Sbjct: 140 LGFYPNEYCFAAVIRACSNANYAWVG-EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGD 198

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE-AVYV---- 555
           L  A +V   MP + N + W  +     + R A++    A+  ++L  D E + YV    
Sbjct: 199 LGSAYKVFDKMPER-NLVTWTLM-----ITRFAQLG--CARDAIDLFLDMELSGYVPDRF 250

Query: 556 LLCNIYAACNRWDNF---RELRQMILDRGIK--KTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              ++ +AC         ++L   ++  G+      GCS+++M    +   A D S   +
Sbjct: 251 TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDM----YAKCAADGSVDDS 306

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKE 646
           ++++ ++ E       V     I   ++  GE DKE
Sbjct: 307 RKVFEQMPEHN-----VMSWTAIITAYVQSGECDKE 337


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/691 (37%), Positives = 396/691 (57%), Gaps = 36/691 (5%)

Query: 35  IHSQTIKLGLL-TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           I+   +K G L  +  V  +L+       GD+  A KVF K+P  ++  W  MI  ++++
Sbjct: 150 IYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQL 209

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
              ++ + ++LDM  S   PD +T+  +L   T    +  GK+LH  V++ G    V V 
Sbjct: 210 GCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVG 269

Query: 154 NALISTYCLC---GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD-ETRKLFGEMER 209
            +L+  Y  C   G VD +R +F+   + +V++W A+ + Y +  + D E  +LF +M  
Sbjct: 270 CSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS 329

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
             + P   +   VL AC  L D   G++ + Y  +  I     + N+L  MYA  G M  
Sbjct: 330 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRM-- 387

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
                                        + AR+ FD + E++ V + A++DGY +  + 
Sbjct: 388 -----------------------------EDARKAFDILFEKNLVSYNAIVDGYAKNLKS 418

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
            EA  LF E+  + I    FT  S+L+  A++GA+  GE +   + K   K++  + NAL
Sbjct: 419 EEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNAL 478

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           I MY +CG++E A +VF EM  ++  +WT+MI G A +G   ++L+MF +ML     P+E
Sbjct: 479 ISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE 538

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
           +TYV VLSAC+H GM+ EG+++F  M  +HGI P   HY CMVDLLGR+G L EA+E I 
Sbjct: 539 ITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN 598

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
           +MP+  +++VW  LLGACRVH + E+   AA+ ILE +PD+ A Y+LL N++A+  +W +
Sbjct: 599 SMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKD 658

Query: 570 FRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGY 629
             ++R+ + +R + K  GCS IE+   VH F  G+ SHPQ  +IY +LD++ S +K +GY
Sbjct: 659 VVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGY 718

Query: 630 MPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKL 689
           +PD   V  D+ EE KE+ ++QHSEK+A+AFGLIS+     IRI KNLR+C DCH   K 
Sbjct: 719 IPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKY 778

Query: 690 VSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +SM   RE++VRD  RFHH K+G CSC DYW
Sbjct: 779 ISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 142/566 (25%), Positives = 263/566 (46%), Gaps = 43/566 (7%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           + P  LT  + L+       +    K +H + ++ GL  +  V N L++   S+ GD + 
Sbjct: 21  NAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLY-SKCGDTET 79

Query: 68  ACKVFRKIP-RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           A  +F  +  +  +  W+ M+  ++        +  +LDML+    P+ Y F  +++  +
Sbjct: 80  ARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACS 139

Query: 127 RDIAVEFGKELHCHVLKFGF-DSSVFVQNALISTYCL-CGEVDMARGIFDVSYKDDVVTW 184
                  G+ ++  V+K G+ ++ V V   LI  +    G++  A  +FD   + ++VTW
Sbjct: 140 NANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTW 199

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
             M + + ++    +   LF +ME  G +P   T   VLSAC +L  L +GK+ H  V  
Sbjct: 200 TLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIR 259

Query: 245 CKIVPNLILENALTDMYAAC---GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
             +  ++ +  +L DMYA C   G +  + ++F  +   +V+SWTAI+T Y+  G+ D  
Sbjct: 260 LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECD-- 317

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                       +EA+ LF +M + +IRP+ F+  S+L AC NL
Sbjct: 318 ----------------------------KEAIELFCKMISGHIRPNHFSFSSVLKACGNL 349

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
                GE V +Y  K  + +   VGN+LI MY + G +E A++ F  +  K+  ++ A++
Sbjct: 350 SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIV 409

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G A N   +++  +F+++    I     T+  +LS     G + +G +    + ++ G 
Sbjct: 410 DGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-LKGGY 468

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAA 540
           + N+     ++ +  R G++  A +V   M  + N I W +++     H  A  A EM  
Sbjct: 469 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFH 527

Query: 541 KQILELDPDNEAVYVLLCNIYAACNR 566
           K +      NE  YV    + +AC+ 
Sbjct: 528 KMLETGTKPNEITYVA---VLSACSH 550



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 194/406 (47%), Gaps = 39/406 (9%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           M + +  PD  T+  LLK   R    + GK +H  +++ G +    V N LIS Y  CG+
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 76

Query: 166 VDMARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
            + AR IF+ +  K D+V+W+AM S +       +    F +M   G  P       V+ 
Sbjct: 77  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 136

Query: 225 ACAKLKDLDVGKRAHRY-VKECKIVPNLILENALTDMYA-ACGEMGFALEIFGNIKNKDV 282
           AC+      VG+  + + VK   +  ++ +   L DM+    G++G A ++F  +  +++
Sbjct: 137 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 196

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           ++WT ++T +   G                                 R+A+ LF +M+ S
Sbjct: 197 VTWTLMITRFAQLGCA-------------------------------RDAIDLFLDMELS 225

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC---GDV 399
              PD FT  S+L+AC  LG L LG+ + + + +  +  D+ VG +L+DMY KC   G V
Sbjct: 226 GYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV 285

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK-SLDMFSQMLRASIIPDEVTYVGVLSA 458
           + +++VF +M   +  +WTA+I     +G  DK ++++F +M+   I P+  ++  VL A
Sbjct: 286 DDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKA 345

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           C +      G + ++   ++ GI         ++ +  R+G + +A
Sbjct: 346 CGNLSDPYTGEQVYS-YAVKLGIASVNCVGNSLISMYARSGRMEDA 390



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 149/336 (44%), Gaps = 31/336 (9%)

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
           L V R   A +    M   N  PD  T   +L +C      +LG+ V   + ++ ++ D 
Sbjct: 2   LDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDS 61

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
            V N LI +Y KCGD E A+ +F  M  ++D  +W+AM+   A N    +++  F  ML 
Sbjct: 62  VVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 121

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MVDLLGR-AGH 500
               P+E  +  V+ AC++      G E      ++ G    +   GC ++D+  + +G 
Sbjct: 122 LGFYPNEYCFAAVIRACSNANYAWVG-EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGD 180

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE-AVYV---- 555
           L  A +V   MP + N + W  +     + R A++    A+  ++L  D E + YV    
Sbjct: 181 LGSAYKVFDKMPER-NLVTWTLM-----ITRFAQLG--CARDAIDLFLDMELSGYVPDRF 232

Query: 556 LLCNIYAACNRWDNF---RELRQMILDRGIK--KTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              ++ +AC         ++L   ++  G+      GCS+++M    +   A D S   +
Sbjct: 233 TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDM----YAKCAADGSVDDS 288

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKE 646
           ++++ ++ E       V     I   ++  GE DKE
Sbjct: 289 RKVFEQMPEHN-----VMSWTAIITAYVQSGECDKE 319


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/597 (39%), Positives = 378/597 (63%), Gaps = 14/597 (2%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGE----------VDMARGIFDVSYKDDVVTW 184
           K +H  +L+    S VFV + L++   LC +          +  A GIF      ++  +
Sbjct: 29  KIIHGFLLRTHLISDVFVASRLLA---LCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVF 85

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N +   +    +  +    + +M +  + P ++T   ++ A ++++ + VG++ H  +  
Sbjct: 86  NLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVR 145

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                ++ +EN+L  MYA CG +  A  IFG +  +DV+SWT++V GY   G V+ AR+ 
Sbjct: 146 FGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREM 205

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           FD+MP R+   W+ MI+GY + N F +A+ LF  M+   +  +E  +VS++++CA+LGAL
Sbjct: 206 FDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGAL 265

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           E GE    Y+ K+ +  ++ +G AL+DM+ +CGD+EKA  VF  +   D  +W+++I GL
Sbjct: 266 EFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGL 325

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A++GH  K++  FSQM+    IP +VT+  VLSAC+H G+V++G E + +M   HGIEP 
Sbjct: 326 AVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPR 385

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGC+VD+LGRAG L EA   I  M +KPN+ + GALLGAC+++++ E+AE     ++
Sbjct: 386 LEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLI 445

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG- 603
           ++ P++   YVLL NIYA   +WD    LR M+ ++ +KK PG S+IE++G +++F  G 
Sbjct: 446 KVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGD 505

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           D+ HP+  +I  K +E+   ++ +GY  +  + F DV EE+KE +++ HSEKLA+A+G++
Sbjct: 506 DQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMM 565

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + PG TIRIVKNLR+C DCH + KL+S VY RE+IVRD+ RFHHF++G CSC+DYW
Sbjct: 566 KTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 207/437 (47%), Gaps = 69/437 (15%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK---- 66
           +TL  + P ++ +++C S   LK IH   ++  L+++  V ++L+  C  +    K    
Sbjct: 7   NTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNL 66

Query: 67  --YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
             YA  +F +I  P++ ++N +I+ +S           Y  MLKS + PDN TFPFL+K 
Sbjct: 67  LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL---------------------------- 156
            +    V  G++ H  +++FGF + V+V+N+L                            
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSW 186

Query: 157 ---ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
              ++ YC CG V+ AR +FD     ++ TW+ M +GY +   F++   LF  M+R+GV+
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
                +V V+S+CA L  L+ G+RA+ YV +  +  NLIL  AL DM+  CG++  A+ +
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHV 306

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +   D +SW++I+ G    G    A  YF QM    ++                   
Sbjct: 307 FEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFI------------------- 347

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK-VKNDIFVGNALIDM 392
                       P + T  ++L+AC++ G +E G  +   + K+  ++  +     ++DM
Sbjct: 348 ------------PRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDM 395

Query: 393 YCKCGDVEKAQRVFREM 409
             + G + +A+    +M
Sbjct: 396 LGRAGKLAEAENFILKM 412


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/694 (37%), Positives = 388/694 (55%), Gaps = 33/694 (4%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S+H  +Q+H   +K G     +V N LV F    +  +  A KVF ++    V  WN++I
Sbjct: 210 SVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQ-RVDSARKVFDEMTERDVISWNSII 268

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
            GY      + G+ +++ ML S +  D  T   +  G      +  G+ +H   +K  F 
Sbjct: 269 NGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS 328

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
                 N L+  Y  CG++D A+ +F       VV++ +M +GY R     E  KLF EM
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 388

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           E +G+ P   T+  VL+ CA+ + LD GKR H ++KE  +  ++ + NAL DMYA CG M
Sbjct: 389 EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 448

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
                                            A   F +M  +D + W  +I GY +  
Sbjct: 449 -------------------------------QEAELVFSEMRVKDIISWNTIIGGYSKNC 477

Query: 328 RFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
              EAL+LF  + +     PDE T+  +L ACA+L A + G  +  YI +N   +D  V 
Sbjct: 478 YANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 537

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           N+L+DMY KCG +  A  +F ++  KD  +WT MI G  ++G G +++ +F+QM +A I 
Sbjct: 538 NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 597

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
            DE+++V +L AC+H+G+VDEG  +F  M  +  IEP   HY C+VD+L R G L +A  
Sbjct: 598 ADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYR 657

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
            I+NMP+ P++ +WGALL  CR+H D ++AE  A+++ EL+P+N   YVL+ NIYA   +
Sbjct: 658 FIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEK 717

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           W+  + LR+ I  RG++K PGCS IE+ G V+ FVAGD S+P+T+ I   L ++ + +  
Sbjct: 718 WEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 777

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            GY P      +D  E +KE A+  HSEKLAMA G+ISSG G  IR+ KNLR+C DCH M
Sbjct: 778 EGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEM 837

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           AK +S +  RE+++RD  RFH FK G CSC+ +W
Sbjct: 838 AKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 171/443 (38%), Gaps = 88/443 (19%)

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T+  VL  CA  K L  GK    +++    V +  L + L+ MY  CG++  A  +F  +
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQM----------------------------- 308
           K +  + W  ++      G    +   F +M                             
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215

Query: 309 -----------PERDYVLWTAMIDGYLRVNRFREALTLFREMQ----------------- 340
                       ER+ V   +++  YL+  R   A  +F EM                  
Sbjct: 216 QLHGFILKSGFGERNSV-GNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSN 274

Query: 341 --------------TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
                          S I  D  TIVS+   CA+   + LG  V +   K     +    
Sbjct: 275 GLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC 334

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           N L+DMY KCGD++ A+ VFREM  +   ++T+MI G A  G   +++ +F +M    I 
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY-----GCMVDLLGRAGHL 501
           PD  T   VL+ C    ++DEG+       +   I+ N+  +       ++D+  + G +
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEGKR------VHEWIKENDLGFDIFVSNALMDMYAKCGSM 448

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE---LDPDNEAVYVLLC 558
            EA  V   M +K + I W  ++G    +  A  A      +LE     PD   V  +L 
Sbjct: 449 QEAELVFSEMRVK-DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVL- 506

Query: 559 NIYAACNRWDNFRELRQMILDRG 581
              A+ + +D  RE+   I+  G
Sbjct: 507 PACASLSAFDKGREIHGYIMRNG 529



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 2/178 (1%)

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           D  T+ S+L  CA+  +L+ G+ V  +I  N    D  +G+ L  MY  CGD+++A RVF
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
            E+  +    W  ++  LA +G    S+ +F +M+ + +  D  T+  V  + +    V 
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV- 211

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
            G E      ++ G     +    +V    +   ++ A +V   M  + + I W +++
Sbjct: 212 HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER-DVISWNSII 268


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/694 (37%), Positives = 388/694 (55%), Gaps = 33/694 (4%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S+H  +Q+H   +K G     +V N LV F    +  +  A KVF ++    V  WN++I
Sbjct: 59  SVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQ-RVDSARKVFDEMTERDVISWNSII 117

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
            GY      + G+ +++ ML S +  D  T   +  G      +  G+ +H   +K  F 
Sbjct: 118 NGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS 177

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
                 N L+  Y  CG++D A+ +F       VV++ +M +GY R     E  KLF EM
Sbjct: 178 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 237

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           E +G+ P   T+  VL+ CA+ + LD GKR H ++KE  +  ++ + NAL DMYA CG M
Sbjct: 238 EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 297

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
                                            A   F +M  +D + W  +I GY +  
Sbjct: 298 -------------------------------QEAELVFSEMRVKDIISWNTIIGGYSKNC 326

Query: 328 RFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
              EAL+LF  + +     PDE T+  +L ACA+L A + G  +  YI +N   +D  V 
Sbjct: 327 YANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 386

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           N+L+DMY KCG +  A  +F ++  KD  +WT MI G  ++G G +++ +F+QM +A I 
Sbjct: 387 NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 446

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
            DE+++V +L AC+H+G+VDEG  +F  M  +  IEP   HY C+VD+L R G L +A  
Sbjct: 447 ADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYR 506

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
            I+NMP+ P++ +WGALL  CR+H D ++AE  A+++ EL+P+N   YVL+ NIYA   +
Sbjct: 507 FIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEK 566

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           W+  + LR+ I  RG++K PGCS IE+ G V+ FVAGD S+P+T+ I   L ++ + +  
Sbjct: 567 WEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 626

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            GY P      +D  E +KE A+  HSEKLAMA G+ISSG G  IR+ KNLR+C DCH M
Sbjct: 627 EGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEM 686

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           AK +S +  RE+++RD  RFH FK G CSC+ +W
Sbjct: 687 AKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 1/208 (0%)

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           FD++     + W  +++   +   F  ++ LF++M +S +  D +T   +  + ++L ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
             GE +  +I K+       VGN+L+  Y K   V+ A++VF EM  +D  +W ++I G 
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
             NG  +K L +F QML + I  D  T V V + C  + ++  GR   + + ++      
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS-IGVKACFSRE 179

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           +     ++D+  + G L+ A  V + M 
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMS 207


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/542 (43%), Positives = 349/542 (64%), Gaps = 6/542 (1%)

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD----VGKRAHR 240
           +A+     R  +      L+  + R G+LPT  T+  +L + A    +     +    H 
Sbjct: 41  DALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHT 100

Query: 241 YVKECKIVPNLILENALTDMYAA-CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
           +  +  +   +++ NAL  ++A   G +   L +       D  ++  ++T Y   G++ 
Sbjct: 101 HAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLA 160

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
            AR  FD+MP R+ V W+AM++GY++    REAL +F  MQ  ++RPD+  +V +L ACA
Sbjct: 161 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACA 220

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
             GALE G+WV  Y+  + +K ++F G AL+DMY KCG+V+ A  VF  M  K+   WT 
Sbjct: 221 QHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTT 280

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           MI GLA++G G +++ +F+QM  + I PD++ ++GVL ACTH G+VD+GRE F  M  ++
Sbjct: 281 MIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKY 340

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           GI+P   HYGCMVDLL R G L EA E+I+ MPM+P++++WGAL+  CR H++ E AE  
Sbjct: 341 GIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYV 400

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
           AK  + L+PD    YVLL NIYAA  R  + RE+R ++ ++G+ KTPGCS +E+NGV+H+
Sbjct: 401 AKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQ 460

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKF-VGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
           F+ GD SHP+ K+I  K  E+ + ++   GY+PD+ EV LD+ EE+KE A+ +HSEKLA+
Sbjct: 461 FIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAI 520

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           AF LIS    + IRI KNLR+C DCH + KL+S VY RE++VRD+TRFH FK G+CSCKD
Sbjct: 521 AFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKD 580

Query: 719 YW 720
           YW
Sbjct: 581 YW 582



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 174/388 (44%), Gaps = 70/388 (18%)

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           ++PR SV L + +I+  SR       + +Y  +L++ + P  +T P LLK      AV  
Sbjct: 32  QLPR-SVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPG 90

Query: 134 GKEL----HCHVLKFGFDSSVFVQNA--------------------------------LI 157
              L    H H +K G D  V V NA                                LI
Sbjct: 91  AAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLI 150

Query: 158 STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
           + Y   G +  AR +FD     + V+W+AM +GY +     E  ++F  M+ + V P   
Sbjct: 151 TAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDT 210

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
            +V VL+ACA+   L+ GK  H Y+K   I  NL    AL DMY+ CGE+  A+++F  +
Sbjct: 211 VLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERM 270

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
           + K+V++WT ++ G    G                               R  EA+ LF 
Sbjct: 271 QYKNVLAWTTMIKGLAMHG-------------------------------RGSEAVMLFA 299

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
           +M++S IRPD+   + +L AC + G ++ G E   + + K  +K  I     ++D+  + 
Sbjct: 300 QMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARN 359

Query: 397 GDVEKAQRVFREM-LRKDKFTWTAMIVG 423
           G + +A+ + ++M +  D   W A++ G
Sbjct: 360 GFLYEAKEMIQKMPMEPDALIWGALMAG 387



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 9/295 (3%)

Query: 52  NKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV 111
           N L+T   +  G +  A  +F ++P  +   W+ M+ GY +    +  + I+  M   DV
Sbjct: 147 NTLIT-AYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDV 205

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
           RPD+     +L    +  A+E GK +H ++   G   ++F   AL+  Y  CGEV +A  
Sbjct: 206 RPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMD 265

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +F+     +V+ W  M  G     +  E   LF +ME  G+ P  +  + VL AC     
Sbjct: 266 VFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGL 325

Query: 232 LDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIV 289
           +D G+      V++  I P +     + D+ A  G +  A E+   +    D + W A++
Sbjct: 326 VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALM 385

Query: 290 TGYINRGQVD----MARQYFDQMPERD--YVLWTAMIDGYLRVNRFREALTLFRE 338
            G      V+    +A+ +    P++   YVL + +     R    RE   L RE
Sbjct: 386 AGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMRE 440


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/572 (42%), Positives = 363/572 (63%), Gaps = 16/572 (2%)

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVL 223
           ++D AR IF   ++ +  ++N +           +   +F EM E   V P   T   V 
Sbjct: 60  DLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVF 119

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF--------- 274
            AC + + L  G++ H    +  +  +  + + +  MY +CG M  A  +F         
Sbjct: 120 KACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGC 179

Query: 275 GNIKNK------DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
             I++K      DV+ W  ++ GY+  G++++AR  FD+MP+R  V W  MI GY +   
Sbjct: 180 DGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGH 239

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           F+EA+ +FREMQ + + P+  T+VS+L A + LGALELG+WV  Y  +N +  D  +G+A
Sbjct: 240 FKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSA 299

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDMY KCG +EKA +VF  + +++  TW+ +I GLA++G    +LD F  M RA ++P 
Sbjct: 300 LIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPS 359

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
           +VTY+G+LSAC+H G+V+EGR +F  M    G+EP   HYGCMVDLLGRAG L E+ E+I
Sbjct: 360 DVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELI 419

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
            NMP+KP+ ++W ALLGAC++H + EM +  A+ ++EL P +   YV L NIYA+   W+
Sbjct: 420 LNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWE 479

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
              ++R M+ +  ++K PGCS IE++GV+HEF+  D SHP++K+I+  L EM+ +L  VG
Sbjct: 480 GVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVG 539

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           Y P+ ++V  ++ EEDKE ++  HSEK+A+AFGLIS+ P   +RI KNLR+C DCH   K
Sbjct: 540 YRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIK 599

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           L+S +Y R++IVRD+ RFHHF +GSCSC DYW
Sbjct: 600 LISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 223/477 (46%), Gaps = 91/477 (19%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SE 61
           S +S+ PPS+             C++M  LKQ+H+Q IK   + +P    +L+ F   S+
Sbjct: 8   STTSLWPPSSFF----------PCKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSD 57

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPF 120
             D+ YA K+FR + RP+   +NT+I+  S  +   + +L++++M++   V P+ +TFP 
Sbjct: 58  HRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPS 117

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV---------------------------- 152
           + K   R   +  G+++H   +KFG DS  FV                            
Sbjct: 118 VFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVD 177

Query: 153 ------------------QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
                              N +I  Y   GE+++AR +FD   +  VV+WN M +GY + 
Sbjct: 178 GCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQS 237

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
             F E  ++F EM+   V P  VT+V VL A ++L  L++GK  H Y     I  + +L 
Sbjct: 238 GHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG 297

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           +AL DMYA CG +  AL++F  +  ++V++W+ I+ G    G                  
Sbjct: 298 SALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHG------------------ 339

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
                        R ++ L  F +M+ + + P + T + +L+AC++ G +  G W   ++
Sbjct: 340 -------------RAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHM 386

Query: 375 DK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
            + + ++  I     ++D+  + G +E+++ +   M ++ D   W A++    ++G+
Sbjct: 387 VRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGN 443



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 145/291 (49%), Gaps = 7/291 (2%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G+++ A  +F ++P+ SV  WN MI GY++    K  V ++ +M  ++V P+  T   +L
Sbjct: 207 GELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVL 266

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
              +R  A+E GK +H + ++        + +ALI  Y  CG ++ A  +F+   K +VV
Sbjct: 267 PAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVV 326

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY- 241
           TW+ + +G     +  +T   F +MER GV+P+ VT + +LSAC+    ++ G+    + 
Sbjct: 327 TWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHM 386

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVTGYINRGQVD 299
           V+   + P +     + D+    G +  + E+  N  IK  DVI W A++      G V+
Sbjct: 387 VRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVI-WKALLGACKMHGNVE 445

Query: 300 MARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           M ++  + + E    D   + A+ + Y  +  +     +   M+  ++R D
Sbjct: 446 MGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKD 496


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/594 (41%), Positives = 372/594 (62%), Gaps = 10/594 (1%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM----ARGIFDVSYKDDVVTWNAMFSG 190
           K++H HVL+ G D S ++   LI T    G V M     R I  V +++  + W A+  G
Sbjct: 67  KQIHGHVLRKGLDQSCYILTKLIRTLTKLG-VPMDPYPRRVIEPVQFRNPFL-WTAVIRG 124

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y    +FDE   ++G M ++ + P S T   +L AC  + DL++G++ H      +    
Sbjct: 125 YTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCF 184

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           + + N + DMY  CG +  A ++F  +  +DVISWT ++  Y   G ++ A   F+ +P 
Sbjct: 185 VYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPT 244

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           +D V WTAM+ G+ +  + +EAL  F  M+ S IR DE T+   ++ACA LGA +  +  
Sbjct: 245 KDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRA 304

Query: 371 KTYIDKN--KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
                K+     + + +G+ALIDMY KCG+VE+A  VF  M  K+ F++++MI+GLA +G
Sbjct: 305 VQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHG 364

Query: 429 HGDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
              ++LD+F  M+ + +I P+ VT+VG L+AC+H+G+VD+GR+ FA M    G+EP   H
Sbjct: 365 RAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDH 424

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y CMVDLLGRAG L EALE+IK M ++P+  VWGALLGACR+H + ++AE+AA+ + EL+
Sbjct: 425 YTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELE 484

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS-MIEMNGVVHEFVAGDKS 606
           PD    Y+LL N+Y++   W     +R++I ++G+KKTP  S +++ NG +H+F  G+ +
Sbjct: 485 PDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLN 544

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           HP +K+I  KL+E+   L  +GY PD+S V  DV +  K   + QH+EKLA+AF L+++ 
Sbjct: 545 HPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTN 604

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              TI+I+KNLRMC DCH   +L S V  R +I+RD  RFHHF+ G+CSC D+W
Sbjct: 605 RDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 197/454 (43%), Gaps = 72/454 (15%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM-KYACKVFRKI 75
           + LIS ++ C +++Q+KQIH   ++ GL  +  +  KL+         M  Y  +V   +
Sbjct: 51  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPV 110

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              +  LW  +I+GY+        + +Y  M K ++ P ++TF  LLK       +  G+
Sbjct: 111 QFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGR 170

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           + H    +      V+V N +I  Y  CG +  AR +FD   + DV++W  + + Y RV 
Sbjct: 171 QFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVG 230

Query: 196 QFD-------------------------------ETRKLFGEMERKGVLPTSVTIVLVLS 224
             +                               E  + F  ME+ G+    VT+   +S
Sbjct: 231 NMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYIS 290

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPN--LILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           ACA+L       RA +  ++    P+  +++ +AL DMY+ CG +  A+ +F ++ NK+V
Sbjct: 291 ACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNV 350

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT- 341
            S+++++ G    G                               R +EAL LF  M T 
Sbjct: 351 FSYSSMILGLATHG-------------------------------RAQEALDLFHYMVTQ 379

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN---KVKNDIFVGNALIDMYCKCGD 398
           + I+P+  T V  LTAC++ G ++ G  V   + +    +   D +    ++D+  + G 
Sbjct: 380 TAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYT--CMVDLLGRAGR 437

Query: 399 VEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
           +++A  + + M +      W A++    I+ + D
Sbjct: 438 LQEALELIKTMSVEPHGGVWGALLGACRIHNNPD 471


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/719 (36%), Positives = 389/719 (54%), Gaps = 38/719 (5%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEK 62
           SS   P  L   T L+        +   + +H+Q    G+ +       L      C   
Sbjct: 51  SSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRP 110

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFL 121
            D +   +VF ++P      WN ++ GY+R    +  + + + M + +  RPD+ T   +
Sbjct: 111 ADAR---RVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSV 167

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L       A+   +E H   ++ G +  V V  A++  YC CG++  AR +FD     + 
Sbjct: 168 LPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNS 227

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           V+WNAM  GY +     E   LF  M  +GV  T V+++  L AC +L  LD G R H  
Sbjct: 228 VSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHEL 287

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           +    +  N+ + NAL  MY+ C                                +VD+A
Sbjct: 288 LVRIGLDSNVSVMNALITMYSKCK-------------------------------RVDLA 316

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
              FD++  R  V W AMI G  +     +A+ LF  MQ  N++PD FT+VS++ A A++
Sbjct: 317 SHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADI 376

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
                  W+  Y  +  +  D++V  ALIDMY KCG V  A+ +F     +   TW AMI
Sbjct: 377 SDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMI 436

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G   +G G  ++++F +M    I+P+E T++ VLSAC+H G+VDEGREYF  M   +G+
Sbjct: 437 HGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGL 496

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           EP   HYG MVDLLGRAG L+EA   I+ MPM P   V+GA+LGAC++H++ E+AE +A+
Sbjct: 497 EPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQ 556

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           +I EL P     +VLL NIYA  + W +   +R  +   G++KTPG S+I++   +H F 
Sbjct: 557 KIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFY 616

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
           +G  +H Q KEIY +L ++  ++K VGY+PD   +  DV ++ K + +  HSEKLA+AFG
Sbjct: 617 SGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIH-DVEDDVKAQLLNTHSEKLAIAFG 675

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LI + PG TI+I KNLR+C DCH   KL+S+V  RE+I+RD  RFHHFK G CSC DYW
Sbjct: 676 LIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 142/324 (43%), Gaps = 32/324 (9%)

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           F  M   G  P   T   +L  CA   DL  G+  H  +    I    +   AL +MYA 
Sbjct: 47  FVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAK 106

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           C     A  +F  +  +D ++W A+V GY   G   MA +   +M E +           
Sbjct: 107 CRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEE----------- 155

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
                                RPD  T+VS+L ACAN  AL        +  ++ ++  +
Sbjct: 156 -------------------GERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELV 196

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
            V  A++D YCKCGD+  A+ VF  M  K+  +W AMI G A NG   ++L +F++M+  
Sbjct: 197 NVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEE 256

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            +   +V+ +  L AC   G +DEG     ++ ++ G++ N +    ++ +  +   ++ 
Sbjct: 257 GVDVTDVSVLAALQACGELGCLDEGMRVH-ELLVRIGLDSNVSVMNALITMYSKCKRVDL 315

Query: 504 ALEVIKNMPMKPNSIVWGALLGAC 527
           A  V   +  +   + W A++  C
Sbjct: 316 ASHVFDELDRR-TQVSWNAMILGC 338



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 100/226 (44%), Gaps = 3/226 (1%)

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL  F  M ++   P   T  S+L  CA  G L  G  V   +    + ++     AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML-RASIIPDEV 450
           MY KC     A+RVF  M  +D+  W A++ G A NG    +++M  +M       PD +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T V VL AC +   +   RE  A   I+ G+E        ++D   + G +  A  V   
Sbjct: 163 TLVSVLPACANARALAACREAHA-FAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDW 221

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           MP K NS+ W A++     + D+  A     +++E   D   V VL
Sbjct: 222 MPTK-NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL 266


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/594 (41%), Positives = 361/594 (60%), Gaps = 38/594 (6%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG-IFDVSYKD-------DVVTWNAM 187
           ++H  +LK G  ++  +     ST      +  A   +F  S+         D   +N +
Sbjct: 36  QIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDAFLFNTL 95

Query: 188 FSGYKRVKQFDETRKLF-GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
              Y + +       LF   M R GV P   T   VL  CA +  L +GK  H  V +  
Sbjct: 96  IRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFG 155

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              ++ + N L  MY   GE GF                             + A + FD
Sbjct: 156 FEEDVHVLNTLIHMYCCLGEDGF-----------------------------EFAEKVFD 186

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
             P+ D V W+AMI G++R+     A+ LFREMQ   + PDE T+VS+L+ACA+LGALEL
Sbjct: 187 DSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALEL 246

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+WV++Y++K  +   + + NALIDM+ KCG+V+KA ++FR+M  +   +WT++I GLA+
Sbjct: 247 GKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAM 306

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G  ++ +F +M+   I PD+V ++GVLSAC+H+G+VD+GR YF  M     I P   
Sbjct: 307 HGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVE 366

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HYGCMVDLL R G + EA E ++ MP +PN I+W  ++ AC    + ++ E  +K++++ 
Sbjct: 367 HYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKS 426

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           +P +E+ YVLL NIYA   +W+   ++R+M+  RG+KK PG +MIE+N  ++EFVAGDKS
Sbjct: 427 EPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKS 486

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           H Q KEIY  +DEM  ++K  GY+P  S+V LD+ EEDKE A+Y+HSEKLA+AF L+++ 
Sbjct: 487 HDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTP 546

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           PG +IRIVKNLR+C DCH   K +S VY+RE++VRD+ RFHHFK+G CSC+D+W
Sbjct: 547 PGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/719 (36%), Positives = 389/719 (54%), Gaps = 38/719 (5%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEK 62
           SS   P  L   T L+        +   + +H+Q    G+ +       L      C   
Sbjct: 51  SSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRP 110

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFL 121
            D +   +VF ++P      WN ++ GY+R    +  + + + M + +  RPD+ T   +
Sbjct: 111 ADAR---RVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSV 167

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L       A+   +E H   ++ G +  V V  A++  YC CG++  AR +FD     + 
Sbjct: 168 LPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNS 227

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           V+WNAM  GY +     E   LF  M  +GV  T V+++  L AC +L  LD G R H  
Sbjct: 228 VSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHEL 287

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           +    +  N+ + NAL  MY+ C                                +VD+A
Sbjct: 288 LVRIGLDSNVSVMNALITMYSKCK-------------------------------RVDLA 316

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
              FD++  R  V W AMI G  +     +A+ LF  MQ  N++PD FT+VS++ A A++
Sbjct: 317 SHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADI 376

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
                  W+  Y  +  +  D++V  ALIDMY KCG V  A+ +F     +   TW AMI
Sbjct: 377 SDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMI 436

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G   +G G  ++++F +M    I+P+E T++ VLSAC+H G+VDEGREYF  M   +G+
Sbjct: 437 HGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGL 496

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           EP   HYG MVDLLGRAG L+EA   I+ MPM P   V+GA+LGAC++H++ E+AE +A+
Sbjct: 497 EPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQ 556

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           +I EL P     +VLL NIYA  + W +   +R  +   G++KTPG S+I++   +H F 
Sbjct: 557 KIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFY 616

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
           +G  +H Q KEIY +L ++  ++K VGY+PD   +  DV ++ K + +  HSEKLA+AFG
Sbjct: 617 SGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIH-DVEDDVKAQLLNTHSEKLAIAFG 675

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LI + PG TI+I KNLR+C DCH   KL+S+V  RE+I+RD  RFHHFK G CSC DYW
Sbjct: 676 LIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 142/324 (43%), Gaps = 32/324 (9%)

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           F  M   G  P   T   +L  CA   DL  G+  H  +    I    +   AL +MYA 
Sbjct: 47  FVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAK 106

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           C     A  +F  +  +D ++W A+V GY   G   MA +   +M E +           
Sbjct: 107 CRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEE----------- 155

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
                                RPD  T+VS+L ACAN  AL        +  ++ ++  +
Sbjct: 156 -------------------GERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELV 196

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
            V  A++D YCKCGD+  A+ VF  M  K+  +W AMI G A NG   ++L +F++M+  
Sbjct: 197 NVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEE 256

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            +   +V+ +  L AC   G +DEG     ++ ++ G++ N +    ++ +  +   ++ 
Sbjct: 257 GVDVTDVSVLAALQACGELGCLDEGMRVH-ELLVRIGLDSNVSVMNALITMYSKCKRVDL 315

Query: 504 ALEVIKNMPMKPNSIVWGALLGAC 527
           A  V   +  +   + W A++  C
Sbjct: 316 ASHVFDELDRR-TQVSWNAMILGC 338



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 100/226 (44%), Gaps = 3/226 (1%)

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL  F  M ++   P   T  S+L  CA  G L  G  V   +    + ++     AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML-RASIIPDEV 450
           MY KC     A+RVF  M  +D+  W A++ G A NG    +++M  +M       PD +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T V VL AC +   +   RE  A   I+ G+E        ++D   + G +  A  V   
Sbjct: 163 TLVSVLPACANARALAACREAHA-FAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDW 221

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           MP K NS+ W A++     + D+  A     +++E   D   V VL
Sbjct: 222 MPTK-NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL 266


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/706 (37%), Positives = 397/706 (56%), Gaps = 72/706 (10%)

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-VEFGKELHCHVLKF 144
           M+ G++++  + N    + ++++   RPDNYT PF+++   RD+  ++ G+ +H  V KF
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA-CRDLKNLQMGRLIHHIVYKF 59

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           G D   FV  AL+  Y  C E++ AR +FD   + D+VTW  M  GY    + +E+  LF
Sbjct: 60  GLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-------------------EC 245
            +M  +GV+P  V +V V+ ACAKL  +   +    Y++                   +C
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 246 KIV------------PNLILENALTDMYAACGEMGFALEIF------------------- 274
             V             N+I  +A+   Y   G+   AL++F                   
Sbjct: 180 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 239

Query: 275 ---GNIKNK-----------------DVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
               ++KN                  D     A+V  Y    +++ AR  FD+MPERD V
Sbjct: 240 YACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLV 299

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            WT MI GY       E+L LF +M+   + PD+  +V+++ ACA LGA+     +  YI
Sbjct: 300 TWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYI 359

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            + K + D+ +G A+IDM+ KCG VE A+ +F  M  K+  +W+AMI     +G G K+L
Sbjct: 360 QRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKAL 419

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           D+F  MLR+ I+P+++T V +L AC+H G+V+EG  +F+ M   + +  +  HY C+VDL
Sbjct: 420 DLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDL 479

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L+EAL++I++M ++ +  +WGA LGACR H+D  +AE AA  +LEL P N   Y
Sbjct: 480 LGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHY 539

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           +LL NIYA   RW++  + R ++  R +KK PG + IE++   H+F  GD +HP++KEIY
Sbjct: 540 ILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIY 599

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L  + + L+ VGY+PD + V  DV EE K   +Y HSEKLA+AFGLI++     IRI+
Sbjct: 600 EMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRII 659

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+C DCH   KLVS +  R +IVRD  RFHHFK G+CSC DYW
Sbjct: 660 KNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 177/361 (49%), Gaps = 33/361 (9%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A ++F ++   +V  W+ MI  Y      +  + ++  ML S + PD  T   LL
Sbjct: 180 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 239

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
              +    ++ G+ +H  V KFG D   FV  AL+  Y  C E++ AR +FD   + D+V
Sbjct: 240 YACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLV 299

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           TW  M  GY      +E+  LF +M  +GV+P  V +V V+ ACAKL  +   +    Y+
Sbjct: 300 TWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYI 359

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
           +  K   ++IL  A+ DM+A CG +  A EIF  ++ K+VISW+A++  Y   GQ     
Sbjct: 360 QRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ----- 414

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                      R+AL LF  M  S I P++ T+VS+L AC++ G
Sbjct: 415 --------------------------GRKALDLFPMMLRSGILPNKITLVSLLYACSHAG 448

Query: 363 ALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAM 420
            +E G  +     +   V+ D+     ++D+  + G +++A ++   M + KD+  W A 
Sbjct: 449 LVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAF 508

Query: 421 I 421
           +
Sbjct: 509 L 509



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 152/358 (42%), Gaps = 46/358 (12%)

Query: 13  LTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKY 67
           L  +  L S +  C  +  L+    IH    K GL  +  V   LV     C E  D ++
Sbjct: 229 LPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARF 288

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
              +F K+P   +  W  MI GY+   +    ++++  M +  V PD      ++    +
Sbjct: 289 ---LFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAK 345

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             A+   + +  ++ +  F   V +  A+I  +  CG V+ AR IFD   + +V++W+AM
Sbjct: 346 LGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAM 405

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            + Y    Q  +   LF  M R G+LP  +T+V +L AC+    ++ G R          
Sbjct: 406 IAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFF-------- 457

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             +L+ E+     Y+                  DV  +T +V      G++D A +  + 
Sbjct: 458 --SLMWED-----YSV---------------RADVKHYTCVVDLLGRAGRLDEALKLIES 495

Query: 308 MP-ERDYVLWTAMIDGYLRVNR----FREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           M  E+D  LW A + G  R ++      +A T   E+Q  N  P  + ++S + A A 
Sbjct: 496 MTVEKDEGLWGAFL-GACRTHKDVVLAEKAATSLLELQPQN--PGHYILLSNIYANAG 550


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/688 (36%), Positives = 397/688 (57%), Gaps = 34/688 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           ++IH   I  G  +N  V   +++     +  +  A K+F ++    +  W T++ GY++
Sbjct: 165 REIHGLIITNGFESNLFVMTAVMSLYAKCR-QIDNAYKMFERMQHKDLVSWTTLVAGYAQ 223

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               K  + + L M ++  +PD+ T   +L       A+  G+ +H +  + GF+S V V
Sbjct: 224 NGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNV 283

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL+  Y  CG   +AR +F       VV+WN M  G  +  + +E    F +M  +G 
Sbjct: 284 TNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGE 343

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
           +PT VT++ VL ACA L DL+ G   H+ + + K+  N+ + N+L  MY+ C  +  A  
Sbjct: 344 VPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAAS 403

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           IF N+                                E+  V W AMI GY +    +EA
Sbjct: 404 IFNNL--------------------------------EKTNVTWNAMILGYAQNGCVKEA 431

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L LF  MQ+  I+ D FT+V ++TA A+       +W+     +  + N++FV  AL+DM
Sbjct: 432 LNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDM 491

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG ++ A+++F  M  +   TW AMI G   +G G ++LD+F++M + ++ P+++T+
Sbjct: 492 YAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITF 551

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           + V+SAC+H+G V+EG   F  M   + +EP   HY  MVDLLGRAG L++A   I+ MP
Sbjct: 552 LSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMP 611

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
           +KP   V GA+LGAC++H++ E+ E AA+++ +LDPD    +VLL NIYA+ + WD   +
Sbjct: 612 IKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAK 671

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R  + D+G+ KTPGCS +E+   +H F +G  +HP++K+IY  L+ +  ++K  GY+PD
Sbjct: 672 VRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPD 731

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
              +  DV E+ K++ +  HSE+LA+AFGL+++ PG T+ I KNLR+C DCH   K +S+
Sbjct: 732 PDSIH-DVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISL 790

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           V  RE+IVRD  RFHHFK+GSCSC DYW
Sbjct: 791 VTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 174/385 (45%), Gaps = 36/385 (9%)

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDE 199
           ++K GF +    Q  +IS +C  G    A  +F+ V  K DV+ ++ M  GY +     +
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVL-YHIMLKGYAKNSSLGD 128

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
               F  M    V         +L  C +  DL  G+  H  +       NL +  A+  
Sbjct: 129 ALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMS 188

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           +YA C                                Q+D A + F++M  +D V WT +
Sbjct: 189 LYAKCR-------------------------------QIDNAYKMFERMQHKDLVSWTTL 217

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           + GY +    + AL L  +MQ +  +PD  T+VSIL A A++ AL +G  +  Y  ++  
Sbjct: 218 VAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGF 277

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
           ++ + V NAL+DMY KCG    A+ VF+ M  K   +W  MI G A NG  +++   F +
Sbjct: 278 ESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLK 337

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           ML    +P  VT +GVL AC + G ++ G  +   +  +  ++ N +    ++ +  +  
Sbjct: 338 MLDEGEVPTRVTMMGVLLACANLGDLERGW-FVHKLLDKLKLDSNVSVMNSLISMYSKCK 396

Query: 500 HLNEALEVIKNMPMKPNSIVWGALL 524
            ++ A  +  N  ++  ++ W A++
Sbjct: 397 RVDIAASIFNN--LEKTNVTWNAMI 419



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 134/286 (46%), Gaps = 10/286 (3%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           P+ +T    L++    C ++  L++   +H    KL L +N +V N L++   S+   + 
Sbjct: 345 PTRVTMMGVLLA----CANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMY-SKCKRVD 399

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
            A  +F  + + +V  WN MI GY++    K  + ++  M    ++ D +T   ++    
Sbjct: 400 IAASIFNNLEKTNVT-WNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALA 458

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
                   K +H   ++   D++VFV  AL+  Y  CG +  AR +FD+  +  V+TWNA
Sbjct: 459 DFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNA 518

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-C 245
           M  GY       ET  LF EM++  V P  +T + V+SAC+    ++ G    + ++E  
Sbjct: 519 MIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDY 578

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
            + P +   +A+ D+    G++  A      +  K  IS    + G
Sbjct: 579 YLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLG 624


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/684 (38%), Positives = 387/684 (56%), Gaps = 42/684 (6%)

Query: 66  KYAC--KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           K+ C  KVF K+P   +  WN M+ GY +  +      ++  M + DV     ++  +L 
Sbjct: 106 KFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLS 161

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
           GF ++  VE  +++   +L      +    N L+S Y   G ++ AR +FD     ++V+
Sbjct: 162 GFAQNGFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVS 217

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL-----VLSACAKLKD------- 231
           WN +  GY R K+ D+ R LF  M  +  +  ++ I       +LS   +L +       
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV 277

Query: 232 ---------------LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
                          LD   R    + E     N +  NA+   Y    ++  A E+F  
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYVQSQQIEKARELFDQ 333

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           + +++  SW  +VTGY   G +D A+  FD+MP+RD + W AMI GY +  +  EAL LF
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLF 393

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            +M+      +   +   L++CA + ALELG+ +   + K   +     GNAL+ MY KC
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC 453

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G +E+A  VF ++  KD  +W  MI G A +G G ++L +F  M + +I PD+VT VGVL
Sbjct: 454 GSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVL 512

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+HTG+VD+G EYF  M   +GI  N  HY CM+DLLGRAG L+EAL ++K+MP  P+
Sbjct: 513 SACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPD 572

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           +  WGALLGA R+H D E+ E AA+++ E++PDN  +YVLL N+YAA  RW   RE+R  
Sbjct: 573 AATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSK 632

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + D+G+KK PG S +E+    H F  GD SHP+ + IY  L+E+  +LK  G++     V
Sbjct: 633 MRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLV 692

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             DV EE+KE  +  HSEKLA+AFG++S  PG  IR++KNLR+C DCH   K +S +  R
Sbjct: 693 LHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQR 752

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           ++IVRD  RFHHF  GSCSC DYW
Sbjct: 753 QIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 204/445 (45%), Gaps = 46/445 (10%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           S    NA+IS Y    + D AR +F+     D+++WN M SGY +       R LF +M 
Sbjct: 90  STVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP 149

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
            K V    V+   +LS  A+   ++  ++    + +  +V N I  N L   Y   G + 
Sbjct: 150 EKDV----VSWNAMLSGFAQNGFVEEARK----IFDQMLVKNEISWNGLLSAYVQNGRIE 201

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A  +F +  + +++SW  ++ GY+ + ++D AR  FD+MP RD + W  MI GY +   
Sbjct: 202 DARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGL 261

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGAL-ELGEWVKTYIDKNKVK-NDIFVG 386
             EA  LF E+   ++    F   ++++     G L E     +   +KN+V  N +  G
Sbjct: 262 LSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAG 317

Query: 387 -------------------------NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
                                    N ++  Y +CG++++A+ +F EM ++D  +W AMI
Sbjct: 318 YVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMI 377

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G A +G  +++L +F +M R   I +       LS+C     ++ G++    + ++ G 
Sbjct: 378 SGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRL-VKAGF 436

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAA 540
           +        ++ + G+ G + EA +V +++  K + + W  ++ G  R     E   +  
Sbjct: 437 QTGYIAGNALLAMYGKCGSIEEAFDVFEDITEK-DIVSWNTMIAGYARHGFGKEALALFE 495

Query: 541 KQILELDPDNEAVYVLLCNIYAACN 565
              + + PD+    V L  + +AC+
Sbjct: 496 SMKMTIKPDD----VTLVGVLSACS 516



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 153/324 (47%), Gaps = 21/324 (6%)

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           +++  N     Y   G+   AL +F  ++ +  +++ A+++GY++  + D AR+ F++MP
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           +RD + W  M+ GY++      A  LF +M   ++     +  ++L+  A  G +E    
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQNGFVEE--- 171

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
            +   D+  VKN+I   N L+  Y + G +E A+R+F   +  +  +W  ++ G      
Sbjct: 172 ARKIFDQMLVKNEI-SWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKR 230

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
            D +  +F +M     + D++++  +++     G++ E R  F ++ I+         + 
Sbjct: 231 LDDARSLFDRM----PVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA-----WT 281

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
            MV    + G L+EA  + + MP K N + W A++     +  ++  E A +   ++   
Sbjct: 282 AMVSGFVQNGMLDEATRIFEEMPEK-NEVSWNAMIAG---YVQSQQIEKARELFDQMPSR 337

Query: 550 NEAVYVLLCNIYAACNRWDNFREL 573
           N + +  +   YA C   D  + L
Sbjct: 338 NTSSWNTMVTGYAQCGNIDQAKIL 361



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 49/248 (19%)

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           I + D++ W   ++ Y+ +GQ + A   F+ M  R  V + AMI GYL  N+F  A  +F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            +M      PD                                  D+   N ++  Y K 
Sbjct: 115 EKM------PDR---------------------------------DLISWNVMLSGYVKN 135

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G++  A+ +F +M  KD  +W AM+ G A NG  +++  +F QML    + +E+++ G+L
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLL 191

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SA    G +++ R  F D  +   I      + C++    R   L++A  +   MP++ +
Sbjct: 192 SAYVQNGRIEDARRLF-DSKMDWEI----VSWNCLMGGYVRKKRLDDARSLFDRMPVR-D 245

Query: 517 SIVWGALL 524
            I W  ++
Sbjct: 246 KISWNIMI 253



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 8/187 (4%)

Query: 13  LTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           +   + L   + +C  +  L   KQ+H + +K G  T     N L+     + G ++ A 
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMY-GKCGSIEEAF 460

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
            VF  I    +  WNTMI GY+R    K  + ++  M K  ++PD+ T   +L   +   
Sbjct: 461 DVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTG 519

Query: 130 AVEFGKE-LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAM 187
            V+ G E  +     +G  ++      +I      G +D A  +   + +  D  TW A+
Sbjct: 520 LVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGAL 579

Query: 188 FSGYKRV 194
             G  R+
Sbjct: 580 L-GASRI 585



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 369 WVKTYIDKNK----VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           W +    KN     V +DI   N  I  Y + G  E A  VF  M R+   T+ AMI G 
Sbjct: 42  WTQKLESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGY 101

Query: 425 AINGHGDKSLDMFSQMLRASIIPDE--VTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
             N   D +  +F +M      PD   +++  +LS     G +   R  F  M      E
Sbjct: 102 LSNNKFDCARKVFEKM------PDRDLISWNVMLSGYVKNGNLSAARALFNQMP-----E 150

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            +   +  M+    + G + EA ++   M +K N I W  LL A
Sbjct: 151 KDVVSWNAMLSGFAQNGFVEEARKIFDQMLVK-NEISWNGLLSA 193


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/516 (45%), Positives = 345/516 (66%), Gaps = 32/516 (6%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC-- 264
           +ERK  LP   T   VL ACA + +L++GK  H  V +      + ++N L  MY  C  
Sbjct: 2   LERKK-LPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
           GE                             G ++ AR+ FD+M + D V W+AMI GY+
Sbjct: 61  GE-----------------------------GGIEFARKVFDEMYKSDSVSWSAMIGGYV 91

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
           RV R  +A+ LFREMQ   + PDE T+VS+L+AC  LGALELG+WV++Y++K +V+ ++ 
Sbjct: 92  RVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVE 151

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           + NALIDM+ KCGDV+KA  +FR M  ++  +WT++I GLA++G G +++ +F +M+R+ 
Sbjct: 152 LSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSG 211

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           + PD+V ++G+LSAC+H+G+VD+G+ YF  M     I P   HYGCMVD+L RAG + EA
Sbjct: 212 VTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEA 271

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
           L+ ++ MP+ PN +VW  L+ ACR H + ++ E   +Q++  +P +E+ YVLL NIYA  
Sbjct: 272 LKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKM 331

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
           + W+    +R+ +  +G+KK PG +MIE++  ++EFVAGDKSH Q+KEIY  +DEM  ++
Sbjct: 332 SDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEM 391

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           K  GYMP  +EV LD+ +EDKE  + +HSEKLA+AF L+++ PG  IRIVKNLR+C DCH
Sbjct: 392 KRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAFALLNTPPGTLIRIVKNLRVCDDCH 451

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             +K +S +Y+RE++VRD+ RFHHFK+G CSC+D+W
Sbjct: 452 SASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 173/338 (51%), Gaps = 45/338 (13%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC-- 163
           ML+    P+ +T+PF+LK       +  GK +H  V+KFGF   V VQN L+  YC C  
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 164 --GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221
             G ++ AR +FD  YK D V+W+AM  GY RV +  +   LF EM+ KGV P  +T+V 
Sbjct: 61  GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS 120

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           VLSAC  L  L++GK    YV++ ++  N+ L NAL DM+A CG++  A  +F +++ ++
Sbjct: 121 VLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERN 180

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           ++SWT+++ G    G                               R  EA+ +F EM  
Sbjct: 181 IVSWTSVIGGLAMHG-------------------------------RGVEAVAVFEEMVR 209

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKCG 397
           S + PD+   + +L+AC++ G ++ G   K Y D  +    I         ++DM C+ G
Sbjct: 210 SGVTPDDVVFIGLLSACSHSGLVDKG---KRYFDSMRKDFSIVPKIEHYGCMVDMLCRAG 266

Query: 398 DVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSL 434
            V++A +  +EM +  +   W  +I   A   HG+  L
Sbjct: 267 LVKEALKFVQEMPIDPNPVVWRTLIN--ACRAHGELKL 302



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 154/330 (46%), Gaps = 17/330 (5%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGD--MKYACKVFRKIP 76
           ++ C  +  L   K +H   +K G      VQN LV  +CC   G+  +++A KVF ++ 
Sbjct: 17  LKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVFDEMY 76

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           +     W+ MI GY R+    + + ++ +M    V PD  T   +L   T   A+E GK 
Sbjct: 77  KSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKW 136

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +  +V K     +V + NALI  +  CG+VD A  +F    + ++V+W ++  G     +
Sbjct: 137 VESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGR 196

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILEN 255
             E   +F EM R GV P  V  + +LSAC+    +D GKR    + K+  IVP +    
Sbjct: 197 GVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYG 256

Query: 256 ALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQ------M 308
            + DM    G +  AL+    +  + + + W  ++      G++ +  +   Q      M
Sbjct: 257 CMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPM 316

Query: 309 PERDYVLWT---AMIDGYLRVNRFREALTL 335
            E +YVL +   A +  + +  R REA+ +
Sbjct: 317 HESNYVLLSNIYAKMSDWEKKTRIREAMDM 346


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 256/706 (36%), Positives = 400/706 (56%), Gaps = 36/706 (5%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRK 74
             L+S   +  ++ + +Q+HS  IK G+ ++  V+  L+     CS   D+K A ++F  
Sbjct: 318 ASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCS---DIKTAHEMFLT 374

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
               +V LWN M+  + ++D+      I+  M    + P+ +T+P +L+  T   A++ G
Sbjct: 375 AQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLG 434

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           +++H  V+K GF  +V+V + LI  Y   G++D A  I     +DDVV+W A+ SGY + 
Sbjct: 435 EQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQH 494

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
             F E  K F EM  +G+   ++     +SACA ++ L+ G++ H          +L + 
Sbjct: 495 NLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIG 554

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           NAL  +YA CG                               ++  A   F+++  +D +
Sbjct: 555 NALVSLYARCG-------------------------------RIKEAYLEFEKIDAKDSI 583

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W  +I G+ +     +AL +F +M  + +    FT  S ++A AN+  ++ G+ +   I
Sbjct: 584 SWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMI 643

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K    +DI V NALI  Y KCG +E A+R F EM  K+  +W AMI G + +G+G++++
Sbjct: 644 IKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAV 703

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++F +M +   +P+ VT+VGVLSAC+H G+V +G  YF  M+ +HG+ P  AHY C+VDL
Sbjct: 704 NLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDL 763

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           + RAG L+ A + I+ MP++P++ +W  LL AC VH++ E+ E AA+ +LEL+P++ A Y
Sbjct: 764 ISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATY 823

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL N+YA   +WD   + RQM+ +RG+KK PG S IE+   VH F  GD+ HP   +IY
Sbjct: 824 VLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIY 883

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L E+      +GY  D   +  DV +E K+  VY HSEKLA+ FGL+S    V I ++
Sbjct: 884 EFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVM 943

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+C DCH   K VS + +R +IVRD  RFHHF+ G CSCKDYW
Sbjct: 944 KNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  225 bits (573), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 157/575 (27%), Positives = 271/575 (47%), Gaps = 47/575 (8%)

Query: 16  ETPLISPIETCESMHQL-----KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           E    S +  C S H++     +QIH++ I  GLL +P + N L+    ++ G +  A K
Sbjct: 111 EISFASVLRAC-SGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLY-AKNGLIISARK 168

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF  +       W  MI G+S+    +  + ++ +M  + + P  Y F  +L G T+   
Sbjct: 169 VFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKL 228

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
            + G++LH  V K+G     +V NAL++ Y        A  +F      D V++N++ SG
Sbjct: 229 FDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISG 288

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
             +    D   +LF +M+R  + P  VT+  +LSACA    L  G++ H YV +  I  +
Sbjct: 289 LAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSD 348

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           +I+E AL D+Y  C ++  A E+F   + ++V                            
Sbjct: 349 MIVEGALLDLYVNCSDIKTAHEMFLTAQTENV---------------------------- 380

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
              VLW  M+  + +++   E+  +FR+MQ   + P++FT  SIL  C ++GAL+LGE +
Sbjct: 381 ---VLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQI 437

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
            T + K   + +++V + LIDMY K G ++ A  + R +   D  +WTA+I G A +   
Sbjct: 438 HTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLF 497

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
            ++L  F +ML   I  D + +   +SAC     +++GR+  A   +  G   + +    
Sbjct: 498 AEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVS-GYSEDLSIGNA 556

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           +V L  R G + EA    + +  K +SI W  L+        +   E A K   +++   
Sbjct: 557 LVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLISG---FAQSGYCEDALKVFAQMNRAK 612

Query: 551 -EAVYVLLCNIYAACNRWDNFRELRQ---MILDRG 581
            EA +    +  +A     N ++ +Q   MI+ RG
Sbjct: 613 LEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRG 647



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 240/504 (47%), Gaps = 35/504 (6%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S+ + K++H + +KLG      + NKLV    +  GD+    KVF  +P  SV  W+ +I
Sbjct: 25  SLVECKKLHGKILKLGFGNESVLCNKLVDVYFA-LGDLDGVVKVFEDMPNRSVRSWDKII 83

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT-RDIAVEFGKELHCHVLKFGF 146
            G+         + ++  M++ +V P   +F  +L+  +   I + + +++H  ++  G 
Sbjct: 84  SGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGL 143

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
             S  + N LI  Y   G +  AR +FD     D V+W AM SG+ +    +E   LF E
Sbjct: 144 LCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCE 203

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M   G+ PT      VLS C K+K  DVG++ H  V +        + NAL  +Y+    
Sbjct: 204 MHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPN 263

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
              A ++F  +++KD +S+ ++++G   +G  D A + F +M +RDY             
Sbjct: 264 FVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM-KRDY------------- 309

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
                            ++PD  T+ S+L+ACA+ GAL  GE + +Y+ K  + +D+ V 
Sbjct: 310 -----------------LKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVE 352

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
            AL+D+Y  C D++ A  +F     ++   W  M+V      +  +S  +F QM    +I
Sbjct: 353 GALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLI 412

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P++ TY  +L  CT  G +D G E      I+ G + N      ++D+  + G L+ A  
Sbjct: 413 PNQFTYPSILRTCTSVGALDLG-EQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHV 471

Query: 507 VIKNMPMKPNSIVWGALLGACRVH 530
           +++ +  + + + W AL+     H
Sbjct: 472 ILRTLT-EDDVVSWTALISGYAQH 494



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 147/356 (41%), Gaps = 67/356 (18%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           ME +G+     T + +L  C     L   K+ H  + +       +L N L D+Y A G+
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +   +++F ++ N+ V SW  I++G++ +           +M  R               
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEK-----------KMSNR--------------- 94

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLG-ALELGEWVKTYIDKNKVKNDIFV 385
                 L LF  M   N+ P E +  S+L AC+     +   E +   I  + +     +
Sbjct: 95  -----VLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPII 149

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            N LI +Y K G +  A++VF  +  KD  +W AMI G + NG+ ++++ +F +M  A I
Sbjct: 150 SNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGI 209

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE----------------PN----- 484
            P    +  VLS CT   + D G +  A +  ++G                  PN     
Sbjct: 210 FPTPYVFSSVLSGCTKIKLFDVGEQLHA-LVFKYGSSLETYVCNALVTLYSRMPNFVSAE 268

Query: 485 ----------EAHYGCMVDLLGRAGHLNEALEVIKNMP---MKPNSIVWGALLGAC 527
                     E  +  ++  L + G  + ALE+   M    +KP+ +   +LL AC
Sbjct: 269 KVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSAC 324


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/592 (40%), Positives = 374/592 (63%), Gaps = 6/592 (1%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYC-LCGEVD-MARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H  +L  G D S +V   LI T   L   VD     IF+     +   +NA+  GY 
Sbjct: 63  KQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALIRGYL 122

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNL 251
             ++  E+ + +  M ++GV+P S T   +  AC    D+ +G++ H + +       +L
Sbjct: 123 IEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGEDL 182

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + N++ DMY  CG +    ++F  + N+DVISWT +++ Y+  G ++ A + FD +P +
Sbjct: 183 HVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVK 242

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D V WT M+ G+ +  + REA+  F +MQ   +  DE T++ +++ACA LGA +  +W++
Sbjct: 243 DMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIR 302

Query: 372 TYIDKNKV--KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
              +K++   K+ + VG+ALIDMY KCG V  A RVF+ M  ++ +++++MI+G A++G 
Sbjct: 303 DVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGR 362

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
              ++ +F +M++  I P+ VT++GVL+AC+H GMV++G + F  M   +GI+P+  HY 
Sbjct: 363 VHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYT 422

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           CMVDLLGRAG L EA E++K MP++P+  VWGALLGACR+H+  ++A +AA  + EL+P 
Sbjct: 423 CMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPY 482

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM-NGVVHEFVAGDKSHP 608
               Y+LL NIYA+C RW++   +R+++  RG++K P  S IE   G+VHEF +GD +HP
Sbjct: 483 CIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHP 542

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPG 668
           ++ EI   L+++   L+  GY P +S V  DV +EDK R +  HSEKLA+AFGLIS+ PG
Sbjct: 543 RSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTIPG 602

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             IRIVKNLR+C DCH +    S +  RE+IVRD  RFHHF  G CSC ++W
Sbjct: 603 SKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 207/458 (45%), Gaps = 78/458 (17%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRK 74
           E+ +++ ++ C+++ Q+KQ+H++ +  GL  +  V  KL+ T          Y   +F +
Sbjct: 46  ESQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQ 105

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           +  P+  L+N +I+GY   +  K     Y  M K  V P ++TF  L K     + V  G
Sbjct: 106 VNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLG 165

Query: 135 KELHCH-VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------VSYKD------- 179
           +++H   +L  GF   + V N++I  Y  CG ++  R +FD       +S+ +       
Sbjct: 166 RQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVK 225

Query: 180 -----------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
                            D+V W  M SG+ +  +  E    F +M+  GV    +T++ V
Sbjct: 226 SGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGV 285

Query: 223 LSACAKLKDL-------DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           +SACA+L          DV +++    K      ++++ +AL DMY+ CG +G A  +F 
Sbjct: 286 ISACAQLGAAKYADWIRDVAEKSEFGGKH-----SVVVGSALIDMYSKCGSVGDAYRVFQ 340

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
            +K ++V S+++++ G+   G+V                                +A+ L
Sbjct: 341 GMKERNVYSYSSMILGFAMHGRV-------------------------------HDAMKL 369

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFVGNALIDMYC 394
           F EM  + I+P+  T + +LTAC++ G +E G  +   ++K   +K        ++D+  
Sbjct: 370 FDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLG 429

Query: 395 KCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
           + G +++A  + + M +      W A++    I+   D
Sbjct: 430 RAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPD 467


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/514 (44%), Positives = 348/514 (67%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M  KGV P   T+  V+ ACA +  L+ GK+AH Y+ +     +++++ AL  MYA CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +  A  +F  +  +   +W A++TG+     +  A + F +M ERD V WTA+I GY + 
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
               E+L +F +M+ + ++ D F + S+L+ACA+L ALELG     Y+ ++    DI VG
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           +AL+DMY K G +E A +VF +M ++++ +W ++I G A +G G+ ++ +F QML+A I 
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P+E+++VGVLSAC+HTG+V+EGR YF  MT  +GI P+ +HY CM+DLLGRAG L+EA  
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
            I  MP++P+  VWGALLGACR+H + E+A+  A+ +L ++     +YVLL NIYAA  +
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           WD+  ++R+++ DRG+ K PG S IE+  ++H FVAG+ SHPQ KEI+  L+ ++  +K 
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKA 420

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            GY+P+ + V  DV +++KE ++  HSEKLA+AFG+I++ PG TIR+ KNLR+C DCH +
Sbjct: 421 AGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTV 480

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            K +S+ + R+++VRD  RFHHFK G CSC DYW
Sbjct: 481 IKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 163/357 (45%), Gaps = 64/357 (17%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           M+   V+P+ +T   ++K      ++E GK+ H +++K GF+S V VQ AL+  Y  CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV----- 220
           ++ A  +FD   +    TWNAM +G+ + +   +  KLF EM  + V+  +  I      
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 221 --------------------------LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
                                      VLSACA L  L++G++ H YV +     ++++ 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           +AL DMYA  G M  A ++F  +  ++ +SW +I+TG    G                  
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHG------------------ 222

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
                        R  +A+ LF +M  + I+P+E + V +L+AC++ G +  G      +
Sbjct: 223 -------------RGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLM 269

Query: 375 DKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
            +N  +  D+     +ID+  + G +++A+     M +  D   W A++    I+G+
Sbjct: 270 TQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGN 326



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 147/331 (44%), Gaps = 33/331 (9%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF---CCS------ 60
           P+  T  T ++    +  S+ Q KQ H+  IK+G  ++  VQ  LV     C S      
Sbjct: 8   PNQFTLST-VVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGH 66

Query: 61  ---------------------EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNG 99
                                +  DMK A K+F ++    V  W  +I GY++       
Sbjct: 67  VFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDES 126

Query: 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
           + ++  M K+ ++ D +    +L       A+E G++ H +V++ GF   + V +AL+  
Sbjct: 127 LNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDM 186

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
           Y   G ++ A  +FD   + + V+WN++ +G  +  + ++   LF +M + G+ P  ++ 
Sbjct: 187 YAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISF 246

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLILENALTDMYAACGEMGFALE-IFGNI 277
           V VLSAC+    ++ G+     + +   IVP++     + D+    G +  A   I G  
Sbjct: 247 VGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMP 306

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
              DV  W A++      G  ++A++  + +
Sbjct: 307 VEPDVSVWGALLGACRIHGNTELAKRIAEHL 337


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/684 (38%), Positives = 386/684 (56%), Gaps = 42/684 (6%)

Query: 66  KYAC--KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           K+ C  KVF K+P   +  WN M+ GY +  +      ++  M + DV     ++  +L 
Sbjct: 106 KFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLS 161

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
           GF ++  VE  +++   +L      +    N L+S Y   G ++ AR +FD     ++V+
Sbjct: 162 GFAQNGFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVS 217

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL-----VLSACAKLKD------- 231
           WN +  GY R K+ D+ R LF  M  +  +  ++ I       +LS   +L +       
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV 277

Query: 232 ---------------LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
                          LD   R    + E     N +  NA+   Y    ++  A E+F  
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYVQSQQIEKARELFDQ 333

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           + +++  SW  +VTGY   G +D A+  FD+MP+RD + W AMI GY +  +  EAL LF
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLF 393

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            +M+      +   +   L++CA + ALELG+ +   + K   +     GNAL+ MY KC
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC 453

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G +E+A  VF ++  KD  +W  MI G A +G G ++L +F  M + +I PD+VT VGVL
Sbjct: 454 GSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVL 512

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+HTG VD+G EYF  M   +GI  N  HY CM+DLLGRAG L+EAL ++K+MP  P+
Sbjct: 513 SACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPD 572

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           +  WGALLGA R+H D E+ E AA+++ E++PDN  +YVLL N+YAA  RW   RE+R  
Sbjct: 573 AATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSK 632

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + D+G+KK PG S +E+    H F  GD SHP+ + IY  L+E+  +LK  G++     V
Sbjct: 633 MRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLV 692

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             DV EE+KE  +  HSEKLA+AFG++S  PG  IR++KNLR+C DCH   K +S +  R
Sbjct: 693 LHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQR 752

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           ++IVRD  RFHHF  GSCSC DYW
Sbjct: 753 QIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 204/445 (45%), Gaps = 46/445 (10%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           S    NA+IS Y    + D AR +F+     D+++WN M SGY +       R LF +M 
Sbjct: 90  STVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP 149

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
            K V    V+   +LS  A+   ++  ++    + +  +V N I  N L   Y   G + 
Sbjct: 150 EKDV----VSWNAMLSGFAQNGFVEEARK----IFDQMLVKNEISWNGLLSAYVQNGRIE 201

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A  +F +  + +++SW  ++ GY+ + ++D AR  FD+MP RD + W  MI GY +   
Sbjct: 202 DARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGL 261

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGAL-ELGEWVKTYIDKNKVK-NDIFVG 386
             EA  LF E+   ++    F   ++++     G L E     +   +KN+V  N +  G
Sbjct: 262 LSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAG 317

Query: 387 -------------------------NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
                                    N ++  Y +CG++++A+ +F EM ++D  +W AMI
Sbjct: 318 YVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMI 377

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G A +G  +++L +F +M R   I +       LS+C     ++ G++    + ++ G 
Sbjct: 378 SGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRL-VKAGF 436

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAA 540
           +        ++ + G+ G + EA +V +++  K + + W  ++ G  R     E   +  
Sbjct: 437 QTGYIAGNALLAMYGKCGSIEEAFDVFEDITEK-DIVSWNTMIAGYARHGFGKEALALFE 495

Query: 541 KQILELDPDNEAVYVLLCNIYAACN 565
              + + PD+    V L  + +AC+
Sbjct: 496 SMKMTIKPDD----VTLVGVLSACS 516



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 153/324 (47%), Gaps = 21/324 (6%)

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           +++  N     Y   G+   AL +F  ++ +  +++ A+++GY++  + D AR+ F++MP
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           +RD + W  M+ GY++      A  LF +M   ++     +  ++L+  A  G +E    
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQNGFVEE--- 171

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
            +   D+  VKN+I   N L+  Y + G +E A+R+F   +  +  +W  ++ G      
Sbjct: 172 ARKIFDQMLVKNEI-SWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKR 230

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
            D +  +F +M     + D++++  +++     G++ E R  F ++ I+         + 
Sbjct: 231 LDDARSLFDRM----PVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA-----WT 281

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
            MV    + G L+EA  + + MP K N + W A++     +  ++  E A +   ++   
Sbjct: 282 AMVSGFVQNGMLDEATRIFEEMPEK-NEVSWNAMIAG---YVQSQQIEKARELFDQMPSR 337

Query: 550 NEAVYVLLCNIYAACNRWDNFREL 573
           N + +  +   YA C   D  + L
Sbjct: 338 NTSSWNTMVTGYAQCGNIDQAKIL 361



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 49/248 (19%)

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           I + D++ W   ++ Y+ +GQ + A   F+ M  R  V + AMI GYL  N+F  A  +F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            +M      PD                                  D+   N ++  Y K 
Sbjct: 115 EKM------PDR---------------------------------DLISWNVMLSGYVKN 135

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G++  A+ +F +M  KD  +W AM+ G A NG  +++  +F QML    + +E+++ G+L
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLL 191

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SA    G +++ R  F D  +   I      + C++    R   L++A  +   MP++ +
Sbjct: 192 SAYVQNGRIEDARRLF-DSKMDWEI----VSWNCLMGGYVRKKRLDDARSLFDRMPVR-D 245

Query: 517 SIVWGALL 524
            I W  ++
Sbjct: 246 KISWNIMI 253



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 8/187 (4%)

Query: 13  LTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           +   + L   + +C  +  L   KQ+H + +K G  T     N L+     + G ++ A 
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMY-GKCGSIEEAF 460

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
            VF  I    +  WNTMI GY+R    K  + ++  M K  ++PD+ T   +L   +   
Sbjct: 461 DVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTG 519

Query: 130 AVEFGKE-LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAM 187
            V+ G E  +     +G  ++      +I      G +D A  +   + +  D  TW A+
Sbjct: 520 FVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGAL 579

Query: 188 FSGYKRV 194
             G  R+
Sbjct: 580 L-GASRI 585



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 18/164 (10%)

Query: 369 WVKTYIDKNK----VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           W +    KN     V +DI   N  I  Y + G  E A  VF  M R+   T+ AMI G 
Sbjct: 42  WTQKLESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGY 101

Query: 425 AINGHGDKSLDMFSQMLRASIIPDE--VTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
             N   D +  +F +M      PD   +++  +LS     G +   R  F  M      E
Sbjct: 102 LSNNKFDCARKVFEKM------PDRDLISWNVMLSGYVKNGNLSAARALFNQMP-----E 150

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            +   +  M+    + G + EA ++   M +K N I W  LL A
Sbjct: 151 KDVVSWNAMLSGFAQNGFVEEARKIFDQMLVK-NEISWNGLLSA 193


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 278/780 (35%), Positives = 422/780 (54%), Gaps = 78/780 (10%)

Query: 14  TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
            +E    S  ++C      K++H+  +  G + +  +  +LV    S  GD+  +   F 
Sbjct: 74  NEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYAS-LGDVSLSRGTFD 132

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGV-LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           +I R  V  WN+MI  Y R    +  +   Y  +L +  + D YTFP +LK     +   
Sbjct: 133 QIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD-- 190

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G+++HC V K GF   VFV  +LI  Y   G V +AR +FD     D+ +WNAM SG  
Sbjct: 191 -GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLI 249

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +     +   +  EM  +G+   SVT+  +L  CA+L D+      H YV +  +   L 
Sbjct: 250 QNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELF 309

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM---- 308
           + NAL +MYA  G +G A ++F  +  +DV+SW +I+  Y        AR +F +M    
Sbjct: 310 VSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNG 369

Query: 309 ----------------PERDY--------------------VLWTAMIDGYLRVNRFREA 332
                             RDY                    V+  A++D Y ++     A
Sbjct: 370 LEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSA 429

Query: 333 LTLFREMQTSNI--------------------------------RPDEFTIVSILTACAN 360
             +F  +   ++                                + ++ T VSIL A A+
Sbjct: 430 HKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAH 489

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           +GAL+ G  +  ++ K  +  D+FVG  LID+Y KCG +  A  +F ++ R+    W A+
Sbjct: 490 VGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAI 549

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I    I+GHG+K+L +F +M    + PD VT++ +LSAC+H+G+VDEG+ +F  M  ++G
Sbjct: 550 ISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQ-EYG 608

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           I+P+  HYGCMVDLLGRAG L  A + IK+MP+ P++ +WGALLGACR+H + E+ + A+
Sbjct: 609 IKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFAS 668

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
            ++ E+D +N   YVLL NIYA   +W+   ++R +  +RG+KKTPG S IE+N  V  F
Sbjct: 669 DRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIF 728

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
             G++SHP+ KEIY +L  +T+ +K +GY+PD S V  DV E++KE  +  HSE+LA+AF
Sbjct: 729 YTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAF 788

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G+IS+ P   IRI KNLR+C DCH   K +S + +RE++VRD  RFHHFK+G CSC DYW
Sbjct: 789 GIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/597 (39%), Positives = 376/597 (62%), Gaps = 12/597 (2%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGE----------VDMARGIFDVSYKDDVVTW 184
           K +H  +L+    S VFV + L++   LC +          +  A GIF      ++  +
Sbjct: 29  KIIHGFLLRTHLISDVFVASRLLAL-ALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVF 87

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N +   +    +  +    + +M +  + P ++T   ++ A  +++ + VG++ H  +  
Sbjct: 88  NVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVR 147

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                ++ +EN+L  MYA CG +  A  IFG +  +DV+SWT++V GY   G V+ AR+ 
Sbjct: 148 FGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREM 207

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           FD+MP R+   W+ MI+GY + N F +A+ LF  M+   +  +E  +VS++++CA+LGAL
Sbjct: 208 FDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGAL 267

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           E GE    Y+ K+ +  ++ +G AL+DMY +CG++EKA RVF E+  KD  +W+++I GL
Sbjct: 268 EFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGL 327

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A++GH  K++  FSQM+R    P ++T   VLSAC+H G+VD+G E + +M   +GIEP 
Sbjct: 328 AVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPR 387

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGC+VD+LGRAG L EA   I  MP+KPN+ + GALLGAC+++++ E+AE     ++
Sbjct: 388 LEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLI 447

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG- 603
           E+ P++   YVLL NIYA   +W+    LR ++ ++ +KK PG S+IE++G +++F  G 
Sbjct: 448 EVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGD 507

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           D+ HP+  +I    +E+   ++ +GY  +  + F DV EE+KE A++ HSEKLA+A+G++
Sbjct: 508 DQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMM 567

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +  G TIRIVKNLR+C DCH   KL+S VY RE IVRD+ RFHHF++G CSC+DYW
Sbjct: 568 KTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 209/439 (47%), Gaps = 71/439 (16%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC-CSEKGD----- 64
           +TL  + P ++ +++C S   LK IH   ++  L+++  V ++L+    C +        
Sbjct: 7   NTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPT 66

Query: 65  --MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
             + YA  +F +I  P++ ++N +I+ +S           Y  MLKS + PDN TFPFL+
Sbjct: 67  NLLGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLI 126

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL-------------------------- 156
           K  T    V  G++ H  +++FGF + V+V+N+L                          
Sbjct: 127 KASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVV 186

Query: 157 -----ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
                ++ YC CG V+ AR +FD     ++ TW+ M +GY +   F++   LF  M+R+G
Sbjct: 187 SWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREG 246

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V+     +V V+S+CA L  L+ G+RAH YV +  +  NLIL  AL DMY  CGE+  A+
Sbjct: 247 VVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAI 306

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            +F  + +KD +SW++I+ G    G    A  YF QM    +                  
Sbjct: 307 RVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGF------------------ 348

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALI 390
                         P + T+ ++L+AC++ G ++ G  +   + ++  ++  +     ++
Sbjct: 349 -------------SPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIV 395

Query: 391 DMYCKCGDVEKAQRVFREM 409
           DM  + G + +A+    +M
Sbjct: 396 DMLGRAGKLAEAENFILKM 414


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 255/687 (37%), Positives = 385/687 (56%), Gaps = 32/687 (4%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           ++H   IKLG  ++P   N L+    ++ G  + A  VF +IP+P +  WN +I G    
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMY-AKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLH 267

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           + +   + +   M    V P  +T    LK       V+ G++LH  ++K   +   FV 
Sbjct: 268 EKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVG 327

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
             LI  Y  CG +  AR +FD+    DV+ WN++ SGY       E   LF  M ++G+ 
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLE 387

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
               T+  +L + A  +     ++ H    +     +  + N+L D Y  C  +      
Sbjct: 388 FNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLL------ 441

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                                    + A + F+  P  D V +T+MI  Y +     EAL
Sbjct: 442 -------------------------EDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEAL 476

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            ++  MQ  +I+PD F   S+  ACANL A E G+ +  ++ K  + +D+F GN+L++MY
Sbjct: 477 KMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMY 536

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KCG ++ A  +F E+  +   +W+AMI GLA +GHG K+L +F QML+  I+P+ +T V
Sbjct: 537 AKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLV 596

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            VLSAC H G+V E R +F  M    GI P + HY CMVD+LGR G L+EA+ ++K MP 
Sbjct: 597 SVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPF 656

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           + ++ VWGALLGA R+H++ E+   AA+ +L L+P+    ++LL NIYA+   WDN  ++
Sbjct: 657 QASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKV 716

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R+ + +  +KK PG S IE+   V+ F+ GD+SHP++KEIY+KLD++   L   GY+P I
Sbjct: 717 RRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMI 776

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
                DV + +KE+ ++ HSEKLA+AFGLI++ PG  IR+ KNLR+C+DCH   K +S V
Sbjct: 777 ETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKV 836

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
             RE+IVRD  RFHHF+ GSCSC DYW
Sbjct: 837 ASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 132/552 (23%), Positives = 245/552 (44%), Gaps = 83/552 (15%)

Query: 70  KVFRKI----PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG- 124
           +V RK+      P +  W+ +I GY +    +  +L Y +M     + + +TF  +LKG 
Sbjct: 99  RVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGC 158

Query: 125 -FTRDIAV--------------------------------------EFGKELHCHVLKFG 145
             TR++ +                                       +G ++H +++K G
Sbjct: 159 SLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLG 218

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           +DS  F  NAL+  Y   G  + A  +F    K D+V+WNA+ +G    ++ D   KL G
Sbjct: 219 YDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLG 278

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           +M    V P+  T+   L ACA +  + +G++ H  + +  + P+  +   L DMY+ CG
Sbjct: 279 KMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCG 338

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            +  A  +F  +  KDVI W +I++GY N G        +D                   
Sbjct: 339 LLQDARMVFDLMPXKDVIVWNSIISGYSNCG--------YDI------------------ 372

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
                EA++LF  M    +  ++ T+ +IL + A   A    E V T   K+  + D +V
Sbjct: 373 -----EAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYV 427

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            N+L+D Y KC  +E A +VF     +D   +T+MI   +  G G+++L M+ +M    I
Sbjct: 428 ANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDI 487

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
            PD   +  + +AC +    ++G++    + ++ G+  +      +V++  + G +++A 
Sbjct: 488 KPDAFIFSSLFNACANLSAYEQGKQIHVHV-LKCGLLSDVFAGNSLVNMYAKCGSIDDAS 546

Query: 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAA 563
            +   +  +   + W A++G    H     A     Q+L+  + P+    ++ L ++ +A
Sbjct: 547 CIFNEISWR-GIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPN----HITLVSVLSA 601

Query: 564 CNRWDNFRELRQ 575
           CN      E R+
Sbjct: 602 CNHAGLVTEARR 613



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 232/509 (45%), Gaps = 48/509 (9%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           +P LL  FT    V  G  +H  +++      + ++N L++ Y  C    +AR +   S 
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIR---LGLLGLRNRLVNLYSKCQCFRVARKLVIDSS 109

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           + D+V+W+A+ SGY +  + +E    + EM   G      T   VL  C+  ++L++GK+
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 238 AHRYVKECKIVPNLILEN--ALTDMYAACGEM---GFALEIFGNI----KNKDVISWTAI 288
            HR     +++   I  N  +L+ +  AC  +    + +++ G +     + D  S  A+
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           +  Y   G  + A   F ++P+ D V W A+I G +   +   AL L  +M +  + P  
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
           FT+ S L ACA +G ++LG  + + + K  ++ D FVG  LIDMY KCG ++ A+ VF  
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDL 349

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT-------- 460
           M  KD   W ++I G +  G+  +++ +F+ M +  +  ++ T   +L +          
Sbjct: 350 MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFC 409

Query: 461 ---HTGMVDEGREY-----------------FADMTIQHGIEPNE--AHYGCMVDLLGRA 498
              HT  +  G +Y                   D      + P E    Y  M+    + 
Sbjct: 410 EQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQY 469

Query: 499 GHLNEALEV---IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAV 553
           G   EAL++   +++  +KP++ ++ +L  AC      E  +     +L+  L  D  A 
Sbjct: 470 GLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAG 529

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGI 582
             L+ N+YA C   D+   +   I  RGI
Sbjct: 530 NSLV-NMYAKCGSIDDASCIFNEISWRGI 557



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 214/463 (46%), Gaps = 44/463 (9%)

Query: 10  PSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           PS  T    L S ++ C ++  +K   Q+HS  +K+ +  +  V   L+    S+ G ++
Sbjct: 287 PSMFT----LSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMY-SKCGLLQ 341

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
            A  VF  +P   V +WN++I GYS        + ++ +M K  +  +  T   +LK   
Sbjct: 342 DARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTA 401

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
              A  F +++H   +K G+    +V N+L+ +Y  C  ++ A  +F+V   +D+V + +
Sbjct: 402 GSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTS 461

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M + Y +    +E  K++  M+ + + P +     + +ACA L   + GK+ H +V +C 
Sbjct: 462 MITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCG 521

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
           ++ ++   N+L +MYA CG +  A  IF  I  + ++SW+A++ G    G          
Sbjct: 522 LLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGH--------- 572

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
                                  R+AL LF +M  + I P+  T+VS+L+AC + G +  
Sbjct: 573 ----------------------GRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTE 610

Query: 367 GEWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGL 424
                  ++K   +         ++D+  + G +++A  + +EM  +     W A++   
Sbjct: 611 ARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAA 670

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVD 466
            I  H +  L   +  +  ++ P++  T++ + +    TGM D
Sbjct: 671 RI--HKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWD 711


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/721 (36%), Positives = 387/721 (53%), Gaps = 55/721 (7%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT--FCCS 60
           S   ISPPS  +                 L+ +H+  +  G   +  V + L    F  S
Sbjct: 128 SRGGISPPSAASA---------------ALRPLHALAVASGFAADNFVASALAKLYFTLS 172

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
              D +   KVF  +P P   LWNT++ G S  ++ +  V +        VRPD+ T   
Sbjct: 173 RGNDAR---KVFDAVPSPDTVLWNTLLAGLSGSEALEAFVRM---AGAGSVRPDSTTLAS 226

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +L           G+ +H    K G      V   LIS Y  CG+++ AR +FD     D
Sbjct: 227 VLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPD 286

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           +VT+NA+ SGY        + +LF E+   G+ P+S T+V ++   +      +    H 
Sbjct: 287 LVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHA 346

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           +V +  +  N  +  ALT +Y    +M                               D 
Sbjct: 347 HVVKAGLDANAPVSTALTTLYCRFNDM-------------------------------DS 375

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           AR+ FD MPE+    W AMI GY +      A+ LF++MQ  N+RP+  TI S L+ACA 
Sbjct: 376 ARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQ 435

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           LGAL LG+WV   I   K++ +++V  ALIDMY KCG + +A+ +F  M  K+  +W  M
Sbjct: 436 LGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVM 495

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I G  ++G G ++L ++  M+ A + P   T++ VL AC+H G+V EG   F  MT  +G
Sbjct: 496 ISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYG 555

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRVHRDAEMAEMA 539
           I P   H  CMVDLLGRAG L EA E+I   P       +WGALLGAC VH+D ++A++A
Sbjct: 556 ITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLA 615

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
           ++++ EL+P+N   YVLL N+Y +  ++     +RQ    R + KTPGC++IE+    H 
Sbjct: 616 SQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHV 675

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA 659
           F+AGD++HPQ+  IYL L+++T+ +   GY PD      DV EE+KE  V  HSEKLA+A
Sbjct: 676 FMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIA 735

Query: 660 FGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
           FGL+++ PG  IRI+KNLR+C+DCH   K++S V  R ++VRD +RFHHF+ G CSC DY
Sbjct: 736 FGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDY 795

Query: 720 W 720
           W
Sbjct: 796 W 796


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/597 (40%), Positives = 363/597 (60%), Gaps = 40/597 (6%)

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           T+PF++K         FG  +H HV+K GF+   ++ N+LI  Y    ++  A+ +F + 
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
              DVV+WNAM  GY +  +   TR +F  M                             
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM----------------------------- 92

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
                     +  ++I  N + + YA  G++  A  +F  +  ++++SW ++++G++  G
Sbjct: 93  ----------VCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCG 142

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
            V+ A   F +MP RD V W +M+  Y +  +  EAL LF +M+   ++P E T+VS+L+
Sbjct: 143 NVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLS 202

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           ACA+LGAL+ G  + TYI+ N+++ +  VG AL+DMY KCG +  A +VF  M  KD   
Sbjct: 203 ACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLA 262

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W  +I G+AI+GH  ++  +F +M  AS+ P+++T+V +LSAC+H GMVDEG++    M+
Sbjct: 263 WNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMS 322

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
             +GIEP   HY C++DLL RAG L EA+E+I  MPM+PN    GALLG CR+H + E+ 
Sbjct: 323 SSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELG 382

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           EM  K+++ L P +   Y+LL NIYAA  +WD+ R++R ++   GI K PG S+IE+ G+
Sbjct: 383 EMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGM 442

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLK-FVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
           VH FVAGD SHP++ +IY KL+E+ + LK  +GY  D   V LD+ EEDKE A+  HSEK
Sbjct: 443 VHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEK 502

Query: 656 LAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHG 712
           LA+A+GL+       IRIVKNLR+C DCH + KL+S VY RE+IVRD+ RFHHF+ G
Sbjct: 503 LAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 196/405 (48%), Gaps = 58/405 (14%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           +H+  +K G   +  + N L+    + K D+  A ++F       V  WN MI GY +  
Sbjct: 22  VHTHVVKSGFECDSYIVNSLIHLYANGK-DLGAAKQLFSLCSDRDVVSWNAMIDGYVKRG 80

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS----SV 150
              +  +++  M+  DV     ++  ++ G+     ++  K L        FD     ++
Sbjct: 81  EMGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDEAKRL--------FDEMPERNL 128

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
              N+++S +  CG V+ A G+F      DVV+WN+M + Y +  + +E   LF +M   
Sbjct: 129 VSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 188

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           GV PT  T+V +LSACA L  LD G   H Y+ + +I  N I+  AL DMYA CG++  A
Sbjct: 189 GVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 248

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            ++F  +++KDV++W  I+ G    G V  A+Q                           
Sbjct: 249 TQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQ--------------------------- 281

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-----KTYIDKNKVKNDIFV 385
               LF+EM+ +++ P++ T V++L+AC++ G ++ G+ +      +Y  + KV++    
Sbjct: 282 ----LFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY--- 334

Query: 386 GNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
            + +ID+  + G +E+A  +   M +  +     A++ G  I+G+
Sbjct: 335 -DCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGN 378


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/591 (38%), Positives = 368/591 (62%), Gaps = 6/591 (1%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGE----VDMARGIFDVSYKDDVVTWNAMFSG 190
           K++H  +LK G     +     +S +C+       +  A+ +FD   + D   WN M  G
Sbjct: 31  KQIHARMLKTGLMQDSYAITKFLS-FCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG 89

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           +    + + +  L+  M        + T   +L AC+ L   +   + H  + +     +
Sbjct: 90  FSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEND 149

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           +   N+L + YA  G    A  +F  I   D +SW +++ GY+  G++D+A   F +M E
Sbjct: 150 VYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAE 209

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           ++ + WT MI GY++ +  +EAL LF EMQ S++ PD  ++ + L+ACA LGALE G+W+
Sbjct: 210 KNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWI 269

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
            +Y++K +++ D  +G  LIDMY KCG++E+A  VF+ + +K    WTA+I G A +GHG
Sbjct: 270 HSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHG 329

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
            +++  F +M +  I P+ +T+  VL+AC++TG+V+EG+  F  M   + ++P   HYGC
Sbjct: 330 REAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGC 389

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           +VDLLGRAG L+EA   I+ MP+KPN+++WGALL ACR+H++ E+ E   + ++ +DP +
Sbjct: 390 IVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYH 449

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              YV   NI+A   +WD   E R+++ ++G+ K PGCS I + G  HEF+AGD+SHP+ 
Sbjct: 450 GGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEI 509

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLD-VGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
           ++I  K   M   L+  GY+P++ E+ LD V ++++E  V+QHSEKLA+ +GLI + PG 
Sbjct: 510 EKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGT 569

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            IRI+KNLR+C DCH++ KL+S +Y R++++RD+TRFHHF+ G CSC DYW
Sbjct: 570 IIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 219/443 (49%), Gaps = 66/443 (14%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD--MKYACKVFRKIPR 77
           +S ++ C    +LKQIH++ +K GL+ +     K ++FC S      + YA  VF    R
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
           P   LWN MI+G+S  D  +  +L+Y  ML S    + YTFP LLK  +   A E   ++
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H  + K G+++ V+  N+LI++Y + G   +A  +FD   + D V+WN++  GY +  + 
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197

Query: 198 D-------------------------------ETRKLFGEMERKGVLPTSVTIVLVLSAC 226
           D                               E  +LF EM+   V P +V++   LSAC
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSAC 257

Query: 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWT 286
           A+L  L+ GK  H Y+ + +I  + +L   L DMYA CGEM  ALE+F NIK K V +WT
Sbjct: 258 AQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWT 317

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
           A+++GY   G                                 REA++ F EMQ   I+P
Sbjct: 318 ALISGYAYHGH-------------------------------GREAISKFMEMQKMGIKP 346

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           +  T  ++LTAC+  G +E G+ +   ++++  +K  I     ++D+  + G +++A+R 
Sbjct: 347 NVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRF 406

Query: 406 FREM-LRKDKFTWTAMIVGLAIN 427
            +EM L+ +   W A++    I+
Sbjct: 407 IQEMPLKPNAVIWGALLKACRIH 429



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 106/259 (40%), Gaps = 30/259 (11%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCS------ 60
           S P        L+       +  +  QIH+Q  KLG   +    N L+ ++  +      
Sbjct: 110 SAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLA 169

Query: 61  -----------------------EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHK 97
                                  + G M  A  +FRK+   +   W TMI GY + D +K
Sbjct: 170 HLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNK 229

Query: 98  NGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALI 157
             + ++ +M  SDV PDN +    L    +  A+E GK +H ++ K        +   LI
Sbjct: 230 EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLI 289

Query: 158 STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
             Y  CGE++ A  +F    K  V  W A+ SGY       E    F EM++ G+ P  +
Sbjct: 290 DMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVI 349

Query: 218 TIVLVLSACAKLKDLDVGK 236
           T   VL+AC+    ++ GK
Sbjct: 350 TFTAVLTACSYTGLVEEGK 368


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/543 (43%), Positives = 348/543 (64%), Gaps = 33/543 (6%)

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRA 238
           +V  WN +  GY  +        L+ EM   G++ P + T   ++ A   + D+ +G+  
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H  V        + ++N+L  +YA CG++  A ++                         
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKV------------------------- 178

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                 FD+MPE+D V W ++I+G+    +  EAL L+ EM +  I+PD FTIVS+L+AC
Sbjct: 179 ------FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A +GAL LG+ V  Y+ K  +  ++   N L+D+Y +CG VE+A+ +F EM+ K+  +WT
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRA-SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           ++IVGLA+NG G +++++F  M     ++P E+T+VG+L AC+H GMV EG EYF  M  
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
           ++ IEP   H+GCMVDLL RAG + +A E IK+MPM+PN ++W  LLGAC VH D+++AE
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE 412

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
            A  QIL+L+P++   YVLL N+YA+  RW + +++R+ +L  G+KK PG S++E+   V
Sbjct: 413 FARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRV 472

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLA 657
           HEF+ GDKSHPQ+  IY KL EMT  L+  GY+P IS V++DV EE+KE AV  HSEK+A
Sbjct: 473 HEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIA 532

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           +AF LIS+     I +VKNLR+C DCH   KLVS VY+RE++VRD++RFHHFK+GSCSC+
Sbjct: 533 IAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQ 592

Query: 718 DYW 720
           DYW
Sbjct: 593 DYW 595



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 140/457 (30%), Positives = 239/457 (52%), Gaps = 53/457 (11%)

Query: 11  STLTQETPLISP-IETC---------ESMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCC 59
           S  ++ + L+ P +E C          S+ +L+QIH+ +I+ G+ +++  +   L+ +  
Sbjct: 2   SPFSETSVLLLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLV 61

Query: 60  S--EKGDMKYACKVFRKIPRP-SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDN 115
           S      M YA KVF KI +P +V +WNT+I+GY+ I +  +   +Y +M  S  V PD 
Sbjct: 62  SLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDT 121

Query: 116 YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV 175
           +T+PFL+K  T    V  G+ +H  V++ GF S ++VQN+L+  Y  CG+V  A  +FD 
Sbjct: 122 HTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDK 181

Query: 176 SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
             + D+V WN++ +G+    + +E   L+ EM  KG+ P   TIV +LSACAK+  L +G
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           KR H Y+ +  +  NL   N L D+YA CG +  A  +F  + +K+ +SWT+++ G    
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG---- 297

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFREMQ-TSNIRPDEFTIVS 353
                                       L VN F +EA+ LF+ M+ T  + P E T V 
Sbjct: 298 ----------------------------LAVNGFGKEAIELFKYMESTEGLLPCEITFVG 329

Query: 354 ILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LR 411
           IL AC++ G ++ G E+ +   ++ K++  I     ++D+  + G V+KA    + M ++
Sbjct: 330 ILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ 389

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
            +   W  ++    +  HGD  L  F+++    + P+
Sbjct: 390 PNVVIWRTLLGACTV--HGDSDLAEFARIQILQLEPN 424



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 14/350 (4%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           S +  P T T    LI  + T   +   + IHS  I+ G  +   VQN L+    +  GD
Sbjct: 114 SGLVEPDTHTYPF-LIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLY-ANCGD 171

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           +  A KVF K+P   +  WN++I G++     +  + +Y +M    ++PD +T   LL  
Sbjct: 172 VASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSA 231

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
             +  A+  GK +H +++K G   ++   N L+  Y  CG V+ A+ +FD     + V+W
Sbjct: 232 CAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSW 291

Query: 185 NAMFSGYKRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
            ++  G        E  +LF  ME  +G+LP  +T V +L AC+    +  G    R ++
Sbjct: 292 TSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMR 351

Query: 244 -ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMA 301
            E KI P +     + D+ A  G++  A E   ++    +V+ W  ++      G  D+A
Sbjct: 352 EEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 411

Query: 302 R----QYFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                Q     P    DYVL + M   Y    R+ +   + ++M    ++
Sbjct: 412 EFARIQILQLEPNHSGDYVLLSNM---YASEQRWSDVQKIRKQMLRDGVK 458


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 224/471 (47%), Positives = 324/471 (68%)

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ L N +   Y A GE+  A ++F  +  +D++SW  ++ GY  RG V MAR+ FD   
Sbjct: 115 DVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTR 174

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           +RD   W++MI  Y +    +EAL L+REM+ + + PD  ++VS+L+AC+ +GAL +G  
Sbjct: 175 DRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAE 234

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           V  +++ N+V+ D+ +G AL+DMY KCGD+E + +VF  M  KD  TW++MI+GLA +G 
Sbjct: 235 VHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGL 294

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
           G  +L +FS+M+   + P+E+T++GVL ACTH G+V++G++YF+ M+  HG+ P   HYG
Sbjct: 295 GHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYG 354

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           CMVDLLGRAGH+ EA+E+I++M  KP+ I+W  LLGACR+H++ E+AE A  ++  LDP 
Sbjct: 355 CMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPL 414

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
            +  YVLL NIYA  N W+   E+R+ I    I++ PG S IE    VHEFV+GD+SHP+
Sbjct: 415 ADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPR 474

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
            +EIY  L+EM   L+  GY P  S V  D+ E+ K+RA+ +HSEKLA+AFGL+ +    
Sbjct: 475 IEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARS 534

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           T+RI KNLR C DCH   KL+S+ YDR++IVRD+ RFHHF  G CSCKDYW
Sbjct: 535 TLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 139/270 (51%), Gaps = 33/270 (12%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N +I  Y + G+V MAR IFD +   D  +W++M S Y + +   E  +L+ EM   GV 
Sbjct: 151 NTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVA 210

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  +++V VLSAC+ +  L +G   HR+V+  ++  ++ L  AL DMYA CG++  +L++
Sbjct: 211 PDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKV 270

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  KDV++W++++ G  N G                         G+       +AL
Sbjct: 271 FHAMPVKDVLTWSSMIIGLANHGL------------------------GH-------DAL 299

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDM 392
           +LF EM +  ++P+E T + +L AC ++G +  G ++  +  D + V   +     ++D+
Sbjct: 300 SLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDL 359

Query: 393 YCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
             + G VE+A  + R M  + D   W  ++
Sbjct: 360 LGRAGHVEEAMELIRSMTFKPDPIIWRTLL 389



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 130/292 (44%), Gaps = 11/292 (3%)

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
           +GD+  A ++F          W++MI  Y++    K  + ++ +M  + V PD  +   +
Sbjct: 160 RGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSV 219

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L   +   A+  G E+H  V     +  + +  AL+  Y  CG+++ +  +F      DV
Sbjct: 220 LSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDV 279

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           +TW++M  G        +   LF EM  +G+ P  +T + VL AC  +  ++ GK+    
Sbjct: 280 LTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSS 339

Query: 242 VKECK-IVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVD 299
           + +   +VP +     + D+    G +  A+E+  ++  K D I W  ++        V+
Sbjct: 340 MSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVE 399

Query: 300 MARQ------YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           +A +        D + +  YVL + +   Y + N +     + + ++  NI+
Sbjct: 400 IAEEAMAKLKVLDPLADGHYVLLSNI---YAQANSWEGVAEMRKTIRRENIQ 448


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 222/544 (40%), Positives = 356/544 (65%), Gaps = 1/544 (0%)

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           K +V +WN++ +   R     E  + F  M +  + P   T    + +C+ L DL  G++
Sbjct: 38  KTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQ 97

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
           AH+        P+L + +AL DMY+ CGE+  A  +F  I +++++SWT+++TGY+    
Sbjct: 98  AHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDD 157

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILT 356
              A + FD M ERD + W ++I  Y +     E++ +F  M +   I  +  T+ ++L 
Sbjct: 158 AHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLL 217

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           ACA+ G+  LG+ +   + K  +++++FVG ++IDMYCKCG VE A++ F  M  K+  +
Sbjct: 218 ACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKS 277

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W+AM+ G  ++GH  ++L++F +M  A + P+ +T+V VL+AC+H G+++EG  +F  M+
Sbjct: 278 WSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMS 337

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
            +  +EP   HYGCMVDLLGRAG+L EA ++IK M ++P+ +VWGALLGACR+H++ ++ 
Sbjct: 338 HEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLG 397

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           E++A+++ ELDP N   YVLL NIYA   RW++   +R ++ + G+ K PG S++++ G 
Sbjct: 398 EISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGR 457

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKL 656
           VH F+ GD+ HPQ ++IY  L++++  L+ VGY+PD++ V  DVG E+KE  +  HSEKL
Sbjct: 458 VHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKL 517

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           A+AFG++++ PG TI I+KNLR+C DCH   K +S + DRE++VRD  RFHHF+ G CSC
Sbjct: 518 AVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSC 577

Query: 717 KDYW 720
            DYW
Sbjct: 578 GDYW 581



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 175/383 (45%), Gaps = 65/383 (16%)

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           + + + +V  WN++I   +R       +  +  M K  ++P+  TFP  +K  +  + + 
Sbjct: 34  KYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLH 93

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY- 191
            G++ H   L FGF+  +FV +AL+  Y  CGE+  AR +FD     ++V+W +M +GY 
Sbjct: 94  SGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYV 153

Query: 192 ------KRVKQFD------------------------ETRKLFGEMERKGVLP-TSVTIV 220
                 + ++ FD                        E+ ++F  M + G +   +VT+ 
Sbjct: 154 QNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLS 213

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            VL ACA      +GK  H  V +  +  N+ +  ++ DMY  CG++  A + F  ++ K
Sbjct: 214 AVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREK 273

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +V SW+A+V GY   G                                 +EAL +F EM 
Sbjct: 274 NVKSWSAMVAGYGMHGHA-------------------------------KEALEVFYEMN 302

Query: 341 TSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
            + ++P+  T VS+L AC++ G LE G  W K    +  V+  +     ++D+  + G +
Sbjct: 303 MAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYL 362

Query: 400 EKAQRVFREM-LRKDKFTWTAMI 421
           ++A  + + M LR D   W A++
Sbjct: 363 KEAFDLIKGMKLRPDFVVWGALL 385



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 171/394 (43%), Gaps = 48/394 (12%)

Query: 5   SSISPPSTLTQETPLISPIETCESM---HQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           SS+   S     +     I++C ++   H  +Q H Q +  G   +  V + LV    S+
Sbjct: 65  SSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMY-SK 123

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN------ 115
            G+++ A  +F +I   ++  W +MI GY + D     + ++  M + DV   N      
Sbjct: 124 CGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVY 183

Query: 116 --------------------------YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
                                      T   +L       +   GK +H  V+K G +S+
Sbjct: 184 AQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESN 243

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           VFV  ++I  YC CG+V+MAR  FD   + +V +W+AM +GY       E  ++F EM  
Sbjct: 244 VFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNM 303

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMG 268
            GV P  +T V VL+AC+    L+ G    + +  E  + P +     + D+    G + 
Sbjct: 304 AGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLK 363

Query: 269 FALEIFGNIKNK-DVISWTAIVTGYINRGQVDM----ARQYFDQMPER--DYVLWTAMID 321
            A ++   +K + D + W A++        VD+    AR+ F+  P+    YVL + +  
Sbjct: 364 EAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNI-- 421

Query: 322 GYLRVNRFREALTLFREMQTSN-IRPDEFTIVSI 354
            Y    R+ +   +   M+ S  ++P  F++V I
Sbjct: 422 -YADAGRWEDVERMRILMKNSGLVKPPGFSLVDI 454


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/660 (38%), Positives = 390/660 (59%), Gaps = 43/660 (6%)

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           + + + SV  WN++I  ++R       +  +  M K  + P+  TFP  +K  +    + 
Sbjct: 44  KYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLC 103

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            GK++H     FG+ S +FV +ALI  Y  CG ++ AR +FD   + +VV+W +M SGY 
Sbjct: 104 AGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYV 163

Query: 193 RVKQFDETRKLF-----------GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           + ++  E   LF            E+   GV   SV +  V+SACA++    V +  H  
Sbjct: 164 QNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGL 223

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
             +      L + N L D YA CGE                               + ++
Sbjct: 224 AVKKGFEGCLAVGNTLMDAYAKCGE-------------------------------ISVS 252

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACAN 360
           R+ FD M E D   W ++I  Y +     EA +LF +M +   +R +  T+ ++L ACA+
Sbjct: 253 RKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAH 312

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
            GAL++G+ +   + K ++++++ VG +++DMYCKCG VE A++ F  + RK+  +WT M
Sbjct: 313 SGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVM 372

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           + G  ++GHG +++ +F +M+R  I P+ +T+V VL+AC+H G++ EG  +F  M  +  
Sbjct: 373 VAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFD 432

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           +EP   HY CMVDLLGRAG+L EA  +I+ M +KP+ IVWG+LLGACR+H++ E+ E++A
Sbjct: 433 VEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISA 492

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
           +++ +LDP N   YVLL NIYA   RWD+   +R ++ + G+ KTPG S++E  G VH F
Sbjct: 493 RKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVF 552

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
           + GDK HPQ ++IY  LDE+   L+ VGYMP+++ V  DV  E+K   +  HSEKLA+AF
Sbjct: 553 LVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAF 612

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G+++S PG  I+I+KNLR+C DCH   KL+S + +RE+++RD  RFHHFK G CSC DYW
Sbjct: 613 GIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/477 (26%), Positives = 221/477 (46%), Gaps = 57/477 (11%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTF 57
           +++ SS+   S     +     I++C S++ L   KQIH Q    G  ++  V + L+  
Sbjct: 71  LYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDM 130

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD------- 110
             S+ G +  A K+F +IP  +V  W +MI GY + +  +  V ++ + L  D       
Sbjct: 131 Y-SKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEI 189

Query: 111 ----VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166
               V  D+     ++    R       + +H   +K GF+  + V N L+  Y  CGE+
Sbjct: 190 VGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEI 249

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSA 225
            ++R +FD   + DV +WN++ + Y +     E   LF +M ++G V   +VT+  VL A
Sbjct: 250 SVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLA 309

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           CA    L +GK  H  V + ++  NL++  ++ DMY  CG                    
Sbjct: 310 CAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCG-------------------- 349

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                      +V+MAR+ FD++  ++   WT M+ GY      +EA+ +F EM    I+
Sbjct: 350 -----------RVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIK 398

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKCGDVEK 401
           P+  T VS+L AC++ G L+ G W   + +K K + D+  G    + ++D+  + G +++
Sbjct: 399 PNYITFVSVLAACSHAGLLKEG-W--HWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKE 455

Query: 402 AQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
           A  + +EM ++ D   W +++    I  H +  L   S      + P    Y  +LS
Sbjct: 456 AYGLIQEMKVKPDFIVWGSLLGACRI--HKNVELGEISARKLFKLDPSNCGYYVLLS 510


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  494 bits (1271), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/688 (36%), Positives = 396/688 (57%), Gaps = 33/688 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K+IH   +K G   +      L       +  +  A KVF ++P   +  WNT++ GYS+
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCR-QVNEARKVFDRMPERDLVSWNTIVAGYSQ 213

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               +  + +   M + +++P   T   +L   +    +  GKE+H + ++ GFDS V +
Sbjct: 214 NGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNI 273

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             AL+  Y  CG ++ AR +FD   + +VV+WN+M   Y + +   E   +F +M  +GV
Sbjct: 274 STALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGV 333

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            PT V+++  L ACA L DL+ G+  H+   E  +  N+ + N+L  MY  C E      
Sbjct: 334 KPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKE------ 387

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
                                    VD A   F ++  R  V W AMI G+ +  R  +A
Sbjct: 388 -------------------------VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDA 422

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L  F +M++  ++PD FT VS++TA A L      +W+   + ++ +  ++FV  AL+DM
Sbjct: 423 LNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDM 482

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG +  A+ +F  M  +   TW AMI G   +G G  +L++F +M + +I P+ VT+
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTF 542

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           + V+SAC+H+G+V+ G + F  M   + IE +  HYG MVDLLGRAG LNEA + I  MP
Sbjct: 543 LSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMP 602

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
           +KP   V+GA+LGAC++H++   AE AA+++ EL+PD+   +VLL NIY A + W+   +
Sbjct: 603 VKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQ 662

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R  +L +G++KTPGCSM+E+   VH F +G  +HP +K+IY  L+++   +K  GY+PD
Sbjct: 663 VRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPD 722

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            + + L V  + KE+ +  HSEKLA++FGL+++  G TI + KNLR+C DCH   K +S+
Sbjct: 723 -TNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISL 781

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           V  RE++VRD  RFHHFK+G+CSC DYW
Sbjct: 782 VTGREIVVRDMQRFHHFKNGACSCGDYW 809


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/698 (39%), Positives = 395/698 (56%), Gaps = 44/698 (6%)

Query: 52  NKLVTFCCSEKGDMKY-ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD 110
           N +++ C S   D  Y A ++F K+P   +  WN MI G  R  + +   L++  M + D
Sbjct: 84  NAMISGCLSN--DKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERD 141

Query: 111 VRPDNYTFPFLLKGFTRDIAVEFGKELH----C-HVLKFGFDSSVFVQNA---------- 155
           V     ++  +L G+ ++  V+  KE+     C + + +    + +VQN           
Sbjct: 142 V----VSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFE 197

Query: 156 ------LISTYCLCGE-------VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
                 LIS  C+ G        VD ARGIFD   + D V+WN M SGY +  +  E ++
Sbjct: 198 SKADWELISWNCMMGGYVKRNRLVD-ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQR 256

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           LF E   + V     T   ++S   +   LD  +R    + E     N +  NA+   Y 
Sbjct: 257 LFEESPVRDVF----TWTAMVSGYVQNGMLDEARRVFDGMPE----KNSVSWNAIIAGYV 308

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            C  M  A E+F  +  ++V SW  ++TGY   G +  AR +FD+MP+RD + W A+I G
Sbjct: 309 QCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAG 368

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           Y +     EAL LF EM+    R +  T  S L+ CA + ALELG+ V   + K  +++ 
Sbjct: 369 YAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESG 428

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
            +VGNAL+ MYCKCG+++ A  VF  +  K+  +W  MI G A +G G ++L +F  M +
Sbjct: 429 CYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKK 488

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             I+PD+VT VGVLSAC+HTG+VD+G EYF  MT  +GI  N  HY CM+DLLGRAG L+
Sbjct: 489 TGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLD 548

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           +A  ++KNMP +P++  WGALLGA R+H + E+ E AAK I E++PDN  +YVLL N+YA
Sbjct: 549 DAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYA 608

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
           A  RW +   +R  + DRG+KK PG S +E+   +H F  GD  HP+   IY  L+E+  
Sbjct: 609 ASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDL 668

Query: 623 DLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
            +K  GY+     V  DV EE+K   +  HSEKLA+AFG+++   G  IR++KNLR+C D
Sbjct: 669 KMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCED 728

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           CH   K +S +  R +I+RD  RFHHF  G CSC DYW
Sbjct: 729 CHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 209/475 (44%), Gaps = 70/475 (14%)

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
           D+ +   N  I+ +   G+ D A  +F+   +   ++WNAM SG     +F   R+LF +
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDL-------------DV--------GKRAHRYVKEC 245
           M  + ++  +V I    S C + ++L             DV        G   + YVKE 
Sbjct: 106 MPTRDLVSWNVMI----SGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEA 161

Query: 246 KIV------PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
           K +       N I  N +   Y   G +  A  +F +  + ++ISW  ++ GY+ R ++ 
Sbjct: 162 KEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLV 221

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
            AR  FD+MPERD V W  MI GY +     EA  LF E   S +R D FT  ++++   
Sbjct: 222 DARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE---SPVR-DVFTWTAMVSGYV 277

Query: 360 NLGALELGEWV-KTYIDKNKVK-NDIFVG-------------------------NALIDM 392
             G L+    V     +KN V  N I  G                         N +I  
Sbjct: 278 QNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITG 337

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y + GD+ +A+  F  M ++D  +W A+I G A +G+G+++L +F +M R     +  T+
Sbjct: 338 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTF 397

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
              LS C     ++ G++    + ++ G+E        ++ +  + G++++A  V + + 
Sbjct: 398 TSTLSTCAEIAALELGKQVHGRV-VKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE 456

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD--PDNEAVYVLLCNIYAACN 565
            K   + W  ++     H   + A M  + + +    PD+    V +  + +AC+
Sbjct: 457 EK-EVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDD----VTMVGVLSACS 506



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 122/298 (40%), Gaps = 27/298 (9%)

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
           + D++ W   +T ++  GQ D A + F+ MP R  + W AMI G L  ++F  A  LF +
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 339 MQTSNIRPDEFTIVSILTACA---NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
           M T ++     +   +++ C    NL A  L       +     + D+   NA++  Y +
Sbjct: 106 MPTRDL----VSWNVMISGCVRYRNLRAARL-------LFDQMPERDVVSWNAMLSGYAQ 154

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
            G V++A+ +F EM  K+  +W  M+     NG  + +  +F       +I         
Sbjct: 155 NGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELIS-------- 206

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
              C   G V   R   A        E +E  +  M+    + G L EA  + +  P++ 
Sbjct: 207 -WNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR- 264

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           +   W A++     +    M + A +    +   N   +  +   Y  C R D  REL
Sbjct: 265 DVFTWTAMVSG---YVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQAREL 319


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 265/718 (36%), Positives = 400/718 (55%), Gaps = 61/718 (8%)

Query: 19  LISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK----- 70
           L S +  C S+  ++    IH   +K G   N  V   LV        DM   CK     
Sbjct: 165 LGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLV--------DMYAKCKCVSEA 216

Query: 71  --VFRKIP--RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
             +F+ +   R +  LW  M+ GY++       V  +  M    V  + YTFP +L   +
Sbjct: 217 EFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACS 276

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
             +A  FG+++H  ++K GF S+V+VQ+AL+  Y  CG++  A+ + +    DDVV+WN+
Sbjct: 277 SVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNS 336

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG----KRAHRYV 242
           +  G+ R    +E  +LF  M  + +     T   VL+ C       VG    K  H  +
Sbjct: 337 LMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV------VGSINPKSVHGLI 390

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +       ++ NAL DMYA  G+M                               D A 
Sbjct: 391 IKTGFENYKLVSNALVDMYAKTGDM-------------------------------DCAY 419

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
             F++M E+D + WT+++ GY + N   E+L +F +M+ + + PD+F + SIL+ACA L 
Sbjct: 420 TVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELT 479

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            LE G+ V     K+ ++    V N+L+ MY KCG ++ A  +F  M  KD  TWTA+IV
Sbjct: 480 LLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIV 539

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A NG G  SL  +  M+ +   PD +T++G+L AC+H G+VDEGR+YF  M   +GI+
Sbjct: 540 GYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIK 599

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   HY CM+DL GR+G L+EA +++  M +KP++ VW +LL ACRVH + E+AE AA  
Sbjct: 600 PGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATN 659

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           + EL+P N   YV+L N+Y+A  +W++  ++R+++  +GI K PGCS +E+N  V+ F++
Sbjct: 660 LFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFIS 719

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
            D+ HP+  EIY K+DE+   +K  GY+PD+S    D+ +E KE  +  HSEKLA+AFGL
Sbjct: 720 DDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGL 779

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +++ P   IRI KNLR+C DCH   K +S V+ R +I+RD   FHHF+ G CSC DYW
Sbjct: 780 LAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 208/464 (44%), Gaps = 70/464 (15%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG--- 205
           S++  N L++     G+V+ AR +FD   + D  +WN M S Y  V +  E R+LF    
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCS 123

Query: 206 ----------------------------EMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
                                        M  +G   +  T+  VL  C+ L  +  G+ 
Sbjct: 124 CKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEM 183

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H +V +     N+ +   L DMYA C  +  A  +F  ++                   
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLE------------------- 224

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
                  FD+   +++VLWTAM+ GY +     +A+  FR M    +  +++T  +ILTA
Sbjct: 225 -------FDR---KNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTA 274

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
           C+++ A   GE V  +I K+   ++++V +AL+DMY KCGD++ A+ +   M   D  +W
Sbjct: 275 CSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSW 334

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
            +++VG   +G  +++L +F  M   ++  D+ T+  VL+ C   G ++    +   + I
Sbjct: 335 NSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSINPKSVH--GLII 391

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE--M 535
           + G E  +     +VD+  + G ++ A  V + M ++ + I W +L+     +   E  +
Sbjct: 392 KTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTGYAQNNSHEESL 450

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
                 ++  ++PD      ++ +I +AC         +Q+ LD
Sbjct: 451 KIFCDMRVTGVNPDQ----FIVASILSACAELTLLEFGKQVHLD 490


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 288/788 (36%), Positives = 429/788 (54%), Gaps = 94/788 (11%)

Query: 23  IETC---ESMHQLKQIHSQTIKLGLLTNPT-VQNKLVTF--------CCSEKGDMKYACK 70
           +E+C   +S+ + K IH   +K    T+ T + N  V F         CSE   +K A  
Sbjct: 16  LESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSE---LKIARH 72

Query: 71  VFRKIP-RP-SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
           VF K+P RP +V LWN +I+ Y+    ++  + +Y  ML   + P+ +TFPF+LK  +  
Sbjct: 73  VFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSAL 132

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
                G+E+HC + +   +S+V+V  AL+  Y  CG +D A+ +FD  +K DVV WN+M 
Sbjct: 133 KEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMI 192

Query: 189 SGYK-RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV----- 242
           SG+      +DE  +L  +M+   V P S TIV VL A A++  L  GK  H +      
Sbjct: 193 SGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGF 251

Query: 243 --------------KECK-------------IVPNLILENALTDMYAACGEMGFALEIFG 275
                          +C+             IV N +  +A+   Y  C  M  ALE+F 
Sbjct: 252 VGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFC 311

Query: 276 NIK--NKDVISWTAIVTGYINR-------------------------------------- 295
            +     DVI  +A+    + R                                      
Sbjct: 312 QLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYA 371

Query: 296 --GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
             G ++ A ++F++M  RD V +TA+I GY++     E L +F EMQ S I P++ T+ S
Sbjct: 372 KCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLAS 431

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L ACA+L  L  G     Y        D  + NALIDMY KCG ++ A++VF  M ++ 
Sbjct: 432 VLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRG 491

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +W  MI+   I+G G ++L +F  M    + PD+VT++ ++SAC+H+G+V EG+ +F 
Sbjct: 492 IVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFN 551

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
            MT   GI P   HY CMVDLL RAG   E    I+ MP++P+  VWGALL ACRV+++ 
Sbjct: 552 AMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNV 611

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           E+ E  +K+I +L P++   +VLL N+Y+A  RWD+  ++R    ++G +K+PGCS IE+
Sbjct: 612 ELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEI 671

Query: 594 NGVVHEFVAGD-KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQH 652
           +GVVH F+ G  +SHPQ  +I  KLDE+  ++K +GY  + S VF DV EE+KER +  H
Sbjct: 672 SGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYH 731

Query: 653 SEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHG 712
           SEKLA+AFG++S  P   I + KNLR+C DCH   K +S+V  R++ VRD +RFHHFK G
Sbjct: 732 SEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDG 791

Query: 713 SCSCKDYW 720
            C+C D+W
Sbjct: 792 ICNCGDFW 799


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/585 (40%), Positives = 365/585 (62%), Gaps = 4/585 (0%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  +L+ G   +  +   L  +Y   G +D +  +F+   + +V +++A+   + + +
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
            FD     + +M   GV P + T   VL +C+    L+ GK  H    +  +  +L +  
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRT 180

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
            L D+YA  G++  A ++F  +  + ++S T ++T Y   G++D AR  F+ M ERD V 
Sbjct: 181 GLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVC 240

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           W  MI GY +     E+L LFR M  +   P+E T++++L+AC  LGALE G W+ +YI+
Sbjct: 241 WNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIE 300

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
              ++ ++ VG ALIDMY KCG +E A+ VF  +  KD   W +MIVG A++G    +L 
Sbjct: 301 NKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQ 360

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +F +M      P ++T++G+LSAC H G+V+EGR +F  M  ++GIEP   HYGCMV+LL
Sbjct: 361 LFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLL 420

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
           GRAGHL EA  ++KNM +  + ++WG LLG CR+H + ++ E  AK +++    N   YV
Sbjct: 421 GRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYV 480

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
           LL N+YAA   W+   ++R ++ + GI+K  GCS IE++  VHEFVAG++ HP++KEIY+
Sbjct: 481 LLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYV 540

Query: 616 KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
            L+E+ S LK  GY P    V  D+ EE KE+++  HSEKLA+AFGLIS+ PG T++IVK
Sbjct: 541 MLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVK 600

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH + K++S +  R++++RD+ RFHHF+ G CSC DYW
Sbjct: 601 NLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 144/546 (26%), Positives = 234/546 (42%), Gaps = 99/546 (18%)

Query: 1   MFSNSSISPPSTLT--------------------QETP-LISPIETCESMHQLKQIHSQT 39
           +F+ S  SPPS  T                    QE     S I+  +S+  L QIH+  
Sbjct: 11  IFTASHPSPPSIFTTNRSSVLPSSSSTARTSDRFQEVERFASLIDKSKSVAHLLQIHASL 70

Query: 40  IKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNG 99
           ++ GL  NP +  KL     +  G +  +  VF     P+V  ++ +I  + +       
Sbjct: 71  LRRGLYHNPILNFKLQR-SYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRA 129

Query: 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
              Y  ML   V P+ +TF  +LK      ++E GK LHC  +K G  S ++V+  L+  
Sbjct: 130 FGYYSQMLSCGVEPNAFTFSSVLK----SCSLESGKVLHCQAIKLGLGSDLYVRTGLVDV 185

Query: 160 YC-----LC--------------------------GEVDMARGIFDVSYKDDVVTWNAMF 188
           Y      +C                          GE+D AR +F+   + DVV WN M 
Sbjct: 186 YARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMI 245

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
            GY +    +E+ KLF  M     +P  VT++ VLSAC +L  L+ G+  H Y++   I 
Sbjct: 246 GGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQ 305

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            N+ +  AL DMY+ CG +  A  +F  I++KDV++W +++ GY   G        F Q 
Sbjct: 306 INVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHG--------FSQ- 356

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG- 367
                                  AL LF EM  +  +P + T + IL+AC + G +E G 
Sbjct: 357 ----------------------HALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGR 394

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI--VGL 424
            + +   DK  ++  I     ++++  + G +E+A  + + M +  D   W  ++    L
Sbjct: 395 SFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRL 454

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
            +N    K  +  ++ L    + +  TYV + +    TG   EG      +  +HGIE  
Sbjct: 455 HVN---IKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNW-EGVAKMRTLMKEHGIEKE 510

Query: 485 EAHYGC 490
              +GC
Sbjct: 511 ---HGC 513


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/657 (38%), Positives = 382/657 (58%), Gaps = 35/657 (5%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A KVF K+P  ++  W  MI  ++++   ++ + ++LDM  S   PD +T+  +L   T 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC---GEVDMARGIFDVSYKDDVVTW 184
              +  GK+LH  V++ G    V V  +L+  Y  C   G VD +R +F+   + +V++W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 185 NAMFSGYKRVKQFD-ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
            A+ + Y +  + D E  +LF +M    + P   +   VL AC  L D   G++ + Y  
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           +  I     + N+L  MYA  G M                               + AR+
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRM-------------------------------EDARK 212

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
            FD + E++ V + A++DGY +  +  EA  LF E+  + I    FT  S+L+  A++GA
Sbjct: 213 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 272

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           +  GE +   + K   K++  + NALI MY +CG++E A +VF EM  ++  +WT+MI G
Sbjct: 273 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 332

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            A +G   ++L+MF +ML     P+E+TYV VLSAC+H GM+ EG+++F  M  +HGI P
Sbjct: 333 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 392

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              HY CMVDLLGR+G L EA+E I +MP+  +++VW  LLGACRVH + E+   AA+ I
Sbjct: 393 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 452

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           LE +PD+ A Y+LL N++A+  +W +  ++R+ + +R + K  GCS IE+   VH F  G
Sbjct: 453 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 512

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           + SHPQ  +IY +LD++ S +K +GY+PD   V  D+ EE KE+ ++QHSEK+A+AFGLI
Sbjct: 513 ETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLI 572

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+     IRI KNLR+C DCH   K +SM   RE++VRD  RFHH K+G CSC DYW
Sbjct: 573 STSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 154/317 (48%), Gaps = 6/317 (1%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q++S  +KLG+ +   V N L++   +  G M+ A K F  +   ++  +N ++ GY++
Sbjct: 176 EQVYSYAVKLGIASVNCVGNSLISMY-ARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 234

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               +   L++ ++  + +    +TF  LL G     A+  G+++H  +LK G+ S+  +
Sbjct: 235 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI 294

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NALIS Y  CG ++ A  +F+     +V++W +M +G+ +        ++F +M   G 
Sbjct: 295 CNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 354

Query: 213 LPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
            P  +T V VLSAC+ +  +  G K  +   KE  IVP +     + D+    G +  A+
Sbjct: 355 KPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAM 414

Query: 272 EIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVN 327
           E   ++    D + W  ++      G  ++ R   + + E+   D   +  + + +    
Sbjct: 415 EFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 474

Query: 328 RFREALTLFREMQTSNI 344
           ++++ + + + M+  N+
Sbjct: 475 QWKDVVKIRKSMKERNL 491


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/657 (38%), Positives = 382/657 (58%), Gaps = 35/657 (5%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A KVF K+P  ++  W  MI  ++++   ++ + ++LDM  S   PD +T+  +L   T 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC---GEVDMARGIFDVSYKDDVVTW 184
              +  GK+LH  V++ G    V V  +L+  Y  C   G VD +R +F+   + +V++W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 185 NAMFSGYKRVKQFD-ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
            A+ + Y +  + D E  +LF +M    + P   +   VL AC  L D   G++ + Y  
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           +  I     + N+L  MYA  G M                               + AR+
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRM-------------------------------EDARK 217

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
            FD + E++ V + A++DGY +  +  EA  LF E+  + I    FT  S+L+  A++GA
Sbjct: 218 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 277

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           +  GE +   + K   K++  + NALI MY +CG++E A +VF EM  ++  +WT+MI G
Sbjct: 278 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 337

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            A +G   ++L+MF +ML     P+E+TYV VLSAC+H GM+ EG+++F  M  +HGI P
Sbjct: 338 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 397

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              HY CMVDLLGR+G L EA+E I +MP+  +++VW  LLGACRVH + E+   AA+ I
Sbjct: 398 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 457

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           LE +PD+ A Y+LL N++A+  +W +  ++R+ + +R + K  GCS IE+   VH F  G
Sbjct: 458 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 517

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           + SHPQ  +IY +LD++ S +K +GY+PD   V  D+ EE KE+ ++QHSEK+A+AFGLI
Sbjct: 518 ETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLI 577

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+     IRI KNLR+C DCH   K +SM   RE++VRD  RFHH K+G CSC DYW
Sbjct: 578 STSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 154/317 (48%), Gaps = 6/317 (1%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q++S  +KLG+ +   V N L++   +  G M+ A K F  +   ++  +N ++ GY++
Sbjct: 181 EQVYSYAVKLGIASVNCVGNSLISMY-ARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 239

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               +   L++ ++  + +    +TF  LL G     A+  G+++H  +LK G+ S+  +
Sbjct: 240 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI 299

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NALIS Y  CG ++ A  +F+     +V++W +M +G+ +        ++F +M   G 
Sbjct: 300 CNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 359

Query: 213 LPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
            P  +T V VLSAC+ +  +  G K  +   KE  IVP +     + D+    G +  A+
Sbjct: 360 KPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAM 419

Query: 272 EIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVN 327
           E   ++    D + W  ++      G  ++ R   + + E+   D   +  + + +    
Sbjct: 420 EFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 479

Query: 328 RFREALTLFREMQTSNI 344
           ++++ + + + M+  N+
Sbjct: 480 QWKDVVKIRKSMKERNL 496


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/719 (36%), Positives = 389/719 (54%), Gaps = 50/719 (6%)

Query: 48  PTVQNKLVTFCCSEKGDMKYACKVFRKIP--RPSVCLWNTMIKGYSRIDSHKNGVLIYLD 105
           P     LV    +  G +  A   F  +P  R    L N +I  Y+R       V ++  
Sbjct: 88  PVAATSLVA-AYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRS 146

Query: 106 MLKS-DVRPDNYTFPFLLK--GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           +L S  +RPD+Y+F  LL   G   +I+V    +L C VLK G    + V NAL++ Y  
Sbjct: 147 LLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMK 206

Query: 163 C----------------------------------GEVDMARGIFD-VSYKDDVVTWNAM 187
           C                                  G+V  AR +F+ V  K DVV WNAM
Sbjct: 207 CEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVV-WNAM 265

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            SGY       E  +LF  M  + V     T   VLSACA       GK  H  +   ++
Sbjct: 266 ISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQIT--RL 323

Query: 248 VPNLILE------NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
            PN + E      NAL  +Y+ CG +  A  IF N+K+KDV+SW  I++GY+    +D A
Sbjct: 324 QPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKA 383

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
            + F++MP ++ + W  M+ GY+      +AL LF  M+  +++P ++T    ++AC  L
Sbjct: 384 VEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGEL 443

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
           G+L+ G+ +  ++ +   +     GNALI MY +CG V++A  +F  M   D  +W AMI
Sbjct: 444 GSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMI 503

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
             L  +GHG ++L++F +M+   I PD ++++ VL+AC H+G+VDEG +YF  M    GI
Sbjct: 504 SALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGI 563

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
            P E HY  ++DLLGRAG + EA ++IK MP +P   +W A+L  CR   D E+   AA 
Sbjct: 564 IPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAAD 623

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           Q+ ++ P ++  Y+LL N Y+A  RW +   +R+++ DRG+KK PGCS IE    VH FV
Sbjct: 624 QLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFV 683

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
            GD  HP+  ++Y  L+ + + ++ +GY+PD   V  D+    KE  ++ HSE+LA+ FG
Sbjct: 684 VGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFG 743

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           L+   PG T+ ++KNLR+C DCH +   +S    RE++VRD  RFHHFK G CSC +YW
Sbjct: 744 LLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 214/496 (43%), Gaps = 63/496 (12%)

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYKRVKQFDETR 201
           F  D       +L++ Y   G +  A   FD     + D V  NA+ S Y R        
Sbjct: 82  FRADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAV 141

Query: 202 KLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN-----LILEN 255
            +F  +   G L P   +   +LSA   L ++ V    H    +C ++ +     L + N
Sbjct: 142 AVFRSLLASGSLRPDDYSFTALLSAAGHLPNISV---RHCAQLQCSVLKSGAGGVLSVSN 198

Query: 256 ALTDMYAACGEMGF---ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           AL  +Y  C  +     A ++   + +KD ++WT +V GY+ RG V  AR  F+++  + 
Sbjct: 199 ALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKF 258

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK- 371
            V+W AMI GY+      EA  LFR M    +  DEFT  S+L+ACAN G    G+ V  
Sbjct: 259 DVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHG 318

Query: 372 --TYIDKNKVKNDIF-VGNALIDMYCKCGDVEKAQR------------------------ 404
             T +  N V      V NAL+ +Y KCG++  A+R                        
Sbjct: 319 QITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESS 378

Query: 405 -------VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
                  VF EM  K++ +W  M+ G    G  + +L +F++M    + P + TY G +S
Sbjct: 379 CLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAIS 438

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           AC   G +  G++    + +Q G E + +    ++ +  R G + EA  +   MP   +S
Sbjct: 439 ACGELGSLKHGKQLHGHL-VQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMP-NIDS 496

Query: 518 IVWGALLGACRVHRDA-EMAEMAAKQILE-LDPDNEAVYVLLCNIYAACNRW----DNFR 571
           + W A++ A   H    E  E+  + + E + PD     +    +  ACN      + F+
Sbjct: 497 VSWNAMISALGQHGHGREALELFDRMVAEGIYPDR----ISFLTVLTACNHSGLVDEGFQ 552

Query: 572 ELRQMILDRGIKKTPG 587
               M  D GI   PG
Sbjct: 553 YFESMKRDFGI--IPG 566



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 159/345 (46%), Gaps = 16/345 (4%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           P + L     L++    C ++   ++I        +++  T+ +  V   C +K     A
Sbjct: 329 PEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDK-----A 383

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            +VF ++P  +   W  M+ GY      ++ + ++  M   DV+P +YT+   +      
Sbjct: 384 VEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGEL 443

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            +++ GK+LH H+++ GF+ S    NALI+ Y  CG V  A  +F V    D V+WNAM 
Sbjct: 444 GSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMI 503

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKI 247
           S   +     E  +LF  M  +G+ P  ++ + VL+AC     +D G +    +K +  I
Sbjct: 504 SALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGI 563

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDM----AR 302
           +P       L D+    G +G A ++   +  +   S W AI++G    G +++    A 
Sbjct: 564 IPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAAD 623

Query: 303 QYFDQMPERD--YVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           Q F   P+ D  Y+L +   + Y    R+ +A  + + M+   ++
Sbjct: 624 QLFKMTPQHDGTYILLS---NTYSAAGRWVDAARVRKLMRDRGVK 665


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 259/773 (33%), Positives = 407/773 (52%), Gaps = 87/773 (11%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL---------- 82
           + +H+  +  G   N  + N+L+   C +  ++ YA K+F KIP+P +            
Sbjct: 25  RAVHAHILTSGFKPNTFILNRLINIYC-KSSNITYARKLFDKIPKPDIVARTTLLSAYSS 83

Query: 83  -----------------------WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
                                  +N MI  YS  +     + +++ M +    PD +TF 
Sbjct: 84  SGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFS 143

Query: 120 FLLKGFTRDIAVE--FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM--------- 168
            +L   +  IA E    + LHC V+K G      V NAL+S Y  C    +         
Sbjct: 144 SVLSALSL-IADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 169 ARGIFDVSYKDDV---------------------------------VTWNAMFSGYKRVK 195
           AR +FD + K+ +                                 V WNAM SGY R  
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRG 262

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACA----KLKDLDVGKRAHRYVKECKIVPN- 250
            ++E    F  M   G+     T   ++SAC     K+   + G++ H Y+    + P+ 
Sbjct: 263 LYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSH 322

Query: 251 ---LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
              L + NAL   Y     M  A  +F  +  +D+ISW A+++GY+N  +++ A   F +
Sbjct: 323 HFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSE 382

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           MPER+ + WT MI G  +     E L LF +M++  + P ++     +TAC+ LG+L+ G
Sbjct: 383 MPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNG 442

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           + + + + +    + +  GNALI MY +CG VE A+ VF  M   D  +W AMI  LA +
Sbjct: 443 QQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQH 502

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           GHG K++++F QM++  I+PD +T++ +L+AC H G++ EGR YF  M  ++GI P E H
Sbjct: 503 GHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDH 562

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y  ++DLL RAG   +A  VIK+MP +  + +W ALL  CR+H + E+   AA ++LEL 
Sbjct: 563 YARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELI 622

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P  +  Y++L N+YAA  +WD    +R ++ +RG+KK PGCS +E+  +VH F+  D  H
Sbjct: 623 PGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARH 682

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P+ + +Y  L ++ +++K +GY+PD   V  D+  E KE ++  HSEKLA+ +G++    
Sbjct: 683 PEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPL 742

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G TIR+ KNLR+C DCH   K +S V +RE++VRD+ RFHHFK+G CSC +YW
Sbjct: 743 GATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 64/371 (17%)

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
           + +  H ++      PN  + N L ++Y     + +A ++F  I   D+++ T +++ Y 
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 294 NRGQVDMARQYFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           + G V +A+Q F+  P   RD V + AMI  Y   N    AL LF +M+     PD FT 
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIF--VGNALIDMYCKCGD---------VE 400
            S+L+A + L A E       + +  K+   +   V NAL+  Y  C           + 
Sbjct: 143 SSVLSALS-LIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMA 201

Query: 401 KAQRVFREM-----------------LRKDKF----------------TWTAMIVGLAIN 427
            A++VF E                  +R D                   W AMI G    
Sbjct: 202 SARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRR 261

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC----THTGMVDEGREYFADMTIQHGIEP 483
           G  +++ D F +M    I  DE TY  ++SAC       GM + GR+    + ++  +EP
Sbjct: 262 GLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYI-LRTVVEP 320

Query: 484 NEAHY-----GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAE--- 534
           +  H+       ++    +   + EA  V   MP++ + I W A+L G     R  E   
Sbjct: 321 SH-HFVLSVNNALITFYTKYDRMIEARRVFDKMPVR-DIISWNAVLSGYVNAQRIEEANS 378

Query: 535 -MAEMAAKQIL 544
             +EM  + +L
Sbjct: 379 IFSEMPERNVL 389



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 3/173 (1%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           I+      S+   +QIHSQ I+LG  +  +  N L+T   S  G ++ A  VF  +P   
Sbjct: 430 ITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMY-SRCGVVESAESVFLTMPYVD 488

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE-LH 138
              WN MI   ++       + ++  M+K D+ PD  TF  +L        ++ G+    
Sbjct: 489 SVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFD 548

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSG 190
               ++G          LI   C  G    A+ +   + ++     W A+ +G
Sbjct: 549 TMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAG 601


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/609 (40%), Positives = 353/609 (57%), Gaps = 32/609 (5%)

Query: 113 PDNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
           P + TFP  LK  +R    +  G++LH   LK    ++  V  +L++ Y  CG +  A+ 
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +FD       V+W A+ + Y       E   +       G+ P S T V VL+ACA++ D
Sbjct: 175 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 234

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           L  G+   R  ++  I  ++ +  A  D+Y  CGEM                        
Sbjct: 235 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMA----------------------- 271

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
                    AR+ FD+M ++D V W AM+ GY      REAL LF  MQ   +RPD + +
Sbjct: 272 --------KAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAV 323

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
              L+AC  LGAL+LG      +D ++  ++  +G ALIDMY KCG   +A  VF++M +
Sbjct: 324 AGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRK 383

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           KD   W AMI+GL + GH   +  +  QM ++ +  ++ T++G+L +CTHTG++ +GR Y
Sbjct: 384 KDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRY 443

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531
           F +MT  + I P   HYGC+VDLL RAG L EA ++I +MPM  N+++ GALLG C++HR
Sbjct: 444 FHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHR 503

Query: 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMI 591
           +AE+AE    Q++ L+P N   YV+L NIY+   RW++  +LR  + ++G++K P CS +
Sbjct: 504 NAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWV 563

Query: 592 EMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQ 651
           E  G VHEF  GDKSHP + +IY KLDE+  ++K +GY P    V  DV +E+KE  +  
Sbjct: 564 EFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVH 623

Query: 652 HSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH 711
           HSEKLA+AF L+ +GPG TIR+ KNLR+C DCH   KL+S +  RE+IVRD  RFH F+ 
Sbjct: 624 HSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRD 683

Query: 712 GSCSCKDYW 720
           GSCSC DYW
Sbjct: 684 GSCSCNDYW 692



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 194/435 (44%), Gaps = 34/435 (7%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           PS LT    L S       +   +Q+H++++KL   TNP V   L+T   +  G +  A 
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLY-ARCGLLHRAQ 173

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF ++P PS   W  +I  Y      +  V +  +   + +RPD++T   +L    R  
Sbjct: 174 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 233

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            +  G+ +     + G   SVFV  A +  Y  CGE+  AR +FD     D V W AM  
Sbjct: 234 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVG 293

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY       E   LF  M+ +GV P    +   LSAC +L  LD+G++A R V   + + 
Sbjct: 294 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 353

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           N +L  AL DMYA CG    A  +F  ++ KD+I W A++ G    G             
Sbjct: 354 NPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHE----------- 402

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-E 368
                               + A TL  +M+ S ++ ++ T + +L +C + G ++ G  
Sbjct: 403 --------------------KTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 442

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
           +         +   I     ++D+  + G +++A ++  +M +  +     A++ G  I+
Sbjct: 443 YFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIH 502

Query: 428 GHGDKSLDMFSQMLR 442
            + + +  + +Q++R
Sbjct: 503 RNAELAEHVLTQLIR 517


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/693 (37%), Positives = 399/693 (57%), Gaps = 39/693 (5%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           +H   IK+GL  +  V   LV    S+ G M+ A  +F  +    V LWN M+KGY ++ 
Sbjct: 205 VHGYAIKIGLEWDVFVSGALVNIY-SKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLG 263

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKG--FTRDIAVEFGKELHCHVLKFGFDSSVFV 152
             K    ++ +  +S +RPD ++   +L G  +     +E GK++H   +K G DS V V
Sbjct: 264 LEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSV 323

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            N+L++ Y   G    AR +F+     D+++WN+M S   +    +E+  LF ++  +G+
Sbjct: 324 ANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL 383

Query: 213 LP-----TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
            P      S+T+     AC  L  LD GK+ H +  +     +L + + + DMY  CG+M
Sbjct: 384 KPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDM 443

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
                                    +N G V      F+ +   D V WT+MI G +   
Sbjct: 444 -------------------------VNAGIV------FNYISAPDDVAWTSMISGCVDNG 472

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
              +AL ++  M+ S + PDE+T  +++ A + + ALE G  +   + K    +D FVG 
Sbjct: 473 NEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGT 532

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           +L+DMY KCG++E A R+F++M  ++   W AM+VGLA +G+ ++++++F  M    I P
Sbjct: 533 SLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEP 592

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D V+++G+LSAC+H G+  E  EY   M   +GIEP   HY C+VD LGRAG + EA +V
Sbjct: 593 DRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKV 652

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           I+ MP K ++ +  ALLGACR+  D E  +  A ++  L+P + A YVLL NIYAA NRW
Sbjct: 653 IETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRW 712

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           D+  + R+M+  + +KK PG S I++  ++H FV  D+SHPQ   IY K++EM   ++  
Sbjct: 713 DDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIRED 772

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           GY+PD   V LDV +E+KER++Y HSEKLA+A+GLIS+    TIR++KNLR+C DCH   
Sbjct: 773 GYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAI 832

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           K +S V++RE+++RD  RFHHF+ G CSC DYW
Sbjct: 833 KYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 151/578 (26%), Positives = 276/578 (47%), Gaps = 51/578 (8%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           + T  S H L   K  H++ +  G   +  + N L+T   S+ G +  A +VF   P   
Sbjct: 84  LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMY-SKCGSLSSARQVFDTTPERD 142

Query: 80  VCLWNTMIKGY-SRIDSH----KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           +  WN ++  Y + +DS+    + G+ ++  +  S       T   +LK       +   
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           + +H + +K G +  VFV  AL++ Y  CG +  AR +FD   + DVV WN M  GY ++
Sbjct: 203 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSAC--AKLKDLDVGKRAHRYVKECKIVPNLI 252
               E  +LF E  R G+ P   ++ L+L+ C  A   DL++GK+ H    +  +  ++ 
Sbjct: 263 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVS 322

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + N+L +MY+  G   FA E+F ++K+ D+ISW ++++          A+   ++     
Sbjct: 323 VANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISS--------CAQSSLEE----- 369

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL-----TACANLGALELG 367
                             E++ LF ++    ++PD FT+ SI       AC  L  L+ G
Sbjct: 370 ------------------ESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQG 411

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           + +  +  K    +D+ V + ++DMY KCGD+  A  VF  +   D   WT+MI G   N
Sbjct: 412 KQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDN 471

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G+ D++L ++ +M ++ ++PDE T+  ++ A +    +++GR+  A++ I+     +   
Sbjct: 472 GNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANV-IKLDCVSDPFV 530

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE-- 545
              +VD+  + G++ +A  + K M ++ N  +W A+L     H +AE A    K +    
Sbjct: 531 GTSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHG 589

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           ++PD  +   +L     A    + +  L  M  D GI+
Sbjct: 590 IEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIE 627



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 133/307 (43%), Gaps = 28/307 (9%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L       +L +GK  H  +       +  L N L  MY+ CG +  A ++F     +D
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           +++W AI+  Y                         A +D        +E L LFR ++ 
Sbjct: 143 LVTWNAILGAY------------------------AASVDS--NDGNAQEGLHLFRLLRA 176

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
           S       T+  +L  C N G L   E V  Y  K  ++ D+FV  AL+++Y KCG +  
Sbjct: 177 SLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRD 236

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A+ +F  M  +D   W  M+ G    G   ++  +FS+  R+ + PDE +   +L+ C  
Sbjct: 237 ARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLW 296

Query: 462 TGMVD-EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
            G  D E  +    + ++ G++ + +    +V++  + G    A EV  +M    + I W
Sbjct: 297 AGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISW 355

Query: 521 GALLGAC 527
            +++ +C
Sbjct: 356 NSMISSC 362



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 2/185 (1%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           LI       ++ Q +Q+H+  IKL  +++P V   LV    ++ G+++ A ++F+K+   
Sbjct: 499 LIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDM-YAKCGNIEDAYRLFKKMNVR 557

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-DIAVEFGKEL 137
           ++ LWN M+ G ++  + +  V ++  M    + PD  +F  +L   +   +  E  + L
Sbjct: 558 NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYL 617

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H     +G +  +   + L+      G V  A  + +        + N    G  R++  
Sbjct: 618 HSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGD 677

Query: 198 DETRK 202
            ET K
Sbjct: 678 VETGK 682


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/658 (38%), Positives = 391/658 (59%), Gaps = 40/658 (6%)

Query: 72   FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
            ++ + + +V  WN++I   +R       +  +  + K  + P   +FP  +K  +    +
Sbjct: 1099 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 1158

Query: 132  EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
              G+  H     FGF++ +FV +ALI  Y  CG++  AR +FD     +VV+W +M +GY
Sbjct: 1159 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGY 1218

Query: 192  KRVKQFDETRKLF-------GEMERKGVLPT-SVTIVLVLSACAKLKDLDVGKRAHRYVK 243
             + +Q D    LF        E+E    +P  SV +V VLSAC+++    + +  H +V 
Sbjct: 1219 VQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVV 1278

Query: 244  ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
            +     ++ + N L D YA CG                               Q  ++++
Sbjct: 1279 KKGFDGSIGVGNTLMDAYAKCG-------------------------------QPLVSKK 1307

Query: 304  YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLG 362
             FD M E+D + W +MI  Y +     EAL +F  M +   +R +  T+ ++L ACA+ G
Sbjct: 1308 VFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAG 1367

Query: 363  ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            AL  G+ +   + K  ++ ++ VG ++IDMYCKCG VE A++ F  M  K+  +WTAM+ 
Sbjct: 1368 ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVA 1427

Query: 423  GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
            G  ++G   ++LD+F +M+RA + P+ +T+V VL+AC+H G+V+EG  +F  M  ++ IE
Sbjct: 1428 GYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIE 1487

Query: 483  PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
            P   HYGCMVDL GRAG LNEA  +IK M MKP+ +VWG+LLGACR+H++ ++ E+AA++
Sbjct: 1488 PGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQK 1547

Query: 543  ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
            + ELDPDN   YVLL N+YA   RW +   +R ++ +R + K PG S++E+ G VH F+ 
Sbjct: 1548 LFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLV 1607

Query: 603  GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
            GDK HP  + IY  L+++T +L+ +GY+P+++ V  DV EE+KE  +  HSEKLA+AFG+
Sbjct: 1608 GDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGV 1667

Query: 663  ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            ++S PG TI I+KNLR+C DCH + KL+S +  R+ +VRD  RFHHFK G CSC DYW
Sbjct: 1668 MNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 215/383 (56%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           +++H  +++ G  +   +   LI  Y   G +  A  +F         TWN +       
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
              ++   L+  M  +G+     T   V+ AC     +D+GK  H  + +     ++ ++
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N L D Y  CG   FAL++F  ++ ++V+SWT +++G I+ G +  AR+ FD++P ++ V
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            WTAMI+GY+R  +  EAL LF+ MQ  NI P+E+T+VS++ AC  +G L LG  +  Y 
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            KN ++  +++G ALIDMY KCG ++ A  VF  M RK   TW +MI  L ++G G ++L
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++FS+M R ++ PD +T++GVL AC H   V EG  YF  MT  +GI P   HY CM +L
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL 403

Query: 495 LGRAGHLNEALEVIKNMPMKPNS 517
             R+ +L+EA +  K +    NS
Sbjct: 404 YARSNNLDEAFKSTKEVGSLANS 426



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 181/379 (47%), Gaps = 69/379 (18%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           ++ C++   L+QIH++ I+ GL  +  +  KL+    S  G + YA  +F +I  P    
Sbjct: 34  LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLY-STHGRIAYAILLFYQIQNPCTFT 92

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN +I+  +     +  +++Y +M+   +  D +TFPF++K  T  ++++ GK +H  ++
Sbjct: 93  WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI 152

Query: 143 KFGFDSSVFVQNALISTY-------------------------------CLCGEVDMARG 171
           K+GF   VFVQN LI  Y                                 CG++  AR 
Sbjct: 153 KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARR 212

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           IFD     +VV+W AM +GY R +Q +E  +LF  M+ + + P   T+V ++ AC ++  
Sbjct: 213 IFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGI 272

Query: 232 LDVGKRAHRY-VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
           L +G+  H Y +K C I   + L  AL DMY+ CG +  A+E+F  +  K + +W +++T
Sbjct: 273 LTLGRGIHDYAIKNC-IEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMIT 331

Query: 291 --GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
             G    GQ                                 EAL LF EM+  N++PD 
Sbjct: 332 SLGVHGLGQ---------------------------------EALNLFSEMERVNVKPDA 358

Query: 349 FTIVSILTACANLGALELG 367
            T + +L AC ++  ++ G
Sbjct: 359 ITFIGVLCACVHIKNVKEG 377



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 207/449 (46%), Gaps = 48/449 (10%)

Query: 23   IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
            I++C ++  L   +  H Q    G  T+  V + L+    S+ G +K A  +F +IP  +
Sbjct: 1149 IKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMY-SKCGQLKDARALFDEIPLRN 1207

Query: 80   VCLWNTMIKGYSRIDSHKNGVLIYLDMLK--------SDVRPDNYTFPFLLKGFTRDIAV 131
            V  W +MI GY + +   N +L++ D L+        ++V  D+     +L   +R    
Sbjct: 1208 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 1267

Query: 132  EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
               + +H  V+K GFD S+ V N L+  Y  CG+  +++ +FD   + D ++WN+M + Y
Sbjct: 1268 GITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVY 1327

Query: 192  KRVKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
             +     E  ++F  M R  GV   +VT+  VL ACA    L  GK  H  V +  +  N
Sbjct: 1328 AQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYN 1387

Query: 251  LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
            + +  ++ DMY  CG +  A + F  +K K+V SWTA+V GY   G              
Sbjct: 1388 VCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHG-------------- 1433

Query: 311  RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EW 369
                             R +EAL +F +M  + ++P+  T VS+L AC++ G +E G  W
Sbjct: 1434 -----------------RAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHW 1476

Query: 370  VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
                  K  ++  I     ++D++ + G + +A  + + M ++ D   W +++    I  
Sbjct: 1477 FNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRI-- 1534

Query: 429  HGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            H +  L   +      + PD   Y  +LS
Sbjct: 1535 HKNVDLGEIAAQKLFELDPDNCGYYVLLS 1563



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 147/333 (44%), Gaps = 20/333 (6%)

Query: 35   IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
            +H   +K G   +  V N L+    ++ G    + KVF  +       WN+MI  Y++  
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTLMD-AYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSG 1331

Query: 95   SHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
                 + ++  M++   VR +  T   +L       A+  GK +H  V+K   + +V V 
Sbjct: 1332 LSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVG 1391

Query: 154  NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
             ++I  YC CG V+MA+  FD   + +V +W AM +GY    +  E   +F +M R GV 
Sbjct: 1392 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 1451

Query: 214  PTSVTIVLVLSACAKLKDLDVG-----KRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
            P  +T V VL+AC+    ++ G        H+Y     I P +     + D++   G + 
Sbjct: 1452 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKY----DIEPGIEHYGCMVDLFGRAGCLN 1507

Query: 269  FALEIFGNIKNK-DVISWTAIVTGYINRGQVDM----ARQYFDQMPER--DYVLWTAMID 321
             A  +   +K K D + W +++        VD+    A++ F+  P+    YVL + +  
Sbjct: 1508 EAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYA 1567

Query: 322  GYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
               R         L +  Q   ++P  F++V +
Sbjct: 1568 DAGRWADVERMRMLMKNRQL--VKPPGFSLVEL 1598



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 140/328 (42%), Gaps = 43/328 (13%)

Query: 299  DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
            ++A  ++  + + +   W ++I    R     EAL  F  ++   + P   +    + +C
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 1152

Query: 359  ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
            + L  L  G            + D+FV +ALIDMY KCG ++ A+ +F E+  ++  +WT
Sbjct: 1153 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 1212

Query: 419  AMIVGLAINGHGDKSLDMFSQMLRASI-------IP-DEVTYVGVLSACTHTG--MVDEG 468
            +MI G   N   D +L +F   L           +P D V  V VLSAC+      + EG
Sbjct: 1213 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG 1272

Query: 469  REYFA-----DMTIQHGIEPNEAHYGC-----------------------MVDLLGRAGH 500
               F      D +I  G    +A+  C                       M+ +  ++G 
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 1332

Query: 501  LNEALEV----IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD-NEAVYV 555
              EALEV    ++++ ++ N++   A+L AC         +    Q++++D + N  V  
Sbjct: 1333 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 1392

Query: 556  LLCNIYAACNRWDNFRELRQMILDRGIK 583
             + ++Y  C R +  ++    + ++ +K
Sbjct: 1393 SIIDMYCKCGRVEMAKKTFDRMKEKNVK 1420


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/702 (34%), Positives = 396/702 (56%), Gaps = 33/702 (4%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           LI      +S  Q KQ+H+Q I+   L++ +    +V    +    +  A  VF+ +  P
Sbjct: 11  LIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSAS--IVISIYTNLKLLHEALLVFKTLESP 68

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            V  W ++I+ ++        +  +++M  S   PD+  FP +LK  T  + + FG+ +H
Sbjct: 69  PVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVH 128

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
             +++ G D  ++  NAL++ Y     +D  R +F++  + DVV++N + +GY +   ++
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYE 188

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           +  ++  EM    + P + T+  VL   ++  D+  GK  H YV    I  ++ + ++L 
Sbjct: 189 DALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLV 248

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA                                  +++ + + F  +  RD + W +
Sbjct: 249 DMYA-------------------------------KSARIEDSERVFSHLYRRDSISWNS 277

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           ++ GY++  R+ EAL LFR+M ++ +RP      S++ ACA+L  L LG+ +  Y+ +  
Sbjct: 278 LVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGG 337

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
              +IF+ +AL+DMY KCG+++ A+++F  M   D+ +WTA+I+G A++GHG +++ +F 
Sbjct: 338 FGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFE 397

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M R  + P++V +V VL+AC+H G+VDE   YF  MT  +G+     HY  + DLLGRA
Sbjct: 398 EMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRA 457

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G L EA + I  M ++P   VW  LL +C VH++ E+AE  A++I  +D +N   YVL+C
Sbjct: 458 GKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMC 517

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           N+YA+  RW    +LR  +  +G++K P CS IEM    H FV+GD+SHP    I   L 
Sbjct: 518 NMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLK 577

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
            +   ++  GY+ D S V  DV EE K   ++ HSE+LA+AFG+I++ PG TIR+ KN+R
Sbjct: 578 AVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIR 637

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C DCH   K +S + +RE+IVRD +RFHHF  GSCSC DYW
Sbjct: 638 ICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/710 (37%), Positives = 403/710 (56%), Gaps = 18/710 (2%)

Query: 23  IETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTF-----CCSEKGDMKYACKVFRK 74
           +  C  +  LK    IH   +K G++ N  V N LV       C  E      A  VF  
Sbjct: 249 LSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVRE------AQAVFDL 302

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           +P  +V  WN++   Y      + G+ ++ +M  + V+PD      +L   ++   ++ G
Sbjct: 303 MPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSG 362

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K +H   +K G    VFV  AL++ Y  C  V  A+ +FD+    +VVTWN++ S Y   
Sbjct: 363 KTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNC 422

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
               +   +F EM   GV P  VT++ +L AC+ L+DL  GK  H +     +V ++ + 
Sbjct: 423 GFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVC 482

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP----E 310
           NAL  +YA C  +  A  +F  I +++V SW  I+T Y    + +     F QM     +
Sbjct: 483 NALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVK 542

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
            D + W+ +I G ++ +R  EA+ +FR+MQT   +PDE TI SIL AC+    L +G+ +
Sbjct: 543 ADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEI 602

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             Y+ ++    D+   NAL+DMY KCG +  ++ VF  M  KD F+W  MI    ++G+G
Sbjct: 603 HCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNG 662

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
            ++L +F +ML + + PD  T+  VLSAC+H+ +V+EG + F  M+  H +EP   HY C
Sbjct: 663 KEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTC 722

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           +VD+  RAG L EA   I+ MPM+P +I W A L  CRV+++ E+A+++AK++ E+DP+ 
Sbjct: 723 VVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNG 782

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
            A YV L NI      W    ++R+++ +RGI KTPGCS   +   VH FVAGDKS+ ++
Sbjct: 783 SANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMES 842

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
            +IY  LDE+ + +K  GY PD   V  D+ +E+K  ++  HSEKLA+AFG+++     T
Sbjct: 843 DKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNGQST 902

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IR+ KNLR+C DCH   K +S V    ++VRD  RFHHFK+G+CSCKD+W
Sbjct: 903 IRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 158/623 (25%), Positives = 284/623 (45%), Gaps = 98/623 (15%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF-----C 58
           N   + P T++   P  S ++  +S    K+IH   ++ G++ +  V +  V F     C
Sbjct: 135 NKVKANPLTVSSILPGCSDLQDLKSG---KEIHGFVVRHGMVEDVFVSSAFVNFYAKCLC 191

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
             E      A  VF  +P   V  WN++   Y      + G+ ++ +M+   V+PD  T 
Sbjct: 192 VRE------AQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTV 245

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY--CLCGEVDMARGIFDVS 176
             +L   +    ++ GK +H   LK G   +VFV NAL++ Y  CLC  V  A+ +FD+ 
Sbjct: 246 SCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLC--VREAQAVFDLM 303

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
              +V+TWN++ S Y       +   +F EM   GV P  + +  +L AC++LKDL  GK
Sbjct: 304 PHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGK 363

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
             H +  +  +V ++ +  AL ++YA C  +  A  +F  + +++V++W ++ + Y+N G
Sbjct: 364 TIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCG 423

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
                       P++                     L +FREM  + ++PD  T++SIL 
Sbjct: 424 -----------FPQK--------------------GLNVFREMVLNGVKPDLVTMLSILH 452

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           AC++L  L+ G+ +  +  ++ +  D+FV NAL+ +Y KC  V +AQ VF  +  ++  +
Sbjct: 453 ACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVAS 512

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W  ++     N   +K L MFSQM R  +  DE+T+  V+  C     ++E  E F  M 
Sbjct: 513 WNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQ 572

Query: 477 IQHGIEPNE-----------------------------------AHYGCMVDLLGRAGHL 501
              G +P+E                                   A    +VD+  + G L
Sbjct: 573 TM-GFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGL 631

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLLCNI 560
           + +  V   MP+K +   W  ++ A  +H + + A  +  K +L +   + A +     +
Sbjct: 632 SLSRNVFDMMPIK-DVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTC---V 687

Query: 561 YAACNRWDNFRELRQMILDRGIK 583
            +AC+          M+++ G++
Sbjct: 688 LSACS--------HSMLVEEGVQ 702



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 195/432 (45%), Gaps = 34/432 (7%)

Query: 99  GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
            + IY       ++PD   F  + K           K+ H    + G  S V + NA I 
Sbjct: 24  AIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIH 83

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y  C  V+ AR +FD     DVVTWN++ + Y       +   +F +M    V    +T
Sbjct: 84  AYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLT 143

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           +  +L  C+ L+DL  GK  H +V    +V ++ + +A  + YA C  +  A  +F  + 
Sbjct: 144 VSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMP 203

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
           ++DV++W ++ + Y+N G            P++                     L +FRE
Sbjct: 204 HRDVVTWNSLSSCYVNCG-----------FPQK--------------------GLNVFRE 232

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M    ++PD  T+  IL+AC++L  L+ G+ +  +  K+ +  ++FV NAL+++Y  C  
Sbjct: 233 MVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLC 292

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           V +AQ VF  M  ++  TW ++       G   K L++F +M    + PD +    +L A
Sbjct: 293 VREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPA 352

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C+    +  G+       ++HG+  +      +V+L      + EA  V   MP + N +
Sbjct: 353 CSQLKDLKSGKTIHG-FAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHR-NVV 410

Query: 519 VWGALLGACRVH 530
            W + L +C V+
Sbjct: 411 TWNS-LSSCYVN 421



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 152/333 (45%), Gaps = 34/333 (10%)

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           +E  K++     +G+ P     + V  ACA  +D    K+ H     C ++ ++ + NA 
Sbjct: 22  NEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAF 81

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
              Y  C  +  A  +F ++  +DV++W ++   Y+N G        F Q          
Sbjct: 82  IHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCG--------FPQ---------- 123

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                        + L +FR+M  + ++ +  T+ SIL  C++L  L+ G+ +  ++ ++
Sbjct: 124 -------------QGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRH 170

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            +  D+FV +A ++ Y KC  V +AQ VF  M  +D  TW ++       G   K L++F
Sbjct: 171 GMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVF 230

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
            +M+   + PD VT   +LSAC+    +  G+       ++HG+  N      +V+L   
Sbjct: 231 REMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHG-FALKHGMVENVFVSNALVNLYES 289

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
              + EA  V   MP + N I W + L +C V+
Sbjct: 290 CLCVREAQAVFDLMPHR-NVITWNS-LASCYVN 320


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/643 (39%), Positives = 377/643 (58%), Gaps = 30/643 (4%)

Query: 107 LKSDVRPDNYTFPF-------LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
           + S +   N TF F       L K FT        K+LH   +K G          +I  
Sbjct: 1   MNSTIYNPNRTFNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIK- 59

Query: 160 YCLCG--EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ---FDETRKLFGEMERKG-VL 213
           +C     ++D AR +F    + +   WN +              E   LF  M   G V 
Sbjct: 60  FCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVK 119

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P   T   VL ACA+   L  GK+ H  + +     +  + + L  MY  C  M  A  +
Sbjct: 120 PNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSL 179

Query: 274 F-GNI---------------KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
           F  N+               ++ +V+ W  ++ G +  G +  A+  FD+MP+R  V W 
Sbjct: 180 FCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWN 239

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
            MI GY +   F EA+ LF+EMQ+SNI P+  T+VS+L A A +GALELG+W+  Y  KN
Sbjct: 240 VMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKN 299

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
           K++ D  +G+AL+DMY KCG +++A +VF  + +++  TW+A+I   A++G  + ++  F
Sbjct: 300 KIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHF 359

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
             M +A + P++V Y+G+LSAC+H G+V+EGR +F+ M    G++P   HYGCMVDLLGR
Sbjct: 360 HLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGR 419

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
           AGHL EA E+I+NMP++P+ ++W ALLGAC++H++ +M E  A+ ++EL P +   YV L
Sbjct: 420 AGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVAL 479

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            N+YA+   W+    +R  +    I+K PGCS IE++G++HEF+  D SH + KEI   L
Sbjct: 480 SNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAML 539

Query: 618 DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
            EM+  L+  GY P+  EVFL+  E+++ RA+  HSEK+A+AFGLIS+ P   ++IVKNL
Sbjct: 540 GEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNL 599

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+C DCH   KL+S++Y R++IVRD+ RFH F+HGSCSC DYW
Sbjct: 600 RICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/476 (26%), Positives = 220/476 (46%), Gaps = 89/476 (18%)

Query: 4   NSSISPPS---TLTQETPLI--SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC 58
           NS+I  P+     + + PLI   P  +C++   LKQ+H+  IK G + +P    +++ FC
Sbjct: 2   NSTIYNPNRTFNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFC 61

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI-DSH--KNGVLIYLDML-KSDVRPD 114
                D+ YA  VFR++P P+   WNT+++  +   D H     ++++  ML    V+P+
Sbjct: 62  AFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPN 121

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC----------- 163
            +TFP +LK   R   +  GK++H  ++KFGF    FV + L+  Y +C           
Sbjct: 122 RFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFC 181

Query: 164 ------------------------------------GEVDMARGIFDVSYKDDVVTWNAM 187
                                               G++  A+ +FD   +  VV+WN M
Sbjct: 182 KNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVM 241

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            SGY +   F E   LF EM+   + P  VT+V VL A A++  L++GK  H Y  + KI
Sbjct: 242 ISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKI 301

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             + +L +AL DMY+ CG +  AL++F  +  ++ I+W+AI+  +   G           
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHG----------- 350

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                               R  +A+  F  M  + + P++   + IL+AC++ G +E G
Sbjct: 351 --------------------RAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEG 390

Query: 368 EWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
               +++ K   ++  I     ++D+  + G +E+A+ + R M +  D   W A++
Sbjct: 391 RSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALL 446



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 7/291 (2%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD+K A  +F ++P+ SV  WN MI GY++       + ++ +M  S++ P+  T   +L
Sbjct: 218 GDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVL 277

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
               R  A+E GK +H +  K   +    + +AL+  Y  CG +D A  +F+   K + +
Sbjct: 278 PAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAI 337

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY- 241
           TW+A+   +    + ++    F  M + GV P  V  + +LSAC+    ++ G+    + 
Sbjct: 338 TWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHM 397

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVTGYINRGQVD 299
           VK   + P +     + D+    G +  A E+  N  I+  DVI W A++        + 
Sbjct: 398 VKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVI-WKALLGACKMHKNLK 456

Query: 300 MARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           M  +  + + E    D   + A+ + Y  +  +     +  +M+  +IR D
Sbjct: 457 MGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD 507


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/624 (40%), Positives = 370/624 (59%), Gaps = 28/624 (4%)

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCG--EVDMARGIFDVS 176
           PF      RD+     K+LH   +K G          +I  +C     ++D AR +F   
Sbjct: 25  PFTSCKTPRDL-----KQLHAIFIKTGQIQDPLTAAEVIK-FCAFSSRDIDYARAVFRQM 78

Query: 177 YKDDVVTWNAMFSGYKRVKQ---FDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDL 232
            + +   WN +              E   LF  M   G V P   T   VL ACA+   L
Sbjct: 79  PEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRL 138

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF-GNI-------------- 277
             GK+ H  + +     +  + + L  MY  C  M  A  +F  N+              
Sbjct: 139 REGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKR 198

Query: 278 -KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
            ++ +V+ W  ++ G +  G +  A+  FD+MP R  V W  MI GY +   F EA+ LF
Sbjct: 199 KQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLF 258

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
           +EMQ+SNI P+  T+VS+L A A +GALELG+W+  Y  KNKV+ D  +G+AL+DMY KC
Sbjct: 259 QEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKC 318

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G ++KA +VF  + +++  TW+A+I   A++G  + ++  F  M +A + P++V Y+G+L
Sbjct: 319 GSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGIL 378

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+H G+V+EGR +F+ M    G++P   HYGCMVDLLGRAGHL EA E+I+NMP++P+
Sbjct: 379 SACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPD 438

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
            ++W ALLGAC++H++ +M E  A+ ++EL P +   YV L N+YA+   W+    +R  
Sbjct: 439 DVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLK 498

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           +    I+K PGCS IE++G++HEF+  D SH + KEI   L EM+  L+  GY P+  EV
Sbjct: 499 MKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEV 558

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
           FL+  E+++ RA+  HSEK+A+AFGLIS+ P   ++IVKNLR+C DCH   KL+S++Y R
Sbjct: 559 FLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKR 618

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           ++IVRD+ RFH F+HGSCSC DYW
Sbjct: 619 QIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 219/476 (46%), Gaps = 89/476 (18%)

Query: 4   NSSISPPS---TLTQETPLI--SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC 58
           NS+I  P+     + + PLI   P  +C++   LKQ+H+  IK G + +P    +++ FC
Sbjct: 2   NSTIYNPNRTLNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFC 61

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI-DSH--KNGVLIYLDML-KSDVRPD 114
                D+ YA  VFR++P P+   WNT+++  +   D H     ++++  ML    V+P+
Sbjct: 62  AFSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPN 121

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC----------- 163
            +TFP +LK   R   +  GK++H  ++KFGF    FV + L+  Y +C           
Sbjct: 122 RFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFC 181

Query: 164 ------------------------------------GEVDMARGIFDVSYKDDVVTWNAM 187
                                               G++  A+ +FD      VV+WN M
Sbjct: 182 KNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVM 241

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            SGY +   F E   LF EM+   + P  VT+V VL A A++  L++GK  H Y  + K+
Sbjct: 242 ISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKV 301

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             + +L +AL DMY+ CG +  AL++F  +  ++ I+W+AI+  +   G           
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHG----------- 350

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                               R  +A+  F  M  + + P++   + IL+AC++ G +E G
Sbjct: 351 --------------------RAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEG 390

Query: 368 EWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
               +++ K   ++  I     ++D+  + G +E+A+ + R M +  D   W A++
Sbjct: 391 RSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALL 446



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 134/291 (46%), Gaps = 7/291 (2%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD+K A  +F ++P  SV  WN MI GY++       + ++ +M  S++ P+  T   +L
Sbjct: 218 GDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVL 277

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
               R  A+E GK +H +  K   +    + +AL+  Y  CG +D A  +F+   K + +
Sbjct: 278 PAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAI 337

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY- 241
           TW+A+   +    + ++    F  M + GV P  V  + +LSAC+    ++ G+    + 
Sbjct: 338 TWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHM 397

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVTGYINRGQVD 299
           VK   + P +     + D+    G +  A E+  N  I+  DVI W A++        + 
Sbjct: 398 VKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVI-WKALLGACKMHKNLK 456

Query: 300 MARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           M  +  + + E    D   + A+ + Y  +  +     +  +M+  +IR D
Sbjct: 457 MGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD 507


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/609 (40%), Positives = 353/609 (57%), Gaps = 32/609 (5%)

Query: 113 PDNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
           P + TFP  LK  +R    +  G++LH   LK    ++  V  +L++ Y  CG +  A+ 
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +FD       V+W A+ + Y       E   +       G+ P S T V VL+ACA++ D
Sbjct: 128 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 187

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           L  G+   R  ++  I  ++ +  A  D+Y  CGEM                        
Sbjct: 188 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMA----------------------- 224

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
                    AR+ FD+M ++D V W AM+ GY      REAL LF  MQ   +RPD + +
Sbjct: 225 --------KAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAV 276

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
              L+AC  LGAL+LG      +D ++  ++  +G ALIDMY KCG   +A  VF++M +
Sbjct: 277 AGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRK 336

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           KD   W AMI+GL + GH   +  +  QM ++ +  ++ T++G+L +CTHTG++ +GR Y
Sbjct: 337 KDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRY 396

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531
           F +MT  + I P   HYGC+VDLL RAG L EA ++I +MPM  N+++ GALLG C++HR
Sbjct: 397 FHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHR 456

Query: 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMI 591
           +AE+AE    Q++ L+P N   YV+L NIY+   RW++  +LR  + ++G++K P CS +
Sbjct: 457 NAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWV 516

Query: 592 EMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQ 651
           E  G VHEF  GDKSHP + +IY KLDE+  ++K +GY P    V  DV +E+KE  +  
Sbjct: 517 EFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVH 576

Query: 652 HSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH 711
           HSEKLA+AF L+ +GPG TIR+ KNLR+C DCH   KL+S +  RE+IVRD  RFH F+ 
Sbjct: 577 HSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRD 636

Query: 712 GSCSCKDYW 720
           GSCSC DYW
Sbjct: 637 GSCSCNDYW 645



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 194/435 (44%), Gaps = 34/435 (7%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           PS LT    L S       +   +Q+H++++KL   TNP V   L+T   +  G +  A 
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLY-ARCGLLHRAQ 126

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF ++P PS   W  +I  Y      +  V +  +   + +RPD++T   +L    R  
Sbjct: 127 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 186

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            +  G+ +     + G   SVFV  A +  Y  CGE+  AR +FD     D V W AM  
Sbjct: 187 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVG 246

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY       E   LF  M+ +GV P    +   LSAC +L  LD+G++A R V   + + 
Sbjct: 247 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 306

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           N +L  AL DMYA CG    A  +F  ++ KD+I W A++ G    G             
Sbjct: 307 NPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHE----------- 355

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-E 368
                               + A TL  +M+ S ++ ++ T + +L +C + G ++ G  
Sbjct: 356 --------------------KTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 395

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
           +         +   I     ++D+  + G +++A ++  +M +  +     A++ G  I+
Sbjct: 396 YFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIH 455

Query: 428 GHGDKSLDMFSQMLR 442
            + + +  + +Q++R
Sbjct: 456 RNAELAEHVLTQLIR 470


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/626 (39%), Positives = 379/626 (60%), Gaps = 20/626 (3%)

Query: 28  SMHQLKQIHSQTIKLGLL----TNPTVQNKLVTFCCSEKGDMK---YACKVFRKIPRP-- 78
           S   L ++H+  +  GLL    T+P +   +  F  S+    +   +A  +   +P P  
Sbjct: 20  SFRVLLKLHAHHLVSGLLSSHSTSPFIDRLVAAFAHSDPASPRPLLHALAILASLPSPPD 79

Query: 79  SVCLWNTMIKGYSR------IDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAV 131
           S   +N   +  S       +D H   + +Y  +L S   RPD+ TFPFL+K   R    
Sbjct: 80  SAFPYNAAFRALSLCPHQHLVDRH--CLPLYRALLHSGSARPDHLTFPFLIKACARLQYR 137

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
            +G  +  HV K GF + VFV NA +  + + G +  AR +FD S   DVV+WN +  GY
Sbjct: 138 SYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGY 197

Query: 192 KRVKQFDETRKLFGEMERKG--VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
            R     E  +LF  +   G  V P  VT++  +S CA++ DL++GKR H +V    +  
Sbjct: 198 VRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRC 257

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
            + L NA+ DMY  CG +  A  +F  I N+  +SWT ++ G+   G ++ AR  FD+MP
Sbjct: 258 TVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMP 317

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ERD   W A++ GY++  + +EA+ LF EMQ S + P+E T+V++L+AC+ LGALE+G W
Sbjct: 318 ERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMW 377

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           V  YID++K+   + +G +L+DMY KCG+++KA  VF E+  ++  TWT+MI GLA +GH
Sbjct: 378 VHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGH 437

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
            D++++ F +M+   + PDE+T++GVLSAC H G+V+ GR++F+ M  ++ +E    HY 
Sbjct: 438 ADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYS 497

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           CM+DLLGRAGHL+EA +++  MPM P+++VWGAL  ACR+H +  + E AA +++ELDP 
Sbjct: 498 CMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPS 557

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           +  +YVLL N+YA  N      ++R M+   G++K PGCS IE+NGVVHEF+  DKSH  
Sbjct: 558 DSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLD 617

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISE 635
           T  IY  L E+T  ++ +  + DISE
Sbjct: 618 TNAIYDCLHEITLQMRHIANLIDISE 643


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 251/636 (39%), Positives = 376/636 (59%), Gaps = 32/636 (5%)

Query: 86  MIKGYSRIDSHKNGVLIYLDM-LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF 144
           MI G+ +    ++ + ++ DM L +  R D  T   +L        ++ G ++ C  +K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           GF S V +   LIS +  CGEV++AR +F    K D+++ NAM SG+    + +++ +LF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
            E+   G   +S TIV ++   +           H Y+  C              ++  C
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPF--------GHSYLCNC--------------IHGFC 158

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
            ++G        I +   +S TA+ T Y    ++  ARQ FD+  E+    W AMI G  
Sbjct: 159 VKLG--------IVSHSSVS-TALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCT 209

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
           +      A++LF+ MQ +N+ P+  T+ SIL+ACA +GAL LGEWV + I  N+ +++++
Sbjct: 210 QNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVY 269

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           V  ALIDMY KCG +  A+ +F  M  K++ TW AMI G  ++GHG ++L +F  ML +S
Sbjct: 270 VSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSS 329

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           + P  +T++ VL AC+H G+V EG   F  M    G EP   HY CMVD+LGRAG L +A
Sbjct: 330 VKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKA 389

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
           LE IK MP++P   VWGALLGAC +H+D  +A +A++++ ELDP+N   YVL+ NIY+  
Sbjct: 390 LEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVE 449

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
            ++     +RQ+   + + KTPGC++IE+  V H F +GD+SHPQ+K IY +LD++T  +
Sbjct: 450 RKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKM 509

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
              G+  + + V  D+ EE+KE  +  HSEKLA+AFGLIS+ PG  IRI+KNLR+C+DCH
Sbjct: 510 TEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCH 569

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              K +S +  R ++VRD  RFHHFK G CSC DYW
Sbjct: 570 NWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 128/273 (46%), Gaps = 5/273 (1%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           + S+      ST+    P+ SP       +    IH   +KLG++++ +V   L T  C 
Sbjct: 123 LLSSGERVSSSTIVGLIPVYSPFG---HSYLCNCIHGFCVKLGIVSHSSVSTALTTVYC- 178

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
              +M +A ++F +    ++  WN MI G ++       + ++  M K++V P+  T   
Sbjct: 179 RLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTS 238

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +L    +  A+  G+ +H  +    F+S+V+V  ALI  Y  CG + +AR +FD+  + +
Sbjct: 239 ILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKN 298

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-H 239
            VTWNAM SGY       E  KLF +M    V PT +T + VL AC+    +  G    H
Sbjct: 299 EVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFH 358

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALE 272
             V +    P       + D+    G++  ALE
Sbjct: 359 TMVHDFGFEPLAEHYACMVDILGRAGQLKKALE 391


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/708 (36%), Positives = 396/708 (55%), Gaps = 5/708 (0%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTN-PTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           P  S   + +S    KQ+ S  +   + TN P+     +       GD + A ++F  IP
Sbjct: 34  PFFSITHSTQSSSIWKQLTSTKVAPSVPTNIPSHLGLRLLKAALNVGDFRRAQQLFDNIP 93

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           +P     +T+I  ++        + +Y  +    ++P N  F  + K           KE
Sbjct: 94  QPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKE 153

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H   ++ G  S  F+ NALI  Y  C  V+ AR +FD     DVV+W +M S Y     
Sbjct: 154 VHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGL 213

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
                 +F EM   GV P SVT+  +L AC++LKDL  G+  H +     ++ N+ + +A
Sbjct: 214 PRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSA 273

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP----ERD 312
           L  +YA C  +  A  +F  + ++DV+SW  ++T Y    + D     F QM     E D
Sbjct: 274 LVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEAD 333

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
              W A+I G +   +  +A+ + R+MQ    +P++ TI S L AC+ L +L +G+ V  
Sbjct: 334 EATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHC 393

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           Y+ ++ +  D+    AL+ MY KCGD+  ++ VF  + RKD   W  MI+  A++G+G +
Sbjct: 394 YVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGRE 453

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
            L +F  ML++ I P+ VT+ GVLS C+H+ +V+EG + F  M   H +EP+  HY CMV
Sbjct: 454 VLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMV 513

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           D+  RAG L+EA E I+ MPM+P +  WGALLGACRV+++ E+A+++A ++ E++P+N  
Sbjct: 514 DVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPG 573

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YV L NI      W    E R ++ +RGI KTPGCS +++   VH FV GDK++ ++ +
Sbjct: 574 NYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDK 633

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY  LDE+   +K  GY PD   V  D+ +E+K  ++  HSEKLA+AFG+++     +IR
Sbjct: 634 IYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIR 693

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + KNLR+C DCH   K VS V    +IVRD  RFHHF++G+CSC+D W
Sbjct: 694 VFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/597 (40%), Positives = 370/597 (61%), Gaps = 14/597 (2%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM---ARGIFDVSYKDDVVTWNAMFSGY 191
           ++ H  +++ G  S   +   LI+        D    A  +FD   + D   +N +  G+
Sbjct: 39  RQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGF 98

Query: 192 --KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
              ++   +    L+  M +  VLP + T   +L AC K++    G + H ++ +     
Sbjct: 99  LHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQH---GMQIHAHLFKFGFGA 155

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           + +  N+L  MY     +  A  +F  I + D +SWT++++GY   G +D A   F  MP
Sbjct: 156 HSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMP 215

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP-DEFTIVSILTACANLGALELGE 368
           +++   W AM+  Y++ NRF EA  LF  M+  N    D+F   ++L+AC  LGAL+ G+
Sbjct: 216 QKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGK 275

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF--TWTAMIVGLAI 426
           W+  YI +N ++ D  +  A++DMYCKCG +EKA +VF  +    ++  +W  MI GLA+
Sbjct: 276 WIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAM 335

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G+G+ ++ +F +M R  + PD++T++ +L+AC H+G+V+EGR YF+ M   +GIEP   
Sbjct: 336 HGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRME 395

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           H+GCMVDLLGRAG + EA ++I  MP+ P+  V G LLGAC+ HR+ E+ E   ++++EL
Sbjct: 396 HFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIEL 455

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           +P+N   YVLL N+YA   +W++  ++R+++ DRG+KK PG SMIE+ G VHEF+AG+++
Sbjct: 456 EPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERN 515

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG---EEDKERAVYQHSEKLAMAFGLI 663
           HPQ KE++ K+ EM   LK VGY+ D + V        EED E  +Y HSEKLA+AFGL 
Sbjct: 516 HPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGLS 575

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + PG T+RI+KNLR+C DCH   KL+S V+DRE+IVRD+TRFH FK G CSC+DYW
Sbjct: 576 RTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 202/439 (46%), Gaps = 71/439 (16%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC--SEKGDMKYACKVFRKIPRPSV 80
            E C+SM QL+Q HSQ I+LGL ++  +   L+ FC   S    + YA K+F  IP+P  
Sbjct: 29  FEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDA 88

Query: 81  CLWNTMIKGY--SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            L+NT+IKG+  S++    + +L+Y  ML++ V P+N+TFP LL    +   ++ G ++H
Sbjct: 89  FLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRK---IQHGMQIH 145

Query: 139 CHVLKFGFDSSVFVQN-------------------------------ALISTYCLCGEVD 167
            H+ KFGF +     N                               +LIS Y   G +D
Sbjct: 146 AHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLID 205

Query: 168 MARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM--ERKGVLPTSVTIVLVLSA 225
            A  IF +  + +  +WNAM + Y +  +F E   LF  M  E   VL   V   + LSA
Sbjct: 206 EAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTM-LSA 264

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           C  L  LD GK  H Y+K   I  +  L  A+ DMY  CG +  AL++F ++        
Sbjct: 265 CTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLP------- 317

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                                 +P R    W  MI G         A+ LF+EM+   + 
Sbjct: 318 ----------------------LPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVA 355

Query: 346 PDEFTIVSILTACANLGALELGEWVKTY-IDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           PD+ T +++LTACA+ G +E G    +Y I    ++  +     ++D+  + G V +A++
Sbjct: 356 PDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARK 415

Query: 405 VFREMLRKDKFTWTAMIVG 423
           +  EM      T    ++G
Sbjct: 416 LIDEMPVSPDVTVLGTLLG 434


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 272/735 (37%), Positives = 410/735 (55%), Gaps = 60/735 (8%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           + + L+Q+H+Q I   L  +      L+  C   +    Y   +F     P+V ++ +M+
Sbjct: 13  NFNHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSML 72

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           + YS +  H   VL+Y  M    VRPD + +P L+K      A   G   H HVLK G  
Sbjct: 73  RFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKS-----AGTGGIGFHAHVLKLGHG 127

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFD--VSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           S  FV+NA+I  Y   G +  AR +FD    Y+  V  WNAM SGY + +   + + LF 
Sbjct: 128 SDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFD 187

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
            M  + V    +T   +++  AK+KDL+  +R      +C    +++  NA+   YA  G
Sbjct: 188 VMPERNV----ITWTAMVTGYAKVKDLEAARRYF----DCMPERSVVSWNAMLSGYAQNG 239

Query: 266 EMGFALEIFGNIKNK----DVISW-----------------------------------T 286
               AL +F  + N     D  +W                                   T
Sbjct: 240 LAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRT 299

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IR 345
           A++  Y   G +D AR+ F+ MP R+ V W +MI GY +  +   A+ LF+EM T+  + 
Sbjct: 300 ALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT 359

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           PDE T+VS+++AC +LGALELG WV  ++ +N++K  I   NA+I MY +CG +E A+RV
Sbjct: 360 PDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRV 419

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F+EM  +D  ++  +I G A +GHG +++++ S M    I PD VT++GVL+AC+H G++
Sbjct: 420 FQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLL 479

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           +EGR+ F  +      +P   HY CMVDLLGR G L +A   ++ MPM+P++ V+G+LL 
Sbjct: 480 EEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLN 534

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           A R+H+  E+ E+AA ++ EL+PDN   ++LL NIYA+  RW +   +R+ +   G+KKT
Sbjct: 535 ASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKT 594

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
            G S +E  G +H+F+  D+SH ++ +IY  L E+   ++  GY+ D S V  DV EE+K
Sbjct: 595 TGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEK 654

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           E  V  HSEKLA+ + L+ S  G  IR+VKNLR+C DCH   K++S +  R +IVRD  R
Sbjct: 655 EEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNR 714

Query: 706 FHHFKHGSCSCKDYW 720
           FH F  G CSCKDYW
Sbjct: 715 FHCFNDGLCSCKDYW 729


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/719 (36%), Positives = 393/719 (54%), Gaps = 67/719 (9%)

Query: 5   SSISPPSTLTQETPLISPIETCESMH---QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           S I P      E  L S +  C  +    + K IH   IKLG   +P   N LV    ++
Sbjct: 252 SGIKP-----NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMY-AK 305

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
            GD+  A  VF KI +P +  WN +I G    + H+  +                     
Sbjct: 306 VGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQAL--------------------- 344

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
                 ++  +  ++LH  ++K   +S +FV   L+  Y  C  ++ AR  F++  + D+
Sbjct: 345 ------ELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 398

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           + WNA+ SGY +  +  E   LF EM ++G+     T+  +L + A L+ + V ++ H  
Sbjct: 399 IAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGL 458

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
             +     ++ + N+L D Y  C                                 V+ A
Sbjct: 459 SVKSGFHSDIYVVNSLIDSYGKCS-------------------------------HVEDA 487

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
            + F++    D V +T+MI  Y +  +  EAL LF EMQ   ++PD F   S+L ACANL
Sbjct: 488 ERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANL 547

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            A E G+ +  +I K     DIF GN+L++MY KCG ++ A R F E+  +   +W+AMI
Sbjct: 548 SAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMI 607

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            GLA +GHG ++L +F+QML+  + P+ +T V VL AC H G+V E + YF  M    G 
Sbjct: 608 GGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGF 667

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           +P + HY CM+DLLGRAG +NEA+E++  MP + N+ VWGALLGA R+H+D E+   AA+
Sbjct: 668 KPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAE 727

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
            +  L+P+    +VLL NIYA+  +W+N  E+R+++ D  +KK PG S IE+   V+ F+
Sbjct: 728 MLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFL 787

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
            GD+SH +++EIY KLDE++  +   GY+P +     DV + +KE  +Y HSEKLA+AFG
Sbjct: 788 VGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFG 847

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LI++  G  IR+ KNLR+CVDCH   K +  +  RE+IVRD  RFHHFK GSCSC DYW
Sbjct: 848 LIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 163/602 (27%), Positives = 290/602 (48%), Gaps = 53/602 (8%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P++++  + L+S   T +S+    QIH+   K GL  +P+++N L+    S+     YA 
Sbjct: 54  PTSVSY-SKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLY-SKCRXFGYAR 111

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           K+  +   P +  W+ +I GY++       ++ + +M    V+ + +TF  +LK  +   
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVK 171

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            +  GK++H  V+  GF+  VFV N L+  Y  C E   ++ +FD   + +VV+WNA+FS
Sbjct: 172 DLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFS 231

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
            Y +     E   LF EM   G+ P   ++  +++AC  L+D   GK  H Y+ +     
Sbjct: 232 CYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW 291

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG------------------ 291
           +    NAL DMYA  G++  A+ +F  IK  D++SW A++ G                  
Sbjct: 292 DPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351

Query: 292 ----------------YINRGQVDM---------ARQYFDQMPERDYVLWTAMIDGYLRV 326
                           +++ G VDM         AR  F+ +PE+D + W A+I GY + 
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 411

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
               EAL+LF EM    I  ++ T+ +IL + A L  + +   V     K+   +DI+V 
Sbjct: 412 WEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVV 471

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           N+LID Y KC  VE A+R+F E    D  ++T+MI   A  G G+++L +F +M    + 
Sbjct: 472 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 531

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD      +L+AC +    ++G++    + +++G   +      +V++  + G +++A  
Sbjct: 532 PDRFVCSSLLNACANLSAFEQGKQLHVHI-LKYGFVLDIFAGNSLVNMYAKCGSIDDAGR 590

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAAC 564
               +  +   + W A++G    H     A     Q+L+  + P+    ++ L ++  AC
Sbjct: 591 AFSELTER-GIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPN----HITLVSVLGAC 645

Query: 565 NR 566
           N 
Sbjct: 646 NH 647



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 167/349 (47%), Gaps = 33/349 (9%)

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           D     +L  +D  K +  P + ++  LL       ++  G ++H H+ K G      ++
Sbjct: 37  DPQTTAILNLID--KGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIR 94

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N LI+ Y  C     AR + D S + D+V+W+A+ SGY +          F EM   GV 
Sbjct: 95  NHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
               T   VL AC+ +KDL +GK+ H  V       ++ + N L  MYA C E       
Sbjct: 155 CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF------ 208

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                                   +D +++ FD++PER+ V W A+   Y++ +   EA+
Sbjct: 209 ------------------------LD-SKRLFDEIPERNVVSWNALFSCYVQXDFCGEAV 243

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LF EM  S I+P+EF++ S++ AC  L     G+ +  Y+ K     D F  NAL+DMY
Sbjct: 244 GLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMY 303

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
            K GD+  A  VF ++ + D  +W A+I G  ++ H +++L++  QM R
Sbjct: 304 AKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 3/190 (1%)

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
           N  P   +   +L+ C    +L  G  +  +I K+ + +D  + N LI++Y KC     A
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYA 110

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           +++  E    D  +W+A+I G A NG G  +L  F +M    +  +E T+  VL AC+  
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
             +  G++    + +  G E +      +V +  +     ++  +   +P + N + W A
Sbjct: 171 KDLRIGKQVHGVVVVS-GFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPER-NVVSWNA 228

Query: 523 LLGACRVHRD 532
           L  +C V  D
Sbjct: 229 LF-SCYVQXD 237


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/588 (40%), Positives = 359/588 (61%), Gaps = 33/588 (5%)

Query: 135 KELHCHVLKFG--FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H   ++ G   ++    ++ + +   L   +  A  +F V +  +V TWN +  GY 
Sbjct: 35  KQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYA 94

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
                      + +M    V P + T   +L A +K  ++  G+  H           + 
Sbjct: 95  ESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVF 154

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           ++N+L  +YAACG+                                + A + F+ M ERD
Sbjct: 155 VQNSLLHIYAACGD-------------------------------TESAYKVFELMKERD 183

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W +MI+G+    R  EALTLFREM    + PD FT+VS+L+A A LGALELG  V  
Sbjct: 184 LVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHV 243

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           Y+ K  +  +  V N+L+D+Y KCG + +AQRVF EM  ++  +WT++IVGLA+NG G++
Sbjct: 244 YLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEE 303

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L++F +M    ++P E+T+VGVL AC+H GM+DEG EYF  M  + GI P   HYGCMV
Sbjct: 304 ALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMV 363

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLL RAG + +A E I+NMP++PN+++W  LLGAC +H    + E+A   +L L+P +  
Sbjct: 364 DLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSG 423

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVLL N+YA+  RW + + +R+ +L  G+KKTPG S++E+   V+EF  GD+SHPQ+++
Sbjct: 424 DYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQD 483

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           +Y  L+++T  LK  GY+P  + V  D+ EE+KE+A+  HSEK+A+AF L+++ PG  IR
Sbjct: 484 VYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIR 543

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++KNLR+C DCH   KL++ +YDRE+++RD++RFHHF+ GSCSCKDYW
Sbjct: 544 VMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 138/426 (32%), Positives = 225/426 (52%), Gaps = 40/426 (9%)

Query: 12  TLTQETPL---ISPIETC-ESMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCCSEKGDMK 66
           + T E PL   IS ++ C  S H+LKQIH+ +I+ G+ L NP +   L+    S    M 
Sbjct: 10  STTPENPLTKCISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMS 69

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           YA  VF  I  P+V  WNT+I+GY+  D+     L Y  M+ S V PD +T+PFLLK  +
Sbjct: 70  YAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAIS 129

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           + + V  G+ +H   ++ GF+S VFVQN+L+  Y  CG+ + A  +F++  + D+V WN+
Sbjct: 130 KSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNS 189

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M +G+    + +E   LF EM  +GV P   T+V +LSA A+L  L++G+R H Y+ +  
Sbjct: 190 MINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVG 249

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
           +  N  + N+L D+YA CG +  A  +F  +  ++ +SWT+++ G               
Sbjct: 250 LSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVG--------------- 294

Query: 307 QMPERDYVLWTAMIDGYLRVNRF-REALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
                            L VN F  EAL LF+EM+   + P E T V +L AC++ G L+
Sbjct: 295 -----------------LAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLD 337

Query: 366 LG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVG 423
            G E+ +   ++  +   I     ++D+  + G V++A    + M ++ +   W  ++  
Sbjct: 338 EGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGA 397

Query: 424 LAINGH 429
             I+GH
Sbjct: 398 CTIHGH 403


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/628 (40%), Positives = 365/628 (58%), Gaps = 43/628 (6%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGE---VDMARGIF-----DVSYKDDVVTWNA 186
           K+LHC + K G D        L++          +D AR  F     DV   D +   N+
Sbjct: 42  KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNS 101

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           +  GY       E   L+  M   GV P   T   VLS C K+     G + H  V +  
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMG 161

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY-------------- 292
           +  ++ ++N L   YA CG M    ++F  +  ++V+SWT+++ GY              
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFF 221

Query: 293 --INR-------------GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
             +N+             G +D A++ FD+  +R+ VL+  ++  Y R    REAL +  
Sbjct: 222 EMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILD 281

Query: 338 EMQTSNIRPDEFTIVSILTACANL-----GALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           EM     RPD  T++S ++A A L     G +  G WV TYI+KN +  D+ +  AL+DM
Sbjct: 282 EMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDM 341

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           + +CGD + A +VF +M  +D   WTA I  +A+ G+G+ +  +F+QML   + PD V +
Sbjct: 342 FARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLF 401

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           V VL+AC+H G V++G   F+ M   HGI P   HYGCMVDLLGRAG L EA ++IK+MP
Sbjct: 402 VQVLTACSHGGQVEQGLHIFSLME-DHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMP 460

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
           M+PN +VWG+LL ACRVH++ EMA  AA++I EL P    V+VLL NIYA+  +W +   
Sbjct: 461 MEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVAR 520

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R  + ++G++K PG S +++NGV+HEF +GD+SHP+   I L L EM       G++PD
Sbjct: 521 VRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPD 580

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
           +S V LDV E++KE  + +HSEKLA+AFGLI++G  + IR+VKNLRMC DCH  AK+ S+
Sbjct: 581 LSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASI 640

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +Y+RE+IVRD  RFH F+ G CSC DYW
Sbjct: 641 IYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 214/496 (43%), Gaps = 104/496 (20%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC--SEK 62
           + I     +T+++ L   +  C++++QLKQ+H Q  K GL   P+   KLV      +  
Sbjct: 14  TQIKEADPMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASP 73

Query: 63  GDMKYACKVFRKIPRP-----SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
             + YA K F           ++ + N++I+GYS     +  +L+Y+ ML   V P++YT
Sbjct: 74  ESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYT 133

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           FPF+L G T+  A   G ++H  V+K G +  VF+QN LI  Y  CG +D    +F+   
Sbjct: 134 FPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS 193

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEM------------------------------ 207
           + +VV+W ++  GY R  +  E   LF EM                              
Sbjct: 194 ERNVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECV 253

Query: 208 --------------ERKGVLPTSVTI-------------VLVLSA---CAKLKDLDVGKR 237
                          R+G+   ++ I             V +LSA    A+L DL  GK 
Sbjct: 254 DRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKV 313

Query: 238 -----AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
                 H Y+++  I  ++ L  AL DM+A CG+   A+++F  +  +DV +WTA +   
Sbjct: 314 CHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTM 373

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G  + A   F+QM          +I G                     ++PD    V
Sbjct: 374 AMEGNGEGATGLFNQM----------LIQG---------------------VKPDVVLFV 402

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LR 411
            +LTAC++ G +E G  + + ++ + +   I     ++D+  + G + +A  + + M + 
Sbjct: 403 QVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPME 462

Query: 412 KDKFTWTAMIVGLAIN 427
            +   W +++    ++
Sbjct: 463 PNDVVWGSLLAACRVH 478



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 111/258 (43%), Gaps = 14/258 (5%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G +  A ++F +    ++ L+NT++  Y+R    +  + I  +ML+   RPD  T    +
Sbjct: 240 GAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAI 299

Query: 123 KGFTRDIAVEFGKE-----LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
               + + + +GK      +H ++ K G    + +  AL+  +  CG+   A  +F+   
Sbjct: 300 SASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT 359

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           + DV  W A           +    LF +M  +GV P  V  V VL+AC+    ++ G  
Sbjct: 360 ERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLH 419

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-----KDVISWTAIVTGY 292
               +++  I P +     + D+    G  G   E F  IK+      DV+ W +++   
Sbjct: 420 IFSLMEDHGISPQIEHYGCMVDLL---GRAGLLREAFDLIKSMPMEPNDVV-WGSLLAAC 475

Query: 293 INRGQVDMARQYFDQMPE 310
                V+MA    +++ E
Sbjct: 476 RVHKNVEMATYAAERINE 493


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/742 (35%), Positives = 401/742 (54%), Gaps = 54/742 (7%)

Query: 32  LKQIHSQTIKLGLLT---------NPTVQNKLVTFCCSEKGDMKYACKVFRKIP--RPSV 80
           L+ +H  T+   L T          P     LV+   +  G ++ +   F  +P  R   
Sbjct: 64  LRLLHLYTLSPDLATPAVLFRADPGPVAATSLVS-AYAVAGRLRDSAAFFDSVPVARRDT 122

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLK--GFTRDIAVEFGKE 136
            L N MI  ++R       V ++  +L SD  +RPD+Y+F  LL   G   D+AV    +
Sbjct: 123 VLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQ 182

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLC--------------------------------- 163
           LHC V K G  + + V NALI+ Y  C                                 
Sbjct: 183 LHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVR 242

Query: 164 -GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
            G+V  AR  F+    +  V WNAM SGY +     E  +LF  M  K + P   T   +
Sbjct: 243 KGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSL 302

Query: 223 LSACAKLKDLDVGKRAH-RYVK-ECKIVPN--LILENALTDMYAACGEMGFALEIFGNIK 278
           LSACA       GK  H ++++ +   VP   L + NAL  +Y+  G++  A +IF ++ 
Sbjct: 303 LSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMT 362

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
            KDV+SW  I++GYI  G +D A + F +MP +  + W  M+ GY+      +AL LF +
Sbjct: 363 LKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQ 422

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M++ +++P ++T    + AC  LGAL+ G+ +  ++ +   +     GNAL+ MY +CG 
Sbjct: 423 MRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGA 482

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           V+ A+ VF  M   D  +W AMI  L  +GHG ++L++F QM+   I PD ++++ +L+A
Sbjct: 483 VKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTA 542

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C H G+VD+G +YF  M    GI P E HY  ++DLLGRAG + EA ++IK MP +P   
Sbjct: 543 CNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPA 602

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           +W A+L  CR++ D E+   AA Q+ ++ P+++  Y+LL N Y+A  RW +   +R+++ 
Sbjct: 603 IWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMR 662

Query: 579 DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL 638
           DRG+KK PGCS IE+   VH F+ GD  HP   E+Y  L+ + + ++ +GY+PD      
Sbjct: 663 DRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQ 722

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
           D+   +KE  ++ HSE+LA++FGL+    G T+ ++KNL++C DCH     +S    RE+
Sbjct: 723 DMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREI 782

Query: 699 IVRDKTRFHHFKHGSCSCKDYW 720
           +VRD  RFHHFK G CSC +YW
Sbjct: 783 VVRDVRRFHHFKDGECSCGNYW 804


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/452 (50%), Positives = 309/452 (68%)

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A ++F  I +++++  TA+++GY   G+V+ AR  FDQM E+D V W+AMI GY   ++
Sbjct: 1   MAQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDK 60

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
            +EAL LF EMQ   I+PD+ TI+S+++ACA LG L+  +W+  Y+DKN +   + V NA
Sbjct: 61  PQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNA 120

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDMY KCG++  A+ VF +M  ++  +WT+MI   AI+G    +L  F QM   +I P+
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPN 180

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
            VT+VGVL AC+H G+V+EGR  FA MT +H I P   HYGCMVDL GRA  L +ALE++
Sbjct: 181 GVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELV 240

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
           + MP+ PN ++WG+L+ AC++H + E+ E AAKQ+LEL+PD++   V L NIYA   RW 
Sbjct: 241 ETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQ 300

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
           +  ELR ++  RGI K  GCS IE+N  V+EFV  DK H Q  +IY KLDE+  +LK VG
Sbjct: 301 DVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVG 360

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           Y P+   V +DV EE K+  V  HSEKLA+ +GL+  G G  IRIVKNLR+C DCH   K
Sbjct: 361 YTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIK 420

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LVS VY  E+IVRD+TRFHH+K G CSC DYW
Sbjct: 421 LVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 142/302 (47%), Gaps = 35/302 (11%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           ++ V  A+IS Y   G V+ AR IFD   + D+V W+AM SGY    +  E   LF EM+
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
             G+ P  VTI+ V+SACA+L  LD  K  H YV +  +   L + NAL DMYA CG +G
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLG 132

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A  +F  +++++VISWT+++  +   G                                
Sbjct: 133 AARGVFEKMQSRNVISWTSMINAFAIHGDAS----------------------------- 163

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGN 387
              AL  F +M+  NI+P+  T V +L AC++ G +E G     +  +++ +        
Sbjct: 164 --NALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYG 221

Query: 388 ALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
            ++D++ +   +  A  +   M L  +   W +++    I  HG+  L  F+      + 
Sbjct: 222 CMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQI--HGENELGEFAAKQVLELE 279

Query: 447 PD 448
           PD
Sbjct: 280 PD 281



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 133/294 (45%), Gaps = 7/294 (2%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           S  G ++ A  +F ++    +  W+ MI GY+  D  +  + ++ +M    ++PD  T  
Sbjct: 25  SRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTIL 84

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            ++    R   ++  K +H +V K G   ++ V NALI  Y  CG +  ARG+F+     
Sbjct: 85  SVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSR 144

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           +V++W +M + +          K F +M+ + + P  VT V VL AC+    ++ G+R  
Sbjct: 145 NVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTF 204

Query: 240 -RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQ 297
                E  I P       + D++     +  ALE+   +    +V+ W +++      G+
Sbjct: 205 ASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGE 264

Query: 298 VDM----ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
            ++    A+Q  +  P+ D  L   + + Y +  R+++   L   M+   I  +
Sbjct: 265 NELGEFAAKQVLELEPDHDGAL-VQLSNIYAKDRRWQDVGELRNLMKQRGISKE 317


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/693 (36%), Positives = 386/693 (55%), Gaps = 40/693 (5%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVT--FCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           + +H+Q    GL +       L    F C    D +   +VF ++P      WN ++ GY
Sbjct: 36  RAVHAQLEARGLASESIASTALANMYFKCRRPADAR---RVFDRMPSRDRVAWNAVVAGY 92

Query: 91  SR--IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
           +R  + S     ++ +   +   RPD+ T   +L       A+   +E+H   L+ G D 
Sbjct: 93  ARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDE 152

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
            V V  A++  YC CG V+ AR +FD     + V+WNAM  GY       E   LF  M 
Sbjct: 153 LVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMV 212

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
           ++GV  T  +++  L AC +L  LD  +R H  +    +  N+ + NAL   YA C    
Sbjct: 213 QEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCK--- 269

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP-ERDYVLWTAMIDGYLRVN 327
                                       + D+A Q F+++  ++  + W AMI G+ +  
Sbjct: 270 ----------------------------RADLAAQVFNELGNKKTRISWNAMILGFTQNE 301

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
              +A  LF  MQ  N+RPD FT+VS++ A A++       W+  Y  ++++  D++V  
Sbjct: 302 CPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLT 361

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           ALIDMY KCG V  A+R+F     +   TW AMI G   +G G  ++++F +M     +P
Sbjct: 362 ALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLP 421

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           +E T++ VL+AC+H G+VDEG++YFA M   +G+EP   HYG MVDLLGRAG L+EA   
Sbjct: 422 NETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSF 481

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           IKNMP++P   V+GA+LGAC++H++ E+AE +A+ I EL P+    +VLL NIYA  + W
Sbjct: 482 IKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMW 541

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
            +   +R  +  +G++KTPG S+I++   VH F +G  +H   K+IY +L ++  ++K +
Sbjct: 542 KDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDM 601

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           GY+PD   +  DV ++ K + +  HSEKLA+A+GLI + PG TI+I KNLR+C DCH   
Sbjct: 602 GYVPDTDSIH-DVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHNAT 660

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KL+S++  RE+I+RD  RFHHFK G CSC DYW
Sbjct: 661 KLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 187/463 (40%), Gaps = 83/463 (17%)

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P   T   +L  CA   DL  G+  H  ++   +    I   AL +MY  C     A  +
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  + ++D ++W A+V GY   G                  L ++ ++  +R+       
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNG------------------LPSSAMEAVVRM------- 108

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
               + +    RPD  T+VS+L ACA+  AL     V  +  +  +   + V  A++D Y
Sbjct: 109 ----QGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAY 164

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
           CKCG VE A+ VF  M  ++  +W AMI G A NG+  +++ +F +M++  +   + + +
Sbjct: 165 CKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVL 224

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
             L AC   G +DE R    ++ ++ G+  N +    ++    +    + A +V   +  
Sbjct: 225 AALQACGELGYLDEVRRVH-ELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGN 283

Query: 514 KPNSIVWGALLGACRVHRDAEMAE--MAAKQILELDPD---------------------- 549
           K   I W A++     +   E AE   A  Q+  + PD                      
Sbjct: 284 KKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARW 343

Query: 550 ----------NEAVYVL--LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
                     ++ VYVL  L ++Y+ C R    R L     DR +        I  N ++
Sbjct: 344 IHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHV--------ITWNAMI 395

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
           H +  G     Q         E+  ++K  G +P+    FL V
Sbjct: 396 HGY--GSHGFGQAAV------ELFEEMKGTGSLPN-ETTFLSV 429



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 139/276 (50%), Gaps = 10/276 (3%)

Query: 16  ETPLISPIETCESM---HQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKV 71
           +  +++ ++ C  +    +++++H   +++GL +N +V N L+ T+   ++ D+  A +V
Sbjct: 220 DASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADL--AAQV 277

Query: 72  FRKIPRPSVCL-WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           F ++      + WN MI G+++ +  ++   ++  M   +VRPD++T   ++     DI+
Sbjct: 278 FNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVA-DIS 336

Query: 131 VEF-GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
                + +H + ++   D  V+V  ALI  Y  CG V +AR +FD +    V+TWNAM  
Sbjct: 337 DPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIH 396

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIV 248
           GY          +LF EM+  G LP   T + VL+AC+    +D G++    + K+  + 
Sbjct: 397 GYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLE 456

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           P +     + D+    G++  A     N+  +  IS
Sbjct: 457 PGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGIS 492


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/658 (38%), Positives = 391/658 (59%), Gaps = 40/658 (6%)

Query: 72   FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
            ++ + + +V  WN++I   +R       +  +  + K  + P   +FP  +K  +    +
Sbjct: 1972 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 2031

Query: 132  EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
              G+  H     FGF++ +FV +ALI  Y  CG++  AR +FD     +VV+W +M +GY
Sbjct: 2032 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGY 2091

Query: 192  KRVKQFDETRKLFG-------EMERKGVLPT-SVTIVLVLSACAKLKDLDVGKRAHRYVK 243
             + +Q D    LF        E+E    +P  SV +V VLSAC+++    + +  H +V 
Sbjct: 2092 VQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVV 2151

Query: 244  ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
            +     ++ + N L D YA CG                               Q  ++++
Sbjct: 2152 KKGFDGSIGVGNTLMDAYAKCG-------------------------------QPLVSKK 2180

Query: 304  YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLG 362
             FD M E+D + W +MI  Y +     EAL +F  M +   +R +  T+ ++L ACA+ G
Sbjct: 2181 VFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAG 2240

Query: 363  ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            AL  G+ +   + K  ++ ++ VG ++IDMYCKCG VE A++ F  M  K+  +WTAM+ 
Sbjct: 2241 ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVA 2300

Query: 423  GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
            G  ++G   ++LD+F +M+RA + P+ +T+V VL+AC+H G+V+EG  +F  M  ++ IE
Sbjct: 2301 GYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIE 2360

Query: 483  PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
            P   HYGCMVDL GRAG LNEA  +IK M MKP+ +VWG+LLGACR+H++ ++ E+AA++
Sbjct: 2361 PGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQK 2420

Query: 543  ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
            + ELDPDN   YVLL N+YA   RW +   +R ++ +R + K PG S++E+ G VH F+ 
Sbjct: 2421 LFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLV 2480

Query: 603  GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
            GDK HP  + IY  L+++T +L+ +GY+P+++ V  DV EE+KE  +  HSEKLA+AFG+
Sbjct: 2481 GDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGV 2540

Query: 663  ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            ++S PG TI I+KNLR+C DCH + KL+S +  R+ +VRD  RFHHFK G CSC DYW
Sbjct: 2541 MNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 140/410 (34%), Positives = 226/410 (55%), Gaps = 9/410 (2%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           +++H  +++ G  +   +   LI  Y   G +  A  +F         TWN +       
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
              ++   L+  M  +G+     T   V+ AC     +D+GK  H  + +     ++ ++
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N L D Y  CG   FAL++F  ++ ++V+SWT +++G I+ G +  AR+ FD++P ++ V
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            WTAMI+GY+R  +  EAL LF+ MQ  NI P+E+T+VS++ AC  +G L LG  +  Y 
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            KN ++  +++G ALIDMY KCG ++ A  VF  M RK   TW +MI  L ++G G ++L
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++FS+M R ++ PD +T++GVL AC H   V EG  YF  MT  +GI P   HY CM +L
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL 403

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             R+ +L+EA +  K +         G+L  +  +  DA   ++A  Q+L
Sbjct: 404 YARSNNLDEAFKSTKEV---------GSLANSPSICFDARAKQVAWTQLL 444



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 188/398 (47%), Gaps = 70/398 (17%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           N  ++P   +  +  L   ++ C++   L+QIH++ I+ GL  +  +  KL+    S  G
Sbjct: 16  NIPLTPRGNIRAKKALFL-LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLY-STHG 73

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            + YA  +F +I  P    WN +I+  +     +  +++Y +M+   +  D +TFPF++K
Sbjct: 74  RIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIK 133

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY----------------------- 160
             T  ++++ GK +H  ++K+GF   VFVQN LI  Y                       
Sbjct: 134 ACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVS 193

Query: 161 --------CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
                     CG++  AR IFD     +VV+W AM +GY R +Q +E  +LF  M+ + +
Sbjct: 194 WTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECKIVPNLILENALTDMYAACGEMGFAL 271
            P   T+V ++ AC ++  L +G+  H Y +K C I   + L  AL DMY+ CG +  A+
Sbjct: 254 FPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC-IEIGVYLGTALIDMYSKCGSIKDAI 312

Query: 272 EIFGNIKNKDVISWTAIVT--GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           E+F  +  K + +W +++T  G    GQ                                
Sbjct: 313 EVFETMPRKSLPTWNSMITSLGVHGLGQ-------------------------------- 340

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
            EAL LF EM+  N++PD  T + +L AC ++  ++ G
Sbjct: 341 -EALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 212/467 (45%), Gaps = 48/467 (10%)

Query: 5    SSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
            SS+     +   +     I++C ++  L   +  H Q    G  T+  V + L+    S+
Sbjct: 2004 SSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMY-SK 2062

Query: 62   KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK--------SDVRP 113
             G +K A  +F +IP  +V  W +MI GY + +   N +L++ D L+        ++V  
Sbjct: 2063 CGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPL 2122

Query: 114  DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
            D+     +L   +R       + +H  V+K GFD S+ V N L+  Y  CG+  +++ +F
Sbjct: 2123 DSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVF 2182

Query: 174  DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDL 232
            D   + D ++WN+M + Y +     E  ++F  M R  GV   +VT+  VL ACA    L
Sbjct: 2183 DWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGAL 2242

Query: 233  DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
              GK  H  V +  +  N+ +  ++ DMY  CG +  A + F  +K K+V SWTA+V GY
Sbjct: 2243 RAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGY 2302

Query: 293  INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
               G                               R +EAL +F +M  + ++P+  T V
Sbjct: 2303 GMHG-------------------------------RAKEALDIFYKMVRAGVKPNYITFV 2331

Query: 353  SILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-L 410
            S+L AC++ G +E G  W      K  ++  I     ++D++ + G + +A  + + M +
Sbjct: 2332 SVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKM 2391

Query: 411  RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            + D   W +++    I  H +  L   +      + PD   Y  +LS
Sbjct: 2392 KPDFVVWGSLLGACRI--HKNVDLGEIAAQKLFELDPDNCGYYVLLS 2436



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 147/333 (44%), Gaps = 20/333 (6%)

Query: 35   IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
            +H   +K G   +  V N L+    ++ G    + KVF  +       WN+MI  Y++  
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMD-AYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSG 2204

Query: 95   SHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
                 + ++  M++   VR +  T   +L       A+  GK +H  V+K   + +V V 
Sbjct: 2205 LSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVG 2264

Query: 154  NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
             ++I  YC CG V+MA+  FD   + +V +W AM +GY    +  E   +F +M R GV 
Sbjct: 2265 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 2324

Query: 214  PTSVTIVLVLSACAKLKDLDVG-----KRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
            P  +T V VL+AC+    ++ G        H+Y     I P +     + D++   G + 
Sbjct: 2325 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKY----DIEPGIEHYGCMVDLFGRAGCLN 2380

Query: 269  FALEIFGNIKNK-DVISWTAIVTGYINRGQVDM----ARQYFDQMPER--DYVLWTAMID 321
             A  +   +K K D + W +++        VD+    A++ F+  P+    YVL + +  
Sbjct: 2381 EAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYA 2440

Query: 322  GYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
               R         L +  Q   ++P  F++V +
Sbjct: 2441 DAGRWADVERMRMLMKNRQL--VKPPGFSLVEL 2471



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 143/332 (43%), Gaps = 47/332 (14%)

Query: 281  DVISWTAIVTGYINRGQVD---MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
            D I++ +I+ G +  G+ D   +A  ++  + + +   W ++I    R     EAL  F 
Sbjct: 1946 DGITYNSILFG-VPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFS 2004

Query: 338  EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
             ++   + P   +    + +C+ L  L  G            + D+FV +ALIDMY KCG
Sbjct: 2005 SLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG 2064

Query: 398  DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI-------IP-DE 449
             ++ A+ +F E+  ++  +WT+MI G   N   D +L +F   L           +P D 
Sbjct: 2065 QLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDS 2124

Query: 450  VTYVGVLSACTHTG--MVDEGREYFA-----DMTIQHGIEPNEAHYGC------------ 490
            V  V VLSAC+      + EG   F      D +I  G    +A+  C            
Sbjct: 2125 VVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDW 2184

Query: 491  -----------MVDLLGRAGHLNEALEV----IKNMPMKPNSIVWGALLGACRVHRDAEM 535
                       M+ +  ++G   EALEV    ++++ ++ N++   A+L AC        
Sbjct: 2185 MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 2244

Query: 536  AEMAAKQILELDPD-NEAVYVLLCNIYAACNR 566
             +    Q++++D + N  V   + ++Y  C R
Sbjct: 2245 GKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGR 2276


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/584 (41%), Positives = 370/584 (63%), Gaps = 12/584 (2%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRP 78
           IS +++C+SM QLKQI +    +GL  +    NKL+ F   S  GD  YA ++F  I  P
Sbjct: 12  ISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDP 71

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           S+ ++N MIK + +  S ++ + ++  + +  V PDNYT+P++LKG      V  G+++H
Sbjct: 72  SLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVH 131

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
             V+K G +   +V N+ +  Y   G V+    +F+     D V+WN M SGY R K+F+
Sbjct: 132 AFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFE 191

Query: 199 ET----RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
           E     R+++ E   K   P   T+V  LSACA L++L++GK  H Y+   ++    I+ 
Sbjct: 192 EAVDVYRRMWTESNEK---PNEATVVSTLSACAVLRNLELGKEIHDYIAS-ELDLTTIMG 247

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           NAL DMY  CG +  A EIF  +  K+V  WT++VTGY+  GQ+D AR  F++ P RD V
Sbjct: 248 NALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIV 307

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
           LWTAMI+GY++ NRF E + LF EMQ   ++PD+F +V++LT CA  GALE G+W+  YI
Sbjct: 308 LWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYI 367

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           D+N++K D  VG ALI+MY KCG +EK+  +F  +  KD  +WT++I GLA+NG   ++L
Sbjct: 368 DENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEAL 427

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++F  M    + PD++T+V VLSAC+H G+V+EGR+ F  M+  + IEPN  HYGC +DL
Sbjct: 428 ELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDL 487

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIV---WGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           LGRAG L EA E++K +P + N I+   +GALL ACR + + +M E  A  + ++   + 
Sbjct: 488 LGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDS 547

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
           +++ LL +IYA+ +RW++ R++R  + D GIKK PG S IE++G
Sbjct: 548 SLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDG 591


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/662 (38%), Positives = 379/662 (57%), Gaps = 16/662 (2%)

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           C    +++ A  +F ++P   V  WN M+ GY++    K    I+ +M   +    + ++
Sbjct: 40  CVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKN----SISW 95

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             +L  + ++  +E  + L     +   D  +   N ++  Y     +  ARGIFD   +
Sbjct: 96  NGMLAAYVQNGRIEDARRL----FESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPE 151

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D V+WN M SGY +  +  E ++LF E   + V     T   ++S   +   LD  +R 
Sbjct: 152 RDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVF----TWTAMVSGYVQNGMLDEARRV 207

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
              + E     N +  NA+   Y  C  M  A E+F  +  ++V SW  ++TGY   G +
Sbjct: 208 FDGMPE----KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDI 263

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
             AR +FD+MP+RD + W A+I GY +     EAL LF EM+    R +  T  S L+ C
Sbjct: 264 AQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTC 323

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A + ALELG+ V   + K  +++  +VGNAL+ MYCKCG+++ A  VF  +  K+  +W 
Sbjct: 324 AEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWN 383

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
            MI G A +G G ++L +F  M +  I+PD+VT VGVLSAC+HTG+VD+G EYF  MT  
Sbjct: 384 TMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQD 443

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           +GI  N  HY CM+DLLGRAG L++A  ++KNMP +P++  WGALLGA R+H + E+ E 
Sbjct: 444 YGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEK 503

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           AAK I E++PDN  +YVLL N+YAA  RW +   +R  + DRG+KK PG S +E+   +H
Sbjct: 504 AAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIH 563

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
            F  GD  HP+   IY  L+E+   +K  GY+     V  DV EE+K   +  HSEKLA+
Sbjct: 564 TFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAV 623

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           AFG+++   G  IR++KNLR+C DCH   K +S +  R +I+RD  RFHHF  G CSC D
Sbjct: 624 AFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGD 683

Query: 719 YW 720
           YW
Sbjct: 684 YW 685


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/622 (40%), Positives = 376/622 (60%), Gaps = 24/622 (3%)

Query: 34  QIHSQTIKLGLLTNPT----------VQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLW 83
           QIH+  +  GLL + +                    S    +++A  +   +P  +   +
Sbjct: 28  QIHAHLLAAGLLQDFSSLLAAAYALSTTATATDARTSPPSPLRHALALLSSLPASA---Y 84

Query: 84  NTMIKGYSRIDS---HKNGVL-----IYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFG 134
           N  I+  S  D    H +GV+     +Y  +L+S   RPD+ TFPFLLK   R     +G
Sbjct: 85  NAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYG 144

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
                HVL+ G DS VFV NA      + G ++ AR +FD S   D+V+WN +  GY R 
Sbjct: 145 DAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRR 204

Query: 195 KQFDETRKLFGEM--ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
               E  +LF  M  E   V P  VT++  +S C +++DL++G+R H +V    +   + 
Sbjct: 205 GNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVR 264

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           L NAL DMY  CG +  A  +F  I+++ V+SWT ++ G+   G +D AR+ FD+MPERD
Sbjct: 265 LMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERD 324

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
              W A++ GY++  + +EAL+LF EMQ +++ PDE T+V++LTAC+ LGALE+G WV  
Sbjct: 325 VFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHR 384

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           YI+K+++   + +G +LIDMY KCG++EKA  +F+E+  K+  TWTAMI GLA +GH ++
Sbjct: 385 YIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANE 444

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +++ F  M+     PDE+T++GVLSAC H G+V EGRE+F+ M  ++ +E    HY CM+
Sbjct: 445 AIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMI 504

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGRAGHL+EA +++  MPM+P+++VWGA+  ACR+  +  + E AA +++E+DP +  
Sbjct: 505 DLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSG 564

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
           +YVLL N+YA  N      ++R M+   G++K PGCS IE+NGVVHEF+  DKSH  +  
Sbjct: 565 IYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHMDSHA 624

Query: 613 IYLKLDEMTSDLKFVGYMPDIS 634
           IY  L E+T  +K    +  IS
Sbjct: 625 IYDCLHEITLQIKHTADLLSIS 646


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 272/739 (36%), Positives = 406/739 (54%), Gaps = 91/739 (12%)

Query: 6    SISPPSTLTQETPLISPIETCESMHQ---------------------LKQIHSQT-IKLG 43
            S SPPS + Q   L+  I+  +   Q                     LK++HS+  I   
Sbjct: 996  SASPPSAVKQLQTLVLSIQKPKFTQQXVVLTENLCGQILDKNPDIKYLKKLHSKICIDHD 1055

Query: 44   LLTNPTVQNKLVTF--CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101
            L +NP++  KL+     C E    ++   +F +IP+ +V  +N MI+ Y     + + +L
Sbjct: 1056 LHSNPSLGIKLMRAYAVCGEPWSTRH---IFDEIPKKNVVFFNVMIRSYVNNHLYSDALL 1112

Query: 102  IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC 161
            ++ +M    + PD+YT+P +LK  +    +  G ++H  V++ G D +VFV N LIS Y 
Sbjct: 1113 VFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYG 1172

Query: 162  LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221
             CG +  A  + D     DVV+WN++ +G  R  QFD+  ++  EME  G+ P + T+  
Sbjct: 1173 KCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMAS 1232

Query: 222  VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
            +L A                      V N  L+N           + F  E+F  + NK 
Sbjct: 1233 LLPA----------------------VTNTCLDN-----------VSFVKEMFMKLANKS 1259

Query: 282  VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
            ++SW  ++  Y+N           + MP                     EA+ +F +M+ 
Sbjct: 1260 LVSWNVMIAVYMN-----------NSMPA--------------------EAVDIFLQMED 1288

Query: 342  SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
              + PD  +I S+L AC +L AL LG  +  Y+ + +++ ++ + NALIDMY KCG +E 
Sbjct: 1289 HAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEY 1348

Query: 402  AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
            A+ VF +M  +D  +WT+MI    +NG G  ++ +FS+M    + PD + +V VLSAC+H
Sbjct: 1349 AREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSH 1408

Query: 462  TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
             G++DEGR YF  MT +  I P   H+ CMVDLLGRAG ++EA   IK MPM+PN  VWG
Sbjct: 1409 AGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWG 1468

Query: 522  ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
            ALL ACRV+ +  +  +AA Q+ +L P+    YVLL NIYA   RW++   +R ++  +G
Sbjct: 1469 ALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKG 1528

Query: 582  IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
            IKK PG S  E++  VH F+AGD+SHPQ+K+IY +LD +   +K  GY+P+      DV 
Sbjct: 1529 IKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVE 1588

Query: 642  EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
            EEDKE  +  HSEKLA+AF ++++ PG  IRI KNLR+C DCH  AKL+S +  RE+ +R
Sbjct: 1589 EEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIR 1648

Query: 702  DKTRFHHFKHGSCSCKDYW 720
            D  RFHHF +G CSC DYW
Sbjct: 1649 DTNRFHHFYNGVCSCGDYW 1667


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/631 (39%), Positives = 369/631 (58%), Gaps = 38/631 (6%)

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSS-VFVQNALISTYCLCGEVDMARGIFDVSY 177
           P L   F     V   K +  H  +  F+++ V   N LI++Y  CG++D A  +F+   
Sbjct: 14  PLLTSSF-----VTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMK 68

Query: 178 KDDVVTWNAMFSGY-KRVKQFDETRKLFGEMERKGVLPTSVTIV---------------- 220
               VTWN++ + + K+   F+  R+LF ++ +   +  ++ +                 
Sbjct: 69  VKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFD 128

Query: 221 -----------LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
                       ++SA A++  +   +R    + E     N +  +A+   Y ACG++  
Sbjct: 129 SMPLKDVASWNTMISALAQVGLMGEARRLFSAMPE----KNCVSWSAMVSGYVACGDLDA 184

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           A+E F     + VI+WTA++TGY+  G+V++A + F +M  R  V W AMI GY+   R 
Sbjct: 185 AVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRA 244

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
            + L LFR M  + ++P+  ++ S+L  C+NL AL+LG+ V   + K  + +D   G +L
Sbjct: 245 EDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSL 304

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           + MY KCGD++ A  +F ++ RKD   W AMI G A +G G K+L +F +M +  + PD 
Sbjct: 305 VSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDW 364

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
           +T+V VL AC H G+VD G +YF  M    GIE    HY CMVDLLGRAG L+EA+++IK
Sbjct: 365 ITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIK 424

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
           +MP KP+  ++G LLGACR+H++  +AE AAK +LELDP     YV L N+YAA NRWD+
Sbjct: 425 SMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDH 484

Query: 570 FRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGY 629
              +R+ + D  + K PG S IE+N VVH F + D+ HP+   I+ KL ++   +K  GY
Sbjct: 485 VASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGY 544

Query: 630 MPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKL 689
           +PD+  V  DVGEE KE+ +  HSEKLA+AFGL+    GV IR+ KNLR+C DCH   K 
Sbjct: 545 VPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKY 604

Query: 690 VSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +S +  RE+IVRD TRFHHFK G CSC+DYW
Sbjct: 605 ISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/454 (21%), Positives = 183/454 (40%), Gaps = 105/454 (23%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           SP+ T   +   K + S T +     N  + +  +       GD+  A +VF  +   S 
Sbjct: 13  SPLLTSSFVTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKST 72

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV-RPDNYTFPFLL------------KGF-- 125
             WN+++  +++    K G   Y   L   + +P+  ++  +L            +GF  
Sbjct: 73  VTWNSILAAFAK----KPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFD 128

Query: 126 ---TRDIA---------VEFGKELHCHVLKFGF-DSSVFVQNALISTYCLCGEVDMARGI 172
               +D+A          + G       L     + +    +A++S Y  CG++D A   
Sbjct: 129 SMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVEC 188

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK---------------------- 210
           F  +    V+TW AM +GY +  + +   +LF EM  +                      
Sbjct: 189 FYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGL 248

Query: 211 ---------GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
                    GV P ++++  VL  C+ L  L +GK+ H+ V +C +  +     +L  MY
Sbjct: 249 RLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMY 308

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           + CG++  A E+F  I  KDV+ W A+++GY   G                         
Sbjct: 309 SKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGA------------------------ 344

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
                   ++AL LF EM+   ++PD  T V++L AC + G ++LG  V+ +   N ++ 
Sbjct: 345 -------GKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLG--VQYF---NTMRR 392

Query: 382 DIFVGN------ALIDMYCKCGDVEKAQRVFREM 409
           D  +         ++D+  + G + +A  + + M
Sbjct: 393 DFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSM 426



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L S +  C ++  L   KQ+H    K  L ++ T    LV+   S+ GD+K A ++F +I
Sbjct: 266 LTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMY-SKCGDLKDAWELFIQI 324

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           PR  V  WN MI GY++  + K  + ++ +M K  ++PD  TF  +L        V+ G
Sbjct: 325 PRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLG 383


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/726 (36%), Positives = 403/726 (55%), Gaps = 52/726 (7%)

Query: 45  LTNP--TVQNKLVTFCCSEKGDMKYACKVFRKIP---RPSVCLWNTMIKGYSRIDSHKNG 99
           + NP    +  L+T  C+  G+++   ++F   P   R SV  +N MI GY+      + 
Sbjct: 74  IPNPDAIARTTLITAYCA-LGNLELGREIFNGTPLYMRDSV-FYNAMITGYAHNGDGHSA 131

Query: 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG-KELHCHVLKFGFDS-SVFVQNALI 157
           + ++  M + D RPD++TF  +L      +  E    ++HC V+K G    S  V NAL+
Sbjct: 132 LELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALL 191

Query: 158 STYC--------LCGEVDMARGIFDVSYKDDVVT-------------------------- 183
           S Y          C  +  AR +FD   K D +T                          
Sbjct: 192 SVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVE 251

Query: 184 -----WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
                WNAM SGY     F E   L  +M   G+    +T   ++SACA +    +GK+ 
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQV 311

Query: 239 HRYVKECKIVPN----LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           H Y+ + ++ PN    L + NAL  +Y    ++  A +IF  +  +++I+W AI++GY+N
Sbjct: 312 HAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVN 371

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G+++ A+ +F++MP ++ +  T MI G  +     E L LF++M+     P +F     
Sbjct: 372 AGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGA 431

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           LTAC+ LGALE G  +   +     ++ + VGNA+I MY KCG VE A+ VF  M   D 
Sbjct: 432 LTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDL 491

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +W +MI  L  +GHG K++++F QML+  + PD +T++ VL+AC+H G+V++GR YF  
Sbjct: 492 VSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNS 551

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           M   +GI P E HY  MVDL  RAG  + A  VI +MP KP + VW ALL  CR+H + +
Sbjct: 552 MLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMD 611

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           +   AA+Q+ +L P N+  YVLL NIYA   RW+   ++R+++ D+ ++K P CS IE+ 
Sbjct: 612 LGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVE 671

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
             VH F+  D  HP+   +Y  L+++  ++K +GY+PD   V  D+  E KE A+  HSE
Sbjct: 672 NKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSE 731

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           KLA+ FG++   PG T+R+ KN+R+C DCH   K +S V  RE+IVRD+ RFHHFK+G C
Sbjct: 732 KLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDC 791

Query: 715 SCKDYW 720
           SC+DYW
Sbjct: 792 SCRDYW 797



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/480 (28%), Positives = 222/480 (46%), Gaps = 61/480 (12%)

Query: 102 IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC 161
           ++  M+ S  +P  +    LL+ + +   + + ++L   +     +     +  LI+ YC
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIP----NPDAIARTTLITAYC 90

Query: 162 LCGEVDMARGIFDVS--YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
             G +++ R IF+ +  Y  D V +NAM +GY          +LF  M R    P   T 
Sbjct: 91  ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTF 150

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI------LENALTDMYA--------ACG 265
             VLSA      L VG         C +V   +      + NAL  +Y         +C 
Sbjct: 151 TSVLSALV----LFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCS 206

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            M  A ++F  +  +D ++WT ++TGY+    ++ AR+ F+ M E     W AMI GY+ 
Sbjct: 207 AMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVH 266

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND--- 382
              F+EALTL R+M+   I+ D+ T  +I++ACAN+G+ ++G+ V  YI KN++  +   
Sbjct: 267 CGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSF 326

Query: 383 -IFVGNALIDMYCK-------------------------------CGDVEKAQRVFREML 410
            + V NALI +YCK                                G +E+A+  F EM 
Sbjct: 327 CLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMP 386

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            K+  T T MI GLA NG GD+ L +F QM      P +  + G L+AC+  G ++ GR+
Sbjct: 387 VKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQ 446

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
             A + +  G E + +    M+ +  + G +  A  V   MP   + + W +++ A   H
Sbjct: 447 LHAQL-VHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQH 504



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 197/469 (42%), Gaps = 80/469 (17%)

Query: 25  TCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWN 84
           +C +M   +++  +  K   LT  T+    V        D+  A +VF  +       WN
Sbjct: 204 SCSAMVSARKLFDEMPKRDELTWTTMITGYV-----RNDDLNGAREVFEAMVENLGAAWN 258

Query: 85  TMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF 144
            MI GY      +  + +   M    ++ D+ T+  ++       + + GK++H ++LK 
Sbjct: 259 AMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKN 318

Query: 145 GFDSS----VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY------KRV 194
             + +    + V NALI+ YC   +VD AR IF      +++TWNA+ SGY      +  
Sbjct: 319 ELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEA 378

Query: 195 KQF-------------------------DETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229
           K F                         DE  KLF +M   G  P        L+AC+ L
Sbjct: 379 KSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVL 438

Query: 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289
             L+ G++ H  +       +L + NA+  MYA CG +  A  +F  + + D++SW +++
Sbjct: 439 GALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMI 498

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
                 G    A + FDQM +                                 + PD  
Sbjct: 499 AALGQHGHGVKAIELFDQMLKE-------------------------------GVFPDRI 527

Query: 350 TIVSILTACANLGALELG-EWVKTYIDKNKVK--NDIFVGNALIDMYCKCGDVEKAQRVF 406
           T +++LTAC++ G +E G  +  + ++   +    D +    ++D++C+ G    A+ V 
Sbjct: 528 TFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYA--RMVDLFCRAGMFSYARIVI 585

Query: 407 REMLRKDKF-TWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYV 453
             M  K     W A++ G  I+G+ D  ++   Q+ +  ++P ++ TYV
Sbjct: 586 DSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFK--LMPQNDGTYV 632


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/543 (43%), Positives = 347/543 (63%), Gaps = 33/543 (6%)

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRA 238
           +V  WN +  GY  +        L+ EM   G V P + T   +L A  K+ D+ +G+  
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H  V        + ++N+L  +YA CG++  A ++                         
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKV------------------------- 178

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                 FD+MPE+D V W ++I+G+    +  EAL L+ EM    I+PD FTIVS+L+AC
Sbjct: 179 ------FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSAC 232

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A +GAL LG+    Y+ K  +  ++   N L+D+Y +CG VE+A+ +F EM+ K+  +WT
Sbjct: 233 AKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 419 AMIVGLAINGHGDKSLDMFSQM-LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           ++IVGLA+NG G +++++F  M  +  ++P E+T+VG+L AC+H GMV EG EYF  M+ 
Sbjct: 293 SLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSE 352

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
           ++ IEP   H+GCMVDLL RAG + +A E I  MPM+PN ++W  LLGAC VH D+++AE
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAE 412

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
           +A  +IL+L+P++   YVLL N+YA+  RW + +++R+ +L  G++K PG S++E+   V
Sbjct: 413 LARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRV 472

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLA 657
           HEF+ GDKSHPQ   IY KL EMT  L+  GY+P IS V++DV EE+KE A+  HSEK+A
Sbjct: 473 HEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIA 532

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           +AF LIS+     IR+VKNL++C DCH   KLVS VY+RE++VRD++RFHHFK+GSCSC+
Sbjct: 533 IAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQ 592

Query: 718 DYW 720
           DYW
Sbjct: 593 DYW 595



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 239/457 (52%), Gaps = 53/457 (11%)

Query: 11  STLTQETPLISP-IETC---------ESMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCC 59
           S  ++ + L+ P +E C          S+ +L+QIH+ +I+ G+ +++  +   L+ +  
Sbjct: 2   SPFSETSVLLLPMVEKCINLLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLV 61

Query: 60  S--EKGDMKYACKVFRKIPRP-SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDN 115
           S      M YA KVF KI +P +V +WNT+I+GY+ I +  + V +Y +M  S  V PD 
Sbjct: 62  SLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDT 121

Query: 116 YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV 175
           +T+PFLLK   +   V  G+ +H  V++ GF S ++VQN+L+  Y  CG+V  A  +FD 
Sbjct: 122 HTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDK 181

Query: 176 SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
             + D+V WN++ +G+    + +E   L+ EM+ KG+ P   TIV +LSACAK+  L +G
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLG 241

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           KR H Y+ +  +  NL   N L D+YA CG +  A  +F  + +K+ +SWT+++ G    
Sbjct: 242 KRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG---- 297

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFREMQT-SNIRPDEFTIVS 353
                                       L VN   +EA+ LF+ M++   + P E T V 
Sbjct: 298 ----------------------------LAVNGLGKEAIELFKNMESKEGLLPCEITFVG 329

Query: 354 ILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LR 411
           IL AC++ G ++ G E+ +   ++ K++  I     ++D+  + G V+KA     +M ++
Sbjct: 330 ILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQ 389

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
            +   W  ++    +  HGD  L   ++M    + P+
Sbjct: 390 PNVVIWRTLLGACTV--HGDSDLAELARMKILQLEPN 424


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/619 (40%), Positives = 369/619 (59%), Gaps = 17/619 (2%)

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           P+  TF  LL    +   ++   ++H  V+     S+  +  +LI  Y        AR +
Sbjct: 72  PNPQTFSLLLNQRPKLSPLQ---QIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARIL 128

Query: 173 FD--VSYKDDVVTWNAMFSGYKRVKQFDETRKLF-------GEMERKGVLPTSVTIVLVL 223
           FD   S    +  WN M   Y +++   E   LF       G M+   V+P   T   V+
Sbjct: 129 FDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQ---VVPDEYTFTFVI 185

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           ++C+    L  G+  H  V +     NL + N++ +M +    M  A ++F  +  +DV 
Sbjct: 186 TSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVF 245

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           SWT+++ GY   G++D A + F+ MP R+ V W  MI G+L   R+ EALT F  M   +
Sbjct: 246 SWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDD 305

Query: 344 -IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
            + P+E  +V +L+ACA+LGAL+ G W+  YIDK  ++    +  ALIDMY KCG ++ A
Sbjct: 306 RVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCA 365

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
            RVF  + ++D  ++T+MI GL+ +G G  +L +F QML  +++P+E+T +GVL+ C+H+
Sbjct: 366 SRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHS 425

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G+V+EG    A+M    GI P   HYGC +DLLGRAG+L  ALEV+K MPM+P+ ++W A
Sbjct: 426 GLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRA 485

Query: 523 LLGACRVHRDAEMAEMAAKQILEL-DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
           LL A R+H +  + E     I +L   D+    VLL N+YA+  RW+   E+R++++DR 
Sbjct: 486 LLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRR 545

Query: 582 IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
            + +PGCS IE+NG+VHEF   D+ HPQ  EI  KL+E+   L  +GY  +  +V  D+ 
Sbjct: 546 SESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLN 605

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
           EE+KE+AV  HSEKLA+AFGL+S+ PG  IRIVKNLR C DCH   K +S VY RE++VR
Sbjct: 606 EEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVR 665

Query: 702 DKTRFHHFKHGSCSCKDYW 720
           D++RFH F  G CSCKD+W
Sbjct: 666 DRSRFHTFIEGDCSCKDFW 684



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/492 (24%), Positives = 219/492 (44%), Gaps = 92/492 (18%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYAC 69
           S L  + P +SP         L+QIH+Q +   L +N ++   L+  + C++        
Sbjct: 78  SLLLNQRPKLSP---------LQQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARIL 128

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD----VRPDNYTFPFLLKGF 125
                 P P + LWN MI+ YS+I + +  + ++L ML  D    V PD YTF F++   
Sbjct: 129 FDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSC 188

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
           +  I++ +G+ +H  V+K GF+S+++V N++I+   +   ++ AR +F+   + DV +W 
Sbjct: 189 SHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWT 248

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKG--------------------------------VL 213
           ++  GY +  + D   +LF  M  +                                 V 
Sbjct: 249 SLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVN 308

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P    +V VLSACA L  LD G   H Y+ +  I  +  +  AL DMYA CG +  A  +
Sbjct: 309 PNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRV 368

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  I  +DV+S+T++++G    G                                 ++AL
Sbjct: 369 FNGICKRDVLSFTSMISGLSYHG-------------------------------LGKDAL 397

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDM 392
            +F +M   N+ P+E TI+ +L  C++ G +E G  +   ++    +   I      ID+
Sbjct: 398 RVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDL 457

Query: 393 YCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
             + G +E+A  V + M +  D   W A++    I+     ++++  Q+         ++
Sbjct: 458 LGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIH----HNVNLGEQI---------IS 504

Query: 452 YVGVLSACTHTG 463
           ++G L +  H G
Sbjct: 505 HIGQLKSSDHNG 516


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/602 (40%), Positives = 370/602 (61%), Gaps = 12/602 (1%)

Query: 46  TNPTVQNKLVTFCCSEKGDMK---YACKVFRKIPRP--SVCLWNTMIKGYS----RIDSH 96
           T+P     +  F  S+    +   +A  +   +P P  S   +N   +  S    R    
Sbjct: 42  TSPFSDRLVAAFALSDPASPRPLLHALAILASLPSPPDSASPYNAAFRALSLCPHRHLVD 101

Query: 97  KNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA 155
           ++ + +Y  +L  S  RPD+ TFPFLLK   R     +G  +  HV K GF + VFV NA
Sbjct: 102 RHCLPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNA 161

Query: 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM--ERKGVL 213
            +  + + G + +AR +FD S   DVV+WN +  GY R     E  +LF  +  + K V 
Sbjct: 162 GVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVR 221

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  VT++  +S CA++ DL++GKR H +V    +   + L NA+ DMY  CG +  A  +
Sbjct: 222 PDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSV 281

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  I NK V+SWT ++ G+   G ++ AR  FD+MPERD   W A++ GY++  + +EA+
Sbjct: 282 FERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAI 341

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LF EMQ S + P+E T+V++L+AC+ LGALE+G WV  YID++++   + +G +L+DMY
Sbjct: 342 ALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMY 401

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KCG+++KA  +F+E+  K+  TWTAMI GLA +GH D++++ F +M+   + PDE+T++
Sbjct: 402 AKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFI 461

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
           GVLSAC H G+V EGR++F+ M  ++ +E    HY CM+DLLGRAGHL+EA +++  MPM
Sbjct: 462 GVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPM 521

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
            P+++VWGAL  ACR+H +  + E AA +++ELDP +  +YVLL N+YA  N      ++
Sbjct: 522 DPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKV 581

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R M+   G++K PGCS IE+NGVVHEF+  DKSH  T  IY  L  +T  +K    + DI
Sbjct: 582 RVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTIAIYDCLHGITLQMKHTANLIDI 641

Query: 634 SE 635
           SE
Sbjct: 642 SE 643


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/709 (35%), Positives = 390/709 (55%), Gaps = 49/709 (6%)

Query: 60  SEKGDMKYACKVFRKIP---RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
           S  GD+K + K+F   P   R SV  +N MI  YS        + ++ DM + + RPDNY
Sbjct: 90  SAAGDLKLSRKIFSDTPLGMRDSV-FYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNY 148

Query: 117 TFPFLLKGFTRDIAVE-FGKELHCHVLKFGFDSSVFVQNALISTYCLC------------ 163
           TF  +L         E   ++LHC V+K G      V NALIS+Y  C            
Sbjct: 149 TFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLM 208

Query: 164 ----------------------------GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
                                        ++D A+   + + K   V WNAM SGY    
Sbjct: 209 AEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRG 268

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN----L 251
            + E  ++F +M    +     T   V+S CA      +GK  H Y  +    P     +
Sbjct: 269 LYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAM 328

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + NAL   Y  CG++  A EIF  +  +D++SW  I++GY+N   +D A+ +F++MPE+
Sbjct: 329 PVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEK 388

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           + + W  MI G  ++    EAL  F  M+     P ++     + +C+ LG+L+ G  + 
Sbjct: 389 NILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLH 448

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
             + +   ++ +  GNALI MY +CG V+ A  +F  M   D  +W AMI  L  +G G 
Sbjct: 449 AQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGT 508

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           +++++F +ML+  I+PD ++++ V+SAC+H G+V EGR+YF  M   +G+ P+E HY  +
Sbjct: 509 QAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARI 568

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           +DLL RAG  +EA EV+++MP +P + +W ALL  CR+H + ++   AA+++ EL P ++
Sbjct: 569 IDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHD 628

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL N+YA   +W++  ++R+++ DRG+KK PGCS IE+   VH F+ GD +HP+ +
Sbjct: 629 GTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVR 688

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           +IY  L+++  +++ +GY+PD   V  DV  + KE  +  HSEKLA+A+G +    G T+
Sbjct: 689 QIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGATV 748

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+ KNLR+C DCH   K +S V  RE++VRD  RFHHF+ G CSC DYW
Sbjct: 749 RVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 233/531 (43%), Gaps = 75/531 (14%)

Query: 102 IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC 161
           ++  M+ S  +P  +    L+  +++   + + + L   + +      +  +  LI+ Y 
Sbjct: 35  VHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQ----PDIVARTTLIAAYS 90

Query: 162 LCGEVDMARGIFDVSY--KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
             G++ ++R IF  +     D V +NAM + Y          +LF +M+R    P + T 
Sbjct: 91  AAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTF 150

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPN-----LILENALTDMYAACGE-------- 266
             VL A A + +    K  H     C +V +       + NAL   Y  C          
Sbjct: 151 TSVLGALALVAE----KEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSS 206

Query: 267 -MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            M  A ++F  + N+D +SWT I+TGY+    +D A+++ +   ++  V W AMI GY  
Sbjct: 207 LMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAH 266

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND--- 382
              + EA  +FR+M  S I+ DEFT  S+++ CAN G   LG+ +  Y  K  V N    
Sbjct: 267 RGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKT-VANPAPD 325

Query: 383 --IFVGNALIDMYCKCGDVEKAQRV-------------------------------FREM 409
             + V NALI  Y KCG V+ AQ +                               F EM
Sbjct: 326 VAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEM 385

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
             K+  +W  MI GLA  G  +++L  F++M      P +  + G + +C+  G +  GR
Sbjct: 386 PEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGR 445

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529
           +  A + +++G E + +    ++ +  R G ++ A  +  NMP   ++I W A++ A   
Sbjct: 446 QLHAQV-VRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPC-VDAISWNAMIAALGQ 503

Query: 530 HRDAEMA-----EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           H     A     EM  + IL   PD     +    + +AC+     +E R+
Sbjct: 504 HGQGTQAIELFEEMLKEGIL---PDR----ISFLTVISACSHAGLVKEGRK 547



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 150/362 (41%), Gaps = 52/362 (14%)

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
           + +  H ++      P   + N L D+Y+   ++ +A  +F  I   D+++ T ++  Y 
Sbjct: 31  LARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYS 90

Query: 294 NRGQVDMARQYFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
             G + ++R+ F   P   RD V + AMI  Y   +    A+ LF +MQ  N RPD +T 
Sbjct: 91  AAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTF 150

Query: 352 VSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGD---------VEK 401
            S+L A A +   E   + +   + K+       V NALI  Y KC           + +
Sbjct: 151 TSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAE 210

Query: 402 AQRVFREMLRKDKFTWTAMIVGLA--------------------------INGHGDKSL- 434
           A+++F EM  +D+ +WT +I G                            I+G+  + L 
Sbjct: 211 ARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLY 270

Query: 435 ----DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE---YFADMTIQHGIEPNEAH 487
               +MF +M+ + I  DE T+  V+S C + G    G+E   YF         +     
Sbjct: 271 LEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPV 330

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA-----CRVHRDAEMAEMAAKQ 542
              ++    + G ++ A E+   MP + + + W  +L       C     +   EM  K 
Sbjct: 331 NNALITFYWKCGKVDIAQEIFNKMPER-DLVSWNIILSGYVNVRCMDEAKSFFNEMPEKN 389

Query: 543 IL 544
           IL
Sbjct: 390 IL 391


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/591 (39%), Positives = 368/591 (62%), Gaps = 5/591 (0%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCL--CGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H  ++  G  ++       ++T  L     +D A  + + +    + T N+M   Y 
Sbjct: 26  KQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNNNPTLFTLNSMIRAYS 85

Query: 193 RVKQFDETRKLFGEM---ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           +     ++   +  +       + P + T   ++  CA+L+    G   H  V +     
Sbjct: 86  KSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFEL 145

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           +  ++  L  MYA  G +     +F      D+++ TA++      G +D AR+ FD+MP
Sbjct: 146 DPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMP 205

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ERD+V W AMI GY +  R REAL +F  MQ   ++ +E ++V +L+AC +L  L+ G W
Sbjct: 206 ERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRW 265

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           V  Y+++ KV+  + +G AL+DMY KCG+V++A +VF  M  ++ +TW++ I GLA+NG 
Sbjct: 266 VHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGF 325

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
           G++SLD+F+ M R  + P+ +T++ VL  C+  G+V+EGR++F  M   +GI P   HYG
Sbjct: 326 GEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYG 385

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
            MVD+ GRAG L EAL  I +MPM+P+   W ALL ACR++++ E+ E+A ++I+EL+  
Sbjct: 386 LMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDK 445

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           N+  YVLL NIYA    W++   LRQ +  +G+KK PGCS+IE++G VHEF+ GDKSHP+
Sbjct: 446 NDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPR 505

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
             EI +KL+E++  L+  GY+ + + V  D+ EE+KE A+ +HSEK+A+AFGLIS    V
Sbjct: 506 YDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVV 565

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            IR+V NLR+C DCH +AK++S +++RE+IVRD+ RFHHFK G CSCKDYW
Sbjct: 566 PIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 213/447 (47%), Gaps = 80/447 (17%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIP 76
           P IS + +C ++ ++KQIH+Q +  G+L NP    + V T       ++ YA K+     
Sbjct: 11  PTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNN 70

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD---VRPDNYTFPFLLKGFTRDIAVEF 133
            P++   N+MI+ YS+  +       Y ++L S+   + PDNYTF FL++   +  A   
Sbjct: 71  NPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVT 130

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTY----CL--------------------------- 162
           G  +H  V+K GF+    VQ  L+  Y    CL                           
Sbjct: 131 GLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAK 190

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
           CG++D AR +FD   + D VTWNAM +GY +  +  E   +F  M+ +GV    V++VLV
Sbjct: 191 CGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLV 250

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           LSAC  L+ LD G+  H YV+  K+   + L  AL DMYA CG +  A+++F  +K ++V
Sbjct: 251 LSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNV 310

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFREMQT 341
            +W++ + G                                L +N F  E+L LF +M+ 
Sbjct: 311 YTWSSAIGG--------------------------------LAMNGFGEESLDLFNDMKR 338

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL------IDMYCK 395
             ++P+  T +S+L  C+ +G +E G   + + D   ++N   +G  L      +DMY +
Sbjct: 339 EGVQPNGITFISVLKGCSVVGLVEEG---RKHFD--SMRNVYGIGPQLEHYGLMVDMYGR 393

Query: 396 CGDVEKAQRVFREM-LRKDKFTWTAMI 421
            G +++A      M +R     W+A++
Sbjct: 394 AGRLKEALNFINSMPMRPHVGAWSALL 420



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 140/292 (47%), Gaps = 5/292 (1%)

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           C++ GD+ +A K+F ++P      WN MI GY++    +  + ++  M    V+ +  + 
Sbjct: 188 CAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSM 247

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             +L   T    ++ G+ +H +V ++    +V +  AL+  Y  CG VD A  +F    +
Sbjct: 248 VLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKE 307

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            +V TW++   G       +E+  LF +M+R+GV P  +T + VL  C+ +  ++ G++ 
Sbjct: 308 RNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKH 367

Query: 239 HRYVKEC-KIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTG---YI 293
              ++    I P L     + DMY   G +  AL    ++  +  V +W+A++     Y 
Sbjct: 368 FDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYK 427

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           N+   ++A++   ++ +++   +  + + Y     +    +L + M+   ++
Sbjct: 428 NKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVK 479


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/593 (40%), Positives = 365/593 (61%), Gaps = 8/593 (1%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM---ARGIFDVSYKDDVVTWNAMFSGY 191
           K++H HVL+ G D S ++   LI T    G V M   AR + +     +   W A+  GY
Sbjct: 66  KQIHGHVLRKGLDQSCYILTKLIRTLTKLG-VPMDPYARRVIEPVQFRNPFLWTAVIRGY 124

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
               +FDE   ++G M ++ + P S T   +L AC  +KDL++G++ H      +    +
Sbjct: 125 AIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFV 184

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + N + DMY  C  +  A ++F  +  +DVISWT ++  Y   G ++ A + F+ +P +
Sbjct: 185 YVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTK 244

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D V WTAM+ G+ +  + +EAL  F  M+ S IR DE T+   ++ACA LGA +  +   
Sbjct: 245 DMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAV 304

Query: 372 TYIDKN--KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
               K+     + + +G+ALIDMY KCG+VE+A  VF  M  K+ FT+++MI+GLA +G 
Sbjct: 305 QIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGR 364

Query: 430 GDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
             ++L +F  M+ +  I P+ VT+VG L AC+H+G+VD+GR+ F  M    G++P   HY
Sbjct: 365 AQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHY 424

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
            CMVDLLGR G L EALE+IK M ++P+  VWGALLGACR+H + E+AE+AA+ + EL+P
Sbjct: 425 TCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEP 484

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS-MIEMNGVVHEFVAGDKSH 607
           D    Y+LL N+YA+   W     +R++I ++G+KKTP  S +++ NG +H+F  G+ +H
Sbjct: 485 DIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNH 544

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P + +I  KL+E+   L  +GY PD+S V  DV +  K   + QH+EKLA+AF L+++  
Sbjct: 545 PMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNR 604

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             TI I+KNLRMC+DCH+  +L S V  + +I+RD  RFHHF+ G CSC D+W
Sbjct: 605 DSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 116/484 (23%), Positives = 208/484 (42%), Gaps = 88/484 (18%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM-KYACKVFRKI 75
           + LIS ++ C +++Q+KQIH   ++ GL  +  +  KL+         M  YA +V   +
Sbjct: 50  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPV 109

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              +  LW  +I+GY+        + +Y  M K ++ P ++TF  LLK       +  G+
Sbjct: 110 QFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGR 169

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           + H    +      V+V N +I  Y  C  +D AR +FD   + DV++W  + + Y RV 
Sbjct: 170 QFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVG 229

Query: 196 QFD-------------------------------ETRKLFGEMERKGVLPTSVTIVLVLS 224
             +                               E  + F  ME+ G+    VT+   +S
Sbjct: 230 NMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYIS 289

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPN--LILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           ACA+L       RA +  ++    P+  +++ +AL DMY+ CG +  A+ +F ++ NK+V
Sbjct: 290 ACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNV 349

Query: 283 ISWTAIVTGYINRGQ------------------------------------VDMARQYFD 306
            ++++++ G    G+                                    VD  RQ FD
Sbjct: 350 FTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFD 409

Query: 307 QM-------PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
            M       P RD+  +T M+D   R  R +EAL L + M   ++ P      ++L AC 
Sbjct: 410 SMYQTFGVQPTRDH--YTCMVDLLGRTGRLQEALELIKTM---SVEPHGGVWGALLGACR 464

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALI--DMYCKCGDVEKAQRVFREMLRKDKFTW 417
                E+ E    ++   +++ DI +GN ++  ++Y   GD     RV R+++++     
Sbjct: 465 IHNNPEIAEIAAEHL--FELEPDI-IGNYILLSNVYASAGDWGGVLRV-RKLIKEKGLKK 520

Query: 418 TAMI 421
           T  +
Sbjct: 521 TPAV 524


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/675 (37%), Positives = 390/675 (57%), Gaps = 61/675 (9%)

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P  S   W   ++  +R +  +  +  Y++M  S  RPDN+ FP +LK  +    ++ G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 136 ELHCHVLKFGFDSS---------------------VFVQNALISTYCLCGEVDMARGIFD 174
           ++H   +KFG+ SS                      F  NAL++ Y   G VD ++ +F+
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
                D+V+WN M S + +  +F E    F  M  +GV    VTI  VL AC+ L+ LDV
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 235 GKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
           GK  H YV +   ++ N  + +AL DMY  C ++     +F +I  + +  W A+++GY 
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGY- 291

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIV 352
                  AR   D+                       +AL LF EM + + + P+  T+ 
Sbjct: 292 -------ARNGLDE-----------------------KALILFIEMIKVAGLLPNTTTMA 321

Query: 353 SILTACA-NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           S++ AC  +L A+  G+ +  Y  +N + +DI VG+AL+DMY KCG +  ++RVF EM  
Sbjct: 322 SVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPN 381

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-----IIPDEVTYVGVLSACTHTGMVD 466
           K+  TW  +I+   ++G G+++L++F  M+  +       P+EVT++ V +AC+H+G++ 
Sbjct: 382 KNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLIS 441

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLG 525
           EG   F  M   HG+EP   HY C+VDLLGRAG L EA E++  MP + + +  W +LLG
Sbjct: 442 EGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLG 501

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           ACR+H++ E+ E+AAK +L L+P+  + YVLL NIY++   W+   E+R+ +   G+KK 
Sbjct: 502 ACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKE 561

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
           PGCS IE    VH+F+AGD SHPQ+++++  L+ ++  ++  GY+PD S V  +V E++K
Sbjct: 562 PGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEK 621

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           E  +  HSEKLA+AFG++++ PG TIR+ KNLR+C DCH   K +S + +RE+IVRD  R
Sbjct: 622 ENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRR 681

Query: 706 FHHFKHGSCSCKDYW 720
           FHHFK G+CSC DYW
Sbjct: 682 FHHFKEGTCSCGDYW 696



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 209/510 (40%), Gaps = 99/510 (19%)

Query: 33  KQIHSQTIKLGLLTNP-TVQNKLVTFC--CSEKGDMKY-----------------ACKVF 72
           +QIH+  +K G  ++  TV N LV     C   GD  +                 +  +F
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF 171

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
                  +  WNTMI  +S+ D     +  +  M+   V  D  T   +L   +    ++
Sbjct: 172 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 231

Query: 133 FGKELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
            GKE+H +VL+      + FV +AL+  YC C +V+  R +FD      +  WNAM SGY
Sbjct: 232 VGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGY 291

Query: 192 KRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACA-KLKDLDVGKRAHRYVKECKIVP 249
            R    ++   LF EM +  G+LP + T+  V+ AC   L  +  GK  H Y     +  
Sbjct: 292 ARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLAS 351

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ + +AL DMYA CG +  +  +F  + NK+VI+W  ++      G+ + A + F  M 
Sbjct: 352 DITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNM- 410

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
                             R  EA            +P+E T +++  AC++ G +  G  
Sbjct: 411 -------------VAEAGRGGEA------------KPNEVTFITVFAACSHSGLISEGLN 445

Query: 370 VKTYIDKN---KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           +   +  +   +  +D +    ++D+  + G +E+A  +   M                 
Sbjct: 446 LFYRMKHDHGVEPTSDHYA--CVVDLLGRAGQLEEAYELVNTM----------------- 486

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVG----VLSACTHTGMVDEGREYFADMTIQHGIE 482
                               P E   VG    +L AC     V+ G    A   + H +E
Sbjct: 487 --------------------PAEFDKVGAWSSLLGACRIHQNVELGE--VAAKNLLH-LE 523

Query: 483 PNEA-HYGCMVDLLGRAGHLNEALEVIKNM 511
           PN A HY  + ++   AG  N+A+EV KNM
Sbjct: 524 PNVASHYVLLSNIYSSAGLWNKAMEVRKNM 553


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/734 (34%), Positives = 409/734 (55%), Gaps = 41/734 (5%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS--EKGDMKYACKVFRKIPRPSVCLWNT 85
           S+ Q +Q H+  ++L L ++  +   L++F  +       + +  +   +P P++  +++
Sbjct: 15  SLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSS 74

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           +I  ++R     + +  +  +    + PD +  P  +K      A++ G++LH      G
Sbjct: 75  LIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASG 134

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           F +   V ++L   Y  C  +  AR +FD     DVV W+AM +GY R+   +E ++LFG
Sbjct: 135 FLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFG 194

Query: 206 EMERKGVLPTSV-----------------------------------TIVLVLSACAKLK 230
           EM   GV P  V                                   T+  VL A   L+
Sbjct: 195 EMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLE 254

Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
           D+ VG + H YV +  +  +  + +A+ DMY  CG +     +F  ++  ++ S  A +T
Sbjct: 255 DVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLT 314

Query: 291 GYINRGQVDMARQYF----DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
           G    G VD A + F    DQ  E + V WT++I    +  +  EAL LFR+MQ   + P
Sbjct: 315 GLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEP 374

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           +  TI S++ AC N+ AL  G+ +  +  +  + +D++VG+ALIDMY KCG ++ A+R F
Sbjct: 375 NAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCF 434

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
            +M   +  +W A++ G A++G   ++++MF  ML++   PD VT+  VLSAC   G+ +
Sbjct: 435 DKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTE 494

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           EG   +  M+ +HGIEP   HY C+V LL R G L EA  +IK MP +P++ VWGALL +
Sbjct: 495 EGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSS 554

Query: 527 CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTP 586
           CRVH +  + E+AA+++  L+P N   Y+LL NIYA+   WD    +R+++  +G++K P
Sbjct: 555 CRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNP 614

Query: 587 GCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKE 646
           G S IE+   VH  +AGD+SHPQ K+I  KLD++   +K  GY+P  + V  DV E+DKE
Sbjct: 615 GYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKE 674

Query: 647 RAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRF 706
           + +  HSEKLA+  GL+++ PG  ++++KNLR+C DCH + K++S +  RE+ VRD  RF
Sbjct: 675 QILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRF 734

Query: 707 HHFKHGSCSCKDYW 720
           HHFK G CSC D+W
Sbjct: 735 HHFKDGVCSCGDFW 748


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/675 (37%), Positives = 375/675 (55%), Gaps = 78/675 (11%)

Query: 46  TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLD 105
           +N    N+++T      GD+  A +VF  +   +   WN+M+ GYS   + +  + +   
Sbjct: 3   SNVISSNRVITNHI-RSGDLNSALRVFESMTVKTTVTWNSMLAGYS---NRRGKIKVARQ 58

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           +      PD                                   +F  N +++ Y    +
Sbjct: 59  LFDRIPEPD-----------------------------------IFSYNIMLACYLHNAD 83

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           V+ AR  FD     D  +WN M SG+ +    D+ R+LF       V+P           
Sbjct: 84  VESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL------VMP----------- 126

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
                                 V N +  NA+   Y   G++  A ++F     + V++W
Sbjct: 127 ----------------------VRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAW 164

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           TA++TG++  G++++A +YF++MP ++ V W AMI GY+   +    L LF+ M  S  R
Sbjct: 165 TAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFR 224

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           P+  ++ S+L  C+NL AL+LG+ V   I K+ V  +I  G +L+ MYCKCGD+E A ++
Sbjct: 225 PNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKL 284

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F  M +KD  TW AMI G A +G G+K+L +F +M    + PD +T+V VLSAC H G V
Sbjct: 285 FLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFV 344

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           D G EYF  M   +G+E    HY C+VDLLGR G L EA+++IK MP KP+S ++G LLG
Sbjct: 345 DLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLG 404

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           ACR+H++ E+AE AAK +L LDP++ A YV L N+YAA NRWD+   +R+ + D  + KT
Sbjct: 405 ACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKT 464

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
           PG S IE+  VVHEF +GD+ HP+   I+ KL+E+   ++  GY+PD+     DVGEE K
Sbjct: 465 PGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQK 524

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           ++ + +HSEKLA+A+GLI    G  IR+ KNLR+C DCH   K +S +  R +IVRD TR
Sbjct: 525 KQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTR 584

Query: 706 FHHFKHGSCSCKDYW 720
           FHHF+ G CSC DYW
Sbjct: 585 FHHFRQGECSCGDYW 599



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 149/377 (39%), Gaps = 81/377 (21%)

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
           K+ +VIS   ++T +I  G ++ A + F+ M  +  V W +M+ GY   NR R  + + R
Sbjct: 1   KSSNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGY--SNR-RGKIKVAR 57

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK-----NDIFVG------ 386
           ++      PD F+  +I+ AC    A    E  + + D+  VK     N +  G      
Sbjct: 58  QLFDRIPEPDIFS-YNIMLACYLHNADV--ESARLFFDQMPVKDTASWNTMISGFSQNGM 114

Query: 387 -------------------NALIDMYCKCGD----------------------------- 398
                              NA+I  Y + GD                             
Sbjct: 115 MDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKF 174

Query: 399 --VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
             +E A++ F EM  K+  TW AMI G   N   +  L +F +M+ +   P+  +   VL
Sbjct: 175 GKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVL 234

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
             C++   +  G++    +  +  +  N      ++ +  + G L +A ++   MP K +
Sbjct: 235 LGCSNLSALKLGKQVH-QLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQK-D 292

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNRWDNFREL- 573
            + W A++     H   E A     ++ +  + PD    ++    + +ACN    F +L 
Sbjct: 293 VVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPD----WITFVAVLSACNH-AGFVDLG 347

Query: 574 ----RQMILDRGIKKTP 586
                 M+ D G++  P
Sbjct: 348 IEYFNSMVRDYGVEAKP 364


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/688 (38%), Positives = 393/688 (57%), Gaps = 33/688 (4%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           +IHS     GL ++  V   LV F  ++ G +  A ++F  +    V  WN MI G S  
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFY-AKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
               + V + + M +  + P++ T   +L       A+  GK LH + ++  FD+ V V 
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
             L+  Y  C  +  AR IFDV    + V+W+AM  GY       E  +LF +M  K  +
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAM 308

Query: 214 -PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            PT VT+  VL ACAKL DL  G++ H Y+ +   V +++L N L  MYA CG       
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCG------- 361

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
                                    +D A ++FD+M  +D V ++A++ G ++      A
Sbjct: 362 ------------------------VIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVA 397

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L++FR MQ S I PD  T++ +L AC++L AL+ G     Y+       D  + NALIDM
Sbjct: 398 LSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDM 457

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG +  A+ VF  M R D  +W AMI+G  I+G G ++L +F  +L   + PD++T+
Sbjct: 458 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 517

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           + +LS+C+H+G+V EGR +F  M+    I P   H  CMVD+LGRAG ++EA   I+NMP
Sbjct: 518 ICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMP 577

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            +P+  +W ALL ACR+H++ E+ E  +K+I  L P++   +VLL NIY+A  RWD+   
Sbjct: 578 FEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAH 637

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R    D G+KK PGCS IE+NG+VH FV GD+SH Q  +I  KL+E+  ++K +GY  +
Sbjct: 638 IRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAE 697

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            S VF DV EE+KE+ +  HSEKLA+AFG+++   G  I + KNLR+C DCH   K +++
Sbjct: 698 CSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTL 757

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  RE+ VRD  RFHHFK+G+C+C D+W
Sbjct: 758 ITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 195/432 (45%), Gaps = 36/432 (8%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           LL+   +  ++   K++H H LK   ++   V + L   Y  C +V +AR +FD      
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           V+ WN +   Y     FD    L+  M   GV P   T   VL AC+ L  ++ G   H 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           + K   +  ++ +  AL D YA CG +  A  +F ++ ++DV++W A++ G    G  D 
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD- 192

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
                                         +A+ L  +MQ   I P+  TIV +L     
Sbjct: 193 ------------------------------DAVQLIMQMQEEGICPNSSTIVGVLPTVGE 222

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
             AL  G+ +  Y  +    N + VG  L+DMY KC  +  A+++F  M  +++ +W+AM
Sbjct: 223 AKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAM 282

Query: 421 IVGLAINGHGDKSLDMFSQM-LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           I G   +    ++L++F QM L+ ++ P  VT   VL AC     +  GR+      I+ 
Sbjct: 283 IGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHC-YIIKL 341

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           G   +      ++ +  + G +++A+     M  K +S+ + A++  C  + +A +A   
Sbjct: 342 GSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPK-DSVSFSAIVSGCVQNGNAAVALSI 400

Query: 540 AK--QILELDPD 549
            +  Q+  +DPD
Sbjct: 401 FRMMQLSGIDPD 412



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 17/308 (5%)

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
           N  N D      +   Y++  QV +AR+ FD++P    +LW  +I  Y     F  A+ L
Sbjct: 37  NTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDL 96

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
           +  M    +RP+++T   +L AC+ L A+E G  + ++     +++D+FV  AL+D Y K
Sbjct: 97  YHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAK 156

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG + +AQR+F  M  +D   W AMI G ++ G  D ++ +  QM    I P+  T VGV
Sbjct: 157 CGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGV 216

Query: 456 LSACTHTGMVDEGRE---YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           L        +  G+    Y    +  +G+         ++D+  +   L  A ++   M 
Sbjct: 217 LPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG----LLDMYAKCQCLLYARKIFDVMG 272

Query: 513 MKPNSIVWGALLGACRVHRDA--EMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNRWD 568
           ++ N + W A++G   V  D   E  E+  + IL+  +DP      V L ++  AC +  
Sbjct: 273 VR-NEVSWSAMIGG-YVASDCMKEALELFDQMILKDAMDPTP----VTLGSVLRACAKLT 326

Query: 569 NFRELRQM 576
           +    R++
Sbjct: 327 DLSRGRKL 334


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/703 (36%), Positives = 399/703 (56%), Gaps = 33/703 (4%)

Query: 19   LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            +++ +   + +   KQ+H   +K GL ++ +V N LV    S+ G   +A +VF  +   
Sbjct: 910  VLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMY-SKMGCAYFAREVFNDMKHL 968

Query: 79   SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI-AVEFGKEL 137
             +  WN+MI   ++    +  V +++D+L   ++PD++T   +L+  +  I  +   +++
Sbjct: 969  DLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQI 1028

Query: 138  HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
            H H LK G  +  FV   LI  Y   G+++ A  +F      D+  WNAM  GY      
Sbjct: 1029 HVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDG 1088

Query: 198  DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
             +  +LF  + + G     +T+     AC  L  LD GK+ H +  +     +L + + +
Sbjct: 1089 KKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGI 1148

Query: 258  TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
             DMY  CG+M                         +N G V      F+ +   D V WT
Sbjct: 1149 LDMYIKCGDM-------------------------VNAGIV------FNYISAPDDVAWT 1177

Query: 318  AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
            +MI G +      +AL ++  M+ S + PDE+T  +++ A + + ALE G  +   + K 
Sbjct: 1178 SMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKL 1237

Query: 378  KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
               +D FVG +L+DMY KCG++E A R+F++M  ++   W AM+VGLA +G+ ++++++F
Sbjct: 1238 DCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLF 1297

Query: 438  SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
              M    I PD V+++G+LSAC+H G+  E  EY   M   +GIEP   HY C+VD LGR
Sbjct: 1298 KSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGR 1357

Query: 498  AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
            AG + EA +VI+ MP K ++ +  ALLGACR+  D E  +  A ++  L+P + A YVLL
Sbjct: 1358 AGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLL 1417

Query: 558  CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
             NIYAA NRWD+  + R+M+  + +KK PG S I++  ++H FV  D+SHPQ   IY K+
Sbjct: 1418 SNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKV 1477

Query: 618  DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
            +EM   ++  GY+PD   V LDV +E+KER++Y HSEKLA+A+GLIS+    TIR++KNL
Sbjct: 1478 EEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNL 1537

Query: 678  RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            R+C DCH   K +S V++RE+++RD  RFHHF+ G CSC DYW
Sbjct: 1538 RVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 135/560 (24%), Positives = 245/560 (43%), Gaps = 59/560 (10%)

Query: 23   IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
            + T  S H L   K  H++ +  G   +  + N L+T   S+ G +  A +VF   P   
Sbjct: 628  LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMY-SKCGSLSSARQVFDTTPERD 686

Query: 80   VCLWNTMIKGYS-RIDSH----KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
            +  WN ++  Y+  +DS+    + G+ ++  +  S       T   +LK       +   
Sbjct: 687  LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 135  KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
            + +H + +K G +  VFV  AL++ Y  CG +  AR +FD   + DVV WN M  GY ++
Sbjct: 747  EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806

Query: 195  KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK----RAHRYVKECKIV-- 248
                E  +LF E  R G+ P   ++ L+L+  +++ + D GK    +   Y  +  +   
Sbjct: 807  GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEV-NWDEGKWLADQVQAYAAKLSLSDD 865

Query: 249  -PNLILENALTDMYAACGEMGFALEIFGNIK----------------------------- 278
             P++   N         G+   A+E F N+                              
Sbjct: 866  NPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQ 925

Query: 279  ----------NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
                      + DV    ++V  Y   G    AR+ F+ M   D + W +MI    + + 
Sbjct: 926  VHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSL 985

Query: 329  FREALTLFREMQTSNIRPDEFTIVSILTACANL-GALELGEWVKTYIDKNKVKNDIFVGN 387
              E++ LF ++    ++PD FT+ S+L AC++L   L +   +  +  K     D FV  
Sbjct: 986  EEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVAT 1045

Query: 388  ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
             LID+Y K G +E+A+ +F+     D   W AM+ G  I   G K+L++FS + ++    
Sbjct: 1046 TLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKS 1105

Query: 448  DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
            D++T      AC    ++D+G++  A   I+ G + +      ++D+  + G +  A  +
Sbjct: 1106 DQITLATAAKACGCLVLLDQGKQIHA-HAIKAGFDSDLHVNSGILDMYIKCGDMVNA-GI 1163

Query: 508  IKNMPMKPNSIVWGALLGAC 527
            + N    P+ + W +++  C
Sbjct: 1164 VFNYISAPDDVAWTSMISGC 1183



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 17/224 (7%)

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           L LG+     I  +    D F+ N L+ MY KCG +  A++VF     +D  TW A++  
Sbjct: 637 LLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGA 696

Query: 424 LAI-----NGHGDKSLDMFSQMLRASI-IPDEVTYVGVLSACTHTG--MVDEGREYFADM 475
            A      +G+  + L +F ++LRAS+     +T   VL  C ++G     EG   +A  
Sbjct: 697 YAASVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYA-- 753

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAE 534
            I+ G+E +    G +V++  + G + +A  +   M  + + ++W  +L G  ++  + E
Sbjct: 754 -IKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER-DVVLWNMMLKGYVQLGLEKE 811

Query: 535 MAEMAAK-QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
             ++ ++     L PD  +V ++L  +      WD  + L   +
Sbjct: 812 AFQLFSEFHRSGLRPDEFSVQLILNGVSEV--NWDEGKWLADQV 853


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/551 (42%), Positives = 346/551 (62%), Gaps = 3/551 (0%)

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG--VLPTSVTIVLVLSACAKL 229
           I D   K  +   N+M   Y +     ++ + + ++ +    + P + T   ++  CA+ 
Sbjct: 65  ILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ- 123

Query: 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289
              + G   H  + +     +  +E+ L  MYA    +     +F +++  D++  T +V
Sbjct: 124 SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMV 183

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
           +     G +  AR  FD MP+RD+V W AMI GY +  + REAL LF+ MQ   ++ +E 
Sbjct: 184 SACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEV 243

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
           +++S++TAC +LGAL+ G+W   YI+KNK++  + +G AL+DMY KCG+V++A +VF EM
Sbjct: 244 SMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEM 303

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
             K+ +TW+  I GLA+NG+G K L++FS M    I P+E+T++ VL  C+  G VDEGR
Sbjct: 304 NEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGR 363

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529
            +F  M   HGIEP   HYGCMVDL GRAG L EAL  I  MP+KP++  WGALL ACR+
Sbjct: 364 SHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRM 423

Query: 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS 589
           +++ E+ E A+++++E++  N   YV L NIYA    WD    +RQ +   GI K PGCS
Sbjct: 424 YKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCS 483

Query: 590 MIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAV 649
           ++E+NG VHEF +GDKSHP    I     E++  LK  GY+   + V  D+ EE+KE A+
Sbjct: 484 VMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDAL 543

Query: 650 YQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHF 709
            +HSEK+A+AFGL S   G+ IRIVKNLR+C DCH ++K++S +++RE+IVRD+ RFHHF
Sbjct: 544 CKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHF 603

Query: 710 KHGSCSCKDYW 720
           K G CSCKD+W
Sbjct: 604 KDGECSCKDFW 614



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 135/498 (27%), Positives = 226/498 (45%), Gaps = 90/498 (18%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIP 76
           P I+ I++  ++ +LKQIH+Q +  GLL N  +  + V +       ++ Y+ ++  +  
Sbjct: 11  PTIALIDSFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCA 70

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRDIAVEFG 134
           +P++   N+MI+ YS+  +       Y  +L+S+  + PDNYTF FL++   +  A E G
Sbjct: 71  KPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQS-ACEAG 129

Query: 135 KELHCHVLKFGFDSSVFVQNALISTY----CL---------------------------C 163
             +H  ++K GF+    V++ LI  Y    CL                           C
Sbjct: 130 PAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKC 189

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G++  AR +FD   + D V+WNAM +GY +  Q  E   LF  M+  GV    V+++ V+
Sbjct: 190 GDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVV 249

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           +AC  L  LD GK AH Y+++ KI   + L  AL DMY  CG +  AL++F  +  K+V 
Sbjct: 250 TACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVY 309

Query: 284 SWTAIVTGYINRGQ-----------------------------------VDMARQYFDQM 308
           +W+  + G    G                                    VD  R +FD M
Sbjct: 310 TWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSM 369

Query: 309 PERDYVL------WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
            +RD+ +      +  M+D Y R  R  EAL     M    ++P      ++L AC    
Sbjct: 370 -KRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMP---LKPHAGAWGALLNACRMYK 425

Query: 363 ALELGEWVKTYIDKNKVKND-IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            +ELGE+    + + + KN   +V  +L ++Y   G+ ++   V R+ ++ +  +     
Sbjct: 426 NMELGEFASRKLIEVEGKNHGAYV--SLSNIYADTGNWDRVSNV-RQSMKAEGISKLPGC 482

Query: 422 VGLAINGH------GDKS 433
             + +NG       GDKS
Sbjct: 483 SVMEVNGEVHEFFSGDKS 500


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 257/655 (39%), Positives = 370/655 (56%), Gaps = 35/655 (5%)

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           +A KVF  +P P   LWNT++ G S  ++ ++   +  D     VRPD  T   +L    
Sbjct: 167 HARKVFDTVPSPDTVLWNTLLAGLSGSEAVESFARMVCD---GSVRPDATTLASVLPAAA 223

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
               V  G+ +H    K G      V   LIS Y  CG+V+ AR +FD+  K D+V +NA
Sbjct: 224 EVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNA 283

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + SGY        +  LF E+   G+ P S T+V ++   +                   
Sbjct: 284 LISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGH--------------- 328

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
                       D+ A C   GF L+  G   N  V   TAI T +     ++ AR+ FD
Sbjct: 329 ------------DLLAQCLH-GFVLKS-GFTANSPVS--TAITTLHCRLNDMESARKAFD 372

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
            MPE+    W AMI GY +      A+ LF +M   N+RP+  TI S L+ACA LGAL L
Sbjct: 373 TMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSL 432

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+W+   I +  ++ +++V  ALIDMY KCG + +A+R+F  M  K+  +W AMI G  +
Sbjct: 433 GKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGL 492

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G ++L ++  ML A ++P   T++ VL AC+H G+V+EG + F  MT  + I P   
Sbjct: 493 HGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIE 552

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILE 545
           H  CMVDLLGRAG L EA E+I   P       VWGALLGAC VH+D+++A++A++++ E
Sbjct: 553 HCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFE 612

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           LDP+N   YVLL N++ +  ++     +RQ    R + KTPG ++IE+    H F+AGD+
Sbjct: 613 LDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDR 672

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           +HPQ++ IY  L+++T+ +   GY P+      DV EE+KE  V  HSEKLA+AFGL+S+
Sbjct: 673 AHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLST 732

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            PG  IRI+KNLR+C+DCH   K +S V  R ++VRD +RFHHF+ G CSC DYW
Sbjct: 733 EPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/537 (22%), Positives = 235/537 (43%), Gaps = 57/537 (10%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLT-NPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           P +  +    ++  L QI + ++  G    +P     L+    S +    +  ++FR  P
Sbjct: 20  PYLRLVALSSTLRHLDQILAVSLASGHYPLDPAPATSLLLRYASLRAPTGHLLRLFRGFP 79

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF-------LLKGFTRDI 129
           RP   L N +++    + S +  +L           PD+++F F       L        
Sbjct: 80  RPDRFLRNALLRS---LPSLRPRLLFPC--------PDSFSFAFAATSLAALCSRGGGAA 128

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           +    + LH   +  G+ +  FV +AL   Y +   VD AR +FD     D V WN + +
Sbjct: 129 SSSAARALHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLA 188

Query: 190 GYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           G        E  + F  M   G V P + T+  VL A A++ D+ +G+  H + ++C + 
Sbjct: 189 GLSG----SEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLA 244

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            +  +   L  +Y+ CG++  A  +F  ++  D++++ A+++GY   G V          
Sbjct: 245 EHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVG--------- 295

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                                  ++ LF E+ T  + P+  T+V+++   +  G   L +
Sbjct: 296 ----------------------SSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQ 333

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            +  ++ K+    +  V  A+  ++C+  D+E A++ F  M  K   +W AMI G A NG
Sbjct: 334 CLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNG 393

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
             + ++ +F QM++ ++ P+ +T    LSAC   G +  G+ +   +  +  +EPN    
Sbjct: 394 LTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGK-WLHRIITEEDLEPNVYVM 452

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
             ++D+  + G ++EA  +   M  K N + W A++    +H     A    K +L+
Sbjct: 453 TALIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMIAGYGLHGQGAEALKLYKDMLD 508



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 200/429 (46%), Gaps = 43/429 (10%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           +HS   K GL  +  V   L++   S+ GD++ A  +F  + +P +  +N +I GYS   
Sbjct: 234 VHSFAEKCGLAEHEHVLTGLISLY-SKCGDVESARCLFDMMEKPDLVAYNALISGYSVNG 292

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLL---KGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
              + V ++ +++   + P++ T   L+     F  D+     + LH  VLK GF ++  
Sbjct: 293 MVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDL---LAQCLHGFVLKSGFTANSP 349

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V  A+ + +C   +++ AR  FD   +  + +WNAM SGY +    +    LF +M +  
Sbjct: 350 VSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLN 409

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V P  +TI   LSACA+L  L +GK  HR + E  + PN+ +  AL DMYA CG +  A 
Sbjct: 410 VRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEAR 469

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            IF  + NK+V+SW A++ GY   GQ                                 E
Sbjct: 470 RIFNTMDNKNVVSWNAMIAGYGLHGQ-------------------------------GAE 498

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGNALI 390
           AL L+++M  +++ P   T +S+L AC++ G +E G  V ++  D   +   I     ++
Sbjct: 499 ALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMV 558

Query: 391 DMYCKCGDVEKAQRVFREMLRK--DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           D+  + G +++A  +  E  +       W A++    +  H D  L   +      + P+
Sbjct: 559 DLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMV--HKDSDLAKLASQKLFELDPE 616

Query: 449 EVTYVGVLS 457
              Y  +LS
Sbjct: 617 NSGYYVLLS 625



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 164/356 (46%), Gaps = 21/356 (5%)

Query: 11  STLTQETPLISPIETCESMHQL--KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           STL    P+ SP       H L  + +H   +K G   N  V   + T  C    DM+ A
Sbjct: 314 STLVALIPVHSPFG-----HDLLAQCLHGFVLKSGFTANSPVSTAITTLHC-RLNDMESA 367

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            K F  +P  ++  WN MI GY++    +  V ++  M+K +VRP+  T    L    + 
Sbjct: 368 RKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQL 427

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            A+  GK LH  + +   + +V+V  ALI  Y  CG +  AR IF+     +VV+WNAM 
Sbjct: 428 GALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMI 487

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKI 247
           +GY    Q  E  KL+ +M    +LPTS T + VL AC+    ++ G +  R +  +  I
Sbjct: 488 AGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAI 547

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS--WTAIVTGYINRGQVDMAR--- 302
            P +     + D+    G++  A E+        V    W A++   +     D+A+   
Sbjct: 548 NPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLAS 607

Query: 303 -QYFDQMPERD--YVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRPDEFTIVSI 354
            + F+  PE    YVL + +   +    ++ EA  + +E ++   ++   +T++ I
Sbjct: 608 QKLFELDPENSGYYVLLSNL---HTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEI 660



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 124/268 (46%), Gaps = 7/268 (2%)

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           D    +A+   Y    +VD AR+ FD +P  D VLW  ++ G        EA+  F  M 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGL----SGSEAVESFARMV 203

Query: 341 T-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
              ++RPD  T+ S+L A A +  + +G  V ++ +K  +     V   LI +Y KCGDV
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           E A+ +F  M + D   + A+I G ++NG    S+++F++++   + P+  T V ++   
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +  G  D   +      ++ G   N      +  L  R   +  A +    MP K     
Sbjct: 324 SPFGH-DLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTME-S 381

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELD 547
           W A++     +   EMA    +Q+++L+
Sbjct: 382 WNAMISGYAQNGLTEMAVALFEQMVKLN 409


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/710 (36%), Positives = 395/710 (55%), Gaps = 70/710 (9%)

Query: 13  LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT--FCCSEKGDMKYACK 70
           LT    L   ++    +  LK++H+    L    NP++  KL+     C E G  +   K
Sbjct: 18  LTSFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTR---K 74

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF ++   +V  +N MI+ Y     + +G+L++ +M+    RPDNYT+P +LK  +    
Sbjct: 75  VFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSEN 134

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           + +G  +H  VLK G D ++FV N LI+ Y  CG +  AR +FD     DVV+WN+M +G
Sbjct: 135 LRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAG 194

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y    +FD+  ++  EME  G  P   T+  ++ A                      V N
Sbjct: 195 YAHNMRFDDALEICREMEDYGQKPDGCTMASLMPA----------------------VAN 232

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
              EN L           +  +IF N++ K++ISW  ++  Y+            + +P 
Sbjct: 233 TSSENVL-----------YVEKIFVNLERKNLISWNVMIRVYMK-----------NSLPT 270

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
                               +A+ L+ +M+   + PD  T  S+L AC +L AL LG  +
Sbjct: 271 --------------------QAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRI 310

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             Y++K K+  ++ + N+LIDMY +CG ++ A+RVF  M  +D  +WT++I    + G G
Sbjct: 311 HEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQG 370

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
             ++ +F++ML +   PD + +V +LSAC+H+G++DEGR YF  MT  + I P   HY C
Sbjct: 371 CNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYAC 430

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           +VDLLGRAG ++EA  +IK MP++PN  VW  LL +CRV  + ++  +AA  +L+L P+ 
Sbjct: 431 LVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQ 490

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              YVLL NIYA   RW    E+R ++  + I+KTPG S +E+N  VH F+AGD SHPQ+
Sbjct: 491 SGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQS 550

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
           KEIY +L  + + +K +GY+P+      DV EEDKE  +  HSEKLA+ F L+++     
Sbjct: 551 KEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQ 609

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IRI KNLR+C DCH  AKL+S + +RE+IVRD  RFHHFK G CSC DYW
Sbjct: 610 IRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/576 (42%), Positives = 353/576 (61%), Gaps = 23/576 (3%)

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL------FGEMERKGVLPTSVT 218
           ++D A  IF+   + +  +WN +  G+    + DE + L      +  M  + V P   T
Sbjct: 74  DLDYAHKIFNQMPQRNCFSWNTIIRGFS---ESDEDKALIAITLFYEMMSDEFVEPNRFT 130

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF-GNI 277
              VL ACAK   +  GK+ H    +     +  + + L  MY  CG M  A  +F  NI
Sbjct: 131 FPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNI 190

Query: 278 KNKD-------------VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
             KD             ++ W  ++ GY+  G    AR  FD+M +R  V W  MI GY 
Sbjct: 191 IEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYS 250

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
               F++A+ +FREM+  +IRP+  T+VS+L A + LG+LELGEW+  Y + + ++ D  
Sbjct: 251 LNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV 310

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           +G+ALIDMY KCG +EKA  VF  + R++  TW+AMI G AI+G    ++D F +M +A 
Sbjct: 311 LGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG 370

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           + P +V Y+ +L+AC+H G+V+EGR YF+ M    G+EP   HYGCMVDLLGR+G L+EA
Sbjct: 371 VRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEA 430

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
            E I NMP+KP+ ++W ALLGACR+  + EM +  A  ++++ P +   YV L N+YA+ 
Sbjct: 431 EEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQ 490

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
             W    E+R  + ++ I+K PGCS+I+++GV+HEFV  D SHP+ KEI   L E++  L
Sbjct: 491 GNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKL 550

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           +  GY P  ++V L++ EEDKE  ++ HSEK+A AFGLIS+ PG  IRIVKNLR+C DCH
Sbjct: 551 RLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCH 610

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              KL+S VY R++ VRD+ RFHHF+ GSCSC DYW
Sbjct: 611 SSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 217/464 (46%), Gaps = 84/464 (18%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS---EKGDMKYACKVFRKI 75
           L   I  C ++  L QIH+  IK G + +     +++ FC +      D+ YA K+F ++
Sbjct: 26  LFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQM 85

Query: 76  PRPSVCLWNTMIKGYSRIDSHKN--GVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVE 132
           P+ +   WNT+I+G+S  D  K    + ++ +M+  + V P+ +TFP +LK   +   ++
Sbjct: 86  PQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQ 145

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCG--------------EVDM---------- 168
            GK++H   LK+GF    FV + L+  Y +CG              E DM          
Sbjct: 146 EGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRD 205

Query: 169 ---------------------ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
                                AR +FD   +  VV+WN M SGY     F +  ++F EM
Sbjct: 206 GEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM 265

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           ++  + P  VT+V VL A ++L  L++G+  H Y ++  I  + +L +AL DMY+ CG +
Sbjct: 266 KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 325

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A+ +F  +  ++VI+W+A++ G+   GQ                              
Sbjct: 326 EKAIHVFERLPRENVITWSAMINGFAIHGQAG---------------------------- 357

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVG 386
              +A+  F +M+ + +RP +   +++LTAC++ G +E G  +    +  + ++  I   
Sbjct: 358 ---DAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHY 414

Query: 387 NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
             ++D+  + G +++A+     M ++ D   W A++    + G+
Sbjct: 415 GCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGN 458



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 143/292 (48%), Gaps = 9/292 (3%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD K A  +F K+ + SV  WNTMI GYS     K+ V ++ +M K D+RP+  T   +L
Sbjct: 222 GDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVL 281

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
              +R  ++E G+ LH +    G      + +ALI  Y  CG ++ A  +F+   +++V+
Sbjct: 282 PAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVI 341

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-HRY 241
           TW+AM +G+    Q  +    F +M + GV P+ V  + +L+AC+    ++ G+R   + 
Sbjct: 342 TWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQM 401

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVTGYINRGQVD 299
           V    + P +     + D+    G +  A E   N  IK  DVI W A++     +G V+
Sbjct: 402 VSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVI-WKALLGACRMQGNVE 460

Query: 300 MARQ----YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           M ++      D +P  D   + A+ + Y     + E   +   M+  +IR D
Sbjct: 461 MGKRVANILMDMVPH-DSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKD 511


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/692 (38%), Positives = 392/692 (56%), Gaps = 70/692 (10%)

Query: 32  LKQIHSQT-IKLGLLTNPTVQNKLVTF--CCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
           LK++HS+  I   L +NP++  KL+     C E    ++   +F +IP+ +V  +N MI+
Sbjct: 54  LKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRH---IFDEIPKKNVVFFNVMIR 110

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
            Y     + + +L++ +M    + PD+YT+P +LK  +    +  G ++H  V++ G D 
Sbjct: 111 SYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDL 170

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           +VFV N LIS Y  CG +  A  + D     DVV+WN++ +G  R  QFD+  ++  EME
Sbjct: 171 NVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEME 230

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
             G+ P + T+  +L A                      V N  L+N           + 
Sbjct: 231 LLGLKPDAGTMASLLPA----------------------VTNTCLDN-----------VS 257

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
           F  E+F  + NK ++SW  ++  Y+N           + MP                   
Sbjct: 258 FVKEMFMKLANKSLVSWNVMIAVYMN-----------NSMPA------------------ 288

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             EA+ +F +M+   + PD  +I S+L AC +L AL LG  +  Y+ + +++ ++ + NA
Sbjct: 289 --EAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENA 346

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDMY KCG +E A+ VF +M  +D  +WT+MI    +NG G  ++ +FS+M    + PD
Sbjct: 347 LIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPD 406

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
            + +V VLSAC+H G++DEGR YF  MT +  I P   H+ CMVDLLGRAG ++EA   I
Sbjct: 407 SIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFI 466

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
           K MPM+PN  VWGALL ACRV+ +  +  +AA Q+ +L P+    YVLL NIYA   RW+
Sbjct: 467 KQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWE 526

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
           +   +R ++  +GIKK PG S  E++  VH F+AGD+SHPQ+K+IY +LD     +K  G
Sbjct: 527 DVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAG 586

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           Y+P+      DV EEDKE  +  HSEKLA+AF ++++ PG  IRI KNLR+C DCH  AK
Sbjct: 587 YVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAK 646

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           L+S +  RE+ +RD  RFHHF +G CSC DYW
Sbjct: 647 LISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/615 (39%), Positives = 363/615 (59%), Gaps = 7/615 (1%)

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           P   ++  + +  TR   ++ G++ H  ++  G   + F+   +++ Y   G++D A  +
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 173 FDVSYKDDVVTWNAMFSGYKR---VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229
           FD       + +N++   Y R           + +  M   G+L  + T+  VL +CA L
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289
             + +G+  H       +  +  +  +L DMY  CG +G A ++F  +  +D+ SW A++
Sbjct: 195 SRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALI 254

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QTSNIRPD 347
            GY+  G++ +A   F++M  R+ V WTAMI GY +     +AL LF EM    S ++P+
Sbjct: 255 AGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPN 314

Query: 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407
             TIVS+L ACA   ALE G  +  + +   +  +  V  AL  MY KC  + +A+  F 
Sbjct: 315 WVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFD 374

Query: 408 EMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
            + +  K    W  MI   A +G G +++ +F  MLRA + PD VT++G+LS C+H+G++
Sbjct: 375 MIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLI 434

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           D G  +F DM   H +EP   HY C+VDLLGRAG L EA E+I  MPM+    VWGALL 
Sbjct: 435 DAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLA 494

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           ACR HR+ E+AE+AA+++  L+PDN   YVLL N+YA    W+  ++LR ++  +G+KK+
Sbjct: 495 ACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKS 554

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
           PGCS IE+NG  H F+  DKSHPQ KEIY  L+ +   +K  GY+PD S V  D+ EE+K
Sbjct: 555 PGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEK 614

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           E  +  HSEKLA+AFGL+++ PGV +R+ KNLR+C DCH   K +S +Y+RE+IVRD  R
Sbjct: 615 EYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNR 674

Query: 706 FHHFKHGSCSCKDYW 720
           FH FK GSCSC DYW
Sbjct: 675 FHCFKDGSCSCGDYW 689



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 183/433 (42%), Gaps = 76/433 (17%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q H+Q +  GL  N  +  K+V    S  GD+  A  VF +I  PS  L+N++I+ Y+R
Sbjct: 97  QQAHAQIVLHGLQPNAFLAAKMVAMYASS-GDLDSAVVVFDRIDNPSSLLYNSIIRAYTR 155

Query: 93  ---IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
                     +  Y  M    +  DN+T PF+LK       V  G+ +H   L+ G +  
Sbjct: 156 HGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGD 215

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
            +V  +LI  Y  CG +  AR +FD     D+ +WNA+ +GY +  +      LF  ME 
Sbjct: 216 FYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEH 275

Query: 210 KGVL---------------------------------PTSVTIVLVLSACAKLKDLDVGK 236
           + ++                                 P  VTIV VL ACA+   L+ G+
Sbjct: 276 RNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGR 335

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI--KNKDVISWTAIVTGYIN 294
           R H +     +  N  ++ AL  MYA C  +  A   F  I    K++I+W  ++T Y +
Sbjct: 336 RIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYAS 395

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G                                  EA+++F  M  + ++PD  T + +
Sbjct: 396 HGC-------------------------------GVEAVSIFENMLRAGVQPDAVTFMGL 424

Query: 355 LTACANLGALELGEWVKTYIDK---NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-L 410
           L+ C++ G ++ G  +  + D    + V+  +     ++D+  + G + +A+ +  +M +
Sbjct: 425 LSGCSHSGLIDAG--LNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPM 482

Query: 411 RKDKFTWTAMIVG 423
           +     W A++  
Sbjct: 483 QAGPSVWGALLAA 495



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 10/139 (7%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCE---SMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           M  + S   P+ +T    ++S +  C    ++ + ++IH     +GL  N +VQ  L   
Sbjct: 304 MLQDGSEMKPNWVT----IVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGM 359

Query: 58  CCSEKGDMKYACKVFRKIPR--PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN 115
                  ++  C  F  I +   ++  WNTMI  Y+        V I+ +ML++ V+PD 
Sbjct: 360 YAKCYSLVEARC-CFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDA 418

Query: 116 YTFPFLLKGFTRDIAVEFG 134
            TF  LL G +    ++ G
Sbjct: 419 VTFMGLLSGCSHSGLIDAG 437


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/686 (37%), Positives = 391/686 (56%), Gaps = 32/686 (4%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           +H   +K+G  +N  +   L+    S  G +  A +VF +I    +  W  MI  Y+  D
Sbjct: 68  VHGCVLKVGYGSNTFIGTALID-AYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAEND 126

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
                +  +  M  +  +P+N+TF  +LK        + GK +HC VLK  ++  ++V  
Sbjct: 127 CFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGV 186

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
            L+  Y  CG+ D A   F    K+DV+ W+ M S + +  Q ++  ++F +M R  V+P
Sbjct: 187 GLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIP 246

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
              T   VL A A ++ LD+ K  H +  +  +  ++ + NAL   YA CG         
Sbjct: 247 NQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCG--------- 297

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
                                  ++ + + F+ + +R+ V W  +I  Y+++     AL+
Sbjct: 298 ----------------------CIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALS 335

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LF  M    ++  E T  SIL ACA L ALELG  V     K     D+ VGNALIDMY 
Sbjct: 336 LFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYA 395

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
           KCG ++ A+ +F  +  +DK +W A+I G +++G G +++ MF+ M      PDE+T+VG
Sbjct: 396 KCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVG 455

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           VLSAC++TG +DEG++YF  M   +GIEP   HY CMV L+GR+G+L++A++ I+++P +
Sbjct: 456 VLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFE 515

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
           P+ ++W ALLGAC +H D E+  ++A+++LEL+P +EA +VLL NIYA   RW N   +R
Sbjct: 516 PSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVR 575

Query: 575 QMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS 634
           + +  +G+KK PG S IE  G VH F   D SH   K I   L+ +    +  GY P ++
Sbjct: 576 KHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLN 635

Query: 635 EVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVY 694
            V LDV +++KER ++ HSE+LA+AFGL+    G  IRI+KNLR+CVDCH + KL+S + 
Sbjct: 636 AVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIV 695

Query: 695 DREVIVRDKTRFHHFKHGSCSCKDYW 720
            R++IVRD  RFHHF++GSCSC DYW
Sbjct: 696 GRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 217/460 (47%), Gaps = 33/460 (7%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF ++P  +   + T+I GY++ +       ++  +       + + F  +LK       
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
            E G+ +H  VLK G+ S+ F+  ALI  Y + G V MAR +FD     D+V+W  M + 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y     F E  + F +M   G  P + T   VL AC  L++ D GK  H  V +     +
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           L +   L ++Y  CG+   A   FG++   DVI W+ +++ +   GQ +           
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSE----------- 230

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
                               +AL +F +M+ + + P++FT  S+L A A++ +L+L + +
Sbjct: 231 --------------------KALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTI 270

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             +  K  +  D+FV NAL+  Y KCG +E++  +F  +  ++  +W  +IV     G G
Sbjct: 271 HGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDG 330

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           +++L +FS MLR  +   EVTY  +L AC     ++ G +    +T +     + A    
Sbjct: 331 ERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHC-LTAKTIYGQDVAVGNA 389

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           ++D+  + G + +A  +   + ++ + + W A++    +H
Sbjct: 390 LIDMYAKCGSIKDARFMFDMLDLR-DKVSWNAIICGYSMH 428



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 158/343 (46%), Gaps = 7/343 (2%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+  T  + L +  +  ES+   K IH   +K GL T+  V N L+  C ++ G ++ + 
Sbjct: 246 PNQFTFSSVLQASADI-ESLDLSKTIHGHALKAGLSTDVFVSNALMA-CYAKCGCIEQSM 303

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           ++F  +   +   WNT+I  Y ++   +  + ++ +ML+  V+    T+  +L+      
Sbjct: 304 ELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLA 363

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A+E G ++HC   K  +   V V NALI  Y  CG +  AR +FD+    D V+WNA+  
Sbjct: 364 ALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIIC 423

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIV 248
           GY       E  K+F  M+     P  +T V VLSAC+    LD GK+    +K+   I 
Sbjct: 424 GYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIE 483

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMAR---QY 304
           P +     +  +    G +  A++   +I     V+ W A++   +    V++ R   Q 
Sbjct: 484 PCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQR 543

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
             ++  RD      + + Y R  R+     + + M+   ++ +
Sbjct: 544 VLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKE 586


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/688 (38%), Positives = 392/688 (56%), Gaps = 33/688 (4%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           +IHS     GL ++  V   LV F  ++ G +  A ++F  +    V  WN MI G S  
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFY-AKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
               + V + + M +  + P++ T   +L       A+  GK LH + ++  FD+ V V 
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
             L+  Y  C  +  AR IFDV    + V+W+AM  GY       E  +LF +M  K  +
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAM 308

Query: 214 -PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            PT VT+  VL ACAKL DL  G++ H Y+ +   V +++L N L  MYA CG       
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCG------- 361

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
                                    +D A ++FD M  +D V ++A++ G ++      A
Sbjct: 362 ------------------------VIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVA 397

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L++FR MQ S I PD  T++ +L AC++L AL+ G     Y+       D  + NALIDM
Sbjct: 398 LSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDM 457

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG +  A+ VF  M R D  +W AMI+G  I+G G ++L +F  +L   + PD++T+
Sbjct: 458 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 517

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           + +LS+C+H+G+V EGR +F  M+    I P   H  CMVD+LGRAG ++EA   I+NMP
Sbjct: 518 ICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMP 577

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            +P+  +W ALL ACR+H++ E+ E  +K+I  L P++   +VLL NIY+A  RWD+   
Sbjct: 578 FEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAH 637

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R    D G+KK PGCS IE+NG+VH FV GD+SH Q  +I  KL+E+  ++K +GY  +
Sbjct: 638 IRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAE 697

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            S VF DV EE+KE+ +  HSEKLA+AFG+++   G  I + KNLR+C DCH   K +++
Sbjct: 698 CSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTV 757

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  RE+ VRD  RFHHFK+G+C+C D+W
Sbjct: 758 ITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 156/511 (30%), Positives = 247/511 (48%), Gaps = 36/511 (7%)

Query: 23  IETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           +E C   +S+ + K+IH   +K     + +V +KL     S    +  A ++F +IP PS
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCN-QVVLARRLFDEIPNPS 73

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           V LWN +I+ Y+        + +Y  ML   VRP+ YT+PF+LK  +  +A+E G E+H 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           H   FG +S VFV  AL+  Y  CG +  A+ +F      DVV WNAM +G       D+
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             +L  +M+ +G+ P S TIV VL    + K L  GK  H Y         +++   L D
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLD 253

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA C  + +A +IF  +  ++ +SW+A++ GY+    +  A + FDQM  +D       
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKD------- 306

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
                                   + P   T+ S+L ACA L  L  G  +  YI K   
Sbjct: 307 -----------------------AMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGX 343

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
             DI +GN L+ MY KCG ++ A R F  M  KD  +++A++ G   NG+   +L +F  
Sbjct: 344 VLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRM 403

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M  + I PD  T +GVL AC+H   +  G      + ++ G   +      ++D+  + G
Sbjct: 404 MQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR-GFATDTLICNALIDMYSKCG 462

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            ++ A EV   M  + + + W A++    +H
Sbjct: 463 KISFAREVFNRMD-RHDIVSWNAMIIGYGIH 492



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 203/446 (45%), Gaps = 39/446 (8%)

Query: 107 LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166
           L+ +V+ +NY    LL+   +  ++   K++H H LK   ++   V + L   Y  C +V
Sbjct: 3   LRXEVK-NNYLH--LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQV 59

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
            +AR +FD      V+ WN +   Y     FD    L+  M   GV P   T   VL AC
Sbjct: 60  VLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC 119

Query: 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWT 286
           + L  ++ G   H + K   +  ++ +  AL D YA CG +  A  +F ++ ++DV++W 
Sbjct: 120 SGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
           A++ G    G  D                               +A+ L  +MQ   I P
Sbjct: 180 AMIAGCSLYGLCD-------------------------------DAVQLIMQMQEEGICP 208

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           +  TIV +L       AL  G+ +  Y  +    N + VG  L+DMY KC  +  A+++F
Sbjct: 209 NSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIF 268

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM-LRASIIPDEVTYVGVLSACTHTGMV 465
             M  +++ +W+AMI G   +    ++L++F QM L+ ++ P  VT   VL AC     +
Sbjct: 269 DVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDL 328

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
             GR+      I+ G   +      ++ +  + G +++A+     M  K +S+ + A++ 
Sbjct: 329 SRGRKLHC-YIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPK-DSVSFSAIVS 386

Query: 526 ACRVHRDAEMAEMAAK--QILELDPD 549
            C  + +A +A    +  Q+  +DPD
Sbjct: 387 GCVQNGNAAVALSIFRMMQLSGIDPD 412



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 17/308 (5%)

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
           N  N D      +   Y++  QV +AR+ FD++P    +LW  +I  Y     F  A+ L
Sbjct: 37  NTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDL 96

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
           +  M    +RP+++T   +L AC+ L A+E G  + ++     +++D+FV  AL+D Y K
Sbjct: 97  YHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAK 156

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG + +AQR+F  M  +D   W AMI G ++ G  D ++ +  QM    I P+  T VGV
Sbjct: 157 CGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGV 216

Query: 456 LSACTHTGMVDEGRE---YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           L        +  G+    Y    +  +G+         ++D+  +   L  A ++   M 
Sbjct: 217 LPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG----LLDMYAKCQCLLYARKIFDVMG 272

Query: 513 MKPNSIVWGALLGACRVHRDA--EMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNRWD 568
           ++ N + W A++G   V  D   E  E+  + IL+  +DP      V L ++  AC +  
Sbjct: 273 VR-NEVSWSAMIGG-YVXSDCMKEALELFDQMILKDAMDPTP----VTLGSVLRACAKLT 326

Query: 569 NFRELRQM 576
           +    R++
Sbjct: 327 DLSRGRKL 334


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/560 (42%), Positives = 348/560 (62%), Gaps = 3/560 (0%)

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G++  A+ +F+     +   WNA+   Y    + +     + +M    V   S T   +L
Sbjct: 36  GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            AC  L  +    + H  V +     ++   NAL  +YA CGE+  A ++F NI  +D +
Sbjct: 96  RACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAV 155

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           SW  ++ GYI  G V  A   F  MP ++ V WT++I G +   +  EAL+L  EMQ + 
Sbjct: 156 SWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAG 215

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
              D   I S+LTACANLGAL+ G W+  Y+  N V  D  +G AL++MY KCGD+E+A 
Sbjct: 216 FELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEAL 275

Query: 404 RVFREML--RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
            VF ++   +KD + WTAMI G AI+G G ++L+ F++M R  I P+ +T+  VL AC++
Sbjct: 276 SVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSY 335

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
            G+V+EG+E F  M   + + P+  HYGCMVDLLGR+G L+EA E+IK MPMKP++++WG
Sbjct: 336 GGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWG 395

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
           ALL AC +HRD  +       ++E+D D+   Y+ L  I AA  +W    E+R  +   G
Sbjct: 396 ALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLG 455

Query: 582 IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF-VGYMPDISEVFLDV 640
           +  +PG S + +NG+VHEF+AG + HPQ ++I LKL ++   L+   GY P   ++ LD+
Sbjct: 456 VPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDL 515

Query: 641 GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIV 700
             E+KE A+ QHSEKLA+AFGLI++ PG TIR++KNLR+C DCH +AKLVS +Y RE+I+
Sbjct: 516 ENEEKETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIM 575

Query: 701 RDKTRFHHFKHGSCSCKDYW 720
           RD+ RFHHF+ GSCSCKDYW
Sbjct: 576 RDRVRFHHFRDGSCSCKDYW 595



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 135/429 (31%), Positives = 198/429 (46%), Gaps = 67/429 (15%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK-GDMKYACKVFRKIPRPSVCLWNTMI 87
           M QLKQI +Q IK  ++T P +  K +T C S   GD+ YA +VF  I  P+  +WN +I
Sbjct: 1   MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           + YS  D  +   L Y  ML S V  ++YTFPFLL+     +A+    ++H  V+K GF 
Sbjct: 61  RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFG 120

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR-------------- 193
           S VF  NAL+  Y LCGE+  AR +FD   + D V+WN M  GY +              
Sbjct: 121 SDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDM 180

Query: 194 -----------------VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
                              Q  E   L  EM+  G     V I  +L+ACA L  LD G+
Sbjct: 181 PLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGR 240

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK--NKDVISWTAIVTGYIN 294
             H YV    +  + ++  AL +MY  CG+M  AL +FG +K   KDV  WTA++ G+  
Sbjct: 241 WLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAI 300

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G                               R  EAL  F  M+   IRP+  T  ++
Sbjct: 301 HG-------------------------------RGVEALEWFNRMRREGIRPNSITFTAV 329

Query: 355 LTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRK 412
           L AC+  G +E G E  K+      V   I     ++D+  + G +++A+ + ++M ++ 
Sbjct: 330 LRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKP 389

Query: 413 DKFTWTAMI 421
               W A++
Sbjct: 390 SAVIWGALL 398


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/646 (39%), Positives = 387/646 (59%), Gaps = 24/646 (3%)

Query: 7   ISPPSTLTQETPLISPIET--CESMHQLKQIHSQTIKLGLLTNPT---VQNKLVTFCCSE 61
           +SPPS      PL++ + T    S  +L Q+H+  +  GL+++ +   + ++LV    + 
Sbjct: 1   MSPPSL----CPLLAILSTRHPPSAGRLLQLHAHLLTAGLMSSRSPFPLASRLVE-ALAH 55

Query: 62  KGDMKYACK---------VFRKIPRPSVCLWNTMIKGYSRIDSH---KNGVLIYLDMLKS 109
             D +++ +              P  S   +N  ++  S           + +Y  +L+S
Sbjct: 56  SDDPRHSPRPLLHALALLASLPTPPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRS 115

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
             RPD+ TFPFLLK   R     +G  +  +VL  GF + VFV NA +    +C  +  A
Sbjct: 116 -ARPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEA 174

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAK 228
           R +FD S+  D+V+WN +  GY R     E  ++F  M   G V P  VT++ V+S  A+
Sbjct: 175 RKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQ 234

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           L+DL++G+R H YV+   +   + L N + DMY  CG++  A  +F  I  K ++SWT +
Sbjct: 235 LRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTM 294

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           + GY   G +D AR+ FD+MPERD   W A++ GY++  R +EAL LF +MQ + + PD+
Sbjct: 295 IVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDD 354

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T+V++L+AC+ LGALE+G WV  YID+ +V   + +G  L+DMY KCG++EKA RVF+E
Sbjct: 355 ITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKE 414

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           +  K+  TWTAMI GLA +GH D ++  F +M+   + PDE+T++GVLSAC H G+V EG
Sbjct: 415 IPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEG 474

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           +E+F+ M  ++ +E    HY CMVDLLGRAG+L+EA  ++  MPM+P+++VWGAL  ACR
Sbjct: 475 QEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACR 534

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
           +H +  + E AA +++ELDP +  +YVLL N+YA  N      ++R M+   G++K PGC
Sbjct: 535 MHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGC 594

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS 634
           S IE+NGVVHEF+  DKSH     IY  L E+T  ++    M D S
Sbjct: 595 SCIELNGVVHEFIVKDKSHTDIAAIYDCLHEITLQIEHTANMIDTS 640


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/768 (35%), Positives = 415/768 (54%), Gaps = 77/768 (10%)

Query: 26  CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT 85
           C  +H  KQ+H+  +  G   +  +  KL+    +  GD+ +A   F +I    V  WN+
Sbjct: 53  CTKVHLAKQLHALLVVSGKTQSIFLSAKLINRY-AFLGDIPHARLTFDQIQTKDVYTWNS 111

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF 144
           MI  Y+RI      V  + + L +  ++ D+YTFP +++       ++ G+++HC VLK 
Sbjct: 112 MISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGN---LDDGRKVHCLVLKL 168

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           GF+  V++  + I  Y   G V +A  +FD     D+ TWNAM SG+    +  E  ++F
Sbjct: 169 GFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVF 228

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
            EM  K V   SVTI  +L  C +L D+  G   H Y  +  +  +L + NAL +MYA  
Sbjct: 229 DEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKF 288

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM------PE-------- 310
           GE+  A  IF  +K +D++SW +++  +    +  +A   +++M      P+        
Sbjct: 289 GELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLA 348

Query: 311 --------------------------RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                                      D  L  A+ID Y ++     A  +F  +   ++
Sbjct: 349 SVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDV 408

Query: 345 --------------------------------RPDEFTIVSILTACANLGALELGEWVKT 372
                                            P++ T VSILTA + LGAL+ G     
Sbjct: 409 ISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHG 468

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            + KN +  DIFV   L+DMY KCG +  A  +F E+  +   +W A+I    ++G+G K
Sbjct: 469 QLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLK 528

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           ++ +F +M    + PD +T+V +LSAC+H+G+VDEG+  F  M   +GI P+  HYGCMV
Sbjct: 529 AVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMV 588

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRAGHL +A   +KNMP++P+  VWGALLGACR+H + E+    +  +L+++ +N  
Sbjct: 589 DLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVG 648

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVLL NIYA    W+   E+R +  DRG+KKTPG S IE++  +  F  G+++HP+ +E
Sbjct: 649 YYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEE 708

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY +L  +T+ +K +GY+PD + V  DV +++KE  +  HSE+LAMAFG+IS+ P  T++
Sbjct: 709 IYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQ 768

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I KNLR+C DCH   K +S + +RE+IVRD  RFHHFK G CSC DYW
Sbjct: 769 IFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/553 (42%), Positives = 347/553 (62%), Gaps = 1/553 (0%)

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           A+ IF          +N++       K   E   L+  M + G+ P  +T   V+ AC +
Sbjct: 119 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 178

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
                 G   H +V +     +  + ++L  +YA   ++G A ++F     +DV+SW A+
Sbjct: 179 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 238

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           + GY+   ++  AR  FD+M  RD + W  MI+GY    +  EAL LF +M+   ++P E
Sbjct: 239 IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTE 298

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T+VS+L+ACA+LGAL+ G  + TYI+ N+++ +  VG AL+DMY KCG +  A +VF  
Sbjct: 299 ATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNA 358

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M  KD   W  +I G+AI+G+  ++  +F +M  A + P+++T+V +LSAC+H GMVDEG
Sbjct: 359 MESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEG 418

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           ++    M+  +GIEP   HYGC++DLL RAG L EA+E+I  MPM+PN    GALLG CR
Sbjct: 419 QKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCR 478

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
           +H + E+ EM  K+++ L P +   Y+LL NIYAA  +WD+ R++R ++   GI K PG 
Sbjct: 479 IHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGV 538

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK-FVGYMPDISEVFLDVGEEDKER 647
           S+IE+ G+VH FVAGD SHP++ +IY KL+E+ + LK  +GY  D   V LD+ EEDKE 
Sbjct: 539 SVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEH 598

Query: 648 AVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFH 707
           A+  HSEKLA+A+GL+       IRIVKNLR+C DCH + KL+S VY RE+IVRD+ RFH
Sbjct: 599 ALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFH 658

Query: 708 HFKHGSCSCKDYW 720
           HF+ G CSC D+W
Sbjct: 659 HFEDGECSCLDFW 671



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 222/469 (47%), Gaps = 90/469 (19%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTI-------KLGLLTNPTVQNKLVT 56
           N   +PPS   Q   L +P   C+++  LKQ+H+Q I       +L  L + +  +   T
Sbjct: 59  NPLTNPPSN-PQILSLFNP---CKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFPT 114

Query: 57  FCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
           F       + YA  +F  +  P   L+N++I+  S   +    + +Y  ML+S ++PD+ 
Sbjct: 115 F-------LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHM 167

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           T+PF++K         FG  +H HV+K GF+   ++ ++LI  Y    ++  A+ +F++ 
Sbjct: 168 TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLC 227

Query: 177 YKDDVVTWNAMFSGY-KRVKQ------FD------------------------ETRKLFG 205
              DVV+WNAM  GY K V+       FD                        E   LF 
Sbjct: 228 SARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFD 287

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           +M   GV PT  T+V +LSACA L  LD G   H Y+ + +I  N I+  AL DMYA CG
Sbjct: 288 QMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG 347

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
           ++  A ++F  +++KDV++W  I+ G    G V  A+Q                      
Sbjct: 348 KISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQ---------------------- 385

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-----KTYIDKNKVK 380
                    LF+EM+ + + P++ T V+IL+AC++ G ++ G+ +      +Y  + KV+
Sbjct: 386 ---------LFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVE 436

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
           +       +ID+  + G +E+A  +   M +  +     A++ G  I+G
Sbjct: 437 HY----GCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHG 481


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/534 (44%), Positives = 337/534 (63%), Gaps = 33/534 (6%)

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           SGY R +       ++  M  K V P   T   ++ AC     ++ GK+ H +V +    
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLK---- 122

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
                              GF  + F         S   ++  Y+N   ++ AR+ FD M
Sbjct: 123 ------------------FGFGADGF---------SLNNLIHMYVNFQSLEQARRVFDNM 155

Query: 309 PERD--YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
           P+RD   V W AMI  Y++ NR  EA  LF  M+  N+  D+F   S+L+AC  LGALE 
Sbjct: 156 PQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQ 215

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+W+  YI+K+ ++ D  +   +IDMYCKCG +EKA  VF E+ +K   +W  MI GLA+
Sbjct: 216 GKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAM 275

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G+ ++++F +M R  + PD +T+V VLSAC H+G+V+EG+ YF  MT   G++P   
Sbjct: 276 HGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGME 335

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           H+GCMVDLLGRAG L EA ++I  MP+ P++ V GAL+GACR+H + E+ E   K+++EL
Sbjct: 336 HFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIEL 395

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           +P N   YVLL N+YA+  RW++  ++R+++ DRG+KK PG SMIE    V EF+AG ++
Sbjct: 396 EPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRA 455

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           HPQ KEIY KLDE+   ++ +GY+PD   V  D+ EE+KE  +Y HSEKLA+AFGL+ + 
Sbjct: 456 HPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTK 515

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           PG T+RI KNLR+C DCH+ +KL+S VYDRE+I+RD+ RFHHF+ G CSCKDYW
Sbjct: 516 PGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 197/429 (45%), Gaps = 64/429 (14%)

Query: 8   SPPSTLTQET---PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           SPPS  + +    PL   +++C +M +LKQ HSQ I+LGL  +     +++ FC   K  
Sbjct: 10  SPPSLSSAKAHKLPLYG-LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISK-- 66

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
                                   GY R    +N + +Y  ML   V P+ +T+P L++ 
Sbjct: 67  -----------------------SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRA 103

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD--VV 182
              D A+E GK++H HVLKFGF +  F  N LI  Y     ++ AR +FD   + D   V
Sbjct: 104 CCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSV 163

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNAM + Y +  +  E   LF  M  + V+        +LSAC  L  L+ GK  H Y+
Sbjct: 164 SWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYI 223

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
           ++  I  +  L   + DMY  CG +  A E+F  +  K + SW  ++ G    G+ +   
Sbjct: 224 EKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEA-- 281

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                        A+ LF+EM+   + PD  T V++L+ACA+ G
Sbjct: 282 -----------------------------AIELFKEMEREMVAPDGITFVNVLSACAHSG 312

Query: 363 ALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAM 420
            +E G+    Y+ +   +K  +     ++D+  + G +E+A+++  EM +  D     A+
Sbjct: 313 LVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGAL 372

Query: 421 IVGLAINGH 429
           +    I+G+
Sbjct: 373 VGACRIHGN 381



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 130/291 (44%), Gaps = 7/291 (2%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP- 76
           PLI       ++ + KQIH+  +K G   +    N L+    + +  ++ A +VF  +P 
Sbjct: 99  PLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQ-SLEQARRVFDNMPQ 157

Query: 77  --RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
             R SV  WN MI  Y + +       ++  M   +V  D +    +L   T   A+E G
Sbjct: 158 RDRNSVS-WNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG 216

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K +H ++ K G +    +   +I  YC CG ++ A  +F+   +  + +WN M  G    
Sbjct: 217 KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMH 276

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLIL 253
            + +   +LF EMER+ V P  +T V VLSACA    ++ GK   +Y+ E   + P +  
Sbjct: 277 GKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEH 336

Query: 254 ENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQ 303
              + D+    G +  A ++   +  N D     A+V      G  ++  Q
Sbjct: 337 FGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQ 387


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/702 (36%), Positives = 383/702 (54%), Gaps = 49/702 (6%)

Query: 65  MKYACKVFRKIP--RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFL 121
           +  A   F  +P  R    L N +I  Y+R       V ++  +L S  +RPD+Y+F  L
Sbjct: 104 LPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTAL 163

Query: 122 LK--GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC---------------- 163
           L   G   +I+V    +LHC VLK G   ++ V NAL++ Y  C                
Sbjct: 164 LSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEM 223

Query: 164 ------------------GEVDMARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
                             G+V  AR +F+ V  K DVV WNAM SGY       E  +LF
Sbjct: 224 PNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVV-WNAMISGYVHSGMAVEAFELF 282

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE------NALT 258
             M  + V     T   VLSACA +     GK  H  +   ++ PN + E      NAL 
Sbjct: 283 RRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQI--IRLQPNFVPEAALPVNNALV 340

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
             Y+ CG +  A  IF N+  KDV+SW  I++GY+    +D A + F++MP ++ + W  
Sbjct: 341 TFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMV 400

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           M+ GY+      +AL LF +M++ N++P ++T    + AC  LGAL+ G+ +  +I +  
Sbjct: 401 MVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLG 460

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
            +     GNALI MY +CG V++A  +F  M   D  +W AMI  L  +GHG ++L++F 
Sbjct: 461 FEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFD 520

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M+   I PD ++++ VL+AC H+G+VDEG  YF  M    GI P E HY  ++DLLGRA
Sbjct: 521 RMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRA 580

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G + EA ++IK MP +P   +W A+L  CR   D E+   AA Q+ ++ P ++  Y+LL 
Sbjct: 581 GRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLS 640

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           N Y+A   W +   +R+++ DRG+KK PGCS IE    VH F+ GD  HP+  E+Y  L+
Sbjct: 641 NTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLE 700

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
            + + ++ +GY+PD   V  D+    KE  ++ HSE+LA+ FGL++  PG T+ ++KNLR
Sbjct: 701 MVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLR 760

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C DCH     +S    RE++VRD  RFHHFK G CSC +YW
Sbjct: 761 ICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 213/504 (42%), Gaps = 57/504 (11%)

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSG 190
             ++L      F  D       +L++ Y     +  A   FD     + D V  NA+ S 
Sbjct: 71  LSRDLPAAATLFCADPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISA 130

Query: 191 YKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRA--HRYVKECKI 247
           Y R         +F  +   G L P   +   +LSA   L ++ V   A  H  V +   
Sbjct: 131 YARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGA 190

Query: 248 VPNLILENALTDMYAACGEMGF---ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
              L + NAL  +Y  C        A ++   + NKD ++WT +V GY+ RG V  AR  
Sbjct: 191 GGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSV 250

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           F+++  +  V+W AMI GY+      EA  LFR M    +  DEFT  S+L+ACAN+G  
Sbjct: 251 FEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLF 310

Query: 365 ELGEWVKTYI---DKNKVKNDIF-VGNALIDMYCKCGDVEKAQR---------------- 404
             G+ V   I     N V      V NAL+  Y KCG++  A+R                
Sbjct: 311 AHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTI 370

Query: 405 ---------------VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
                          VF EM  K++ +W  M+ G    G  + +L +F++M   ++ P +
Sbjct: 371 LSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCD 430

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
            TY G ++AC   G +  G++    + +Q G E + +    ++ +  R G + EA  +  
Sbjct: 431 YTYAGAIAACGELGALKHGKQLHGHI-VQLGFEGSNSAGNALITMYARCGAVKEAHLMFL 489

Query: 510 NMPMKPNSIVWGALLGACRVHRDA-EMAEMAAKQILE-LDPDNEAVYVLLCNIYAACNRW 567
            MP   +S+ W A++ A   H    E  E+  + + E + PD     +    +  ACN  
Sbjct: 490 VMP-NIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDR----ISFLTVLTACNHS 544

Query: 568 ----DNFRELRQMILDRGIKKTPG 587
               + FR    M  D GI   PG
Sbjct: 545 GLVDEGFRYFESMKRDFGI--IPG 566



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 166/407 (40%), Gaps = 74/407 (18%)

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
           +GD+  A  VF ++      +WN MI GY           ++  M+   V  D +TF  +
Sbjct: 241 RGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSV 300

Query: 122 LKGFTRDIAVEFGKELHCHVLK----FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           L           GK +H  +++    F  ++++ V NAL++ Y  CG + +AR IFD   
Sbjct: 301 LSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMT 360

Query: 178 KDDVVTWNAMFSGY-------KRVKQFDE------------------------TRKLFGE 206
             DVV+WN + SGY       K V+ F+E                          KLF +
Sbjct: 361 LKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNK 420

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M  + V P   T    ++AC +L  L  GK+ H ++ +     +    NAL  MYA CG 
Sbjct: 421 MRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGA 480

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +  A  +F  + N D +SW A+++     G                              
Sbjct: 481 VKEAHLMFLVMPNIDSVSWNAMISALGQHGH----------------------------- 511

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
              REAL LF  M    I PD  + +++LTAC + G ++ G     Y +  K    I  G
Sbjct: 512 --GREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEG---FRYFESMKRDFGIIPG 566

Query: 387 ----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
                 LID+  + G + +A+ + + M        W A++ G   +G
Sbjct: 567 EDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSG 613



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 147/317 (46%), Gaps = 13/317 (4%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           P + L     L++    C ++   ++I        +++  T+ +  V   C +K     A
Sbjct: 329 PEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDK-----A 383

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            +VF ++P  +   W  M+ GY      ++ + ++  M   +V+P +YT+   +      
Sbjct: 384 VEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGEL 443

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            A++ GK+LH H+++ GF+ S    NALI+ Y  CG V  A  +F V    D V+WNAM 
Sbjct: 444 GALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMI 503

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKI 247
           S   +     E  +LF  M  +G+ P  ++ + VL+AC     +D G R    +K +  I
Sbjct: 504 SALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGI 563

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDM----AR 302
           +P       L D+    G +G A ++   +  +   S W AI++G    G +++    A 
Sbjct: 564 IPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAAD 623

Query: 303 QYFDQMPERD--YVLWT 317
           Q F   P+ D  Y+L +
Sbjct: 624 QLFKMTPQHDGTYILLS 640


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/726 (36%), Positives = 403/726 (55%), Gaps = 52/726 (7%)

Query: 45  LTNP--TVQNKLVTFCCSEKGDMKYACKVFRKIP---RPSVCLWNTMIKGYSRIDSHKNG 99
           + NP    +  L+T  C+  G+++   ++F   P   R SV  +N MI GY+      + 
Sbjct: 74  IPNPDAIARTTLITAYCA-LGNLELGREIFNGTPLYMRDSV-FYNAMITGYAHNGDGHSA 131

Query: 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG-KELHCHVLKFGFDS-SVFVQNALI 157
           + ++  M + D RPD++TF  +L      +  E    ++HC V+K G    S  V NAL+
Sbjct: 132 LELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALL 191

Query: 158 STYC--------LCGEVDMARGIFDVSYKDDVVT-------------------------- 183
           S Y          C  +  AR +FD   K D +T                          
Sbjct: 192 SVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVE 251

Query: 184 -----WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
                WNAM SGY     F E   L  +M   G+    +T   ++SACA +    +GK+ 
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQM 311

Query: 239 HRYVKECKIVPN----LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           H Y+ + ++ PN    L + NAL  +Y    ++  A +IF  +  +++I+W AI++GY+N
Sbjct: 312 HAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVN 371

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G+++ A+ +F++MP ++ +  T MI G  +     E L LF++M+     P +F     
Sbjct: 372 AGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGA 431

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           LTAC+ LGALE G  +   +     ++ + VGNA+I MY KCG VE A+ VF  M   D 
Sbjct: 432 LTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDL 491

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +W +MI  L  +GHG K++++F QML+  + PD +T++ VL+AC+H G+V++GR YF  
Sbjct: 492 VSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNS 551

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           M   +GI P E HY  MVDL  RAG  + A  VI +MP KP + VW ALL  CR+H + +
Sbjct: 552 MLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMD 611

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           +   AA+Q+ +L P N+  YVLL NIYA   RW++  ++R+++ D+ ++K P CS IE+ 
Sbjct: 612 LGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVE 671

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
             VH F+  D  HP+   +Y  L+++  ++K +GY+PD   V  D+  E KE A+  HSE
Sbjct: 672 NKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSE 731

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           KLA+ FG++   P  T+R+ KN+R+C DCH   K +S V  RE+IVRD+ RFHHFK+G C
Sbjct: 732 KLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDC 791

Query: 715 SCKDYW 720
           SC+DYW
Sbjct: 792 SCRDYW 797



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/480 (28%), Positives = 221/480 (46%), Gaps = 61/480 (12%)

Query: 102 IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC 161
           ++  M+ S  +P  +    LL+ + +   V + ++L   +     +     +  LI+ YC
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIP----NPDAIARTTLITAYC 90

Query: 162 LCGEVDMARGIFDVS--YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
             G +++ R IF+ +  Y  D V +NAM +GY          +LF  M R    P   T 
Sbjct: 91  ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTF 150

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI------LENALTDMYA--------ACG 265
             VLSA      L VG         C +V   +      + NAL  +Y          C 
Sbjct: 151 TSVLSALV----LFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCS 206

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            M  A ++F  +  +D ++WT ++TGY+    ++ AR+ F+ M E     W AMI GY+ 
Sbjct: 207 AMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVH 266

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND--- 382
              F+EALTL R+M+   I+ D+ T  +I++ACAN+G+ ++G+ +  YI KN++  +   
Sbjct: 267 CGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSF 326

Query: 383 -IFVGNALIDMYCK-------------------------------CGDVEKAQRVFREML 410
            + V NALI +YCK                                G +E+A+  F EM 
Sbjct: 327 CLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMP 386

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            K+  T T MI GLA NG GD+ L +F QM      P +  + G L+AC+  G ++ GR+
Sbjct: 387 VKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQ 446

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
             A + +  G E + +    M+ +  + G +  A  V   MP   + + W +++ A   H
Sbjct: 447 LHAQL-VHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQH 504



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/523 (22%), Positives = 212/523 (40%), Gaps = 114/523 (21%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCCSEKGDMKYA 68
           P   T  + L + +    +  Q  Q+H   +K G+   + +V N L++       ++   
Sbjct: 145 PDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIP 204

Query: 69  C-------KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS------------ 109
           C       K+F ++P+     W TMI GY R D       ++  M+++            
Sbjct: 205 CSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGY 264

Query: 110 -------------------DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS- 149
                               ++ D+ T+  ++       + + GK++H ++LK   + + 
Sbjct: 265 VHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNH 324

Query: 150 ---VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY------KRVKQF--- 197
              + V NALI+ YC   +VD AR IF      +++TWNA+ SGY      +  K F   
Sbjct: 325 SFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEE 384

Query: 198 ----------------------DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
                                 DE  KLF +M   G  P        L+AC+ L  L+ G
Sbjct: 385 MPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENG 444

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           ++ H  +       +L + NA+  MYA CG +  A  +F  + + D++SW +++      
Sbjct: 445 RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQH 504

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G    A + FDQM +                                 + PD  T +++L
Sbjct: 505 GHGVKAIELFDQMLKE-------------------------------GVFPDRITFLTVL 533

Query: 356 TACANLGALELG-EWVKTYIDKNKVK--NDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           TAC++ G +E G  +  + ++   +    D +    ++D++C+ G    A+ V   M  K
Sbjct: 534 TACSHAGLVEKGRHYFNSMLESYGITPCEDHYA--RMVDLFCRAGMFSYARIVIDSMPSK 591

Query: 413 DKF-TWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYV 453
                W A++ G  I+G+ D  ++   Q+ +  ++P ++ TYV
Sbjct: 592 PGAPVWEALLAGCRIHGNMDLGIEAAEQLFK--LMPQNDGTYV 632


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/709 (36%), Positives = 395/709 (55%), Gaps = 49/709 (6%)

Query: 60  SEKGDMKYACKVFRKIP---RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
           S  G++K A ++F + P   R +V  +N MI GYS ++   + + ++  M  ++ +PD++
Sbjct: 90  SALGNLKMAREIFNETPLDMRDTV-FYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDF 148

Query: 117 TFPFLLKGFTRDIAVEFG-KELHCHVLKFGFDSSVFVQNALISTYCLC------------ 163
           TF  +L   T     E    ++H  V+KFG +    V NAL+S Y  C            
Sbjct: 149 TFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLM 208

Query: 164 ----------------------------GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
                                       G++  AR I D   +   + WNAM SGY    
Sbjct: 209 ASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHG 268

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN----L 251
            F++   LF +M   GV     T   V+SACA      +GK+ H Y+ + ++ P+    L
Sbjct: 269 LFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLL 328

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + N L  +Y   G++  A +IF  +  KD+I+W  +++GY+N G+++ A+ +F QMPE+
Sbjct: 329 SVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEK 388

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           + + WT MI G  +     +AL LF +M+     P+++     +TAC+ LGALE G  + 
Sbjct: 389 NLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLH 448

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
             I      + + VGNA+I MY +CG VE A+ +F  M   D  +W +MI  L  +GHG 
Sbjct: 449 AQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGV 508

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           K+++++ QML+  I+PD  T++ VLSAC+H G+V+EG  YF  M   +GI P E HY  M
Sbjct: 509 KAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARM 568

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           +DL  RAG  ++A  VI +MP +  + +W ALL  CR H + ++   AA+++ +L P ++
Sbjct: 569 IDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHD 628

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL N+YA+  RW++    R+++ DRG+KK P CS  E+   VH F+  D  HP+  
Sbjct: 629 GTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVL 688

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            IY  L+++  ++K +GY+PD   V  D+  E KE A+  HSEKLA+AFGL+    G T+
Sbjct: 689 SIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATV 748

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+ KNLR+C DCH   K +S V  RE++VRD  RFHHFK+G CSC++YW
Sbjct: 749 RVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 143/489 (29%), Positives = 224/489 (45%), Gaps = 57/489 (11%)

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKD--DVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           V  +  LI+ Y   G + MAR IF+ +  D  D V +NAM +GY  +       +LF  M
Sbjct: 79  VIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAM 138

Query: 208 ERKGVLPTSVTIVLVLSACAKL--KDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAAC 264
                 P   T   VLSA   +   +   G+     VK   +I P ++  NAL  +Y  C
Sbjct: 139 RWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVL--NALLSVYVKC 196

Query: 265 GE---------MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
                      M  A ++F  +  ++   WT ++TGY+  G +  AR+  D M E+  + 
Sbjct: 197 ASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIA 256

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           W AMI GYL    F +ALTLFR+M+   ++ DE T  S+++ACA+ G   LG+ V  YI 
Sbjct: 257 WNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYIL 316

Query: 376 KNKVKND----IFVGNALIDMYCKCGDVEKAQRVFREMLRKD------------------ 413
           KN++  D    + VGN LI +Y K G V+ A+++F EM  KD                  
Sbjct: 317 KNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRME 376

Query: 414 -------------KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
                          TWT MI GLA NG G+++L +F+QM      P++  + G ++AC+
Sbjct: 377 EAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACS 436

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
             G ++ GR+  A + +  G +   +    M+ +  R G +  A  +   MP   + + W
Sbjct: 437 VLGALENGRQLHAQI-VHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPVSW 494

Query: 521 GALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
            +++ A   H     A    +Q+L+  + PD      +L     A    +  R    M+ 
Sbjct: 495 NSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLE 554

Query: 579 DRGIKKTPG 587
           + GI   PG
Sbjct: 555 NYGI--APG 561



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 204/480 (42%), Gaps = 70/480 (14%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTF---CC-----SEKGDMKYACKVFRKIPRPSVCL 82
           Q  Q+H   +K G+   P V N L++    C      S    M  A K+F ++P+ +  +
Sbjct: 166 QCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFI 225

Query: 83  WNTMIKGYSR----------IDS---------------------HKNGVLIYLDMLKSDV 111
           W T+I GY R          +D+                      ++ + ++  M    V
Sbjct: 226 WTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGV 285

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF----DSSVFVQNALISTYCLCGEVD 167
           + D  T+  ++           GK++H ++LK       D  + V N LI+ Y   G+VD
Sbjct: 286 QVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVD 345

Query: 168 MARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
            AR IF      D++TWN + SGY    + +E +  F +M  K +L  +V I       +
Sbjct: 346 GARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMI-------S 398

Query: 228 KLKDLDVGKRAHRYVKECKI---VPNLILENALTDMYAACGEMGFALE--------IFGN 276
            L     G++A +   + K+    PN   + A      AC  +G ALE        I   
Sbjct: 399 GLAQNGFGEQALKLFNQMKLDGYEPN---DYAFAGAITACSVLG-ALENGRQLHAQIVHL 454

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
             +  +    A++T Y   G V+ AR  F  MP  D V W +MI    +     +A+ L+
Sbjct: 455 GHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELY 514

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCK 395
            +M    I PD  T +++L+AC++ G +E G  +  + ++   +         +ID++C+
Sbjct: 515 EQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCR 574

Query: 396 CGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYV 453
            G    A+ V   M        W A++ G   +G+ D  ++   ++ +  +IP  + TYV
Sbjct: 575 AGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFK--LIPQHDGTYV 632



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 159/345 (46%), Gaps = 60/345 (17%)

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP--ERD 312
           N L D+Y    +  +A ++F  I   DVI+ T ++T Y   G + MAR+ F++ P   RD
Sbjct: 52  NRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRD 111

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL--GALELGEWV 370
            V + AMI GY  +N    A+ LFR M+ +N +PD+FT  S+L+A   +     + G+  
Sbjct: 112 TVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMH 171

Query: 371 KTYIDKNKVKNDIF--VGNALIDMYCKCG---------DVEKAQRVFREMLRKDKFTWTA 419
            T +   K   +IF  V NAL+ +Y KC           +  A+++F EM ++++F WT 
Sbjct: 172 GTVV---KFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTT 228

Query: 420 MIVGLAING-----------------------------HG--DKSLDMFSQMLRASIIPD 448
           +I G   NG                             HG  + +L +F +M    +  D
Sbjct: 229 LITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVD 288

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY----GCMVDLLGRAGHLNEA 504
           E TY  V+SAC   G    G++  A   +++ + P+          ++ L  + G ++ A
Sbjct: 289 ESTYTSVISACADGGFFLLGKQVHA-YILKNELNPDRDFLLSVGNTLITLYWKYGKVDGA 347

Query: 505 LEVIKNMPMKPNSIVWGALL-GACRVHRDAE----MAEMAAKQIL 544
            ++   MP+K + I W  LL G     R  E     A+M  K +L
Sbjct: 348 RKIFYEMPVK-DIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLL 391


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/693 (35%), Positives = 394/693 (56%), Gaps = 32/693 (4%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S+ + K +H+  ++ G   +  +   LV    S+ G +  A KVF KI  P V  W+ MI
Sbjct: 66  SLREGKVLHALALRSGCEIDEFLGCSLVDMY-SKCGTVYDALKVFTKIRNPDVVAWSAMI 124

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
            G  +    +    ++  M +   RP+ +T   L+   T    + +G+ +H  + K+GF+
Sbjct: 125 TGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFE 184

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           S   V N LI  Y     V+    +F+     D+V+WNA+ SG+   +      ++F +M
Sbjct: 185 SDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQM 244

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
             +G  P   T + VL +C+ L D + GK+ H +                          
Sbjct: 245 LLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAH-------------------------- 278

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
                I  N  + D    TA+V  Y     ++ A   FD++  RD   WT +I GY + +
Sbjct: 279 -----IIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTD 333

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
           +  +A+  FR+MQ   I+P+E+T+ S L+ C+++  LE G  +     K     DIFVG+
Sbjct: 334 QAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGS 393

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           AL+D+Y KCG +E A+ +F+ ++ +D  +W  +I G + +G G+K+L+ F  ML   I+P
Sbjct: 394 ALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMP 453

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           DE T++GVLSAC+  G+V+EG++ F  M+  +GI P+  HY CMVD+LGRAG  NE    
Sbjct: 454 DEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIF 513

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           I+ M + P S++W  +LGAC++H + +  E AAK++ E++P  ++ Y+LL NI+A+  RW
Sbjct: 514 IEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRW 573

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           D+ R +R ++  RGIKK PGCS +E++G VH F++ D SHP+ +EIY KLD++   L  +
Sbjct: 574 DDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSI 633

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           GY+P    V  +V  ++K   +Y HSE+LA++F L+S+     IRI KNLR+C DCH   
Sbjct: 634 GYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFM 693

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KL+S + ++E++VRD  RFHHFK G+CSC+D W
Sbjct: 694 KLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 2/229 (0%)

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
           +++A + F  MPE++ V W A+++GY ++   ++ L LF +M+    +  +FT+ ++L  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
           CAN G+L  G+ +     ++  + D F+G +L+DMY KCG V  A +VF ++   D   W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           +AMI GL   GHG ++ ++F  M R    P++ T   ++S  T+ G +  G+     +  
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC- 179

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           ++G E +      ++ +  ++  + +  +V + M   P+ + W ALL  
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLSG 227


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/691 (38%), Positives = 390/691 (56%), Gaps = 51/691 (7%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G+ + A K+F ++P   +  WN MIKGY R  +      ++  M + DV     ++  +L
Sbjct: 109 GEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV----CSWNTML 164

Query: 123 KGFTRDIAVE-----FGKELHCHVLKFGFDSSVFVQN----------------ALISTYC 161
            G+ ++  V+     F +    + + +    S +VQN                AL+S  C
Sbjct: 165 SGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNC 224

Query: 162 LCG------EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
           L G      ++  AR  FD     DVV+WN + +GY +  + DE R+LF E   + V   
Sbjct: 225 LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTW 284

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV------PNLILENALTDMYAACGEMGF 269
           +  +               G   +R V+E + +       N +  NA+   Y     M  
Sbjct: 285 TAMVS--------------GYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEM 330

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           A E+F  +  ++V +W  ++TGY   G++  A+  FD+MP+RD V W AMI GY +    
Sbjct: 331 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 390

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
            EAL LF +M+    R +  +  S L+ CA++ ALELG+ +   + K   +   FVGNAL
Sbjct: 391 FEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNAL 450

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           + MYCKCG +E+A  +F+EM  KD  +W  MI G + +G G+ +L  F  M R  + PD+
Sbjct: 451 LLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDD 510

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
            T V VLSAC+HTG+VD+GR+YF  MT  +G+ PN  HY CMVDLLGRAG L +A  ++K
Sbjct: 511 ATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMK 570

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
           NMP +P++ +WG LLGA RVH + E+AE AA +I  ++P+N  +YVLL N+YA+  RW +
Sbjct: 571 NMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGD 630

Query: 570 FRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGY 629
             +LR  + D+G+KK PG S IE+    H F  GD+ HP+  EI+  L+E+   +K  GY
Sbjct: 631 VGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGY 690

Query: 630 MPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKL 689
           +   S V  DV EE+KER V  HSE+LA+A+G++    G  IR++KNLR+C DCH   K 
Sbjct: 691 VSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKY 750

Query: 690 VSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++ +  R +I+RD  RFHHFK GSCSC DYW
Sbjct: 751 MARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 185/411 (45%), Gaps = 43/411 (10%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N +IS Y   GE ++AR +FD   + D+V+WN M  GY R +   + R+LF  M  + V 
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158

Query: 214 PTSVTIV------------LVLSACAKLKDLDVGKRAHRYVKECKIVP-----------N 250
             +  +              V     +  D+        YV+  K+              
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           L+  N L   +    ++  A + F ++  +DV+SW  I+TGY   G++D ARQ FD+ P 
Sbjct: 219 LVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPV 278

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           +D   WTAM+ GY++     EA  LF +M   N    E +  ++L        +E+    
Sbjct: 279 QDVFTWTAMVSGYIQNRMVEEARELFDKMPERN----EVSWNAMLAGYVQGERMEM---A 331

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
           K   D    +N +   N +I  Y +CG + +A+ +F +M ++D  +W AMI G + +GH 
Sbjct: 332 KELFDVMPCRN-VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 390

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
            ++L +F QM R     +  ++   LS C     ++ G++    + ++ G E      GC
Sbjct: 391 FEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL-VKGGYET-----GC 444

Query: 491 MVD-----LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
            V      +  + G + EA ++ K M  K + + W  ++     H   E+A
Sbjct: 445 FVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEVA 494



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 149/333 (44%), Gaps = 27/333 (8%)

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N     Y   G    AL +F  +     +S+  +++GY+  G+ ++AR+ FD+MPERD V
Sbjct: 68  NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLV 127

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W  MI GY+R     +A  LF  M   ++     +  ++L+  A  G ++     ++  
Sbjct: 128 SWNVMIKGYVRNRNLGKARELFEIMPERDV----CSWNTMLSGYAQNGCVDD---ARSVF 180

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           D+   KND+   NAL+  Y +   +E+A  +F+        +W  ++ G        K +
Sbjct: 181 DRMPEKNDV-SWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFV----KKKKI 235

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
               Q   +  + D V++  +++    +G +DE R+ F +  +Q         +  MV  
Sbjct: 236 VEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT-----WTAMVSG 290

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP-DNEAV 553
             +   + EA E+   MP + N + W A+L     +   E  EM AK++ ++ P  N + 
Sbjct: 291 YIQNRMVEEARELFDKMPER-NEVSWNAMLAG---YVQGERMEM-AKELFDVMPCRNVST 345

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTP 586
           +  +   YA C +    + L     D+  K+ P
Sbjct: 346 WNTMITGYAQCGKISEAKNL----FDKMPKRDP 374


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/692 (38%), Positives = 385/692 (55%), Gaps = 42/692 (6%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
            +H+   KLG  ++  V   L+  C S  G  + A +VF  I    +  W  M+  Y   
Sbjct: 166 SVHACVYKLGFDSDAFVGTALID-CYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVEN 224

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           +  +  + ++  M     +P+N+TF  +LK          GK +H    K  +   +FV 
Sbjct: 225 ECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVG 284

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
             LI  Y   G+VD A  +F+   KDDV+ W+ M + Y + +Q +E  ++F  M R  VL
Sbjct: 285 VELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVL 344

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P   T+  +L ACA L DL +G + H +V +  +  N+ + NAL DMYA CG M  +L  
Sbjct: 345 PNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSL-- 402

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                                        Q F + P    V W  +I GY++     +AL
Sbjct: 403 -----------------------------QLFSESPNCTDVSWNTVIVGYVQAGNGEKAL 433

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEW-----VKTYIDKNKVKNDIFVGNA 388
            LF++M    ++  E T  S+L ACA + ALE G       VKT  DKN V     VGNA
Sbjct: 434 ILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTV-----VGNA 488

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDMY KCG+++ A+ VF  +   D+ +W AMI G +++G   ++L  F  ML     PD
Sbjct: 489 LIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPD 548

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
           +VT+VG+LSAC++ G++D G+ YF  M  ++ IEP   HY CMV LLGR+GHL++A +++
Sbjct: 549 KVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLV 608

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
             +P +P+ +VW ALL AC +H D E+  ++A+++LE++P++EA +VLL NIYA   RW 
Sbjct: 609 HEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWG 668

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
           N   +R  +  +GI+K PG S IE  G VH F  GD SHP TK I   L+ +    +  G
Sbjct: 669 NVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKARNEG 728

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           Y+PD S V LDV + DKE+ ++ HSE+LA+A+GLI +     +RI+KNLR+C DCH   K
Sbjct: 729 YVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRICADCHAAIK 788

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           L+S +  R++I+RD  RFHHF  G CSC DYW
Sbjct: 789 LISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 131/542 (24%), Positives = 232/542 (42%), Gaps = 90/542 (16%)

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           + Y +  LL+   R+     GK LHC ++K G    +F  N L++ Y     +  A  +F
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG--VLPTSVTIVLVLSACAKLKD 231
           D     + V++  +  GY +  +F E   LF  ++ +G  + P   + VL L   A+   
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           L  G   H  V +     +  +  AL D Y+ CG    A ++F  I+ KD++SWT +V  
Sbjct: 163 L--GFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVAC 220

Query: 292 YINRGQVDMARQYFDQM------PE---------------------------------RD 312
           Y+     + + + F +M      P                                   +
Sbjct: 221 YVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEE 280

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSN----------------------------- 343
             +   +ID Y++     +AL +F EM   +                             
Sbjct: 281 LFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRR 340

Query: 344 --IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             + P++FT+ S+L ACA+L  L+LG  +  ++ K  +  ++FV NAL+DMY KCG +E 
Sbjct: 341 GLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMEN 400

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           + ++F E       +W  +IVG    G+G+K+L +F  ML   +   EVTY  VL AC  
Sbjct: 401 SLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAG 460

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
              ++ G +  + ++++   + N      ++D+  + G++ +A  ++ +M  + + + W 
Sbjct: 461 IAALEPGSQIHS-LSVKTIYDKNTVVGNALIDMYAKCGNIKDA-RLVFDMLREHDQVSWN 518

Query: 522 ALLGACRVHRDAEMAEMAAKQILELD--PDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           A++    VH     A    + +LE +  PD     V    I +AC+           +LD
Sbjct: 519 AMISGYSVHGLYGEALKTFESMLETECKPDK----VTFVGILSACS--------NAGLLD 566

Query: 580 RG 581
           RG
Sbjct: 567 RG 568



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 160/344 (46%), Gaps = 9/344 (2%)

Query: 12  TLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
            L  +  L S ++ C S+  L+   QIH   +K+GL  N  V N L+    ++ G M+ +
Sbjct: 343 VLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDM-YAKCGRMENS 401

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            ++F + P  +   WNT+I GY +  + +  ++++ DML+  V+    T+  +L+     
Sbjct: 402 LQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGI 461

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            A+E G ++H   +K  +D +  V NALI  Y  CG +  AR +FD+  + D V+WNAM 
Sbjct: 462 AALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMI 521

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR-YVKECKI 247
           SGY     + E  K F  M      P  VT V +LSAC+    LD G+   +  V+E  I
Sbjct: 522 SGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDI 581

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMAR---Q 303
            P       +  +    G +  A ++   I     V+ W A+++  +    V++ R   Q
Sbjct: 582 EPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQ 641

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
              ++   D      + + Y    R+    ++   M+   IR +
Sbjct: 642 RVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKE 685



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 161/369 (43%), Gaps = 63/369 (17%)

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           D+ +   ++  Y+    +  A + FD+MP+R+ V +  +I GY +  RF EA+ LF  +Q
Sbjct: 78  DLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQ 137

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
                 + F   ++L    +    +LG  V   + K    +D FVG ALID Y  CG  E
Sbjct: 138 GEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAE 197

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
            A++VF  +  KD  +WT M+     N   ++SL +FS+M      P+  T+  VL AC 
Sbjct: 198 CARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACV 257

Query: 461 HTGMVDEGR---------EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
              + + G+          Y  ++ +  G+E        ++DL  ++G +++AL+V + M
Sbjct: 258 GLEVFNVGKAVHGCAFKTSYLEELFV--GVE--------LIDLYIKSGDVDDALQVFEEM 307

Query: 512 P----------------------------------MKPNSIVWGALLGACRVHRDAEMAE 537
           P                                  + PN     +LL AC    D ++  
Sbjct: 308 PKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGN 367

Query: 538 MAAKQILELDPD-NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
                ++++  D N  V   L ++YA C R +N  +L          ++P C+ +  N V
Sbjct: 368 QIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQL--------FSESPNCTDVSWNTV 419

Query: 597 VHEFV-AGD 604
           +  +V AG+
Sbjct: 420 IVGYVQAGN 428


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/472 (47%), Positives = 317/472 (67%)

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
           P++    A+   +A  G++  A ++F  +  K ++S TA++T Y   G++D AR  FD M
Sbjct: 91  PSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGM 150

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
            ERD V W  MIDGY +     EAL LFR M  +  +P+E T++S+L+AC  LGALE G 
Sbjct: 151 EERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR 210

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           WV +YI+ N ++ ++ VG AL+DMY KCG +E A+ VF ++  KD   W +MIVG A++G
Sbjct: 211 WVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHG 270

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
              ++L +F  M R  + P  +T++G+LSAC H+G V EG + F  M  ++GIEP   HY
Sbjct: 271 FSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHY 330

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
           GCMV+LLGRAGH+ +A E++KNM ++P+ ++WG LLGACR+H    + E   + +++ + 
Sbjct: 331 GCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNL 390

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
            N   Y+LL NIYAA   WD    LR M+ D G+KK PGCS IE+N  VHEF+AG  +HP
Sbjct: 391 ANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHP 450

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPG 668
           + KEIY+ L+E+   LK  GY P    V  D+GE +KER++  HSEKLA+AFGLI++ PG
Sbjct: 451 KRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPG 510

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            TI+IVKNLR+C DCH + KL+S +  R+++VRD+ RFHHF +GSCSC DYW
Sbjct: 511 TTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 174/414 (42%), Gaps = 85/414 (20%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           I+  +++  L QIH+   + GL  +P +  KL     S  G + Y+  +F +   PSV  
Sbjct: 37  IDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYAS-LGRLDYSVALFGRTQNPSVFF 95

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           W  +I G++               L+ DV      F  +                     
Sbjct: 96  WTAIIHGHA---------------LRGDVVSAQQLFDTMP-------------------- 120

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
               + S+    A+++ Y   GE+D AR +FD   + D V WN M  GY +    +E   
Sbjct: 121 ----EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 176

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           LF  M +    P  VT++ VLSAC +L  L+ G+  H Y++   I  N+ +  AL DMY+
Sbjct: 177 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYS 236

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG +  A  +F  I +KDV++W +++ GY   G        F Q               
Sbjct: 237 KCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHG--------FSQ--------------- 273

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKN 381
                   EAL LF+ M    + P   T + IL+AC + G      WV    D  NK+K+
Sbjct: 274 --------EALQLFKSMCRMGLHPTNITFIGILSACGHSG------WVTEGWDIFNKMKD 319

Query: 382 DIFVG------NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
           +  +         ++++  + G VE+A  + + M +  D   W  ++    ++G
Sbjct: 320 EYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHG 373



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 123/258 (47%), Gaps = 4/258 (1%)

Query: 58  CCSEKGDMKYACKVFRKIP-RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
           C ++ G++  A  +F  +  R  VC WN MI GY++       ++++  MLK+  +P+  
Sbjct: 133 CYAKHGELDAARVLFDGMEERDGVC-WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEV 191

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           T   +L    +  A+E G+ +H ++   G   +V V  AL+  Y  CG ++ AR +FD  
Sbjct: 192 TVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKI 251

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
              DVV WN+M  GY       E  +LF  M R G+ PT++T + +LSAC     +  G 
Sbjct: 252 DDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGW 311

Query: 237 RAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYIN 294
                +K E  I P +     + ++    G +  A E+  N+    D + W  ++     
Sbjct: 312 DIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRL 371

Query: 295 RGQVDMARQYFDQMPERD 312
            G++ +  +  + + +++
Sbjct: 372 HGKIALGEKIVELLVDQN 389


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/600 (38%), Positives = 368/600 (61%), Gaps = 8/600 (1%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           +F++SS++P S    +  +        S    K++H+  I+  L T+P + + ++     
Sbjct: 10  LFTSSSMAPKSGRVSKNSI--------STDTSKELHAHLIRTQLHTDPFLMSDVIRSYSL 61

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
              ++  A  VF +I  P++ +WN MI+G S+ D     + +Y  M    +  +N T  F
Sbjct: 62  SSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIF 121

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           L K   R   +  G+++H H LK GF+S +FV NALI  Y +CG++  A+ +FD     D
Sbjct: 122 LFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRD 181

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           +V+WN +  GY +  ++ E  +LF  M    +   +VT+V ++ AC+ L D +      +
Sbjct: 182 LVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVK 241

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           Y+KE  +  ++ L N L DMY        A  +F  ++ ++++SW A+V G+   G +  
Sbjct: 242 YIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTA 301

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           AR+ FD MP+RD + WT+MI GY + ++F +A+ LF+EM  + ++PD+ T+ S+L+ACA+
Sbjct: 302 ARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAH 361

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           LG L++G  V  YI ++ V+ DI+VGN+LIDMYCKCG VEKA  VF  M  KD  +WT++
Sbjct: 362 LGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSV 421

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I GLA+NG  + +LD+FSQMLR  + P   T+VG+L AC H G+V++G EYF  M   HG
Sbjct: 422 ISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHG 481

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           + P   HYGC+VDLL R+G++++A E IK MP+ P+ +VW  LL AC++H +  +AE+A 
Sbjct: 482 LVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIAT 541

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
           K++LELDP +   YVLL N YA  +RWD+  ++R+++ D  ++K  G S IE++G+V  +
Sbjct: 542 KRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNY 601


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/684 (36%), Positives = 385/684 (56%), Gaps = 62/684 (9%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A K+F ++P  +   + T+I+GY+        + +++ + +     + + F  +LK    
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVS 151

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
               E G  +H  + K G +S+ FV  ALI  Y +CG VD+AR +FD     D+V+W  M
Sbjct: 152 TDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGM 211

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            + +     F E  KLF +M   G  P + T   V  AC  L+  DVGK  H    + + 
Sbjct: 212 VTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRY 271

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             +L +  AL D+Y   G+                               +D AR+ F++
Sbjct: 272 ELDLYVGVALLDLYTKSGD-------------------------------IDDARRAFEE 300

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           +P++D + W+ MI  Y + ++ +EA+ +F +M+ + + P++FT  S+L ACA +  L LG
Sbjct: 301 IPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLG 360

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
             +  ++ K  + +D+FV NAL+D+Y KCG +E +  +F E   ++  TW  +IVG    
Sbjct: 361 NQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQL 420

Query: 428 GHGDKSLDMF---------------SQMLRA----------------SIIPDEVTYVGVL 456
           G G+K+L +F               S  LRA                ++ PD++T+VGVL
Sbjct: 421 GDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVL 480

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC + G++D+G+ YF  M   HGIEP   HY CMV LLGR GHL++A+++I  +P +P+
Sbjct: 481 SACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPS 540

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
            +VW ALLGAC +H D E+  ++A+++LE++P ++A +VLL N+YA   RWDN   +R+ 
Sbjct: 541 VMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKN 600

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           +  +G+KK PG S IE  G VH F  GD SHP+ + I   L+ +    K  GY+P+ + V
Sbjct: 601 MKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVV 660

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
            LDV +E+KER ++ HSE+LA++FG+I +  G  IRI+KNLR+CVDCH   K +S V  R
Sbjct: 661 LLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQR 720

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           E++VRD  RFHHF+ G CSC DYW
Sbjct: 721 EIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 192/396 (48%), Gaps = 43/396 (10%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK LHC +LK G    +F  N L++ Y     +  A  +FD   + + +++  +  GY  
Sbjct: 57  GKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAE 116

Query: 194 VKQFDETRKLFGEMERKG-----VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
             +F E  +LF  + R+G      + T++  +LV + C +L     G   H  + +    
Sbjct: 117 SVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGEL-----GWGIHACIFKLGHE 171

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            N  +  AL D Y+ CG +  A E+F  I  KD++SWT +VT +                
Sbjct: 172 SNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCF---------------- 215

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
            E D                F+EAL LF +M+    +P+ FT  S+  AC  L A ++G+
Sbjct: 216 AENDC---------------FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGK 260

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            V     K++ + D++VG AL+D+Y K GD++ A+R F E+ +KD   W+ MI   A + 
Sbjct: 261 SVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSD 320

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
              ++++MF QM +A ++P++ T+  VL AC     ++ G +    + I+ G+  +    
Sbjct: 321 QSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHV-IKIGLHSDVFVS 379

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
             ++D+  + G +  ++E+    P + N + W  ++
Sbjct: 380 NALMDVYAKCGRMENSMELFAESPHR-NDVTWNTVI 414



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 203/422 (48%), Gaps = 6/422 (1%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IH+   KLG  +N  V   L+    S  G +  A +VF  I    +  W  M+  ++  D
Sbjct: 161 IHACIFKLGHESNAFVGTALID-AYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAEND 219

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
             K  + ++  M     +P+N+TF  + K      A + GK +H   LK  ++  ++V  
Sbjct: 220 CFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGV 279

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           AL+  Y   G++D AR  F+   K DV+ W+ M + Y +  Q  E  ++F +M +  VLP
Sbjct: 280 ALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLP 339

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
              T   VL ACA ++ L++G + H +V +  +  ++ + NAL D+YA CG M  ++E+F
Sbjct: 340 NQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELF 399

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
               +++ ++W  ++ G++  G  + A + F  M E             LR      AL 
Sbjct: 400 AESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALE 459

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMY 393
              ++ +  ++PD+ T V +L+ACAN G L+ G+ +  + I  + ++  I     ++ + 
Sbjct: 460 PGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLL 519

Query: 394 CKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVT 451
            + G ++KA ++  E+  +     W A++    I  H D  L   S      + P D+ T
Sbjct: 520 GRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVI--HNDIELGRISAQRVLEMEPQDKAT 577

Query: 452 YV 453
           +V
Sbjct: 578 HV 579



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 126/287 (43%), Gaps = 22/287 (7%)

Query: 12  TLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
            L  +    S ++ C +M  L    QIH   IK+GL ++  V N L+    ++ G M+ +
Sbjct: 337 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDV-YAKCGRMENS 395

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            ++F + P  +   WNT+I G+ ++   +  + ++L+ML+  V+    T+   L+     
Sbjct: 396 MELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASL 455

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT----- 183
            A+E G ++H   +K   D   FV   ++S     G +D  +  F    +D  +      
Sbjct: 456 AALEPGLQIHSLTVK--PDKLTFV--GVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEH 511

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           +  M     R    D+  KL  E+  +   P+ +    +L AC    D+++G+ + + V 
Sbjct: 512 YTCMVWLLGRGGHLDKAVKLIDEIPFQ---PSVMVWRALLGACVIHNDIELGRISAQRVL 568

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV-----ISW 285
           E +   +      L++MYA          +  N+K K V     +SW
Sbjct: 569 EME-PQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSW 614


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/687 (37%), Positives = 402/687 (58%), Gaps = 33/687 (4%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           +H+   KLG   +  V   L+    S  G++  A +VF  I    +  W  M+  Y+   
Sbjct: 126 VHAYVYKLGHQADAFVGTALID-AYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENY 184

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
            H++ +L++  M     RP+N+T    LK      A + GK +H   LK  +D  ++V  
Sbjct: 185 CHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGI 244

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL- 213
           AL+  Y   GE+  A+  F+   KDD++ W+ M S Y +  +  E  +LF  M +  V+ 
Sbjct: 245 ALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVV 304

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P + T   VL ACA L  L++G + H  V +  +  N+ + NAL D+YA CGE+  ++++
Sbjct: 305 PNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKL 364

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F               TG                  E++ V W  +I GY+++    +AL
Sbjct: 365 F---------------TG----------------STEKNEVAWNTIIVGYVQLGDGEKAL 393

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LF  M   +I+P E T  S+L A A+L ALE G  + +   K     D  V N+LIDMY
Sbjct: 394 NLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMY 453

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KCG ++ A+  F +M ++D+ +W A+I G +I+G G ++L++F  M +++  P+++T+V
Sbjct: 454 AKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFV 513

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
           GVLSAC++ G++D+GR +F  M   +GIEP   HY CMV LLGR+G  +EA+++I  +P 
Sbjct: 514 GVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPF 573

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           +P+ +VW ALLGAC +H++ ++ ++ A+++LE++P ++A +VLL N+YA   RWDN   +
Sbjct: 574 QPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYV 633

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R+ +  + +KK PG S +E  GVVH F  GD SHP  K I+  L+ +    +  GY+PD 
Sbjct: 634 RKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDC 693

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
           S V LDV +++KER ++ HSE+LA+AFGLI    G +IRI+KNLR+CVDCH + KLVS +
Sbjct: 694 SVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKLVSKI 753

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
             RE+++RD  RFHHF+ G CSC DYW
Sbjct: 754 VQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 141/499 (28%), Positives = 235/499 (47%), Gaps = 35/499 (7%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K +H   +K G   +   QN L+       G ++ A K+F ++P  +   + T+ +G+SR
Sbjct: 23  KSLHCHILKHGASLDLFAQNILLN-TYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               +    + L + +     + + F  LLK        +    +H +V K G  +  FV
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFV 141

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             ALI  Y +CG VD AR +FD  Y  D+V+W  M + Y      +++  LF +M   G 
Sbjct: 142 GTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGY 201

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P + TI   L +C  L+   VGK  H    +     +L +  AL ++Y   GE+  A +
Sbjct: 202 RPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQ 261

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
            F  +   D+I W                               + MI  Y + ++ +EA
Sbjct: 262 FFEEMPKDDLIPW-------------------------------SLMISRYAQSDKSKEA 290

Query: 333 LTLF-REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           L LF R  Q+S + P+ FT  S+L ACA+L  L LG  + + + K  + +++FV NAL+D
Sbjct: 291 LELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMD 350

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           +Y KCG++E + ++F     K++  W  +IVG    G G+K+L++FS ML   I P EVT
Sbjct: 351 VYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVT 410

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           Y  VL A      ++ GR+  + +TI+     +      ++D+  + G +++A      M
Sbjct: 411 YSSVLRASASLVALEPGRQIHS-LTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKM 469

Query: 512 PMKPNSIVWGALLGACRVH 530
             K + + W AL+    +H
Sbjct: 470 D-KQDEVSWNALICGYSIH 487


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/582 (41%), Positives = 368/582 (63%), Gaps = 8/582 (1%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRP 78
           IS +++C+SM QLKQI +     GL  +  + NKL+ F   S  GD  YA ++F  I  P
Sbjct: 12  ISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHP 71

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           S+ ++N MIK + +  S ++ + ++  + +  V PDNYT+P++LKG      V  G+++H
Sbjct: 72  SLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIH 131

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
             V+K G +   +V N+L+  Y   G V+    +F+   + D V+WN M SGY R K+F+
Sbjct: 132 AFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFE 191

Query: 199 ETRKLFGEME-RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENA 256
           E   ++  M+      P   T+V  LSACA L++L++GK  H Y+  E  + P  I+ NA
Sbjct: 192 EAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTP--IMGNA 249

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L DMY  CG +  A EIF  +  K+V  WT++VTGY+  GQ+D AR  F++ P RD VLW
Sbjct: 250 LLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLW 309

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           TAMI+GY++ N F +A+ LF EMQ   + PD+F +V++LT CA LGALE G+W+  YID+
Sbjct: 310 TAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDE 369

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           N++K D  V  ALI+MY KCG +EK+  +F  +   D  +WT++I GLA+NG   ++L++
Sbjct: 370 NRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALEL 429

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F  M    + PD++T+V VLSAC H G+V+EGR+ F  M+  + IEPN  HYGC +DLLG
Sbjct: 430 FEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLG 489

Query: 497 RAGHLNEALEVIKNMPMKPNSIV---WGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           RAG L EA E++K +P + N I+   +GALL ACR + + +M E  A  + ++   + ++
Sbjct: 490 RAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSL 549

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
           + LL +IYA+ +RW++ R++R  + D GIKK PG S IE++G
Sbjct: 550 HTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG 591


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/680 (38%), Positives = 377/680 (55%), Gaps = 62/680 (9%)

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLL 122
           ++  A ++F ++P   VC WNT++ GY++     +   ++  M  K+DV  +     ++ 
Sbjct: 136 NLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQ 195

Query: 123 KGFTRDIAVEFGKELHCHVLKFG------------------FDS----SVFVQNALISTY 160
                +  V FG   +  ++ +                   FDS     V   N +I+ Y
Sbjct: 196 NSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGY 255

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
              GE+D AR +FD S   DV TW AM SGY + +  +E R+LF  M  +          
Sbjct: 256 AQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER---------- 305

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
                                        N +  NA+   Y     +  A E+F  +  +
Sbjct: 306 -----------------------------NEVSWNAMLAGYVQGERVEMAKELFDVMPCR 336

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +V +W  ++TGY   G++  A+  FD+MP+RD V W AMI GY +     EAL LF  M+
Sbjct: 337 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLME 396

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
               R +  +  S L+ CA++ ALELG+ +   + K   +   FVGNAL+ MYCKCG +E
Sbjct: 397 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 456

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
           +A  +F+EM  KD  +W  MI G + +G G+++L  F  M R  + PD+ T V VLSAC+
Sbjct: 457 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACS 516

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           HTG+VD+GR+YF  MT  +G+ PN  HY CMVDLLGRAG L EA  ++KNMP +P++ +W
Sbjct: 517 HTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIW 576

Query: 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
           G LLGA RVH + E+AE AA +I  ++P+N  +YVLL N+YA+  RW +  +LR  + D+
Sbjct: 577 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 636

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
           G+KK PG S IE+    H F  GD+ HP+  EI+  L+++   +K  GY+   S V  DV
Sbjct: 637 GVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDV 696

Query: 641 GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIV 700
            EE+KER V  HSE+LA+A+G++    G  IR++KNLR+C DCH   K ++ V  R +I+
Sbjct: 697 EEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIIL 756

Query: 701 RDKTRFHHFKHGSCSCKDYW 720
           RD  RFHHFK GSCSC DYW
Sbjct: 757 RDNNRFHHFKDGSCSCGDYW 776



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 222/495 (44%), Gaps = 73/495 (14%)

Query: 47  NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM 106
           N  + + + T  CSE      A +VF+++PR S   +N MI GY R    +   +++ +M
Sbjct: 63  NVAISSYMRTGRCSE------ALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEM 116

Query: 107 LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166
            + D+     ++  ++KG+ R+  +   +EL   +     +  V   N ++S Y   G V
Sbjct: 117 PERDL----VSWNVMIKGYVRNRNLGKARELFERMP----ERDVCSWNTILSGYAQNGCV 168

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
           D AR +FD   + + V+WNA+ S Y +  + +E   LFG  E   ++  +  +       
Sbjct: 169 DDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLL------- 221

Query: 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWT 286
                         +VK+ KIV                     A + F ++K +DV+SW 
Sbjct: 222 ------------GGFVKKKKIVE--------------------ARQFFDSMKVRDVVSWN 249

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
            I+TGY   G++D ARQ FD+ P  D   WTAM+ GY++     EA  LF  M   N   
Sbjct: 250 TIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERN--- 306

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
            E +  ++L        +E+    K   D    +N +   N +I  Y +CG + +A+ +F
Sbjct: 307 -EVSWNAMLAGYVQGERVEM---AKELFDVMPCRN-VSTWNTMITGYAQCGKISEAKNLF 361

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
            +M ++D  +W AMI G + +GH  ++L +F  M R     +  ++   LS C     ++
Sbjct: 362 DKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALE 421

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVD-----LLGRAGHLNEALEVIKNMPMKPNSIVWG 521
            G++    + ++ G E      GC V      +  + G + EA ++ K M  K + + W 
Sbjct: 422 LGKQLHGRL-VKGGYET-----GCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWN 474

Query: 522 ALLGACRVHRDAEMA 536
            ++     H   E A
Sbjct: 475 TMIAGYSRHGFGEEA 489



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 172/382 (45%), Gaps = 61/382 (15%)

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
           DS +   N  IS+Y   G    A  +F    +   V++NAM SGY R  +F+  R LF E
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M  +                                       +L+  N +   Y     
Sbjct: 116 MPER---------------------------------------DLVSWNVMIKGYVRNRN 136

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +G A E+F  +  +DV SW  I++GY   G VD AR+ FD+MPE++ V W A++  Y++ 
Sbjct: 137 LGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQN 196

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV--KTYIDKNKVKNDIF 384
           ++  EA  LF   +        + +VS    C   G ++  + V  + + D  KV+ D+ 
Sbjct: 197 SKLEEACVLFGSREN-------WALVSW--NCLLGGFVKKKKIVEARQFFDSMKVR-DVV 246

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
             N +I  Y + G++++A+++F E    D FTWTAM+ G   N   +++ ++F +M    
Sbjct: 247 SWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER- 305

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
              +EV++  +L+       V+  +E F  M  +     N + +  M+    + G ++EA
Sbjct: 306 ---NEVSWNAMLAGYVQGERVEMAKELFDVMPCR-----NVSTWNTMITGYAQCGKISEA 357

Query: 505 LEVIKNMPMKPNSIVWGALLGA 526
             +   MP K + + W A++  
Sbjct: 358 KNLFDKMP-KRDPVSWAAMIAG 378



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 128/264 (48%), Gaps = 3/264 (1%)

Query: 47  NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM 106
           N +  N ++T   ++ G +  A  +F K+P+     W  MI GYS+       + +++ M
Sbjct: 337 NVSTWNTMIT-GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLM 395

Query: 107 LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166
            +   R +  +F   L      +A+E GK+LH  ++K G+++  FV NAL+  YC CG +
Sbjct: 396 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 455

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
           + A  +F      D+V+WN M +GY R    +E  + F  M+R+G+ P   T+V VLSAC
Sbjct: 456 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSAC 515

Query: 227 AKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVIS 284
           +    +D G++  H   ++  + PN      + D+    G +  A  +  N+    D   
Sbjct: 516 SHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAI 575

Query: 285 WTAIVTGYINRGQVDMARQYFDQM 308
           W  ++      G  ++A    D++
Sbjct: 576 WGTLLGASRVHGNTELAETAADKI 599



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 138/337 (40%), Gaps = 52/337 (15%)

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
           + D+  W   ++ Y+  G+   A + F +MP    V + AMI GYLR   F  A  LF E
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 339 MQTSNIRPDEFTIVSILTACANLG-ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
           M   ++      I   +    NLG A EL E +         + D+   N ++  Y + G
Sbjct: 116 MPERDLVSWNVMIKGYVRN-RNLGKARELFERMP--------ERDVCSWNTILSGYAQNG 166

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS------------------- 438
            V+ A+RVF  M  K+  +W A++     N   +++  +F                    
Sbjct: 167 CVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVK 226

Query: 439 --------QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
                   Q   +  + D V++  +++     G +DE R+ F D +  H +      +  
Sbjct: 227 KKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLF-DESPVHDV----FTWTA 281

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP-D 549
           MV    +   + EA E+   MP + N + W A+L     +   E  EM AK++ ++ P  
Sbjct: 282 MVSGYIQNRMVEEARELFDRMPER-NEVSWNAMLAG---YVQGERVEM-AKELFDVMPCR 336

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTP 586
           N + +  +   YA C +    + L     D+  K+ P
Sbjct: 337 NVSTWNTMITGYAQCGKISEAKNL----FDKMPKRDP 369


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/662 (38%), Positives = 379/662 (57%), Gaps = 4/662 (0%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD   A ++F  IP+P     +T+I   +        + IY  + +  ++PD   F    
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K           KE+H    + G  S VFV NALI  Y  C  V+ AR +FD     DVV
Sbjct: 172 KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 231

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +W ++ S Y +     +   +F EM   GV P  +T+  +L ACA+LKDL  GK  H + 
Sbjct: 232 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFA 291

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
               +V NL + +AL  +YA C  +  A  +F  + ++DV+SW  ++T Y    + +   
Sbjct: 292 VRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGF 351

Query: 303 QYFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
             F +M       D   W A+I G +   R  EA+ +FR+MQ    +P+E TI SIL AC
Sbjct: 352 SLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPAC 411

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           +    L +G+ +  Y+ ++    D+    AL+ MY KCGD+  ++ VF  M RKD   W 
Sbjct: 412 SFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWN 471

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
            MI+  A++G+G ++L +F +ML + + P+ VT+ GVLS C+H+ +V+EG + F  M   
Sbjct: 472 TMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRD 531

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           H +EP+  HY C+VD+  RAG LNEA + I+ MPM+P +  WGALL ACRV+++ E+A++
Sbjct: 532 HLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKI 591

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           +AK++ E++P+N   YV L NI      W    ++R ++ +RGI KTPGCS +++   VH
Sbjct: 592 SAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVH 651

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
            FV GDKS+ ++ +IY  LDE+   +K  GY PD   V  D+ +E+K  ++  HSEKLA+
Sbjct: 652 TFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAV 711

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           AFG+++     TIR+ KNLR+C DCH   K +S V    ++VRD  RFHHFK+G+CSCKD
Sbjct: 712 AFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKD 771

Query: 719 YW 720
            W
Sbjct: 772 LW 773



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 4/235 (1%)

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
           +N G  + ARQ FD +P+ D    + +I          EA+ ++  +Q   I+PD    +
Sbjct: 109 LNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFL 168

Query: 353 SILTACANLG-ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           +   ACA  G AL + E V     +  V +D+FVGNALI  Y KC  VE A+RVF +++ 
Sbjct: 169 AAAKACAVSGDALRVKE-VHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVV 227

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           +D  +WT++       G   K +D+F +M  + + P+ +T   +L AC     +  G+E 
Sbjct: 228 RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEI 287

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
                ++HG+  N      +V L  +   + EA  V   MP + + + W  +L A
Sbjct: 288 HG-FAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLTA 340



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 44/92 (47%)

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           +G  LI +    GD  +A+++F  + + D  T + +I  L  +G  ++++ ++S +    
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           I PD   ++    AC  +G     +E   D T
Sbjct: 160 IKPDMPVFLAAAKACAVSGDALRVKEVHDDAT 191


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/715 (35%), Positives = 403/715 (56%), Gaps = 39/715 (5%)

Query: 13  LTQETP----LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM 65
           L+  TP    + S +  C S+  L   KQ+HS  +K G+  +  ++  L+     + G +
Sbjct: 237 LSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYV-KCGVI 295

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             A ++F+   R +V LWN M+  Y +I        ++  M+ + VRP+ +T+P LL+  
Sbjct: 296 VEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTC 355

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
           T    +  G+++H   +K GF+S ++V   LI  Y   G +D AR I +V    DVV+W 
Sbjct: 356 TYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWT 415

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           +M +GY + +   E  + F +M+  G+ P ++ +   +SACA +K +  G++ H  V   
Sbjct: 416 SMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRV--- 472

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
                          Y+A                 DV  W A+V  Y   G+   A   F
Sbjct: 473 -----------YVSGYSA-----------------DVSIWNALVNLYARCGRSKEAFSLF 504

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
           + +  +D + W  M+ G+ +   + EAL +F +M  + ++ + FT VS ++A ANL  ++
Sbjct: 505 EAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIK 564

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            G+ +   + K    ++  V NALI +Y KCG +E A+  F EM  ++  +W  +I   +
Sbjct: 565 QGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCS 624

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            +G G ++LD+F QM +  + P++VT++GVL+AC+H G+V+EG  YF  M+ +HGI P  
Sbjct: 625 QHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRP 684

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HY C+VD+LGRAG L+ A + ++ MP+  N++VW  LL ACRVH++ E+ E+AAK +LE
Sbjct: 685 DHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLE 744

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           L+P + A YVLL N YA   +W     +R+M+ DRG++K PG S IE+  VVH F  GD+
Sbjct: 745 LEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDR 804

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
            HP   +IY  L ++   L  +GY+     +F +  +E K+   + HSEKLA+AFGL+S 
Sbjct: 805 LHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSL 864

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            P + +R++KNLR+C DCH   K  S V  RE+++RD  RFHHF +G+CSC D+W
Sbjct: 865 PPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 139/490 (28%), Positives = 231/490 (47%), Gaps = 34/490 (6%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IH++ I  GL  +    N L+    ++KG ++ A +VF ++       W  M+ GY+R  
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLY-AKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
             +  V +Y  M  S V P  Y    +L   T+    E G+ +H  V K G  S   V N
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           ALI+ Y   G + +A  +F      D VT+N + S + +    +   ++F EM   G  P
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
             VTI  +L+ACA + DL+ GK+ H Y+ +  + P+ I+E +L D+Y  CG +  ALEIF
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIF 302

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
            +    +V+ W  ++  Y   GQ+    + FD                            
Sbjct: 303 KSGDRTNVVLWNLMLVAY---GQISDLAKSFD---------------------------- 331

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LF +M  + +RP+EFT   +L  C   G + LGE +     K   ++D++V   LIDMY 
Sbjct: 332 LFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYS 391

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
           K G ++KA+R+   +  KD  +WT+MI G   +    ++L+ F  M    I PD +    
Sbjct: 392 KYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLAS 451

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
            +SAC     + +G++  + + +  G   + + +  +V+L  R G   EA  + + +  K
Sbjct: 452 AISACAGIKAMRQGQQIHSRVYVS-GYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHK 510

Query: 515 PNSIVWGALL 524
            + I W  ++
Sbjct: 511 -DKITWNGMV 519


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/709 (35%), Positives = 400/709 (56%), Gaps = 23/709 (3%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTV---QNKLVTFCCSEKGDMKYACKVF 72
           +T L+  +  C +M    +  S+      + NPT+    + LV +  S   D  +A ++F
Sbjct: 197 QTALVDMLVRCGAMDFASKQFSR------IKNPTIICRNSMLVGYAKSHGVD--HALEIF 248

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           + +P   V  WN +I   S+    +  + + +DM    VRPD+ T+   L    R  ++E
Sbjct: 249 KSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLE 308

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           +GK+LH  V++       +V +A++  Y  CG    A+ +F      + V+W  +  G+ 
Sbjct: 309 WGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFL 368

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +   F E+ +LF +M  + +      +  ++S C    D+ +G + H    +      ++
Sbjct: 369 QYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVV 428

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + N+L  MYA CG +  A  IF  +  +D++SWT ++T Y   G +  AR++FD M  R+
Sbjct: 429 VSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRN 488

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVK 371
            + W AM+  Y++     + L ++ +M T  ++ PD  T V++   CA++GA +LG+ + 
Sbjct: 489 VITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQII 548

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            +  K  +  D  V NA+I MY KCG + +A++ F  + RKD  +W AMI G + +G G 
Sbjct: 549 GHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGK 608

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           +++++F  +L     PD ++YV VLS C+H+G+V+EG+ YF  M   H I P   H+ CM
Sbjct: 609 QAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCM 668

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAGHL EA  +I  MPMKP + VWGALL AC+ H + ++AE+AAK + +LD    
Sbjct: 669 VDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGS 728

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             Y+LL  +YA   + D+  ++R+++ D+GIKK+PG S +E+N  VH F A D SHPQ  
Sbjct: 729 GGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVI 788

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            I  KLDE+   +  +GY+             +  R+   HSEKLA+AFG++S    + I
Sbjct: 789 AIREKLDELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLPAWMPI 837

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            I+KNLR+C DCH + KL+S V DRE ++RD  RFHHFK GSCSC DYW
Sbjct: 838 HIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 198/430 (46%), Gaps = 35/430 (8%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI----------------- 172
           A+   + LH  ++  G  S VF+QN L+  Y  CG +  AR +                 
Sbjct: 40  ALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMM 99

Query: 173 ---------------FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTS 216
                          F      DV +WN + SGY +  QF     +F  M + G  LP +
Sbjct: 100 NGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNA 159

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T   V+ +C  L   +V  +    + +     +  ++ AL DM   CG M FA + F  
Sbjct: 160 FTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSR 219

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           IKN  +I   +++ GY     VD A + F  MPERD V W  +I    +  R REAL + 
Sbjct: 220 IKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMV 279

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            +M    +RPD  T  S LTACA L +LE G+ +   + +N    D +V +A++++Y KC
Sbjct: 280 VDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKC 339

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G  ++A+RVF  +  ++  +WT +I G    G   +S+++F+QM    +  D+     ++
Sbjct: 340 GCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLI 399

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           S C +T  +  G +  + + ++ G          ++ +  + G+L  A E+I N   + +
Sbjct: 400 SGCCNTMDICLGSQLHS-LCLKSGHTRAVVVSNSLISMYAKCGNLQNA-ELIFNFMAERD 457

Query: 517 SIVWGALLGA 526
            + W  ++ A
Sbjct: 458 IVSWTGMITA 467



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 207/460 (45%), Gaps = 71/460 (15%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFL 121
           G +  A ++F ++P   V  WNT++ GY +     N + I++ M ++ D  P+ +TF  +
Sbjct: 106 GSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCV 165

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD------- 174
           +K        E   +L   + KF       VQ AL+     CG +D A   F        
Sbjct: 166 MKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTI 225

Query: 175 -------VSY-----------------KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
                  V Y                 + DVV+WN + S   +  +  E   +  +M  K
Sbjct: 226 ICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGK 285

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL--ILENALTDMYAACGEMG 268
           GV P S T    L+ACA+L  L+ GK+ H  V+  + +P++   + +A+ ++YA CG   
Sbjct: 286 GVRPDSTTYTSSLTACARLSSLEWGKQLH--VQVIRNLPHIDPYVASAMVELYAKCGCFK 343

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A  +F ++++++ +SWT ++ G++  G                                
Sbjct: 344 EAKRVFSSLRDRNSVSWTVLIGGFLQYGC------------------------------- 372

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           F E++ LF +M+   +  D+F + ++++ C N   + LG  + +   K+     + V N+
Sbjct: 373 FSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNS 432

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LI MY KCG+++ A+ +F  M  +D  +WT MI   +  G+  K+ + F  M   ++I  
Sbjct: 433 LISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVI-- 490

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
             T+  +L A    G  ++G + ++DM  +  + P+   Y
Sbjct: 491 --TWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTY 528



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 146/340 (42%), Gaps = 39/340 (11%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN-IKNK 280
            L +C     L   +  H  +    +   + L+N L   Y +CG +  A  +  + I   
Sbjct: 31  ALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEP 90

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 339
           +VI+   ++ GY   G +  A + F +MP RD   W  ++ GY +  +F  AL +F  M 
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG-- 397
           QT +  P+ FT   ++ +C  LG  E+   +   + K   ++D  V  AL+DM  +CG  
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAM 210

Query: 398 -----------------------------DVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
                                         V+ A  +F+ M  +D  +W  +I  L+ +G
Sbjct: 211 DFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSG 270

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM--TIQHGIEPNEA 486
              ++LDM   M    + PD  TY   L+AC     ++ G++    +   + H I+P  A
Sbjct: 271 RVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPH-IDPYVA 329

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
               MV+L  + G   EA  V  ++  + NS+ W  L+G 
Sbjct: 330 --SAMVELYAKCGCFKEAKRVFSSLRDR-NSVSWTVLIGG 366


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/591 (41%), Positives = 358/591 (60%), Gaps = 7/591 (1%)

Query: 134 GKELHCHVLKFGFDSSV--FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             ELH  VL+ G   +    V   L   Y   G +D++  +   +     + + +    +
Sbjct: 305 AAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAIFYTSAIHAH 364

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
                      L  +M  +G+LPT+ T+   L AC   + L  G+  H Y  +  +  + 
Sbjct: 365 SSRGHRLPALALLSDMLAQGLLPTAHTLSASLPAC---RGLSPGRALHGYAFKLALAGDS 421

Query: 252 ILENALTDMYAACGEMGFALEIFGN-IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
            +  AL  MYA  G+   A  +F + + +  V+S TA++T Y + G +D AR  FD +P 
Sbjct: 422 YVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPT 481

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           +D+V W AMIDGY +  R  EAL LFR M  S + PDE T+V +L+A A LG +E G+W+
Sbjct: 482 KDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWL 541

Query: 371 KTYI-DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
            +Y+ +  +V+  + VG ALIDMYCKCG +  A  VF  +  KD   W AMI G A++G 
Sbjct: 542 HSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGD 601

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
             K+L+MF Q     + P ++T++G+L+AC+H+GMV+EGRE+F  M  ++GI+P   HYG
Sbjct: 602 SRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYG 661

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           CMVDLLGRAG + EA  ++++M + P++++W +LL ACR+H++  + +  A  ++     
Sbjct: 662 CMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLA 721

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           N  +Y+LL NIYAA   W     +R M+   GI+K PGCS IE++  V+EFVAGD SHP+
Sbjct: 722 NSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPR 781

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
           T EIY+ LD+M   +K  G++P    V  D+ E  KE+A+  HSEKLA+AFGLIS+ PG 
Sbjct: 782 TDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGA 841

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           TI+IVKNLR C DCH + KL+S +  R+++ RD+ RFHHF  GSCSC DYW
Sbjct: 842 TIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 7/311 (2%)

Query: 44  LLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLI 102
           +L +P V +      C ++ G +  A  +F  +P      WN MI GY++       + +
Sbjct: 447 MLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRL 506

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF-GFDSSVFVQNALISTYC 161
           +  ML S V PD  T   +L    +   VE GK LH +V        SV V  ALI  YC
Sbjct: 507 FRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYC 566

Query: 162 LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221
            CG +  A  +F      D+V WNAM +GY       +  ++F +   +G+ PT +T + 
Sbjct: 567 KCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIG 626

Query: 222 VLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-N 279
           +L+AC+    ++ G+   + + +E  I P +     + D+    G +  A  +  ++K  
Sbjct: 627 LLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKIT 686

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV---LWTAMIDGYLRVNRFREALTLF 336
            D + W +++        + + +Q  D +  +      ++  + + Y  V  + E   + 
Sbjct: 687 PDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVR 746

Query: 337 REMQTSNIRPD 347
             M+ S I+ +
Sbjct: 747 SMMKASGIQKE 757


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 245/640 (38%), Positives = 371/640 (57%), Gaps = 36/640 (5%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN  ++  +R    +  + +Y  ML S   P+ +TFPF  K          G +LH HV+
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY--KDDVVTWNAMFSGYKRVKQFDET 200
           K G +   FVQ +LIS YC C  +  AR +FD ++  ++  V +NA+ +GY    +F + 
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             LF +M ++GV   +VT++ ++  CA    L  G   H       +  +L + N L  M
Sbjct: 144 VLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTM 203

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           Y  CG                                VD AR+ FD MPE+  + W AMI
Sbjct: 204 YVRCG-------------------------------SVDFARKLFDGMPEKGLITWNAMI 232

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            GY +       L L+R+M+ + I PD  T+V +L++CA+LGA   G  V+  I+ +   
Sbjct: 233 SGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFG 292

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            + F+ NALI+MY +CG++ KA+ +F  M  K+  +WTA+I G  ++G G+ ++ +F +M
Sbjct: 293 FNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEM 352

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           + +  +PD   +V VLSAC+H G+ ++G  YF  M   +G++P   HY C+VDLLGRAG 
Sbjct: 353 ISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGR 412

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L EA ++I +M ++P+  VWGALLGAC++HR+ E+AE+A ++++E +P N   YVLL NI
Sbjct: 413 LEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNI 472

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           ++     +    +R M+ +R +KK PGCS +E  G +H F+AGD++HPQ +EIY  LD +
Sbjct: 473 FSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGL 532

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
              +K  G   D  +   +   E+    +  HSEKLA+AFGLI++ PG  I ++KNLR+C
Sbjct: 533 EDIIKRRGGSNDNDQ---ESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVC 589

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            DCH   KLVS + DR+++VRD TRFHHFK+G CSCKDYW
Sbjct: 590 GDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 188/393 (47%), Gaps = 36/393 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF--RKIPRPSVCLWNTMIKGY 90
            Q+H   IK G    P VQ  L++  C +   +  A KVF      R     +N +I GY
Sbjct: 76  SQLHGHVIKTGCEPEPFVQTSLISMYC-KCSTIASARKVFDENHHSRNLAVCYNALIAGY 134

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           S      + VL++  M K  V  +  T   L+      I + FG  LH   ++FG D  +
Sbjct: 135 SLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDL 194

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            V N L++ Y  CG VD AR +FD   +  ++TWNAM SGY +         L+ +ME  
Sbjct: 195 SVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFT 254

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G++P  VT+V VLS+CA L     G+   + ++      N  L+NAL +MYA CG +  A
Sbjct: 255 GIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKA 314

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
             IF  +  K+VISWTAI+ GY   GQ ++A Q FD                        
Sbjct: 315 RAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFD------------------------ 350

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNAL 389
                  EM +S+  PD    VS+L+AC++ G  E G +  T ++++  ++      + +
Sbjct: 351 -------EMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCV 403

Query: 390 IDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
           +D+  + G +E+A+++   M +  D   W A++
Sbjct: 404 VDLLGRAGRLEEARKLIGSMSVEPDGAVWGALL 436



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 176/411 (42%), Gaps = 33/411 (8%)

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           ++   +WNA      R + F E   L+ +M   G  P + T      +CA L     G +
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H +V +    P   ++ +L  MY  C  +  A ++F                   N   
Sbjct: 78  LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDE-----------------NHHS 120

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
            ++A            V + A+I GY   +RF +A+ LFR+M+   +  +  T++ ++  
Sbjct: 121 RNLA------------VCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPV 168

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
           CA    L  G  +     +  +  D+ VGN L+ MY +CG V+ A+++F  M  K   TW
Sbjct: 169 CAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITW 228

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
            AMI G A NG     LD++ +M    I+PD VT VGVLS+C H G    GRE    + +
Sbjct: 229 NAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIEL 288

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
             G   N      ++++  R G+L +A  +   M  K N I W A++    +H   E+A 
Sbjct: 289 S-GFGFNPFLKNALINMYARCGNLVKARAIFDGMTEK-NVISWTAIIAGYGMHGQGELAV 346

Query: 538 MAAKQILELD--PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTP 586
               +++  D  PD  A   +L     A            M  D G++  P
Sbjct: 347 QLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGP 397



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 143/307 (46%), Gaps = 15/307 (4%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
            +H+ +++ GL  + +V N L+T      G + +A K+F  +P   +  WN MI GY++ 
Sbjct: 180 SLHACSVRFGLDGDLSVGNCLLTMYV-RCGSVDFARKLFDGMPEKGLITWNAMISGYAQN 238

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
               + + +Y  M  + + PD  T   +L       A   G+E+   +   GF  + F++
Sbjct: 239 GLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLK 298

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           NALI+ Y  CG +  AR IFD   + +V++W A+ +GY    Q +   +LF EM     L
Sbjct: 299 NALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDEL 358

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFALE 272
           P     V VLSAC+     + G      + ++  + P     + + D+    G +  A +
Sbjct: 359 PDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARK 418

Query: 273 IFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTAM------ 319
           + G++    D   W A++        V++A   F+++ E +      YVL + +      
Sbjct: 419 LIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGN 478

Query: 320 IDGYLRV 326
           ++G LRV
Sbjct: 479 MEGILRV 485


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/662 (38%), Positives = 379/662 (57%), Gaps = 4/662 (0%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD   A ++F  IP+P     +T+I   +        + IY  + +  ++PD   F    
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K           KE+H    + G  S VFV NALI  Y  C  V+ AR +FD     DVV
Sbjct: 86  KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 145

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +W ++ S Y +     +   +F EM   GV P  +T+  +L ACA+LKDL  GK  H + 
Sbjct: 146 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFA 205

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
               +V NL + +AL  +YA C  +  A  +F  + ++DV+SW  ++T Y    + +   
Sbjct: 206 VRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGF 265

Query: 303 QYFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
             F +M       D   W A+I G +   R  EA+ +FR+MQ    +P+E TI SIL AC
Sbjct: 266 SLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPAC 325

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           +    L +G+ +  Y+ ++    D+    AL+ MY KCGD+  ++ VF  M RKD   W 
Sbjct: 326 SFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWN 385

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
            MI+  A++G+G ++L +F +ML + + P+ VT+ GVLS C+H+ +V+EG + F  M   
Sbjct: 386 TMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRD 445

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           H +EP+  HY C+VD+  RAG LNEA + I+ MPM+P +  WGALL ACRV+++ E+A++
Sbjct: 446 HLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKI 505

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           +AK++ E++P+N   YV L NI      W    ++R ++ +RGI KTPGCS +++   VH
Sbjct: 506 SAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVH 565

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
            FV GDKS+ ++ +IY  LDE+   +K  GY PD   V  D+ +E+K  ++  HSEKLA+
Sbjct: 566 TFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAV 625

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           AFG+++     TIR+ KNLR+C DCH   K +S V    ++VRD  RFHHFK+G+CSCKD
Sbjct: 626 AFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKD 685

Query: 719 YW 720
            W
Sbjct: 686 LW 687



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 4/235 (1%)

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
           +N G  + ARQ FD +P+ D    + +I          EA+ ++  +Q   I+PD    +
Sbjct: 23  LNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFL 82

Query: 353 SILTACANLG-ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           +   ACA  G AL + E V     +  V +D+FVGNALI  Y KC  VE A+RVF +++ 
Sbjct: 83  AAAKACAVSGDALRVKE-VHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVV 141

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           +D  +WT++       G   K +D+F +M  + + P+ +T   +L AC     +  G+E 
Sbjct: 142 RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEI 201

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
                ++HG+  N      +V L  +   + EA  V   MP + + + W  +L A
Sbjct: 202 HG-FAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLTA 254



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 44/92 (47%)

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           +G  LI +    GD  +A+++F  + + D  T + +I  L  +G  ++++ ++S +    
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           I PD   ++    AC  +G     +E   D T
Sbjct: 74  IKPDMPVFLAAAKACAVSGDALRVKEVHDDAT 105


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/695 (36%), Positives = 397/695 (57%), Gaps = 43/695 (6%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           Q+H+  ++LGLL      +  +       G ++ A + F ++    V  WN M+ G  R 
Sbjct: 89  QLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRN 148

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYT----FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
                 V ++  M+   V  D  T     P  +    R +A+     +H + +K G D  
Sbjct: 149 ARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALA----MHLYAVKHGLDDE 204

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           +FV NA+I  Y   G ++  R +FD     D+VTWN++ SG+++  Q     ++F  M  
Sbjct: 205 LFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRD 264

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECKIVPNLILENALTDMYAACGEMG 268
            GV P  +T++ + SA A+  D+  G+  H Y V+    V ++I  NA+ DM        
Sbjct: 265 SGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDM-------- 316

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
                                  Y    +++ A++ FD MP RD V W  +I GY++   
Sbjct: 317 -----------------------YAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGL 353

Query: 329 FREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
             EA+ ++  MQ    ++P + T VS+L A ++LGAL+ G  +     K  +  D++VG 
Sbjct: 354 ASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGT 413

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
            +ID+Y KCG +++A  +F +  R+    W A+I G+ ++GHG K+L +FSQM +  I P
Sbjct: 414 CVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISP 473

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D VT+V +L+AC+H G+VD+GR +F  M   +GI+P   HY CMVD+ GRAG L++A + 
Sbjct: 474 DHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDF 533

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           I+NMP+KP+S +WGALLGACR+H + EM ++A++ + ELDP N   YVL+ N+YA   +W
Sbjct: 534 IRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKW 593

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS--HPQTKEIYLKLDEMTSDLK 625
           D   E+R ++  + ++KTPG S IE+   V+ F +G++   HPQ +EI  +L ++ + ++
Sbjct: 594 DGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIR 653

Query: 626 FVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHR 685
            +GY+PD S V  DV E++KE+ +  HSE+LA+AFG+I++ P   + I KNLR+C DCH 
Sbjct: 654 SLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHN 713

Query: 686 MAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             K +S + +RE+IVRD  RFHHFK G CSC D+W
Sbjct: 714 ATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 151/332 (45%), Gaps = 8/332 (2%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           +S +SP   LT  + L S I  C  +   + +H   ++ G      +    +    ++  
Sbjct: 264 DSGVSP-DVLTLLS-LASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLS 321

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLL 122
            ++ A ++F  +P      WNT+I GY +       + +Y  M K + ++P   TF  +L
Sbjct: 322 KIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVL 381

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
             ++   A++ G  +H   +K G +  V+V   +I  Y  CG++D A  +F+ + +    
Sbjct: 382 PAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTG 441

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
            WNA+ SG        +   LF +M+++G+ P  VT V +L+AC+    +D G+     +
Sbjct: 442 PWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMM 501

Query: 243 KECKIVPNLILENA-LTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDM 300
           +    +  +    A + DM+   G++  A +   N+  K D   W A++      G V+M
Sbjct: 502 QTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEM 561

Query: 301 ---ARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
              A Q   ++  ++   +  M + Y +V ++
Sbjct: 562 GKVASQNLFELDPKNVGYYVLMSNMYAKVGKW 593


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/609 (39%), Positives = 349/609 (57%), Gaps = 32/609 (5%)

Query: 113 PDNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
           P + T P  LK  +R    +  G++LH   LK    ++  V  +L+S Y  CG +  A+ 
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +FD       V W A+ + Y       E   +       G+ P S T V VL+ACA++ D
Sbjct: 128 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 187

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           L  G+   R  ++  +  ++ +  A  D+Y  CGEM                        
Sbjct: 188 LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMA----------------------- 224

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
                    AR+ FD+M  +D V W AM+ GY      REAL LF  MQ   ++PD + +
Sbjct: 225 --------KAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAV 276

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
              L+AC  LGAL+LG      +D ++  ++  +G ALIDMY KCG   +A  VF++M +
Sbjct: 277 AGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRK 336

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           KD   W AMI+GL + GH   +  +  QM ++ +  ++ T++G+L +CTHTG++ +GR Y
Sbjct: 337 KDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRY 396

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531
           F +MT  + I P   HYGCMVDLL RAG L EA +++ +MPM  N+++ GALLG C++HR
Sbjct: 397 FHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHR 456

Query: 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMI 591
           + E+AE   KQ++ L+P N   YV+L NIY+   RW++  +LR  +  +G++K P CS +
Sbjct: 457 NTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWV 516

Query: 592 EMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQ 651
           E  G VHEF  GDKSHP + +IY KLDE+  ++K +GY P    V  DV +E+KE  +  
Sbjct: 517 EFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVH 576

Query: 652 HSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH 711
           HSEKLA+AF L+ +GPG TIR+ KNLR+C DCH   KLVS +  RE+IVRD  RFH F+ 
Sbjct: 577 HSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRD 636

Query: 712 GSCSCKDYW 720
           GSCSC DYW
Sbjct: 637 GSCSCNDYW 645



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 184/420 (43%), Gaps = 37/420 (8%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           PS LT    L S       +   +Q+H++++KL   TNP V   L++   ++ G +  A 
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLY-AKCGLLHRAQ 126

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF ++P PS   W  +I  Y      +  V +  +   + +RPD++T   +L    R  
Sbjct: 127 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 186

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            +  G+ +     + G   SVFV  A +  Y  CGE+  AR +FD     D V W AM  
Sbjct: 187 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 246

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY       E   LF  M+ +G+ P    +   LSAC +L  LD+G++A R V   + + 
Sbjct: 247 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 306

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           N +L  AL DMYA CG    A  +F  ++ KD+I W A++ G    G   +         
Sbjct: 307 NPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI--------- 357

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-E 368
                                 A  L  +M+ S ++ ++ T + +L +C + G ++ G  
Sbjct: 358 ----------------------AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 395

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           +         +   I     ++D+  + G +++A ++  +M         A+I+G  + G
Sbjct: 396 YFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDM----PMPANAVILGALLGG 451


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/588 (40%), Positives = 361/588 (61%), Gaps = 4/588 (0%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
             ELH  V++ G DS   V   L   Y   G +D +  +   +     + + +    +  
Sbjct: 40  ASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSS 99

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                    L  +M  +G+LPT+ T+   L AC   + L +G+  H Y  +  +  +  +
Sbjct: 100 RGLHLPGLALLSDMLSEGLLPTAHTLSASLPAC---RGLSLGRALHAYAFKLALSGDSYV 156

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             AL  MYA  G+   A  +F  + +  V+S TA++T Y N G +D AR+ FD +P +D+
Sbjct: 157 ATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDF 216

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           + W AMIDGY +  +  EAL LFR M  S+  PDE T+V +L+A A LG +E G+W+ +Y
Sbjct: 217 ICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSY 276

Query: 374 IDKNK-VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           +  ++ V+ ++ V  AL+DMYCKCG +E A  VF  +  KD   W AMI G A++G   K
Sbjct: 277 VKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRK 336

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L+MF Q+    + P ++T++G+L+AC+H+G+V+EGR +F  M  ++GI+P   HYGCMV
Sbjct: 337 ALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMV 396

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGRAG + EA  +++++ + P++++W +LL ACR+H++  + +  A  ++     N  
Sbjct: 397 DLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSG 456

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
           +Y+LL NIYAA  +W+    +R M+   GI+K PGCS IE++  V+EFVAGD SHP T E
Sbjct: 457 MYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDE 516

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY  LD+M + +K  G++P    V  D+ E  KE+A+  HSEKLA+AFGLISS PG TI+
Sbjct: 517 IYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRPGSTIK 576

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IVKNLR C DCH + KL+S +  R+++ RD+ RFHHF  GSC+C DYW
Sbjct: 577 IVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/715 (36%), Positives = 395/715 (55%), Gaps = 60/715 (8%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            KQ+H+ T++ G L   T  N LVT   +  G +  A  +F       +  WNT+I   S+
Sbjct: 454  KQVHAYTLRNGDLRTYT-NNALVTMY-ARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQ 511

Query: 93   IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG-FDSSVF 151
             D  +  ++    M+   VRPD  T   +L   ++   +  G+E+HC+ L+ G    + F
Sbjct: 512  NDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSF 571

Query: 152  VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM-ERK 210
            V  AL+  YC C +    R +FD   +  V  WNA+ +GY R +  D+  +LF EM    
Sbjct: 572  VGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISES 631

Query: 211  GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
               P + T   VL AC + K     +  H Y+ +     +  ++NAL DMY+        
Sbjct: 632  EFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYS-------- 683

Query: 271  LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
                                     G+V++++  F +M +RD V W  MI G +   R+ 
Sbjct: 684  -----------------------RMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYD 720

Query: 331  EALTLFREMQTSN------------------IRPDEFTIVSILTACANLGALELGEWVKT 372
            +AL L  EMQ                      +P+  T++++L  CA L AL  G+ +  
Sbjct: 721  DALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHA 780

Query: 373  YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            Y  K K+  D+ VG+AL+DMY KCG +  A RVF +M  ++  TW  +I+   ++G G++
Sbjct: 781  YAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEE 840

Query: 433  SLDMFSQML------RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
            +L++F  M       R  I P+EVTY+ + +AC+H+GMVDEG   F  M   HG+EP   
Sbjct: 841  ALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGD 900

Query: 487  HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLGACRVHRDAEMAEMAAKQILE 545
            HY C+VDLLGR+G + EA E+I  MP   N +  W +LLGACR+H+  E  E+AAK +  
Sbjct: 901  HYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFV 960

Query: 546  LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
            L+P+  + YVL+ NIY++   WD    +R+ + + G++K PGCS IE    VH+F++GD 
Sbjct: 961  LEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDA 1020

Query: 606  SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
            SHPQ+KE++  L+ ++  ++  GY+PDIS V  +V +E+KE  +  HSE+LA+AFGL+++
Sbjct: 1021 SHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNT 1080

Query: 666  GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             PG TIR+ KNLR+C DCH   K++S + DRE+I+RD  RFHHF +G+CSC DYW
Sbjct: 1081 PPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 159/576 (27%), Positives = 249/576 (43%), Gaps = 71/576 (12%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLL--TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           ++   ++H L   KQIH+   K G    ++  V N LV     + GD+  A +VF  IP 
Sbjct: 337 LKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMY-GKCGDLTAARQVFDDIPD 395

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-DIAVEFGKE 136
                WN+MI    R +  +  + ++  ML  +V P ++T   +    +     V  GK+
Sbjct: 396 RDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQ 455

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H + L+ G D   +  NAL++ Y   G V+ A+ +F V    D+V+WN + S   +  +
Sbjct: 456 VHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDR 514

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECKIVPNLILEN 255
           F+E       M   GV P  VT+  VL AC++L+ L +G+  H Y ++   ++ N  +  
Sbjct: 515 FEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGT 574

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           AL DMY  C                                Q    R  FD +  R   +
Sbjct: 575 ALVDMYCNCK-------------------------------QPKKGRLVFDGVVRRTVAV 603

Query: 316 WTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
           W A++ GY R     +AL LF EM   S   P+  T  S+L AC         E +  YI
Sbjct: 604 WNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYI 663

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K     D +V NAL+DMY + G VE ++ +F  M ++D  +W  MI G  + G  D +L
Sbjct: 664 VKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDAL 723

Query: 435 DMFSQMLR------------------ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           ++  +M R                      P+ VT + VL  C     + +G+E  A   
Sbjct: 724 NLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHA-YA 782

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
           ++  +  + A    +VD+  + G LN A  V   MP++ N I W  L+ A  +H   E A
Sbjct: 783 VKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMAYGMHGKGEEA 841

Query: 537 -------EMAAKQILELDPDNEAVYVLLCNIYAACN 565
                          E+   NE  Y+    I+AAC+
Sbjct: 842 LELFRIMTAGGGSNREVIRPNEVTYIA---IFAACS 874



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 218/460 (47%), Gaps = 39/460 (8%)

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           + R S   W  +++  +   S ++ +  Y  ML +   PDN+ FP +LK       +  G
Sbjct: 290 VERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLG 349

Query: 135 KELHCHVLKFGF--DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H HV KFG    SSV V N+L++ Y  CG++  AR +FD     D V+WN+M +   
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK-DLDVGKRAHRYVKECKIVPNL 251
           R ++++ +  LF  M  + V PTS T+V V  AC+ ++  + +GK+ H Y      +   
Sbjct: 410 RFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDL-RT 468

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
              NAL  MYA  G +  A  +FG    KD++SW  +++                 + + 
Sbjct: 469 YTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVIS----------------SLSQN 512

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D               RF EAL     M    +RPD  T+ S+L AC+ L  L +G  + 
Sbjct: 513 D---------------RFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIH 557

Query: 372 TYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
            Y  +N  +  + FVG AL+DMYC C   +K + VF  ++R+    W A++ G A N   
Sbjct: 558 CYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFD 617

Query: 431 DKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
           D++L +F +M+  S   P+  T+  VL AC    +  + +E      ++ G   ++    
Sbjct: 618 DQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSD-KEGIHGYIVKRGFGKDKYVQN 676

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529
            ++D+  R G +  +  +   M  K + + W  ++  C V
Sbjct: 677 ALMDMYSRMGRVEISKTIFGRM-NKRDIVSWNTMITGCIV 715



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 137/526 (26%), Positives = 227/526 (43%), Gaps = 103/526 (19%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLG-LLTNPTVQNKLVTFCCSEKGDMKYACKVFRK 74
           L S +  C  + +L+   +IH   ++ G L+ N  V   LV   C+ K   K    VF  
Sbjct: 537 LASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCK-QPKKGRLVFDG 595

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEF 133
           + R +V +WN ++ GY+R +     + ++++M+ +S+  P+  TF  +L    R      
Sbjct: 596 VVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSD 655

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
            + +H +++K GF    +VQNAL+  Y   G V++++ IF    K D+V+WN M +G   
Sbjct: 656 KEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIV 715

Query: 194 VKQFDETRKLFGEMERK----------------GVL--PTSVTIVLVLSACAKLKDLDVG 235
             ++D+   L  EM+R+                GV   P SVT++ VL  CA L  L  G
Sbjct: 716 CGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKG 775

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           K  H Y  + K+  ++ + +AL DMYA CG +  A  +F  +  ++VI+W  ++  Y   
Sbjct: 776 KEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMH 835

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN------IRPDEF 349
           G+ +                               EAL LFR M          IRP+E 
Sbjct: 836 GKGE-------------------------------EALELFRIMTAGGGSNREVIRPNEV 864

Query: 350 TIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
           T ++I  AC++ G ++ G     T    + V+        L+D+  + G V++A  +   
Sbjct: 865 TYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINT 924

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M                +N      +D +S +L A  I   V                  
Sbjct: 925 MPSN-------------LN-----KVDAWSSLLGACRIHQSVE----------------- 949

Query: 469 REYFADMTIQH--GIEPNEA-HYGCMVDLLGRAGHLNEALEVIKNM 511
              F ++  +H   +EPN A HY  M ++   AG  ++AL V K M
Sbjct: 950 ---FGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKM 992


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/613 (41%), Positives = 371/613 (60%), Gaps = 36/613 (5%)

Query: 101 LIYLDMLKSDVRPDNYTFPFLLK--GFTRDIAVEFGKELHCHVLKFGFDSSV-FVQNALI 157
           +++  M ++ VRPD +TF FL K    +R  A+     LH   L+    S+  FV N+LI
Sbjct: 30  VLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRAL-LCTMLHAACLRTMLPSAAPFVANSLI 88

Query: 158 STYCLCGEVDMARGIFD-VSYKD------------------------------DVVTWNA 186
             Y   G     R  FD +  KD                              DV++W +
Sbjct: 89  HMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTS 148

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + + Y R  +  E    F  M  +G+ P  VT++ VLSAC++LKDL++G   H  VKE  
Sbjct: 149 LIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKG 208

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYF 305
           +  +  L  AL DMYA CG+ G A E+F  + + +   SW AI+ GY   G VD+AR  F
Sbjct: 209 MSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLF 268

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
           DQM  RD + + +MI GY+   + REAL LF  M+  ++R D FT+VS+L+ACA+LGAL 
Sbjct: 269 DQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALP 328

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            G  +   I+   V+ DI++G AL+DMY KCG V +A  VF+ M ++D   WTAMI GLA
Sbjct: 329 QGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLA 388

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            NG G   L+ F QM      P+ V+Y+ VL+AC+H+ +++EGR YF +M I + I P  
Sbjct: 389 FNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQI 448

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HYGCM+DLLGR+G L+EA++++K MPM+PNS++W ++L ACRVH+  ++A+ AA+ +L+
Sbjct: 449 EHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLK 508

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           ++PD +AVYV L NI     +W++  ++R ++ +R +KKT G S + + G VH+FV  DK
Sbjct: 509 IEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDK 568

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           SHP+  EI   L+E++  LK  GY P  S+V +DV EE+KE+ +  HSEKLA+AFGL+S 
Sbjct: 569 SHPRILEIIAMLEEISHRLKSAGYSPITSQVTVDVDEEEKEQTLLAHSEKLAIAFGLVSL 628

Query: 666 GPGVTIRIVKNLR 678
            P + + I+KNLR
Sbjct: 629 APNLPVHIIKNLR 641



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 141/587 (24%), Positives = 278/587 (47%), Gaps = 41/587 (6%)

Query: 15   QETP-LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
            +ETP   S I    S ++  Q+H + + LGL  NP V + LV      +     A  +FR
Sbjct: 732  RETPHTFSTILGVCSTYEALQLHGRVLALGLCCNPFVGSALVNHYMHVESP-HAALSLFR 790

Query: 74   KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG-FTRDIAVE 132
            ++P  +  + N +++G   +   +  +  +LDM +  +  +  ++ + +KG +     +E
Sbjct: 791  ELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLE 850

Query: 133  FGKELHCHVLKFGF-DSSVFVQNALISTYCLCGE-VDMARGIFDVSYKDDVVTWNAMFSG 190
             G++LH  VLK G+  S++F+ N+L+  Y   G+ VD  + + D+   +DV++WN++ S 
Sbjct: 851  QGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDI-LSEDVISWNSILSM 909

Query: 191  YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI-VP 249
            Y       E      +M   G +P+  + V +L+   K  D  +G + H  V +      
Sbjct: 910  YADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCS 969

Query: 250  NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
            ++ ++  L DMY  C     +L I                               F+++P
Sbjct: 970  SVHVQTTLIDMYGKCCCFDHSLAI-------------------------------FNEIP 998

Query: 310  ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-- 367
                    ++I   L  N F  AL +   M    + PD+ T  + + A +   +  L   
Sbjct: 999  SIALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSC 1058

Query: 368  EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
            + + + + K   + D+ V ++LI  Y   G +  +  +F  +L  +   +TA+I   A  
Sbjct: 1059 QMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARY 1118

Query: 428  GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
            G G +++++F QM+ + + PD VT++  ++ C   GM +EGR     M     ++P+E H
Sbjct: 1119 GDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERH 1178

Query: 488  YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
            + CMV+LL R G + EA+E+++  P++  +  W +LL +C+ H +  + + AA  ++++ 
Sbjct: 1179 FACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVG 1238

Query: 548  PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
              + A  + + N +      +    +++M   + +KK+ G S+IE++
Sbjct: 1239 RKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKKS-GHSLIEVS 1284



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 186/438 (42%), Gaps = 74/438 (16%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           ++ G +  A  +  + P   V  W ++I  YSR D  K  V  + +ML   + PD+ T  
Sbjct: 123 AKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVI 182

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE-------------- 165
            +L   ++   +E G  LH  V + G   S  +  ALI  Y  CG+              
Sbjct: 183 GVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRG 242

Query: 166 ------------------VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
                             VD+AR +FD     D++T+N+M +GY    Q  E   LF  M
Sbjct: 243 RRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNM 302

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
            R  +   + T+V +LSACA L  L  G+  H  ++   +  ++ +  AL DMY  CG +
Sbjct: 303 RRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRV 362

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  +F  +  +DV +WTA++ G    G      +YF QM            DG+    
Sbjct: 363 NEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQM----------RCDGF---- 408

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG- 386
                            +P+  + +++LTAC++   L  G   + Y D+ ++  +I    
Sbjct: 409 -----------------QPNPVSYIAVLTACSHSCLLNEG---RLYFDEMRILYNIHPQI 448

Query: 387 ---NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
                +ID+  + G +++A  + + M ++ +   W +++    ++   D +      +L+
Sbjct: 449 EHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLK 508

Query: 443 ASIIPDE-VTYVGVLSAC 459
             I PDE   YV + + C
Sbjct: 509 --IEPDEDAVYVQLYNIC 524



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 125/276 (45%), Gaps = 13/276 (4%)

Query: 48  PTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML 107
           P   N ++   C + G +  A  +F ++    +  +N+MI GY      +  +L++++M 
Sbjct: 245 PQSWNAIIDGYC-KHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMR 303

Query: 108 KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVD 167
           + D+R DN+T   LL       A+  G+ LH  +     ++ +++  AL+  Y  CG V+
Sbjct: 304 RHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVN 363

Query: 168 MARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
            A  +F    K DV  W AM +G           + F +M   G  P  V+ + VL+AC+
Sbjct: 364 EATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACS 423

Query: 228 KLKDLDVGKRAHRYVKECKIV----PNLILENALTDMYAACGEMGFALEIFGNIK-NKDV 282
               L+ G+    Y  E +I+    P +     + D+    G +  A+++   +    + 
Sbjct: 424 HSCLLNEGR---LYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNS 480

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQM----PERDYV 314
           + W +I++      ++D+A+   + +    P+ D V
Sbjct: 481 VIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAV 516


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/688 (35%), Positives = 380/688 (55%), Gaps = 32/688 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +++H+  I+ G   +    N LV    S+ GD++ A  VF K+P   V  WN  I G   
Sbjct: 222 RKVHAMVIRTGYDKDVFTANALVDMY-SKLGDIRMAAVVFGKVPETDVVSWNAFISGCVL 280

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               ++ + + L M  S + P+ +T   +LK      A   G+++H  ++K   DS  ++
Sbjct: 281 HGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYI 340

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
              L+  Y   G +D A+ +FD   + D+V WNA+ SG     Q  E   LF  M ++G 
Sbjct: 341 AFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGF 400

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
                T+  VL + A L+ +   ++ H   ++   + +  + N L D Y  C  + +A  
Sbjct: 401 DVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYR 460

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F    + D+I++T+                               MI    + +   +A
Sbjct: 461 VFEKHGSYDIIAFTS-------------------------------MITALSQCDHGEDA 489

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           + LF EM    + PD F + S+L ACA+L A E G+ V  ++ K +  +D+F GNAL+  
Sbjct: 490 IKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYT 549

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG +E A   F  +  K   +W+AMI GLA +GHG ++LD+F +M+   I P+ +T 
Sbjct: 550 YAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITM 609

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
             VL AC H G+VDE + YF  M    GIE  E HY CM+DLLGRAG L++A+E++ +MP
Sbjct: 610 TSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMP 669

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            + N+ VWGALL A RVHRD E+  +AA+++  L+P+    +VLL N YA+   WD+  +
Sbjct: 670 FQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAK 729

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R+++ D  +KK P  S +E+   VH F+ GDKSHP+ ++IY KLDE+   +   GY+P+
Sbjct: 730 VRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPN 789

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
           +     DV + +KE  +  HSE+LA+AF LIS+  G  IR+ KNLR+C DCH   K +S 
Sbjct: 790 VEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISD 849

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  RE+I+RD  RFHHF+ G+CSC+DYW
Sbjct: 850 IVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 144/552 (26%), Positives = 245/552 (44%), Gaps = 75/552 (13%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYAC 69
           +L    PL++     +S+ Q   IH+  +K GL      +N L++F   C   G  +   
Sbjct: 3   SLETIGPLLTRYAATQSLLQGAHIHAHLLKSGLFA--VFRNHLLSFYSKCRLPGSAR--- 57

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF +IP P    W++++  YS     ++ +  +  M    VR + +  P +LK      
Sbjct: 58  RVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPD-- 115

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMF 188
              FG +LH   +  G    +FV NAL++ Y   G VD AR +FD    + + V+WN + 
Sbjct: 116 -AGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLM 174

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           S Y +  +     K+FGEM   GV P       V++AC   +DL+ G++ H  V      
Sbjct: 175 SAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYD 234

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            ++   NAL DMY+  G++  A  +FG +   DV+SW A ++G +  G         DQ 
Sbjct: 235 KDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGH--------DQ- 285

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                                  AL L  +M++S + P+ FT+ SIL ACA  GA  LG 
Sbjct: 286 ----------------------HALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGR 323

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            +  ++ K    +D ++   L+DMY K G ++ A++VF  + ++D   W A+I G +   
Sbjct: 324 QIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGA 383

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE---------YFADMTIQH 479
              ++L +F +M +     +  T   VL +      + + R+         + +D  + +
Sbjct: 384 QHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVN 443

Query: 480 GIEPN--------------EAH-------YGCMVDLLGRAGHLNEALEVIKNMPMK---P 515
           G+  +              E H       +  M+  L +  H  +A+++   M  K   P
Sbjct: 444 GLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDP 503

Query: 516 NSIVWGALLGAC 527
           +  V  +LL AC
Sbjct: 504 DPFVLSSLLNAC 515


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/546 (44%), Positives = 334/546 (61%), Gaps = 40/546 (7%)

Query: 184 WNAMFSGY--KRVKQFDETRK---LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           WN +   +   R +    T     +F  M   GV P   T   +L + A    L +G+  
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H  +                        + F L I       D    T++++ Y + G V
Sbjct: 87  HAQI------------------------LRFGLAI-------DPFVQTSLISMYSSSGLV 115

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ---TSNIRPDEFTIVSIL 355
           DMAR  F  MPER+ + W+ MI+GY+R  +++EAL LFREMQ    +++RP+EFT+  +L
Sbjct: 116 DMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVL 175

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
            AC  LGALE G+W   YIDK  +  D+ +G ALIDMY KCG VEKA  VF  +   KD 
Sbjct: 176 AACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDV 235

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
             W+AMI GLA++G  ++ + +FS+M+   + P+ VT++ V  AC H G+V EG++Y   
Sbjct: 236 MAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRR 295

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           MT  + I P   HYGCMVDL GRAG + EA  V+K+MPM+P+ +VWGALL   R+H D E
Sbjct: 296 MTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 355

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
             E+A K+++EL+P N   YVLL N+YA   RW++ R +R ++   GIKK PGCS+IE+ 
Sbjct: 356 TCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVG 415

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
           GV+HEF  GD SHP+T++I++ L+E+   LK  GY+ +  EV LD+ EE KE A+  HSE
Sbjct: 416 GVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSE 475

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           KLA+A+G + + PG  IRIVKNLR+C DCH   K++S V+DRE+IVRD  RFHHF  G C
Sbjct: 476 KLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLC 535

Query: 715 SCKDYW 720
           SC+DYW
Sbjct: 536 SCRDYW 541



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 183/358 (51%), Gaps = 42/358 (11%)

Query: 82  LWNTMIKGYSRIDSHKNG-----VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           LWNT+I+ + +  +   G     + I++ M    V+PD +TFPFLL+ F     +  G+ 
Sbjct: 26  LWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRS 85

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  +L+FG     FVQ +LIS Y   G VDMAR +F V  + +V++W+ M +GY R  Q
Sbjct: 86  VHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQ 145

Query: 197 FDETRKLFGEMERKG---VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
           + E   LF EM+  G   V P   T+  VL+AC +L  L+ GK AH Y+ +C +  +++L
Sbjct: 146 YKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVL 205

Query: 254 ENALTDMYAACGEMGFALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
             AL DMYA CG +  A  +F N+  NKDV++W+A+++G    G  +             
Sbjct: 206 GTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAE------------- 252

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVK 371
                             E + LF +M    +RP+  T +++  AC + G +  G ++++
Sbjct: 253 ------------------ECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLR 294

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
              +   +   I     ++D+Y + G +++A  V + M +  D   W A++ G  ++G
Sbjct: 295 RMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 352



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 159/339 (46%), Gaps = 16/339 (4%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+    +   +H  + +H+Q ++ GL  +P VQ  L++   S  G +  A  +F  +P  
Sbjct: 70  LLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMY-SSSGLVDMARNLFAVMPER 128

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLK---SDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           +V  W+ MI GY R   +K  + ++ +M     +DVRP+ +T   +L    R  A+E GK
Sbjct: 129 NVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGK 188

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRV 194
             H ++ K G    V +  ALI  Y  CG V+ A  +F ++    DV+ W+AM SG    
Sbjct: 189 WAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMH 248

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK-RAHRYVKECKIVPNLIL 253
              +E   LF +M  +GV P +VT + V  AC     +  GK    R  ++  I+P +  
Sbjct: 249 GLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQH 308

Query: 254 ENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
              + D+Y   G +  A  +  ++    DV+ W A+++G    G ++       ++ E +
Sbjct: 309 YGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELE 368

Query: 313 ------YVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                 YVL + +   Y +  R+ +   +   M+T  I+
Sbjct: 369 PTNSGAYVLLSNV---YAKRGRWEDVRHVRDLMETMGIK 404



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 135/303 (44%), Gaps = 21/303 (6%)

Query: 309 PERDYVLWTAMIDGYLRVNR-----FREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           P  +  LW  +I  +++            +++F  M+   ++PD  T   +L + A+   
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           L LG  V   I +  +  D FV  +LI MY   G V+ A+ +F  M  ++  +W+ MI G
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMING 139

Query: 424 LAINGHGDKSLDMFS--QMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
               G   ++L +F   QML  + + P+E T  GVL+AC   G ++ G+  +A   I   
Sbjct: 140 YVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGK--WAHAYIDKC 197

Query: 481 IEPNEAHYG-CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
             P +   G  ++D+  + G + +A  V  N+    + + W A++    +H  AE     
Sbjct: 198 GMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGL 257

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRE----LRQMILDRGIKKTP---GCSMIE 592
             +++       AV  L   ++ AC       E    LR+M  D  I  T    GC M++
Sbjct: 258 FSKMINQGVRPNAVTFL--AVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGC-MVD 314

Query: 593 MNG 595
           + G
Sbjct: 315 LYG 317


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 401/716 (56%), Gaps = 34/716 (4%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           S +SP S       L++       + + KQ+HS  +K G+  +  ++  L+     + GD
Sbjct: 238 SGLSPDSVTI--ASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYV-KSGD 294

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           ++ A ++F    R +V LWN M+  Y +ID       I+  ML + VRP+ +T+P +L+ 
Sbjct: 295 IEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRT 354

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
            T    +  G+++H   +K GF S ++V   LI  Y   G +D A+ I D+  + DVV+W
Sbjct: 355 CTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSW 414

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
            +M +GY + +   E  + F EM+  G+ P ++ +   +SACA +K +  G + H  V  
Sbjct: 415 TSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYV 474

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                ++ + N L  +YA CG    A   F  I++K+ I+W                   
Sbjct: 475 SGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNG----------------- 517

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                         +I G+ +   + EAL +F +M  +  + + FT VS ++A ANL  +
Sbjct: 518 --------------LISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADI 563

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           + G+ +   + K    ++  + NALI +Y KCG +E A+  F EM ++++ +W  +I   
Sbjct: 564 KQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCC 623

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           + +G G ++LD+F QM +  + P +VT+VGVL+AC+H G+V+EG  YF  M+ +HGI P 
Sbjct: 624 SQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPR 683

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HY C+VD+LGRAG L+ A   ++ MP+  +S+VW  LL AC+VH++ E+ E AAK +L
Sbjct: 684 PDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLL 743

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           EL+P + A YVLL N YA   +W +  ++R+++ DRG++K PG S IE+  VVH F  GD
Sbjct: 744 ELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGD 803

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           + HP   +IY  L  +   L  +GY  +   +F +  +E K+   + HSEKLA+AFGL+S
Sbjct: 804 RLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMS 863

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
               + +R++KNLR+C DCH   K  S V  RE+++RD  RFHHF +GSCSC DYW
Sbjct: 864 LPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 153/538 (28%), Positives = 257/538 (47%), Gaps = 41/538 (7%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           +IH++ I  GL     + N L+    ++KG ++ A +VF ++       W  ++ GY++ 
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLY-AKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQN 121

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
              +  V +Y +M +S V P  Y    +L   T+    + G+ +H  V K GF S  FV 
Sbjct: 122 GLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVG 181

Query: 154 NALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
           NALIS Y  C    +A  +F D+ Y D  VT+N + SG+ +    D    +F EM+  G+
Sbjct: 182 NALISLYLRCRSFRLADRVFCDMLYCDS-VTFNTLISGHAQCGHGDRALGIFDEMQLSGL 240

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P SVTI  +L+AC+ + DL  GK+ H Y+ +  +  + I+E +L D+Y   G++  AL+
Sbjct: 241 SPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQ 300

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           IF +    +V+ W  ++  Y   GQ+D   + FD                          
Sbjct: 301 IFDSGDRTNVVLWNLMLVAY---GQIDDLAKSFD-------------------------- 331

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
             +F  M  + +RP++FT   +L  C + G + LGE + +   KN  ++D++V   LIDM
Sbjct: 332 --IFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDM 389

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y K G ++KAQR+   +  KD  +WT+MI G   +    ++L+ F +M    I PD +  
Sbjct: 390 YSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGL 449

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
              +SAC     V +G +  A + +  G   + + +  +V L  R G   EA    + + 
Sbjct: 450 ASAISACAGIKAVHQGSQIHARVYVS-GYSADVSIWNGLVYLYARCGISKEAFSSFEAIE 508

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA--VYVLLCNIYAACNRWD 568
            K   I W  L+        + + E A K  +++D       V+  + +I A+ N  D
Sbjct: 509 HK-EGITWNGLISG---FAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLAD 562


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/558 (42%), Positives = 342/558 (61%), Gaps = 32/558 (5%)

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
             +D A  +FD   + D+V +N M  GY R         L  ++   G+LP   T   +L
Sbjct: 83  ASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLL 142

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            ACA+LK L+ GK+ H    +  +  N+ +   L +MY AC +                 
Sbjct: 143 KACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACND----------------- 185

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
                         VD AR+ FD++ E   V + A+I    R +R  EAL LFRE+Q S 
Sbjct: 186 --------------VDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESG 231

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           ++P + T++  L++CA LGAL+LG W+  Y+ KN     + V  ALIDMY KCG ++ A 
Sbjct: 232 LKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAV 291

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
            VF++M R+D   W+AMIV  A +GHG +++ M  +M +A + PDE+T++G+L AC+HTG
Sbjct: 292 SVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTG 351

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
           +V+EG EYF  MT ++GI P+  HYGCM+DLLGRAG L EA + I  +P+KP  I+W  L
Sbjct: 352 LVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTL 411

Query: 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           L +C  H + EMA++  ++I ELD  +   YV+L N+ A   RWD+   LR+M++D+G  
Sbjct: 412 LSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGAL 471

Query: 584 KTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL-DVGE 642
           K PGCS IE+N VVHEF +GD  H  +  ++  LDE+  +LK  GY+PD S VF  D+ +
Sbjct: 472 KVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIED 531

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E+KE  +  HSEKLA+ +GL+++ PG TIR+VKNLR+CVDCH  AK +S+++ R++I+RD
Sbjct: 532 EEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRD 591

Query: 703 KTRFHHFKHGSCSCKDYW 720
             RFHHFK G CSC DYW
Sbjct: 592 VQRFHHFKDGKCSCGDYW 609



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 136/431 (31%), Positives = 227/431 (52%), Gaps = 41/431 (9%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           + +++ PPS+      ++S I  C S+ +LKQI + TIK     NPTV  KL+ FC S  
Sbjct: 27  NTAALEPPSS-----SILSLIPKCTSLRELKQIQAYTIKTHQ-NNPTVLTKLINFCTSNP 80

Query: 63  --GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
               M +A ++F KIP+P + L+NTM +GY+R D     +L+   +L S + PD+YTF  
Sbjct: 81  TIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSS 140

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           LLK   R  A+E GK+LHC  +K G   +++V   LI+ Y  C +VD AR +FD   +  
Sbjct: 141 LLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPC 200

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           VV +NA+ +   R  + +E   LF E++  G+ PT VT+++ LS+CA L  LD+G+  H 
Sbjct: 201 VVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHE 260

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           YVK+      + +  AL DMYA CG +  A+ +F ++  +D  +W+A++  Y   G    
Sbjct: 261 YVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGS- 319

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
                                         +A+++ REM+ + ++PDE T + IL AC++
Sbjct: 320 ------------------------------QAISMLREMKKAKVQPDEITFLGILYACSH 349

Query: 361 LGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWT 418
            G +E G E+  +   +  +   I     +ID+  + G +E+A +   E+ ++     W 
Sbjct: 350 TGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWR 409

Query: 419 AMIVGLAINGH 429
            ++   + +G+
Sbjct: 410 TLLSSCSSHGN 420


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/717 (35%), Positives = 393/717 (54%), Gaps = 40/717 (5%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           Q+H+   KLG      +QN +V     + GD+  A  VF  I RPS+  WN+MI GYS++
Sbjct: 167 QLHALVSKLGFGMETCIQNSVVGMYV-KCGDVDLAETVFFDIERPSLFCWNSMIYGYSQM 225

Query: 94  ----------------------------DSHKNGV---LIYLDMLKSDVRPDNYTFPFLL 122
                                         H  GV    ++++M      P+  T+  +L
Sbjct: 226 YGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVL 285

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
                   +++G  LH  +L+      +   N LI  Y  CG +D+A+ +F    + D +
Sbjct: 286 SACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHI 345

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WN++ +G       ++   LF +M R  V+     +  +L  C+       G+  H Y 
Sbjct: 346 SWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYT 405

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +  +  +  + NA+  MYA CG+   A  +F  +  ++ ISWTA++T +   G +  AR
Sbjct: 406 IKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKAR 465

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
            YFD MPER+ V W +M+  Y++     E L L+  M+++ ++PD  T  + + ACA+L 
Sbjct: 466 GYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLA 525

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            ++LG  V T+  K  +  ++ V N+++ MY +CG +++A+  F  +  KD  +W AM+ 
Sbjct: 526 IVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLA 585

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
             A NG G K +D F  ML+    P+ ++YV VLS C+H G+V EG+ YF  MT   GI 
Sbjct: 586 AFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGIS 645

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   H+ CMVDLLGRAG L +A ++I+ MP KPN+ VW ALLG+CRVH D  +AE AAK+
Sbjct: 646 PTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKK 705

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           ++ELD +    YVLL N+Y+     DN  ++R+++  +GI+ + GCS IE++  VH F  
Sbjct: 706 LMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTV 765

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
            + SHPQ KE+YLKL+EM   ++  G    +        E    R+   HSEKLA AFGL
Sbjct: 766 DETSHPQIKEVYLKLEEMMKMIEDTGKYITV--------ESSVHRSKKYHSEKLAFAFGL 817

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
           ++    + I ++KNLR+C DCH + KL+S+V  RE+I+RD  RFHHFK G CSCKDY
Sbjct: 818 LNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 147/572 (25%), Positives = 233/572 (40%), Gaps = 108/572 (18%)

Query: 24  ETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP---RPSV 80
             C   H   Q+  +T    + T  T+   LV+        M  A K+F ++P   + SV
Sbjct: 54  SNCGLTHDAFQVFQETHHRNIFTWNTMIRALVS-----SSRMSDAEKLFDEMPVRVKDSV 108

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLK----SDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             W TMI GYS+   H      +  M++         D ++F  ++K            +
Sbjct: 109 S-WTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQ 167

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY----- 191
           LH  V K GF     +QN+++  Y  CG+VD+A  +F    +  +  WN+M  GY     
Sbjct: 168 LHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYG 227

Query: 192 --------KRVKQFDETR------------------KLFGEMERKGVLPTSVTIVLVLSA 225
                    R+ + DE                     +F EM  +G  P  +T   VLSA
Sbjct: 228 PYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSA 287

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           CA   DL  G   H  +   +   +L+  N L DMYA CG +  A  +F +++  D ISW
Sbjct: 288 CASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISW 347

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            +++TG ++ G  +                               +AL LF +M+ S++ 
Sbjct: 348 NSLITGVVHFGLGE-------------------------------DALILFNQMRRSSVV 376

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
            DEF + +IL  C+       GE +  Y  K+ + +   VGNA+I MY KCGD +KA  V
Sbjct: 377 LDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLV 436

Query: 406 FREMLRKDKFTWTAMIVGLA-------------------------------INGHGDKSL 434
           FR M  ++  +WTAMI   +                                NG  ++ L
Sbjct: 437 FRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGL 496

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            ++  M    + PD +T+   + AC    +V  G +     T + G+  N +    +V +
Sbjct: 497 KLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHAT-KFGLSLNVSVANSIVTM 555

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
             R G + EA     ++  K + I W A+L A
Sbjct: 556 YSRCGLIKEAKNTFDSIDDK-DLISWNAMLAA 586



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 133/303 (43%), Gaps = 41/303 (13%)

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER--DYVLWT 317
           MY+ CG    A ++F    ++++ +W  ++   ++  ++  A + FD+MP R  D V WT
Sbjct: 52  MYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWT 111

Query: 318 AMIDGY----LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
            MI GY         F     + R+        D F+  S++ AC +LG   L   +   
Sbjct: 112 TMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHAL 171

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG---------- 423
           + K     +  + N+++ MY KCGDV+ A+ VF ++ R   F W +MI G          
Sbjct: 172 VSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKA 231

Query: 424 ---------------------LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
                                 + +G G + L MF +M      P+ +TY  VLSAC  T
Sbjct: 232 LQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACAST 291

Query: 463 GMVDEGREYFAD-MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
             +  G    A  + ++H ++        ++D+  + G L+ A  V K++  + + I W 
Sbjct: 292 SDLKWGAHLHARILRMEHSLDL--VFGNGLIDMYAKCGCLDLAKRVFKSLR-EHDHISWN 348

Query: 522 ALL 524
           +L+
Sbjct: 349 SLI 351



 Score = 43.9 bits (102), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 6/175 (3%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
             + I  C  +  +K   Q+ +   K GL  N +V N +VT   S  G +K A   F  I
Sbjct: 514 FTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTM-YSRCGLIKEAKNTFDSI 572

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
               +  WN M+  +++       +  + DMLK++ +P++ ++  +L G +    V  GK
Sbjct: 573 DDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGK 632

Query: 136 ELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMF 188
                + + FG   +    + ++      G ++ A+ + + + +K +   W+A+ 
Sbjct: 633 HYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALL 687


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/694 (37%), Positives = 383/694 (55%), Gaps = 44/694 (6%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H   +KLGL    TV N L+   C  +  +  A  VF  +    +  WN++I G ++
Sbjct: 342 QQVHCMALKLGLDLMLTVSNSLINMYCKLR-KIGLARTVFNNMSERDLISWNSVIAGIAQ 400

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVF 151
            D     V +++ +L+  ++PD+YT   +LK  +     +   K++H H +K    +  F
Sbjct: 401 SDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSF 460

Query: 152 VQNALISTY----CLC-GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
           V  ALI  Y    C+   EV   R  FD+      V WNAM SGY +     +T +LF  
Sbjct: 461 VSTALIDAYSRNRCMKEAEVLFGRNNFDL------VAWNAMMSGYTQSHDGHKTLELFAL 514

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M ++G      T+  VL  C  L  ++ GK+ H Y  +     +L + + + DMY  CG+
Sbjct: 515 MHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGD 574

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           M                                 A+  FD +P  D V WT +I G +  
Sbjct: 575 MS-------------------------------AAQFAFDSIPVPDDVAWTTLISGCIEN 603

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
                AL +F +M+   + PDEFTI ++  A + L ALE G  +     K    +D FVG
Sbjct: 604 GEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVG 663

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
            +L+DMY KCG ++ A  +F+ +   +   W AM+VGLA +G G ++L +F QM    I 
Sbjct: 664 TSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIK 723

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD+VT++GVLSAC+H+G+V E  +Y   M   +GI+P   HY C+ D LGRAG + EA  
Sbjct: 724 PDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAEN 783

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
           +I +M M+ ++ ++  LL ACRV  D E  +  A ++LEL+P + + YVLL N+YAA ++
Sbjct: 784 LIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASK 843

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           WD  +  R M+    +KK PG S IE+   +H FV  D+S+PQT+ IY K+ +M  D+K 
Sbjct: 844 WDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQ 903

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            GY+P+     +DV EE+KERA+Y HSEKLA+AFGL+S+ P   IR++KNLR+C DCH  
Sbjct: 904 EGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNA 963

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            K +S VYDRE+++RD  RFH FK G CSC DYW
Sbjct: 964 MKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 242/507 (47%), Gaps = 45/507 (8%)

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           N ++ GY     +   +  ++DM++SD+  D  TF  +L    R  ++  G+++HC  LK
Sbjct: 291 NKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALK 350

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
            G D  + V N+LI+ YC   ++ +AR +F+   + D+++WN++ +G  +     E   L
Sbjct: 351 LGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCL 410

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKD-LDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           F ++ R G+ P   T+  VL A + L + L + K+ H +  +   V +  +  AL D Y+
Sbjct: 411 FMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYS 470

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
               M  A  +FG   N D+++W A+++GY                        T   DG
Sbjct: 471 RNRCMKEAEVLFGR-NNFDLVAWNAMMSGY------------------------TQSHDG 505

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           +       + L LF  M     R D+FT+ ++L  C  L A+  G+ V  Y  K+    D
Sbjct: 506 H-------KTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLD 558

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           ++V + ++DMY KCGD+  AQ  F  +   D   WT +I G   NG  +++L +FSQM  
Sbjct: 559 LWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRL 618

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             ++PDE T   +  A +    +++GR+  A+  ++     +      +VD+  + G ++
Sbjct: 619 MGVLPDEFTIATLAKASSCLTALEQGRQIHAN-ALKLNCTSDPFVGTSLVDMYAKCGSID 677

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI--LELDPDNEAVYVLLCNI 560
           +A  + K + M  N   W A+L     H + + A    KQ+  L + PD     V    +
Sbjct: 678 DAYCLFKRIEMM-NITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDK----VTFIGV 732

Query: 561 YAACNR----WDNFRELRQMILDRGIK 583
            +AC+      + ++ +R M  D GIK
Sbjct: 733 LSACSHSGLVSEAYKYIRSMHRDYGIK 759



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 140/609 (22%), Positives = 254/609 (41%), Gaps = 69/609 (11%)

Query: 42  LGLLTNPT--VQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR-----ID 94
           L L  NP   + N L++   S+ G + YA +VF K+P   +  WN+++  Y++     ++
Sbjct: 73  LALEENPERFLVNNLISMY-SKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVE 131

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
           + K   L++  + +  V     T   +LK       V   +  H +  K G D   FV  
Sbjct: 132 NVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAG 191

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           AL++ Y   G+V   R +F+     DVV WN M   Y  +   +E   L       G+ P
Sbjct: 192 ALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHP 251

Query: 215 TSVTIVLVL------SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
             +T+ L+       S   ++K  + G  A         V  +I  N +   Y   G+  
Sbjct: 252 NEITLRLLSRISGDDSEAGQVKSFENGNDA-------SAVSEIISRNKILSGYLHAGQYS 304

Query: 269 FALEIFGNIKNKD---------VISWTAIVTGYINRGQ---------------------- 297
             L+ F ++   D         ++  TA+    +  GQ                      
Sbjct: 305 ALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLI 364

Query: 298 --------VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
                   + +AR  F+ M ERD + W ++I G  + +   EA+ LF ++    ++PD +
Sbjct: 365 NMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHY 424

Query: 350 TIVSILTACANLG-ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
           T+ S+L A ++L   L L + +  +  K     D FV  ALID Y +   +++A+ +F  
Sbjct: 425 TMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR 484

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
               D   W AM+ G   +  G K+L++F+ M +     D+ T   VL  C     +++G
Sbjct: 485 N-NFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQG 543

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           ++  A   I+ G + +      ++D+  + G ++ A     ++P+ P+ + W  L+  C 
Sbjct: 544 KQVHA-YAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGCI 601

Query: 529 VHRDAEMAEMAAKQ--ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTP 586
            + + E A     Q  ++ + PD E     L    +     +  R++    L       P
Sbjct: 602 ENGEEERALHVFSQMRLMGVLPD-EFTIATLAKASSCLTALEQGRQIHANALKLNCTSDP 660

Query: 587 --GCSMIEM 593
             G S+++M
Sbjct: 661 FVGTSLVDM 669



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 164/384 (42%), Gaps = 47/384 (12%)

Query: 124 GFTRDIA----VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           GF RD      +  GK  H  +L    +   F+ N LIS Y  CG +  AR +FD   + 
Sbjct: 51  GFLRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPER 110

Query: 180 DVVTWNAMFSGYKR-----VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
           D+V+WN++ + Y +     V+   E   LF  + +  V  + +T+  +L  C     +  
Sbjct: 111 DLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCA 170

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
            +  H Y  +  +  +  +  AL ++Y   G++     +F  +  +DV+ W  ++  Y+ 
Sbjct: 171 SESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLE 230

Query: 295 RG----QVDMARQYF----------------------------------DQMPERDYVLW 316
            G     +D++  +                                   D     + +  
Sbjct: 231 MGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISR 290

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
             ++ GYL   ++   L  F +M  S++  D+ T + +L     L +L LG+ V     K
Sbjct: 291 NKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALK 350

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
             +   + V N+LI+MYCK   +  A+ VF  M  +D  +W ++I G+A +    +++ +
Sbjct: 351 LGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCL 410

Query: 437 FSQMLRASIIPDEVTYVGVLSACT 460
           F Q+LR  + PD  T   VL A +
Sbjct: 411 FMQLLRCGLKPDHYTMTSVLKAAS 434



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 7/108 (6%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           +TL + +  ++ +E      Q +QIH+  +KL   ++P V   LV    ++ G +  A  
Sbjct: 629 ATLAKASSCLTALE------QGRQIHANALKLNCTSDPFVGTSLVDM-YAKCGSIDDAYC 681

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           +F++I   ++  WN M+ G ++    K  + ++  M    ++PD  TF
Sbjct: 682 LFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTF 729


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/525 (44%), Positives = 343/525 (65%), Gaps = 7/525 (1%)

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           ++  M    V P   T   +L +      L +G+R H  +    +  +  +  +L +MY+
Sbjct: 49  VYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYS 108

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
           +CG++  A  +F +  +KD+ +W ++V  Y   G +D AR+ FD+MPER+ + W+ +I+G
Sbjct: 109 SCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLING 168

Query: 323 YLRVNRFREALTLFREMQTSN-----IRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           Y+   +++EAL LFREMQ        +RP+EFT+ ++L+AC  LGALE G+WV  YIDK 
Sbjct: 169 YVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKY 228

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDM 436
            V+ DI +G ALIDMY KCG +E+A+RVF  +  +KD   ++AMI  LA+ G  D+   +
Sbjct: 229 HVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQL 288

Query: 437 FSQMLRA-SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           FS+M  + +I P+ VT+VG+L AC H G+++EG+ YF  M  + GI P+  HYGCMVDL 
Sbjct: 289 FSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLY 348

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
           GR+G + EA   I +MPM+P+ ++WG+LL   R+  D +  E A K+++ELDP N   YV
Sbjct: 349 GRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYV 408

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
           LL N+YA   RW   + +R  +  +GI K PGCS +E+ GVVHEFV GD+S  +++ IY 
Sbjct: 409 LLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYA 468

Query: 616 KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
            LDE+   L+  GY+ D  EV LD+ E+DKE A+  HSEKLA+AF L+ + PG  +RI+K
Sbjct: 469 MLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIK 528

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH + K++S ++ RE++VRD  RFHHF+ GSCSC+D+W
Sbjct: 529 NLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 169/386 (43%), Gaps = 76/386 (19%)

Query: 82  LWNTMIKG----YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
           LWN +I+      S    H + + +YL M    V PD +TFPFLL  F   + +  G+  
Sbjct: 26  LWNIIIRAIVHNVSSPQRH-SPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRT 84

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H  +L FG D   FV+ +L++ Y  CG++  A+ +FD S   D+  WN++ + Y +    
Sbjct: 85  HAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLI 144

Query: 198 DETRKLFGEMERKGVL------------------------------------PTSVTIVL 221
           D+ RKLF EM  + V+                                    P   T+  
Sbjct: 145 DDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMST 204

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI-KNK 280
           VLSAC +L  L+ GK  H Y+ +  +  +++L  AL DMYA CG +  A  +F  +   K
Sbjct: 205 VLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKK 264

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           DV +++A++      G  D                               E   LF EM 
Sbjct: 265 DVKAYSAMICCLAMYGLTD-------------------------------ECFQLFSEMT 293

Query: 341 TS-NIRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           TS NI P+  T V IL AC + G +  G+ + K  I++  +   I     ++D+Y + G 
Sbjct: 294 TSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGL 353

Query: 399 VEKAQRVFREM-LRKDKFTWTAMIVG 423
           +++A+     M +  D   W +++ G
Sbjct: 354 IKEAESFIASMPMEPDVLIWGSLLSG 379



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 140/300 (46%), Gaps = 18/300 (6%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-----KSDVRPD 114
           ++ G +  A K+F ++P  +V  W+ +I GY     +K  + ++ +M      ++ VRP+
Sbjct: 139 AKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPN 198

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174
            +T   +L    R  A+E GK +H ++ K+  +  + +  ALI  Y  CG ++ A+ +F+
Sbjct: 199 EFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFN 258

Query: 175 -VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDL 232
            +  K DV  ++AM          DE  +LF EM     + P SVT V +L AC     +
Sbjct: 259 ALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLI 318

Query: 233 DVGKRAHR-YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVT 290
           + GK   +  ++E  I P++     + D+Y   G +  A     ++    DV+ W ++++
Sbjct: 319 NEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLS 378

Query: 291 GYINRGQVDMARQYFDQMPERD------YVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           G    G +        ++ E D      YVL + +   Y +  R+ E   +  EM+   I
Sbjct: 379 GSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNV---YAKTGRWMEVKCIRHEMEVKGI 435



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 72/270 (26%)

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           ++++  M+   + PD  T   +L +  N   L LG+     I    +  D FV  +L++M
Sbjct: 47  ISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNM 106

Query: 393 YCKCGDVEKAQRV-------------------------------FREMLRKDKFTWTAMI 421
           Y  CGD+  AQRV                               F EM  ++  +W+ +I
Sbjct: 107 YSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLI 166

Query: 422 VGLAINGHGDKSLDMFSQML-----RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
            G  + G   ++LD+F +M       A + P+E T   VLSAC   G +++G+   A + 
Sbjct: 167 NGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYID 226

Query: 477 IQH-------------------------------GIEPNEAHYGCMVDLLGRAGHLNEAL 505
             H                               G + +   Y  M+  L   G  +E  
Sbjct: 227 KYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECF 286

Query: 506 EVIKNMP----MKPNSIVWGALLGACRVHR 531
           ++   M     + PNS+ +  +LGAC VHR
Sbjct: 287 QLFSEMTTSDNINPNSVTFVGILGAC-VHR 315


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/703 (35%), Positives = 390/703 (55%), Gaps = 33/703 (4%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           ++S + +   +   KQIH   ++ G     +V N  +     + G + YA ++F ++   
Sbjct: 303 ILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYV-KAGSVNYARRMFGQMKEV 361

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-DIAVEFGKEL 137
            +  WNT+I G +R    +  + +++D+L+S + PD +T   +L+  +  + +   G+++
Sbjct: 362 DLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQV 421

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H   LK G     FV  ALI  Y   G+++ A  +F      D+ +WNAM  G+     +
Sbjct: 422 HTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNY 481

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
            E  +LF  M  +G     +T      A   L  L  GK+ H  V + +   +L + + +
Sbjct: 482 REALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGI 541

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            DMY  CGEM                                 AR+ F+Q+P  D V WT
Sbjct: 542 LDMYLKCGEM-------------------------------KSARKVFNQIPSPDDVAWT 570

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
            +I G +      +AL  + +M+ + ++PDE+T  +++ AC+ L ALE G+ +   I K 
Sbjct: 571 TVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKL 630

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
               D FV  +L+DMY KCG++E A  +FR M  +    W AMIVGLA +G+ +++L+ F
Sbjct: 631 NCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFF 690

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           ++M    + PD VT++GVLSAC+H+G+  +  + F  M   +G+EP   HY C+VD L R
Sbjct: 691 NEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSR 750

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
           AGH+ EA +V+ +MP + ++ ++  LL ACRV  D E  E  A+++  +DP + A YVLL
Sbjct: 751 AGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLL 810

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            NIYAA N+W+N    R M+    +KK PG S I+M   VH FVAGD+SH +T  IY K+
Sbjct: 811 SNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKV 870

Query: 618 DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
           + +   +K  GY+PD     +D+ EEDKE A+  HSEKLA+A+GL+ + P  T+R++KNL
Sbjct: 871 EYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNL 930

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+C DCH   K +S V+ RE+++RD  RFHHF+ G CSC DYW
Sbjct: 931 RVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 146/619 (23%), Positives = 258/619 (41%), Gaps = 59/619 (9%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           M    S+SP S L Q   ++        +   K+ H+  +  GL  +  V N L+T   +
Sbjct: 1   MSRKCSVSPSSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMY-A 59

Query: 61  EKGDMKYACKVFRKIPRPS--VCLWNTMIKGYSR------IDSHKNGVLIYLDMLKSDVR 112
           + G +  A K+F   P+    +  +N ++  Y+       ++       I+  + +S + 
Sbjct: 60  KCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVML 119

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
              +T   L K      +    + L  + +K G    VFV  AL++ Y     +  AR +
Sbjct: 120 TTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVL 179

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL--- 229
           FD     DVV WN M   Y  +   DE   LF    R G+ P  V++  +L    K    
Sbjct: 180 FDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVF 239

Query: 230 -KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN-IKNK---DVIS 284
            ++L+  +     +  C    ++ + N     Y   GE   A++ F + IK++   D ++
Sbjct: 240 ERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLT 299

Query: 285 WTAI-----------------------------------VTGYINRGQVDMARQYFDQMP 309
           +  I                                   +  Y+  G V+ AR+ F QM 
Sbjct: 300 YIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMK 359

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL-GALELGE 368
           E D + W  +I G  R      +L LF ++  S + PD+FTI S+L AC++L  +  +G 
Sbjct: 360 EVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGR 419

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            V T   K  +  D FV  ALID+Y K G +E+A+ +F      D  +W AM+ G  ++ 
Sbjct: 420 QVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSD 479

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
           +  ++L +FS M       D++T+     A      + +G++  A + I+     +    
Sbjct: 480 NYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHA-VVIKMRFHYDLFVI 538

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ--ILEL 546
             ++D+  + G +  A +V   +P  P+ + W  ++  C  + + E A     Q  +  +
Sbjct: 539 SGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGV 597

Query: 547 DPDNE--AVYVLLCNIYAA 563
            PD    A  V  C++  A
Sbjct: 598 QPDEYTFATLVKACSLLTA 616


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/609 (39%), Positives = 349/609 (57%), Gaps = 32/609 (5%)

Query: 113  PDNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
            P + T P  LK  +R    +  G++LH   LK    ++  V  +L+S Y  CG +  A+ 
Sbjct: 523  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 582

Query: 172  IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
            +FD       V W A+ + Y       E   +       G+ P S T V VL+ACA++ D
Sbjct: 583  VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 642

Query: 232  LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
            L  G+   R  ++  +  ++ +  A  D+Y  CGEM                        
Sbjct: 643  LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMA----------------------- 679

Query: 292  YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
                     AR+ FD+M  +D V W AM+ GY      REAL LF  MQ   ++PD + +
Sbjct: 680  --------KAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAV 731

Query: 352  VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
               L+AC  LGAL+LG      +D ++  ++  +G ALIDMY KCG   +A  VF++M +
Sbjct: 732  AGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRK 791

Query: 412  KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
            KD   W AMI+GL + GH   +  +  QM ++ +  ++ T++G+L +CTHTG++ +GR Y
Sbjct: 792  KDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRY 851

Query: 472  FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531
            F +MT  + I P   HYGCMVDLL RAG L EA +++ +MPM  N+++ GALLG C++HR
Sbjct: 852  FHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHR 911

Query: 532  DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMI 591
            + E+AE   KQ++ L+P N   YV+L NIY+   RW++  +LR  +  +G++K P CS +
Sbjct: 912  NTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWV 971

Query: 592  EMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQ 651
            E  G VHEF  GDKSHP + +IY KLDE+  ++K +GY P    V  DV +E+KE  +  
Sbjct: 972  EFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVH 1031

Query: 652  HSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH 711
            HSEKLA+AF L+ +GPG TIR+ KNLR+C DCH   KLVS +  RE+IVRD  RFH F+ 
Sbjct: 1032 HSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRD 1091

Query: 712  GSCSCKDYW 720
            GSCSC DYW
Sbjct: 1092 GSCSCNDYW 1100



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 184/420 (43%), Gaps = 37/420 (8%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           PS LT    L S       +   +Q+H++++KL   TNP V   L++   ++ G +  A 
Sbjct: 523 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLY-AKCGLLHRAQ 581

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF ++P PS   W  +I  Y      +  V +  +   + +RPD++T   +L    R  
Sbjct: 582 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 641

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            +  G+ +     + G   SVFV  A +  Y  CGE+  AR +FD     D V W AM  
Sbjct: 642 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 701

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY       E   LF  M+ +G+ P    +   LSAC +L  LD+G++A R V   + + 
Sbjct: 702 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 761

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           N +L  AL DMYA CG    A  +F  ++ KD+I W A++ G    G   +         
Sbjct: 762 NPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI--------- 812

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-E 368
                                 A  L  +M+ S ++ ++ T + +L +C + G ++ G  
Sbjct: 813 ----------------------AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 850

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           +         +   I     ++D+  + G +++A ++  +M         A+I+G  + G
Sbjct: 851 YFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDM----PMPANAVILGALLGG 906


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/536 (43%), Positives = 333/536 (62%), Gaps = 31/536 (5%)

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N+M   Y    +   +  ++ +M + G+ P S T   VL + A+L   ++GK  H  + +
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                N+ +  AL +MY  C                                 V  ARQ 
Sbjct: 171 MGFESNVYVSTALVNMYGTCSS-------------------------------VSDARQV 199

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           FD++P+R+ V W A+I GY     FR+ + +FREMQ +  +P E T+V +L ACA+LGAL
Sbjct: 200 FDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGAL 259

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
             G W+  YID N+++ ++FVG ALIDMY KCG V++A+++F+ M  K+ +TW  +I G 
Sbjct: 260 NQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGY 319

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A+NG G+ +L  FS+M+     PDEVT++GVL AC H G+V+EGR YF  M  + G+ P 
Sbjct: 320 AMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPR 379

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGCMVDLLGRAG L+EA ++I+ M M+P+ I+W  LLGACR+H + ++ E A K++L
Sbjct: 380 IEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLL 439

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           EL+P+N   YVLL N+YA   RWD   E+R+M+  R ++K PGCS IE++ VV+EFV  +
Sbjct: 440 ELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSN 499

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
              P  +E+Y  L +M   LK  GY+ D      D+ EE+KE ++  HSEKLA+AFGL+ 
Sbjct: 500 YIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLK 559

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S  G+T+RIVKNLR+C DCH   K+VS VY R++ VRD+ RFHHF  G+CSCKDYW
Sbjct: 560 SPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 209/451 (46%), Gaps = 53/451 (11%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMH-----------QLKQIHSQTIKLGLLTNPTVQN 52
           N +I P ST +  T   +P +  ES H            + Q+ SQ I   +  +     
Sbjct: 21  NLTIRPSST-SALTLCENPPQITESKHSHLTKSISNHAHMNQMLSQMIMNYIPIDHLNLM 79

Query: 53  KLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112
           KL+ F  S  G    A    +        L N+MI+ Y+  + H + V IY  M K+ + 
Sbjct: 80  KLIDFSVSSHGFAASALLFTQFYGFIDSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIF 139

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           PD+ TFP +LK   +    E GK +HC +++ GF+S+V+V  AL++ Y  C  V  AR +
Sbjct: 140 PDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQV 199

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           FD     ++V+WNA+ +GY   + F +   +F EM+  G  P  VT+V VL ACA L  L
Sbjct: 200 FDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGAL 259

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
           + G+    Y+   ++  N+ +  AL DMYA CG +  A +IF  ++ K+V +W  +++GY
Sbjct: 260 NQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGY 319

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G                               R   AL  F  M     +PDE T +
Sbjct: 320 AMNG-------------------------------RGESALQAFSRMIMEKFKPDEVTFL 348

Query: 353 SILTACANLGALELGEWVKTYIDKNK----VKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            +L AC + G +  G   +TY    K    ++  I     ++D+  + G +++AQ++ + 
Sbjct: 349 GVLCACCHQGLVNEG---RTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQA 405

Query: 409 M-LRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           M ++ D   W  ++    I  HG+  L  F+
Sbjct: 406 MSMQPDPIIWRELLGACRI--HGNIQLGEFA 434



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 131/257 (50%), Gaps = 7/257 (2%)

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D  L  +MI  Y   N+   ++ ++ +M  + I PD  T  ++L + A L   ELG+ + 
Sbjct: 106 DSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIH 165

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
             I +   +++++V  AL++MY  C  V  A++VF E+  ++  +W A+I G   N    
Sbjct: 166 CCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFR 225

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           K +D+F +M  A   P EVT VGVL AC H G +++GR +  D    + +  N      +
Sbjct: 226 KVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGR-WIDDYIDHNRLRLNVFVGTAL 284

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA-AKQILE-LDPD 549
           +D+  + G ++EA ++ K M +K N   W  L+    ++   E A  A ++ I+E   PD
Sbjct: 285 IDMYAKCGVVDEAEKIFKAMRVK-NVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPD 343

Query: 550 NEAVYVLLCNIYAACNR 566
                 +LC   A C++
Sbjct: 344 EVTFLGVLC---ACCHQ 357


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/595 (40%), Positives = 370/595 (62%), Gaps = 15/595 (2%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLC-----GEVDMARGIFDVSYKDDVVTWNAMFS 189
           K+ H  +L+ G  ++    +A+   +  C     G+++ A  +F      D   +N +F 
Sbjct: 19  KQQHSLLLRLGLSTN---NHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNTLFK 75

Query: 190 GYKRVKQFDETRKLF-GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
            +  + Q      LF   M +  V P + T   ++ AC KL++    K+ H +V +    
Sbjct: 76  AFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRAC-KLEE--EAKQLHAHVLKFGFG 132

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            +    N L  +Y A G +  A  +F  + + +V+SWT++V+GY   G VD A + F+ M
Sbjct: 133 GDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELM 192

Query: 309 P-ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALEL 366
           P +++ V W AMI  +++ NRFREA  LFR M+    +  D F   ++L+AC  +GALE 
Sbjct: 193 PCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQ 252

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G W+  Y++K  +  D  +   +IDMYCKCG ++KA  VF  +  K   +W  MI G A+
Sbjct: 253 GMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAM 312

Query: 427 NGHGDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           +G G+ ++ +F +M   +++ PD +T+V VL+AC H+G+V+EG  YF  M   HGI+P +
Sbjct: 313 HGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTK 372

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HYGCMVDLL RAG L EA +VI  MPM P++ V GALLGACR+H + E+ E    +++E
Sbjct: 373 EHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIE 432

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           LDP+N   YV+L N+YA+C +W+    +R+++ DRG+KK PG SMIEM GVV+EFVAG +
Sbjct: 433 LDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGR 492

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
            HP  + IY K+ EM   ++ VG++PD   V  D+ EE++E  ++ HSEKLA+A+GL+ +
Sbjct: 493 DHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYGLLKT 552

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             G T+R+ KNLR+C DCH+ +K++S VYD ++I+RD++RFHHF +G CSCKDYW
Sbjct: 553 KRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 208/449 (46%), Gaps = 74/449 (16%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRP 78
           + P   C SM ++KQ HS  ++LGL TN    +++ TFC  S+ GD+ YA K+F  +P P
Sbjct: 6   VPPPWACSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNP 65

Query: 79  SVCLWNTMIKGYSRIDSHKN-GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
              L+NT+ K +  +    +  +L Y  ML+  V P+ +TFP L++    +   E  K+L
Sbjct: 66  DTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLE---EEAKQL 122

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H HVLKFGF    +  N LI  Y   G +D AR +F      +VV+W ++ SGY +    
Sbjct: 123 HAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLV 182

Query: 198 DETRKLFGEM----------------------------------ERKGVLPTSVTIVLVL 223
           DE  ++F  M                                  E+K  L   V   + L
Sbjct: 183 DEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATM-L 241

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           SAC  +  L+ G   H+YV++  IV +  L   + DMY  CG +  A  +F  +K K V 
Sbjct: 242 SACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVS 301

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTS 342
           SW  ++ G+   G+ +                               +A+ LF+EM + +
Sbjct: 302 SWNCMIGGFAMHGKGE-------------------------------DAIRLFKEMEEEA 330

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTY-IDKNKVKNDIFVGNALIDMYCKCGDVEK 401
            + PD  T V++LTACA+ G +E G +   Y +D + +         ++D+  + G +E+
Sbjct: 331 MVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEE 390

Query: 402 AQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           A++V  EM +  D     A++    I+G+
Sbjct: 391 AKKVIDEMPMSPDAAVLGALLGACRIHGN 419


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/683 (37%), Positives = 373/683 (54%), Gaps = 64/683 (9%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRD 128
           +F  + +  +  +N +I G+S   SH   V +YL +L++D  VRP   T   ++   +  
Sbjct: 94  LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASAL 153

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYC--------------------------- 161
                GK+ HC +L+ GF ++ FV + L+  Y                            
Sbjct: 154 GDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMI 213

Query: 162 ----LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
                C  V+ AR +F+V    D +TW  M +G+ +     E  ++F  M  +G+     
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQY 273

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T   +L+AC  L  L+ GK+ H Y+   +   N+ + +AL DMY+ C  +  A  +F  +
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRM 333

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
             K++IS                               WTA+I GY +     EA+ +F 
Sbjct: 334 TCKNIIS-------------------------------WTALIVGYGQNGCSEEAVRVFS 362

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
           EMQ   I PD++T+ S++++CANL +LE G         + + + I V NAL+ +Y KCG
Sbjct: 363 EMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCG 422

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            +E A R+F EM   D+ +WTA++ G A  G   +++D+F +ML   + PD VT++GVLS
Sbjct: 423 SIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLS 482

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           AC+  G V++GR YF  M   HGI P + HY CM+DL  R+G L EA E IK MPM P++
Sbjct: 483 ACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDA 542

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
           I WG LL ACR+  D E+ + AA+ +LE+DP N A YVLLC+++AA  +W+   +LR+ +
Sbjct: 543 IGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGM 602

Query: 578 LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF 637
            DR +KK PGCS I+    VH F A D+SHP +K IY KL+ + S +   GY PD+S V 
Sbjct: 603 RDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVL 662

Query: 638 LDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDRE 697
            DV + DK   V  HSEKLA+AFGLI     + IRIVKNLR+CVDCH   K +S +  R+
Sbjct: 663 HDVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRD 722

Query: 698 VIVRDKTRFHHFKHGSCSCKDYW 720
           ++VRD  RFH F  G CSC D+W
Sbjct: 723 ILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/491 (27%), Positives = 235/491 (47%), Gaps = 43/491 (8%)

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMAR 170
           RP +  +  LL    R         LHC +L+        ++ N L++ Y   G    AR
Sbjct: 3   RPLSSQYAALLSAAAR-TEPHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARAR 61

Query: 171 GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL----------------- 213
            +FD     ++ T+NA+ S     +   +   LF  M ++ ++                 
Sbjct: 62  RVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQ 121

Query: 214 ----------------PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
                           P+ +T+  ++ A + L D  +GK+ H  +       N  + + L
Sbjct: 122 AVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPL 181

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            DMYA    +G A   F  + +K+V+ +  ++TG +    V+ AR+ F+ M +RD + WT
Sbjct: 182 VDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWT 241

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
            M+ G+ +     EAL +FR M+   I  D++T  SILTAC  L ALE G+ +  YI + 
Sbjct: 242 TMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT 301

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
           +  +++FVG+AL+DMY KC  ++ A+ VFR M  K+  +WTA+IVG   NG  ++++ +F
Sbjct: 302 RYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVF 361

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           S+M R  I PD+ T   V+S+C +   ++EG ++   + +  G+         +V L G+
Sbjct: 362 SEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHC-LALVSGLMHYITVSNALVTLYGK 420

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAAKQILE-LDPDNEAVYV 555
            G + +A  +   M    + + W AL+ G  +  R  E  ++  K + + + PD     V
Sbjct: 421 CGSIEDAHRLFDEMSFH-DQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDG----V 475

Query: 556 LLCNIYAACNR 566
               + +AC+R
Sbjct: 476 TFIGVLSACSR 486



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 188/431 (43%), Gaps = 69/431 (16%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCC--SEKGDMKYA---------------------C 69
           KQ H Q ++LG   N  V + LV      S  GD K A                     C
Sbjct: 160 KQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRC 219

Query: 70  K-------VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           K       +F  +       W TM+ G+++       + I+  M    +  D YTF  +L
Sbjct: 220 KMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSIL 279

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
                  A+E GK++H ++++  +D +VFV +AL+  Y  C  + +A  +F      +++
Sbjct: 280 TACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNII 339

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +W A+  GY +    +E  ++F EM+R G+ P   T+  V+S+CA L  L+ G + H   
Sbjct: 340 SWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLA 399

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
               ++  + + NAL  +Y  CG +  A  +F  +   D +SWTA+V+GY   G      
Sbjct: 400 LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFG------ 453

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                    R +E + LF +M    ++PD  T + +L+AC+  G
Sbjct: 454 -------------------------RAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAG 488

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGN----ALIDMYCKCGDVEKAQRVFREM-LRKDKFTW 417
            +E G   ++Y    +  + I   +     +ID+Y + G +++A+   ++M +  D   W
Sbjct: 489 FVEKG---RSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGW 545

Query: 418 TAMIVGLAING 428
             ++    + G
Sbjct: 546 GTLLSACRLRG 556



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 158/329 (48%), Gaps = 12/329 (3%)

Query: 27  ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
            ++ Q KQIH+  I+     N  V + LV    S+   +K A  VFR++   ++  W  +
Sbjct: 286 SALEQGKQIHAYIIRTRYDDNVFVGSALVDMY-SKCRSIKLAETVFRRMTCKNIISWTAL 344

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           I GY +    +  V ++ +M +  + PD+YT   ++       ++E G + HC  L  G 
Sbjct: 345 IVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGL 404

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
              + V NAL++ Y  CG ++ A  +FD     D V+W A+ SGY +  +  ET  LF +
Sbjct: 405 MHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEK 464

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACG 265
           M  KGV P  VT + VLSAC++   ++ G+   H   K+  IVP       + D+Y+  G
Sbjct: 465 MLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSG 524

Query: 266 EMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTA 318
           ++  A E    +  + D I W  +++    RG +++ +   + + E D      YVL  +
Sbjct: 525 KLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCS 584

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPD 347
           M   +    ++ E   L R M+   ++ +
Sbjct: 585 M---HAAKGQWNEVAQLRRGMRDRQVKKE 610



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 40/268 (14%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L S I +C ++  L+   Q H   +  GL+   TV N LVT    + G ++ A ++F ++
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTL-YGKCGSIEDAHRLFDEM 434

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  W  ++ GY++    K  + ++  ML   V+PD  TF  +L   +R   VE G+
Sbjct: 435 SFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGR 494

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
                                  +Y    + D   GI  +   DD   +  M   Y R  
Sbjct: 495 -----------------------SYFHSMQKD--HGIVPI---DD--HYTCMIDLYSRSG 524

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP-NLILE 254
           +  E  +   +M    + P ++    +LSAC    D+++GK A   + E  I P N    
Sbjct: 525 KLKEAEEFIKQMP---MHPDAIGWGTLLSACRLRGDMEIGKWAAENLLE--IDPQNPASY 579

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDV 282
             L  M+AA G+     ++   ++++ V
Sbjct: 580 VLLCSMHAAKGQWNEVAQLRRGMRDRQV 607


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/609 (39%), Positives = 349/609 (57%), Gaps = 32/609 (5%)

Query: 113  PDNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
            P + T P  LK  +R    +  G++LH   LK    ++  V  +L+S Y  CG +  A+ 
Sbjct: 547  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 606

Query: 172  IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
            +FD       V W A+ + Y       E   +       G+ P S T V VL+ACA++ D
Sbjct: 607  VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 666

Query: 232  LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
            L  G+   R  ++  +  ++ +  A  D+Y  CGEM                        
Sbjct: 667  LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMA----------------------- 703

Query: 292  YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
                     AR+ FD+M  +D V W AM+ GY      REAL LF  MQ   ++PD + +
Sbjct: 704  --------KAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAV 755

Query: 352  VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
               L+AC  LGAL+LG      +D ++  ++  +G ALIDMY KCG   +A  VF++M +
Sbjct: 756  AGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRK 815

Query: 412  KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
            KD   W AMI+GL + GH   +  +  QM ++ +  ++ T++G+L +CTHTG++ +GR Y
Sbjct: 816  KDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRY 875

Query: 472  FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531
            F +MT  + I P   HYGCMVDLL RAG L EA +++ +MPM  N+++ GALLG C++HR
Sbjct: 876  FHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHR 935

Query: 532  DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMI 591
            + E+AE   KQ++ L+P N   YV+L NIY+   RW++  +LR  +  +G++K P CS +
Sbjct: 936  NTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWV 995

Query: 592  EMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQ 651
            E  G VHEF  GDKSHP + +IY KLDE+  ++K +GY P    V  DV +E+KE  +  
Sbjct: 996  EFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVH 1055

Query: 652  HSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH 711
            HSEKLA+AF L+ +GPG TIR+ KNLR+C DCH   KLVS +  RE+IVRD  RFH F+ 
Sbjct: 1056 HSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRD 1115

Query: 712  GSCSCKDYW 720
            GSCSC DYW
Sbjct: 1116 GSCSCNDYW 1124



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 184/420 (43%), Gaps = 37/420 (8%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           PS LT    L S       +   +Q+H++++KL   TNP V   L++   ++ G +  A 
Sbjct: 547 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLY-AKCGLLHRAQ 605

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF ++P PS   W  +I  Y      +  V +  +   + +RPD++T   +L    R  
Sbjct: 606 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 665

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            +  G+ +     + G   SVFV  A +  Y  CGE+  AR +FD     D V W AM  
Sbjct: 666 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 725

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY       E   LF  M+ +G+ P    +   LSAC +L  LD+G++A R V   + + 
Sbjct: 726 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 785

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           N +L  AL DMYA CG    A  +F  ++ KD+I W A++ G    G   +         
Sbjct: 786 NPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI--------- 836

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-E 368
                                 A  L  +M+ S ++ ++ T + +L +C + G ++ G  
Sbjct: 837 ----------------------AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRR 874

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           +         +   I     ++D+  + G +++A ++  +M         A+I+G  + G
Sbjct: 875 YFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDM----PMPANAVILGALLGG 930


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/746 (35%), Positives = 395/746 (52%), Gaps = 61/746 (8%)

Query: 32  LKQIHSQTIKLGLLT-----------NPTVQNKLVTFCCSEKGDMKYACKVFRKIP--RP 78
           L+ IH  T+   L T            P     LV    +  G ++ A   F  +P  R 
Sbjct: 67  LRLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVA-AHAAAGRLRDAAAFFDAVPPARR 125

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLK--GFTRDIAVEFGK 135
              L N M+  ++R       V ++  +L S  +RPD+Y+F  L+   G   ++A     
Sbjct: 126 DTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCT 185

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLC-------------------------------- 163
           +LHC VLK G  + + V NALI+ Y  C                                
Sbjct: 186 QLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYV 245

Query: 164 --GEVDMARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
             G+V+ AR +F+ V  K DVV WNAM SGY +     +  +LF  M  + V     T  
Sbjct: 246 RRGDVNAARSVFEEVDGKFDVV-WNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 304

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE------NALTDMYAACGEMGFALEIF 274
            VLSACA       GK  H  +   ++ PN + E      NAL  +Y+  G++  A  IF
Sbjct: 305 SVLSACANAGFFVHGKSVHGQI--IRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIF 362

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
             +  KDV+SW  I++GYI+ G +D A + F  MP ++ + W  M+ GY+      +AL 
Sbjct: 363 DTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALK 422

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LF +M+  +++P ++T    + AC  LGAL+ G  +  ++ +   +     GNAL+ MY 
Sbjct: 423 LFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYA 482

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
           KCG V  A+ VF  M   D  +W AMI  L  +GHG ++L++F QM+   I PD ++++ 
Sbjct: 483 KCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLT 542

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           +L+AC H G+VDEG  YF  M    GI P E HY  ++DLLGR+G + EA ++IK MP +
Sbjct: 543 ILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFE 602

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
           P   +W A+L  CR + D E    AA Q+  + P ++  Y+LL N Y+A  RW +   +R
Sbjct: 603 PTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVR 662

Query: 575 QMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS 634
           +++ DRG+KK PGCS IE+   +H F+ GD  HP+ +E+Y  L+ + + ++ +GY+PD  
Sbjct: 663 KLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTK 722

Query: 635 EVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVY 694
            V  D+   +KE  ++ HSEKLA+ FGL+   PG T+ ++KNLR+C DCH     +S   
Sbjct: 723 FVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAV 782

Query: 695 DREVIVRDKTRFHHFKHGSCSCKDYW 720
            RE++VRD  RFHHFK G CSC +YW
Sbjct: 783 GREIVVRDVRRFHHFKDGECSCGNYW 808


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/467 (48%), Positives = 318/467 (68%), Gaps = 4/467 (0%)

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N++   YA  G++G A  +F  +     ++WT++V G+   G V+ AR+ F++MPERD V
Sbjct: 81  NSMIHGYAVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLV 140

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W AMI G +      EAL LFR M      P+  T+VS+L+AC   GALE G+WV  ++
Sbjct: 141 SWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFV 200

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           +K +++ D F+G AL+DMY KCG VE A  VF  +  ++  TW AMI GLA+NG+  K+L
Sbjct: 201 EKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKAL 260

Query: 435 DMFSQM-LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           DMF QM L  ++ PDEVT+VGVL AC+H G VD G+E+F  +  ++G+E    HY CMVD
Sbjct: 261 DMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVD 320

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           LL R+GHL EA ++I  MPMKP+ +VW ALLG CR+H++ +MAE     I E++      
Sbjct: 321 LLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAE---NVISEMEATCSGD 377

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           +VLL N+YAA  RW+   ++R+ +  +GI+K PGCS +EM+G +HEF++GDKSHP   +I
Sbjct: 378 HVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDI 437

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
           + KL E+   ++  GY+ + +EVF D+ +E+KE+A+  HSEKLA+AFGLI   P  TIRI
Sbjct: 438 HAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEATIRI 497

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           VKNLR C DCH  AKLVS +Y RE++VRD+ RFHHF+ G+CSC D+W
Sbjct: 498 VKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 183/414 (44%), Gaps = 74/414 (17%)

Query: 30  HQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
           H L  +H+   KLG L      N  +   CS  G +  A +VF  +PR     +N+MI G
Sbjct: 28  HHLPSLHAVCTKLGFLLCTRTNNAFIQGYCS-AGRVTDARRVFDGMPRRDTVSFNSMIHG 86

Query: 90  YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
           Y+               +  DV      F  +L                          +
Sbjct: 87  YA---------------VSGDVGSAQRLFERVLA------------------------PT 107

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
                ++++ +C  G+V+ AR +F+   + D+V+WNAM SG    +   E   LF  M  
Sbjct: 108 PVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMME 167

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
           +G +P   T+V VLSAC     L+ GK  H +V++ ++  +  L  AL DMYA CG +  
Sbjct: 168 EGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVEL 227

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           ALE+F  ++ ++  +W A++ G                            ++GY      
Sbjct: 228 ALEVFTGLRARNTCTWNAMINGL--------------------------AMNGY-----S 256

Query: 330 REALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGN 387
            +AL +FR+M+    + PDE T V +L AC++ G ++ G E   T   K  V+  +    
Sbjct: 257 AKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYA 316

Query: 388 ALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            ++D+  + G +++A ++  EM ++ D   W A++ G  ++ +   + ++ S+M
Sbjct: 317 CMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEM 370



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 134/308 (43%), Gaps = 12/308 (3%)

Query: 44  LLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIY 103
           L   P     +V   C   GD++ A +VF ++P   +  WN MI G          + ++
Sbjct: 104 LAPTPVTWTSMVAGFC-RAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLF 162

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
             M++    P+  T   +L   T   A+E GK +H  V K       F+  AL+  Y  C
Sbjct: 163 RWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKC 222

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLV 222
           G V++A  +F      +  TWNAM +G        +   +F +ME  G V P  VT V V
Sbjct: 223 GAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGV 282

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILEN--ALTDMYAACGEMGFALEIFGNIKNK 280
           L AC+    +D GK  H Y    K    LILE+   + D+ A  G +  A ++   +  K
Sbjct: 283 LLACSHAGFVDAGKE-HFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMK 341

Query: 281 -DVISWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLF 336
            DV+ W A++ G      V MA     +M      D+VL + +   Y  V R+     + 
Sbjct: 342 PDVVVWRALLGGCRLHKNVKMAENVISEMEATCSGDHVLLSNL---YAAVGRWNGVEDVR 398

Query: 337 REMQTSNI 344
           R M++  I
Sbjct: 399 RTMRSKGI 406


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/655 (37%), Positives = 380/655 (58%), Gaps = 12/655 (1%)

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           +A ++F  +P   V  WN M+   S+    +  + + +DM    VR D+ T+   L    
Sbjct: 222 HALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACA 281

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           R  ++ +GK+LH  V++       +V +AL+  Y   G    A+G+F+  +  + V W  
Sbjct: 282 RLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTV 341

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + SG+ +   F E+ +LF +M  + +      +  ++S C    DL +G++ H    +  
Sbjct: 342 LISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSG 401

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
            +  +++ N+L  MYA C  +  A  IF  +  KD++SWT+++T Y   G V  AR++FD
Sbjct: 402 QIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD 461

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALE 365
            M E++ + W AM+  Y++     + L +++ M +   +RPD  T V++   CA+LGA +
Sbjct: 462 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 521

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
           LG+ +     K  +  D  V NA+I MY KCG + +A++VF  +  KD  +W AMI G +
Sbjct: 522 LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 581

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            +G G +++++F  +L+    PD ++YV VLS C+H+G+V EG+ YF  M   H I P  
Sbjct: 582 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGL 641

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            H+ CMVDLLGRAGHL EA ++I +MPMKP + VWGALL AC++H + E+AE+AAK + E
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 701

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           LD  +   Y+L+  IYA   + D+  ++R+++ D+GIKK PG S +E++  VH F A D 
Sbjct: 702 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDV 761

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           SHPQ   I  KLDE+   +  +GY+             D  R+   HSEKLA+AFGL++ 
Sbjct: 762 SHPQVLAIRKKLDELMEKIARLGYV-----------RTDSTRSEIHHSEKLAVAFGLMTL 810

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              + I I+KNLR+C DCH + KL+S V  RE ++RD  RFHHF  GSCSC DYW
Sbjct: 811 PTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 198/460 (43%), Gaps = 64/460 (13%)

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF--DVSYKD---------------- 179
           H  ++  G  S+VF+QN L+  Y  CG +  AR +   D+++ +                
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 180 --------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLS 224
                         DV +WN + SGY + +Q+  + + F  M R G   P + T+   + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           +C  L    +  +    V++     +  +  AL DM+  CG +  A  +F  IK   +  
Sbjct: 147 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 206

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
             +++ GY+    VD A + FD MPERD V W  M+    +  R REAL +  +MQ+  +
Sbjct: 207 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           R D  T  S LTACA L +L  G+ +   + +N    D +V +AL+++Y K G  ++A+ 
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 326

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           VF  +  ++   WT +I G    G   +S+++F+QM    +  D+     ++S C     
Sbjct: 327 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 465 VDEGREYF------------------------------ADMTIQHGIEPNEAHYGCMVDL 494
           +  GR+                                A+   +   E +   +  M+  
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 446

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
             + G++ +A E    M  K N I W A+LGA   H   E
Sbjct: 447 YSQVGNVAKAREFFDGMSEK-NVITWNAMLGAYIQHGAEE 485



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 121/534 (22%), Positives = 221/534 (41%), Gaps = 101/534 (18%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFL 121
           G +  A ++F ++P   V  WNT++ GY +   +   +  +L M +S D  P+ +T    
Sbjct: 85  GRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACA 144

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR----------- 170
           +K            +L   V KF       V  AL+  +  CG VD+A            
Sbjct: 145 MKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTM 204

Query: 171 --------------------GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
                                +FD   + DVV+WN M S   +  +  E   +  +M+ K
Sbjct: 205 FCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSK 264

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL--ILENALTDMYAACGEMG 268
           GV   S T    L+ACA+L  L  GK+ H  V   + +P++   + +AL ++YA  G   
Sbjct: 265 GVRLDSTTYTSSLTACARLSSLRWGKQLHAQV--IRNLPHIDPYVASALVELYAKSGCFK 322

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A  +F ++ +++ ++WT +++G++  G                                
Sbjct: 323 EAKGVFNSLHDRNNVAWTVLISGFLQYGC------------------------------- 351

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           F E++ LF +M+   +  D+F + ++++ C +   L LG  + +   K+     + V N+
Sbjct: 352 FTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS 411

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-- 446
           LI MY KC +++ A+ +FR M  KD  +WT+MI   +  G+  K+ + F  M   ++I  
Sbjct: 412 LISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITW 471

Query: 447 ------------------------------PDEVTYVGVLSACTHTGMVDEGREYFADMT 476
                                         PD VTYV +   C   G    G +     T
Sbjct: 472 NAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGR-T 530

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           ++ G+  + +    ++ +  + G + EA +V   + +K + + W A++     H
Sbjct: 531 VKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVK-DIVSWNAMITGYSQH 583



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/485 (23%), Positives = 196/485 (40%), Gaps = 87/485 (17%)

Query: 16  ETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
            T   S +  C  +  L   KQ+H+Q I+     +P V + LV    ++ G  K A  VF
Sbjct: 270 STTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELY-AKSGCFKEAKGVF 328

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             +   +   W  +I G+ +       V ++  M    +  D +    L+ G    + + 
Sbjct: 329 NSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLC 388

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G++LH   LK G   +V V N+LIS Y  C  +  A  IF    + D+V+W +M + Y 
Sbjct: 389 LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYS 448

Query: 193 RVKQFDETRKLFGEMERKGVL--------------------------------PTSVTIV 220
           +V    + R+ F  M  K V+                                P  VT V
Sbjct: 449 QVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYV 508

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            +   CA L    +G +      +  ++ +  + NA+  MY+ CG +  A ++F  +  K
Sbjct: 509 TLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVK 568

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           D++SW A++TGY   G    A + FD + +R                             
Sbjct: 569 DIVSWNAMITGYSQHGMGKQAIEIFDDILKR----------------------------- 599

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKC 396
               +PD  + V++L+ C++ G ++ G   K Y D  K  ++I  G    + ++D+  + 
Sbjct: 600 --GAKPDYISYVAVLSGCSHSGLVQEG---KFYFDMMKRAHNISPGLEHFSCMVDLLGRA 654

Query: 397 GDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD------------KSLDMFSQMLRA 443
           G + +A+ +  +M ++     W A++    I+G+ +             S D  S ML A
Sbjct: 655 GHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMA 714

Query: 444 SIIPD 448
            I  D
Sbjct: 715 KIYAD 719



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 166/400 (41%), Gaps = 50/400 (12%)

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF-GNIKNKD 281
           L +C     L   +  H  +    +   + L+N L   Y +CG +  A  +   +I + +
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 70

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           VI+   ++ GY   G++  A + F +MP RD   W  ++ GY +  ++  +L  F  M  
Sbjct: 71  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 130

Query: 342 S-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
           S +  P+ FT+   + +C  LG   L   +   + K   ++D  V  AL+DM+ +CG V+
Sbjct: 131 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 190

Query: 401 KAQR-------------------------------VFREMLRKDKFTWTAMIVGLAINGH 429
            A R                               +F  M  +D  +W  M+  L+ +G 
Sbjct: 191 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM--TIQHGIEPNEAH 487
             ++LDM   M    +  D  TY   L+AC     +  G++  A +   + H I+P  A 
Sbjct: 251 VREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPH-IDPYVA- 308

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH----RDAEMAEMAAKQI 543
              +V+L  ++G   EA  V  ++  + N++ W  L+     +       E+      ++
Sbjct: 309 -SALVELYAKSGCFKEAKGVFNSLHDR-NNVAWTVLISGFLQYGCFTESVELFNQMRAEL 366

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNF--RELRQMILDRG 581
           + LD      + L   I   C+R D    R+L  + L  G
Sbjct: 367 MTLDQ-----FALATLISGCCSRMDLCLGRQLHSLCLKSG 401


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/705 (36%), Positives = 391/705 (55%), Gaps = 39/705 (5%)

Query: 21   SPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKI 75
            S +  C S+  L   KQ HS  IK G+ ++  ++  L+     CS   D+K A + F   
Sbjct: 377  SLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCS---DIKTAHEFFLST 433

Query: 76   PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
               +V LWN M+  Y  +D+      I+  M    + P+ +T+P +L+  +   AV+ G+
Sbjct: 434  ETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGE 493

Query: 136  ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
            ++H  VLK GF  +V+V + LI  Y   G++D A  IF    + DVV+W AM +GY + +
Sbjct: 494  QIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHE 553

Query: 196  QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
            +F E   LF EM+ +G+   ++     +SACA ++ L+ G++ H          +L + N
Sbjct: 554  KFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGN 613

Query: 256  ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
            AL  +YA CG                               +V  A   FD++  +D + 
Sbjct: 614  ALVSLYARCG-------------------------------KVRDAYFAFDKIFSKDNIS 642

Query: 316  WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
            W ++I G+ +     EAL+LF +M  +    + FT    ++A AN+  ++LG+ +   I 
Sbjct: 643  WNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMII 702

Query: 376  KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
            K    ++  V N LI +Y KCG+++ A+R F EM  K++ +W AM+ G + +GHG K+L 
Sbjct: 703  KTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALS 762

Query: 436  MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
            +F  M +  ++P+ VT+VGVLSAC+H G+VDEG +YF  M   HG+ P   HY C+VDLL
Sbjct: 763  LFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLL 822

Query: 496  GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
            GR+G L+ A   ++ MP++P+++V   LL AC VH++ ++ E AA  +LEL+P + A YV
Sbjct: 823  GRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYV 882

Query: 556  LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
            LL N+YA   +W      RQM+ DRG+KK PG S IE+N  VH F AGD+ HP   +IY 
Sbjct: 883  LLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYE 942

Query: 616  KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
             L ++       GY+P  + +  D     K      HSEKLA+AFGL+S      I + K
Sbjct: 943  YLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFK 1002

Query: 676  NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            NLR+C DCH   K VS + DR ++VRD  RFHHFK G CSCKDYW
Sbjct: 1003 NLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  229 bits (583), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 164/588 (27%), Positives = 274/588 (46%), Gaps = 55/588 (9%)

Query: 17  TPLI--SPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKV 71
           TP I  S +  C  +   K   Q+H   +K G      V N LVT   S  G+   A +V
Sbjct: 270 TPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLY-SRLGNFIPAEQV 328

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           F  + +     +N++I G S+       + ++  M    ++PD  T   LL   +   A+
Sbjct: 329 FNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGAL 388

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             GK+ H + +K G  S + ++ AL+  Y  C ++  A   F  +  ++VV WN M   Y
Sbjct: 389 LVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAY 448

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
             +   +E+ K+F +M+ +G+ P   T   +L  C+ L+ +D+G++ H  V +     N+
Sbjct: 449 GLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNV 508

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + + L DMYA  G++  AL+IF  +K KDV+SWTA++ GY                   
Sbjct: 509 YVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQH---------------- 552

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
                           +F EAL LF+EMQ   I  D     S ++ACA + AL  G+ + 
Sbjct: 553 ---------------EKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIH 597

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
                +   +D+ VGNAL+ +Y +CG V  A   F ++  KD  +W ++I G A +GH +
Sbjct: 598 AQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCE 657

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L +FSQM +A    +  T+   +SA  +   V  G++  A M I+ G +        +
Sbjct: 658 EALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHA-MIIKTGHDSETEVSNVL 716

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD--PD 549
           + L  + G++++A      MP K N I W A+L     H     A    + + +L   P+
Sbjct: 717 ITLYAKCGNIDDAERQFFEMPEK-NEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPN 775

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
               +V    + +AC+           ++D GIK     SM E++G+V
Sbjct: 776 ----HVTFVGVLSACSHVG--------LVDEGIKYFQ--SMREVHGLV 809



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/498 (28%), Positives = 243/498 (48%), Gaps = 34/498 (6%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
            H +++IH++TI  G   +  V N L+     + G +  A KVF  + +     W  M+ 
Sbjct: 186 FHCVEKIHARTITHGYENSLFVCNPLIDLYF-KNGFLNSAKKVFDGLQKRDSVSWVAMLS 244

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
           G S+    +  VL++  M  S V P  Y F  +L   T+    + G++LH  VLK GF  
Sbjct: 245 GLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSL 304

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
             +V NAL++ Y   G    A  +F+   + D V++N++ SG  +    D+  +LF +M 
Sbjct: 305 ETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMC 364

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
              + P  VT+  +LSAC+ +  L VGK+ H Y  +  +  ++ILE AL D+Y  C ++ 
Sbjct: 365 LDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIK 424

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A E F + + ++V+                               LW  M+  Y  ++ 
Sbjct: 425 TAHEFFLSTETENVV-------------------------------LWNVMLVAYGLLDN 453

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             E+  +F +MQ   I P++FT  SIL  C++L A++LGE + T + K   + +++V + 
Sbjct: 454 LNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSV 513

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDMY K G ++ A ++FR +  KD  +WTAMI G A +    ++L++F +M    I  D
Sbjct: 514 LIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSD 573

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
            + +   +SAC     +++G++  A   +  G   + +    +V L  R G + +A    
Sbjct: 574 NIGFASAISACAGIQALNQGQQIHAQACVS-GYSDDLSVGNALVSLYARCGKVRDAYFAF 632

Query: 509 KNMPMKPNSIVWGALLGA 526
             +  K N I W +L+  
Sbjct: 633 DKIFSKDN-ISWNSLISG 649



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/527 (24%), Positives = 226/527 (42%), Gaps = 72/527 (13%)

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
            YS  +   NG+     M +  VR ++ T+ +LL G         G +LH  +LK GF +
Sbjct: 42  AYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCA 101

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
            V +   L+  Y   G++D A  +FD      +  WN +   +   K       LF  M 
Sbjct: 102 EVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRML 161

Query: 209 RKGVLPTSVTIVLVLSACAKLK-DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           ++ V P   T   VL  C          ++ H          +L + N L D+Y   G +
Sbjct: 162 QEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFL 221

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A ++F  ++ +D +SW A+++G    G  +                            
Sbjct: 222 NSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEE---------------------------- 253

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
              EA+ LF +M TS + P  +   S+L+AC  +   ++GE +   + K     + +V N
Sbjct: 254 ---EAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCN 310

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           AL+ +Y + G+   A++VF  ML++D+ ++ ++I GL+  G+ DK+L++F +M    + P
Sbjct: 311 ALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKP 370

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL------------- 494
           D VT   +LSAC+  G +  G++ F    I+ G+  +    G ++DL             
Sbjct: 371 DCVTVASLLSACSSVGALLVGKQ-FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEF 429

Query: 495 ------------------LGRAGHLNEALEVIKNMPM---KPNSIVWGALLGACRVHRDA 533
                              G   +LNE+ ++   M M   +PN   + ++L  C   R  
Sbjct: 430 FLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAV 489

Query: 534 EMAEMAAKQILELDPD-NEAVYVLLCNIYAACNRWDN----FRELRQ 575
           ++ E    Q+L+     N  V  +L ++YA   + D+    FR L++
Sbjct: 490 DLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKE 536



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 142/347 (40%), Gaps = 27/347 (7%)

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           +F +  E +    TA+   Y         +     M+   +R +  T + +L  C + G 
Sbjct: 28  FFQKFLEHN----TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGW 83

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
              G  +   I K     ++ +   L+D+Y   GD++ A  VF EM  +    W  ++  
Sbjct: 84  FSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHR 143

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
                   + L +F +ML+  + PDE TY GVL  C    +     E     TI HG E 
Sbjct: 144 FVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYEN 203

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
           +      ++DL  + G LN A +V   +  K +S+ W A+L         E A +   Q+
Sbjct: 204 SLFVCNPLIDLYFKNGFLNSAKKVFDGL-QKRDSVSWVAMLSGLSQSGCEEEAVLLFCQM 262

Query: 544 LELDPDNEAVY---VLLCNIYAACNRWDNFR---ELRQMILDRGIK-KTPGC-SMIEMNG 595
                    VY    +  ++ +AC + + ++   +L  ++L +G   +T  C +++ +  
Sbjct: 263 -----HTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYS 317

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMT-----SDLKFVGYMPDISEVF 637
            +  F+  +    Q     L+ DE++     S L   GY     E+F
Sbjct: 318 RLGNFIPAE----QVFNAMLQRDEVSYNSLISGLSQQGYSDKALELF 360


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/566 (41%), Positives = 356/566 (62%), Gaps = 11/566 (1%)

Query: 166 VDMARGIFDVSY-KDDVVTWNAMFSGYKR---VKQFDETRKLFGEMERKGVLPTSVTIVL 221
           +  A  IF + + K +   WN +           Q      ++  M    V P   T   
Sbjct: 7   ISYANPIFHIRHLKLESFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPF 66

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L +      L +G+R H  +    +  +  +  +L +MY++CG++  AL IF    +KD
Sbjct: 67  LLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKD 126

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           + +W ++V  Y   G ++ AR+ FD+MPER+ + W+ +I+GY+   +++EAL LFREMQ 
Sbjct: 127 LPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQL 186

Query: 342 SN-----IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
                  + P++FT+ ++L+AC  LGALE G+WV +YIDK  V+ DI +G ALIDMY KC
Sbjct: 187 PKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKC 246

Query: 397 GDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTYVG 454
           G +E+A+RVF  +  +KD   ++AMI  LA+ G  D+   +FS+M  ++ I P+ VT+VG
Sbjct: 247 GSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVG 306

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           +L AC H G++++G+ YF  MT + GI P+  HYGCMVDL GR+G + EA   I +MPM+
Sbjct: 307 ILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPME 366

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
           P+ ++WG+LL   R+  D +  E A K+++ELDP N   YVLL N+YA   RW   + +R
Sbjct: 367 PDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIR 426

Query: 575 QMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS 634
             +  +GIKK PGCS +E+ GVVHEFV GD+S  +++ IY  L+E+   L+  GY+ D  
Sbjct: 427 HEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVSDTK 486

Query: 635 EVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVY 694
           EV LD+ E+DKE A+  HSEKLA+AF L+ + PG  +RI+KNLR+C DCH + K++S ++
Sbjct: 487 EVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLF 546

Query: 695 DREVIVRDKTRFHHFKHGSCSCKDYW 720
            RE++VRD  RFHHF  GSCSC+D+W
Sbjct: 547 SREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 177/414 (42%), Gaps = 77/414 (18%)

Query: 60  SEKGDMKYACKVF--RKIPRPSVCLWNTMIKGYSRIDS---HKNGVLIYLDMLKSDVRPD 114
           S++  + YA  +F  R +   S  +WN +I+      S     + + +Y  M    V PD
Sbjct: 2   SKEAIISYANPIFHIRHLKLESF-VWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPD 60

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174
            +TFPFLL  F   I +  G+  H  +L FG D   FV+ +L++ Y  CG++  A  IFD
Sbjct: 61  FHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFD 120

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL--------------------- 213
            S   D+  WN++ + Y +    +  RKLF EM  + V+                     
Sbjct: 121 ESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDL 180

Query: 214 ---------------PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
                          P   T+  VLSAC +L  L+ GK  H Y+ +  +  +++L  AL 
Sbjct: 181 FREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALI 240

Query: 259 DMYAACGEMGFALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
           DMYA CG +  A  +F  +   KDV +++A++      G  D                  
Sbjct: 241 DMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTD------------------ 282

Query: 318 AMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGE-WVKTYID 375
                        E   +F EM TS NI P+  T V IL AC + G +  G+ + K   +
Sbjct: 283 -------------ECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTE 329

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
           +  +   I     ++D+Y + G +++A+     M +  D   W +++ G  + G
Sbjct: 330 EFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLG 383



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 156/344 (45%), Gaps = 23/344 (6%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           T L++   +C  +    +I  +++   L    +V N       ++ G + +A K+F ++P
Sbjct: 100 TSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAY-----AKAGLINHARKLFDEMP 154

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-----VRPDNYTFPFLLKGFTRDIAV 131
             +V  W+ +I GY     +K  + ++ +M         V P+ +T   +L    R  A+
Sbjct: 155 ERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGAL 214

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSG 190
           E GK +H ++ K+G +  + +  ALI  Y  CG ++ A+ +FD +  K DV  ++AM   
Sbjct: 215 EQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICC 274

Query: 191 YKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIV 248
                  DE  ++F EM     + P SVT V +L AC     ++ GK   + + +E  I 
Sbjct: 275 LAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGIT 334

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQ 307
           P++     + D+Y   G +  A     ++    DV+ W ++++G    G +        +
Sbjct: 335 PSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKR 394

Query: 308 MPERD------YVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           + E D      YVL + +   Y +  R+ E   +  EM+   I+
Sbjct: 395 LIELDPMNSGAYVLLSNV---YAKTGRWIEVKRIRHEMEVKGIK 435


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/655 (37%), Positives = 380/655 (58%), Gaps = 12/655 (1%)

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           +A ++F  +P   V  WN M+   S+    +  + + +DM    VR D+ T+   L    
Sbjct: 242 HALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACA 301

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           R  ++ +GK+LH  V++       +V +AL+  Y   G    A+G+F+  +  + V W  
Sbjct: 302 RLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTV 361

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + SG+ +   F E+ +LF +M  + +      +  ++S C    DL +G++ H    +  
Sbjct: 362 LISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSG 421

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
            +  +++ N+L  MYA C  +  A  IF  +  KD++SWT+++T Y   G V  AR++FD
Sbjct: 422 QIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD 481

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALE 365
            M E++ + W AM+  Y++     + L +++ M +   +RPD  T V++   CA+LGA +
Sbjct: 482 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 541

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
           LG+ +     K  +  D  V NA+I MY KCG + +A++VF  +  KD  +W AMI G +
Sbjct: 542 LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 601

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            +G G +++++F  +L+    PD ++YV VLS C+H+G+V EG+ YF  M   H I P  
Sbjct: 602 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGL 661

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            H+ CMVDLLGRAGHL EA ++I +MPMKP + VWGALL AC++H + E+AE+AAK + E
Sbjct: 662 EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 721

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           LD  +   Y+L+  IYA   + D+  ++R+++ D+GIKK PG S +E++  VH F A D 
Sbjct: 722 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDV 781

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           SHPQ   I  KLDE+   +  +GY+             D  R+   HSEKLA+AFGL++ 
Sbjct: 782 SHPQVLAIRKKLDELMEKIARLGYV-----------RTDSTRSEIHHSEKLAVAFGLMTL 830

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              + I I+KNLR+C DCH + KL+S V  RE ++RD  RFHHF  GSCSC DYW
Sbjct: 831 PTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 198/460 (43%), Gaps = 64/460 (13%)

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF--DVSYKD---------------- 179
           H  ++  G  S+VF+QN L+  Y  CG +  AR +   D+++ +                
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 180 --------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLS 224
                         DV +WN + SGY + +Q+  + + F  M R G   P + T+   + 
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 166

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           +C  L    +  +    V++     +  +  AL DM+  CG +  A  +F  IK   +  
Sbjct: 167 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 226

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
             +++ GY+    VD A + FD MPERD V W  M+    +  R REAL +  +MQ+  +
Sbjct: 227 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 286

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           R D  T  S LTACA L +L  G+ +   + +N    D +V +AL+++Y K G  ++A+ 
Sbjct: 287 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 346

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           VF  +  ++   WT +I G    G   +S+++F+QM    +  D+     ++S C     
Sbjct: 347 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 406

Query: 465 VDEGREYF------------------------------ADMTIQHGIEPNEAHYGCMVDL 494
           +  GR+                                A+   +   E +   +  M+  
Sbjct: 407 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 466

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
             + G++ +A E    M  K N I W A+LGA   H   E
Sbjct: 467 YSQVGNVAKAREFFDGMSEK-NVITWNAMLGAYIQHGAEE 505



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 121/534 (22%), Positives = 221/534 (41%), Gaps = 101/534 (18%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFL 121
           G +  A ++F ++P   V  WNT++ GY +   +   +  +L M +S D  P+ +T    
Sbjct: 105 GRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACA 164

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR----------- 170
           +K            +L   V KF       V  AL+  +  CG VD+A            
Sbjct: 165 MKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTM 224

Query: 171 --------------------GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
                                +FD   + DVV+WN M S   +  +  E   +  +M+ K
Sbjct: 225 FCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSK 284

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL--ILENALTDMYAACGEMG 268
           GV   S T    L+ACA+L  L  GK+ H  V   + +P++   + +AL ++YA  G   
Sbjct: 285 GVRLDSTTYTSSLTACARLSSLRWGKQLHAQV--IRNLPHIDPYVASALVELYAKSGCFK 342

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A  +F ++ +++ ++WT +++G++  G                                
Sbjct: 343 EAKGVFNSLHDRNNVAWTVLISGFLQYGC------------------------------- 371

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           F E++ LF +M+   +  D+F + ++++ C +   L LG  + +   K+     + V N+
Sbjct: 372 FTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS 431

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-- 446
           LI MY KC +++ A+ +FR M  KD  +WT+MI   +  G+  K+ + F  M   ++I  
Sbjct: 432 LISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITW 491

Query: 447 ------------------------------PDEVTYVGVLSACTHTGMVDEGREYFADMT 476
                                         PD VTYV +   C   G    G +     T
Sbjct: 492 NAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGR-T 550

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           ++ G+  + +    ++ +  + G + EA +V   + +K + + W A++     H
Sbjct: 551 VKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVK-DIVSWNAMITGYSQH 603



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/485 (23%), Positives = 196/485 (40%), Gaps = 87/485 (17%)

Query: 16  ETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
            T   S +  C  +  L   KQ+H+Q I+     +P V + LV    ++ G  K A  VF
Sbjct: 290 STTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELY-AKSGCFKEAKGVF 348

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             +   +   W  +I G+ +       V ++  M    +  D +    L+ G    + + 
Sbjct: 349 NSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLC 408

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G++LH   LK G   +V V N+LIS Y  C  +  A  IF    + D+V+W +M + Y 
Sbjct: 409 LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYS 468

Query: 193 RVKQFDETRKLFGEMERKGVL--------------------------------PTSVTIV 220
           +V    + R+ F  M  K V+                                P  VT V
Sbjct: 469 QVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYV 528

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            +   CA L    +G +      +  ++ +  + NA+  MY+ CG +  A ++F  +  K
Sbjct: 529 TLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVK 588

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           D++SW A++TGY   G    A + FD + +R                             
Sbjct: 589 DIVSWNAMITGYSQHGMGKQAIEIFDDILKR----------------------------- 619

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKC 396
               +PD  + V++L+ C++ G ++ G   K Y D  K  ++I  G    + ++D+  + 
Sbjct: 620 --GAKPDYISYVAVLSGCSHSGLVQEG---KFYFDMMKRAHNISPGLEHFSCMVDLLGRA 674

Query: 397 GDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD------------KSLDMFSQMLRA 443
           G + +A+ +  +M ++     W A++    I+G+ +             S D  S ML A
Sbjct: 675 GHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMA 734

Query: 444 SIIPD 448
            I  D
Sbjct: 735 KIYAD 739



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 166/400 (41%), Gaps = 50/400 (12%)

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF-GNIKNKD 281
           L +C     L   +  H  +    +   + L+N L   Y +CG +  A  +   +I + +
Sbjct: 31  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 90

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           VI+   ++ GY   G++  A + F +MP RD   W  ++ GY +  ++  +L  F  M  
Sbjct: 91  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 150

Query: 342 S-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
           S +  P+ FT+   + +C  LG   L   +   + K   ++D  V  AL+DM+ +CG V+
Sbjct: 151 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 210

Query: 401 KAQR-------------------------------VFREMLRKDKFTWTAMIVGLAINGH 429
            A R                               +F  M  +D  +W  M+  L+ +G 
Sbjct: 211 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 270

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM--TIQHGIEPNEAH 487
             ++LDM   M    +  D  TY   L+AC     +  G++  A +   + H I+P  A 
Sbjct: 271 VREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPH-IDPYVA- 328

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH----RDAEMAEMAAKQI 543
              +V+L  ++G   EA  V  ++  + N++ W  L+     +       E+      ++
Sbjct: 329 -SALVELYAKSGCFKEAKGVFNSLHDR-NNVAWTVLISGFLQYGCFTESVELFNQMRAEL 386

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNF--RELRQMILDRG 581
           + LD      + L   I   C+R D    R+L  + L  G
Sbjct: 387 MTLDQ-----FALATLISGCCSRMDLCLGRQLHSLCLKSG 421


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 258/696 (37%), Positives = 387/696 (55%), Gaps = 45/696 (6%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           Q+H+  ++LGLL      +  +       G +  A +VF ++P   V  WN M+ G  R 
Sbjct: 87  QLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRN 146

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE-----LHCHVLKFGFDS 148
               + V +   M+   V  D  T   +L      + V  G       +H + +K G   
Sbjct: 147 TRAADAVTLLGRMVGEGVAGDAVTLSSVLP-----MCVVLGDRALALVMHVYAVKHGLSG 201

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
            +FV NALI  Y   G +  A  +F      D+VTWN++ S  ++  +     +LF  M 
Sbjct: 202 ELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMM 261

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI-VPNLILENALTDMYAACGEM 267
             GV P  +T+V + SA A+  D    K  H YV+     V ++I  NA+ DMYA     
Sbjct: 262 ESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYA----- 316

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
                                        ++D A++ FD +P+RD V W  +I GY++  
Sbjct: 317 --------------------------KMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNG 350

Query: 328 RFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
              EA+ ++ +M     ++P + T VS+L A + LG L+ G  +     K  +  D++V 
Sbjct: 351 LANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVT 410

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
             LID+Y KCG + +A  +F  M R+    W A+I GL ++GHG K+L +FSQM +  I 
Sbjct: 411 TCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIK 470

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD VT+V +L+AC+H G+VD+GR +F  M   +GI P   HY CMVD+LGRAG L+EA E
Sbjct: 471 PDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFE 530

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
            I++MP+KP+S VWGALLGACR+H + EM ++A++ + ELDP+N   YVL+ N+YA   +
Sbjct: 531 FIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGK 590

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS--HPQTKEIYLKLDEMTSDL 624
           WD    +R ++  + ++KTPG S +E+ G V  F +G ++  HPQ +EI   L ++ + +
Sbjct: 591 WDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKM 650

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           K  GY+PD S V  DV E++KE+ +  HSE+LA+AFG+I++ PG  + I KNLR+C DCH
Sbjct: 651 KSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCH 710

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              K +S + +RE+IVRD  RFHHFK G CSC D+W
Sbjct: 711 SATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 140/329 (42%), Gaps = 13/329 (3%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P  LT  + L S +  C      K +H    + G      +    +    ++   +  A 
Sbjct: 267 PDVLTLVS-LASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQ 325

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRD 128
           KVF  +P   V  WNT+I GY +       + IY DM   + ++P   TF  +L  ++  
Sbjct: 326 KVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYL 385

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
             ++ G  +H   +K G +  V+V   LI  Y  CG++  A  +F+   +     WNA+ 
Sbjct: 386 GGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAII 445

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KI 247
           +G        +   LF +M+++ + P  VT V +L+AC+    +D G+     ++    I
Sbjct: 446 AGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGI 505

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFD 306
           VP       + DM    G++  A E   ++  K D   W A++      G V+M +    
Sbjct: 506 VPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQ 565

Query: 307 QMPERD------YVLWTAMIDGYLRVNRF 329
            + E D      YVL + M   Y ++ ++
Sbjct: 566 NLFELDPENVGYYVLMSNM---YAKIGKW 591


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/621 (38%), Positives = 358/621 (57%), Gaps = 4/621 (0%)

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
           L  L +   P   ++  + +  T    ++ G ++H H+L  G   +  V + +++ Y   
Sbjct: 59  LQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASS 118

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G++D +  +F+   +   + +N+M   Y R    + T   +  M   G      T   VL
Sbjct: 119 GDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVL 178

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            +  +L  + +GK  H  +    +  +L +  +L  +Y  CGE+  A ++F N+  +DV 
Sbjct: 179 KSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVS 238

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QT 341
           SW A++ GY   G +D A   F++MP R+ V WT MI GY +    ++AL+LF EM  + 
Sbjct: 239 SWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKED 298

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
           S +RP+  TI+S+L ACA L  LE G  +     +  + ++  V  AL  MY KCG +  
Sbjct: 299 SGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVD 358

Query: 402 AQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           A+  F ++ R +K    W  MI   A  GHG +++  F +M++A I PD++T+ G+LS C
Sbjct: 359 ARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGC 418

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H+G+VD G +YF  M+  + I P   HY C+ DLLGRAG L EA +++  MPM     +
Sbjct: 419 SHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSI 478

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           WG+LL ACR HR+ EMAE AA+++  L+P+N   YVLL N+YA   RW    +LR ++  
Sbjct: 479 WGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKS 538

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
           +G KK+PGCS IE+NG  H F+ GD SHPQ KEIY+ L+ +   +K  GY PD S V  D
Sbjct: 539 QGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHD 598

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           + EE+KE  +  HSEKLA+AFG++++     +R+ KNLR+C DCH     +S +Y REVI
Sbjct: 599 ISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVI 658

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           VRD  RFHHFK G CSC DYW
Sbjct: 659 VRDINRFHHFKGGCCSCGDYW 679



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 192/445 (43%), Gaps = 77/445 (17%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           S+  PP  L+   P+   +     +    Q+H+  +  GL     V +K+V F  S  GD
Sbjct: 63  SAPGPPPILSY-APVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASS-GD 120

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           +  +  VF  I  PS  L+N+MI+ Y+R    +  V  Y  M       D +TFPF+LK 
Sbjct: 121 IDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKS 180

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
               ++V  GK +H  +L+ G    ++V  +LI  Y  CGE++ A  +FD     DV +W
Sbjct: 181 SVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSW 240

Query: 185 NAMFSGYKRVKQFD-------------------------------ETRKLFGEM--ERKG 211
           NA+ +GY +    D                               +   LF EM  E  G
Sbjct: 241 NALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSG 300

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V P  VTI+ VL ACA+L  L+ G++ H       +  N  +  ALT MYA CG +  A 
Sbjct: 301 VRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDAR 360

Query: 272 EIFG--NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
             F   N   K++I+W  ++T Y + G                                 
Sbjct: 361 NCFDKLNRNEKNLIAWNTMITAYASYGHG------------------------------- 389

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-----EWVKTYIDKNKVKNDIF 384
            +A++ FREM  + I+PD+ T   +L+ C++ G +++G         TY    +V++   
Sbjct: 390 LQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYAC 449

Query: 385 VGNALIDMYCKCGDVEKAQRVFREM 409
           V     D+  + G + +A ++  EM
Sbjct: 450 VA----DLLGRAGRLAEASKLVGEM 470


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/468 (47%), Positives = 315/468 (67%)

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +++    MYAA G++G     F  I + DV+  TA++      G VD AR+ FD MP+RD
Sbjct: 161 VQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRD 220

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
           +V W AM+ GY+RV R REAL LF EMQ + +   E T+VS+LTACA +GALE G WV +
Sbjct: 221 HVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHS 280

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           Y+    ++  + +G AL+DMY KCG V  +  VF  M  ++ +TWT+ + GLA+NG G++
Sbjct: 281 YVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEE 340

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
            L++F +M  A + P+ VT+V VL  C+  G+V+EGR  F  M  +H +EP   HYGCMV
Sbjct: 341 CLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMV 400

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRAG L++A++ I +MP++P+  VWGALL A R+H + ++ + A  ++ E++  N+A
Sbjct: 401 DLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDA 460

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            +VLL NIYA  + W    ++R M+  +G+KK PGCS IE++G VHEF  G KSHP+ K+
Sbjct: 461 AHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKD 520

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I   L EM+  L+  GY  +  EV  D+ EE+KE A+  HSEKLA+AFGLI+      IR
Sbjct: 521 IQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPEDTVIR 580

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IVKNLR+C DCH   KL+S V+DRE+++RD+ RFHHFKHG+CSC+DYW
Sbjct: 581 IVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 198/454 (43%), Gaps = 84/454 (18%)

Query: 25  TCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL-W 83
           + +S  +L++IH+  +  G L +P+     V    S    + YA  +  +  RP+  L  
Sbjct: 26  SSQSQFRLREIHAHLLVSGRLASPSHHADFVASLASSS-HLSYARLLLPQ--RPATLLAH 82

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG------------FTRDIAV 131
           N +++  +R        L +    +  + PD+Y+F FL++                D+AV
Sbjct: 83  NGLLRALARGPCPG---LAFAAFRELPLAPDHYSFTFLVRAATSLAAAASATPVPTDVAV 139

Query: 132 EF-GKELHCHVLKFGFDSSVFVQNALISTYC--------------------LC------- 163
                 +H    + G  +   VQ+  +S Y                     +C       
Sbjct: 140 NLLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGA 199

Query: 164 ----GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
               G+VD AR +FD   + D V WNAM +GY RV +  E   LF EM++ GV  + VT+
Sbjct: 200 LSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTL 259

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
           V VL+ACA++  L+ G   H YV    +  ++ L  AL DMY+ CG +  ++E+F  ++ 
Sbjct: 260 VSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRE 319

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           +++ +WT+ ++G    G  +                               E L LF+ M
Sbjct: 320 RNIYTWTSALSGLAMNGMGE-------------------------------ECLELFKRM 348

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEW-VKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           +++ + P+  T V++L  C+  G +E G     +  DK+KV+  +     ++D+Y + G 
Sbjct: 349 ESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGR 408

Query: 399 VEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
           ++ A      M +   +  W A++    I+ + D
Sbjct: 409 LDDAVDFINSMPVEPHEGVWGALLNASRIHNNVD 442



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 115/253 (45%), Gaps = 2/253 (0%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           S  GD+  A ++F  +P+     WN M+ GY R+   +  + ++ +M K+ V     T  
Sbjct: 201 SAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLV 260

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L    +  A+E G  +H +V   G   SV +  AL+  Y  CG V M+  +F+   + 
Sbjct: 261 SVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRER 320

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           ++ TW +  SG       +E  +LF  ME  G+ P  VT V VL  C+    ++ G+   
Sbjct: 321 NIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACF 380

Query: 240 RYVKE-CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQ 297
             +K+  K+ P L     + D+Y   G +  A++   ++  +     W A++        
Sbjct: 381 DSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNN 440

Query: 298 VDMARQYFDQMPE 310
           VD+ +    ++ E
Sbjct: 441 VDLGKHAMHKLTE 453



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 33/175 (18%)

Query: 381 NDIFVGNALIDMYCKC-------------------------------GDVEKAQRVFREM 409
            D  V +  + MY                                  GDV+ A+ +F  M
Sbjct: 157 TDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGM 216

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
            ++D   W AM+ G    G   ++L +F +M +A +   EVT V VL+AC   G ++ G 
Sbjct: 217 PQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGM 276

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
            +        G+  +      +VD+  + G +  ++EV + M  + N   W + L
Sbjct: 277 -WVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRER-NIYTWTSAL 329


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 372/614 (60%), Gaps = 1/614 (0%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           ++ C SM +LK +H+Q I  GL        KL++ C  E GD++YA  +F +IP+P+  +
Sbjct: 46  LDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQE-GDLRYAHLLFDQIPQPNKFM 104

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           +N +I+GYS  +     +L++  M+ +   P+ +TFPF+LK             +H   +
Sbjct: 105 YNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAI 164

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K G      VQNA+++ Y  C  +  AR +FD      +V+WN+M +GY ++   DE   
Sbjct: 165 KLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAIL 224

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           LF EM + GV     T+V +LSA +K  +LD+G+  H Y+    +  + I+ NAL DMYA
Sbjct: 225 LFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYA 284

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG + FA  +F  + +KDV+SWT++V  Y N+G V+ A Q F+ MP ++ V W ++I  
Sbjct: 285 KCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICC 344

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
            ++  ++ EA+ LF  M  S + PD+ T+VSIL+ C+N G L LG+    YI  N +   
Sbjct: 345 LVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVS 404

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           + + N+LIDMY KCG ++ A  +F  M  K+  +W  +I  LA++G G+++++MF  M  
Sbjct: 405 VTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQA 464

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
           + + PDE+T+ G+LSAC+H+G+VD GR YF  M     I P   HY CMVDLLGR G L 
Sbjct: 465 SGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLG 524

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           EA+ +I+ MP+KP+ +VWGALLGACR++ + E+A+   KQ+LEL   N  +YVLL N+Y+
Sbjct: 525 EAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYS 584

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
              RWD+ +++R+++ D GIKK    S IE++G  ++F+  DK H  +  IY  LD++  
Sbjct: 585 ESQRWDDMKKIRKIMDDSGIKKCRAISFIEIDGCCYQFMVDDKRHCASTGIYSILDQLMD 644

Query: 623 DLKFVGYMPDISEV 636
            LK VGY    SEV
Sbjct: 645 HLKSVGYPCKSSEV 658


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 272/750 (36%), Positives = 395/750 (52%), Gaps = 88/750 (11%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           IS +   +S H L ++       G ++N  V N LV    S  G +  A KVF ++P   
Sbjct: 140 ISSVRCGDSSHALSRV------TGFMSNVFVGNALVAMY-SRCGSLSDARKVFDEMPVWD 192

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           V  WN++I+ Y+++   K  + ++  M      RPD+ T   +L           GK+ H
Sbjct: 193 VVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFH 252

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
              +      ++FV N L+  Y   G +D A  +F      DVV+WNAM +GY ++ +F+
Sbjct: 253 GFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFE 312

Query: 199 ETRKLFGEMERK-----------------------------------GVLPTSVTIVLVL 223
           +  +LF +M+ +                                   G+ P  VT++ VL
Sbjct: 313 DAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVL 372

Query: 224 SACAKLKDLDVGKRAHRYV--------KECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           S CA +  L  GK  H Y         K      N+++ N L DMYA C           
Sbjct: 373 SGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVI-NQLIDMYAKCK---------- 421

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP--ERDYVLWTAMIDGYLRVNRFREAL 333
                                +VD+AR  FD +   ERD V WT MI GY +     +AL
Sbjct: 422 ---------------------KVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKAL 460

Query: 334 TLFREM--QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN-DIFVGNALI 390
            L  EM  +    RP+ FTI   L ACA+L AL +G+ +  Y  +N+     +FV N LI
Sbjct: 461 ELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLI 520

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMY KCGD+  A+ VF  M+ K++ TWT+++ G  ++G+G+++L +F +M R     D V
Sbjct: 521 DMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGV 580

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T + VL AC+H+GM+D+G EYF  M    G+ P   HY C+VDLLGRAG LN AL +I+ 
Sbjct: 581 TLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEE 640

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MPM+P  +VW ALL  CR+H   E+ E AAK+I EL  +N+  Y LL N+YA   RW + 
Sbjct: 641 MPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDV 700

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
             +R ++  +GIKK PGCS +E       F  GDK+HP  KEIY  L +    +K +GY+
Sbjct: 701 TRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYV 760

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           P+      DV +E+K+  +++HSEKLA+A+G++++  G  IRI KNLR+C DCH     +
Sbjct: 761 PETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYM 820

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S + D E+I+RD +RFHHFK+G CSCK YW
Sbjct: 821 SRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 177/558 (31%), Positives = 282/558 (50%), Gaps = 38/558 (6%)

Query: 1   MFSNSS--ISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC 58
           +FS S+  I+PP            I  C+++ Q+K IH + +  G+LT     + + T+ 
Sbjct: 22  LFSTSALEITPPF-----------IHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYI 70

Query: 59  CSEKGDMKYACKVFRKIPRPS---VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN 115
               G + +A  + R+ P PS   V  WN++I+ Y         +  +  M      PDN
Sbjct: 71  --SLGCLSHAVSLLRRFP-PSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDN 127

Query: 116 YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV 175
           YTFPF+ K      +V  G   H      GF S+VFV NAL++ Y  CG +  AR +FD 
Sbjct: 128 YTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDE 187

Query: 176 SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDV 234
               DVV+WN++   Y ++ +     ++F +M  + G  P  +T+V VL  CA +    +
Sbjct: 188 MPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSL 247

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           GK+ H +    +++ N+ + N L DMYA  G M  A  +F N+  KDV+SW A+V GY  
Sbjct: 248 GKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQ 307

Query: 295 RGQVDMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
            G+ + A + F+QM E     D V W+A I GY +     EAL + R+M +S I+P+E T
Sbjct: 308 IGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVT 367

Query: 351 IVSILTACANLGALELGEWVKTY-------IDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           ++S+L+ CA++GAL  G+ +  Y       + KN   ++  V N LIDMY KC  V+ A+
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIAR 427

Query: 404 RVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLR--ASIIPDEVTYVGVLSAC 459
            +F  +  K++   TWT MI G + +G  +K+L++ S+M        P+  T    L AC
Sbjct: 428 AMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVAC 487

Query: 460 THTGMVDEGREYFA-DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
                +  G++  A  +  Q    P      C++D+  + G + +A  V  NM M+ N +
Sbjct: 488 ASLAALSIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGDIGDARLVFDNM-MEKNEV 545

Query: 519 VWGALLGACRVHRDAEMA 536
            W +L+    +H   E A
Sbjct: 546 TWTSLMTGYGMHGYGEEA 563



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 155/361 (42%), Gaps = 24/361 (6%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKL-------GLLTNPTVQNK 53
           +S I P      E  LIS +  C S+  L   K+IH   IK        G      V N+
Sbjct: 358 SSGIKP-----NEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQ 412

Query: 54  LV-TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-- 110
           L+  +   +K D+  A           V  W  MI GYS+       + +  +M + D  
Sbjct: 413 LIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472

Query: 111 VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS-SVFVQNALISTYCLCGEVDMA 169
            RP+ +T    L       A+  GK++H + L+   ++  +FV N LI  Y  CG++  A
Sbjct: 473 TRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDA 532

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229
           R +FD   + + VTW ++ +GY      +E   +F EM R G     VT+++VL AC+  
Sbjct: 533 RLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHS 592

Query: 230 KDLDVG-KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTA 287
             +D G +  +R   +  + P       L D+    G +  AL +   +      + W A
Sbjct: 593 GMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVA 652

Query: 288 IVTGYINRGQVDM---ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           +++     G+V++   A +   ++   +   +T + + Y    R+++   +   M+   I
Sbjct: 653 LLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGI 712

Query: 345 R 345
           +
Sbjct: 713 K 713


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/720 (35%), Positives = 397/720 (55%), Gaps = 61/720 (8%)

Query: 29  MHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT 85
           MH L   KQ+H  ++++G     T  N  +    ++ G +  +  +F       +  WNT
Sbjct: 210 MHGLRLGKQLHGYSLRVG--DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNT 267

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           MI  +S+ D     +  +  M+   V  D  T   +L   +    ++ GKE+H +VL+  
Sbjct: 268 MISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN 327

Query: 146 -FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
               + FV +AL+  YC C +V+  R +FD      +  WNAM SGY R    ++   LF
Sbjct: 328 DLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILF 387

Query: 205 GEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
            EM +  G+LP + T+  V+ AC   +     +  H Y  +     +  ++NAL DMY+ 
Sbjct: 388 IEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSR 447

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
            G+M                               D++   FD M  RD V W  MI GY
Sbjct: 448 MGKM-------------------------------DISETIFDSMEVRDRVSWNTMITGY 476

Query: 324 LRVNRFREALTLFREMQT-----------------SNIRPDEFTIVSILTACANLGALEL 366
           +   R+  AL L  EMQ                     +P+  T++++L  CA L A+  
Sbjct: 477 VLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAK 536

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+ +  Y  +N + +DI VG+AL+DMY KCG +  ++RVF EM  K+  TW  +I+   +
Sbjct: 537 GKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGM 596

Query: 427 NGHGDKSLDMFSQMLRAS-----IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
           +G G+++L++F  M+  +       P+EVT++ V +AC+H+G++ EG   F  M   HG+
Sbjct: 597 HGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGV 656

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLGACRVHRDAEMAEMAA 540
           EP   HY C+VDLLGRAG L EA E++  MP + + +  W +LLGACR+H++ E+ E+AA
Sbjct: 657 EPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAA 716

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
           K +L L+P+  + YVLL NIY++   W+   E+R+ +   G+KK PGCS IE    VH+F
Sbjct: 717 KNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKF 776

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
           +AGD SHPQ+++++  L+ ++  ++  GY+PD S V  +V E++KE  +  HSEKLA+AF
Sbjct: 777 MAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAF 836

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G++++ PG TIR+ KNLR+C DCH   K +S + +RE+IVRD  RFHHFK G+CSC DYW
Sbjct: 837 GILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 160/585 (27%), Positives = 259/585 (44%), Gaps = 69/585 (11%)

Query: 33  KQIHSQTIKLGLLTNP-TVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
           +QIH+  +K G  ++  TV N LV     C   GD+   CKVF +I       WN+ I  
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDV---CKVFDRITDRDQVSWNSFIAA 168

Query: 90  YSRIDSHKNGVLIYLDMLKSDVRPDNYTF---PFLLKGFTRDIAVEFGKELHCHVLKFGF 146
             R +  +  +  +  M   ++   ++T                +  GK+LH + L+ G 
Sbjct: 169 LCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG- 227

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
           D   F  NAL++ Y   G VD ++ +F+     D+V+WN M S + +  +F E    F  
Sbjct: 228 DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRL 287

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACG 265
           M  +GV    VTI  VL AC+ L+ LDVGK  H YV +   ++ N  + +AL DMY  C 
Sbjct: 288 MVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCR 347

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
           ++     +F +I  + +  W A+++GY        AR   D+                  
Sbjct: 348 QVESGRRVFDHILGRRIELWNAMISGY--------ARNGLDE------------------ 381

Query: 326 VNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
                +AL LF EM + + + P+  T+ S++ AC +  A    E +  Y  K   K D +
Sbjct: 382 -----KALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRY 436

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR-- 442
           V NAL+DMY + G ++ ++ +F  M  +D+ +W  MI G  ++G    +L +  +M R  
Sbjct: 437 VQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRME 496

Query: 443 ---------------ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
                              P+ +T + VL  C     + +G+E  A   I++ +  +   
Sbjct: 497 NTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHA-YAIRNMLASDITV 555

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILEL 546
              +VD+  + G LN +  V   MP K N I W  L+ AC +H   E A E+    + E 
Sbjct: 556 GSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHGKGEEALELFKNMVAEA 614

Query: 547 DPDNEAV--YVLLCNIYAACNRWDNFRE----LRQMILDRGIKKT 585
               EA    V    ++AAC+      E      +M  D G++ T
Sbjct: 615 GRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPT 659



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 225/458 (49%), Gaps = 46/458 (10%)

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P  S   W   ++  +R +  +  +  Y++M  S  RPDN+ FP +LK  +    ++ G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 136 ELHCHVLKFGF-DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           ++H   +KFG+  SSV V N L++ Y  CG +     +FD     D V+WN+  +   R 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL---KDLDVGKRAHRY---VKECKIV 248
           +++++  + F  M+ + +  +S T+V V  AC+ L     L +GK+ H Y   V + K  
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTF 232

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            N    NAL  MYA  G +  +  +F +  ++D++SW                       
Sbjct: 233 TN----NALMAMYAKLGRVDDSKALFESFVDRDMVSW----------------------- 265

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                     MI  + + +RF EAL  FR M    +  D  TI S+L AC++L  L++G+
Sbjct: 266 --------NTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 317

Query: 369 WVKTYIDKNK-VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
            +  Y+ +N  +  + FVG+AL+DMYC C  VE  +RVF  +L +    W AMI G A N
Sbjct: 318 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 377

Query: 428 GHGDKSLDMFSQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           G  +K+L +F +M++ A ++P+  T   V+ AC H       +E      ++ G + +  
Sbjct: 378 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSN-KESIHGYAVKLGFKEDRY 436

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
               ++D+  R G ++ +  +  +M ++ + + W  ++
Sbjct: 437 VQNALMDMYSRMGKMDISETIFDSMEVR-DRVSWNTMI 473



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 132/305 (43%), Gaps = 27/305 (8%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+T T  + + + +  CE+    + IH   +KLG   +  VQN L+    S  G M  + 
Sbjct: 398 PNTTTMASVMPACVH-CEAFSNKESIHGYAVKLGFKEDRYVQNALMDM-YSRMGKMDISE 455

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-----------------VR 112
            +F  +       WNTMI GY     + N +++  +M + +                  +
Sbjct: 456 TIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYK 515

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           P+  T   +L G     A+  GKE+H + ++    S + V +AL+  Y  CG ++++R +
Sbjct: 516 PNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRV 575

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF----GEMERKG-VLPTSVTIVLVLSACA 227
           F+     +V+TWN +        + +E  +LF     E  R G   P  VT + V +AC+
Sbjct: 576 FNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACS 635

Query: 228 KLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK--DVIS 284
               +  G    +R   +  + P       + D+    G++  A E+   +  +   V +
Sbjct: 636 HSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGA 695

Query: 285 WTAIV 289
           W++++
Sbjct: 696 WSSLL 700


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/692 (37%), Positives = 385/692 (55%), Gaps = 42/692 (6%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVT--FCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           + +H  ++  G   +  V + L    F  S   D +   KVF  +P P   LWNT++ G 
Sbjct: 134 RTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDAR---KVFDTVPSPDTILWNTLLAGL 190

Query: 91  SRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
              ++ +     ++ M+ +  VRPD+ T    L+       +  G+ +H + +K G    
Sbjct: 191 PGSEALE----AFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEH 246

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
             V   L+S Y  CG++D A+ +FD     D+V +NA+ SGY      + + +LF E+  
Sbjct: 247 EHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTA 306

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
            G  P S T+V V+   +      + +  H +V + ++  + ++  ALT +Y    +M  
Sbjct: 307 SGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDM-- 364

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
                                        + AR  FD M E+    W AMI GY +    
Sbjct: 365 -----------------------------ESARSIFDAMLEKTMESWNAMISGYAQNGLT 395

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
             A+ LF+ MQ  N++P+  TI S L+ACA+LGAL LG+WV   I K K++ +++V  AL
Sbjct: 396 EMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTAL 455

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           IDMY KCG + +A+ +F  M  K+  +W AMI G  ++G G ++L ++  ML A I+P  
Sbjct: 456 IDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTS 515

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
            T++ V+ AC+H G+VDEG++ F  MT ++ I P   H  CMVDLLGRAG LNEALE+I 
Sbjct: 516 STFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELIS 575

Query: 510 NMPMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
             P       VWGALLGAC VH+++++A++A++++ ELD +N   YVLL N+Y +   + 
Sbjct: 576 EFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYS 635

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
               +RQ    R + KTPGC++IE+    H F+AGD  HPQ++ IY  L+ +T+ +   G
Sbjct: 636 EAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAG 695

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           Y P       DV EE+KE  V  HSEKLA+AFGL+S+ PG  IRI+KNLR+C+DCH   K
Sbjct: 696 YQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATK 755

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +S V  R ++VRD +RFHHF+ G CSC DYW
Sbjct: 756 FISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 158/345 (45%), Gaps = 20/345 (5%)

Query: 11  STLTQETPLISPIETCESMHQL--KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           STL    P+ SP       H+L  + +H+  +K  L  +  V   L T  C    DM+ A
Sbjct: 314 STLVAVIPVYSPFG-----HELLARCLHAFVVKARLDADALVSTALTTLYC-RLNDMESA 367

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
             +F  +   ++  WN MI GY++    +  V ++  M + +V+P+  T    L      
Sbjct: 368 RSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHL 427

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            A+  GK +H  + K   + +V+V  ALI  Y  CG +  AR IFD     +VV+WNAM 
Sbjct: 428 GALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMI 487

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKI 247
           SGY    Q  E  KL+ +M    +LPTS T + V+ AC+    +D G++  R +  E +I
Sbjct: 488 SGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRI 547

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS--WTAIVTGYINRGQVDMARQYF 305
            P +     + D+    G++  ALE+        +    W A++   +     D+A+   
Sbjct: 548 TPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLAS 607

Query: 306 DQMPERD------YVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
            ++ E D      YVL + +   Y     + EA  + +E +T  +
Sbjct: 608 QKLFELDSENAGYYVLLSNL---YTSKKHYSEAAVVRQEAKTRKL 649


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/746 (35%), Positives = 402/746 (53%), Gaps = 85/746 (11%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF-----RKIPRPSVCL 82
           S+     +H+     GL +N  + N +V       G +  A ++F     RKI    +  
Sbjct: 142 SLRHGASVHAIVCANGLGSNVFICNSIVAMY-GRCGALDDAHQMFDEVLERKIE--DIVS 198

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDM---LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           WN+++  Y +    +  + I   M       +RPD  T   +L       A++ GK++H 
Sbjct: 199 WNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHG 258

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
             ++ G    VFV NAL+S Y  C +++ A  +F+   K DVV+WNAM +GY ++  FD 
Sbjct: 259 FSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDS 318

Query: 200 TRKLFGEMERK-----------------------------------GVLPTSVTIVLVLS 224
              LF  M+ +                                   G+ P  VT+  +LS
Sbjct: 319 ALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLS 378

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPN-------LILENALTDMYAACGEMGFALEIFGNI 277
            CA +  L  GK+ H YV +  +  N       L++ N L DMYA C     A  IF +I
Sbjct: 379 GCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSI 438

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
           + KD                             ++ V WT MI GY +     +AL LF 
Sbjct: 439 EGKD-----------------------------KNVVTWTVMIGGYAQHGEANDALKLFA 469

Query: 338 EM--QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI-FVGNALIDMYC 394
           ++  Q ++++P+ FT+   L ACA LG L LG  +  Y  +N+ ++++ +VGN LIDMY 
Sbjct: 470 QIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYS 529

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
           K GD++ A+ VF  M  ++  +WT+++ G  ++G G+++L +F QM +     D +T++ 
Sbjct: 530 KSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLV 589

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           VL AC+H+GMVD+G  YF DM    GI P   HY CMVDLLGRAG LNEA+E+IKNM M+
Sbjct: 590 VLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSME 649

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
           P ++VW ALL A R+H + E+ E AA ++ EL  +N+  Y LL N+YA   RW +   +R
Sbjct: 650 PTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIR 709

Query: 575 QMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS 634
            ++   GI+K PGCS I+       F  GD+SHP++++IY  L ++   +K +GY+P  S
Sbjct: 710 SLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTS 769

Query: 635 EVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVY 694
               DV +E+K   +++HSEKLA+A+G++++ PG  IRI KNLR+C DCH     +SM+ 
Sbjct: 770 FALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMII 829

Query: 695 DREVIVRDKTRFHHFKHGSCSCKDYW 720
           D E+++RD +RFHHFK GSCSC+ YW
Sbjct: 830 DHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 178/569 (31%), Positives = 285/569 (50%), Gaps = 35/569 (6%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           +S  + SPP+      PLIS +  C+++   K  H Q    G     T           E
Sbjct: 21  YSTFTTSPPTI-----PLISLLRQCKTLINAKLAHQQIFVHGF----TEMFSYAVGAYIE 71

Query: 62  KGDMKYACKVFRK-IPRPS-VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
            G    A  + ++ IP  S V  WN +I+   ++    + +  Y  M +    PD+YTFP
Sbjct: 72  CGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFP 131

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK- 178
           F+LK      ++  G  +H  V   G  S+VF+ N++++ Y  CG +D A  +FD   + 
Sbjct: 132 FVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLER 191

Query: 179 --DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL---PTSVTIVLVLSACAKLKDLD 233
             +D+V+WN++ + Y +  Q     ++   M     L   P ++T+V +L ACA +  L 
Sbjct: 192 KIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQ 251

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
            GK+ H +     +V ++ + NAL  MYA C +M  A ++F  IK KDV+SW A+VTGY 
Sbjct: 252 HGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYS 311

Query: 294 NRGQVDMARQYFDQMPERDYVL----WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
             G  D A   F  M E D  L    W+A+I GY +     EAL +FR+MQ   + P+  
Sbjct: 312 QIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVV 371

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKV-------KNDIFVGNALIDMYCKCGDVEKA 402
           T+ S+L+ CA++GAL  G+    Y+ KN +       ++D+ V N LIDMY KC     A
Sbjct: 372 TLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVA 431

Query: 403 QRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQML--RASIIPDEVTYVGVLSA 458
           + +F  +  KDK   TWT MI G A +G  + +L +F+Q+   + S+ P+  T    L A
Sbjct: 432 RSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMA 491

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYG-CMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           C   G +  GR+  A   +++  E    + G C++D+  ++G ++ A  V  NM ++ N 
Sbjct: 492 CARLGELRLGRQLHA-YALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NV 549

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQILEL 546
           + W +L+    +H   E A     Q+ +L
Sbjct: 550 VSWTSLMTGYGMHGRGEEALHLFDQMQKL 578



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 155/350 (44%), Gaps = 27/350 (7%)

Query: 19  LISPIETCESMHQL---KQIHSQTIK--LGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           L S +  C S+  L   KQ H+  IK  L L  N    + LV    +   DM   CK +R
Sbjct: 373 LASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVL---NGLIDMYAKCKSYR 429

Query: 74  KIPRP----------SVCLWNTMIKGYSRIDSHKNGVLIYLDMLK--SDVRPDNYTFPFL 121
            + R           +V  W  MI GY++     + + ++  + K  + ++P+ +T    
Sbjct: 430 -VARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCA 488

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSV-FVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           L    R   +  G++LH + L+   +S V +V N LI  Y   G++D AR +FD     +
Sbjct: 489 LMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRN 548

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK-RAH 239
           VV+W ++ +GY    + +E   LF +M++ G     +T ++VL AC+    +D G    H
Sbjct: 549 VVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFH 608

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQV 298
             VK   I P       + D+    G +  A+E+  N+      + W A+++       +
Sbjct: 609 DMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANI 668

Query: 299 DMARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           ++      ++ E    +   +T + + Y    R+++   +   M+ + IR
Sbjct: 669 ELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIR 718


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/655 (37%), Positives = 379/655 (57%), Gaps = 12/655 (1%)

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           +A ++F  +P   V  WN M+   S+    +  + + +DM    VR D+ T+   L    
Sbjct: 222 HALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACA 281

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           R  ++ +GK+LH  V++       +V +AL+  Y  CG    A+G+F+  +  + V W  
Sbjct: 282 RLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTV 341

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + +G+ +   F E+ +LF +M  + +      +  ++S C    DL +G++ H    +  
Sbjct: 342 LIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSG 401

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
            +  +++ N+L  MYA C  +  A  IF  +  KD++SWT+++T +   G +  AR++FD
Sbjct: 402 QIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFD 461

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALE 365
            M  ++ + W AM+  Y++     + L ++  M +  ++RPD  T V++   CA+LGA +
Sbjct: 462 GMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANK 521

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
           LG+ +     K  +  D  V NA+I MY KCG + +A++VF  +  KD  +W AMI G +
Sbjct: 522 LGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 581

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            +G G +++++F  +L+    PD ++YV VLS C+H+G+V EG+ YF  M   H I P  
Sbjct: 582 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGL 641

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            H+ CMVDLLGRAGHL EA ++I  MPMKP + VWGALL AC++H + E+AE+AAK + E
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 701

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           LD  +   Y+L+  IYA   + D+  ++R+++ D+GIKK PG S +E+N  VH F A D 
Sbjct: 702 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDV 761

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           SHPQ   I  KLDE+   +  +GY+             D  R+   HSEKLA+AFGL+S 
Sbjct: 762 SHPQVIAIRKKLDELMEKIARLGYV-----------RTDSPRSEIHHSEKLAVAFGLMSL 810

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              + I I+KNLR+C DCH + KL+S V  RE ++RD  RFHHF  GSCSC DYW
Sbjct: 811 PAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 211/490 (43%), Gaps = 65/490 (13%)

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF--DVSYKD---------------- 179
           H  ++  G  S+VF+QN L+  Y  CG +  AR +   D+++ +                
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 180 --------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLS 224
                         DV +WN + SGY + +Q+  + + F  M R G   P + T    + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           +C  L +  +  +    V++     +  +  AL DM+  CG +  A  +F  IK   +  
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
             +++ GY+    VD A + FD MPERD V W  M+    +  R REAL +  +MQ+  +
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           R D  T  S LTACA L +L  G+ +   + +N    D +V +AL+++Y KCG  ++A+ 
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG 326

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           VF  +  ++   WT +I G   +G   +S+++F+QM    +  D+     ++S C     
Sbjct: 327 VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 465 VDEGREYF------------------------------ADMTIQHGIEPNEAHYGCMVDL 494
           +  GR+                                A+   +   E +   +  M+  
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITA 446

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
             + G++ +A E    M  K N I W A+LGA  +   AE   +    ++  + D    +
Sbjct: 447 HSQVGNIAKAREFFDGMSTK-NVITWNAMLGA-YIQHGAEEDGLRMYNVMLSEKDVRPDW 504

Query: 555 VLLCNIYAAC 564
           V    ++  C
Sbjct: 505 VTYVTLFKGC 514



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/532 (22%), Positives = 220/532 (41%), Gaps = 97/532 (18%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFL 121
           G +  A ++F ++P   V  WNT++ GY +   +   +  ++ M +S D  P+ +TF + 
Sbjct: 85  GRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYA 144

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR----------- 170
           +K            +L   V KFG      V  AL+  +  CG VD+A            
Sbjct: 145 MKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTI 204

Query: 171 --------------------GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
                                +FD   + DVV+WN M S   +  +  E   +  +M+ K
Sbjct: 205 FCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSK 264

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           GV   S T    L+ACA+L  L  GK+ H  V       +  + +AL ++YA CG    A
Sbjct: 265 GVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEA 324

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
             +F ++ +++ ++WT ++ G++  G                                F 
Sbjct: 325 KGVFNSLHDRNNVAWTVLIAGFLQHGC-------------------------------FT 353

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           E++ LF +M+   +  D+F + ++++ C +   L LG  + +   K+     + V N+LI
Sbjct: 354 ESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLI 413

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII---- 446
            MY KC +++ A+ +FR M  KD  +WT+MI   +  G+  K+ + F  M   ++I    
Sbjct: 414 SMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNA 473

Query: 447 ----------------------------PDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
                                       PD VTYV +   C   G    G +     T++
Sbjct: 474 MLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGR-TVK 532

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            G+  + +    ++ +  + G + EA +V   + +K + + W A++     H
Sbjct: 533 VGLILDTSVANAVITMYSKCGRILEARKVFDFLNVK-DIVSWNAMITGYSQH 583



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 112/485 (23%), Positives = 197/485 (40%), Gaps = 87/485 (17%)

Query: 16  ETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
            T   S +  C  +  L   KQ+H+Q I+     +P V + LV    ++ G  K A  VF
Sbjct: 270 STTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELY-AKCGCFKEAKGVF 328

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             +   +   W  +I G+ +       V ++  M    +  D +    L+ G    + + 
Sbjct: 329 NSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLC 388

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G++LH   LK G   +V V N+LIS Y  C  +  A  IF    + D+V+W +M + + 
Sbjct: 389 LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHS 448

Query: 193 RVKQFDETRKLFGEMERKGVL--------------------------------PTSVTIV 220
           +V    + R+ F  M  K V+                                P  VT V
Sbjct: 449 QVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYV 508

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            +   CA L    +G +      +  ++ +  + NA+  MY+ CG +  A ++F  +  K
Sbjct: 509 TLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVK 568

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           D++SW A++TGY   G    A + FD + +R                             
Sbjct: 569 DIVSWNAMITGYSQHGMGKQAIEIFDDILKR----------------------------- 599

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKC 396
               +PD  + V++L+ C++ G ++ G   K+Y D  K  ++I  G    + ++D+  + 
Sbjct: 600 --GAKPDYISYVAVLSGCSHSGLVQEG---KSYFDMMKRVHNISPGLEHFSCMVDLLGRA 654

Query: 397 GDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD------------KSLDMFSQMLRA 443
           G + +A+ +  EM ++     W A++    I+G+ +             S D  S ML A
Sbjct: 655 GHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMA 714

Query: 444 SIIPD 448
            I  D
Sbjct: 715 KIYAD 719



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 163/399 (40%), Gaps = 48/399 (12%)

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF-GNIKNKD 281
           L +C     L   +  H  +    +   + L+N L   Y +CG +  A  +   +I + +
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPN 70

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           VI+   ++ GY+  G++  A + F +MP RD   W  ++ GY +  ++  +L  F  M  
Sbjct: 71  VITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHR 130

Query: 342 S-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
           S +  P+ FT    + +C  LG   L   +   + K   ++D  V  AL+DM+ +CG V+
Sbjct: 131 SGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVD 190

Query: 401 KAQR-------------------------------VFREMLRKDKFTWTAMIVGLAINGH 429
            A R                               +F  M  +D  +W  M+  L+ +G 
Sbjct: 191 LASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG-IEPNEAHY 488
             ++LDM   M    +  D  TY   L+AC     +  G++  A +      I+P  A  
Sbjct: 251 VREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVA-- 308

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH----RDAEMAEMAAKQIL 544
             +V+L  + G   EA  V  ++  + N++ W  L+     H       E+      +++
Sbjct: 309 SALVELYAKCGCFKEAKGVFNSLHDR-NNVAWTVLIAGFLQHGCFTESVELFNQMRAELM 367

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNF--RELRQMILDRG 581
            LD      + L   I   C+R D    R+L  + L  G
Sbjct: 368 TLDQ-----FALATLISGCCSRMDLCLGRQLHSLCLKSG 401


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/589 (38%), Positives = 358/589 (60%), Gaps = 3/589 (0%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY-KDDVVTWNAMFSGYKR 193
           K++H  +LK G     +     +S          A  +F   + + D   WN M  G   
Sbjct: 28  KQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGLSC 87

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
             Q D +  L+  M        + T   +L AC+ L       + H ++ +     ++  
Sbjct: 88  SDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYA 147

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            N+L + YA  G    A  +F  I+  D +SW +++ GY+  G++DMA   F +MPE++ 
Sbjct: 148 VNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNN 207

Query: 314 VL-WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            + WT MI GY++    +EAL LF EMQ SN+ PD  ++ S L+AC+ LGALE G+W+ +
Sbjct: 208 AISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHS 267

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           Y +K + + D  +   LIDMY KCG++E+A  VF+ M  K    WTA+I G A +G G +
Sbjct: 268 YANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGRE 327

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           ++  F +M    + P+ +T+  VL+AC++TG+V+EG+  F  +   + ++P   HYGCMV
Sbjct: 328 AISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMV 387

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGRAG LNEA   I+ MP+KPN+++WG+LL AC++H++ E+ E   + ++E+D ++  
Sbjct: 388 DLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHGG 447

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YV + NI+A   +WD   E R+++ ++G+ K PGCS I + G  HEF+AGD+SH + +E
Sbjct: 448 RYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAEIQE 507

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLD-VGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           I  K   +   L+  GY+P++ ++ LD V +E+KE  V+QHSEKLA+ +GL+ + PG TI
Sbjct: 508 IRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTKPGTTI 567

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI+KNLR+C DCH++  L+S +Y R++++RD+TRFHHFK G CSC DYW
Sbjct: 568 RIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 210/443 (47%), Gaps = 67/443 (15%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF-RKIPRP 78
           +S ++ C +  +LKQIH++ +K GLL +P    K ++FC        YA  VF     RP
Sbjct: 15  LSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFC-LSSSFSSYAHDVFFNGFDRP 73

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
              LWN MI+G S  D     +L+Y  ML      + YTFPFLLK  +   A +   ++H
Sbjct: 74  DTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIH 133

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
            H+ KFG+   ++  N+LI++Y + G    A  +FD   + D V+WN++  GY +  + D
Sbjct: 134 AHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMD 193

Query: 199 --------------------------------ETRKLFGEMERKGVLPTSVTIVLVLSAC 226
                                           E  +LF EM+   V P +V++   LSAC
Sbjct: 194 MALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSAC 253

Query: 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWT 286
           ++L  L+ GK  H Y  + +   + +L   L DMYA CGEM  AL +F N+K K V  WT
Sbjct: 254 SQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWT 313

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
           A+++GY   G                                 REA++ F EMQ   ++P
Sbjct: 314 ALISGYAYHG-------------------------------LGREAISKFLEMQNMGVKP 342

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           +  T  ++LTAC+  G +E G+ V   I+++  +K  I     ++D+  + G + +A R 
Sbjct: 343 NAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRF 402

Query: 406 FREM-LRKDKFTWTAMIVGLAIN 427
            ++M L+ +   W +++    I+
Sbjct: 403 IQKMPLKPNAVIWGSLLKACQIH 425


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/705 (35%), Positives = 401/705 (56%), Gaps = 38/705 (5%)

Query: 20  ISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           +  ++ C  + QL   +++H+  +K G   N      LV +  ++ G +  A +VFR+I 
Sbjct: 270 VGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMY--TKCGRVDSALRVFREID 327

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
                 WN+M+  Y +   +   +    +ML+   +PD+     L         +  GKE
Sbjct: 328 EKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKE 387

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H + +K   DS   V N L+  Y  C  ++ +  +FD     D ++W  + + Y +  +
Sbjct: 388 VHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSR 447

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
             E  ++F E +++G+    + I  +L AC+ L+ + + K+ H Y     ++ +L+++N 
Sbjct: 448 HIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLL-DLVVKNR 506

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           + D+Y  CGE+  +L++F  ++ K                               D V W
Sbjct: 507 IIDIYGECGEVYHSLKMFETVEQK-------------------------------DIVTW 535

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           T+MI+ Y       EAL LF EMQ+++++PD   +VSIL A   L +L  G+ V  ++ +
Sbjct: 536 TSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIR 595

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
                +  + ++L+DMY  CG +  A +VF  +  KD   WTAMI    ++GHG +++D+
Sbjct: 596 RNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDL 655

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F +ML+  + PD V+++ +L AC+H+ +V+EG+ Y   M   + +EP + HY C+VDLLG
Sbjct: 656 FKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLG 715

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R+G   EA E IK+MP+KP S+VW +LLGACRVH++ E+A +AA ++LEL+PDN   YVL
Sbjct: 716 RSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVL 775

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           + N++A   +W+N +E+R  I +RG++K P CS IE+   VH F   D SH   + I LK
Sbjct: 776 VSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLK 835

Query: 617 LDEMTSDL-KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
           L E+T  L K  GY  D   V  DV EE+K   +++HSE+LA++FGLI++ PG+ +RI K
Sbjct: 836 LAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAK 895

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH   KLVS ++DR+++VRD  RFHHF  GSCSC D+W
Sbjct: 896 NLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 161/606 (26%), Positives = 263/606 (43%), Gaps = 89/606 (14%)

Query: 13  LTQETPLISP-----------IETCESMHQLKQIHSQTIKLGLLT--NPTVQNKLVTFCC 59
           LT +TP  SP           +   +++ Q  Q+H+  +  G L   +  +  KL+ F  
Sbjct: 47  LTSQTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLL-FMY 105

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM---LKSDVRPDNY 116
            + G +  A  +F  +   +V  WN +I  Y    S    + +Y  M     S V PD  
Sbjct: 106 GKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGC 165

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           T   +LK    +     G E+H   +K G D S FV NALI+ Y  CG +D A  +F++ 
Sbjct: 166 TLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELM 225

Query: 177 YKD-DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
           +   DV +WN+M SG  +   F +   LF  M+R  +   S T V VL  C +L  L++G
Sbjct: 226 HDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLG 285

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           +  H  + +     N I  NAL  MY  CG +  AL +F  I  KD ISW ++++ Y+  
Sbjct: 286 RELHAALLKSGSEVN-IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQN 344

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G                                + EA+    EM     +PD   IVS+ 
Sbjct: 345 GL-------------------------------YAEAIEFISEMLRGGFQPDHACIVSLS 373

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
           +A  +LG L  G+ V  Y  K ++ +D  VGN L+DMY KC  +E +  VF  M  KD  
Sbjct: 374 SAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHI 433

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT--------------- 460
           +WT +I   A +    ++L++F +  +  I  D +    +L AC+               
Sbjct: 434 SWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYA 493

Query: 461 -HTGMVD------------EGREYFADMTIQHGIEPNE-AHYGCMVDLLGRAGHLNEALE 506
              G++D            E  E +  + +   +E  +   +  M++    +G LNEAL 
Sbjct: 494 IRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALV 553

Query: 507 VIKNMP---MKPNSI----VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
           +   M    ++P+S+    + GA+ G   + +  E+     ++   ++   EA+   L +
Sbjct: 554 LFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHME---EAIVSSLVD 610

Query: 560 IYAACN 565
           +Y+ C 
Sbjct: 611 MYSGCG 616



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 202/473 (42%), Gaps = 48/473 (10%)

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF--DSSVFVQNALISTYCLCGEVDMAR 170
           P    + ++L       AV  G ++H H +  G       F+   L+  Y  CG V  AR
Sbjct: 56  PPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADAR 115

Query: 171 GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME---RKGVLPTSVTIVLVLSACA 227
            +FD      V +WNA+   Y       E   ++  M      GV P   T+  VL A  
Sbjct: 116 LLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASG 175

Query: 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
              D   G   H    +  +  +  + NAL  MYA CG +  A+ +F  + +        
Sbjct: 176 VEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDG------- 228

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
                                  RD   W +MI G L+   F +AL LFR MQ + +  +
Sbjct: 229 -----------------------RDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMN 265

Query: 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407
            +T V +L  C  L  L LG  +   + K+  + +I   NAL+ MY KCG V+ A RVFR
Sbjct: 266 SYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC-NALLVMYTKCGRVDSALRVFR 324

Query: 408 EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
           E+  KD  +W +M+     NG   ++++  S+MLR    PD    V + SA  H G +  
Sbjct: 325 EIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLN 384

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA- 526
           G+E  A   I+  ++ +      ++D+  +  ++  +  V   M +K + I W  ++   
Sbjct: 385 GKEVHA-YAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIK-DHISWTTIITCY 442

Query: 527 CRVHRDAEMAEM---AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
            +  R  E  E+   A K+ +++DP      +++ +I  AC+  +     +Q+
Sbjct: 443 AQSSRHIEALEIFREAQKEGIKVDP------MMIGSILEACSGLETILLAKQL 489


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/599 (38%), Positives = 363/599 (60%), Gaps = 4/599 (0%)

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM---ARGIFDVSYKDDVV 182
           TR    E  K++H  +LK G     +     +S        D    A+ +FD   + D  
Sbjct: 51  TRCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTF 110

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
            WN M  G+    + + +  L+  M        + T   +L AC+ L  L+   + H  +
Sbjct: 111 LWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQI 170

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +     ++   N+L + YAA G    A  +F  I   D +SW +++ GY   G++D+A 
Sbjct: 171 TKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIAL 230

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
             F +M E++ + WT MI GY++    +EAL LF EMQ S++ PD  ++ + L+ACA LG
Sbjct: 231 TLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLG 290

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
           ALE G+W+ +Y+ K +++ D  +G  LIDMY KCGD+ +A  VF+ + RK    WTA+I 
Sbjct: 291 ALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALIS 350

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A +GHG +++  F +M +  I P+ +T+  VL+AC++TG+V+EG+  F +M   + ++
Sbjct: 351 GYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLK 410

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   HYGC+VDLL RAG L+EA   I+ MP+KPN+++WGALL ACR+H++ E+ E   + 
Sbjct: 411 PTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEI 470

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           ++ +DP +   YV   NI+A   +WD   E R+++ ++G+ K PGCS I + G  HEF+A
Sbjct: 471 LIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLA 530

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPD-ISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
           GD+SHP+ ++I  K   M   L+  GY+P+    +   V ++++E  V+QHSEKLA+ +G
Sbjct: 531 GDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYG 590

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LI + PG TIRI+KNLR+C DCH++ KL+S +Y R++++RD+TRFHHF+ G CSC DYW
Sbjct: 591 LIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 132/437 (30%), Positives = 214/437 (48%), Gaps = 66/437 (15%)

Query: 26  CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD--MKYACKVFRKIPRPSVCLW 83
           C    +LKQIH++ +K GL+ +     K ++ C S      + YA  VF    RP   LW
Sbjct: 53  CSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLW 112

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           N MI+G+S  D  +  +L+Y  ML      + YTFP LLK  +   A+E   ++H  + K
Sbjct: 113 NLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITK 172

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD----- 198
            G+++ V+  N+LI++Y   G   +A  +FD   K D V+WN++  GY +  + D     
Sbjct: 173 LGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTL 232

Query: 199 --------------------------ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
                                     E  +LF EM+   V P +V++   LSACA+L  L
Sbjct: 233 FRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGAL 292

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
           + GK  H Y+ + +I  + +L   L DMYA CG+MG ALE+F NI+ K V +WTA+++GY
Sbjct: 293 EQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGY 352

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G                                 REA++ F EMQ   I+P+  T  
Sbjct: 353 AYHGH-------------------------------GREAISKFMEMQKMGIKPNVITFT 381

Query: 353 SILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-L 410
           ++LTAC+  G +E G+ +   ++++  +K  I     ++D+  + G +++A+R  +EM L
Sbjct: 382 TVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPL 441

Query: 411 RKDKFTWTAMIVGLAIN 427
           + +   W A++    I+
Sbjct: 442 KPNAVIWGALLKACRIH 458



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 139/347 (40%), Gaps = 63/347 (18%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           S P        L+       ++ +  QIH+Q  KLG   +    N L+    +  G+ K 
Sbjct: 139 SAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLIN-SYAATGNFKL 197

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDS-------------------------------H 96
           A  +F +IP+P    WN++IKGY++                                  H
Sbjct: 198 AHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMH 257

Query: 97  KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
           K  + ++ +M  SDV PDN +    L    +  A+E GK +H ++ K        +   L
Sbjct: 258 KEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVL 317

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           I  Y  CG++  A  +F    +  V  W A+ SGY       E    F EM++ G+ P  
Sbjct: 318 IDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNV 377

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
           +T   VL+AC+    ++ GK              LI  N   D       +   +E +G 
Sbjct: 378 ITFTTVLTACSYTGLVEEGK--------------LIFYNMERDY-----NLKPTIEHYGC 418

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER-DYVLWTAMIDG 322
           +   D++S           G +D A+++  +MP + + V+W A++  
Sbjct: 419 V--VDLLS---------RAGLLDEAKRFIQEMPLKPNAVIWGALLKA 454


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/704 (35%), Positives = 398/704 (56%), Gaps = 32/704 (4%)

Query: 17   TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
            +  ++  ET + + + K+IH   ++  + ++  V   L+    ++ G+ + A ++F  + 
Sbjct: 334  SAFLAAAETID-LEKGKEIHGCALQQRIDSDILVATPLMVMY-AKCGETEKAKQLFWGLQ 391

Query: 77   RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
               +  W+ +I    +    +  + ++ +M    ++P+  T   +L        ++ GK 
Sbjct: 392  GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS 451

Query: 137  LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
            +HC  +K   DS +    AL+S Y  CG    A   F+     D+VTWN++ +GY ++  
Sbjct: 452  IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511

Query: 197  FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
                  +F ++    + P + T+V V+ ACA L DLD G   H  + +     +  ++NA
Sbjct: 512  PYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNA 571

Query: 257  LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
            L DMYA CG +  A  +F    NK   +                          +D V W
Sbjct: 572  LIDMYAKCGSLPSAEFLF----NKTDFT--------------------------KDEVTW 601

Query: 317  TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
              +I  Y++    +EA++ F +M+  N  P+  T VS+L A A L A   G      I +
Sbjct: 602  NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661

Query: 377  NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
                ++  VGN+LIDMY KCG ++ ++++F EM  KD  +W AM+ G A++GHGD+++ +
Sbjct: 662  MGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIAL 721

Query: 437  FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
            FS M  + +  D V++V VLSAC H G+V+EGR+ F  M+ ++ I+P+  HY CMVDLLG
Sbjct: 722  FSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLG 781

Query: 497  RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
            RAG  +E L  IK MP++P++ VWGALLG+CR+H + ++ E+A   +++L+P N A +V+
Sbjct: 782  RAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVV 841

Query: 557  LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
            L +IYA   RW +  + R  + D G+KKTPGCS +E+   VH F  GDKSHPQ + ++L 
Sbjct: 842  LSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLL 901

Query: 617  LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
             + +   ++ +GY+PD S V  +V EEDKE  +Y HSE+LA+ F L+++ PG TI+IVKN
Sbjct: 902  WNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKN 961

Query: 677  LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            LR+C DCH   K +S +  R +IVRD TRFHHF+ G CSC DYW
Sbjct: 962  LRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/516 (27%), Positives = 249/516 (48%), Gaps = 37/516 (7%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           ST T        + +C+ ++ L QIH+Q I  G   + ++ + +  +    K D+  A  
Sbjct: 27  STYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDL--ARS 84

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF   P PS  LWN+MI+ Y+R   +   + +Y  M++  + PD YTF F+LK  T  + 
Sbjct: 85  VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALN 144

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           ++ G   H  + + G +  VF+   L+  Y   G++  AR +FD   K DVV WNAM +G
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 204

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
             + +   E    F  M+  GV P+SV+++ +     KL ++++ +  H YV       +
Sbjct: 205 LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF--S 262

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
             + N L D+Y+ CG+                               VD+AR+ FDQM +
Sbjct: 263 SAVSNGLIDLYSKCGD-------------------------------VDVARRVFDQMVD 291

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           +D V W  M+ GY     F E L LF +M+  N+R ++ + VS   A A    LE G+ +
Sbjct: 292 QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEI 351

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
                + ++ +DI V   L+ MY KCG+ EKA+++F  +  +D   W+A+I  L   G+ 
Sbjct: 352 HGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYP 411

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           +++L +F +M    + P+ VT + +L AC    ++  G+      T++  ++ + +    
Sbjct: 412 EEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC-FTVKADMDSDLSTGTA 470

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           +V +  + G    AL     M  + + + W +L+  
Sbjct: 471 LVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLING 505


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 241/598 (40%), Positives = 368/598 (61%), Gaps = 12/598 (2%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCG--EVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H H +K G          L+    L    E+  AR  F   +  +  +WN +     
Sbjct: 32  KQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALA 91

Query: 193 RVKQFD-------ETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
                D       E    F  M   G++ P   T   VL ACAKL  ++ GK+ H +V +
Sbjct: 92  DSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVK 151

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQ 303
             +V +  + + L  +Y  CG M  A  +F   +   +V+ W  ++ GY+  G +  +R+
Sbjct: 152 LGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRE 211

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
            FD MP +  V W  MI G  +   F+EA+ +F +MQ  ++ P+  T+VS+L A + LGA
Sbjct: 212 LFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGA 271

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIV 422
           +ELG+WV  + +KN+++ D  +G+ALIDMY KCG ++KA +VF  +  +K+  TW+A+I 
Sbjct: 272 IELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIG 331

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           GLA++G    +LD F +M +A + P +V Y+GVLSAC+H G+V+EGR  +  M    G+ 
Sbjct: 332 GLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLL 391

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   HYGCMVDLLGRAG L EA ++I NMP+KP+ ++  ALLGAC++H + EM E  AK 
Sbjct: 392 PRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKI 451

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           ++   P +   YV L N++A+   W+   ++R  + +  I+K PGCS IE++GV+HEF+ 
Sbjct: 452 LMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLV 511

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
            D SHP+ + I+  L+EM+  L+ VGY P+ ++V L++ E++K+ A++ HSEK+A+AFGL
Sbjct: 512 EDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGL 571

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IS+ P   ++IVKNLR+C DCH   KLVS +Y+R++IVRD+ RFHHF++GSCSC DYW
Sbjct: 572 ISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDYW 629



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 216/454 (47%), Gaps = 75/454 (16%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPR 77
           L   I  C++   LKQIH+  IK G + +P    +L+ F   S + ++KYA K F +I  
Sbjct: 18  LFPQISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHH 77

Query: 78  PSVCLWNTMIKGYSRIDS----HKNGV--LIYLDMLKSD--VRPDNYTFPFLLKGFTRDI 129
           P+   WNT+I+  +  D     H N +  L+Y   + +D  V P+ +TFP +LK   +  
Sbjct: 78  PNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLA 137

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC-------------------------- 163
            +E GK+LH  V+K G  S  FV++ L+  Y +C                          
Sbjct: 138 RIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMI 197

Query: 164 ------GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
                 G++  +R +FD      VV+WN M SG  +   F E  ++F +M+   V P  V
Sbjct: 198 DGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYV 257

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T+V VL A ++L  +++GK  H + ++ +I  + +L +AL DMY+ CG +  A+++F  I
Sbjct: 258 TLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGI 317

Query: 278 KN-KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           +N K+ I+W+AI+ G    G                               R R+AL  F
Sbjct: 318 RNKKNPITWSAIIGGLAMHG-------------------------------RARDALDHF 346

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY-IDKNKVKNDIFVGNALIDMYCK 395
             MQ + + P +   + +L+AC++ G +E G  +  + ++   +   I     ++D+  +
Sbjct: 347 WRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGR 406

Query: 396 CGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
            G +E+A+++   M ++ D     A++    ++G
Sbjct: 407 AGCLEEAEQLILNMPVKPDDVILKALLGACKMHG 440


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/643 (38%), Positives = 371/643 (57%), Gaps = 41/643 (6%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WNT ++  ++       + +Y  ML+   RP+ +TFPF LK          G + H  + 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT--WNAMFSGYKRVKQFDET 200
           K G     FVQ  LIS YC    VD AR +F+ ++    +T  +NA+ SGY    +  E 
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             LF +M  +GV   SVT++ ++ AC    +L++G   H                     
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLH--------------------- 175

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
              C  + +  +        DV      +T Y+  G V+ A++ FD+MP +  + W AM+
Sbjct: 176 ---CSTLKYGFD-------SDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMV 225

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            GY +       L L+R M  + + PD  T+V +L++CANLGA  +G  V+  I  +   
Sbjct: 226 SGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFT 285

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
           ++ F+ NALI+MY +CG++ KAQ VF  M  +   +WTA+I G  ++GHG+ ++ +F +M
Sbjct: 286 SNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM 345

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           +R+ I PD   +V VLSAC+H G+ D+G EYF  M   + +EP   HY CMVDLLGRAG 
Sbjct: 346 IRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGR 405

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L EA  +I++MP+KP+  VWGALLGAC++H++ E+AE+A ++++EL+P+N   YVLL NI
Sbjct: 406 LKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNI 465

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           Y+  N       +R M+ ++ +KK PGCS +E+ G VH F+ GD++H Q+ EIY  L+E+
Sbjct: 466 YSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL 525

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERA---VYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
            + +     M +  +   D  EE  +     V  HSEKLA+AFGL+++  G  + I+KNL
Sbjct: 526 EAII-----MQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNL 580

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+C DCH   K+VS +  R++ VRD TRFHHF++GSCSCKDYW
Sbjct: 581 RICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 203/430 (47%), Gaps = 42/430 (9%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM-KYACKVFRK---IPRPSVCLWNTMIKG 89
           Q H Q  K+G +  P VQ  L++  C  KG +   A KVF +     + +VC +N ++ G
Sbjct: 70  QFHGQITKVGCVFEPFVQTGLISMYC--KGSLVDNARKVFEENFHSRKLTVC-YNALVSG 126

Query: 90  YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
           Y         VL++  M +  V  ++ T   L+      I +E G  LHC  LK+GFDS 
Sbjct: 127 YVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSD 186

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           V V N  I+ Y  CG V+ A+ +FD      +++WNAM SGY +        +L+  M+ 
Sbjct: 187 VSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDM 246

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
            GV P  VT+V VLS+CA L    VG      ++      N  L NAL +MYA CG +  
Sbjct: 247 NGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTK 306

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           A  +F  +  + ++SWTAI+ GY   G  ++A Q                          
Sbjct: 307 AQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQ-------------------------- 340

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNA 388
                LF+EM  S I PD    V +L+AC++ G  + G E+ K      +++      + 
Sbjct: 341 -----LFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSC 395

Query: 389 LIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           ++D+  + G +++AQ +   M ++ D   W A++    I+ + + +   F +++   + P
Sbjct: 396 MVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE--LEP 453

Query: 448 DEVTYVGVLS 457
           + + Y  +LS
Sbjct: 454 ENIGYYVLLS 463



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 153/340 (45%), Gaps = 15/340 (4%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L+  I  C S   L+    +H  T+K G  ++ +V N  +T    + G + YA K+F ++
Sbjct: 155 LLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMY-MKCGSVNYAQKLFDEM 213

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P   +  WN M+ GY++     N + +Y +M  + V PD  T   +L       A   G 
Sbjct: 214 PVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGH 273

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           E+   +   GF S+ F+ NALI+ Y  CG +  A+ +FD   +  +V+W A+  GY    
Sbjct: 274 EVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHG 333

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILE 254
             +   +LF EM R G+ P     V VLSAC+     D G    + +K   ++ P     
Sbjct: 334 HGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHY 393

Query: 255 NALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERD- 312
           + + D+    G +  A  +  ++  K D   W A++        V++A   F+++ E + 
Sbjct: 394 SCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEP 453

Query: 313 -----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
                YVL + +   Y   N  +  L +   M+   ++ D
Sbjct: 454 ENIGYYVLLSNI---YSNANNSKGVLRIRIMMKEKKLKKD 490


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/688 (35%), Positives = 393/688 (57%), Gaps = 36/688 (5%)

Query: 35   IHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            +HS  I++G   +  +   LV     C   GD   A KVF +I  P V  W+ +I    +
Sbjct: 352  VHSLAIRIGCELDEFISCCLVDMYSKCGLAGD---ALKVFVRIEDPDVVSWSAIITCLDQ 408

Query: 93   IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                +    ++  M  S V P+ +T   L+   T    + +G+ +H  V K+GF+    V
Sbjct: 409  KGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTV 468

Query: 153  QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             NAL++ Y   G V     +F+ +   D+++WNA+ SG+   +  D   ++F +M  +G 
Sbjct: 469  CNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGF 528

Query: 213  LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
             P   T + +L +C+ L D+D+GK+ H  + +  +  N  +  AL DMYA          
Sbjct: 529  NPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYA---------- 578

Query: 273  IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
                 KN+                 ++ A   F+++ +RD   WT ++ GY +  +  +A
Sbjct: 579  -----KNR----------------FLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKA 617

Query: 333  LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
            +  F +MQ   ++P+EFT+ S L+ C+ +  L+ G  + +   K     D+FV +AL+DM
Sbjct: 618  VKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDM 677

Query: 393  YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
            Y KCG VE A+ VF  ++ +D  +W  +I G + +G G K+L  F  ML    +PDEVT+
Sbjct: 678  YAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTF 737

Query: 453  VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
            +GVLSAC+H G+++EG+++F  ++  +GI P   HY CMVD+LGRAG  +E    I+ M 
Sbjct: 738  IGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMK 797

Query: 513  MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            +  N ++W  +LGAC++H + E  E AA ++ EL+P+ ++ Y+LL N++AA   WD+   
Sbjct: 798  LTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTN 857

Query: 573  LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
            +R ++  RG+KK PGCS +E+NG VH F++ D SHP+ +EI+LKL ++   L  VGY P+
Sbjct: 858  VRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPN 917

Query: 633  ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
               V  +V + +K+  ++ HSE+LA+AF L+S+    TIRI KNLR+C DCH   K +S 
Sbjct: 918  TDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISE 977

Query: 693  VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + ++E++VRD   FHHFK+GSCSC+++W
Sbjct: 978  ITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 166/618 (26%), Positives = 284/618 (45%), Gaps = 82/618 (13%)

Query: 23  IETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           + TC S   +++ K IH Q IK G+  +  + N LV    ++ G   YACKVF +IP   
Sbjct: 135 LRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVY-AKCGSANYACKVFGEIPERD 193

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           V  W  +I G+         V ++ +M +  V  + +T+   LK  +  + +EFGK++H 
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
             +K G  S +FV +AL+  Y  CGE+ +A  +F    K + V+WNA+ +G+ ++   ++
Sbjct: 254 EAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEK 313

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
              LF  M    +  +  T+  VL  CA   +L  G+  H          +  +   L D
Sbjct: 314 VLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVD 373

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP---------- 309
           MY+ CG  G AL++F  I++ DV+SW+AI+T    +GQ   A + F +M           
Sbjct: 374 MYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFT 433

Query: 310 -----------------------------ERDYVLWTAMIDGYLRVN------RFREALT 334
                                        E D  +  A++  Y+++       R  EA T
Sbjct: 434 LASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATT 493

Query: 335 -------------------------LFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
                                    +F +M      P+ +T +SIL +C++L  ++LG+ 
Sbjct: 494 NRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ 553

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           V   I KN +  + FVG AL+DMY K   +E A+ +F  ++++D F WT ++ G A +G 
Sbjct: 554 VHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQ 613

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
           G+K++  F QM R  + P+E T    LS C+    +D GR+  + M I+ G   +     
Sbjct: 614 GEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHS-MAIKAGQSGDMFVAS 672

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD-- 547
            +VD+  + G + +A EV+ +  +  +++ W  ++     H     A  A + +L+    
Sbjct: 673 ALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTV 731

Query: 548 PDNEAVYVLLCNIYAACN 565
           PD     V    + +AC+
Sbjct: 732 PDE----VTFIGVLSACS 745



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 192/422 (45%), Gaps = 35/422 (8%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+  T  + L+S       ++  + IH+   K G   + TV N LVT    + G ++  C
Sbjct: 429 PNQFTLAS-LVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTM-YMKIGSVQDGC 486

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF       +  WN ++ G+   ++   G+ I+  ML     P+ YTF  +L+  +   
Sbjct: 487 RVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLS 546

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            V+ GK++H  ++K   D + FV  AL+  Y     ++ A  IF+   K D+  W  + +
Sbjct: 547 DVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVA 606

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY +  Q ++  K F +M+R+GV P   T+   LS C+++  LD G++ H    +     
Sbjct: 607 GYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSG 666

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ + +AL DMYA CG +  A  +F  + ++D +SW  I+ GY   GQ   A + F+ M 
Sbjct: 667 DMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAML 726

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           +   V                               PDE T + +L+AC+++G +E G+ 
Sbjct: 727 DEGTV-------------------------------PDEVTFIGVLSACSHMGLIEEGKK 755

Query: 370 VKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
               + K   +   I     ++D+  + G   + +    EM L  +   W  ++    ++
Sbjct: 756 HFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMH 815

Query: 428 GH 429
           G+
Sbjct: 816 GN 817



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 153/303 (50%), Gaps = 33/303 (10%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L  CA   DL+ GK  H  V +  I P+  L N+L ++YA CG   +A ++FG I  +D
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V+SWTA++TG++  G                                   A+ LF EM+ 
Sbjct: 194 VVSWTALITGFVAEGYGS-------------------------------GAVNLFCEMRR 222

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             +  +EFT  + L AC+    LE G+ V     K    +D+FVG+AL+D+Y KCG++  
Sbjct: 223 EGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVL 282

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A+RVF  M +++  +W A++ G A  G  +K L++F +M  + I   + T   VL  C +
Sbjct: 283 AERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCAN 342

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
           +G +  G +    + I+ G E +E    C+VD+  + G   +AL+V   +   P+ + W 
Sbjct: 343 SGNLRAG-QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWS 400

Query: 522 ALL 524
           A++
Sbjct: 401 AII 403



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 2/181 (1%)

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L  CA+ G L  G+ +   + K+ +  D  + N+L+++Y KCG    A +VF E+  +D
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +WTA+I G    G+G  ++++F +M R  +  +E TY   L AC+    ++ G++  A
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
           +  I+ G   +      +VDL  + G +  A  V   MP K N++ W ALL       DA
Sbjct: 254 E-AIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALLNGFAQMGDA 311

Query: 534 E 534
           E
Sbjct: 312 E 312


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/700 (37%), Positives = 398/700 (56%), Gaps = 34/700 (4%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           ++ C S+   +++H   +K+G   +  V   L+    S  G ++ A KVF  +P   V  
Sbjct: 157 LKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLY-SRFGAVEVAHKVFVDMPVRDVGS 215

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN MI G+ +  +    + +   M   +V+ D  T   +L    +   V  G  +H +V+
Sbjct: 216 WNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVI 275

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K G +S VFV NALI+ Y   G +  A+ +FD     D+V+WN++ + Y++         
Sbjct: 276 KHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALG 335

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP-NLILENALTDMY 261
            F EM   G+ P  +T+V + S   +L D  +G+  H +V  C+ +  ++++ NAL +MY
Sbjct: 336 FFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMY 395

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           A  G                                +D AR  F+Q+P RD + W  +I 
Sbjct: 396 AKLGS-------------------------------IDCARAVFEQLPSRDVISWNTLIT 424

Query: 322 GYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
           GY +     EA+  +  M+    I P++ T VSIL A +++GAL+ G  +   + KN + 
Sbjct: 425 GYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLF 484

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D+FV   LIDMY KCG +E A  +F E+ ++    W A+I  L I+GHG+K+L +F  M
Sbjct: 485 LDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDM 544

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
               +  D +T+V +LSAC+H+G+VDE +  F  M  ++ I+PN  HYGCMVDL GRAG+
Sbjct: 545 RADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGY 604

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L +A  ++ NMP++ ++ +WG LL ACR+H +AE+   A+ ++LE+D +N   YVLL NI
Sbjct: 605 LEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNI 664

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YA   +W+   ++R +  DRG++KTPG S + +  VV  F AG++SHPQ  EIY +L  +
Sbjct: 665 YANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVL 724

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
            + +K +GY+PD S V  DV E++KE  +  HSE+LA+ FG+IS+ P   IRI KNLR+C
Sbjct: 725 NAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVC 784

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            DCH   K +S + +RE+IVRD  RFHHFK G CSC DYW
Sbjct: 785 GDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 176/395 (44%), Gaps = 36/395 (9%)

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           +   K+LH  +L  G    V +   L++ Y   G++ ++   F    + ++ +WN+M S 
Sbjct: 64  INVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSA 123

Query: 191 YKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           Y R  ++ ++     E+    GV P   T   VL AC  L D   G++ H +V +     
Sbjct: 124 YVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLK----- 175

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
                            MGF           DV    +++  Y   G V++A + F  MP
Sbjct: 176 -----------------MGF---------EHDVYVAASLIHLYSRFGAVEVAHKVFVDMP 209

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
            RD   W AMI G+ +     EAL +   M+T  ++ D  T+ S+L  CA    +  G  
Sbjct: 210 VRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVL 269

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           V  Y+ K+ +++D+FV NALI+MY K G ++ AQRVF  M  +D  +W ++I     N  
Sbjct: 270 VHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDD 329

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
              +L  F +ML   + PD +T V + S          GR     +     +E +     
Sbjct: 330 PVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGN 389

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
            +V++  + G ++ A  V + +P + + I W  L+
Sbjct: 390 ALVNMYAKLGSIDCARAVFEQLPSR-DVISWNTLI 423



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 151/325 (46%), Gaps = 40/325 (12%)

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
           LV  +C    +++V K+ H  +       +++L   L  +YA  G++  +   F +I+ K
Sbjct: 56  LVFRSCT---NINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRK 112

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           ++ SW ++V+ Y+ RG                               R+R+++    E+ 
Sbjct: 113 NIFSWNSMVSAYVRRG-------------------------------RYRDSMDCVTELL 141

Query: 341 T-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
           + S +RPD +T   +L AC +L     GE +  ++ K   ++D++V  +LI +Y + G V
Sbjct: 142 SLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAV 198

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           E A +VF +M  +D  +W AMI G   NG+  ++L +  +M    +  D VT   +L  C
Sbjct: 199 EVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPIC 258

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
             +  V  G        I+HG+E +      ++++  + G L +A  V   M ++ + + 
Sbjct: 259 AQSNDV-VGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVR-DLVS 316

Query: 520 WGALLGACRVHRDAEMAEMAAKQIL 544
           W +++ A   + D   A    K++L
Sbjct: 317 WNSIIAAYEQNDDPVTALGFFKEML 341


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/618 (39%), Positives = 362/618 (58%), Gaps = 35/618 (5%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           +S ++         QI S  I  G+  +P V +KL+ +  S   D  ++  +F +I +P+
Sbjct: 32  LSLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPN 91

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           V  WN M + YSR       + +Y  ML++   PDNY+FPF+LK   R   +  G+E+H 
Sbjct: 92  VFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHS 151

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYKRVKQF 197
             LK G    VFVQNALIS +  CG V+ AR +FD+  +   DVV+WN+M SGY +  ++
Sbjct: 152 STLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRY 211

Query: 198 DETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
           +   K+F E+   G L P  VT+V  LS C +L  LD+GK+ H        V ++ + ++
Sbjct: 212 ELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSS 271

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L DMY+ CG                               Q++ AR+ FD++P R+ V W
Sbjct: 272 LIDMYSKCG-------------------------------QIEDARKVFDRIPHRNTVCW 300

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           T+MI GY + + F+EA+ LFREMQ      D  TI  +L+AC + GAL  G W+  Y ++
Sbjct: 301 TSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCER 360

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           N ++ D+   NALI MY KCGD++KA  +F  + + D F+W+A+I GLA+NG  DK+L +
Sbjct: 361 NSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHL 420

Query: 437 FSQM-LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           FSQM + + I P+E+T++GVL AC H G VD+G  YF  MT  + + P   HYGCMVDLL
Sbjct: 421 FSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLL 480

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
           GRA  L EA + I+ +P++P+ ++W +LL ACR H + E+AE AAKQI EL+P      V
Sbjct: 481 GRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARV 540

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
           LL N+YA+ +RW + + +R+ +  + IKK PGCS +E++G+VHE    D+SHP+   IY 
Sbjct: 541 LLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYE 600

Query: 616 KLDEMTSDLKFVGYMPDI 633
            +  +   L+  G+ P I
Sbjct: 601 TMISINKALQSKGFDPGI 618


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/769 (33%), Positives = 405/769 (52%), Gaps = 83/769 (10%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           + +H+  +  G    P + N+L+   C +  ++ YA  +F KIP+P +    TM+  YS 
Sbjct: 16  RAVHAHILTSGFKPFPLIINRLIDHYC-KSFNIPYARYLFDKIPKPDIVAATTMLSAYSA 74

Query: 93  ID-----------------------------SHKN----GVLIYLDMLKSDVRPDNYTFP 119
                                          SH +     + +++ M +    PD +TF 
Sbjct: 75  AGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFS 134

Query: 120 FLLKGFTRDIAVE--FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM--------- 168
            +L   +  IA E    ++LHC V K+G  S   V NAL+S Y  C    +         
Sbjct: 135 SVLGALSL-IADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAA 193

Query: 169 ARGIFDVS------------------YKDDVVT---------------WNAMFSGYKRVK 195
           AR +FD +                    DD+V                WNAM SGY    
Sbjct: 194 ARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRG 253

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN----L 251
            ++E   L   M   G+     T   V+SA +     ++G++ H YV    + P+    L
Sbjct: 254 FYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVL 313

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + NAL  +Y  CG++  A  +F  +  KD++SW AI++G +N  +++ A   F +MP R
Sbjct: 314 SVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVR 373

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
             + WT MI G  +     E L LF +M+   + P ++     + +C+ LG+L+ G+ + 
Sbjct: 374 SLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLH 433

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
           + I +    + + VGNALI MY +CG VE A  VF  M   D  +W AMI  LA +GHG 
Sbjct: 434 SQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGV 493

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           +++ ++ +ML+  I+PD +T++ +LSAC+H G+V EGR YF  M + +GI P E HY  +
Sbjct: 494 QAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRL 553

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           +DLL RAG  +EA  V ++MP +P + +W ALL  C +H + E+   AA ++LEL P  +
Sbjct: 554 IDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQD 613

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             Y+ L N+YAA  +WD    +R+++ +RG+KK PGCS IE+  +VH F+  D  HP+  
Sbjct: 614 GTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVH 673

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            +Y  L+++  +++ +GY+PD   V  D+  E KE A+  HSEKLA+ +G++    G TI
Sbjct: 674 AVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATI 733

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+ KNLR+C DCH   K +S V DRE+IVRD+ RFHHF++G CSC +YW
Sbjct: 734 RVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 225/531 (42%), Gaps = 100/531 (18%)

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV----------- 181
           F + +H H+L  GF     + N LI  YC    +  AR +FD   K D+           
Sbjct: 14  FARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYS 73

Query: 182 ----------------------VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
                                 V++NAM + +          +LF +M+R G +P   T 
Sbjct: 74  AAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTF 133

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKI-------VPNLILENALTDMYAACGE------ 266
             VL A + + D    +  H     C++       VP+++  NAL   Y +C        
Sbjct: 134 SSVLGALSLIAD----EETHCQQLHCEVFKWGALSVPSVL--NALMSCYVSCASSPLVNS 187

Query: 267 ---MGFALEIFGNIK--NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
              M  A ++F       +D  +WT I+ GY+    +  AR+  + M +   V W AMI 
Sbjct: 188 CVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMIS 247

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           GY+    + EA  L R M +  I+ DE+T  S+++A +N G   +G  V  Y+ +  V+ 
Sbjct: 248 GYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQP 307

Query: 382 D----IFVGNALIDMYCKCGD-------------------------------VEKAQRVF 406
                + V NALI +Y +CG                                +E+A  +F
Sbjct: 308 SGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIF 367

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
           REM  +   TWT MI GLA NG G++ L +F+QM    + P +  Y G +++C+  G +D
Sbjct: 368 REMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLD 427

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            G++  + + IQ G + + +    ++ +  R G +  A  V   MP   +S+ W A++ A
Sbjct: 428 NGQQLHSQI-IQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYV-DSVSWNAMIAA 485

Query: 527 CRVHRDAEMAEMAAKQILELD--PDNEAVYVLLCNIYAACNRWDNFRELRQ 575
              H     A    +++L+ D  PD     +    I +AC+     +E R 
Sbjct: 486 LAQHGHGVQAIQLYEKMLKEDILPDR----ITFLTILSACSHAGLVKEGRH 532



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 150/373 (40%), Gaps = 58/373 (15%)

Query: 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWT 286
           A+L      +  H ++      P  ++ N L D Y     + +A  +F  I   D+++ T
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 287 AIVTGYINRGQVDMARQYFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
            +++ Y   G + +A Q F+  P   RD V + AMI  +   +    AL LF +M+    
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 345 RPDEFTIVSIL----------TACANL-------GALELGEWV----------------- 370
            PD FT  S+L          T C  L       GAL +   +                 
Sbjct: 127 VPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVN 186

Query: 371 ---------KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
                    K + +    + D      +I  Y +  D+  A+ +   M       W AMI
Sbjct: 187 SCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMI 246

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G    G  +++ D+  +M    I  DE TY  V+SA ++ G+ + GR+  A   ++  +
Sbjct: 247 SGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHA-YVLRTVV 305

Query: 482 EPNEAHY-----GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
           +P+  H+       ++ L  R G L EA  V   MP+K + + W A+L  C   R  E A
Sbjct: 306 QPS-GHFVLSVNNALITLYTRCGKLVEARRVFDKMPVK-DLVSWNAILSGCVNARRIEEA 363

Query: 537 -----EMAAKQIL 544
                EM  + +L
Sbjct: 364 NSIFREMPVRSLL 376



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           I +C  +  L   +Q+HSQ I+LG  ++ +V N L+T   S  G ++ A  VF  +P   
Sbjct: 417 IASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITM-YSRCGLVEAADTVFLTMPYVD 475

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE-LH 138
              WN MI   ++       + +Y  MLK D+ PD  TF  +L   +    V+ G+    
Sbjct: 476 SVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFD 535

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSG 190
              + +G        + LI   C  G    A+ + + + ++     W A+ +G
Sbjct: 536 TMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAG 588


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/704 (34%), Positives = 394/704 (55%), Gaps = 32/704 (4%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
             L++   +   + + KQ+HS  +K G+  +   +  L+     + GD++ A  +F    
Sbjct: 249 ASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYV-KCGDIETAHDIFNLGD 307

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           R +V LWN M+  Y +I        I+  M  + + P+ +T+P +L+  T    +E G++
Sbjct: 308 RTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQ 367

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H   +K GF+S ++V   LI  Y   G +D AR I ++  K DVV+W +M +GY +   
Sbjct: 368 IHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            +E    F EM+  GV P ++ +    SACA +K +  G + H  V       ++ + N 
Sbjct: 428 CEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNT 487

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L ++YA C                               G+ + A   F ++  +D + W
Sbjct: 488 LVNLYARC-------------------------------GRSEEAFSLFREIEHKDEITW 516

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
             +I G+ +   +++AL +F +M  +  + + FT +S ++A ANL  ++ G+ V     K
Sbjct: 517 NGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVK 576

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
               ++  V NALI +Y KCG +E A+ +F EM  +++ +W  +I   + +G G ++LD+
Sbjct: 577 TGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDL 636

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F QM +  + P++VT++GVL+AC+H G+V+EG  YF  M+  +G+ P   HY C+VD+LG
Sbjct: 637 FDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILG 696

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           RAG L+ A   +  MP+  N+++W  LL AC+VH++ E+ E+AAK +LEL+P + A YVL
Sbjct: 697 RAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVL 756

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L N YA   +W N  ++R+M+ DRGI+K PG S IE+   VH F  GD+ HP + +IY  
Sbjct: 757 LSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKF 816

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L E+   L  +GY  +   +F +  +E K+   + HSEKLA+AFGL++  P + +R++KN
Sbjct: 817 LSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKN 876

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C DCH   K  S V  RE+++RD  RFHHF  GSCSC DYW
Sbjct: 877 LRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/513 (27%), Positives = 243/513 (47%), Gaps = 39/513 (7%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           +IH+ ++  GL  +  + N L+    ++ G +  A +VF+++       W  M+ GY++ 
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLY-AKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQS 122

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
              K    +Y  M  + V P  Y    +L   T+      G+ +H  V K  F S  FV 
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           NALI+ Y   G   +A  +F      D VT+N + SG+ +    +   ++F EM+  G+ 
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  VT+  +L+ACA + DL  GK+ H Y+ +  +  + I E +L D+Y  CG++  A +I
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 274 FGNIKNKDVISWTAIVTGYINRGQV-DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           F      +V+ W  ++  Y   GQ+ D+A+ +                            
Sbjct: 303 FNLGDRTNVVLWNLMLVAY---GQISDLAKSF---------------------------- 331

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
             +F +MQ + I P++FT   IL  C   G +ELGE + +   KN  ++D++V   LIDM
Sbjct: 332 -EIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDM 390

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y K G ++KA+++   + ++D  +WT+MI G   +   +++L  F +M    + PD +  
Sbjct: 391 YSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGL 450

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
               SAC     + +G +  A + +  G   + + +  +V+L  R G   EA  + + + 
Sbjct: 451 ASAASACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREIE 509

Query: 513 MKPNSIVWGALL---GACRVHRDAEMAEMAAKQ 542
            K + I W  L+   G  R+++ A M  M   Q
Sbjct: 510 HK-DEITWNGLISGFGQSRLYKQALMVFMKMGQ 541


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/616 (39%), Positives = 367/616 (59%), Gaps = 36/616 (5%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           ML+  ++PDN+TFPF++K  +     EFG  +H  V+KFG+ S VF+ N+LI+ Y  C +
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
            +++R +FD     + V+W+A+     +  +  E   LF +M  +G  P+   I   L+A
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAI---LNA 117

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
            A ++  +     +R V E  +  +  +++A   M+A CG                    
Sbjct: 118 MACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCG-------------------- 157

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                      +V++AR+ FD +  +D V W   I+ Y++ +   EAL L ++M    I 
Sbjct: 158 -----------RVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIF 206

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF-VGNALIDMYCKCGDVEKAQR 404
           PD  T++ ++ AC+ L + +L   V   I      N +  V  ALID+Y KCG +  A++
Sbjct: 207 PDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARK 266

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           VF  M  ++  TW+AMI G  ++G G ++L++F QM +AS+ PD +T+V +LSAC+H+G+
Sbjct: 267 VFDGMQERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGL 325

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           V EG E F  M    G+ P   HY CMVD+LGRAG L+EA + I+ MP++PN+ VWGALL
Sbjct: 326 VAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALL 385

Query: 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
           GACR+H + ++AEM A+ + +LDP N   YV+L NIY    +      +R ++ +RG+KK
Sbjct: 386 GACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKK 445

Query: 585 TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED 644
             G S+IE+   ++ FVAGD+SHPQT  IY +L+ +   ++  GY PDI+ V  DV EE 
Sbjct: 446 IAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEET 505

Query: 645 KERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKT 704
           KE  +Y HSEKLA+ FGL++ GPG  IRI KNLR+C DCH   K +S V  RE++VRD  
Sbjct: 506 KESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAH 565

Query: 705 RFHHFKHGSCSCKDYW 720
           RFHHFK+G+CSC+DYW
Sbjct: 566 RFHHFKNGACSCRDYW 581



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 183/415 (44%), Gaps = 54/415 (13%)

Query: 18  PLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRK 74
           P I  I+ C  +   +   +IH   +K G  +   + N L+T    +    + + +VF +
Sbjct: 14  PFI--IKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMY-GKCDKYELSRQVFDE 70

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           +P  +   W+ +I    + D  K G  ++  ML    RP       +L       + E  
Sbjct: 71  MPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGA---ILNAMACVRSHEEA 127

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
            +++  V++ G D    VQ+A    +  CG V++AR +FD     D+VTW      Y + 
Sbjct: 128 DDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKA 187

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI-L 253
               E   L  +M  +G+ P ++T++ V+ AC+ L    +    H  +        L+ +
Sbjct: 188 DMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAV 247

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
           E AL D+Y  CG + +A ++F  ++ +++I+W+A+++GY   G                 
Sbjct: 248 ETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHG----------------- 290

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
             W             REAL LF +M+ S ++PD  T VSIL+AC++ G +  G W    
Sbjct: 291 --WG------------REALNLFDQMKAS-VKPDHITFVSILSACSHSGLVAEG-WECF- 333

Query: 374 IDKNKVKNDIFVG------NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
              N +  D  V         ++D+  + G +++A      M +R +   W A++
Sbjct: 334 ---NSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALL 385


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/594 (40%), Positives = 355/594 (59%), Gaps = 43/594 (7%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            +E  K++H H++K  F  ++ +              D   G+           WN + +
Sbjct: 90  TLEQTKQIHAHIIKTHFHHALQIPLN-----------DFPSGL------SPSAQWNFVIT 132

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
            Y +  Q      ++ ++ +      +     VL AC ++    +GK  H +V +  +  
Sbjct: 133 SYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDR 192

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISW----TAIVTGYINRGQVDMARQYF 305
           ++ + NAL  MY  C  + +A  +F  +  +DV+SW    TA++  Y   G + +ARQ F
Sbjct: 193 DVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLF 252

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
           + + ++  V WTAMI G +R NR  E   LF  MQ  NI P+E T+              
Sbjct: 253 NGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITM-------------- 298

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
                   ++K +V+ D  +  AL+DMY KCGD+  A R+F E + +D   W A+I G A
Sbjct: 299 --------LNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFA 350

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           ++G+G+++LD+F++M R  + P+++T++G+L AC+H G+V EG++ F  M    G+ P  
Sbjct: 351 MHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQI 410

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HYGCMVDLLGRAG L+EA E+IK+MP+KPN+IVWGAL+ ACR+H++ ++ E+AA Q+LE
Sbjct: 411 EHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLE 470

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           ++P+N    VL+ NIYAA NRW +   +R+ +   G+KK PG S+IE+NG VHEF+ GD+
Sbjct: 471 IEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQ 530

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           SHPQ + I   L EM   L   GY+PD S V L++ EE+KE A+  HSEKLAMAFGLIS+
Sbjct: 531 SHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLIST 590

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
            P   IRIVKNLR+C DCH   KL+S +Y R +IVRD+ RFHHF+ G CSC DY
Sbjct: 591 APSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 201/475 (42%), Gaps = 82/475 (17%)

Query: 9   PPSTLT-QETPLISPIETCESMH------QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           P STL    TPL +P  T  S H      Q KQIH+  IK                    
Sbjct: 65  PHSTLKFNPTPLQTP-PTSPSQHDLSTLEQTKQIHAHIIKTHF----------------- 106

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
              ++     F     PS   WN +I  Y++ +  +N + +Y  + K D   DN+  P +
Sbjct: 107 HHALQIPLNDFPSGLSPSA-QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSV 165

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           LK   +    + GKE+H  VLK G D  VFV NAL+  Y  C  V+ AR +FD   + DV
Sbjct: 166 LKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDV 225

Query: 182 VTW----NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           V+W     A+   Y +       R+LF  + +K    T V+   +++ C +   L+ G +
Sbjct: 226 VSWIPTTTALLDMYAKCGHLGLARQLFNGLTQK----TVVSWTAMIAGCIRSNRLEEGTK 281

Query: 238 AHRYVKECKIVPN-------------LILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
               ++E  I PN              IL  AL DMYA CG++  A  +F    ++D+  
Sbjct: 282 LFIRMQEENIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICM 341

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           W AI+TG+   G  +                               EAL +F EM+   +
Sbjct: 342 WNAIITGFAMHGYGE-------------------------------EALDIFAEMERQGV 370

Query: 345 RPDEFTIVSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           +P++ T + +L AC++ G +  G+ + +  +    +   I     ++D+  + G +++A 
Sbjct: 371 KPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAH 430

Query: 404 RVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            + + M ++ +   W A++    +  H +  L   +      I P+   Y  ++S
Sbjct: 431 EMIKSMPIKPNTIVWGALVAACRL--HKNPQLGELAATQLLEIEPENCGYNVLMS 483


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/553 (42%), Positives = 342/553 (61%), Gaps = 32/553 (5%)

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           A  +FD   + D+V +N M  GY R         LF ++   G+ P   T   +L ACA 
Sbjct: 74  AHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACAS 133

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
            K L+ G++ H    +  +  N+ +   L +MY AC EM                     
Sbjct: 134 CKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEM--------------------- 172

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
                     D AR+ FD++ E   V + AMI GY R +R  EAL+LFRE+Q  N++P +
Sbjct: 173 ----------DCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTD 222

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T++S+L++CA LGAL+LG+W+  Y+ KN     + V  ALIDMY KCG ++ A  VF  
Sbjct: 223 VTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFEN 282

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M  +D   W+AMI+  AI+GHG K++ +F +M +A   PDE+T++G+L AC+HTG+V+EG
Sbjct: 283 MAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEG 342

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
            EYF  M  ++G+ P   HYGCMVDLLGRAG L EA E I  +P++P  I+W  LL AC 
Sbjct: 343 FEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACG 402

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
            H + E+ +   +QI ELD  +   Y++L N+ A   RW++   +R+++ +RG+ K PGC
Sbjct: 403 SHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGC 462

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF-LDVGEEDKER 647
           S +E+N VVHEF +GD  H  + +++  LDE+  +LK VGY+P+ S VF  D+ +E+KE 
Sbjct: 463 SSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEV 522

Query: 648 AVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFH 707
            +  HSEKLA+ FGL+++ PG TIR+VKNLR+C DCH  AKL+S+++DR++I+RD  RFH
Sbjct: 523 TLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFH 582

Query: 708 HFKHGSCSCKDYW 720
           HFK G CSC+DYW
Sbjct: 583 HFKDGKCSCEDYW 595



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 156/513 (30%), Positives = 252/513 (49%), Gaps = 76/513 (14%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC--SEK 62
           + + PP++ +  T  +S +  C S+ +LKQ+ +  IK  L ++ +V  K + FC      
Sbjct: 9   TPMCPPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTT 68

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
             M++A  +F +IP+P + L+NTM +GY+R D+      ++  +L S + PD+YTFP LL
Sbjct: 69  TSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLL 128

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K      A+E G++LHC  +K G   +V+V   LI+ Y  C E+D AR +FD  ++  VV
Sbjct: 129 KACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVV 188

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           T+NAM +GY R  + +E   LF E++ + + PT VT++ VLS+CA L  LD+GK  H YV
Sbjct: 189 TYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYV 248

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
           K+      + ++ AL DMYA CG +  A+ +F N+  +D  +W+A++  Y   G      
Sbjct: 249 KKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHG---- 304

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                       +A++LF+EM+ +   PDE T + +L AC++ G
Sbjct: 305 ---------------------------LKAVSLFKEMRKAGTEPDEITFLGLLYACSHTG 337

Query: 363 ALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            +E G E+     DK  V   I     ++D+  + G +E+A                  I
Sbjct: 338 LVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYE---------------FI 382

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
           VGL I                    P  + +  +LSAC   G V+ G+       I+   
Sbjct: 383 VGLPIR-------------------PTPILWRTLLSACGSHGNVELGKR-----VIEQIF 418

Query: 482 EPNEAHYG---CMVDLLGRAGHLNEALEVIKNM 511
           E +++H G    + +L  RAG   +   V K M
Sbjct: 419 ELDDSHGGDYIILSNLCARAGRWEDVNYVRKLM 451


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/584 (39%), Positives = 363/584 (62%), Gaps = 1/584 (0%)

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  +++ G     F+   L+ +   C  +D A  IF  ++  +V  + A+  G+     
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
           + E  +L+  M  + +LP +  +  +L AC     L  G+  H    +     N ++   
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 187

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           + ++Y  CGE+G A  +F  +  +DV++ T +++ Y ++G V+ A   F ++  +D V W
Sbjct: 188 IMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCW 246

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           TAMIDG++R      AL  FR MQ  N+RP+EFTIV +L+AC+ LGALE+G WV +Y+ K
Sbjct: 247 TAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
            +++ ++FVGNALI+MY +CG +++AQ VF EM  +D  T+  MI GL++NG   +++++
Sbjct: 307 FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIEL 366

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F  M+   + P  VT+VGVL+AC+H G+VD G E F  M   + +EP   HYGCMVDLLG
Sbjct: 367 FRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLG 426

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R G L EA ++I+ M M P+ I+ G LL AC++H++ E+ E  AK++ +    +   YVL
Sbjct: 427 RVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVL 486

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L ++YA+  +W    ++R  + + G++K PGCS IE+N  +HEF+ GD  HPQ + IY K
Sbjct: 487 LSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEK 546

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L+E+   L+  GY P+   V  D+ + +KE A+  HSE+LA+ +GLIS+ P   IR++KN
Sbjct: 547 LEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKN 606

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C DCH   KL++ +  R+++VRD+ RFH+F++G+CSC DYW
Sbjct: 607 LRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/508 (26%), Positives = 236/508 (46%), Gaps = 72/508 (14%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           SNS+     +L Q+  +IS ++    ++Q+  IH+Q I+ G   +P +  +L+   CS+ 
Sbjct: 37  SNSNPKSLKSLDQKQ-IISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLR-SCSKC 94

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
             + YA ++F+    P+V L+  +I G+    ++   + +Y  ML   + PDNY    +L
Sbjct: 95  HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASIL 154

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------- 174
           K     +A+  G+E+H   LK GF S+  V+  ++  Y  CGE+  AR +F+        
Sbjct: 155 KACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVA 214

Query: 175 -----VSYKD-----------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
                 SY D                 D V W AM  G+ R ++ +   + F  M+ + V
Sbjct: 215 STVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENV 274

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P   TIV VLSAC++L  L++G+  H Y+++ +I  NL + NAL +MY+ CG +  A  
Sbjct: 275 RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQT 334

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  +K++DVI++  +++G    G                               + R+A
Sbjct: 335 VFDEMKDRDVITYNTMISGLSMNG-------------------------------KSRQA 363

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALID 391
           + LFR M    +RP   T V +L AC++ G ++ G E   +     +V+  I     ++D
Sbjct: 364 IELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVD 423

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING-HGDKSLDMFSQM---LRASIIP 447
           +  + G +E+A  + R M    K T   +++G  ++     K+L++  Q+   L      
Sbjct: 424 LLGRVGRLEEAYDLIRTM----KMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQA 479

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADM 475
           D  TYV +      +G   E  +  A M
Sbjct: 480 DSGTYVLLSHVYASSGKWKEAAQVRAKM 507



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 170/374 (45%), Gaps = 37/374 (9%)

Query: 11  STLTQETPLISPIETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDM 65
           S L     + S ++ C S   + + +++HS+ +KLG  +N  V+ +++     C E GD 
Sbjct: 142 SILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDA 201

Query: 66  KY---------------------------ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKN 98
           +                            A  VF ++ R     W  MI G+ R +    
Sbjct: 202 RRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNR 261

Query: 99  GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
            +  +  M   +VRP+ +T   +L   ++  A+E G+ +H ++ KF  + ++FV NALI+
Sbjct: 262 ALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALIN 321

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y  CG +D A+ +FD     DV+T+N M SG     +  +  +LF  M  + + PT+VT
Sbjct: 322 MYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVT 381

Query: 219 IVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
            V VL+AC+    +D G +  H   ++ ++ P +     + D+    G +  A ++   +
Sbjct: 382 FVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM 441

Query: 278 K-NKDVISWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREAL 333
           K   D I    +++       +++  Q   ++ +R   D   +  +   Y    +++EA 
Sbjct: 442 KMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAA 501

Query: 334 TLFREMQTSNIRPD 347
            +  +M+ + ++ +
Sbjct: 502 QVRAKMKEAGMQKE 515


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/586 (40%), Positives = 349/586 (59%), Gaps = 4/586 (0%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ELH   ++ G D    V   L   Y     +D+   +  ++     V + +    +    
Sbjct: 53  ELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRG 112

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
                  L  EM  +G++PTS T+   L AC     L +G+  H Y  +  +  +  +  
Sbjct: 113 LHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHAYAFKLALAGDSYVAT 169

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           AL  MYA  G+   A  +F  + +  V+  TA++T Y   G +D AR+ FD MP +D++ 
Sbjct: 170 ALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFIC 229

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI- 374
           W AMIDGY +  R  EAL LFR M  S + PDE  I+  L+A A LG  E G W+ +Y+ 
Sbjct: 230 WNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVK 289

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           +  +V+ +  VG ALIDMYCKCG +E A  VF  +  KD   W AMI G A++G   K+L
Sbjct: 290 NSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKAL 349

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           +MFSQ+    + P ++T++G+L+AC+H+G+VDEG ++F  M  ++ I P   HYGCMVDL
Sbjct: 350 EMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDL 409

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG + EA  ++++M + P++++W +LL ACR+H++  + +  A  ++     N  +Y
Sbjct: 410 LGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMY 469

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           +LL NIYAA   W+    +R M+   GI+K PGCS IE+   V+EFVAGD SHP+T EIY
Sbjct: 470 ILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIY 529

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L++M   +K  G++P    V  D+ E  KE+A+  HSEKLA+AFGLIS+ PG TI+IV
Sbjct: 530 AMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIV 589

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR C DCH + KL+S +  R+++ RD+ RFHHF  GSC+C DYW
Sbjct: 590 KNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/586 (40%), Positives = 349/586 (59%), Gaps = 4/586 (0%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ELH   ++ G D    V   L   Y     +D+   +  ++     V + +    +    
Sbjct: 52  ELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRG 111

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
                  L  EM  +G++PTS T+   L AC     L +G+  H Y  +  +  +  +  
Sbjct: 112 LHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHAYAFKLALAGDSYVAT 168

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           AL  MYA  G+   A  +F  + +  V+  TA++T Y   G +D AR+ FD MP +D++ 
Sbjct: 169 ALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFIC 228

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI- 374
           W AMIDGY +  R  EAL LFR M  S + PDE  I+  L+A A LG  E G W+ +Y+ 
Sbjct: 229 WNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVK 288

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           +  +V+ +  VG ALIDMYCKCG +E A  VF  +  KD   W AMI G A++G   K+L
Sbjct: 289 NSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKAL 348

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           +MFSQ+    + P ++T++G+L+AC+H+G+VDEG ++F  M  ++ I P   HYGCMVDL
Sbjct: 349 EMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDL 408

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG + EA  ++++M + P++++W +LL ACR+H++  + +  A  ++     N  +Y
Sbjct: 409 LGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMY 468

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           +LL NIYAA   W+    +R M+   GI+K PGCS IE+   V+EFVAGD SHP+T EIY
Sbjct: 469 ILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIY 528

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L++M   +K  G++P    V  D+ E  KE+A+  HSEKLA+AFGLIS+ PG TI+IV
Sbjct: 529 AMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIV 588

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR C DCH + KL+S +  R+++ RD+ RFHHF  GSC+C DYW
Sbjct: 589 KNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/604 (40%), Positives = 388/604 (64%), Gaps = 8/604 (1%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKGDMKYACKVFRKIPRPSVC 81
           +++CESM  L QIH++  ++GL  N     K+V FC    +G ++YA +V   +  P + 
Sbjct: 23  LQSCESMAHLTQIHAKIFRVGLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLV 82

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           ++N MIK  ++ ++ +  ++++ ++ K  + PDN+T P + K       V  G+++H +V
Sbjct: 83  MYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYV 142

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           +K GFD+ V   N+++  Y   G++++A+ +FD   + DVV+WN + S Y   ++F++  
Sbjct: 143 VKSGFDACVC--NSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAI 200

Query: 202 KLFGEMERKGVLPT-SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
            +F  M R+  L     T+V  LSAC+ L++ +VG+  HRYV + ++     + NAL DM
Sbjct: 201 AVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYV-DAELEMTTKIGNALLDM 259

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           Y  CG +  A  IF  + NK+VI WT++V+GY + G +D AR+ F++ P RD VLWTAMI
Sbjct: 260 YCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMI 319

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
           +GY++ N F EAL LFR+MQ   +RPD F +V++L  CA  GALE G+W+  YI +N + 
Sbjct: 320 NGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSIT 379

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D  VG AL+D+Y KCG VEKA  VF EM  +D  +WT++I GLA+NG   K+LD FSQM
Sbjct: 380 LDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQM 439

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
             A   PD++T++GVL+AC H G+V+EGR YF  MT  + I+P   HY C++DLL RAG 
Sbjct: 440 EEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGL 499

Query: 501 LNEALEVIKNMPMKPNSIV---WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
           L+EA  +++ +P++ + IV   + +LL ACR + + +M+E   +++  ++  + +V+ LL
Sbjct: 500 LDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVKDSSVHTLL 559

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            ++YA+ NRW++   +R+ + + GI+K PGCS IE+NGV+HEF+ G  SH +  +I+  L
Sbjct: 560 ASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMVGGPSHMEMDDIHSVL 619

Query: 618 DEMT 621
            ++T
Sbjct: 620 GQVT 623


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/508 (44%), Positives = 337/508 (66%), Gaps = 32/508 (6%)

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  VT+V ++ ACA+L +L+ GK  H Y KE  +  NL + NA+ DMY  C +       
Sbjct: 9   PDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDD------- 61

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                                   ++ A++ F+++ E+D + WT+M+ G  +   F+E+L
Sbjct: 62  ------------------------IESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESL 97

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LFR+MQ   I PDE T+V +L+ACA  GAL+ G+++   IDK ++  D+ +  AL+DMY
Sbjct: 98  ALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMY 157

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KCG ++ A +VFR M  ++ FTW AMI GLA++GHG+ ++ +F QM    ++PD+VT++
Sbjct: 158 AKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFI 217

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            +L AC+H G+VDEG   F  M  +  IEP   HYGC+VDLL RA  +++AL  I+NMP+
Sbjct: 218 ALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPI 277

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           K NS++W  LLGACR     ++AE   ++++EL+PD+   YV+L N+YA  ++WD+  +L
Sbjct: 278 KANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKL 337

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF-VGYMPD 632
           R+ + ++GI+KTPGCS IE+NG++H+FVAGD+SH QT++IY  ++EMT  +    G++P 
Sbjct: 338 RKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPG 397

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            + V  D+ EE+KE +++ HSEKLA+A GLIS+  G  IRIVKNLR+C DCH   K+ S 
Sbjct: 398 TANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSK 457

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           VY+RE++ RD++RFHHFK GSCSC D+W
Sbjct: 458 VYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 162/324 (50%), Gaps = 33/324 (10%)

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
           ++RPD  T   L+    +   +E GK LH +  + G D ++ V NA++  YC C +++ A
Sbjct: 6   NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229
           + +F+   + DV++W +M SG  +   F E+  LF +M+   + P  +T+V VLSACA+ 
Sbjct: 66  QEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQT 125

Query: 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289
             LD GK  H  + + +I  +L+LE AL DMYA CG +  AL++F  ++ ++V +W A++
Sbjct: 126 GALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMI 185

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
            G    G  +                               +A++LF +M+   + PD+ 
Sbjct: 186 GGLAMHGHGE-------------------------------DAISLFDQMEXDKLMPDDV 214

Query: 350 TIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
           T +++L AC++ G ++ G    +   +K +++  +     ++D+ C+   V+ A      
Sbjct: 215 TFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIEN 274

Query: 409 M-LRKDKFTWTAMIVGLAINGHGD 431
           M ++ +   W  ++      GH D
Sbjct: 275 MPIKANSVLWATLLGACRSGGHFD 298



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/218 (38%), Positives = 129/218 (59%), Gaps = 4/218 (1%)

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
           N+RPDE T+VS++ ACA LG LE G+ + +Y  +  +  ++ V NA++DMYCKC D+E A
Sbjct: 6   NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           Q VF  +  KD  +WT+M+ GLA +G+  +SL +F +M    I PDE+T VGVLSAC  T
Sbjct: 66  QEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQT 125

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G +D+G+ Y   +  +  I  +      +VD+  + G ++ AL+V + M ++ N   W A
Sbjct: 126 GALDQGK-YIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNA 183

Query: 523 LLGACRVHRDAEMAEMAAKQIL--ELDPDNEAVYVLLC 558
           ++G   +H   E A     Q+   +L PD+     LLC
Sbjct: 184 MIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLC 221



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 160/340 (47%), Gaps = 15/340 (4%)

Query: 16  ETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           E  ++S +  C  +  L   K +HS + +LGL  N +V N ++   C +  D++ A +VF
Sbjct: 11  EVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYC-KCDDIESAQEVF 69

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
            +I    V  W +M+ G ++    +  + ++  M    + PD  T   +L    +  A++
Sbjct: 70  NRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALD 129

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            GK +H  + KF  +  + ++ AL+  Y  CG +D+A  +F      +V TWNAM  G  
Sbjct: 130 QGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLA 189

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNL 251
                ++   LF +ME   ++P  VT + +L AC+    +D G    + +K + +I P +
Sbjct: 190 MHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRM 249

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPE 310
                + D+     ++  AL    N+  K + + W  ++    + G  D+A +   ++ E
Sbjct: 250 EHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIE 309

Query: 311 RD------YVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
            +      YV+ + +   Y  V+++  AL L ++M+   I
Sbjct: 310 LEPDSCGRYVMLSNL---YAGVSQWDHALKLRKQMKNKGI 346


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/704 (35%), Positives = 397/704 (56%), Gaps = 32/704 (4%)

Query: 17   TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
            +  ++  ET + + + K+IH   ++  + ++  V   L+    ++ G+ + A ++F  + 
Sbjct: 334  SAFLAAAETID-LEKGKEIHGCALQQRIDSDILVATPLMVMY-AKCGETEKAKQLFWGLQ 391

Query: 77   RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
               +  W+ +I    +    +  + ++ +M    ++P+  T   +L        ++ GK 
Sbjct: 392  GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS 451

Query: 137  LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
            +HC  +K   DS +    AL+S Y  CG    A   F+     D+VTWN++ +GY ++  
Sbjct: 452  IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511

Query: 197  FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
                  +F ++    + P + T+V V+ ACA L DLD G   H  + +     +  ++NA
Sbjct: 512  PYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNA 571

Query: 257  LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
            L DMYA CG +  A  +F    NK   +                          +D V W
Sbjct: 572  LIDMYAKCGSLPSAEFLF----NKTDFT--------------------------KDEVTW 601

Query: 317  TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
              +I  Y++    +EA++ F +M+  N  P+  T VS+L A A L A   G      I +
Sbjct: 602  NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661

Query: 377  NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
                ++  VGN+LIDMY KCG +  ++++F EM  KD  +W AM+ G A++GHGD+++ +
Sbjct: 662  MGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIAL 721

Query: 437  FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
            FS M  + +  D V++V VLSAC H G+V+EGR+ F  M+ ++ I+P+  HY CMVDLLG
Sbjct: 722  FSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLG 781

Query: 497  RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
            RAG  +E L  IK MP++P++ VWGALLG+CR+H + ++ E+A   +++L+P N A +V+
Sbjct: 782  RAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVV 841

Query: 557  LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
            L +IYA   RW +  + R  + D G+KKTPGCS +E+   VH F  GDKSHPQ + ++L 
Sbjct: 842  LSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLL 901

Query: 617  LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
             + +   ++ +GY+PD S V  +V EEDKE  +Y HSE+LA+ F L+++ PG TI+IVKN
Sbjct: 902  WNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKN 961

Query: 677  LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            LR+C DCH   K +S +  R +IVRD TRFHHF+ G CSC DYW
Sbjct: 962  LRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/516 (27%), Positives = 249/516 (48%), Gaps = 37/516 (7%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           ST T        + +C+ ++ L QIH+Q I  G   + ++ + +  +    K D+  A  
Sbjct: 27  STYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDL--ARS 84

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF   P PS  LWN+MI+ Y+R   +   + +Y  M++  + PD YTF F+LK  T  + 
Sbjct: 85  VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALN 144

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           ++ G   H  + + G +  VF+   L+  Y   G++  AR +FD   K DVV WNAM +G
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 204

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
             + +   E    F  M+  GV P+SV+++ +     KL ++++ +  H YV       +
Sbjct: 205 LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF--S 262

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
             + N L D+Y+ CG+                               VD+AR+ FDQM +
Sbjct: 263 SAVSNGLIDLYSKCGD-------------------------------VDVARRVFDQMVD 291

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           +D V W  M+ GY     F E L LF +M+  N+R ++ + VS   A A    LE G+ +
Sbjct: 292 QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEI 351

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
                + ++ +DI V   L+ MY KCG+ EKA+++F  +  +D   W+A+I  L   G+ 
Sbjct: 352 HGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYP 411

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           +++L +F +M    + P+ VT + +L AC    ++  G+      T++  ++ + +    
Sbjct: 412 EEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC-FTVKADMDSDLSTGTA 470

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           +V +  + G    AL     M  + + + W +L+  
Sbjct: 471 LVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLING 505


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/607 (39%), Positives = 365/607 (60%), Gaps = 21/607 (3%)

Query: 135 KELHCHVLKFG--FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H  ++K G   D+++  +   +S      ++  A  +FD   + +   WN +     
Sbjct: 32  KQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALA 91

Query: 193 RV--KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
               +  D        +    V P   T   VL ACA +  L  GK+ H  + +  +V +
Sbjct: 92  ETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDD 151

Query: 251 LILENALTDMYAACGEMGFALEIF-GNIKNKD---------------VISWTAIVTGYIN 294
             +   L  MY  CG M  A  +F  N++  D               V+    +V GY  
Sbjct: 152 EFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYAR 211

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF-REMQTSNIRPDEFTIVS 353
            G +  AR+ FD+M +R  V W  MI GY +   ++EA+ +F R MQ  ++ P+  T+VS
Sbjct: 212 VGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVS 271

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L A + LG LELG+WV  Y +KNK++ D  +G+AL+DMY KCG +EKA +VF  + + +
Sbjct: 272 VLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNN 331

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             TW A+I GLA++G  +   +  S+M +  I P +VTY+ +LSAC+H G+VDEGR +F 
Sbjct: 332 VITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFN 391

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
           DM    G++P   HYGCMVDLLGRAG+L EA E+I NMPMKP+ ++W ALLGA ++H++ 
Sbjct: 392 DMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNI 451

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           ++   AA+ ++++ P +   YV L N+YA+   WD    +R M+ D  I+K PGCS IE+
Sbjct: 452 KIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEI 511

Query: 594 NGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHS 653
           +GV+HEF+  D SH + K+I+  L+E+++ L   G+MPD ++V L + E+ KE  ++ HS
Sbjct: 512 DGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHS 571

Query: 654 EKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
           EK+A+AFGLIS+ P   + IVKNLR+C DCH   KL+S +Y+R++++RD+ RFHHF+HGS
Sbjct: 572 EKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGS 631

Query: 714 CSCKDYW 720
           CSC DYW
Sbjct: 632 CSCMDYW 638



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 217/472 (45%), Gaps = 85/472 (18%)

Query: 4   NSSISPPSTLTQETPLISP-IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SE 61
           N+ +  P+T +    L  P I+ C+SM +LKQ+H+  +K G   +  +  +++     S+
Sbjct: 2   NALMFQPNTASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSD 61

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI-DSHKNGVLIYLDML-KSDVRPDNYTFP 119
             D+ YA  VF ++P  +   WNT+I+  +   D H + +L++  ML ++ V P+ +TFP
Sbjct: 62  FRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFP 121

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVD------------ 167
            +LK       +  GK++H  +LKFG     FV   L+  Y +CG ++            
Sbjct: 122 SVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEG 181

Query: 168 -----------------------------------MARGIFDVSYKDDVVTWNAMFSGYK 192
                                               AR +FD   +  VV+WN M SGY 
Sbjct: 182 VDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYA 241

Query: 193 RVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
           +   + E  ++F  M + G VLP  VT+V VL A ++L  L++GK  H Y ++ KI  + 
Sbjct: 242 QNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDD 301

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
           +L +AL DMYA CG +  A+++F  +   +VI+W A++ G    G+ +    Y  +    
Sbjct: 302 VLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSR---- 357

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWV 370
                                      M+   I P + T ++IL+AC++ G ++ G  + 
Sbjct: 358 ---------------------------MEKCGISPSDVTYIAILSACSHAGLVDEGRSFF 390

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
              ++   +K  I     ++D+  + G +E+A+ +   M ++ D   W A++
Sbjct: 391 NDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALL 442



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 136/291 (46%), Gaps = 6/291 (2%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFL 121
           G++K A ++F ++ + SV  WN MI GY++   +K  + I+  M++  DV P+  T   +
Sbjct: 213 GNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSV 272

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L   +R   +E GK +H +  K        + +AL+  Y  CG ++ A  +F+   +++V
Sbjct: 273 LPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNV 332

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR-AHR 240
           +TWNA+  G     + ++       ME+ G+ P+ VT + +LSAC+    +D G+   + 
Sbjct: 333 ITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFND 392

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVD 299
            V    + P +     + D+    G +  A E+  N+  K D + W A++        + 
Sbjct: 393 MVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIK 452

Query: 300 M---ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           +   A +   QM   D   + A+ + Y     +     +   M+  +IR D
Sbjct: 453 IGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKD 503


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/591 (40%), Positives = 361/591 (61%), Gaps = 6/591 (1%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K+ H  ++     S     N L+     C  +  A  +FD   + D+  +N M   +   
Sbjct: 33  KQTHAQLITTALISHPVSANKLLKL-AACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLS 91

Query: 195 KQF-DETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
                 +  +F  + +  G+ P   + V   SAC     +  G++   +  +  +  N+ 
Sbjct: 92  PHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVF 151

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + NAL  MY   G +G + ++F    ++D+ SW  ++  Y+  G + +A++ FD M ERD
Sbjct: 152 VVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERD 211

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W+ +I GY++V  F EAL  F +M     +P+E+T+VS L AC+NL AL+ G+W+  
Sbjct: 212 VVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHA 271

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK-FTWTAMIVGLAINGHGD 431
           YI K ++K +  +  ++IDMY KCG++E A RVF E   K K + W AMI G A++G  +
Sbjct: 272 YIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPN 331

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           +++++F QM    I P++VT++ +L+AC+H  MV+EG+ YF  M   + I P   HYGCM
Sbjct: 332 EAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCM 391

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLL R+G L EA ++I +MPM P+  +WGALL ACR+++D E      + I  +DP++ 
Sbjct: 392 VDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHI 451

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMI-LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
             +VLL NIY+   RW+  R LR+   + R  KK PGCS IE+ G  H+F+ GD+SHPQ+
Sbjct: 452 GCHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQS 511

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQHSEKLAMAFGLISSGPGV 669
           +EIY  LDEMT+ LK  GY+P++ E+  D+  EEDKE A+  HSEKLA+AFGL+++  G 
Sbjct: 512 REIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGT 571

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            IRIVKNLR+C DCH+  K +S VY+R +IVRD+TR+HHF+ G CSCKDYW
Sbjct: 572 PIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 234/524 (44%), Gaps = 110/524 (20%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+S I++C+SM Q+KQ H+Q I   L+++P   NKL+         + YA K+F +IP+P
Sbjct: 19  LVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAAC--ASLSYAHKLFDQIPQP 76

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR--PDNYTFPFLLKGFTRDIAVEFGKE 136
            + ++NTMIK +S      +  LI    L  D+   P+ Y+F F        + V+ G++
Sbjct: 77  DLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQ 136

Query: 137 LHCHVLKFGFDSSVFVQNA-------------------------------LISTYCLCGE 165
           +  H +K G +++VFV NA                               LI+ Y   G 
Sbjct: 137 VRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGN 196

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           + +A+ +FD   + DVV+W+ + +GY +V  F E    F +M + G  P   T+V  L+A
Sbjct: 197 MSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAA 256

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD-VIS 284
           C+ L  LD GK  H Y+ + +I  N  L  ++ DMYA CGE+  A  +F   K K  V  
Sbjct: 257 CSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWL 316

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           W A++ G+   G           MP                     EA+ +F +M+   I
Sbjct: 317 WNAMIGGFAMHG-----------MPN--------------------EAINVFEQMKVEKI 345

Query: 345 RPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
            P++ T +++L AC++   +E G+ + +  +    +  +I     ++D+  + G +++A+
Sbjct: 346 SPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAE 405

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
                                          DM S M  A   PD   +  +L+AC    
Sbjct: 406 -------------------------------DMISSMPMA---PDVAIWGALLNACRIYK 431

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMV---DLLGRAGHLNEA 504
            ++ G   +    I  G++PN  H GC V   ++   +G  NEA
Sbjct: 432 DMERG---YRIGRIIKGMDPN--HIGCHVLLSNIYSTSGRWNEA 470


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 270/752 (35%), Positives = 395/752 (52%), Gaps = 92/752 (12%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPR 77
           IS +   ES H L      ++  G ++N  V N LV     C    D +   KVF ++  
Sbjct: 140 ISSVRCGESAHAL------SLVTGFISNVFVGNALVAMYSRCRSLSDAR---KVFDEMSV 190

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             V  WN++I+ Y+++   K  + ++  M      RPDN T   +L           GK+
Sbjct: 191 WDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ 250

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           LHC  +      ++FV N L+  Y  CG +D A  +F      DVV+WNAM +GY ++ +
Sbjct: 251 LHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGR 310

Query: 197 FDETRKLFGEMERK-----------------------------------GVLPTSVTIVL 221
           F++  +LF +M+ +                                   G+ P  VT++ 
Sbjct: 311 FEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLIS 370

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIV--------PNLILENALTDMYAACGEMGFALEI 273
           VLS CA +  L  GK  H Y  +  I          N+++ N L DMYA C         
Sbjct: 371 VLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI-NQLIDMYAKCK-------- 421

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP--ERDYVLWTAMIDGYLRVNRFRE 331
                                  +VD AR  FD +   ERD V WT MI GY +     +
Sbjct: 422 -----------------------KVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANK 458

Query: 332 ALTLFREM--QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN-DIFVGNA 388
           AL L  EM  +    RP+ FTI   L ACA+L AL +G+ +  Y  +N+     +FV N 
Sbjct: 459 ALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNC 518

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDMY KCG +  A+ VF  M+ K++ TWT+++ G  ++G+G+++L +F +M R     D
Sbjct: 519 LIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLD 578

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
            VT + VL AC+H+GM+D+G EYF  M    G+ P   HY C+VDLLGRAG LN AL +I
Sbjct: 579 GVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLI 638

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
           + MPM+P  +VW A L  CR+H   E+ E AA++I EL  +++  Y LL N+YA   RW 
Sbjct: 639 EEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWK 698

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
           +   +R ++  +G+KK PGCS +E       F  GDK+HP  KEIY  L +    +K +G
Sbjct: 699 DVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIG 758

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           Y+P+      DV +E+K+  +++HSEKLA+A+G++++  G  IRI KNLR+C DCH    
Sbjct: 759 YVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFT 818

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +S + D ++I+RD +RFHHFK+GSCSCK YW
Sbjct: 819 YMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 176/548 (32%), Positives = 282/548 (51%), Gaps = 27/548 (4%)

Query: 11  STLTQETPLISP--IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           S  +   P I+P  I  C+++ Q+K IH + +  G+LT     + + T+     G + +A
Sbjct: 21  SLFSTSAPEITPPFIHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYI--SVGCLSHA 78

Query: 69  CKVFRKIPRPS---VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             + R+ P PS   V  WN++I+ Y         + ++  M      PDNYTFPF+ K  
Sbjct: 79  VSLLRRFP-PSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKAC 137

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
               +V  G+  H   L  GF S+VFV NAL++ Y  C  +  AR +FD     DVV+WN
Sbjct: 138 GEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWN 197

Query: 186 AMFSGYKRVKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           ++   Y ++ +     ++F  M  + G  P ++T+V VL  CA L    +GK+ H +   
Sbjct: 198 SIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVT 257

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
            +++ N+ + N L DMYA CG M  A  +F N+  KDV+SW A+V GY   G+ + A + 
Sbjct: 258 SEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRL 317

Query: 305 FDQMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           F++M E     D V W+A I GY +     EAL + R+M +S I+P+E T++S+L+ CA+
Sbjct: 318 FEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCAS 377

Query: 361 LGALELGEWVKTY-------IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +GAL  G+ +  Y       + KN   ++  V N LIDMY KC  V+ A+ +F  +  K+
Sbjct: 378 VGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKE 437

Query: 414 K--FTWTAMIVGLAINGHGDKSLDMFSQMLR--ASIIPDEVTYVGVLSACTHTGMVDEGR 469
           +   TWT MI G + +G  +K+L++ S+M        P+  T    L AC     +  G+
Sbjct: 438 RDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGK 497

Query: 470 EYFA-DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           +  A  +  Q    P      C++D+  + G +++A  V  NM M  N + W +L+    
Sbjct: 498 QIHAYALRNQQNAVPLFVS-NCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYG 555

Query: 529 VHRDAEMA 536
           +H   E A
Sbjct: 556 MHGYGEEA 563



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 139/326 (42%), Gaps = 27/326 (8%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIK--LGLLTNPTVQNKLVTFC 58
           +S I P      E  LIS +  C S+  L   K+IH   IK  + L  N      +V   
Sbjct: 358 SSGIKP-----NEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI-- 410

Query: 59  CSEKGDMKYACK-------VFRKI-PRP-SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS 109
            ++  DM   CK       +F  + P+   V  W  MI GYS+       + +  +M + 
Sbjct: 411 -NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469

Query: 110 D--VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS-SVFVQNALISTYCLCGEV 166
           D   RP+ +T    L       A+  GK++H + L+   ++  +FV N LI  Y  CG +
Sbjct: 470 DCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
             AR +FD     + VTW ++ +GY      +E   +F EM R G     VT+++VL AC
Sbjct: 530 SDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYAC 589

Query: 227 AKLKDLDVGKRAHRYVKEC-KIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVIS 284
           +    +D G      +K    + P       L D+    G +  AL +   +      + 
Sbjct: 590 SHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVV 649

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPE 310
           W A ++     G+V++     +++ E
Sbjct: 650 WVAFLSCCRIHGKVELGEYAAEKITE 675


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/584 (39%), Positives = 364/584 (62%), Gaps = 1/584 (0%)

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  +++ G     F+   L+ +   C  +D A  IF  ++  +V  + A+  G+     
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
           + +  +L+  M    +LP +  +  +L AC     L  G+  H    +  +  N ++   
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 187

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           + ++Y  CGE+G A  +F  +  +DV++ T +++ Y ++G V+ A   F ++  +D V W
Sbjct: 188 IMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCW 246

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           TAMIDG++R      AL  FR MQ  N+RP+EFTIV +L+AC+ LGALE+G WV +Y+ K
Sbjct: 247 TAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
            +++ ++FVGNALI+MY +CG +++AQ VF EM  +D  T+  MI GL++NG   +++++
Sbjct: 307 FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIEL 366

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F  M+   + P  VT+VGVL+AC+H G+VD G + F  MT  +G+EP   HYGCMVDLLG
Sbjct: 367 FRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLG 426

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R G L EA ++I+ M M P+ I+ G LL AC++H++ E+ E  AK + +    +   YVL
Sbjct: 427 RVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVL 486

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L ++YA+  +W    ++R  + + G++K PGCS IE+N  +HEF+ GD  HP+ + IY K
Sbjct: 487 LSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEK 546

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L+E+   L+  GY P+   V  D+ + +KE A+  HSE+LA+ +GLIS+ P   IR++KN
Sbjct: 547 LEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKN 606

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C DCH   KL++ +  R+V+VRD+ RFH+F++G+CSC DYW
Sbjct: 607 LRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 225/479 (46%), Gaps = 80/479 (16%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           SNS+     +L Q+  +IS ++  + ++Q+  IH+Q I+ G   +P +  +L+   CS+ 
Sbjct: 37  SNSNPKSLKSLDQKQ-IISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLR-SCSKC 94

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
             + YA ++F+    P+V L+  +I G+    ++ + + +Y  ML   + PDNY    +L
Sbjct: 95  HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASIL 154

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-------- 174
           K     +A+  G+E+H   LK G  S+  V+  ++  Y  CGE+  AR +F+        
Sbjct: 155 KACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVA 214

Query: 175 -----VSYKD-----------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
                 SY D                 D V W AM  G+ R ++ +   + F  M+ + V
Sbjct: 215 STVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENV 274

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P   TIV VLSAC++L  L++G+  H Y+++ +I  NL + NAL +MY+ CG +  A  
Sbjct: 275 RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQT 334

Query: 273 IFGNIKNKDVISWTAIVTGY----------------INR-------------------GQ 297
           +F  +K++DVI++  +++G                 I R                   G 
Sbjct: 335 VFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGL 394

Query: 298 VDMARQYFDQMPERDYVL------WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           VD   + F  M  RDY +      +  M+D   RV R  EA  L R M+ +   PD   +
Sbjct: 395 VDFGFKIFHSMT-RDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMT---PDHIML 450

Query: 352 VSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
            ++L+AC     LELGE V K   D+ +  +  +V   L  +Y   G  ++A +V  +M
Sbjct: 451 GTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYV--LLSHVYASSGKWKEAAQVRAKM 507



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 169/374 (45%), Gaps = 37/374 (9%)

Query: 11  STLTQETPLISPIETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDM 65
           S L     + S ++ C S   + + +++HS+ +KLGL +N  V+ +++     C E GD 
Sbjct: 142 SILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDA 201

Query: 66  KY---------------------------ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKN 98
           +                            A  VF ++ R     W  MI G+ R +    
Sbjct: 202 RRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNR 261

Query: 99  GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
            +  +  M   +VRP+ +T   +L   ++  A+E G+ +H ++ KF  + ++FV NALI+
Sbjct: 262 ALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALIN 321

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y  CG +D A+ +FD     DV+T+N M SG     +  +  +LF  M  + + PT+VT
Sbjct: 322 MYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVT 381

Query: 219 IVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
            V VL+AC+    +D G K  H   ++  + P +     + D+    G +  A ++   +
Sbjct: 382 FVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM 441

Query: 278 K-NKDVISWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREAL 333
           K   D I    +++       +++  Q    + +R   D   +  +   Y    +++EA 
Sbjct: 442 KMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAA 501

Query: 334 TLFREMQTSNIRPD 347
            +  +M+ + ++ +
Sbjct: 502 QVRAKMKEAGMQKE 515


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/588 (40%), Positives = 353/588 (60%), Gaps = 35/588 (5%)

Query: 135  KELHCHVLKFG--FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            K+ H  +  +G  +DS +  + A++  Y     +D A  +F+         WN M  G+ 
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIM--YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA 794

Query: 193  RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
               +F  + +L+ +M  KG+ P        L +CA L DL  GK  H+++  C    +L 
Sbjct: 795  TDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLF 854

Query: 253  LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
            ++ AL DMYA CG+                               ++ AR  FD+M  RD
Sbjct: 855  VDAALVDMYAKCGD-------------------------------IEAARLVFDKMAVRD 883

Query: 313  YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
             V WT+MI GY       E L  F  M++S + P+  +I+S+L AC NLGAL  GEW  +
Sbjct: 884  LVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHS 943

Query: 373  YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            Y+ +   + DI V  A++DMY KCG ++ A+ +F E   KD   W+AMI    I+GHG K
Sbjct: 944  YVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRK 1003

Query: 433  SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
            ++D+F QM++A + P  VT+  VLSAC+H+G+++EG+ YF  MT +  I    ++Y CMV
Sbjct: 1004 AIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMV 1063

Query: 493  DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
            DLLGRAG L+EA+++I+NMP++P++ +WG+LLGACR+H + ++AE  A  +  LDP +  
Sbjct: 1064 DLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAG 1123

Query: 553  VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
             +VLL NIYAA +RW+   ++R+M+  RG  K  G S++E +  VH+F  GD+SHPQ ++
Sbjct: 1124 YHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEK 1183

Query: 613  IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
            +Y KL+E+ + +K +GY+P    V  D+ EE KE A+  HSE+LA+AFGLI++ PG T+R
Sbjct: 1184 LYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLR 1243

Query: 673  IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            I KNLR+C DCH   KL+S + +R ++VRD  RFH F+ G CSC DYW
Sbjct: 1244 ITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/730 (32%), Positives = 371/730 (50%), Gaps = 90/730 (12%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTN---PTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L+   + C +   + Q+HSQ  K G+L +    T  N L   C S    ++ A KVF + 
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCAS----LQAARKVFDET 62

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGV-LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           P P+V LWN+ ++ Y R    +  + L +L +  +   PDN+T P  LK       +E G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 135 KELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           K +H    K     S +FV +AL+  Y  CG++  A  +F+   + D V W +M +GY++
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 194 VKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
               +E   LF +M     V+   VT+V V+SACA+L ++  G   H  V   +   +L 
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER- 311
           L N+L ++YA  G    A  +F  +  KDVISW+ ++  Y N    + A   F +M E+ 
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 302

Query: 312 --------------------------------------DYVLWTAMIDGYLRVNRFREAL 333
                                                 D+ + TA+ID Y++ +   EA+
Sbjct: 303 FEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAV 362

Query: 334 TL-------------------------------FREMQTSNIRPDEFTIVSILTACANLG 362
            L                               FR M +  I+PD   +V IL A + LG
Sbjct: 363 DLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELG 422

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
             +    +  Y+ ++   +++FVG +LI++Y KCG +  A ++F+ M+ +D   W++MI 
Sbjct: 423 IFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIA 482

Query: 423 GLAINGHGDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
              I+G G ++L++F QM++ S + P+ VT++ +LSAC+H G+V+EG + F  M   + +
Sbjct: 483 AYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQL 542

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
            P+  H+G MVDLLGR G L +A+++I  MP+     VWGALLGACR+H + EM E AAK
Sbjct: 543 RPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAK 602

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
            +  LDP +   Y+LL NIYA   +WDN  ELR  I +RG+KK  G SM+E+ G VH F+
Sbjct: 603 NLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFL 662

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA-- 659
           A D+ HP +++IY  L ++ + +    Y+PD+  +  D G      AV Q  +++     
Sbjct: 663 ASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHDTG------AVLQFWQRIKATES 716

Query: 660 -FGLISSGPG 668
            +  I S PG
Sbjct: 717 KYKTIGSAPG 726



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 186/402 (46%), Gaps = 34/402 (8%)

Query: 32   LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
            LK+ H++    GL  +  +  K      S    +  A  VF  IP P   LWN MI+G++
Sbjct: 736  LKKTHAKIFAYGLQYDSRILTKFAIMYVSFN-RIDAASIVFEDIPNPCSFLWNVMIRGFA 794

Query: 92   RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
                  + + +Y  M++  ++PD + FPF LK       ++ GK +H H++  G  + +F
Sbjct: 795  TDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLF 854

Query: 152  VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
            V  AL+  Y  CG+++ AR +FD     D+V+W +M SGY       ET   F  M   G
Sbjct: 855  VDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG 914

Query: 212  VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
            V+P  V+I+ VL AC  L  L  G+  H YV +     ++++  A+ DMY+ CG +  A 
Sbjct: 915  VIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLAR 974

Query: 272  EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
             +F     KD++ W+A++  Y   G                                 R+
Sbjct: 975  CLFDETAGKDLVCWSAMIASYGIHGHG-------------------------------RK 1003

Query: 332  ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALI 390
            A+ LF +M  + +RP   T   +L+AC++ G LE G+ + +   ++  +   +     ++
Sbjct: 1004 AIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMV 1063

Query: 391  DMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
            D+  + G + +A  +   M +  D   W +++    I+ + D
Sbjct: 1064 DLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLD 1105


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 255/696 (36%), Positives = 404/696 (58%), Gaps = 34/696 (4%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           ++ C S+   K++H    K+G   +  V   LV    S  G +  A KVF  +P   V  
Sbjct: 131 LKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLY-SRYGVLDVAHKVFVDMPVKDVGS 189

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           WN MI G+ + + +  G L  L+ +K + V+ D  T   +L    +   V  G  +H HV
Sbjct: 190 WNAMISGFCQ-NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           LK G DS VFV NALI+ Y   G +  A+ +FD     D+V+WN++ + Y++        
Sbjct: 249 LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTAL 308

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
           + F  M+  G+ P  +T+V + S  ++L D    +R  R +                   
Sbjct: 309 RFFKGMQLGGIRPDLLTVVSLTSIFSQLSD----QRISRSI------------------- 345

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
                +GF +       +KDV+   A+V  Y   G ++ A   FDQ+P +D + W  ++ 
Sbjct: 346 -----LGFVIR--REWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVT 398

Query: 322 GYLRVNRFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
           GY +     EA+  +  M+   +  P++ T VSI+ A +++GAL+ G  +   + KN + 
Sbjct: 399 GYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLY 458

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D+FV   LID+Y KCG +E A  +F E+ R     W A+I  L I+G G+++L +F  M
Sbjct: 459 LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDM 518

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           L   +  D +T+V +LSAC+H+G+VDEG++ F  M  ++GI+P+  HYGCMVDLLGRAG+
Sbjct: 519 LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGY 578

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L +A E+++NMP++P++ +WGALL AC+++ +AE+  +A+ ++LE+D +N   YVLL NI
Sbjct: 579 LEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNI 638

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YA   +W+   ++R +  DRG++KTPG S + +      F  G+++HP+  EIY +L  +
Sbjct: 639 YANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVL 698

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
           ++ +K +GY+PD S V+ D+ E++KE+ +  HSE+LA+AFG+IS+ P   IRI KNLR+C
Sbjct: 699 SAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVC 758

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
            DCH   K +S + +RE++VRD  RFHHFK G CSC
Sbjct: 759 GDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 179/404 (44%), Gaps = 39/404 (9%)

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
           F   + V   K+LH  +L FG   ++ +   LI+ Y   G++ ++R  FD  +K ++ +W
Sbjct: 29  FNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSW 88

Query: 185 NAMFSGYKRVKQFDET----RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           N++ S Y R  ++ E      +LF       + P   T   +L AC  L D   GK+ H 
Sbjct: 89  NSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVH- 144

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
               C +                  +MGF           DV    ++V  Y   G +D+
Sbjct: 145 ----CCVF-----------------KMGF---------EDDVFVAASLVHLYSRYGVLDV 174

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           A + F  MP +D   W AMI G+ +      AL +   M+   ++ D  T+ SIL  CA 
Sbjct: 175 AHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQ 234

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
              +  G  +  ++ K+ + +D+FV NALI+MY K G ++ AQ VF +M  +D  +W ++
Sbjct: 235 SDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSI 294

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I     N     +L  F  M    I PD +T V + S  +        R     +  +  
Sbjct: 295 IAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW 354

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           ++ +      +V++  + G++N A  V   +P K ++I W  L+
Sbjct: 355 LDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK-DTISWNTLV 397


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/585 (40%), Positives = 350/585 (59%), Gaps = 47/585 (8%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCG--EVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H  +L+ G     F  + LI+   L     +D A+ +FD     ++ TWN +   Y 
Sbjct: 52  KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYA 111

Query: 193 RVKQFDETRKLFGEMERKGV-LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
                 ++  +F  M  +    P   T   ++ A ++L++L  GK  H  V +  +  ++
Sbjct: 112 SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDV 171

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + N+L   YA CGE+G    +F N                                P R
Sbjct: 172 FILNSLIHFYAKCGELGLGYRVFVN-------------------------------XPRR 200

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D V W +MI  +++     EAL LF+EM+T N++P+  T+V +L+ACA     E G WV 
Sbjct: 201 DVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVH 260

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG-------- 423
           +YI++N++   + + NA++DMY KCG VE A+R+F +M  KD  +WT M+VG        
Sbjct: 261 SYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYD 320

Query: 424 ----LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
               LA++GHG  ++ +FS+M    + P+ VT+  +L AC+H G+V+EGR +F  M + +
Sbjct: 321 AAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVY 380

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           G+ P   HY CMVD+LGRAG L EA+E+I+ MPM P + VWGALLGAC +H +  +AE A
Sbjct: 381 GVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQA 440

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
             Q++EL+P N   YVLL NIYA   +WD    LR+++ D G+KK PGCS IE++G+VHE
Sbjct: 441 CSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHE 500

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHSEKLAM 658
           F+ GD SHP  K+IY KLDE+ + L+ +GY+P+ S +   V EED KE+A++ HSEKLA+
Sbjct: 501 FLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAI 560

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDK 703
           AFGLIS+G    IRIVKNLR+C DCH +AKLVS +YDRE+++RD+
Sbjct: 561 AFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDR 605



 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 222/417 (53%), Gaps = 29/417 (6%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIP 76
           P +S I+ C    QLKQIH+Q ++ GL  +P   ++L+T    S    + YA +VF +IP
Sbjct: 37  PTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIP 96

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
            P++  WNT+I+ Y+   +    +LI+L ML +S   PD +TFPFL+K  +    +  GK
Sbjct: 97  HPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGK 156

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
             H  V+K    S VF+ N+LI  Y  CGE+ +   +F    + DVV+WN+M + + +  
Sbjct: 157 AFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGG 216

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
             +E  +LF EME + V P  +T+V VLSACAK  D + G+  H Y++  +I  +L L N
Sbjct: 217 CPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSN 276

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           A+ DMY  CG +  A  +F  +  KD++SWT ++ GY   G+ D A+             
Sbjct: 277 AMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQ------------- 323

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
                 G       ++A+ LF +MQ   ++P+  T  +IL AC+++G +E G   +T+ +
Sbjct: 324 ------GLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEG---RTFFN 374

Query: 376 KNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
           + ++   +  G      ++D+  + G +E+A  +  +M +      W A++    I+
Sbjct: 375 QMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIH 431


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 268/761 (35%), Positives = 415/761 (54%), Gaps = 98/761 (12%)

Query: 26  CESMH--QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLW 83
           CE+ +  + K +HS  IK        + N L++   ++ G + YACKVF ++P P++  W
Sbjct: 20  CETHNFTKAKNLHSHIIKTLPYPETFLLNNLIS-SYAKLGSIPYACKVFDQMPHPNLYSW 78

Query: 84  NTMIKGYSRID------------SHKNGV-------------LIYLD------MLKSD-- 110
           NT++  YS++               ++GV             LIY        MLK+D  
Sbjct: 79  NTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGS 138

Query: 111 VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170
              +  TF  LL   ++   V+ G+++H HV+KFGF S VFV + L+  Y   G +  AR
Sbjct: 139 FNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCAR 198

Query: 171 GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSV------------ 217
            +FD   + +VV +N +  G  R  + +++++LF EM ER  +  TS+            
Sbjct: 199 KVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRD 258

Query: 218 ------------------TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
                             T   VL+AC  +  L  GK+ H Y+       N+ + +AL D
Sbjct: 259 AIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVD 318

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY  C           NIK+ + +                     F +M  ++ V WTAM
Sbjct: 319 MYCKCK----------NIKSAEAV---------------------FKKMTCKNVVSWTAM 347

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           + GY +     EA+  F +MQ   I PD+FT+ S++++CANL +LE G         + +
Sbjct: 348 LVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGL 407

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
            + I V NAL+ +Y KCG +E + R+F E+  KD+ TWTA++ G A  G  ++++ +F  
Sbjct: 408 ISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFES 467

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           ML   + PD+VT++GVLSAC+  G+V++G + F  M  +HGI P + HY CM+DL  RAG
Sbjct: 468 MLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAG 527

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
            + EA   I  MP  P++I W  LL +CR + + ++ + AA+ ++ELDP N A YVLL +
Sbjct: 528 RIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSS 587

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           +YAA  +W+    LR+ + D+G++K PGCS I+    VH F A DKS+P + +IY +L++
Sbjct: 588 VYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEK 647

Query: 620 MTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
           +   +   GY+PD++ V  DVG+ +K + +  HSEKLA+AFGL+   PG+ IR+VKNLR+
Sbjct: 648 LNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRV 707

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C DCH   K +S + +RE++VRD  RFH FK G+CSC D+W
Sbjct: 708 CSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 150/336 (44%), Gaps = 35/336 (10%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L  C +  +    K  H ++ +    P   L N L   YA  G + +A ++F  + + +
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN 74

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-- 339
           + SW  I++ Y   G+V      FD MP RD V W ++I GY       +++  +  M  
Sbjct: 75  LYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLK 134

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK---- 395
              +   +  T  ++L   +  G ++LG  +  ++ K    + +FVG+ L+DMY K    
Sbjct: 135 NDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMI 194

Query: 396 ---------------------------CGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
                                      CG VE ++R+F EM  +D  +WT+MI G   NG
Sbjct: 195 SCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNG 254

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
               ++D+F +M   ++  D+ T+  VL+AC     + EG++  A   I+   + N    
Sbjct: 255 LDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHA-YIIRTDYKDNIFVA 313

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
             +VD+  +  ++  A  V K M  K N + W A+L
Sbjct: 314 SALVDMYCKCKNIKSAEAVFKKMTCK-NVVSWTAML 348



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 38/251 (15%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L S I +C ++  L+   Q H++ +  GL++  TV N LVT    + G ++ + ++F +I
Sbjct: 379 LGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTL-YGKCGSIEDSHRLFNEI 437

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  W  ++ GY++       + ++  ML   ++PD  TF  +L   +R   VE G 
Sbjct: 438 SFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGN 497

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++        F+S +                    GI  V  +D    +  M   + R  
Sbjct: 498 QI--------FESMI-----------------NEHGI--VPIQDH---YTCMIDLFSRAG 527

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           + +E R    +M      P +++   +LS+C    ++D+GK A  ++ E     N     
Sbjct: 528 RIEEARNFINKMPFS---PDAISWATLLSSCRFYGNMDIGKWAAEFLMELD-PHNTASYV 583

Query: 256 ALTDMYAACGE 266
            L+ +YAA G+
Sbjct: 584 LLSSVYAAKGK 594


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/566 (41%), Positives = 355/566 (62%), Gaps = 5/566 (0%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV--SYK 178
           LL+ F     +   +++H  ++K     S+     +            A+ IF+     K
Sbjct: 34  LLRNFNSPFEL---RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQK 90

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            +   WN+            +   LF  + +  V P + T   VL AC  L DL  G+  
Sbjct: 91  PETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRIL 150

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H  V++     NL L+N +  +YA+CGEMG A  +F  +  +DV++W  ++   I +G  
Sbjct: 151 HGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDH 210

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
           + A   F +MPER+   WT+MI GY++  + +EA+ LF +M+ + ++ +E T+V++L AC
Sbjct: 211 EGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAAC 270

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A+LGAL+LG  +  Y +++  K ++ + N LIDMY KCG +E+A +VF EM  +   +W+
Sbjct: 271 ADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWS 330

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           AMI GLA++G  +++L +FS M +  I P+ VT++G+L AC+H G++ EGR +FA MT  
Sbjct: 331 AMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD 390

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           +GI P   HYGCMVDLL RAG L+EA E I NMPMKPN +VWGALLGACRVH++ EMAE 
Sbjct: 391 YGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEE 450

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           A K +LELDP N+  YV+L NIYA   RW++   +R+ + DR +KKTPG S I ++GVVH
Sbjct: 451 AIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVH 510

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
           EFVAG++SHP T++I+ + +E+  +++  GY+P+ S V LD+ E +K + V +HSEKLA+
Sbjct: 511 EFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLAL 570

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCH 684
            FGL+++     IRI+KNLR+C DCH
Sbjct: 571 VFGLMNTPAETPIRIMKNLRICEDCH 596



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 132/276 (47%), Gaps = 9/276 (3%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           ++GD + A  +F ++P  +V  W +MI GY +    K  + ++  M ++ V+ +  T   
Sbjct: 206 KQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVA 265

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +L       A++ G  +H +  + GF  +V + N LI  Y  CG ++ A  +F+   +  
Sbjct: 266 VLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERT 325

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH- 239
           VV+W+AM  G     + +E  +LF +M + G+ P  VT + +L AC+ +  +  G+R   
Sbjct: 326 VVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFA 385

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQV 298
              ++  I+P +     + D+ +  G +  A E   N+  K + + W A++        V
Sbjct: 386 SMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNV 445

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRV--NRFREA 332
           +MA +    + E D      + DGY  V  N + EA
Sbjct: 446 EMAEEAIKHLLELD-----PLNDGYYVVLSNIYAEA 476


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/602 (41%), Positives = 364/602 (60%), Gaps = 18/602 (2%)

Query: 134 GKELHCHVLKFGFDSS--VFVQNALISTYCLCGEVDMARGIFD---VSYKDDVVTWNAMF 188
           GKELH  +   G   +   ++ NAL   Y   GE+  A+ +FD   +S KD+V  W  + 
Sbjct: 25  GKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNV-DWTTLL 83

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           S + R      + KLF EM RK V    V++V +   CAKL+DL   ++ H    +  ++
Sbjct: 84  SSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVL 143

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            ++ + NAL DMY  CG +     IF  ++ K V+SWT ++   +    ++  R+ F +M
Sbjct: 144 TSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEM 203

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF-TIVSILTACANLGALELG 367
           PER+ V WT M+ GYL     RE L L  EM         F T+ S+L+ACA  G L +G
Sbjct: 204 PERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVG 263

Query: 368 EWVKTYIDKNKVK-------NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
            WV  Y  K ++        +D+ VG AL+DMY KCG+++ +  VFR M +++  TW A+
Sbjct: 264 RWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNAL 323

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
             GLA++G G   +DMF QM+R  + PD++T+  VLSAC+H+G+VDEG   F  +   +G
Sbjct: 324 FSGLAMHGKGRMVIDMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRF-YG 381

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           +EP   HY CMVDLLGRAG + EA  +++ MP+ PN +V G+LLG+C VH   E+AE   
Sbjct: 382 LEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIK 441

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
           ++++++ P N    +L+ N+Y A  R D    LR  +  RGI+K PG S I +N  VH F
Sbjct: 442 RELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRF 501

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE-VFLDVGE-EDKERAVYQHSEKLAM 658
            +GD+SHP+TKEIYLKL+E+   ++  GY+PD+S  V    G+ E+KE+A+  HSEKLA+
Sbjct: 502 SSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAV 561

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
            FGL+ + P   + + KNLR+C DCH   K+VS VYDRE+I+RD+ RFH FK GSCSC D
Sbjct: 562 CFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSD 621

Query: 719 YW 720
           YW
Sbjct: 622 YW 623



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/491 (23%), Positives = 215/491 (43%), Gaps = 93/491 (18%)

Query: 33  KQIHSQTIKLGLLTNPT--VQNKLVTFCCSEKGDMKYACKVFRKIP--RPSVCLWNTMIK 88
           K++H+     GL   P   + N L  F  S  G+M  A K+F +IP        W T++ 
Sbjct: 26  KELHAVLTTSGLKKAPRSYLSNALFQFYAS-SGEMVTAQKLFDEIPLSEKDNVDWTTLLS 84

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
            +SR     N + ++++M +  V  D+ +   L     +   + F ++ H   +K G  +
Sbjct: 85  SFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLT 144

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM- 207
           SV V NAL+  Y  CG V   + IF+   +  VV+W  +     + +  +  R++F EM 
Sbjct: 145 SVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMP 204

Query: 208 ERKGVLPTS-------------------------------VTIVLVLSACAKLKDLDVGK 236
           ER  V  T                                VT+  +LSACA+  +L VG+
Sbjct: 205 ERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGR 264

Query: 237 RAHRYVKECKIV-------PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289
             H Y  + +++        ++++  AL DMYA CG +  ++ +F  ++ ++V++W A+ 
Sbjct: 265 WVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALF 324

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
           +G    G+  M    F QM                     RE            ++PD+ 
Sbjct: 325 SGLAMHGKGRMVIDMFPQM--------------------IRE------------VKPDDL 352

Query: 350 TIVSILTACANLGALELGEW-----VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           T  ++L+AC++ G ++ G W     ++ Y  + KV +       ++D+  + G +E+A+ 
Sbjct: 353 TFTAVLSACSHSGIVDEG-WRCFHSLRFYGLEPKVDHY----ACMVDLLGRAGLIEEAEI 407

Query: 405 VFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
           + REM +  ++    +++   +++G  + +  +  ++++ S  P    Y  ++S      
Sbjct: 408 LMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMS--PGNTEYQILMS----NM 461

Query: 464 MVDEGREYFAD 474
            V EGR   AD
Sbjct: 462 YVAEGRSDIAD 472


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/621 (40%), Positives = 359/621 (57%), Gaps = 9/621 (1%)

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
           +D L    +P    +  L+    R   +E GK +H H     F   + + N LI  Y  C
Sbjct: 52  VDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKC 111

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G +  A+ +FD   + D+ +WN M SGY  V + ++ RKLF EM  +     +  I   +
Sbjct: 112 GSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYV 171

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVP-NLILENALTDMYAACGEMGFALEIFGNIKNK-- 280
           S    ++ LD+     R ++E +    N+   ++     AA   +    EI G +     
Sbjct: 172 SQGWYMEALDL----FRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGL 227

Query: 281 --DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
             D + WTA++  Y   G ++ AR  FDQM ++D V WT MI       R +E  +LFR+
Sbjct: 228 ELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRD 287

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           +  S +RP+E+T   +L ACA+L A ++G+ V  Y+ +       F  +AL+ +Y KCG+
Sbjct: 288 LMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGN 347

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
            E A+RVF +M R D  +WT++IVG A NG  D +L  F  +LR+   PDE+T+VGVLSA
Sbjct: 348 TETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSA 407

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           CTH G+VD G EYF  +  +HG+     HY C++DLL R+G   EA  +I NMPMKP+  
Sbjct: 408 CTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKF 467

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           +W +LLG CR+H + E+AE AAK + EL+P+N A Y+ L NIYA    W    ++R  + 
Sbjct: 468 LWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMD 527

Query: 579 DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL 638
           +RGI K PG S IE+   VH F+ GD SHP+  +I+  L E++  +K  GY+ D + V  
Sbjct: 528 NRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLH 587

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
           DV EE KE+ ++ HSEKLA+AFG+IS+ PG  I++ KNLR CVDCH   K +S +  R++
Sbjct: 588 DVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKI 647

Query: 699 IVRDKTRFHHFKHGSCSCKDY 719
           IVRD  RFH F  GSCSCKDY
Sbjct: 648 IVRDSNRFHCFVDGSCSCKDY 668



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/487 (24%), Positives = 214/487 (43%), Gaps = 87/487 (17%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K++H+ T     +    + N+L+    ++ G +  A  +F +IP+  +C WNTMI GY+ 
Sbjct: 83  KRVHAHTKASNFIPGIVISNRLIHMY-AKCGSLVDAQMLFDEIPQKDLCSWNTMISGYAN 141

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD------------------------ 128
           +   +    ++ +M       DN+++  ++ G+                           
Sbjct: 142 VGRIEQARKLFDEMPHR----DNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMF 197

Query: 129 ------------IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
                        ++  GKE+H ++++ G +    V  AL+  Y  CG ++ ARGIFD  
Sbjct: 198 TLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQM 257

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRK-----LFGEMERKGVLPTSVTIVLVLSACAKLKD 231
              D+V+W  M       + F++ RK     LF ++   GV P   T   VL+ACA L  
Sbjct: 258 ADKDIVSWTTMIH-----RCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAA 312

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
             +GK  H Y+      P     +AL  +Y+ CG    A  +F  +   D++SWT+++ G
Sbjct: 313 EQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVG 372

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           Y   GQ DMA Q+F+                           +L R    S  +PDE T 
Sbjct: 373 YAQNGQPDMALQFFE---------------------------SLLR----SGTKPDEITF 401

Query: 352 VSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM- 409
           V +L+AC + G +++G E+  +  +K+ + +       +ID+  + G  ++A+ +   M 
Sbjct: 402 VGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMP 461

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEG 468
           ++ DKF W +++ G  I  HG+  L   +      + P+   TY+ + +   + G+  E 
Sbjct: 462 MKPDKFLWASLLGGCRI--HGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEE 519

Query: 469 REYFADM 475
            +   DM
Sbjct: 520 TKVRNDM 526


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/643 (37%), Positives = 371/643 (57%), Gaps = 41/643 (6%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WNT ++  ++       + +Y  ML+   RP+ +TFPF LK          G + H  + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT--WNAMFSGYKRVKQFDET 200
           K G     FVQ  LIS YC    VD AR +F+ ++    +T  +NA+ SGY    +  + 
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             LF +M  +GV   SVT++ ++ AC    +L++G   H                     
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLH--------------------- 166

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
              C  + +  +        DV      +T Y+  G V+ A++ FD+MP +  + W AM+
Sbjct: 167 ---CSTLKYGFD-------SDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMV 216

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            GY +       L L+R M  + + PD  T+V +L++CANLGA  +G  V+  +  +   
Sbjct: 217 SGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFT 276

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
           ++ F+ NALI+MY +CG++ KAQ VF  M  +   +WTA+I G  ++GHG+ ++ +F +M
Sbjct: 277 SNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM 336

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           +R+ I PD   +V VLSAC+H G+ D+G EYF  M   + +EP   HY CMVDLLGRAG 
Sbjct: 337 IRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGR 396

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L EA  +I++MP+KP+  VWGALLGAC++H++ E+AE+A ++++EL+P+N   YVLL NI
Sbjct: 397 LKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNI 456

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           Y+  N       +R M+ ++ +KK PGCS +E+ G VH F+ GD++H Q+ EIY  L+E+
Sbjct: 457 YSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL 516

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERA---VYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
            + +     M +  +   D  EE  +     V  HSEKLA+AFGL+++  G  + I+KNL
Sbjct: 517 EAII-----MQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNL 571

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+C DCH   K+VS +  R++ VRD TRFHHF++GSCSCKDYW
Sbjct: 572 RICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/433 (29%), Positives = 205/433 (47%), Gaps = 48/433 (11%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM-KYACKVF------RKIPRPSVCLWNTM 86
           Q H Q  K+G +  P VQ  L++  C  KG +   A KVF      RK+   +VC +N +
Sbjct: 61  QFHGQITKVGCVFEPFVQTGLISMYC--KGSLVDNARKVFEENFHSRKL---TVC-YNAL 114

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           + GY       + VL++  M +  V  ++ T   L+      I +E G  LHC  LK+GF
Sbjct: 115 VSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGF 174

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
           DS V V N  I+ Y  CG V+ A+ +FD      +++WNAM SGY +        +L+  
Sbjct: 175 DSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRN 234

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M+  GV P  VT+V VLS+CA L    VG      ++      N  L NAL +MYA CG 
Sbjct: 235 MDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGN 294

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +  A  +F  +  + ++SWTAI+ GY   G  ++A Q                       
Sbjct: 295 LTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQ----------------------- 331

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFV 385
                   LF+EM  S I PD    V +L+AC++ G  + G E+ K      +++     
Sbjct: 332 --------LFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEH 383

Query: 386 GNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
            + ++D+  + G +++AQ +   M ++ D   W A++    I+ + + +   F +++   
Sbjct: 384 YSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE-- 441

Query: 445 IIPDEVTYVGVLS 457
           + P+ + Y  +LS
Sbjct: 442 LEPENIGYYVLLS 454



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 153/340 (45%), Gaps = 15/340 (4%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L+  I  C S   L+    +H  T+K G  ++ +V N  +T    + G + YA K+F ++
Sbjct: 146 LLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMY-MKCGSVNYAQKLFDEM 204

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P   +  WN M+ GY++     N + +Y +M  + V PD  T   +L       A   G 
Sbjct: 205 PVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGH 264

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           E+   +   GF S+ F+ NALI+ Y  CG +  A+ +FD   +  +V+W A+  GY    
Sbjct: 265 EVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHG 324

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILE 254
             +   +LF EM R G+ P     V VLSAC+     D G    + +K   ++ P     
Sbjct: 325 HGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHY 384

Query: 255 NALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERD- 312
           + + D+    G +  A  +  ++  K D   W A++        V++A   F+++ E + 
Sbjct: 385 SCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEP 444

Query: 313 -----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
                YVL + +   Y   N  +  L +   M+   ++ D
Sbjct: 445 ENIGYYVLLSNI---YSNANNSKGVLRIRIMMKEKKLKKD 481


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/726 (34%), Positives = 403/726 (55%), Gaps = 29/726 (3%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPT--VQNKLVTFCCS----EK 62
           P S+ T  + L++     E +   ++ H+  +K G L        N L++        + 
Sbjct: 159 PLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDD 218

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
             M +        P   V  WNTM+    +       + +  DM+   VRPD  TF   L
Sbjct: 219 AQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASAL 278

Query: 123 KGFTRDIAVEFGKELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKD 179
              ++   +  G+E+H +VLK     ++ FV +AL+  Y     V +AR +FD+      
Sbjct: 279 PACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHR 338

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            +  WNAM  GY +    +E  +LF  ME + GV+P+  TI  VL ACA+ +     +  
Sbjct: 339 QLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAV 398

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H YV +  +  N  ++NAL D+YA  G+M  A  IF  I+ +DV+SW  ++TG + +G +
Sbjct: 399 HGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHI 458

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL--FREMQTSNIRPDEFTIVSILT 356
             A Q   +M ++                RF +A T           + P+  T++++L 
Sbjct: 459 HDAFQLVREMQQQ---------------GRFTDATTEDGIAGTDEEPVVPNNVTLMTLLP 503

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
            CA L A   G+ +  Y  ++ + +DI VG+AL+DMY KCG +  ++ VF  + +++  T
Sbjct: 504 GCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVIT 563

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           W  +I+   ++G GD+++ +F +M+ ++   P+EVT++  L+AC+H+GMVD G E F  M
Sbjct: 564 WNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSM 623

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRVHRDAE 534
              HG++P    + C VD+LGRAG L+EA  +I +M P +     W + LGACR+HR+  
Sbjct: 624 KRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVP 683

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           + E+AA+++ +L+PD  + YVLLCNIY+A   W+   E+R  +  RG+ K PGCS IE++
Sbjct: 684 LGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELD 743

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
           GV+H F+AG+ +HP++  ++  +D +   ++  GY PD S V  D+ E +K   +  HSE
Sbjct: 744 GVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSE 803

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           KLA+AFGL+ + PG TIR+ KNLR+C DCH  AK +S +  RE+++RD  RFHHF  G+C
Sbjct: 804 KLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGAC 863

Query: 715 SCKDYW 720
           SC DYW
Sbjct: 864 SCGDYW 869



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 181/398 (45%), Gaps = 41/398 (10%)

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           L  GF  +V   NAL++ Y  CG++  A  +F+     D VT+N++ +     +++    
Sbjct: 90  LLHGFTPAV--ANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPAL 147

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKL-KDLDVGKRAHRYVKECKIVPN--LILENALT 258
               +M  +G   +S T+V VL AC+ L +DL +G+ AH +  +   +        NAL 
Sbjct: 148 DALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALL 207

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
            MYA  G +  A  +FG++   D                           P    V W  
Sbjct: 208 SMYARLGLVDDAQMLFGSVDTTDS--------------------------PGGGVVTWNT 241

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           M+   ++  R  EA+ +  +M    +RPD  T  S L AC+ L  L LG  +  Y+ K+ 
Sbjct: 242 MVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDS 301

Query: 379 -VKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSL 434
            +  + FV +AL+DMY     V  A+RVF +M+    +    W AM+ G A  G  +++L
Sbjct: 302 DLAANSFVASALVDMYASHERVGVARRVF-DMVPGGHRQLGLWNAMVCGYAQAGMDEEAL 360

Query: 435 DMFSQM-LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           ++F++M   A ++P E T  GVL AC  +     G+E      ++ G+  N      ++D
Sbjct: 361 ELFARMEAEAGVVPSETTIAGVLPACARSETF-AGKEAVHGYVLKRGMADNPFVQNALMD 419

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIV-WGALLGACRVH 530
           L  R G +  A  +     ++P  +V W  L+  C V 
Sbjct: 420 LYARLGDMEAARWIFA--AIEPRDVVSWNTLITGCVVQ 455



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 136/313 (43%), Gaps = 15/313 (4%)

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
           A++T Y   G +  A   F+ MP RD V + ++I       R+  AL   R+M       
Sbjct: 101 ALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPL 160

Query: 347 DEFTIVSILTACANLGA-LELGEWVKTYIDKNKV--KNDIFVGNALIDMYCKCGDVEKAQ 403
             FT+VS+L AC++L   L LG     +  KN     ++ F  NAL+ MY + G V+ AQ
Sbjct: 161 SSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQ 220

Query: 404 RVFREMLRKDK-----FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
            +F  +   D       TW  M+  L  +G   +++++   M+   + PD +T+   L A
Sbjct: 221 MLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPA 280

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C+   M+  GRE  A +     +  N      +VD+      +  A  V   +P     +
Sbjct: 281 CSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQL 340

Query: 519 -VWGALL-GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF---REL 573
            +W A++ G  +   D E  E+ A+  +E +         +  +  AC R + F     +
Sbjct: 341 GLWNAMVCGYAQAGMDEEALELFAR--MEAEAGVVPSETTIAGVLPACARSETFAGKEAV 398

Query: 574 RQMILDRGIKKTP 586
              +L RG+   P
Sbjct: 399 HGYVLKRGMADNP 411


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 246/660 (37%), Positives = 371/660 (56%), Gaps = 70/660 (10%)

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
           D A      +H H+ K    +  F+ N L++ Y   GE+  AR +FD   + D  +WNAM
Sbjct: 39  DQAKRLKSHMHLHLFK---PNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAM 95

Query: 188 FSGYKRVKQFDETRKLFGEM-------------------------------ERKGVLPTS 216
            S Y +    ++ R +F  M                               +++G+ PT 
Sbjct: 96  LSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTE 155

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T V VL+AC +L DL  GK+ H  +  C +  N+ + NALTD+YA CGE+  A  +F  
Sbjct: 156 YTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDR 215

Query: 277 IKNKDVISWTAIVTGY-----------------------------------INRGQVDMA 301
           +  ++V++W  +++GY                                   I  G +D A
Sbjct: 216 MVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEA 275

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
           R+ F ++ E+D V WT MI G  +  +  +AL LF EM   N RPD +TI S++++CA L
Sbjct: 276 RKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKL 335

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            +L  G+ V        V +D+ V +AL+DMYCKCG    A  +F  M  ++  +W +MI
Sbjct: 336 ASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMI 395

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G A+NG   ++L ++  ML  ++ PD VT+VGVLSAC H G+V+EG+EYF  M+ QHG+
Sbjct: 396 GGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGL 455

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           EP   HY CMV+L GR+GH+++A+++I +M  +PNS++W  +L  C +  D +  EMAA+
Sbjct: 456 EPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAAR 515

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
            ++EL+P N   Y++L N+YAA  RW +   +R ++  + +KK    S IE++  VH+FV
Sbjct: 516 CLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFV 575

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
           A D++HP  K I+++L+ +   L+  G+ P+ + V  D GE++K  ++  HSEKLA+A+G
Sbjct: 576 ADDRTHPDAKIIHVQLNRLIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYG 635

Query: 662 LISSGPGVT-IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LI    GVT IRI+KN+R C DCH   K VS +  R VI+RD  RFHHF  G CSCKDYW
Sbjct: 636 LIKKPHGVTPIRIIKNIRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 167/324 (51%), Gaps = 14/324 (4%)

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPN-LILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           C +  D+D  KR   ++      PN   + N L ++YA  GE+  A ++F  +  +D  S
Sbjct: 32  CFRASDVDQAKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFS 91

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           W A+++ Y   G V+  R  FD MP RD V +  +I G+    R   AL +F  MQ   +
Sbjct: 92  WNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGL 151

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           +P E+T VS+L AC  L  L  G+ +   I    +  ++FV NAL D+Y +CG++++A+R
Sbjct: 152 KPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARR 211

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           +F  M+ ++  TW  MI G   N   +K +D+F +M  +++ PD+VT   VL A    G 
Sbjct: 212 LFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGY 271

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM---KPNSIVWG 521
           +DE R+ F ++      E +E  +  M+    + G   +AL +   M +   +P+     
Sbjct: 272 IDEARKVFGEIR-----EKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTIS 326

Query: 522 ALLGACRVHRDAEMAEMAAKQILE 545
           +++ +C     A++A +   Q++ 
Sbjct: 327 SVVSSC-----AKLASLYHGQVVH 345



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 182/464 (39%), Gaps = 130/464 (28%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           +F  +P      +NT+I G++        + ++L M K  ++P  YT   +L   T+ + 
Sbjct: 111 IFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLD 170

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           +  GK++H  ++      +VFV NAL   Y  CGE+D AR +FD     +VVTWN M SG
Sbjct: 171 LRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230

Query: 191 YKRVKQ-----------------------------------FDETRKLFGEMERK----- 210
           Y + +Q                                    DE RK+FGE+  K     
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCW 290

Query: 211 --------------------------GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
                                        P   TI  V+S+CAKL  L  G+  H     
Sbjct: 291 TIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFL 350

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
             +  +L++ +AL DMY  CG    A  IF  ++ ++V+SW +++ GY   GQ D+    
Sbjct: 351 MGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQ-DL---- 405

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                                     EAL+L+  M   N++PD  T V +L+AC + G +
Sbjct: 406 --------------------------EALSLYENMLEENLKPDSVTFVGVLSACVHAGLV 439

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           E G+                      + +C   D        +  L      +  M+   
Sbjct: 440 EEGK----------------------EYFCSMSD--------QHGLEPTPDHYACMVNLF 469

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
             +GH DK++D+ S M   S  P+ + +  VLS C   G +  G
Sbjct: 470 GRSGHMDKAVDLISSM---SQEPNSLIWTTVLSVCVMKGDIKHG 510



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 136/290 (46%), Gaps = 5/290 (1%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           + G +  A KVF +I       W  MI G ++    ++ +L++ +ML  + RPD YT   
Sbjct: 268 QAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISS 327

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           ++    +  ++  G+ +H      G +  + V +AL+  YC CG    A  IF      +
Sbjct: 328 VVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRN 387

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH- 239
           VV+WN+M  GY    Q  E   L+  M  + + P SVT V VLSAC     ++ GK    
Sbjct: 388 VVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFC 447

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQV 298
               +  + P       + +++   G M  A+++  ++  + + + WT +++  + +G +
Sbjct: 448 SMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDI 507

Query: 299 ---DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
              +MA +   ++   + V +  + + Y    R+++  ++   M++ +++
Sbjct: 508 KHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVK 557


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/594 (38%), Positives = 362/594 (60%), Gaps = 7/594 (1%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM---ARGIFDVSYKDDVVTWNAMFSG 190
            KE+H  +       S +V   L+        V +    R +F   +  +   W A+   
Sbjct: 24  AKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWTALIRA 83

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVP 249
           Y       +    +  M ++ V P S T   + SACA ++   +G + H + +       
Sbjct: 84  YALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSS 143

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           +L + NA+ DMY  CG +  A  +F  +  +DVISWT ++  Y   G +  AR  FD +P
Sbjct: 144 DLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLP 203

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
            +D V WTAM+ GY +     +AL +FR ++   +  DE T+V +++ACA LGA +   W
Sbjct: 204 VKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANW 263

Query: 370 VKTYIDKNK--VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           ++   + +   V +++ VG+ALIDMY KCG+VE+A  VF+ M  ++ F++++MIVG AI+
Sbjct: 264 IRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIH 323

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G    ++ +F  ML   + P+ VT+VGVL+AC+H G+VD+G++ FA M   +G+ P    
Sbjct: 324 GRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAEL 383

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y CM DLL RAG+L +AL++++ MPM+ +  VWGALLGA  VH + ++AE+A+K++ EL+
Sbjct: 384 YACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELE 443

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM-NGVVHEFVAGDKS 606
           PDN   Y+LL N YA+  RWD+  ++R+++ ++ +KK PG S +E  NG++H+FVAGD S
Sbjct: 444 PDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVS 503

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           HP+  EI  +L+++   LK +GY P++S +   + + +K   +  HSEKLA+AFGL+S+ 
Sbjct: 504 HPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLSTD 563

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            G TI+I+KNLR+C DCH +    S V  R+++VRD TRFHHF +G+CSC ++W
Sbjct: 564 VGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/457 (24%), Positives = 200/457 (43%), Gaps = 75/457 (16%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS--EKGDMKYACKVFR 73
           E  ++  +E C S++Q K++H+Q     L  +  V  KL+    +        Y   +F 
Sbjct: 8   EWEVVRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFS 67

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           ++  P+   W  +I+ Y+        +  Y  M K  V P ++TF  L            
Sbjct: 68  QLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSAL 127

Query: 134 GKELHCHVLKF-GFDSSVFVQNALISTYCLCGEVDMARGIFD--------------VSYK 178
           G +LH   L   GF S ++V NA+I  Y  CG +  AR +FD              V+Y 
Sbjct: 128 GAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYT 187

Query: 179 -----------------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221
                             D+VTW AM +GY +     +  ++F  +  +GV    VT+V 
Sbjct: 188 RIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVG 247

Query: 222 VLSACAKLKDLDVGKRAH--RYVKECK---IVPNLILENALTDMYAACGEMGFALEIFGN 276
           V+SACA+   L   K A+  R + E     +  N+++ +AL DMY+ CG +  A ++F  
Sbjct: 248 VISACAQ---LGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKG 304

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           ++ ++V S+++++ G+   G                               R R A+ LF
Sbjct: 305 MRERNVFSYSSMIVGFAIHG-------------------------------RARAAIKLF 333

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFVGNALIDMYCK 395
            +M  + ++P+  T V +LTAC++ G ++ G+ +   ++K   V     +   + D+  +
Sbjct: 334 YDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSR 393

Query: 396 CGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
            G +EKA ++   M +  D   W A++    ++G+ D
Sbjct: 394 AGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPD 430


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/592 (38%), Positives = 357/592 (60%), Gaps = 11/592 (1%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  +L+ G      +   L  +Y   G +  +  +F  +   +V  W  + + +    
Sbjct: 41  QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
            F      + +M    + P + T+  +L AC     L   +  H +  +  +  +L +  
Sbjct: 101 LFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYVST 156

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
            L D YA  G++  A ++F  +  + ++S+TA++T Y   G +  AR  F+ M  +D V 
Sbjct: 157 GLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVC 216

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTS-------NIRPDEFTIVSILTACANLGALELGE 368
           W  MIDGY +     EAL  FR+M           +RP+E T+V++L++C  +GALE G+
Sbjct: 217 WNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGK 276

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           WV +Y++ N +K ++ VG AL+DMYCKCG +E A++VF  M  KD   W +MI+G  I+G
Sbjct: 277 WVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHG 336

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
             D++L +F +M    + P ++T+V VL+AC H G+V +G E F  M   +G+EP   HY
Sbjct: 337 FSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHY 396

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
           GCMV+LLGRAG + EA +++++M ++P+ ++WG LL ACR+H +  + E  A+ ++    
Sbjct: 397 GCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGL 456

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
            +   YVLL N+YAA   W    ++R M+   G++K PGCS IE+   VHEFVAGD+ HP
Sbjct: 457 ASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHP 516

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPG 668
           ++K+IY  L++M   LK   Y P    V  D+GE++KE+++  HSEKLA+AFGLIS+ PG
Sbjct: 517 RSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPG 576

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             I+IVKNLR+C+DCH + K++S +  R++I+RD+ RFHHF++GSCSC+DYW
Sbjct: 577 AAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 210/472 (44%), Gaps = 79/472 (16%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           I+  +S H L QIH+  ++ GL  +P +  KL     S  G + ++  +F + P P+V L
Sbjct: 30  IDNSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYAS-LGHLHHSVTLFHRTPNPNVFL 88

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           W  +I  ++  D   + +  Y  ML   ++P+ +T   LLK  T   A    + +H H +
Sbjct: 89  WTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPA----RAVHSHAI 144

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           KFG  S ++V   L+  Y   G+V  A+ +FD   +  +V++ AM + Y +     E R 
Sbjct: 145 KFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARV 204

Query: 203 LFGEMERKGVL--------------------------------------PTSVTIVLVLS 224
           LF  M  K V+                                      P  +T+V VLS
Sbjct: 205 LFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLS 264

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           +C ++  L+ GK  H YV+   I  N+ +  AL DMY  CG +  A ++F  ++ KDV++
Sbjct: 265 SCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVA 324

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           W +++ GY   G  D                               EAL LF EM    +
Sbjct: 325 WNSMIMGYGIHGFSD-------------------------------EALQLFHEMCCIGV 353

Query: 345 RPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           +P + T V++LTACA+ G +  G E   +  D   ++  +     ++++  + G +++A 
Sbjct: 354 KPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAY 413

Query: 404 RVFREM-LRKDKFTWTAMIVGLAINGHGDKSL-DMFSQMLRASIIPDEVTYV 453
            + R M +  D   W  ++    I  H + SL +  +++L ++ +    TYV
Sbjct: 414 DLVRSMEVEPDPVLWGTLLWACRI--HSNVSLGEEIAEILVSNGLASSGTYV 463


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/758 (33%), Positives = 403/758 (53%), Gaps = 72/758 (9%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI-PRPSVCLWNTMIKGYSR 92
           Q+H+  +  G  ++  V N LV       G M  A +VF +     +   WN ++  Y +
Sbjct: 28  QVHAMAMATGFGSDVFVANALVAMY-GGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVK 86

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            D   + + ++ +M+ S ++P  + F  ++   T    ++ G+++H  V++ G++  VF 
Sbjct: 87  NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFT 146

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL+  Y   G VD+A  IF+     DVV+WNA+ SG           +L  +M+  G+
Sbjct: 147 ANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGL 206

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
           +P    +  +L ACA     D+G++ H ++ +     +  +   L DMYA    +  A++
Sbjct: 207 VPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMK 266

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYF--------------------------- 305
           +F  + ++D+I W A+++G  + G+ D A   F                           
Sbjct: 267 VFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEA 326

Query: 306 -------DQMPER-----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI--------- 344
                    + E+     D  +   +ID Y + +   +A+ +F E  + +I         
Sbjct: 327 ASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITA 386

Query: 345 ----------------------RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
                                  PD F + S+L ACA+L A E G+ V  ++ K +  +D
Sbjct: 387 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 446

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
            F GNAL+  Y KCG +E A+  F  +  +   +W+AMI GLA +GHG ++L++F +M+ 
Sbjct: 447 AFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVD 506

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             I P+ +T   VL AC H G+VDE + YF  M    GI+  E HY CM+DLLGRAG L+
Sbjct: 507 EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLD 566

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           +A+E++ +MP + N+ VWGALLGA RVH+D E+ ++AA+++  L+P+    +VLL N YA
Sbjct: 567 DAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYA 626

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
           +   W+   ++R+++ D  IKK P  S +E+   VH F+ GDKSHP TKEIY KLDE+  
Sbjct: 627 SSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGD 686

Query: 623 DLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
            +   GY+P++     D+   +KE  +  HSE+LA+AF L+S+ PG  IR+ KNLR+C D
Sbjct: 687 LMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRD 746

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           CH   K +S +  RE+I+RD  RFHHF+ G+CSC DYW
Sbjct: 747 CHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 168/361 (46%), Gaps = 35/361 (9%)

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           + +  P +LK        + G ++H   +  GF S VFV NAL++ Y   G +D AR +F
Sbjct: 9   NEFALPVVLKCVPD---AQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF 65

Query: 174 D-VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           D    + + V+WN + S Y +  Q  +  ++FGEM   G+ PT      V++AC   +++
Sbjct: 66  DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 125

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
           D G++ H  V       ++   NAL DMY   G +  A  IF  + + DV+SW A+++G 
Sbjct: 126 DAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGC 185

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
           +  G               D+                  A+ L  +M++S + P+ F + 
Sbjct: 186 VLNGH--------------DH-----------------RAIELLLQMKSSGLVPNVFMLS 214

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           SIL ACA  GA +LG  +  ++ K    +D ++G  L+DMY K   ++ A +VF  M  +
Sbjct: 215 SILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR 274

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D   W A+I G +  G  D++  +F  + +  +  +  T   VL +          R+  
Sbjct: 275 DLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVH 334

Query: 473 A 473
           A
Sbjct: 335 A 335



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 140/283 (49%), Gaps = 15/283 (5%)

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
           K VP+  L   +  M  A G        FG+    DV    A+V  Y   G +D AR+ F
Sbjct: 18  KCVPDAQLGAQVHAMAMATG--------FGS----DVFVANALVAMYGGFGFMDDARRVF 65

Query: 306 DQM-PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           D+   ER+ V W  ++  Y++ ++  +A+ +F EM  S I+P EF    ++ AC     +
Sbjct: 66  DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 125

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           + G  V   + +   + D+F  NAL+DMY K G V+ A  +F +M   D  +W A+I G 
Sbjct: 126 DAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGC 185

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
            +NGH  +++++  QM  + ++P+      +L AC   G  D GR+    M   +    +
Sbjct: 186 VLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDD 245

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
               G +VD+  +   L++A++V   M  + + I+W AL+  C
Sbjct: 246 YIGVG-LVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGC 286


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/708 (35%), Positives = 397/708 (56%), Gaps = 21/708 (2%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTV--QNKLVTFCCSEKGDMKYACKVFR 73
           ET L+     C  +    ++ SQ      +  PT+  +N ++       G + +A + F 
Sbjct: 176 ETALVDMFVRCGYVDFASRLFSQ------IERPTIFCRNSMLAGYAKLYG-IDHAIEYFE 228

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
            +    V  WN MI   S+    +  + + ++M +  VR D+ T+   L    R  ++ +
Sbjct: 229 DMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGW 288

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK+LH  V++       +V +ALI  Y  CG    A+ +F+     + V+W  +  G  +
Sbjct: 289 GKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQ 348

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
            + F ++ +LF +M  + +      +  ++S C    DL +G++ H    +      +++
Sbjct: 349 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 408

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            N+L  +YA CG++  A  +F ++  +D++SWT+++T Y   G +  AR++FD M  R+ 
Sbjct: 409 SNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNA 468

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKT 372
           + W AM+  Y++     + L ++  M +  ++ PD  T V++   CA++GA +LG+ +  
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIG 528

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           +  K  +  ++ V NA I MY KCG + +AQ++F  +  KD  +W AMI G + +G G +
Sbjct: 529 HTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQ 588

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +   F  ML     PD ++YV VLS C+H+G+V EG+ YF  MT  HGI P   H+ CMV
Sbjct: 589 AAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMV 648

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGRAGHL EA ++I  MPMKP + VWGALL AC++H + E+AE+AAK + ELD  +  
Sbjct: 649 DLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSG 708

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            Y+LL  IY+   + D+  ++R+++ D+GIKK PG S +E+   VH F A D SHPQ   
Sbjct: 709 SYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIA 768

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I  KLDE+   +  +GY+             +  R+   HSEKLA+AFG++S    + I 
Sbjct: 769 IRNKLDELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLPAWMPIH 817

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I+KNLR+C DCH + KL+S V DRE ++RD  RFHHFK GSCSC DYW
Sbjct: 818 IMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 199/430 (46%), Gaps = 35/430 (8%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR------------------- 170
           A+   + LH  ++  G  S+VF+QN L+  Y  CG +  AR                   
Sbjct: 19  ALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMM 78

Query: 171 -------------GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTS 216
                         +FD   + DV +WN + SGY + ++F +  + F  M R G  LP +
Sbjct: 79  NGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNA 138

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T   V+ +C  L   ++  +      +     +  +E AL DM+  CG + FA  +F  
Sbjct: 139 FTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQ 198

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           I+   +    +++ GY     +D A +YF+ M ERD V W  MI    +  R REAL L 
Sbjct: 199 IERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLV 258

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            EM    +R D  T  S LTACA L +L  G+ +   + ++  + D +V +ALI++Y KC
Sbjct: 259 VEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKC 318

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G  ++A+RVF  +  ++  +WT +I G        KS+++F+QM    +  D+     ++
Sbjct: 319 GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLI 378

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           S C +   +  GR+  + + ++ G          ++ L  + G L  A  V  +M  + +
Sbjct: 379 SGCFNRMDLCLGRQLHS-LCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER-D 436

Query: 517 SIVWGALLGA 526
            + W +++ A
Sbjct: 437 IVSWTSMITA 446



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 144/603 (23%), Positives = 257/603 (42%), Gaps = 110/603 (18%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIK-LGLLTNPTVQNKLVTFCCSEKGD 64
           ++   S +  +  L+    +C ++   +++    IK   ++T+  + N       +++G 
Sbjct: 32  TVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGY-----AKQGS 86

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLK 123
           +  A ++F ++PR  V  WNT++ GY +     +G+  ++ M +S D  P+ +TF  ++K
Sbjct: 87  LSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMK 146

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD--------- 174
                   E   +L     KF F     V+ AL+  +  CG VD A  +F          
Sbjct: 147 SCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFC 206

Query: 175 -----------------VSY-----KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
                            + Y     + DVV+WN M +   +  +  E   L  EM RKGV
Sbjct: 207 RNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV 266

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL--ILENALTDMYAACGEMGFA 270
              S T    L+ACA+L  L  GK+ H   K  + +P +   + +AL ++YA CG    A
Sbjct: 267 RLDSTTYTSSLTACARLFSLGWGKQLH--AKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
             +F ++++++ +SW                               T +I G L+   F 
Sbjct: 325 KRVFNSLQDRNSVSW-------------------------------TVLIGGSLQYECFS 353

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           +++ LF +M+   +  D+F + ++++ C N   L LG  + +   K+     I V N+LI
Sbjct: 354 KSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLI 413

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING---------------------- 428
            +Y KCGD++ A+ VF  M  +D  +WT+MI   +  G                      
Sbjct: 414 SLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNA 473

Query: 429 -------HG--DKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
                  HG  +  L M+S ML +  + PD VTYV +   C   G    G +     T++
Sbjct: 474 MLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGH-TVK 532

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
            G+  N +     + +  + G ++EA ++   +  K + + W A++     H    M + 
Sbjct: 533 AGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGK-DVVSWNAMITGYSQH---GMGKQ 588

Query: 539 AAK 541
           AAK
Sbjct: 589 AAK 591



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 144/339 (42%), Gaps = 37/339 (10%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF-GNIKNK 280
            L +C     L   +  H  +    +   + L+N L   Y +CG +  A  +   +IK  
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEP 69

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +VI+   ++ GY  +G +  A + FD+MP RD   W  ++ GY +  RF + L  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 341 TS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
            S +  P+ FT   ++ +C  LG  EL   +     K     D  V  AL+DM+ +CG V
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 400 EKAQRVFRE-------------------------------MLRKDKFTWTAMIVGLAING 428
           + A R+F +                               M  +D  +W  MI  L+ +G
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ-HGIEPNEAH 487
              ++L +  +M R  +  D  TY   L+AC     +  G++  A +      I+P  A 
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA- 308

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
              +++L  + G   EA  V  ++  + NS+ W  L+G 
Sbjct: 309 -SALIELYAKCGSFKEAKRVFNSLQDR-NSVSWTVLIGG 345


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/708 (35%), Positives = 397/708 (56%), Gaps = 21/708 (2%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTV--QNKLVTFCCSEKGDMKYACKVFR 73
           ET L+     C  +    ++ SQ      +  PT+  +N ++       G + +A + F 
Sbjct: 166 ETALVDMFVRCGYVDFASRLFSQ------IERPTIFCRNSMLAGYAKLYG-IDHAIEYFE 218

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
            +    V  WN MI   S+    +  + + ++M +  VR D+ T+   L    R  ++ +
Sbjct: 219 DMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGW 278

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK+LH  V++       +V +ALI  Y  CG    A+ +F+     + V+W  +  G  +
Sbjct: 279 GKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQ 338

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
            + F ++ +LF +M  + +      +  ++S C    DL +G++ H    +      +++
Sbjct: 339 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 398

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            N+L  +YA CG++  A  +F ++  +D++SWT+++T Y   G +  AR++FD M  R+ 
Sbjct: 399 SNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNA 458

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKT 372
           + W AM+  Y++     + L ++  M +  ++ PD  T V++   CA++GA +LG+ +  
Sbjct: 459 ITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIG 518

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           +  K  +  ++ V NA I MY KCG + +AQ++F  +  KD  +W AMI G + +G G +
Sbjct: 519 HTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQ 578

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +   F  ML     PD ++YV VLS C+H+G+V EG+ YF  MT  HGI P   H+ CMV
Sbjct: 579 AAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMV 638

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGRAGHL EA ++I  MPMKP + VWGALL AC++H + E+AE+AAK + ELD  +  
Sbjct: 639 DLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSG 698

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            Y+LL  IY+   + D+  ++R+++ D+GIKK PG S +E+   VH F A D SHPQ   
Sbjct: 699 SYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIA 758

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I  K+DE+   +  +GY+             +  R+   HSEKLA+AFG++S    + I 
Sbjct: 759 IRNKMDELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLPAWMPIH 807

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I+KNLR+C DCH + KL+S V DRE ++RD  RFHHFK GSCSC DYW
Sbjct: 808 IMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 149/615 (24%), Positives = 251/615 (40%), Gaps = 132/615 (21%)

Query: 10  PSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           P  +TQ   L   + +C S   L   + +H + + +GL +   +QN L+    S  G + 
Sbjct: 16  PHAVTQ--ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLS-CGALS 72

Query: 67  YACKVFRK-IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
            A ++ R  I  P+V   N M+ GY++  S  +   ++  M + DV   N          
Sbjct: 73  DARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNT--------L 124

Query: 126 TRDIAVEFGKELHCHVL--------------KFGFDSSVFVQNALISTYCLCGEVDMARG 171
             D +   G  + C  L              KF F     V+ AL+  +  CG VD A  
Sbjct: 125 MSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASR 184

Query: 172 IFD--------------------------VSY-----KDDVVTWNAMFSGYKRVKQFDET 200
           +F                           + Y     + DVV+WN M +   +  +  E 
Sbjct: 185 LFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREA 244

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL--ILENALT 258
             L  EM RKGV   S T    L+ACA+L  L  GK+ H   K  + +P +   + +AL 
Sbjct: 245 LGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLH--AKVIRSLPQIDPYVASALI 302

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           ++YA CG    A  +F ++++++ +SW                               T 
Sbjct: 303 ELYAKCGSFKEAKRVFNSLQDRNSVSW-------------------------------TV 331

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           +I G L+   F +++ LF +M+   +  D+F + ++++ C N   L LG  + +   K+ 
Sbjct: 332 LIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSG 391

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV---------------- 422
               I V N+LI +Y KCGD++ A+ VF  M  +D  +WT+MI                 
Sbjct: 392 HNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFD 451

Query: 423 GLAI---------------NGHGDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVD 466
           G+A                +G  +  L M+S ML +  + PD VTYV +   C   G   
Sbjct: 452 GMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANK 511

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            G +     T++ G+  N +     + +  + G ++EA ++   +  K + + W A++  
Sbjct: 512 LGDQIIGH-TVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGK-DVVSWNAMITG 569

Query: 527 CRVHRDAEMAEMAAK 541
              H    M + AAK
Sbjct: 570 YSQH---GMGKQAAK 581


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/704 (34%), Positives = 392/704 (55%), Gaps = 32/704 (4%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
             L++   +   + + KQ+HS  +K G+  +   +  L+     + GD++ A  +F    
Sbjct: 249 ASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYV-KCGDIETAHDIFNLGD 307

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           R +V LWN M+  Y +I        I+  M  + + P+ +T+P +L+  T    +E G++
Sbjct: 308 RTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQ 367

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H   +K GF+S ++V   LI  Y     +D AR I ++  K DVV+W +M +GY +   
Sbjct: 368 IHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            +E    F EM+  GV P ++ +    SACA +K +  G + H  V       ++ + N 
Sbjct: 428 CEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNT 487

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L ++YA C                               G+ + A   F ++  +D + W
Sbjct: 488 LVNLYARC-------------------------------GRSEEAFSLFREIDHKDEITW 516

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
             +I G+ +   + +AL +F +M  +  + + FT +S ++A ANL  ++ G+ V     K
Sbjct: 517 NGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVK 576

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
               ++  V NALI +Y KCG +E A+ +F EM  +++ +W  +I   + +G G ++LD+
Sbjct: 577 TGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDL 636

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F QM +  + P++VT++GVL+AC+H G+V+EG  YF  M+  +G+ P   HY C+VD+LG
Sbjct: 637 FDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILG 696

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           RAG L+ A   +  MP+  N+++W  LL AC+VH++ E+ E+AAK +LEL+P + A YVL
Sbjct: 697 RAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVL 756

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L N YA   +W N  ++R+M+ DRGI+K PG S IE+   VH F  GD+ HP + +IY  
Sbjct: 757 LSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKF 816

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L E+   L  +GY  +   +F +  +E K+   + HSEKLA+AFGL++  P + +R++KN
Sbjct: 817 LSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKN 876

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C DCH   K  S V  RE+++RD  RFHHF  GSCSC DYW
Sbjct: 877 LRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 138/513 (26%), Positives = 241/513 (46%), Gaps = 39/513 (7%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           +IH+ ++  GL  +  + N L+    ++ G +  A +VF+++       W  M+ GY++ 
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLY-AKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQR 122

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
              K    +Y  M  + V P  Y    +L   T+      G+ +H  V K  F S  FV 
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           NALI+ Y   G   +A  +F      D VT+N + SG+ +    +   ++F EM+  G+ 
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  VT+  +L+ACA + DL  GK+ H Y+ +  +  + I E +L D+Y  CG++  A +I
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 274 FGNIKNKDVISWTAIVTGYINRGQV-DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           F      +V+ W  ++  Y   GQ+ D+A+ +                            
Sbjct: 303 FNLGDRTNVVLWNLMLVAY---GQISDLAKSF---------------------------- 331

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
             +F +MQ + I P++FT   IL  C   G +ELGE + +   KN  ++D++V   LIDM
Sbjct: 332 -EIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDM 390

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y K   ++KA+++   + ++D  +WT+MI G   +   +++L  F +M    + PD +  
Sbjct: 391 YSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGL 450

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
               SAC     + +G +  A + +  G   + + +  +V+L  R G   EA  + + + 
Sbjct: 451 ASAASACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREID 509

Query: 513 MKPNSIVWGALL---GACRVHRDAEMAEMAAKQ 542
            K + I W  L+   G  R++  A M  M   Q
Sbjct: 510 HK-DEITWNGLISGFGQSRLYEQALMVFMKMSQ 541


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 255/638 (39%), Positives = 382/638 (59%), Gaps = 38/638 (5%)

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           M++ YS +  H   VL+Y  M    VRPD + +P L+K      A   G   H HVLK G
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKS-----AGTGGIGFHAHVLKLG 55

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
             S  FV+NA+I  Y        AR + D         WNAM SGY + +   + + LF 
Sbjct: 56  HGSDAFVRNAVIDMY--------ARKVAD---------WNAMVSGYWKWESEGQAQWLFD 98

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
            M  + V    +T   +++  AK+KDL+    A RY  +C    +++  NA+   YA  G
Sbjct: 99  VMPERNV----ITWTAMVTGYAKVKDLEA---ARRYF-DCMPERSVVSWNAMLSGYAQNG 150

Query: 266 EMGFALEIFGNIKN--KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
               AL +F  +    ++ ++W A+++ Y+  G +D AR+ F+ MP R+ V W +MI GY
Sbjct: 151 LAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGY 210

Query: 324 LRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
            +  +   A+ LF+EM T+  + PDE T+VS+++AC +LGALELG WV  ++ +N++K  
Sbjct: 211 AQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLS 270

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           I   NA+I MY +CG +E A+RVF+EM  +D  ++  +I G A +GHG +++++ S M  
Sbjct: 271 ISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKE 330

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             I PD VT++GVL+AC+H G+++EGR+ F  +      +P   HY CMVDLLGR G L 
Sbjct: 331 GGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELE 385

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           +A   ++ MPM+P++ V+G+LL A R+H+  E+ E+AA ++ EL+PDN   ++LL NIYA
Sbjct: 386 DAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYA 445

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
           +  RW +   +R+ +   G+KKT G S +E  G +H+F+  D+SH ++ +IY  L E+  
Sbjct: 446 SAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRK 505

Query: 623 DLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
            ++  GY+ D S V  DV EE+KE  V  HSEKLA+ + L+ S  G  IR+VKNLR+C D
Sbjct: 506 KMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWD 565

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           CH   K++S +  R +IVRD  RFH F  G CSCKDYW
Sbjct: 566 CHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 170/390 (43%), Gaps = 59/390 (15%)

Query: 36  HSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK-------------YACKVFRKIPRPSVCL 82
           H+  +KLG  ++  V+N ++     +  D                A  +F  +P  +V  
Sbjct: 48  HAHVLKLGHGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVIT 107

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF--LLKGFTRDIAVEFGKELHCH 140
           W  M+ GY+++   +     +      D  P+     +  +L G+ ++   E    L   
Sbjct: 108 WTAMVTGYAKVKDLEAARRYF------DCMPERSVVSWNAMLSGYAQNGLAEEALRLFDE 161

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           +L  G   +    NA+IS Y   G++D AR +F+     +VVTWN+M +GY +  Q    
Sbjct: 162 ML--GAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMA 219

Query: 201 RKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
            +LF EM   K + P  VT+V V+SAC  L  L++G    R++ E +I  ++   NA+  
Sbjct: 220 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIF 279

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY+ CG M  A  +F  +  +DV+S+  +++G+   G                       
Sbjct: 280 MYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGH---------------------- 317

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
                      EA+ L   M+   I PD  T + +LTAC++ G LE G  V   I    +
Sbjct: 318 ---------GVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAI 368

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
            +       ++D+  + G++E A+R    M
Sbjct: 369 DHYA----CMVDLLGRVGELEDAKRTMERM 394


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/705 (35%), Positives = 386/705 (54%), Gaps = 35/705 (4%)

Query: 19   LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            L S +  C S   L   +Q+H+ T KLG  +N  ++  L+    ++  D++ A   F + 
Sbjct: 375  LASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLY-AKCSDIETALNYFLET 433

Query: 76   PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
               +V LWN M+  Y  +D  +N   I+  M   ++ P+ YT+P +LK   R   +E G+
Sbjct: 434  EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 493

Query: 136  ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
            ++H  ++K  F  + +V + LI  Y   G++D A  I       DVV+W  M +GY +  
Sbjct: 494  QIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 553

Query: 196  QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
              D+    F +M  +G+    V +   +SACA L+ L  G++ H          +L  +N
Sbjct: 554  FDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQN 613

Query: 256  ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
            AL  +Y+ CG                                ++ A   F+Q    D + 
Sbjct: 614  ALVTLYSKCG-------------------------------NIEEAYLAFEQTEAGDNIA 642

Query: 316  WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
            W A++ G+ +     EAL +F  M    I  + FT  S + A +    ++ G+ V   I 
Sbjct: 643  WNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVIT 702

Query: 376  KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
            K    ++  V NA+I MY KCG +  A++ F E+  K++ +W AMI   + +G G ++LD
Sbjct: 703  KTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALD 762

Query: 436  MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
             F QM+ +++ P+ VT VGVLSAC+H G+VD+G EYF  M  ++G+ P   HY C+VD+L
Sbjct: 763  SFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDML 822

Query: 496  GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
             RAG L+ A + I  MP++P+++VW  LL AC VH++ E+ E AA  +LEL+P++ A YV
Sbjct: 823  TRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYV 882

Query: 556  LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
            LL N+YA C +WD     RQ + ++G+KK PG S IE+   +H F  GD++HP   EI+ 
Sbjct: 883  LLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHE 942

Query: 616  KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
               ++T     +GY+ D   +  ++ +E K+  ++ HSEKLA++FGL+S    + I ++K
Sbjct: 943  YFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMK 1002

Query: 676  NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            NLR+C DCH   K VS V +RE+IVRD  RFHHF+ G+CSCKDYW
Sbjct: 1003 NLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 145/505 (28%), Positives = 229/505 (45%), Gaps = 34/505 (6%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           ++QIH++ I  GL  +  V N L+    S  G +  A +VF  +       W  MI G S
Sbjct: 189 VEQIHARIIYQGLGKSTIVCNPLIDLY-SRNGFVDRARRVFDGLYLKDHSSWVAMISGLS 247

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           + +     + ++ DM    + P  Y F  +L    +  ++E G++LH  VLK GF S  +
Sbjct: 248 KNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 307

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V NAL+S Y   G +  A  IF    + D VT+N + +G  +    ++  +LF  M+  G
Sbjct: 308 VCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDG 367

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           + P S T+  ++ AC+    L  G++ H Y  +     N  +E AL ++YA C ++  AL
Sbjct: 368 LEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETAL 427

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
             F   + ++V+                               LW  M+  Y  ++  R 
Sbjct: 428 NYFLETEVENVV-------------------------------LWNVMLVAYGLLDDLRN 456

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           +  +FR+MQ   I P+++T  SIL  C  LG LELGE + + I K   + + +V + LID
Sbjct: 457 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLID 516

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY K G ++ A  +      KD  +WT MI G       DK+L  F QML   I  DEV 
Sbjct: 517 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 576

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
               +SAC     + EG++  A   +  G   +      +V L  + G++ EA    +  
Sbjct: 577 LTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYSKCGNIEEAYLAFEQT 635

Query: 512 PMKPNSIVWGALLGACRVHRDAEMA 536
               N I W AL+   +   + E A
Sbjct: 636 EAGDN-IAWNALVSGFQQSGNNEEA 659



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/550 (24%), Positives = 262/550 (47%), Gaps = 38/550 (6%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           + ++S  +  ES+   +Q+H   +KLG  ++  V N LV+      G +  A  +F  + 
Sbjct: 275 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYF-HLGSLISAEHIFSNMS 333

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           +     +NT+I G S+    +  + ++  M    + PD+ T   L+   + D  +  G++
Sbjct: 334 QRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQ 393

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           LH +  K GF S+  ++ AL++ Y  C +++ A   F  +  ++VV WN M   Y  +  
Sbjct: 394 LHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDD 453

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
              + ++F +M+ + ++P   T   +L  C +L DL++G++ H  + +     N  + + 
Sbjct: 454 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSV 513

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY-FDQMPERDYVL 315
           L DMYA  G++  A +I      KDV+SWT ++ GY          QY FD         
Sbjct: 514 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT---------QYNFDD-------- 556

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
                          +ALT FR+M    IR DE  + + ++ACA L AL+ G+ +     
Sbjct: 557 ---------------KALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 601

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
            +   +D+   NAL+ +Y KCG++E+A   F +    D   W A++ G   +G+ +++L 
Sbjct: 602 VSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 661

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +F++M R  I  +  T+   + A + T  + +G++  A +T + G +        ++ + 
Sbjct: 662 VFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVIT-KTGYDSETEVCNAIISMY 720

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
            + G +++A +    + MK N + W A++ A   H     A  +  Q++    +    +V
Sbjct: 721 AKCGSISDAKKQFLELSMK-NEVSWNAMINAYSKHGFGSEALDSFDQMIH--SNVRPNHV 777

Query: 556 LLCNIYAACN 565
            L  + +AC+
Sbjct: 778 TLVGVLSACS 787



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 14  TQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           + E  L + +  C  +  LK   QIH+Q    G  ++   QN LVT   S+ G+++ A  
Sbjct: 572 SDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL-YSKCGNIEEAYL 630

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
            F +        WN ++ G+ +  +++  + ++  M +  +  +N+TF   +K  +    
Sbjct: 631 AFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETAN 690

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV-DMARGIFDVSYKDDVVTWNAMFS 189
           ++ GK++H  + K G+DS   V NA+IS Y  CG + D  +   ++S K++ V+WNAM +
Sbjct: 691 MKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNE-VSWNAMIN 749

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
            Y +     E    F +M    V P  VT+V VLSAC+ +  +D G
Sbjct: 750 AYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 795



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 148/365 (40%), Gaps = 45/365 (12%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLK-DLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           +E  G+ P   T+  +L  C K    LD G++ H  + +     N  L   L D Y    
Sbjct: 58  VENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFY---- 113

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
                                      + +G +D A + FD+MPER    W  MI     
Sbjct: 114 ---------------------------LFKGDLDGALKVFDEMPERTIFTWNKMIKELAS 146

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG-ALELGEWVKTYIDKNKVKNDIF 384
            +   +   LF  M   N+ P+E T   +L AC     A ++ E +   I    +     
Sbjct: 147 RSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTI 206

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           V N LID+Y + G V++A+RVF  +  KD  +W AMI GL+ N    +++ +F  M    
Sbjct: 207 VCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLG 266

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           I+P    +  VLSAC     ++ G E    + ++ G   +      +V L    G L  A
Sbjct: 267 IMPTPYAFSSVLSACKKIESLEIG-EQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISA 325

Query: 505 LEVIKNMPMKP----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
             +  NM  +     N+++ G  L  C     A M      Q+  L+PD+      L ++
Sbjct: 326 EHIFSNMSQRDAVTYNTLING--LSQCGYGEKA-MELFKRMQLDGLEPDSNT----LASL 378

Query: 561 YAACN 565
             AC+
Sbjct: 379 VVACS 383


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/705 (34%), Positives = 397/705 (56%), Gaps = 38/705 (5%)

Query: 20  ISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           ++ ++ C  +  L   +++H+  +K G   N      LV +  ++ G +  A +VF +I 
Sbjct: 271 VAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMY--AKYGRVDSALRVFGQIA 328

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
                 WN+M+  Y +   +   +  + +ML+   +PD+     L         +  G+E
Sbjct: 329 EKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGRE 388

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
            H + +K    + + V N L+  Y  CG ++ +  +F+     D ++W  + + + +  +
Sbjct: 389 FHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSR 448

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
             E  ++  E++++G++  S+ I  +L  C  LK + + K+ H Y     ++ +LILEN 
Sbjct: 449 HSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLL-DLILENR 507

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L D+Y  CGE   +L +F  ++ K                               D V W
Sbjct: 508 LIDIYGECGEFDHSLNLFQRVEKK-------------------------------DIVSW 536

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           T+MI+      R   A+ LF EMQ +NI+PD   +VSIL A A L +L  G+ V  ++ +
Sbjct: 537 TSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIR 596

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
                +  V ++L+DMY  CG +  A RVF     KD   WTAMI    ++GHG +++D+
Sbjct: 597 RNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDL 656

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F +ML+  + PD V+++ +L AC+H+ +V+EG+ Y   M  ++ ++P + HY C+VD+LG
Sbjct: 657 FKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILG 716

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R+G   EA E IK MPM P S VW ALLGACRVHR+  +A +AA ++LEL+PDN   Y+L
Sbjct: 717 RSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYIL 776

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           + N++A   +W+N +E R  + +RG++K P CS IE+   +H F +GD  H  ++ I+LK
Sbjct: 777 VSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLK 836

Query: 617 LDEMTSDLKFV-GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
           L E+T  L+   GY+ D   V  D  EE+K   +++HSE++A+AFGLIS+ PG+ IRI K
Sbjct: 837 LSEITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAK 896

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH   KLVS +++R+++VRD  RFHHF  GSCSC+D+W
Sbjct: 897 NLRVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 228/507 (44%), Gaps = 52/507 (10%)

Query: 33  KQIHSQTIKLGLLT---NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
           +Q+H+  +  G L    +  +  KLV F     G +  A ++F  +P  +V  WN ++  
Sbjct: 77  RQVHAHAVTTGSLNEDDDGFLATKLV-FMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 90  YSRIDSHKNGVLIYLDMLKSDV---RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           Y    S    + +Y  M  S      PD  T   +LK    +     G E+H   +K G 
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGL 195

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKD--DVVTWNAMFSGYKRVKQFDETRKLF 204
           D S  V NALI  Y  CG +D A  +F+   +D  DV +WN++ SG  +  +  E   LF
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
             M+  G    S T V VL  CA+L  L +G+  H  + +C    N I  NAL  MYA  
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELN-IQCNALLVMYA-- 312

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
                                          G+VD A + F Q+ E+DY+ W +M+  Y+
Sbjct: 313 -----------------------------KYGRVDSALRVFGQIAEKDYISWNSMLSCYV 343

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
           + + + EA+  F EM     +PD   +VS+ +A  +L  L  G     Y  K ++  D+ 
Sbjct: 344 QNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQ 403

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           VGN L+DMY KCG +E + +VF  M  +D  +WT ++   A +    ++L+M  ++ +  
Sbjct: 404 VGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEG 463

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG----IEPNEAHYGCMVDLLGRAGH 500
           I+ D +    +L  C     +   ++      I++G    I  N      ++D+ G  G 
Sbjct: 464 IMVDSMMIGSILETCCGLKSISLLKQVHC-YAIRNGLLDLILENR-----LIDIYGECGE 517

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGAC 527
            + +L + + +  K + + W +++  C
Sbjct: 518 FDHSLNLFQRVE-KKDIVSWTSMINCC 543


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/617 (39%), Positives = 355/617 (57%), Gaps = 7/617 (1%)

Query: 108 KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVD 167
           ++D RP    +  L+    R  A+E G+ +H H     F   VF+ N L+  Y  CG + 
Sbjct: 80  RTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLV 139

Query: 168 MARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
            A+ +FD     D+ +WN M  GY ++ + ++ RKLF EM ++     +  I   ++   
Sbjct: 140 DAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQ 199

Query: 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI----KNKDVI 283
             + L++ +   R+ +      N    ++     AA   +    EI G +     N D +
Sbjct: 200 PREALELFRVMQRHERSSS---NKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEV 256

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
            W+A++  Y   G +D AR  FDQM +RD V WT MI       R  E   LFR++  S 
Sbjct: 257 VWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSG 316

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           +RP+E+T   +L ACA+  A  LG+ V  Y+         F  +AL+ MY KCG+   A+
Sbjct: 317 VRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVAR 376

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
           RVF EM + D  +WT++IVG A NG  D++L  F  +L++   PD+VTYVGVLSACTH G
Sbjct: 377 RVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAG 436

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
           +VD+G EYF  +  +HG+     HY C++DLL R+G   EA  +I NMP+KP+  +W +L
Sbjct: 437 LVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASL 496

Query: 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           LG CR+H + E+A+ AAK + E++P+N A Y+ L NIYA    W     +R+ + + GI 
Sbjct: 497 LGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIV 556

Query: 584 KTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEE 643
           K PG S IE+   VH F+ GD SHP+T +I+  L E++  +K  GY+PD + V  DV EE
Sbjct: 557 KKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEE 616

Query: 644 DKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDK 703
            KE+ +  HSEKLA+ FG+IS+ PG  I++ KNLR CVDCH   K +S +  R++ VRD 
Sbjct: 617 QKEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDS 676

Query: 704 TRFHHFKHGSCSCKDYW 720
            RFH F+ GSCSCKDYW
Sbjct: 677 NRFHCFEDGSCSCKDYW 693



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/482 (23%), Positives = 206/482 (42%), Gaps = 77/482 (15%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +++H+ T     +    + N+L+    ++ G +  A  +F ++    +C WNTMI GY++
Sbjct: 107 RRVHAHTKASNFVPGVFISNRLLDMY-AKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAK 165

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT-------------------RDIAVEF 133
           +   +    ++ +M +     DN+++   + G+                    R  + +F
Sbjct: 166 LGRLEQARKLFDEMPQR----DNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKF 221

Query: 134 -----------------GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
                            GKE+H ++++   +    V +AL+  Y  CG +D ARGIFD  
Sbjct: 222 TLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQM 281

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
              DVV+W  M        + +E   LF ++ + GV P   T   VL+ACA      +GK
Sbjct: 282 KDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGK 341

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
             H Y+      P     +AL  MY+ CG    A  +F  +   D++SWT+++ GY   G
Sbjct: 342 EVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNG 401

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
           Q D                               EAL  F  +  S  +PD+ T V +L+
Sbjct: 402 QPD-------------------------------EALHFFELLLQSGTKPDQVTYVGVLS 430

Query: 357 ACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
           AC + G ++ G E+  +  +K+ + +       +ID+  + G  ++A+ +   M ++ DK
Sbjct: 431 ACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDK 490

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFA 473
           F W +++ G  I  HG+  L   +      I P+   TY+ + +   + G+  E      
Sbjct: 491 FLWASLLGGCRI--HGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRK 548

Query: 474 DM 475
           DM
Sbjct: 549 DM 550


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/590 (40%), Positives = 362/590 (61%), Gaps = 6/590 (1%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K+ H +++     +   + N  +    L   +  A  +FD   + D+  +N M   +   
Sbjct: 196 KQTHANLITTAQITLPVIANKFLKNVAL-ASLTYAHKLFDQIPQPDLFIYNTMIKSHSMS 254

Query: 195 KQ-FDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
              + ++  +F  + R  G  P   + V    AC     +  G++   +  +  +  N+ 
Sbjct: 255 PHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVF 314

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + NAL  M+   G +  A  +F +  ++D  SW  ++  Y+  G + +A++ FD+M ERD
Sbjct: 315 VVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERD 374

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W+ +I GY++V  F EAL  F +M  S ++P+E+T+VS L AC+NL AL+ G+W+  
Sbjct: 375 VVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHV 434

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK-FTWTAMIVGLAINGHGD 431
           YI ++ +K +  +  +LIDMY KCG+++ A  VF E   K K + W AMI G A++G  +
Sbjct: 435 YIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPE 494

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           +++++F +M    + P++VT++ +L+AC+H  MV EG+ YF  M   +GI P   HYGCM
Sbjct: 495 EAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCM 554

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLL R+GHL ++ E+I +MPM P+  +WGALL ACR+++D E      + I E+DP++ 
Sbjct: 555 VDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHI 614

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMI-LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              VLL NIY+   RW+  R +R+   ++   KK PG S IE+NGV HEF+ GD+SHPQ+
Sbjct: 615 GCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDRSHPQS 674

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQHSEKLAMAFGLISSGPGV 669
           +EIY  LDEM S LK  GY+P++ EV LD   EEDKE A+  HSEKLA+AFGL+++ PG 
Sbjct: 675 REIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNTAPGT 734

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
            IRIVKNLR+C DCH+  K +S VYDR +IVRD+ R+HHFK G CSCKDY
Sbjct: 735 PIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 145/535 (27%), Positives = 235/535 (43%), Gaps = 110/535 (20%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           + P      + L S I+ C+S++Q+KQ H+  I    +T P + NK +         + Y
Sbjct: 171 TKPFHYVNHSKLSSLIDLCKSINQIKQTHANLITTAQITLPVIANKFLKNVA--LASLTY 228

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYS-RIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGF 125
           A K+F +IP+P + ++NTMIK +S    S+ + + ++  +++ S   P+ Y+F F     
Sbjct: 229 AHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGAC 288

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS--------- 176
              + V  G+++  H +K G D +VFV NALI  +   G V+ AR +FD +         
Sbjct: 289 GNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWN 348

Query: 177 ----------------------YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
                                 ++ DVV+W+ + +GY +V  F E    F +M +  V P
Sbjct: 349 TMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKP 408

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
              T+V  L+AC+ L  LD GK  H Y++   I  N  L  +L DMYA CGE+  A  +F
Sbjct: 409 NEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVF 468

Query: 275 GNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
              K  + V  W A++ G+   G+           PE                    EA+
Sbjct: 469 HEHKVKRKVWPWNAMIGGFAMHGK-----------PE--------------------EAI 497

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            +F +M+   + P++ T +++L AC++   ++ G   K+Y +       I   N  I+ Y
Sbjct: 498 NVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEG---KSYFELMASDYGI---NPEIEHY 551

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
                                     M+  L+ +GH   S +M   +L   + PD   + 
Sbjct: 552 ------------------------GCMVDLLSRSGHLKDSEEM---ILSMPMAPDVAIWG 584

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR----AGHLNEA 504
            +L+AC      D  R Y     I+  I+PN  H GC V LLG     +G  NEA
Sbjct: 585 ALLNACRIYK--DMERGYRIGRIIKE-IDPN--HIGCNV-LLGNIYSTSGRWNEA 633


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/729 (35%), Positives = 397/729 (54%), Gaps = 74/729 (10%)

Query: 43  GLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS---VCLWNTMIKGYSRIDSHKNG 99
           G  +N  + N LV    S  G ++ A  +F +I +     V  WN+++  + +  +    
Sbjct: 185 GFESNVFICNALVAMY-SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTA 243

Query: 100 VLIYLDML------KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           + ++  M        ++ R D  +   +L       AV   KE+H + ++ G    VFV 
Sbjct: 244 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVG 303

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK--- 210
           NALI  Y  CG ++ A  +F++    DVV+WNAM +GY +   F+   +LF  M ++   
Sbjct: 304 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIP 363

Query: 211 --------------------------------GVLPTSVTIVLVLSACAKLKDLDVGKRA 238
                                           G LP  VTI+ VLSACA L     G   
Sbjct: 364 LDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI 423

Query: 239 HRY-VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
           H Y +K C     L L+N                  FG  +++D++ + A++  Y     
Sbjct: 424 HAYSLKNCL----LTLDND-----------------FGG-EDEDLMVYNALIDMYSKCRS 461

Query: 298 VDMARQYFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFREM--QTSNIRPDEFTIVS 353
              AR  FD +P  ER+ V WT MI G+ +     +AL LF EM  +   + P+ +TI  
Sbjct: 462 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 521

Query: 354 ILTACANLGALELGEWVKTYIDKNK--VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           IL ACA+L A+ +G+ +  Y+ ++     +  FV N LIDMY KCGDV+ A+ VF  M +
Sbjct: 522 ILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ 581

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           K   +WT+M+ G  ++G G ++LD+F +M +A  +PD++T++ VL AC+H GMVD+G  Y
Sbjct: 582 KSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSY 641

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531
           F  M+  +G+ P   HY C +DLL R+G L++A   +K+MPM+P ++VW ALL ACRVH 
Sbjct: 642 FDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHS 701

Query: 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMI 591
           + E+AE A  +++E++ +N+  Y L+ NIYA   RW +   +R ++   GIKK PGCS +
Sbjct: 702 NVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 761

Query: 592 EMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQ 651
           +       F  GD+SHP + +IY  L+ +   +K +GY+P+ +    DV EE+K   + +
Sbjct: 762 QGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVE 821

Query: 652 HSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH 711
           HSEKLA+A+GL+++ PG  IRI KNLR+C DCH     +S + D E++VRD +RFHHFK+
Sbjct: 822 HSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKN 881

Query: 712 GSCSCKDYW 720
           GSCSC  YW
Sbjct: 882 GSCSCGGYW 890



 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 170/563 (30%), Positives = 276/563 (49%), Gaps = 60/563 (10%)

Query: 21  SPIETCESMHQLKQIHSQTIKLG---------------LLTNPTVQNK-LVTFCCSEK-- 62
           S ++ C+S + + QIH Q I  G               L + P +  + L T   +    
Sbjct: 42  SLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLA 101

Query: 63  -GDMKYACKVFRKI-PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
            G   YA  V  ++ P P+V  WN +I+ + +     + + +   ML++  RPD++T P 
Sbjct: 102 CGATDYALLVLERVTPSPAV-WWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPH 160

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK-- 178
           +LK      +   G   H  +   GF+S+VF+ NAL++ Y  CG ++ A  IFD   +  
Sbjct: 161 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 220

Query: 179 -DDVVTWNAMFSGYKRVKQFDETRKLFGEM----------ERKGVLPTSVTIVLVLSACA 227
            DDV++WN++ S + +         LF +M          ER  +    ++IV +L AC 
Sbjct: 221 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI----ISIVNILPACG 276

Query: 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
            LK +   K  H         P++ + NAL D YA CG M  A+++F  ++ KDV+SW A
Sbjct: 277 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 336

Query: 288 IVTGYINRGQVDMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           +V GY   G  + A + F  M +     D V WTA+I GY +     EAL LFR+M  S 
Sbjct: 337 MVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG 396

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV----------KNDIFVGNALIDMY 393
             P+  TI+S+L+ACA+LGA   G  +  Y  KN +            D+ V NALIDMY
Sbjct: 397 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 456

Query: 394 CKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRA--SIIPDE 449
            KC   + A+ +F ++  +++   TWT MI G A  G  + +L +F +M+     + P+ 
Sbjct: 457 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 516

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY--GCMVDLLGRAGHLNEALEV 507
            T   +L AC H   +  G++  A +   H  E + A++   C++D+  + G ++ A  V
Sbjct: 517 YTISCILMACAHLAAIRIGKQIHAYVLRHHRYE-SSAYFVANCLIDMYSKCGDVDTARHV 575

Query: 508 IKNMPMKPNSIVWGALLGACRVH 530
             +M  K ++I W +++    +H
Sbjct: 576 FDSMSQK-SAISWTSMMTGYGMH 597



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 160/358 (44%), Gaps = 25/358 (6%)

Query: 12  TLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLT----------NPTVQNKLVTFC 58
           +L     +IS +  C S+    Q   IH+ ++K  LLT          +  V N L+   
Sbjct: 397 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 456

Query: 59  CSEKGDMKYACKVFRKIP--RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS--DVRPD 114
            S+    K A  +F  IP    +V  W  MI G+++     + + ++++M+     V P+
Sbjct: 457 -SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPN 515

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFG-FDSSV-FVQNALISTYCLCGEVDMARGI 172
            YT   +L       A+  GK++H +VL+   ++SS  FV N LI  Y  CG+VD AR +
Sbjct: 516 AYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHV 575

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           FD   +   ++W +M +GY    +  E   +F +M + G +P  +T ++VL AC+    +
Sbjct: 576 FDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMV 635

Query: 233 DVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVT 290
           D G      +  +  + P         D+ A  G +  A     ++      + W A+++
Sbjct: 636 DQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLS 695

Query: 291 GYINRGQVDMARQYFDQMPERDYV---LWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                  V++A    +++ E +      +T + + Y    R+++   +   M+ S I+
Sbjct: 696 ACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 753


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/708 (35%), Positives = 397/708 (56%), Gaps = 21/708 (2%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTV--QNKLVTFCCSEKGDMKYACKVFR 73
           ET L+     C  +    ++ SQ      +  PT+  +N ++       G + +A + F 
Sbjct: 176 ETALVDMFVRCGYVDFASRLFSQ------IERPTIFCRNSMLAGYAKLYG-IDHAIEYFE 228

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
            +    V  WN MI   S+    +  + + ++M +  VR D+ T+   L    R  ++ +
Sbjct: 229 DMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGW 288

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK+LH  V++       +V +ALI  Y  CG    A+ +F+     + V+W  +  G  +
Sbjct: 289 GKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQ 348

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
            + F ++ +LF +M  + +      +  ++S C    DL +G++ H    +      +++
Sbjct: 349 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 408

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            N+L  +YA CG++  A  +F ++  +D++SWT+++T Y   G +  AR++FD M  R+ 
Sbjct: 409 SNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNA 468

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKT 372
           + W AM+  Y++     + L ++  M +  ++ PD  T V++   CA++GA +LG+ +  
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIG 528

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           +  K  +  ++ V NA I MY KCG + +AQ++F  +  KD  +W AMI G + +G G +
Sbjct: 529 HTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQ 588

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +   F  ML     PD ++YV VLS C+H+G+V EG+ YF  MT  HGI P   H+ CMV
Sbjct: 589 AAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMV 648

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGRAGHL EA ++I  MPMKP + VWGALL AC++H + E+AE+AAK + ELD  +  
Sbjct: 649 DLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSG 708

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            Y+LL  IY+   + D+  ++R+++ D+GIKK PG S +E+   VH F A D SHPQ   
Sbjct: 709 SYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIA 768

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I  K+DE+   +  +GY+             +  R+   HSEKLA+AFG++S    + I 
Sbjct: 769 IRNKMDELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLPAWMPIH 817

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I+KNLR+C DCH + KL+S V DRE ++RD  RFHHFK GSCSC DYW
Sbjct: 818 IMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 199/430 (46%), Gaps = 35/430 (8%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR------------------- 170
           A+   + LH  ++  G  S+VF+QN L+  Y  CG +  AR                   
Sbjct: 19  ALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMM 78

Query: 171 -------------GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTS 216
                         +FD   + DV +WN + SGY + ++F +  + F  M R G  LP +
Sbjct: 79  NGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNA 138

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T   V+ +C  L   ++  +      +     +  +E AL DM+  CG + FA  +F  
Sbjct: 139 FTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQ 198

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           I+   +    +++ GY     +D A +YF+ M ERD V W  MI    +  R REAL L 
Sbjct: 199 IERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLV 258

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            EM    +R D  T  S LTACA L +L  G+ +   + ++  + D +V +ALI++Y KC
Sbjct: 259 VEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKC 318

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G  ++A+RVF  +  ++  +WT +I G        KS+++F+QM    +  D+     ++
Sbjct: 319 GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLI 378

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           S C +   +  GR+  + + ++ G          ++ L  + G L  A  V  +M  + +
Sbjct: 379 SGCFNRMDLCLGRQLHS-LCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER-D 436

Query: 517 SIVWGALLGA 526
            + W +++ A
Sbjct: 437 IVSWTSMITA 446



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 144/603 (23%), Positives = 258/603 (42%), Gaps = 110/603 (18%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIK-LGLLTNPTVQNKLVTFCCSEKGD 64
           ++   S +  +  L+    +C ++   +++    IK   ++T+  + N       +++G 
Sbjct: 32  TVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGY-----AKQGS 86

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLK 123
           +  A ++F ++PR  V  WNT++ GY +     +G+  ++ M +S D  P+ +TF  ++K
Sbjct: 87  LSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMK 146

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD--------- 174
                   E   +L     KF F     V+ AL+  +  CG VD A  +F          
Sbjct: 147 SCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFC 206

Query: 175 -----------------VSY-----KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
                            + Y     + DVV+WN M +   +  +  E   L  EM RKGV
Sbjct: 207 RNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV 266

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL--ILENALTDMYAACGEMGFA 270
              S T    L+ACA+L  L  GK+ H   K  + +P +   + +AL ++YA CG    A
Sbjct: 267 RLDSTTYTSSLTACARLFSLGWGKQLH--AKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
             +F ++++++ +SW                               T +I G L+   F 
Sbjct: 325 KRVFNSLQDRNSVSW-------------------------------TVLIGGSLQYECFS 353

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           +++ LF +M+   +  D+F + ++++ C N   L LG  + +   K+     I V N+LI
Sbjct: 354 KSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLI 413

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV----------------GLAI-------- 426
            +Y KCGD++ A+ VF  M  +D  +WT+MI                 G+A         
Sbjct: 414 SLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNA 473

Query: 427 -------NGHGDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
                  +G  +  L M+S ML +  + PD VTYV +   C   G    G +     T++
Sbjct: 474 MLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGH-TVK 532

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
            G+  N +     + +  + G ++EA ++   +  K + + W A++     H    M + 
Sbjct: 533 AGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGK-DVVSWNAMITGYSQH---GMGKQ 588

Query: 539 AAK 541
           AAK
Sbjct: 589 AAK 591



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 144/339 (42%), Gaps = 37/339 (10%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF-GNIKNK 280
            L +C     L   +  H  +    +   + L+N L   Y +CG +  A  +   +IK  
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP 69

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +VI+   ++ GY  +G +  A + FD+MP RD   W  ++ GY +  RF + L  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 341 TS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
            S +  P+ FT   ++ +C  LG  EL   +     K     D  V  AL+DM+ +CG V
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 400 EKAQRVFRE-------------------------------MLRKDKFTWTAMIVGLAING 428
           + A R+F +                               M  +D  +W  MI  L+ +G
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ-HGIEPNEAH 487
              ++L +  +M R  +  D  TY   L+AC     +  G++  A +      I+P  A 
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA- 308

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
              +++L  + G   EA  V  ++  + NS+ W  L+G 
Sbjct: 309 -SALIELYAKCGSFKEAKRVFNSLQDR-NSVSWTVLIGG 345


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/655 (36%), Positives = 380/655 (58%), Gaps = 36/655 (5%)

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           R + +  V  WN++I   +R       +L +  M K  + P   +FP  +K  +    + 
Sbjct: 34  RYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIF 93

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            GK+ H     FG+ S +FV +ALI  Y  CG+++ AR +FD   K D+V+W +M  GY 
Sbjct: 94  SGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYD 153

Query: 193 RVKQFDETRKLFGEM------ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
                 +   LF ++      +   +   S+ +V V+SAC+++    + +  H +V +  
Sbjct: 154 LNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRG 213

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
               + + N L D YA  GE G A+                             AR+ FD
Sbjct: 214 FDRGVSVGNTLLDAYAKGGEGGVAV-----------------------------ARKIFD 244

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP-DEFTIVSILTACANLGALE 365
           Q+ ++D V + +++  Y +     EA  +FR +  + +   +  T+ ++L A ++ GAL 
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALR 304

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
           +G+ +   + +  +++D+ VG ++IDMYCKCG VE A++ F  M  K+  +WTAMI G  
Sbjct: 305 IGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYG 364

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           ++GH  K+L++F  M+ + + P+ +T+V VL+AC+H G+  EG  +F  M  + G+EP  
Sbjct: 365 MHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGL 424

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HYGCMVDLLGRAG L +A ++I+ M MKP+SI+W +LL ACR+H++ E+AE++  ++ E
Sbjct: 425 EHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFE 484

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           LD  N   Y+LL +IYA   RW +   +R ++ +RG+ K PG S++E+NG VH F+ GD+
Sbjct: 485 LDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDE 544

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
            HPQ ++IY  L E+   L   GY+ + S V  DV EE+KE  +  HSEKLA+AFG++++
Sbjct: 545 EHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNT 604

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            PG T+ +VKNLR+C DCH + KL+S + DRE +VRD  RFHHFK G CSC DYW
Sbjct: 605 VPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 200/441 (45%), Gaps = 46/441 (10%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTF 57
           + + SS+   S     +     I+ C S+  +   KQ H Q    G  ++  V + L+  
Sbjct: 61  LLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVM 120

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
             S  G ++ A KVF +IP+  +  W +MI+GY    +  + V ++ D+L  +   D+  
Sbjct: 121 Y-STCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAM 179

Query: 118 F------PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE--VDMA 169
           F        ++   +R  A    + +H  V+K GFD  V V N L+  Y   GE  V +A
Sbjct: 180 FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP-TSVTIVLVLSACAK 228
           R IFD     D V++N++ S Y +    +E  ++F  + +  V+   ++T+  VL A + 
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSH 299

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
              L +GK  H  V    +  ++I+  ++ DMY  C                        
Sbjct: 300 SGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC------------------------ 335

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
                  G+V+ AR+ FD+M  ++   WTAMI GY       +AL LF  M  S +RP+ 
Sbjct: 336 -------GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNY 388

Query: 349 FTIVSILTACANLGA-LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407
            T VS+L AC++ G  +E   W      +  V+  +     ++D+  + G ++KA  + +
Sbjct: 389 ITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQ 448

Query: 408 EM-LRKDKFTWTAMIVGLAIN 427
            M ++ D   W++++    I+
Sbjct: 449 RMKMKPDSIIWSSLLAACRIH 469



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 133/301 (44%), Gaps = 7/301 (2%)

Query: 19  LISPIETCESMHQ---LKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRK 74
           L+S I  C  +      + IHS  IK G     +V N L+  +    +G +  A K+F +
Sbjct: 186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN-YTFPFLLKGFTRDIAVEF 133
           I       +N+++  Y++         ++  ++K+ V   N  T   +L   +   A+  
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK +H  V++ G +  V V  ++I  YC CG V+ AR  FD     +V +W AM +GY  
Sbjct: 306 GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGM 365

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLI 252
                +  +LF  M   GV P  +T V VL+AC+       G R    +K    + P L 
Sbjct: 366 HGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLE 425

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPER 311
               + D+    G +  A ++   +K K D I W++++        V++A     ++ E 
Sbjct: 426 HYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFEL 485

Query: 312 D 312
           D
Sbjct: 486 D 486


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/716 (35%), Positives = 386/716 (53%), Gaps = 50/716 (6%)

Query: 48  PTVQNKLVTFCCSEKGDMKYACKVFRKIP--RPSVCLWNTMIKGYSRIDSHKNGVLIYLD 105
           P+    LV    +  G ++ A   F  +P  R    L N M+  ++R       V ++  
Sbjct: 92  PSPATSLVA-AQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHA 150

Query: 106 MLKS-DVRPDNYTFPFLLK--GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           +L S  +RPD+Y+F  L+   G   ++A     +LHC VLK G  + + V NALI+ Y  
Sbjct: 151 LLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMK 210

Query: 163 C----------------------------------GEVDMARGIFD-VSYKDDVVTWNAM 187
           C                                  G+V+ AR +F+ V  K DVV WNAM
Sbjct: 211 CDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVV-WNAM 269

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            SGY +     +  +LF  M  + V     T   VLSACA       GK  H  +   ++
Sbjct: 270 ISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQI--IRL 327

Query: 248 VPNLILE------NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
            PN + E      NAL  +Y+  G++  A  IF  +  KDV+SW  I++GYI+ G +D A
Sbjct: 328 QPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKA 387

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
            + F  MP ++ + W  M+ GY+      +AL LF +M+  +++P ++T    + AC  L
Sbjct: 388 VEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGEL 447

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
           GAL+ G  +  ++ +   +     GNAL+ MY KCG V  A+ VF  M   D  +W AMI
Sbjct: 448 GALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMI 507

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
             L  +GHG ++L++F QM+   I PD ++++ +L+AC H G+VDEG  YF  M    GI
Sbjct: 508 SALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGI 567

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
            P E HY  ++DLLGR+G + EA ++IK MP +P   +W A+L  CR + D E    AA 
Sbjct: 568 SPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAAD 627

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           Q+  + P ++  Y+LL N Y+A  RW +   +R+++ DRG+KK PGCS IE+   +H F+
Sbjct: 628 QLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFL 687

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
            GD  HP+ +E+Y  L+ + + ++ +GY+PD   V  D+   +KE  ++ HSEKLA+ FG
Sbjct: 688 VGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFG 747

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           L+   PG T+ ++KNLR+C DCH     +S    RE++VRD  RFHHFK G CSC+
Sbjct: 748 LLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCE 803


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/761 (35%), Positives = 418/761 (54%), Gaps = 64/761 (8%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L++      ++ QL+Q H   +   L ++    + L+  C        Y   +F   P P
Sbjct: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSP 63

Query: 79  SVCLWNTMIKGYSRIDSHKNGV---------------LIYLDMLKSDVRPDNYTFPFLLK 123
              +++ M+K YSR+ +H   V                +Y+ ++K   +  N    ++LK
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYVLK 123

Query: 124 ------GFTR-------------DIAVEFGKELHCHVL-----------KFGFDS----- 148
                  F R             D+A    +++    L           K G ++     
Sbjct: 124 LGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVL 183

Query: 149 -------SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
                  ++    ++++ Y   G+++ AR  FD   +  VV+WNAM S Y + +   E  
Sbjct: 184 FNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEAL 243

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
            LF +M  +G+ P   T V+ +S+C+ + D  +     R + +  IV N  ++ AL DM+
Sbjct: 244 NLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMH 303

Query: 262 AACGEMGFALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           A  G +  A  IF  +   ++ ++W  +++ Y   G++ +AR+ FD MP+RD V W +MI
Sbjct: 304 AKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMI 363

Query: 321 DGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
            GY +      ++ LF+EM +  +I+PDE TI S+L+AC ++GAL+L  WV   + +  +
Sbjct: 364 AGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNI 423

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
           K  I   N+LI MY KCG V  A R+F+ M  +D  ++  +I G A NGHG +++ +   
Sbjct: 424 KLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLT 483

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M    I PD VTY+GVL+AC+H G+++EG+  F   +IQ    P   HY CMVDLLGRAG
Sbjct: 484 MEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFK--SIQ---APTVDHYACMVDLLGRAG 538

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
            L+EA  +I++MPMKP++ V+G+LL A R+H+   + E+AA ++ EL+P N   YVLL N
Sbjct: 539 ELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSN 598

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           IYA+  RW++ + +R+M+   G+KK+ G S +E  G VH+F  GD+SH Q+K+IY  L E
Sbjct: 599 IYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAE 658

Query: 620 MTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
           +   +K VG++ D S    DV EE+KE  +  HSEKLA+ F L+ S  G TIR+VKNLR+
Sbjct: 659 LERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRI 718

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C+DCH   K++S +  RE++VRD  RFH F  G CSC DYW
Sbjct: 719 CLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/761 (35%), Positives = 418/761 (54%), Gaps = 64/761 (8%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L++      ++ QL+Q H   +   L ++    + L+  C        Y   +F   P P
Sbjct: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSP 63

Query: 79  SVCLWNTMIKGYSRIDSHKNGV---------------LIYLDMLKSDVRPDNYTFPFLLK 123
              +++ M+K YSR+ +H   V                +Y+ ++K   +  N    ++LK
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVLK 123

Query: 124 ------GFTR-------------DIAVEFGKELHCHVL-----------KFGFDS----- 148
                  F R             D+A    +++    L           K G ++     
Sbjct: 124 LGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVL 183

Query: 149 -------SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
                  ++    ++++ Y   G+++ AR  FD   +  VV+WNAM S Y + +   E  
Sbjct: 184 FNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEAL 243

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
            LF +M  +G+ P   T V+ +S+C+ + D  +     R + +  IV N  ++ AL DM+
Sbjct: 244 NLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMH 303

Query: 262 AACGEMGFALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           A  G +  A  IF  +   ++ ++W  +++ Y   G++ +AR+ FD MP+RD V W +MI
Sbjct: 304 AKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMI 363

Query: 321 DGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
            GY +      ++ LF+EM +  +I+PDE TI S+L+AC ++GAL+L  WV   + +  +
Sbjct: 364 AGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNI 423

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
           K  I   N+LI MY KCG V  A R+F+ M  +D  ++  +I G A NGHG +++ +   
Sbjct: 424 KLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLT 483

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M    I PD VTY+GVL+AC+H G+++EG+  F   +IQ    P   HY CMVDLLGRAG
Sbjct: 484 MEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFK--SIQ---APTVDHYACMVDLLGRAG 538

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
            L+EA  +I++MPMKP++ V+G+LL A R+H+   + E+AA ++ EL+P N   YVLL N
Sbjct: 539 ELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSN 598

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           IYA+  RW++ + +R+M+   G+KK+ G S +E  G VH+F  GD+SH Q+K+IY  L E
Sbjct: 599 IYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAE 658

Query: 620 MTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
           +   +K VG++ D S    DV EE+KE  +  HSEKLA+ F L+ S  G TIR+VKNLR+
Sbjct: 659 LERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRI 718

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C+DCH   K++S +  RE++VRD  RFH F  G CSC DYW
Sbjct: 719 CLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 246/641 (38%), Positives = 371/641 (57%), Gaps = 41/641 (6%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN  ++  +        + +Y  ML+S   PD ++FPF+LK          G++LHCHV+
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV--VTWNAMFSGYKRVKQFDET 200
           + G ++  FV  ALIS YC CG V+ AR +F+ +       V +NA+ SGY    +  + 
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDA 137

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             +F  M+  GV   SVTI+ ++  C   + L +G+  H    +      + + N+   M
Sbjct: 138 AFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITM 197

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           Y  CG                                V+  R+ FD+MP +  + W A+I
Sbjct: 198 YMKCG-------------------------------SVESGRRLFDEMPVKGLITWNAVI 226

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            GY +     + L LF +M++S + PD FT+VS+L++CA+LGA ++G+ V   ++ N   
Sbjct: 227 SGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFA 286

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            ++F+ NALI MY +CG++ KA+ VF  M  K   +WTAMI    ++G G+  L +F  M
Sbjct: 287 PNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDM 346

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           ++  I PD   +V VLSAC+H+G+ D+G E F  M  ++ +EP   HY C+VDLLGRAG 
Sbjct: 347 IKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 406

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L+EA+E I +MP++P+  VWGALLGAC++H++ +MAE+A  +++E +P N   YVL+ NI
Sbjct: 407 LDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNI 466

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           Y+     +    +R M+ +R  +K PG S +E  G VH F+AGD+SH QT+E++  LDE+
Sbjct: 467 YSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDEL 526

Query: 621 -TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
            TS ++  G M        D GEE       +HSE+LA+AFG+++S PG  I ++KNLR+
Sbjct: 527 ETSVMELAGNMD------CDRGEE-VSSTTREHSERLAIAFGILNSIPGTEILVIKNLRV 579

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C DCH   KLVS + DR  +VRD +RFH+FK G CSCKDYW
Sbjct: 580 CEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 204/445 (45%), Gaps = 48/445 (10%)

Query: 18  PLISPIETCESMH---QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRK 74
           P I  +++C S+      +Q+H   I+ G    P V   L++  C + G ++ A KVF +
Sbjct: 54  PFI--LKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYC-KCGLVEDARKVFEE 110

Query: 75  IPRPS---VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
            P  S   VC +N +I GY+      +   ++  M ++ V  D+ T   L+   T    +
Sbjct: 111 NPHSSQLGVC-YNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYL 169

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             G+ LH   +K G  S V V N+ I+ Y  CG V+  R +FD      ++TWNA+ SGY
Sbjct: 170 WLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGY 229

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            +     +  +LF +M+  GV P   T+V VLS+CA L    +G+     V+     PN+
Sbjct: 230 SQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNV 289

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            L NAL  MYA CG +  A  +F  +  K ++SWTA++  Y   G  +            
Sbjct: 290 FLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGET----------- 338

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWV 370
                                LTLF +M    IRPD    V +L+AC++ G  + G E  
Sbjct: 339 --------------------GLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELF 378

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           +    + K++      + L+D+  + G +++A      M +  D   W A++    I+  
Sbjct: 379 RAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIH-- 436

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVG 454
             K++DM +++  A +I  E   +G
Sbjct: 437 --KNVDM-AELAFAKVIEFEPMNIG 458



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 181/409 (44%), Gaps = 39/409 (9%)

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WN           F E+  L+  M R G  P + +   +L +CA L     G++ H +V
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
                            +   C    F L              TA+++ Y   G V+ AR
Sbjct: 77  -----------------IRGGCEAEPFVL--------------TALISMYCKCGLVEDAR 105

Query: 303 QYFDQMPERDY--VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           + F++ P      V + A+I GY   ++  +A  +FR M+ + +  D  TI+ ++  C  
Sbjct: 106 KVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTV 165

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
              L LG  +     K    +++ V N+ I MY KCG VE  +R+F EM  K   TW A+
Sbjct: 166 PEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAV 225

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I G + NG     L++F QM  + + PD  T V VLS+C H G    G+E   ++   +G
Sbjct: 226 ISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQE-VGELVEANG 284

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
             PN      ++ +  R G+L +A  V   MP+K + + W A++G   +H   E      
Sbjct: 285 FAPNVFLSNALISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMHGMGETGLTLF 343

Query: 541 KQILE--LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPG 587
             +++  + PD  AV+V++ +  +     D   EL +  + R  K  PG
Sbjct: 344 DDMIKRGIRPDG-AVFVMVLSACSHSGLTDKGLELFRA-MKREYKLEPG 390


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/621 (40%), Positives = 367/621 (59%), Gaps = 11/621 (1%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-S 60
            SN  IS P+ L         +++C SM QLKQI +     GL+      ++L+ FC  S
Sbjct: 46  LSNVFISNPTLLI--------LQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALS 97

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           + GD+ YA  +F +   P+   WNTMIKGY + +    G   +  M+++    D+ +F F
Sbjct: 98  DSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVF 157

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
            LK   +      G  +H  + K GFDS +FVQN LI  Y   G +  AR +FD S   D
Sbjct: 158 ALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKD 217

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           VVTW  M +GY R    DE   LF  M    V P  VT++ +LSAC++  D ++GK  H 
Sbjct: 218 VVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHE 277

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           +++   I  +L L NA+ DMY  CG +  A EIF N++ +DV SWT+++ GY   G +  
Sbjct: 278 HIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGS 337

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACA 359
           AR+ FD+MPER+ V W AMI GY + ++  EAL LF  M     + P E T+V +L+A  
Sbjct: 338 ARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASG 397

Query: 360 NLGALELGEWVK-TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
            LG LE+G+ +   +++K  ++  + + NA++DMY KCG ++ A ++F  M  K+  +W 
Sbjct: 398 QLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWN 457

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           +MI   A  GH  K+L +F QM+ + + PD +T++GVLSAC++ G V EG+ +F  M   
Sbjct: 458 SMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENC 517

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
            G+EP   HY CMVDLL R G L EA E+I  MPM+ +   WGALL ACR H + EMA++
Sbjct: 518 FGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKL 577

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           A +++LELDP++  +Y LL NI A   +W + R +R+M+ +RG+KK PG S+IE+ G  H
Sbjct: 578 AGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFH 637

Query: 599 EFVAGDKSHPQTKEIYLKLDE 619
           EF+  D SH ++ EIY  ++E
Sbjct: 638 EFLVADTSHTRSSEIYRVVNE 658


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/589 (40%), Positives = 355/589 (60%), Gaps = 34/589 (5%)

Query: 135 KELHCHVLKFGF--DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H   ++ G    +  F ++ + +   L   +  A  IF+     ++ TWN M  G+ 
Sbjct: 52  KQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFA 111

Query: 193 RVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
             +      +LF +M     +LP + T   +  A AKL D+ +G+  H  V         
Sbjct: 112 ESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLR 171

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            ++N+L  MY+     GFA                            + A Q F+ M  R
Sbjct: 172 FVQNSLVHMYSV---FGFA----------------------------ESAYQVFEIMSYR 200

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D V W ++I+G+       EALTL+REM +  + PD FT+VS+L+AC  LGAL LGE V 
Sbjct: 201 DRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVH 260

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            Y+ K  +  +    NAL+D+Y KCG+   AQ+VF EM  +   +WT++IVGLA+NG G+
Sbjct: 261 MYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGN 320

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L +F ++ R  + P E+T+VGVL AC+H GM+DEG  YF  M  ++GI P   H+GCM
Sbjct: 321 EALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCM 380

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLL RAG + +A + I+NMP+ PN+++W  LLGAC +H   E+ E+A  +I  L+  + 
Sbjct: 381 VDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHS 440

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             +VLL N+YA+  RW + + +R+++L +G+KKTPG S++E+   V+EF+ GD+SHPQ++
Sbjct: 441 GDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSE 500

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           E Y  L ++T  LK  GY+P    V  D+ EE+KE A+  H+EK+A+AF L+++ PG  I
Sbjct: 501 ETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPI 560

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI+KNLR+C DCH   KL+S V++RE+IVRD++RFHHFK GSCSCKDYW
Sbjct: 561 RIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 209/416 (50%), Gaps = 38/416 (9%)

Query: 20  ISPIETC-ESMHQLKQIHSQTIKLGLL-TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           IS ++ C  S  +LKQIH+ +I+ G+   NP     L+    S    M +A ++F +I  
Sbjct: 38  ISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQA 97

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDM-LKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           P++  WNTMI+G++  ++    V ++  M   S + PD +TFPFL K   + + V  G+ 
Sbjct: 98  PNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEG 157

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  V++ GFDS  FVQN+L+  Y + G  + A  +F++    D V WN++ +G+     
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGM 217

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            +E   L+ EM  +GV P   T+V +LSAC +L  L +G+R H Y+ +  +V N    NA
Sbjct: 218 PNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNA 277

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L D+Y+ CG    A ++F  ++ + V+SWT+++ G                         
Sbjct: 278 LLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVG------------------------- 312

Query: 317 TAMIDGYLRVNRF-REALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYI 374
                  L VN    EAL LF E++   ++P E T V +L AC++ G L+ G  + +   
Sbjct: 313 -------LAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMK 365

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           ++  +   I     ++D+ C+ G V  A    R M +  +   W  ++    I+GH
Sbjct: 366 EEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGH 421



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IHS  ++ G  +   VQN LV    S  G  + A +VF  +       WN++I G++   
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMY-SVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNG 216

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
                + +Y +M    V PD +T   LL       A+  G+ +H +++K G   +    N
Sbjct: 217 MPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASN 276

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           AL+  Y  CG    A+ +FD   +  VV+W ++  G       +E  KLFGE+ER+G+ P
Sbjct: 277 ALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKP 336

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEI 273
           + +T V VL AC+    LD G    R +K E  I+P +     + D+    G++G A + 
Sbjct: 337 SEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDY 396

Query: 274 FGNIK-NKDVISWTAI-----VTGYINRGQVDMAR-QYFDQMPERDYVLWTAM 319
             N+    + + W  +     + G++  G+V  A  Q  +Q    D+VL + +
Sbjct: 397 IRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNL 449


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 255/695 (36%), Positives = 391/695 (56%), Gaps = 71/695 (10%)

Query: 29  MHQLKQIHSQTIKLGLLT-NPTVQNKL--VTFCCSEKGDMKYACKVFRKIPRPSVCLWNT 85
           ++ LK++H + +    L  NP+V  KL  V   C E G  ++   +F +I   +V  +N 
Sbjct: 34  INTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARH---IFDEITDKNVVFFNV 90

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           MI+ Y     +K+ +L+Y  M      PD YT+P +LK  +R  ++  G ++H  VLK G
Sbjct: 91  MIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIG 150

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
            D +++V N LI+ Y  C  +  A+ + D     DVV+WN+M S Y +  +F++  +L  
Sbjct: 151 LDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCR 210

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           EME   + P   T+  +L A                      V N   +N L        
Sbjct: 211 EMEALNLKPNDCTMASLLPA----------------------VTNTTSDNVL-------- 240

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
              +  E+F  +  K VISW  ++  Y+N           + MP                
Sbjct: 241 ---YVKEMFLKLTKKSVISWNVMIAMYVN-----------NSMP---------------- 270

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
               +EA+ L+ +M+ + + PD  +IVS+L A  +L AL LG  V  + ++ K+  ++ +
Sbjct: 271 ----KEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLL 326

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            NALIDMY KCG +  A+ VF +M  +D  +WT++I      G G  ++ +F++M  + +
Sbjct: 327 ENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGL 386

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
            PD + +V VL+AC+H G++D+GR YF ++  + GI P   H+ C+VDLLGRAG ++EA 
Sbjct: 387 NPDSIAFVSVLAACSHAGLLDDGRYYF-NLMAECGITPKLEHFACVVDLLGRAGKIDEAY 445

Query: 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
             I+ MP++P+  VWG LL ACRV+ +  +  +AA ++L L+P++   YVLL NIYA   
Sbjct: 446 GFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAG 505

Query: 566 RWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625
           RW +   +R ++  +GIKK PG S +E+N  VH F+AGD SHPQ+K+IY +LD +   +K
Sbjct: 506 RWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMK 565

Query: 626 FVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHR 685
            +GYMP+      DV EEDKE  +  HSEKLA+AF +I++ PG  IR+ KNLR+C DCH 
Sbjct: 566 ELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHV 625

Query: 686 MAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            AKL+S + +RE+I+RD  RFHHF+ G CSC DYW
Sbjct: 626 AAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/729 (35%), Positives = 397/729 (54%), Gaps = 74/729 (10%)

Query: 43  GLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS---VCLWNTMIKGYSRIDSHKNG 99
           G  +N  + N LV    S  G ++ A  +F +I +     V  WN+++  + +  +    
Sbjct: 192 GFESNVFICNALVAMY-SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTA 250

Query: 100 VLIYLDML------KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           + ++  M        ++ R D  +   +L       AV   KE+H + ++ G    VFV 
Sbjct: 251 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVG 310

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK--- 210
           NALI  Y  CG ++ A  +F++    DVV+WNAM +GY +   F+   +LF  M ++   
Sbjct: 311 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIP 370

Query: 211 --------------------------------GVLPTSVTIVLVLSACAKLKDLDVGKRA 238
                                           G LP  VTI+ VLSACA L     G   
Sbjct: 371 LDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI 430

Query: 239 HRY-VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
           H Y +K C     L L+N                  FG  +++D++ + A++  Y     
Sbjct: 431 HAYSLKNCL----LTLDND-----------------FGG-EDEDLMVYNALIDMYSKCRS 468

Query: 298 VDMARQYFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFREM--QTSNIRPDEFTIVS 353
              AR  FD +P  ER+ V WT MI G+ +     +AL LF EM  +   + P+ +TI  
Sbjct: 469 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 528

Query: 354 ILTACANLGALELGEWVKTYIDKNK--VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           IL ACA+L A+ +G+ +  Y+ ++     +  FV N LIDMY KCGDV+ A+ VF  M +
Sbjct: 529 ILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ 588

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           K   +WT+M+ G  ++G G ++LD+F +M +A  +PD++T++ VL AC+H GMVD+G  Y
Sbjct: 589 KSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSY 648

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531
           F  M+  +G+ P   HY C +DLL R+G L++A   +K+MPM+P ++VW ALL ACRVH 
Sbjct: 649 FDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHS 708

Query: 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMI 591
           + E+AE A  +++E++ +N+  Y L+ NIYA   RW +   +R ++   GIKK PGCS +
Sbjct: 709 NVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 768

Query: 592 EMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQ 651
           +       F  GD+SHP + +IY  L+ +   +K +GY+P+ +    DV EE+K   + +
Sbjct: 769 QGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVE 828

Query: 652 HSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH 711
           HSEKLA+A+GL+++ PG  IRI KNLR+C DCH     +S + D E++VRD +RFHHFK+
Sbjct: 829 HSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKN 888

Query: 712 GSCSCKDYW 720
           GSCSC  YW
Sbjct: 889 GSCSCGGYW 897



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 170/563 (30%), Positives = 276/563 (49%), Gaps = 60/563 (10%)

Query: 21  SPIETCESMHQLKQIHSQTIKLG---------------LLTNPTVQNK-LVTFCCSEK-- 62
           S ++ C+S + + QIH Q I  G               L + P +  + L T   +    
Sbjct: 49  SLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLA 108

Query: 63  -GDMKYACKVFRKI-PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
            G   YA  V  ++ P P+V  WN +I+ + +     + + +   ML++  RPD++T P 
Sbjct: 109 CGATDYALLVLERVTPSPAV-WWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPH 167

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK-- 178
           +LK      +   G   H  +   GF+S+VF+ NAL++ Y  CG ++ A  IFD   +  
Sbjct: 168 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 227

Query: 179 -DDVVTWNAMFSGYKRVKQFDETRKLFGEM----------ERKGVLPTSVTIVLVLSACA 227
            DDV++WN++ S + +         LF +M          ER  +    ++IV +L AC 
Sbjct: 228 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI----ISIVNILPACG 283

Query: 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
            LK +   K  H         P++ + NAL D YA CG M  A+++F  ++ KDV+SW A
Sbjct: 284 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 343

Query: 288 IVTGYINRGQVDMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           +V GY   G  + A + F  M +     D V WTA+I GY +     EAL LFR+M  S 
Sbjct: 344 MVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG 403

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV----------KNDIFVGNALIDMY 393
             P+  TI+S+L+ACA+LGA   G  +  Y  KN +            D+ V NALIDMY
Sbjct: 404 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 463

Query: 394 CKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRA--SIIPDE 449
            KC   + A+ +F ++  +++   TWT MI G A  G  + +L +F +M+     + P+ 
Sbjct: 464 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 523

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY--GCMVDLLGRAGHLNEALEV 507
            T   +L AC H   +  G++  A +   H  E + A++   C++D+  + G ++ A  V
Sbjct: 524 YTISCILMACAHLAAIRIGKQIHAYVLRHHRYE-SSAYFVANCLIDMYSKCGDVDTARHV 582

Query: 508 IKNMPMKPNSIVWGALLGACRVH 530
             +M  K ++I W +++    +H
Sbjct: 583 FDSMSQK-SAISWTSMMTGYGMH 604



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 160/358 (44%), Gaps = 25/358 (6%)

Query: 12  TLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLT----------NPTVQNKLVTFC 58
           +L     +IS +  C S+    Q   IH+ ++K  LLT          +  V N L+   
Sbjct: 404 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 463

Query: 59  CSEKGDMKYACKVFRKIP--RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS--DVRPD 114
            S+    K A  +F  IP    +V  W  MI G+++     + + ++++M+     V P+
Sbjct: 464 -SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPN 522

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFG-FDSSV-FVQNALISTYCLCGEVDMARGI 172
            YT   +L       A+  GK++H +VL+   ++SS  FV N LI  Y  CG+VD AR +
Sbjct: 523 AYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHV 582

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           FD   +   ++W +M +GY    +  E   +F +M + G +P  +T ++VL AC+    +
Sbjct: 583 FDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMV 642

Query: 233 DVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVT 290
           D G      +  +  + P         D+ A  G +  A     ++      + W A+++
Sbjct: 643 DQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLS 702

Query: 291 GYINRGQVDMARQYFDQMPERDYV---LWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                  V++A    +++ E +      +T + + Y    R+++   +   M+ S I+
Sbjct: 703 ACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 760


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/606 (38%), Positives = 353/606 (58%), Gaps = 46/606 (7%)

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174
           N+T PF LK            +LH H+LK     S    + + S          A+ IF 
Sbjct: 24  NFTSPFELK------------QLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQ 71

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
           +    +V  WN     +       +   LF  +    + P   T   VL AC++L D+  
Sbjct: 72  LLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRN 131

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           GK  H YV++  +  N+ L+N +  +YA CGE+G A ++F  +  +DVI+W  ++   + 
Sbjct: 132 GKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVK 191

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G  + A + F +MPER+   WT+MI GY +  + +EA+ LF EM+ + + P+E T+V++
Sbjct: 192 MGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAV 251

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           L ACA++G L LG  +  + +++  + +I V N LIDMY KCG +E A R+F  M  +  
Sbjct: 252 LVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTV 311

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +W+AMI GLA +G  + +L +F++M+   + P+ VT++G+L AC+H GMV++GR+YFA 
Sbjct: 312 VSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFAS 371

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           MT  +GI P   HYGCMVDL  RAG L EA E I NMP+ PN +VWGALLG C+VH++ +
Sbjct: 372 MTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVK 431

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           +AE A + + +LDP N+  YV+L NIYA   RW++   +R+++ DRG             
Sbjct: 432 LAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG------------- 478

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
                                  +++   +K  GY+P+ S V LD+ E+ KE+ +Y+HSE
Sbjct: 479 ---------------------TWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSE 517

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           KLA+ FGLI + PG  IRI+KNLR+C DCH   K++S+V  RE++VRD+ RFH FK+GSC
Sbjct: 518 KLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSC 577

Query: 715 SCKDYW 720
           SC DYW
Sbjct: 578 SCGDYW 583



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 209/453 (46%), Gaps = 80/453 (17%)

Query: 20  ISPIETCESMH---------QLKQIHSQTIKLGLLTNPTVQN---KLVTFCCSEKGDMKY 67
           +SP+    S H         +LKQ+H+  +K    TN  + +     V   C+      Y
Sbjct: 10  VSPLHHRPSTHLLHNFTSPFELKQLHAHLLK----TNSPLSSLPLSRVASVCAFNSSFSY 65

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A  +F+ +    V  WNT ++ ++  DS  + + ++  + + D+ PD+YT  F+LK  +R
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN-- 185
            + V  GK +H +V K G  S++F+QN ++  Y LCGE+ +AR +FD   + DV+TWN  
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185

Query: 186 -----------------------------AMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
                                        +M  GY +  +  E   LF EME  G+LP  
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
           VT+V VL ACA + +L +G+R H +        N+ + N L DMY  CG +  A  IF N
Sbjct: 246 VTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDN 305

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           ++ + V+SW+A++ G    G                               R  +AL LF
Sbjct: 306 MEERTVVSWSAMIAGLAAHG-------------------------------RAEDALALF 334

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCK 395
            +M  + ++P+  T + IL AC+++G +E G ++  +      +   I     ++D++ +
Sbjct: 335 NKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSR 394

Query: 396 CGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
            G +++A      M +  +   W A++ G  ++
Sbjct: 395 AGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVH 427



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 91/204 (44%), Gaps = 9/204 (4%)

Query: 13  LTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           L  E  +++ +  C  M  L   ++IH  + + G   N  V N L+     + G ++ AC
Sbjct: 242 LPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYV-KCGCLEDAC 300

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           ++F  +   +V  W+ MI G +     ++ + ++  M+ + V+P+  TF  +L   +   
Sbjct: 301 RIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMG 360

Query: 130 AVEFGKELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARG-IFDVSYKDDVVTWNAM 187
            VE G++    + + +G    +     ++  +   G +  A   I ++    + V W A+
Sbjct: 361 MVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGAL 420

Query: 188 FSG---YKRVKQFDETRKLFGEME 208
             G   +K VK  +E  +   +++
Sbjct: 421 LGGCKVHKNVKLAEEATRHLSKLD 444


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 258/738 (34%), Positives = 399/738 (54%), Gaps = 90/738 (12%)

Query: 43  GLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS---VCLWNTMIKGYSRIDSHKNG 99
           G  +N  V N LV    S  G ++ A  VF +I R     V  WN+++  + +  + +  
Sbjct: 179 GFESNVFVCNALVAMY-SRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTA 237

Query: 100 VLIYLDML------KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           + ++ +M        ++ R D  +   +L       A+   KE+H + ++ G  +  FV 
Sbjct: 238 LDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVC 297

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK--- 210
           NALI TY  CG +  A  +F+V    DVV+WNAM +GY +  +F    +LF  M ++   
Sbjct: 298 NALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIP 357

Query: 211 --------------------------------GVLPTSVTIVLVLSACAKLKDLDVGKRA 238
                                           G  P SVTI+ +LSACA L  L  G   
Sbjct: 358 LDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMET 417

Query: 239 HRY-VKECKI-----------VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWT 286
           H Y +K+C +             +L++ NAL DMY+ C     A  IF +I  +      
Sbjct: 418 HAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRR------ 471

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QTSNI 344
                                  ER+ V WT MI GY +     +AL LF EM  +   +
Sbjct: 472 -----------------------ERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAV 508

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND--IFVGNALIDMYCKCGDVEKA 402
            P+ +TI  IL ACA+L +L +G+ +  Y+ ++        FV N LIDMY KCGDV+ A
Sbjct: 509 APNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTA 568

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           + VF  M ++++ +WT+M+ G  ++G G ++LD+F +M +A  +PD+++++ +L AC+H+
Sbjct: 569 RNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHS 628

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           GMVD+G +YF  M   +G+  +  HY C++DLL R+G L++A + I+ MPM+P++ +W A
Sbjct: 629 GMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVA 688

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL ACRVH + E+AE A  +++ +  +N+  Y L+ NIYA   RW +   +RQ++   GI
Sbjct: 689 LLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGI 748

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK PGCS ++       F  GD+SHP + EIY  L+ +   +K +GY+P+ +    DV +
Sbjct: 749 KKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDD 808

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E+K   + +HSEKLA+A+GL+++ PG  IRI KNLR+C DCH     +S + D E+IVRD
Sbjct: 809 EEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRD 868

Query: 703 KTRFHHFKHGSCSCKDYW 720
            +RFHHFK+GSCSC  YW
Sbjct: 869 SSRFHHFKNGSCSCGGYW 886



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 179/600 (29%), Positives = 287/600 (47%), Gaps = 68/600 (11%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNP--------------------TVQNKLVT 56
           T   S ++ C S++ ++QIH + I  GLL+ P                    ++   +V 
Sbjct: 32  THFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVA 91

Query: 57  --FCCSEKGDMKYACKVF-RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP 113
               C    D   A  V  R +P P+V  WN +++ +         + +   ML++  +P
Sbjct: 92  SYLACGATSD---ALSVLERVVPSPAV-WWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKP 147

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           D++T P+ LK      +   G   H  +   GF+S+VFV NAL++ Y   G ++ A  +F
Sbjct: 148 DHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVF 207

Query: 174 D-VSYK--DDVVTWNAMFSGYKRVKQFDETRKLFGEM----------ERKGVLPTSVTIV 220
           D ++ K  DDV++WN++ + + +         LF EM          ER  +    ++IV
Sbjct: 208 DEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDI----ISIV 263

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            +L ACA LK L   K  H Y        +  + NAL D YA CG M  A+ +F  ++ K
Sbjct: 264 NILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFK 323

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLF 336
           DV+SW A+VTGY   G+   A + F  M +     D + W+A+I GY +    +EAL  F
Sbjct: 324 DVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTF 383

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN------------KVKNDIF 384
           ++M      P+  TI+S+L+ACA+LGAL  G     Y  K                 D+ 
Sbjct: 384 QQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLV 443

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           V NALIDMY KC   + A+ +F  + R+++   TWT MI G A  G  + +L +FS+M+ 
Sbjct: 444 VHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMIS 503

Query: 443 A--SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-CMVDLLGRAG 499
              ++ P+  T   +L AC H   +  G++  A +T  H  E +      C++D+  + G
Sbjct: 504 KPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCG 563

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVH-RDAEMAEMAAK-QILELDPDNEAVYVLL 557
            ++ A  V  +MP K N + W +++    +H R  E  ++  K Q     PD+ +  VLL
Sbjct: 564 DVDTARNVFDSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 195/465 (41%), Gaps = 98/465 (21%)

Query: 19  LISPIETCESMH---QLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRK 74
           +++ +  C S+    Q K+IHS  I+ G   +  V N L+ T+  ++ G MK A  VF  
Sbjct: 262 IVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTY--AKCGSMKDAVNVFNV 319

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD------ 128
           +    V  WN M+ GY++         ++ +M K ++  D  T+  ++ G+ +       
Sbjct: 320 MEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEA 379

Query: 129 -----------------------------IAVEFGKELHCHVLKFGFDS----------- 148
                                         A+  G E H + LK    S           
Sbjct: 380 LDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDG 439

Query: 149 -SVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
             + V NALI  Y  C     AR IF+     + +VVTW  M  GY +    ++  KLF 
Sbjct: 440 EDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFS 499

Query: 206 EMERK--GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI--LENALTDMY 261
           EM  K   V P + TI  +L ACA L  L +GK+ H YV       + +  + N L DMY
Sbjct: 500 EMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMY 559

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           + CG++  A  +F ++  ++ +SWT++++GY   G                         
Sbjct: 560 SKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHG------------------------- 594

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
                 R +EAL +F +MQ +   PD+ + + +L AC++ G ++ G     Y D  +   
Sbjct: 595 ------RGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG---LDYFDIMRSDY 645

Query: 382 DIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            +         +ID+  + G ++KA +  +EM +      W A++
Sbjct: 646 GVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALL 690



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 170/364 (46%), Gaps = 31/364 (8%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLT------------NPTVQN 52
           S P+++T    +IS +  C S+  L Q    H+ ++K  LL+            +  V N
Sbjct: 391 SEPNSVT----IISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHN 446

Query: 53  KLVTFCCSEKGDMKYACKVFRKIPRP--SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD 110
            L+    S+    K A  +F  IPR   +V  W  MI GY++     + + ++ +M+   
Sbjct: 447 ALIDMY-SKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKP 505

Query: 111 --VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG-FDSSV-FVQNALISTYCLCGEV 166
             V P+ YT   +L       ++  GK++H +V +   ++SSV FV N LI  Y  CG+V
Sbjct: 506 YAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDV 565

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
           D AR +FD   K + V+W +M SGY    +  E   +F +M++ G +P  ++ +++L AC
Sbjct: 566 DTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYAC 625

Query: 227 AKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS- 284
           +    +D G      ++ +  ++ +      + D+ A  G +  A +    +  +   + 
Sbjct: 626 SHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAI 685

Query: 285 WTAIVTGYINRGQVDMARQYFDQ---MPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           W A+++       V++A    ++   M   +   +T + + Y    R+++   + + M+ 
Sbjct: 686 WVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKK 745

Query: 342 SNIR 345
           S I+
Sbjct: 746 SGIK 749


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/763 (33%), Positives = 401/763 (52%), Gaps = 77/763 (10%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVT----FCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
           Q+H+  +   L+ +  V N LV     F   ++    +   V     R +V  WNTMI  
Sbjct: 121 QVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVS-WNTMISA 179

Query: 90  YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
           Y + D   + + ++ +M+ S  RP+ + F  ++   T    +E G+++H  V++ G++  
Sbjct: 180 YVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKD 239

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           VF  NAL+  Y   G+++MA  +F+     DVV+WNA  SG           +L  +M+ 
Sbjct: 240 VFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKS 299

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV--------------------------- 242
            G++P   T+  VL ACA     ++G++ H ++                           
Sbjct: 300 SGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDD 359

Query: 243 --KECKIVP--NLILENALTDMYAACGEMGFALEIFGNIKNKDV---------------- 282
             K    +P  +LIL NAL    +  G  G  L +F  ++ + +                
Sbjct: 360 ARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKST 419

Query: 283 ---------------------ISWTAIVTGYINR----GQVDMARQYFDQMPERDYVLWT 317
                                +S + ++ G I+     GQ+D A + F +    D +  T
Sbjct: 420 ASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISST 479

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
            M+    + +   +A+ LF +M    + PD F + S+L AC +L A E G+ V  ++ K 
Sbjct: 480 TMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKR 539

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
           +  +D+F GNAL+  Y KCG +E A   F  +  +   +W+AMI GLA +GHG ++LD+F
Sbjct: 540 QFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLF 599

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
            +ML   + P+ +T   VLSAC H G+VD+ ++YF  M    GI+  E HY CM+D+LGR
Sbjct: 600 HRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGR 659

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
           AG L +A+E++ NMP + N+ VWGALLGA RVHRD E+  MAA+++  L+P+    +VLL
Sbjct: 660 AGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLL 719

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            N YA+   WD   ++R+++ D  +KK P  S +E+   VH F+ GDKSHP T++IY KL
Sbjct: 720 ANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKL 779

Query: 618 DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
            E+   +   GY+P++     DV   +KE  +  HSE+LA+AF LIS+  G  IR+ KNL
Sbjct: 780 AELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNL 839

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R+C DCH   K +S +  RE+I+RD  RFHHF +G+CSC DYW
Sbjct: 840 RICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/492 (27%), Positives = 223/492 (45%), Gaps = 46/492 (9%)

Query: 25  TCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK-VFRKIPRPSVCLW 83
           T  S+     +HS  +K GLL      N L+T     +  +  A + VF +IP P    W
Sbjct: 16  TSRSLFAGAHLHSHLLKSGLLAG--FSNHLLTL--YSRCRLPSAARAVFDEIPDPCHVSW 71

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           ++++  YS     ++ +L +  M    V  + +  P +LK       V FG ++H   + 
Sbjct: 72  SSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPD---VRFGAQVHALAVA 128

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFD----VSYKDDVVTWNAMFSGYKRVKQFDE 199
                 VFV NAL++ Y   G VD AR +FD    V  + + V+WN M S Y +  Q  +
Sbjct: 129 TRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGD 188

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
              +F EM   G  P       V++AC   +DL+ G++ H  V       ++   NAL D
Sbjct: 189 AIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVD 248

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY+  G++  A  +F  +   DV+SW A ++G +  G               D+      
Sbjct: 249 MYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGH--------------DH------ 288

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
                       AL L  +M++S + P+ FT+ S+L ACA  GA  LG  +  ++ K   
Sbjct: 289 -----------RALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVA 337

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
             D FV   L+DMY K G ++ A++VF  M R+D   W A+I G + +G   + L +F +
Sbjct: 338 DFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHR 397

Query: 440 MLRASIIPD--EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           M +  +  D    T   VL +   +  +   R+  A +  + G+  +      ++D   +
Sbjct: 398 MRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHA-LAEKIGLLSDSHVINGLIDSYWK 456

Query: 498 AGHLNEALEVIK 509
            G L+ A++V K
Sbjct: 457 CGQLDYAIKVFK 468


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/684 (36%), Positives = 394/684 (57%), Gaps = 7/684 (1%)

Query: 41  KLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGV 100
           KL     P    KL+  C +  GD+K A  +F KIP P +  W  +I G+++    K  +
Sbjct: 4   KLPANLQPCQSIKLIKTCLNS-GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAI 62

Query: 101 LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY 160
            IY  +L  +VRPD +    + K       +   K++H   ++FGF+  + + NALI  +
Sbjct: 63  DIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMF 122

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
             C  V+ AR +FD     DVV+W +M   Y       +   LF EM   G+   S+T+ 
Sbjct: 123 GKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVS 182

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            +L ACA    + +G+  H ++   ++  N+ + +AL +MYA+   +  A  +F ++ ++
Sbjct: 183 SILPACADY--IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHR 240

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL----WTAMIDGYLRVNRFREALTLF 336
           D++SW  ++T Y    + +     F QM +    L    W A I G ++  +   AL + 
Sbjct: 241 DIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGIL 300

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            +MQ S I+P+  TIVS L  C NL +L  G+ +  Y+ ++    D+ +  AL+ +Y KC
Sbjct: 301 CKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKC 360

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           GD+E ++ VF  M RKD   W  MI+  +++G G +SL +F++ML + + P+ VT++GVL
Sbjct: 361 GDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVL 420

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           S C+H+ + DEG   F  M+ +H I P+  HY CMVD+L RAG L EA + I+ MP++P 
Sbjct: 421 SGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPT 480

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           +  WGALLGACRV+++ E+  +AA Q+ E++PDN   YVLL NI     +W    E+R+M
Sbjct: 481 AAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKM 540

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + D+G+ KTPG S +++   V+ FV GDKS+ Q   IY  LDE+   ++  GY P+   V
Sbjct: 541 MRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFV 600

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             +V +E +E  +  HSE+LA+AFG+++S    T+R+ KNLR+C DCH   KL++ +   
Sbjct: 601 LQNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGM 660

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           ++IVRD  RFHHF+ G C+C D+W
Sbjct: 661 QIIVRDSLRFHHFRDGYCTCNDFW 684


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/430 (51%), Positives = 309/430 (71%), Gaps = 1/430 (0%)

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           Y N G V  A + FD+MPE+D V W ++I+G+    +  EAL L+ EM +  I+PD FTI
Sbjct: 33  YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 92

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           VS+L+ACA +GAL LG+ V  Y+ K  +  ++   N L+D+Y +CG VE+A+ +F EM+ 
Sbjct: 93  VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 152

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA-SIIPDEVTYVGVLSACTHTGMVDEGRE 470
           K+  +WT++IVGLA+NG G +++++F  M     ++P E+T+VG+L AC+H GMV EG E
Sbjct: 153 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 212

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           YF  M  ++ IEP   H+GCMVDLL RAG + +A E IK+MPM+PN ++W  LLGAC VH
Sbjct: 213 YFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVH 272

Query: 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590
            D+++AE A  QIL+L+P++   YVLL N+YA+  RW + +++R+ +L  G+KK PG S+
Sbjct: 273 GDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSL 332

Query: 591 IEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVY 650
           +E+   VHEF+ GDKSHPQ+  IY KL EMT  L+  GY+P IS V++DV EE+KE AV 
Sbjct: 333 VEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVV 392

Query: 651 QHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFK 710
            HSEK+A+AF LIS+     I +VKNLR+C DCH   KLVS VY+RE++VRD++RFHHFK
Sbjct: 393 YHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFK 452

Query: 711 HGSCSCKDYW 720
           +GSCSC+DYW
Sbjct: 453 NGSCSCQDYW 462



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 165/322 (51%), Gaps = 38/322 (11%)

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           V  G+ +H  V++ GF S ++VQN+L+  Y  CG+V  A  +FD   + D+V WN++ +G
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           +    + +E   L+ EM  KG+ P   TIV +LSACAK+  L +GKR H Y+ +  +  N
Sbjct: 64  FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 123

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           L   N L D+YA CG +  A  +F  + +K+ +SWT+++ G                   
Sbjct: 124 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG------------------- 164

Query: 311 RDYVLWTAMIDGYLRVNRF-REALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELG- 367
                        L VN F +EA+ LF+ M+ T  + P E T V IL AC++ G ++ G 
Sbjct: 165 -------------LAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGF 211

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAI 426
           E+ +   ++ K++  I     ++D+  + G V+KA    + M ++ +   W  ++    +
Sbjct: 212 EYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTV 271

Query: 427 NGHGDKSLDMFSQMLRASIIPD 448
             HGD  L  F+++    + P+
Sbjct: 272 --HGDSDLAEFARIQILQLEPN 291



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 148/320 (46%), Gaps = 13/320 (4%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IHS  I+ G  +   VQN L+    +  GD+  A KVF K+P   +  WN++I G++   
Sbjct: 10  IHSVVIRSGFGSLIYVQNSLLHLY-ANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG 68

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
             +  + +Y +M    ++PD +T   LL    +  A+  GK +H +++K G   ++   N
Sbjct: 69  KPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSN 128

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER-KGVL 213
            L+  Y  CG V+ A+ +FD     + V+W ++  G        E  +LF  ME  +G+L
Sbjct: 129 VLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLL 188

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALE 272
           P  +T V +L AC+    +  G    R ++ E KI P +     + D+ A  G++  A E
Sbjct: 189 PCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYE 248

Query: 273 IFGNIK-NKDVISWTAIVTGYINRGQVDMAR----QYFDQMPER--DYVLWTAMIDGYLR 325
              ++    +V+ W  ++      G  D+A     Q     P    DYVL + M   Y  
Sbjct: 249 YIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNM---YAS 305

Query: 326 VNRFREALTLFREMQTSNIR 345
             R+ +   + ++M    ++
Sbjct: 306 EQRWSDVQKIRKQMLRDGVK 325



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 2/164 (1%)

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           +  + LGE + + + ++   + I+V N+L+ +Y  CGDV  A +VF +M  KD   W ++
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I G A NG  +++L ++++M    I PD  T V +LSAC   G +  G+     M I+ G
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVG 119

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           +  N      ++DL  R G + EA  +   M  K NS+ W +L+
Sbjct: 120 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK-NSVSWTSLI 162


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/705 (36%), Positives = 392/705 (55%), Gaps = 40/705 (5%)

Query: 21  SPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S ++TC  +  +   K+IH+  I+ G  ++  V N L+T    + GD+  A  +F K+P+
Sbjct: 203 SVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYV-KCGDISNARMLFDKMPK 261

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
                WN MI GY        G+ ++  M +  V PD  T   +            G+ +
Sbjct: 262 RDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGV 321

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H +V+K  F   + + N+LI  Y   G ++ A  +F      DVV+W AM +     K  
Sbjct: 322 HGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLP 381

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
            +  + +  ME +G+LP  +T+V VLSACA +  LD+G R H    +  +V ++I+ N+L
Sbjct: 382 FKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSL 441

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            DMY+ C  +  ALE+F NI  K+V+S                               WT
Sbjct: 442 IDMYSKCKCVDNALEVFRNISGKNVVS-------------------------------WT 470

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           ++I G    NR  EAL  FR+M+ S ++P+  T++S+L+ACA +GAL  G+ +  +  + 
Sbjct: 471 SLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARIGALMRGKEIHAHALRT 529

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            V  D F+ NA++DMY +CG    A   F    +KD   W  ++ G A  G    ++++F
Sbjct: 530 GVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELF 588

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
            +ML   I PDE+T++ +L AC+ +GMV EG EYF  M  ++ + PN  HY C+VD+LGR
Sbjct: 589 DKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGR 648

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
           AG L++A + I++MP++P++ +WGALL ACR+HR+ E+ E+AAK++ E D  +   Y+LL
Sbjct: 649 AGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILL 708

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
           CN+YA C  WD   ++R ++ +RG+   PGCS +E+ G VH F++GD SH Q+KEI   L
Sbjct: 709 CNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVL 768

Query: 618 DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
           D   S +K  G+  ++   F    E  +      HSE+ A+AFGLI++ PG+ I + KNL
Sbjct: 769 DGFCSKMKENGF-GNLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGMPIWVTKNL 827

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD--YW 720
            MC  CH M K +S +  RE+ VRD   +HHFK G CSC D  YW
Sbjct: 828 YMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  252 bits (644), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 163/506 (32%), Positives = 260/506 (51%), Gaps = 41/506 (8%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G++  A  VF K+    V  WN ++ GY++       + +Y  ML +++RP+ YTFP +L
Sbjct: 146 GNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVL 205

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K       +  GKE+H HV++FGF+S V V NALI+ Y  CG++  AR +FD   K D +
Sbjct: 206 KTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRI 265

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNAM SGY       E  +LF  M    V P  +T+  V SAC  L +  +G+  H YV
Sbjct: 266 SWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYV 325

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            + +   ++ + N+L  MY++ G +  A  +F  +++KDV+SWTA++   ++        
Sbjct: 326 VKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSH------- 378

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
               ++P +                    A+  ++ M+   I PDE T+VS+L+ACA +G
Sbjct: 379 ----KLPFK--------------------AVETYKMMELEGILPDEITLVSVLSACACIG 414

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            L+LG  +     K  + + + V N+LIDMY KC  V+ A  VFR +  K+  +WT++I+
Sbjct: 415 HLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLIL 474

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           GL IN    ++L  F QM + S+ P+ VT + VLSAC   G +  G+E  A   ++ G+ 
Sbjct: 475 GLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRGKEIHAH-ALRTGVG 532

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
            +      ++D+  R G    AL    +   K +   W  LL        A++A     +
Sbjct: 533 FDGFLPNAILDMYVRCGRKVPALNQFNS--QKKDVTAWNILLTGYAQQGQAKLAVELFDK 590

Query: 543 ILELD--PDNEAVYVLLCNIYAACNR 566
           +LEL+  PD      LLC    AC++
Sbjct: 591 MLELEIHPDEITFISLLC----ACSK 612



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 201/418 (48%), Gaps = 38/418 (9%)

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           V + NAL+S +   G +  A  +F    + DV +WN +  GY +   FDE   L+  M  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
             + P   T   VL  CA + D+  GK  H +V       ++ + NAL  MY  C     
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKC----- 246

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
                G+I N                     AR  FD+MP+RD + W AMI GY      
Sbjct: 247 -----GDISN---------------------ARMLFDKMPKRDRISWNAMISGYFENGGG 280

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
            E L LF  M+  ++ PD  T+ ++ +AC  L    LG  V  Y+ K++   DI + N+L
Sbjct: 281 LEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           I MY   G +E+A+ VF  M  KD  +WTAMI  L  +    K+++ +  M    I+PDE
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDE 400

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
           +T V VLSAC   G +D G     ++ I+ G+  +      ++D+  +   ++ ALEV +
Sbjct: 401 ITLVSVLSACACIGHLDLGIR-LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFR 459

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE-LDPDNEAVYVLLCNIYAACNR 566
           N+  K N + W +L+   R++  +  A +  +Q+ E + P++    V L ++ +AC R
Sbjct: 460 NISGK-NVVSWTSLILGLRINNRSFEALLFFRQMKESMKPNS----VTLISVLSACAR 512



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 156/351 (44%), Gaps = 47/351 (13%)

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
           + +L  C   +  D G R +  V   K    + L NAL  M+   G +  A  +FG +  
Sbjct: 101 IALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSE 160

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           +DV SW  +V GY   G  D                               EAL L+  M
Sbjct: 161 RDVFSWNVLVGGYAKAGCFD-------------------------------EALNLYHRM 189

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
             + IRP+ +T  S+L  CA +  +  G+ +  ++ +   ++D+ VGNALI MY KCGD+
Sbjct: 190 LWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDI 249

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
             A+ +F +M ++D+ +W AMI G   NG G + L++FS M   S+ PD +T   V SAC
Sbjct: 250 SNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC 309

Query: 460 THTGMVDEGR---EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
                   GR    Y         I  N +    ++ +    G L EA  V   M  K +
Sbjct: 310 ELLDNERLGRGVHGYVVKSEFGGDISMNNS----LIQMYSSLGRLEEAETVFSRMESK-D 364

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELD---PDNEAVYVLLCNIYAAC 564
            + W A++ +   H+      +   +++EL+   PD     + L ++ +AC
Sbjct: 365 VVSWTAMIASLVSHK-LPFKAVETYKMMELEGILPDE----ITLVSVLSAC 410



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 119/256 (46%), Gaps = 14/256 (5%)

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             +A+     M    I  +E   +++L  C    A + G  V   +  +K    + +GNA
Sbjct: 78  LEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNA 137

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           L+ M+ + G++  A  VF +M  +D F+W  ++ G A  G  D++L+++ +ML A I P+
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPN 197

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             T+  VL  C     +  G+E  A + I+ G E +      ++ +  + G ++ A  + 
Sbjct: 198 VYTFPSVLKTCAGVSDIARGKEIHAHV-IRFGFESDVDVGNALITMYVKCGDISNARMLF 256

Query: 509 KNMPMKPNSIVWGALL-GACRVHRDAEMAEM-AAKQILELDPDNEAVYVLLCNIYAACNR 566
             MP K + I W A++ G        E  E+ +  + L +DPD     + +  + +AC  
Sbjct: 257 DKMP-KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPD----LITMTTVASACEL 311

Query: 567 WDNFRELRQMILDRGI 582
            DN R      L RG+
Sbjct: 312 LDNER------LGRGV 321



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 109/269 (40%), Gaps = 63/269 (23%)

Query: 10  PSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           P+++T    LIS +  C  +  L   K+IH+  ++ G+  +  + N ++        DM 
Sbjct: 498 PNSVT----LISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAIL--------DMY 545

Query: 67  YACKVFRKIP--------RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
             C   RK+P        +  V  WN ++ GY++    K  V ++  ML+ ++ PD  TF
Sbjct: 546 VRCG--RKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF 603

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             LL   ++   V  G E                 N + + Y L   +     + D+   
Sbjct: 604 ISLLCACSKSGMVTEGLEYF---------------NIMKNKYNLTPNLKHYACVVDI--- 645

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
                         R  Q D+      +M    + P +     +L+AC   +++++G+ A
Sbjct: 646 ------------LGRAGQLDDAYDFIQDMP---IRPDAAIWGALLNACRIHRNVELGEIA 690

Query: 239 HRYV--KECKIVPNLILENALTDMYAACG 265
            + V  K+ K V   IL   L ++YA CG
Sbjct: 691 AKRVFEKDNKSVGYYIL---LCNLYAGCG 716


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/705 (36%), Positives = 392/705 (55%), Gaps = 40/705 (5%)

Query: 21  SPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S ++TC  +  +   K+IH+  I+ G  ++  V N L+T    + GD+  A  +F K+P+
Sbjct: 203 SVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYV-KCGDISNARMLFDKMPK 261

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
                WN MI GY        G+ ++  M +  V PD  T   +            G+ +
Sbjct: 262 RDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGV 321

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H +V+K  F   + + N+LI  Y   G ++ A  +F      DVV+W AM +     K  
Sbjct: 322 HGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLP 381

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
            +  + +  ME +G+LP  +T+V VLSACA +  LD+G R H    +  +V ++I+ N+L
Sbjct: 382 FKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSL 441

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            DMY+ C  +  ALE+F NI  K+V+S                               WT
Sbjct: 442 IDMYSKCKCVDNALEVFRNISGKNVVS-------------------------------WT 470

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           ++I G    NR  EAL  FR+M+ S ++P+  T++S+L+ACA +GAL  G+ +  +  + 
Sbjct: 471 SLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARIGALMRGKEIHAHALRT 529

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            V  D F+ NA++DMY +CG    A   F    +KD   W  ++ G A  G    ++++F
Sbjct: 530 GVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELF 588

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
            +ML   I PDE+T++ +L AC+ +GMV EG EYF  M  ++ + PN  HY C+VD+LGR
Sbjct: 589 DKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGR 648

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
           AG L++A + I++MP++P++ +WGALL ACR+HR+ E+ E+AAK++ E D  +   Y+LL
Sbjct: 649 AGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILL 708

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
           CN+YA C  WD   ++R ++ +RG+   PGCS +E+ G VH F++GD SH Q+KEI   L
Sbjct: 709 CNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVL 768

Query: 618 DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
           D   S +K  G+  ++   F    E  +      HSE+ A+AFGLI++ PG+ I + KNL
Sbjct: 769 DGFCSKMKENGF-GNLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGMPIWVXKNL 827

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD--YW 720
            MC  CH M K +S +  RE+ VRD   +HHFK G CSC D  YW
Sbjct: 828 YMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 163/506 (32%), Positives = 260/506 (51%), Gaps = 41/506 (8%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G++  A  VF K+    V  WN ++ GY++       + +Y  ML +++RP+ YTFP +L
Sbjct: 146 GNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVL 205

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K       +  GKE+H HV++FGF+S V V NALI+ Y  CG++  AR +FD   K D +
Sbjct: 206 KTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRI 265

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNAM SGY       E  +LF  M    V P  +T+  V SAC  L +  +G+  H YV
Sbjct: 266 SWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYV 325

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            + +   ++ + N+L  MY++ G +  A  +F  +++KDV+SWTA++   ++        
Sbjct: 326 VKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSH------- 378

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
               ++P +                    A+  ++ M+   I PDE T+VS+L+ACA +G
Sbjct: 379 ----KLPFK--------------------AVETYKMMELEGILPDEITLVSVLSACACIG 414

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            L+LG  +     K  + + + V N+LIDMY KC  V+ A  VFR +  K+  +WT++I+
Sbjct: 415 HLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLIL 474

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           GL IN    ++L  F QM + S+ P+ VT + VLSAC   G +  G+E  A   ++ G+ 
Sbjct: 475 GLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRGKEIHAH-ALRTGVG 532

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
            +      ++D+  R G    AL    +   K +   W  LL        A++A     +
Sbjct: 533 FDGFLPNAILDMYVRCGRKVPALNQFNS--QKKDVTAWNILLTGYAQQGQAKLAVELFDK 590

Query: 543 ILELD--PDNEAVYVLLCNIYAACNR 566
           +LEL+  PD      LLC    AC++
Sbjct: 591 MLELEIHPDEITFISLLC----ACSK 612



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 201/418 (48%), Gaps = 38/418 (9%)

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           V + NAL+S +   G +  A  +F    + DV +WN +  GY +   FDE   L+  M  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
             + P   T   VL  CA + D+  GK  H +V       ++ + NAL  MY  C     
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKC----- 246

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
                G+I N                     AR  FD+MP+RD + W AMI GY      
Sbjct: 247 -----GDISN---------------------ARMLFDKMPKRDRISWNAMISGYFENGGG 280

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
            E L LF  M+  ++ PD  T+ ++ +AC  L    LG  V  Y+ K++   DI + N+L
Sbjct: 281 LEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           I MY   G +E+A+ VF  M  KD  +WTAMI  L  +    K+++ +  M    I+PDE
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDE 400

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
           +T V VLSAC   G +D G     ++ I+ G+  +      ++D+  +   ++ ALEV +
Sbjct: 401 ITLVSVLSACACIGHLDLGIR-LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFR 459

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE-LDPDNEAVYVLLCNIYAACNR 566
           N+  K N + W +L+   R++  +  A +  +Q+ E + P++    V L ++ +AC R
Sbjct: 460 NISGK-NVVSWTSLILGLRINNRSFEALLFFRQMKESMKPNS----VTLISVLSACAR 512



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 156/351 (44%), Gaps = 47/351 (13%)

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
           + +L  C   +  D G R +  V   K    + L NAL  M+   G +  A  +FG +  
Sbjct: 101 IALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSE 160

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           +DV SW  +V GY   G  D                               EAL L+  M
Sbjct: 161 RDVFSWNVLVGGYAKAGCFD-------------------------------EALNLYHRM 189

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
             + IRP+ +T  S+L  CA +  +  G+ +  ++ +   ++D+ VGNALI MY KCGD+
Sbjct: 190 LWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDI 249

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
             A+ +F +M ++D+ +W AMI G   NG G + L++FS M   S+ PD +T   V SAC
Sbjct: 250 SNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC 309

Query: 460 THTGMVDEGR---EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
                   GR    Y         I  N +    ++ +    G L EA  V   M  K +
Sbjct: 310 ELLDNERLGRGVHGYVVKSEFGGDISMNNS----LIQMYSSLGRLEEAETVFSRMESK-D 364

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELD---PDNEAVYVLLCNIYAAC 564
            + W A++ +   H+      +   +++EL+   PD     + L ++ +AC
Sbjct: 365 VVSWTAMIASLVSHK-LPFKAVETYKMMELEGILPDE----ITLVSVLSAC 410



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 119/256 (46%), Gaps = 14/256 (5%)

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             +A+     M    I  +E   +++L  C    A + G  V   +  +K    + +GNA
Sbjct: 78  LEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNA 137

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           L+ M+ + G++  A  VF +M  +D F+W  ++ G A  G  D++L+++ +ML A I P+
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPN 197

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             T+  VL  C     +  G+E  A + I+ G E +      ++ +  + G ++ A  + 
Sbjct: 198 VYTFPSVLKTCAGVSDIARGKEIHAHV-IRFGFESDVDVGNALITMYVKCGDISNARMLF 256

Query: 509 KNMPMKPNSIVWGALL-GACRVHRDAEMAEM-AAKQILELDPDNEAVYVLLCNIYAACNR 566
             MP K + I W A++ G        E  E+ +  + L +DPD     + +  + +AC  
Sbjct: 257 DKMP-KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPD----LITMTTVASACEL 311

Query: 567 WDNFRELRQMILDRGI 582
            DN R      L RG+
Sbjct: 312 LDNER------LGRGV 321



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 109/269 (40%), Gaps = 63/269 (23%)

Query: 10  PSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           P+++T    LIS +  C  +  L   K+IH+  ++ G+  +  + N ++        DM 
Sbjct: 498 PNSVT----LISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAIL--------DMY 545

Query: 67  YACKVFRKIP--------RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
             C   RK+P        +  V  WN ++ GY++    K  V ++  ML+ ++ PD  TF
Sbjct: 546 VRCG--RKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF 603

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             LL   ++   V  G E                 N + + Y L   +     + D+   
Sbjct: 604 ISLLCACSKSGMVTEGLEYF---------------NIMKNKYNLTPNLKHYACVVDI--- 645

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
                         R  Q D+      +M    + P +     +L+AC   +++++G+ A
Sbjct: 646 ------------LGRAGQLDDAYDFIQDMP---IRPDAAIWGALLNACRIHRNVELGEIA 690

Query: 239 HRYV--KECKIVPNLILENALTDMYAACG 265
            + V  K+ K V   IL   L ++YA CG
Sbjct: 691 AKRVFEKDNKSVGYYIL---LCNLYAGCG 716


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/588 (40%), Positives = 347/588 (59%), Gaps = 33/588 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALI--STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K +  H+++       F+ + LI  S   L G V  A  IF  ++  ++  WN +  GY 
Sbjct: 24  KAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYS 83

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
                     L+ +M   G+ P S T   VL AC KL  L  G+  H  + +  +     
Sbjct: 84  ISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETP 143

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           L N L  +YAACG M +A  +F                               D+MPE D
Sbjct: 144 LVNGLIKLYAACGCMDYACVMF-------------------------------DEMPEPD 172

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
              W+ M+ GY +  +  EAL LFREMQ  N+  D FT+ S++  C +LGAL+LG+WV +
Sbjct: 173 SASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHS 232

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           Y+DK  VK D+ +G AL+ MY KCG ++ A +VF+ M  +D   W+ MI G AI+GHG+K
Sbjct: 233 YMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEK 292

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L +F  M R+  IP+ VT+  VLSAC+H+G+V++G + F  M  ++ I P   HYGCMV
Sbjct: 293 ALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMV 352

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL  RAG +  A + I+ MP++PN ++W  LLGAC+ H   ++ E  +++IL+LDP +  
Sbjct: 353 DLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPE 412

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVL+ N+YA+  RW +  ++R ++ D+  KK  G S IE+N +VH+F+ GD+SHP+ ++
Sbjct: 413 NYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREK 472

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY  L +M   LK VG++    +V  D+ EE+KE A+  HSE+LA+A+GL+ +  G  IR
Sbjct: 473 IYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIR 532

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IVKNLR+C DCH + KL+S VY+RE+IVRD+ RFHHF+   CSC DYW
Sbjct: 533 IVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 211/433 (48%), Gaps = 34/433 (7%)

Query: 13  LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKV 71
           +  +  L++ I+ C  +  LK I +  ++  L  +  + +KL+ +   +  G + YA ++
Sbjct: 4   MLDQGSLVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRI 63

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           F     P++ +WNT+I+GYS  DS    + +Y DM    + P++YTF F+LK   + + +
Sbjct: 64  FSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRL 123

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             G+ELH  ++K G D    + N LI  Y  CG +D A  +FD   + D  +W+ M SGY
Sbjct: 124 CEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGY 183

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            +  Q  E  KLF EM+ + V   + T+  V+  C  L  LD+GK  H Y+ +  +  ++
Sbjct: 184 AQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDV 243

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
           +L  AL  MY+ CG +  AL++F  +  +DV +W+ ++ GY   G  + A Q FD     
Sbjct: 244 VLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDA---- 299

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV- 370
                                      M+ S   P+  T  S+L+AC++ G +E G  + 
Sbjct: 300 ---------------------------MKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIF 332

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           +T   + K+   I     ++D++C+ G V  A +  + M +  +   W  ++     +G+
Sbjct: 333 ETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGY 392

Query: 430 GDKSLDMFSQMLR 442
            D    +  ++L+
Sbjct: 393 KDLGEHISRKILK 405


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/688 (36%), Positives = 382/688 (55%), Gaps = 33/688 (4%)

Query: 31   QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
            + K++H   +KLG  +N  V N L+     + G ++ A  +F ++  P V  WN+MI G 
Sbjct: 488  ECKRVHGYVLKLGFGSNTAVVNSLIA-AYFKFGGVESAHNLFDELSEPDVVSWNSMINGC 546

Query: 91   SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
                   NG+ I++ ML   V  D  T   +L  +     +  G+ LH   +K  F   V
Sbjct: 547  VVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEV 606

Query: 151  FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
               N L+  Y  CG ++ A  +F       +V+W +  + Y R   + +   LF EM+ K
Sbjct: 607  VFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSK 666

Query: 211  GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
            GV P   T+  ++ ACA    LD G+  H YV +  +  NL + NAL +MYA CG     
Sbjct: 667  GVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG----- 721

Query: 271  LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
                                       V+ AR  F ++P +D V W  MI GY + +   
Sbjct: 722  --------------------------SVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPN 755

Query: 331  EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
            EAL LF +MQ    +PD+ T+  +L ACA L AL+ G  +  +I +    +D+ V  AL+
Sbjct: 756  EALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALV 814

Query: 391  DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            DMY KCG +  AQ +F  + +KD  +WT MI G  ++G G++++  F++M  A I PDE 
Sbjct: 815  DMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDES 874

Query: 451  TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
            ++  +L+AC+H+G+++EG ++F  M  + G+EP   HY C+VDLL R G+L++A + I++
Sbjct: 875  SFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIES 934

Query: 511  MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
            MP+KP++ +WG LL  CR+H D ++AE  A+ I EL+PDN   YV+L N+YA   +W+  
Sbjct: 935  MPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEV 994

Query: 571  RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
            ++LR+ +  RG K+ PGCS IE+ G  + FVAG+  HPQ K I + L ++T  ++   Y 
Sbjct: 995  KKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYF 1054

Query: 631  PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
                 V ++  + +KE     HSEK AMAFG+++  PG T+R+ KN R+C DCH M K +
Sbjct: 1055 SMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFM 1114

Query: 691  SMVYDREVIVRDKTRFHHFKHGSCSCKD 718
            S    RE+++RD  RFHHFK G CSC+D
Sbjct: 1115 SKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 204/470 (43%), Gaps = 43/470 (9%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           ++E GK +H  ++  G      +   L+  Y  CG++   R IFD    D V  WN + S
Sbjct: 384 SLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMS 443

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
            Y ++  F E+  LF +M++ GV+    T   VL   A L  +   KR H YV +     
Sbjct: 444 EYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGS 503

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           N  + N+L   Y   G +  A  +F  +   DV+SW +++ G +                
Sbjct: 504 NTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV---------------- 547

Query: 310 ERDYVLWTAMIDGYLRVNRFR-EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                           VN F    L +F +M    +  D  T+VS+L A AN+G L LG 
Sbjct: 548 ----------------VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGR 591

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            +  +  K     ++   N L+DMY KCG++  A  VF +M      +WT+ I      G
Sbjct: 592 ALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREG 651

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
               ++ +F +M    + PD  T   ++ AC  +  +D+GR+  +   I++G+  N    
Sbjct: 652 LYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHS-YVIKNGMGSNLPVT 710

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR-DAEMAEMAAKQILELD 547
             ++++  + G + EA  V   +P+K + + W  ++G    +    E  E+      +  
Sbjct: 711 NALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGGYSQNSLPNEALELFLDMQKQFK 769

Query: 548 PDNEAVYVLL--CNIYAACNRWDNFRELRQMILDRGIKKT--PGCSMIEM 593
           PD+  +  +L  C   AA    D  RE+   IL RG        C++++M
Sbjct: 770 PDDITMACVLPACAGLAA---LDKGREIHGHILRRGYFSDLHVACALVDM 816



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 135/306 (44%), Gaps = 35/306 (11%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           VL  CA+ K L+ GKR H  +    I  +  L   L  MY  CG++              
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDL-------------- 420

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
                  V G          R+ FD++      LW  ++  Y ++  FRE+++LF++MQ 
Sbjct: 421 -------VQG----------RKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQK 463

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             +  + +T   +L   A LG ++  + V  Y+ K    ++  V N+LI  Y K G VE 
Sbjct: 464 LGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVES 523

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A  +F E+   D  +W +MI G  +NG     L++F QML   +  D  T V VL A  +
Sbjct: 524 AHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWAN 583

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV-W 520
            G +  GR       ++            ++D+  + G+LN A EV   + M   +IV W
Sbjct: 584 IGNLSLGRALHG-FGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVF--VKMGDTTIVSW 640

Query: 521 GALLGA 526
            + + A
Sbjct: 641 TSTIAA 646



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 99/213 (46%), Gaps = 4/213 (1%)

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           A I+ +  +   R A+ L  + ++  +  + +   S+L  CA   +LE G+ V + I  N
Sbjct: 341 AKINKFCEMGDLRNAIELLTKSKSYELGLNSY--CSVLQLCAEKKSLEDGKRVHSVIISN 398

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            +  D  +G  L+ MY  CGD+ + +++F +++    F W  ++   A  G+  +S+ +F
Sbjct: 399 GISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLF 458

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
            +M +  ++ +  T+  VL      G V E +       ++ G   N A    ++    +
Sbjct: 459 KKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG-YVLKLGFGSNTAVVNSLIAAYFK 517

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            G +  A  +   +  +P+ + W +++  C V+
Sbjct: 518 FGGVESAHNLFDELS-EPDVVSWNSMINGCVVN 549


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/589 (39%), Positives = 353/589 (59%), Gaps = 34/589 (5%)

Query: 135 KELHCHVLKFGF--DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H   ++ G    +  F ++ + +   L   +  A  IF+     ++ TWN M  G+ 
Sbjct: 52  KQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFA 111

Query: 193 RVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
             +      +LF +M     +LP + T   +  A AKL D+ +G+  H  V         
Sbjct: 112 ESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLR 171

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            ++N+L  MY+  G +                                 A Q F+ M  R
Sbjct: 172 FVQNSLVHMYSVLGSL-------------------------------XSAYQVFEIMSYR 200

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D V W ++I+G+       EALTL+REM +  + PD FT+VS+L+AC  LGAL LGE V 
Sbjct: 201 DRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVH 260

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            Y+ K  +  +    NAL+D+Y KCG+   AQ+VF EM  +   +WT++IVGLA+NG G+
Sbjct: 261 MYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGN 320

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L +F ++ R  + P E+T+VGVL AC+H GM+DEG  YF  M  ++GI P   H+GCM
Sbjct: 321 EALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCM 380

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLL RAG + +A + I+NMP+ PN+++W  LLGAC +H   E+ E+A  +I  L+  + 
Sbjct: 381 VDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHS 440

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             +VLL N+YA+  RW + + +R+++L +G+KKTPG S++E+   V+EF+ GD+SHPQ++
Sbjct: 441 GDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSE 500

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           E Y  L ++T  LK  GY+P    V  D+ EE+KE A+  H+EK+A+AF L+++ PG  I
Sbjct: 501 ETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPI 560

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI+KNLR+C DCH   KL+S V++RE+IVRD++RFHHFK GSCSCKDYW
Sbjct: 561 RIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  209 bits (532), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 209/416 (50%), Gaps = 38/416 (9%)

Query: 20  ISPIETC-ESMHQLKQIHSQTIKLGLL-TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           IS ++ C  S  +LKQIH+ +I+ G+   NP     L+    S    M +A ++F +I  
Sbjct: 38  ISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQA 97

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDM-LKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           P++  WNTMI+G++  ++    V ++  M   S + PD +TFPFL K   + + V  G+ 
Sbjct: 98  PNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEG 157

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  V++ GFDS  FVQN+L+  Y + G +  A  +F++    D V WN++ +G+     
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGM 217

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            +E   L+ EM  +GV P   T+V +LSAC +L  L +G+R H Y+ +  +V N    NA
Sbjct: 218 PNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNA 277

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L D+Y+ CG    A ++F  ++ + V+SWT+++ G                         
Sbjct: 278 LLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVG------------------------- 312

Query: 317 TAMIDGYLRVNRF-REALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYI 374
                  L VN    EAL LF E++   ++P E T V +L AC++ G L+ G  + +   
Sbjct: 313 -------LAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMK 365

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           ++  +   I     ++D+ C+ G V  A    R M +  +   W  ++    I+GH
Sbjct: 366 EEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGH 421



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IHS  ++ G  +   VQN LV    S  G +  A +VF  +       WN++I G++   
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMY-SVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNG 216

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
                + +Y +M    V PD +T   LL       A+  G+ +H +++K G   +    N
Sbjct: 217 MPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASN 276

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           AL+  Y  CG    A+ +FD   +  VV+W ++  G       +E  KLFGE+ER+G+ P
Sbjct: 277 ALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKP 336

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEI 273
           + +T V VL AC+    LD G    R +K E  I+P +     + D+    G++G A + 
Sbjct: 337 SEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDY 396

Query: 274 FGNIK-NKDVISWTAI-----VTGYINRGQVDMAR-QYFDQMPERDYVLWTAM 319
             N+    + + W  +     + G++  G+V  A  Q  +Q    D+VL + +
Sbjct: 397 IRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNL 449


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/573 (41%), Positives = 351/573 (61%), Gaps = 40/573 (6%)

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS-----VTIVLVLSACAKLKDLDV 234
           ++  +NA+   + +   +  T   F     + VLP +      T   VL ACA L  +  
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFN---NQLVLPNAPNPDEYTFTSVLKACAGLAQVLE 145

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G++ H +V +     NL + N+L D+Y   G    A ++F  +  +DV+SW  +++GY  
Sbjct: 146 GQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCF 205

Query: 295 RGQVDMAR-------------------------------QYFDQMPERDYVLWTAMIDGY 323
            G VD AR                               Q F+ MP R+ V W AMI GY
Sbjct: 206 SGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGY 265

Query: 324 LRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
            +  ++ +A+ LFR+MQ    + P++ T+VS+L+ACA+LGAL+LG+W+  +I +NK++  
Sbjct: 266 AQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVG 325

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           +F+GNAL DMY KCG V +A+ VF EM  +D  +W+ +I+GLA+ G+ +++ + F++M+ 
Sbjct: 326 LFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIE 385

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             + P++++++G+L+ACTH G+VD+G EYF  M   +GI P   HYGC+VDLL RAG L+
Sbjct: 386 DGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLD 445

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           +A  +I +MPM+PN IVWGALLG CR+++DAE  E    +ILELD ++    V L N+YA
Sbjct: 446 QAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYA 505

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
           +  R D+    R  + D    KTPGCS IE+N  V+EF  GD SHPQ+  IY  + E+  
Sbjct: 506 SMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKW 565

Query: 623 DLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
            +K  GY P    V  ++ EE+KE A+  HSEKLA+AFGLI++  G TIRIVKNLR+C D
Sbjct: 566 KMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCND 625

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715
           CH   K++S + +RE++VRD++RFHHFK G CS
Sbjct: 626 CHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 202/468 (43%), Gaps = 100/468 (21%)

Query: 28  SMHQLKQIHSQTIKLGLLT-NPTVQNKLVTFCCSEKGDMKYACKVFRK-IPRPSVCLWNT 85
           SM QL +I +Q I   + + +P +         S  G+++++  +F   +  P++  +N 
Sbjct: 36  SMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNA 95

Query: 86  MIKGYSRIDSHKNGVLIYLD--MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           ++K +S+ ++    +  + +  +L +   PD YTF  +LK       V  G+++HC V K
Sbjct: 96  LLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTK 155

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA----------------- 186
           +G +S++FV+N+L+  Y   G   +A+ +FD     DVV+WN                  
Sbjct: 156 YGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMV 215

Query: 187 --------------MFSGYKRVKQFDETRKLFGEMERK---------------------- 210
                         M SGY RV   +E R+LF  M  +                      
Sbjct: 216 FDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAI 275

Query: 211 ----------GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
                     G+ P  VT+V VLSACA L  LD+GK  HR+++  KI   L L NAL DM
Sbjct: 276 ELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADM 335

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           YA CG +  A  +F  +  +DVISW+ I+ G    G  +                     
Sbjct: 336 YAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYAN--------------------- 374

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKV 379
                     EA   F EM    + P++ + + +LTAC + G ++ G E+         +
Sbjct: 375 ----------EAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGI 424

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAI 426
              I     ++D+  + G +++A+ +   M ++ +   W A++ G  I
Sbjct: 425 TPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRI 472


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/761 (32%), Positives = 415/761 (54%), Gaps = 75/761 (9%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           +IH   IK G   +  ++  L+ F     G ++ A +VF ++P P   LWN  I    + 
Sbjct: 154 EIHGCLIKRGFDLDVYLRCALMNFYGRCWG-LEKANQVFHEMPNPEALLWNEAIILNLQS 212

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           +  + GV ++  M  S ++ +  T   +L+   +  A+   K++H +V +FG DS V + 
Sbjct: 213 EKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLC 272

Query: 154 NALISTYCLCGEVDMARGIFDV--------------SY---------------------K 178
           N LIS Y   G++++AR +FD               SY                     K
Sbjct: 273 NPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMK 332

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D+VTWN + SG+      +E   +   M+ +G  P S ++  VL A ++L  L++GK  
Sbjct: 333 PDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKET 392

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H YV       ++ +  +L DMY     +  A  +F N+KN+++ +W ++V+GY  +G  
Sbjct: 393 HGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMF 452

Query: 299 DMARQYFDQMPER---------------------------------------DYVLWTAM 319
           + A +  +QM +                                        + V WTA+
Sbjct: 453 EDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTAL 512

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I G  +    R++L  F +MQ   + P+  +I  +L ACA+L  L+ G+ +     +N  
Sbjct: 513 ISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGF 572

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
             D+FV  ALIDMY K   ++ A +VFR +  K   +W  MI+G AI G G +++ +F++
Sbjct: 573 IEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNE 632

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M +  + PD +T+  +LSAC ++G++ EG +YF  M   + I P   HY CMVDLLGRAG
Sbjct: 633 MQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAG 692

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
           +L+EA ++I  MP+KP++ +WGALLG+CR+H++ + AE AAK + +L+P+N A Y+L+ N
Sbjct: 693 YLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMN 752

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           +Y+  NRW++   LR+++   G++     S I++N  VH F + +K HP   +IY +L +
Sbjct: 753 LYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQ 812

Query: 620 MTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
           + S++K +GY+PD++ V+ ++ E +K++ +  H+EKLA+ +GLI    G  IR++KN R+
Sbjct: 813 LVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRI 872

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C DCH  AK +S+V  RE+ +RD  RFHHF+ G CSC D+W
Sbjct: 873 CSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 142/531 (26%), Positives = 255/531 (48%), Gaps = 15/531 (2%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           +P S L  ++          S+  +K +H+Q IKL    NP    K +       GD   
Sbjct: 25  TPTSKLYLDSHSSDDSNVITSLTSVKMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWS 84

Query: 68  ACKVFR-KIPRPSVCLWNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLKGF 125
           A  VF   +PR +   WN+ ++ +       + VL ++ ++    V  D+  +   LK  
Sbjct: 85  AAMVFYVGLPR-NYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTC 143

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
           TR + +  G E+H  ++K GFD  V+++ AL++ Y  C  ++ A  +F      + + WN
Sbjct: 144 TRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWN 203

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
                  + ++  +  +LF +M+   +   + TIV VL AC K+  L+  K+ H YV   
Sbjct: 204 EAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRF 263

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
            +  ++ L N L  MY+  G++  A  +F +++N++  SW ++++ Y   G ++ A   F
Sbjct: 264 GLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLF 323

Query: 306 DQMPERDY----VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
            ++   D     V W  ++ G+       E L + + MQ    +P+  ++ S+L A + L
Sbjct: 324 YELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISEL 383

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
           G L +G+    Y+ +N    D++VG +LIDMY K   +  AQ VF  M  ++ F W +++
Sbjct: 384 GFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLV 443

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM--TIQH 479
            G +  G  + +L + +QM +  I PD VT+ G++S     G    G+E  A +  T   
Sbjct: 444 SGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGC---GKEALAVLHQTKSL 500

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK---PNSIVWGALLGAC 527
           G+ PN   +  ++    +AG+  ++L+    M  +   PNS     LL AC
Sbjct: 501 GLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRAC 551



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 140/325 (43%), Gaps = 8/325 (2%)

Query: 27  ESMHQLKQIHSQTIKLGLLT-NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT 85
           +++  L Q+  + IK  L+T N  +    +  C  E   + +  K     P  +V  W  
Sbjct: 454 DALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTP--NVVSWTA 511

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           +I G S+  ++++ +  +  M +  V P++ +   LL+       ++ GKE+HC  ++ G
Sbjct: 512 LISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNG 571

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           F   VFV  ALI  Y     +  A  +F       + +WN M  G+       E   +F 
Sbjct: 572 FIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFN 631

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENALTDMYAAC 264
           EM++ GV P ++T   +LSAC     +  G K     + + +IVP L     + D+    
Sbjct: 632 EMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRA 691

Query: 265 GEMGFALEIFGNIKNK-DVISWTAIVTG---YINRGQVDMARQYFDQMPERDYVLWTAMI 320
           G +  A ++   +  K D   W A++     + N    + A +   ++   +   +  M+
Sbjct: 692 GYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMM 751

Query: 321 DGYLRVNRFREALTLFREMQTSNIR 345
           + Y   NR+ +   L   M  + +R
Sbjct: 752 NLYSIFNRWEDMDHLRELMGAAGVR 776


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/704 (33%), Positives = 395/704 (56%), Gaps = 33/704 (4%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
             LIS   +    H  + IH+   K G  ++  + N  VT     +  ++   + F+ + 
Sbjct: 94  ASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQ-SVENGWQFFKAMM 152

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             ++   N ++ G+   ++   G  I + +L     P+ YTF  +LK       +  GK 
Sbjct: 153 IENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKA 212

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  V+K G +    + N+L++ Y  CG  + A  +F    + DVV+W A+ +G+   + 
Sbjct: 213 IHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFV-AEG 271

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
           +    ++F +M  +G  P   T + +L +C+ L D+D+GK+ H  + +  +  N  +  A
Sbjct: 272 YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA 331

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L DMYA                               NR   D A   F+++ +RD   W
Sbjct: 332 LVDMYAK------------------------------NRFLED-AETIFNRLIKRDLFAW 360

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           T ++ GY +  +  +A+  F +MQ   ++P+EFT+ S L+ C+ +  L+ G  + +   K
Sbjct: 361 TVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIK 420

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
                D+FV +AL+DMY KCG VE A+ VF  ++ +D  +W  +I G + +G G K+L  
Sbjct: 421 AGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKA 480

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F  ML    +PDEVT++GVLSAC+H G+++EG+++F  ++  +GI P   HY CMVD+LG
Sbjct: 481 FEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILG 540

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           RAG  +E    I+ M +  N ++W  +LGAC++H + E  E AA ++ EL+P+ ++ Y+L
Sbjct: 541 RAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYIL 600

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L N++AA   WD+   +R ++  RG+KK PGCS +E+NG VH F++ D SHP+ +EI+LK
Sbjct: 601 LSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLK 660

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L ++   L  VGY P+   V  +V + +K+  ++ HSE+LA+AF L+S+    TIRI KN
Sbjct: 661 LQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKN 720

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C DCH   K +S + ++E++VRD   FHHFK+GSCSC+++W
Sbjct: 721 LRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/607 (38%), Positives = 353/607 (58%), Gaps = 36/607 (5%)

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           +F  NAL+S Y   G +   +  FD     D V++N   +G+       E+ +LF  M+R
Sbjct: 89  IFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQR 148

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
           +G  PT  TIV +L+A A+L DL  GK+ H  +     + N+ + NALTDMYA CGE+  
Sbjct: 149 EGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQ 208

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQ-------------------------------- 297
           A  +F  +  K+++SW  +++GY   GQ                                
Sbjct: 209 ARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQ 268

Query: 298 ---VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
              VD AR+ F +  E+D V WTAM+ GY +  R  +AL LF EM   +I PD +T+ S+
Sbjct: 269 CGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSV 328

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           +++CA L +L  G+ V        + N++ V +ALIDMY KCG ++ A+ VF  M  ++ 
Sbjct: 329 VSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +W AMIVG A NGH   +L++F  ML+    PD VT++G+LSAC H   +++G+EYF  
Sbjct: 389 VSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDS 448

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           +T QHG+ P   HY CMV+LLGR G + +A+ +IKNM   P+ ++W  LL  C    D  
Sbjct: 449 ITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIV 508

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
            AE+AA+ + ELDP     Y++L N+YA+  RW +   +R ++  + +KK  G S IE++
Sbjct: 509 NAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEID 568

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
             VH F + D++HP++++IY KL+ +   L+  G+ P+ + V  DVGE++K +++  HSE
Sbjct: 569 NEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSE 628

Query: 655 KLAMAFGLISSGPGVT-IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
           KLA+AFGLI    G++ IRI+KN+R+C DCH   K  S +  R++I+RD  RFHHF  G 
Sbjct: 629 KLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGK 688

Query: 714 CSCKDYW 720
           CSC D W
Sbjct: 689 CSCNDNW 695



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 186/378 (49%), Gaps = 20/378 (5%)

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP-NLILENALTDMYAACGEMGFALEI 273
           TS     ++  C +  +++  KR   +++     P +  L N L  +YA  G++  A  +
Sbjct: 21  TSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNL 80

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  +D+ SW A+++ Y   G +   +  FD+MP RD V +   I G+   +  +E+L
Sbjct: 81  FDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESL 140

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LF+ MQ     P E+TIVSIL A A L  L  G+ +   I       ++F+ NAL DMY
Sbjct: 141 ELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMY 200

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KCG++E+A+ +F  + +K+  +W  MI G A NG  +K + +  QM  +  +PD+VT  
Sbjct: 201 AKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMS 260

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            +++A    G VDE R  F++       E +   +  M+    + G   +AL +   M +
Sbjct: 261 TIIAAYCQCGRVDEARRVFSEFK-----EKDIVCWTAMMVGYAKNGREEDALLLFNEMLL 315

Query: 514 ---KPNSIVWGALLGACRVHRDAEMAEM------AAKQILELDPDNEAVYVLLCNIYAAC 564
              +P+S    +++ +C     A++A +        K IL    +N  V   L ++Y+ C
Sbjct: 316 EHIEPDSYTLSSVVSSC-----AKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKC 370

Query: 565 NRWDNFRELRQMILDRGI 582
              D+ R +  ++  R +
Sbjct: 371 GFIDDARSVFNLMPTRNV 388



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 173/430 (40%), Gaps = 99/430 (23%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           ++ G ++     F ++P      +NT I G+S     +  + ++  M +    P  YT  
Sbjct: 100 AKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIV 159

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L    +   + +GK++H  ++   F  +VF+ NAL   Y  CGE++ AR +FD   K 
Sbjct: 160 SILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKK 219

Query: 180 DVVTWNAMFSGYKRVKQ-----------------------------------FDETRKLF 204
           ++V+WN M SGY +  Q                                    DE R++F
Sbjct: 220 NLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF 279

Query: 205 GEMERKGVL-------------------------------PTSVTIVLVLSACAKLKDLD 233
            E + K ++                               P S T+  V+S+CAKL  L 
Sbjct: 280 SEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLH 339

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
            G+  H       +  NL++ +AL DMY+ CG +  A  +F  +  ++V+SW A++ G  
Sbjct: 340 HGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCA 399

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
             G                                 ++AL LF  M     +PD  T + 
Sbjct: 400 QNGHD-------------------------------KDALELFENMLQQKFKPDNVTFIG 428

Query: 354 ILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           IL+AC +   +E G E+  +  +++ +   +     ++++  + G +E+A  + + M   
Sbjct: 429 ILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHD 488

Query: 413 DKF-TWTAMI 421
             F  W+ ++
Sbjct: 489 PDFLIWSTLL 498



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 83/175 (47%), Gaps = 3/175 (1%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           + ++S      S+H  + +H ++I  GL  N  V + L+    S+ G +  A  VF  +P
Sbjct: 326 SSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDM-YSKCGFIDDARSVFNLMP 384

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             +V  WN MI G ++    K+ + ++ +ML+   +PDN TF  +L        +E G+E
Sbjct: 385 TRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQE 444

Query: 137 LHCHVL-KFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFS 189
               +  + G   ++     +++     G ++ A  +  ++++  D + W+ + S
Sbjct: 445 YFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/655 (36%), Positives = 380/655 (58%), Gaps = 36/655 (5%)

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           R + +  V  WN++I   +R       +L +  M K  + P   +FP  +K  +    + 
Sbjct: 34  RYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIF 93

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            GK+ H     FG+ S +FV +ALI  Y  CG+++ AR +FD   K ++V+W +M  GY 
Sbjct: 94  SGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYD 153

Query: 193 RVKQFDETRKLFGEM------ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
                 +   LF ++      +   +   S+ +V V+SAC+++    + +  H +V +  
Sbjct: 154 LNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRG 213

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
               + + N L D YA  GE G A+                             AR+ FD
Sbjct: 214 FDRGVSVGNTLLDAYAKGGEGGVAV-----------------------------ARKIFD 244

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP-DEFTIVSILTACANLGALE 365
           Q+ ++D V + +++  Y +     EA  +FR +  + +   +  T+ ++L A ++ GAL 
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALR 304

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
           +G+ +   + +  +++D+ VG ++IDMYCKCG VE A++ F  M  K+  +WTAMI G  
Sbjct: 305 IGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYG 364

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           ++GH  K+L++F  M+ + + P+ +T+V VL+AC+H G+  EG  +F  M  + G+EP  
Sbjct: 365 MHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGL 424

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HYGCMVDLLGRAG L +A ++I+ M MKP+SI+W +LL ACR+H++ E+AE++  ++ E
Sbjct: 425 EHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFE 484

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           LD  N   Y+LL +IYA   RW +   +R ++ +RG+ K PG S++E+NG VH F+ GD+
Sbjct: 485 LDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDE 544

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
            HPQ ++IY  L E+   L   GY+ + S V  DV EE+KE  +  HSEKLA+AFG++++
Sbjct: 545 EHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNT 604

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            PG T+ +VKNLR+C DCH + KL+S + DRE +VRD  RFHHFK G CSC DYW
Sbjct: 605 VPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 201/441 (45%), Gaps = 46/441 (10%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTF 57
           + + SS+   S     +     I+ C S+  +   KQ H Q    G  ++  V + L+  
Sbjct: 61  LLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVM 120

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
             S  G ++ A KVF +IP+ ++  W +MI+GY    +  + V ++ D+L  +   D+  
Sbjct: 121 Y-STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAM 179

Query: 118 F------PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE--VDMA 169
           F        ++   +R  A    + +H  V+K GFD  V V N L+  Y   GE  V +A
Sbjct: 180 FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP-TSVTIVLVLSACAK 228
           R IFD     D V++N++ S Y +    +E  ++F  + +  V+   ++T+  VL A + 
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSH 299

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
              L +GK  H  V    +  ++I+  ++ DMY  C                        
Sbjct: 300 SGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC------------------------ 335

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
                  G+V+ AR+ FD+M  ++   WTAMI GY       +AL LF  M  S +RP+ 
Sbjct: 336 -------GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNY 388

Query: 349 FTIVSILTACANLGA-LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407
            T VS+L AC++ G  +E   W      +  V+  +     ++D+  + G ++KA  + +
Sbjct: 389 ITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQ 448

Query: 408 EM-LRKDKFTWTAMIVGLAIN 427
            M ++ D   W++++    I+
Sbjct: 449 RMKMKPDSIIWSSLLAACRIH 469



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 133/301 (44%), Gaps = 7/301 (2%)

Query: 19  LISPIETCESMHQ---LKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRK 74
           L+S I  C  +      + IHS  IK G     +V N L+  +    +G +  A K+F +
Sbjct: 186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN-YTFPFLLKGFTRDIAVEF 133
           I       +N+++  Y++         ++  ++K+ V   N  T   +L   +   A+  
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK +H  V++ G +  V V  ++I  YC CG V+ AR  FD     +V +W AM +GY  
Sbjct: 306 GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGM 365

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLI 252
                +  +LF  M   GV P  +T V VL+AC+       G R    +K    + P L 
Sbjct: 366 HGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLE 425

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPER 311
               + D+    G +  A ++   +K K D I W++++        V++A     ++ E 
Sbjct: 426 HYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFEL 485

Query: 312 D 312
           D
Sbjct: 486 D 486


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/707 (35%), Positives = 396/707 (56%), Gaps = 38/707 (5%)

Query: 17  TPLISPIETCESMHQLKQIHSQ-TIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           T ++    + E++ + K IHS+ +   GL  +  ++N L+T   ++ G ++ A ++F ++
Sbjct: 125 TTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMY-AKCGSLEDAKRLFERM 183

Query: 76  P-RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
             R SV  WN MI  Y++    +  + +Y DM   DV P   TF  +L   +    ++ G
Sbjct: 184 SGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQG 240

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           +++H  +   G +  + +QNAL++ Y  C  +D A  IF    + DVV+W+AM + +   
Sbjct: 241 RKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAET 300

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
             FDE  + + +M+ +GV P   T   VL ACA + DL  G+  H               
Sbjct: 301 DLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHD-------------- 346

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
                            +I GN     +++ TA+V  Y + G +D AR  FDQ+  RD  
Sbjct: 347 -----------------QILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEG 389

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS-ILTACANLGALELGEWVKTY 373
           LWT +I GY +       L L+REM+ +   P    I S +++ACA+LGA        + 
Sbjct: 390 LWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSD 449

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           I+ + + +D  +  +L++MY + G++E A++VF +M  +D   WT +I G A +G    +
Sbjct: 450 IEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLA 509

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           L ++ +M      P E+T++ VL AC+H G+ ++G++ F  +   + + PN AHY C++D
Sbjct: 510 LGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIID 569

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           LL RAG L++A E+I  MP++PN + W +LLGA R+H+D + A  AA QI +LDP + A 
Sbjct: 570 LLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPAS 629

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           YVLL N++A          +R  ++ RG+KK  G S IE+   +HEF  GD SHP+ +EI
Sbjct: 630 YVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEI 689

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
           + +L  ++  +K  GY+P+  EV  DVGE++KE  +  HSEKLA+AFGLI++ PG T+RI
Sbjct: 690 FAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRI 749

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              LR+C DCH   K +S +  RE+IVRD +RFH F+ G CSC DYW
Sbjct: 750 FNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 205/458 (44%), Gaps = 57/458 (12%)

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           ++VF+ N ++  Y  CG V  AR  FD   + +  +W +M + Y +   +     L+  M
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP-NLILENALTDMYAACGE 266
           +   + P  V    VL ACA ++ L+ GK  H  +   K +  ++ILEN+L  MYA CG 
Sbjct: 116 D---LQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 267 MGFALEIFGNIKN-KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
           +  A  +F  +   + V SW A++  Y   G                             
Sbjct: 173 LEDAKRLFERMSGRRSVSSWNAMIAAYAQSGH---------------------------- 204

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
              F EA+ L+ +M   ++ P   T  S+L+AC+NLG L+ G  +   I     + D+ +
Sbjct: 205 ---FEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSL 258

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            NAL+ MY +C  ++ A ++F+ + R+D  +W+AMI   A     D++++ +S+M    +
Sbjct: 259 QNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGV 318

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
            P+  T+  VL AC   G +  GR    D  + +G +    +   +VDL    G L+EA 
Sbjct: 319 RPNYYTFASVLLACASVGDLRAGRAVH-DQILGNGYKITLVNGTALVDLYTSYGSLDEAR 377

Query: 506 EVIKNMPMKPNSIVWGALLG--ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563
            +   +  +   + W  L+G  + + HR   +      +     P  + +Y     + +A
Sbjct: 378 SLFDQIENRDEGL-WTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSC---VISA 433

Query: 564 CNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           C     F + RQ   D           IE +G++ +FV
Sbjct: 434 CASLGAFADARQAHSD-----------IEADGMISDFV 460


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/730 (33%), Positives = 397/730 (54%), Gaps = 48/730 (6%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVT----FCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
           Q H++ +K G   +  +  KL+     + C    D+     V + IP P++  ++++I  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADL-----VLQSIPDPTIYSFSSLIYA 90

Query: 90  YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
            ++       + ++  M    + PD++  P L K      A + GK++HC     G D  
Sbjct: 91  LTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD 150

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT-------------------------- 183
            FVQ ++   Y  CG +  AR +FD     DVVT                          
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES 210

Query: 184 ---------WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
                    WN + SG+ R     E   +F ++   G  P  VT+  VL +    + L++
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNM 270

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G+  H YV +  ++ +  + +A+ DMY   G +   + +F   +  +     A +TG   
Sbjct: 271 GRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSR 330

Query: 295 RGQVDMARQYFD----QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
            G VD A + F+    Q  E + V WT++I G  +  +  EAL LFREMQ + ++P+  T
Sbjct: 331 NGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVT 390

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           I S+L AC N+ AL  G     +  +  + +++ VG+ALIDMY KCG +  +Q VF  M 
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMP 450

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            K+   W +++ G +++G   + + +F  ++R  + PD +++  +LSAC   G+ DEG +
Sbjct: 451 TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK 510

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           YF  M+ ++GI+P   HY CMV+LLGRAG L EA ++IK MP +P+S VWGALL +CR+ 
Sbjct: 511 YFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQ 570

Query: 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590
            + ++AE+AA+++  L+P+N   YVLL NIYAA   W     +R  +   G+KK PGCS 
Sbjct: 571 NNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630

Query: 591 IEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVY 650
           I++   V+  +AGDKSHPQ  +I  K+DE++ +++  G+ P++     DV E+++E+ ++
Sbjct: 631 IQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLW 690

Query: 651 QHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFK 710
            HSEKLA+ FGL+++  G  ++++KNLR+C DCH + K +S    RE+ +RD  RFHHFK
Sbjct: 691 GHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFK 750

Query: 711 HGSCSCKDYW 720
            G CSC D+W
Sbjct: 751 DGICSCGDFW 760


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/689 (35%), Positives = 392/689 (56%), Gaps = 33/689 (4%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           + +IH+  I  G+  +     KL+    +  G ++ A +VF K P+  V  WN MI  YS
Sbjct: 23  IAKIHALMILTGIFGHGNSNAKLIQ-SYARLGHIESARQVFDKSPQCGVDAWNAMIIAYS 81

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           R  +    + +Y  M    VRPD+ T+  +LK  TR + +  G+E     +  G+   VF
Sbjct: 82  RRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVF 141

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V  A+++ Y  CG++D A  +FD   + D+V W  M +G  +  Q  E   ++ +M +K 
Sbjct: 142 VGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKR 201

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V    V ++ ++ AC  L    +G   H Y+    I+ ++I++ +L DM           
Sbjct: 202 VEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDM----------- 250

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
                               Y   G +++A   F +M  ++ + W+A+I G+ +      
Sbjct: 251 --------------------YAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGN 290

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL L  +MQ+   +PD  ++VS+L AC+ +G L+LG+ V  YI + ++  D     A+ID
Sbjct: 291 ALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVR-RLHFDCVSSTAVID 349

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCG +  A+ VF ++  +D  +W A+I    I+G G+++L +F QM   ++ PD  T
Sbjct: 350 MYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHAT 409

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +  +LSA +H+G+V++GR +F+ M  ++ I+P+E HY CMVDLL RAG + EA E+I++M
Sbjct: 410 FASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESM 469

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
             +P   +W ALL  C  H    + EMAAK++LEL+PD+  +Y L+ N +A   RWD   
Sbjct: 470 ITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVA 529

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
           E+R+++   G+KK PG S++E+NG +H F+  DKSH Q +EI   L ++  ++K +GY+P
Sbjct: 530 EVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVP 589

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
               V  ++ EE KER +  HSE+LA+AFGL+++GPG  + I KNLR+C DCH   K +S
Sbjct: 590 KTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFIS 649

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + +RE++VRD  RFHHFK G CSC DYW
Sbjct: 650 KIVNREIVVRDVKRFHHFKDGVCSCGDYW 678


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 252/689 (36%), Positives = 383/689 (55%), Gaps = 34/689 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H   +KLGL    TV N L+   C  +    +A  VF  +    +  WN++I G ++
Sbjct: 335 QQVHCMALKLGLDLMLTVSNSLINMYCKLR-KFGFARTVFDNMSERDLISWNSVIAGIAQ 393

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVF 151
                  V +++ +L+  ++PD YT   +LK  +     +   K++H H +K    S  F
Sbjct: 394 NGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSF 453

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V  ALI  Y     +  A  +F+  +  D+V WNAM +GY +     +T KLF  M ++G
Sbjct: 454 VSTALIDAYSRNRCMKEAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQG 512

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
                 T+  V   C  L  ++ GK+ H Y  +     +L + + + DMY  CG+M  A 
Sbjct: 513 ERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQ 572

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
             F +I   D ++WT +++G I  G+            ER                    
Sbjct: 573 FAFDSIPVPDDVAWTTMISGCIENGE-----------EER-------------------- 601

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           A  +F +M+   + PDEFTI ++  A + L ALE G  +     K    ND FVG +L+D
Sbjct: 602 AFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVD 661

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCG ++ A  +F+ +   +   W AM+VGLA +G G ++L +F QM    I PD+VT
Sbjct: 662 MYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVT 721

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           ++GVLSAC+H+G+V E  ++   M   +GI+P   HY C+ D LGRAG + +A  +I++M
Sbjct: 722 FIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESM 781

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
            M+ ++ ++  LL ACRV  D E  +  A ++LEL+P + + YVLL N+YAA ++WD  +
Sbjct: 782 SMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMK 841

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
             R M+    +KK PG S IE+   +H FV  D+S+ QT+ IY K+ +M  D+K  GY+P
Sbjct: 842 LARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVP 901

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           +     +DV EE+KERA+Y HSEKLA+AFGL+S+ P   IR++KNLR+C DCH   K ++
Sbjct: 902 ETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIA 961

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            VY+RE+++RD  RFH FK G CSC DYW
Sbjct: 962 KVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 227/489 (46%), Gaps = 47/489 (9%)

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           + DM++SDV  D  TF  +L    +  ++  G+++HC  LK G D  + V N+LI+ YC 
Sbjct: 303 FADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCK 362

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
             +   AR +FD   + D+++WN++ +G  +     E   LF ++ R G+ P   T+  V
Sbjct: 363 LRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSV 422

Query: 223 LSACAKLKD-LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           L A + L + L + K+ H +  +   V +  +  AL D Y+               +N+ 
Sbjct: 423 LKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYS---------------RNR- 466

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
                      +   ++   R  FD       V W AM+ GY + +   + L LF  M  
Sbjct: 467 ----------CMKEAEILFERHNFD------LVAWNAMMAGYTQSHDGHKTLKLFALMHK 510

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
              R D+FT+ ++   C  L A+  G+ V  Y  K+    D++V + ++DMY KCGD+  
Sbjct: 511 QGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSA 570

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           AQ  F  +   D   WT MI G   NG  +++  +FSQM    ++PDE T   +  A + 
Sbjct: 571 AQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSC 630

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYG-CMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
              +++GR+  A+    +    N+   G  +VD+  + G +++A  + K + M  N   W
Sbjct: 631 LTALEQGRQIHANALKLNC--TNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM-NITAW 687

Query: 521 GALLGACRVHRDAEMAEMAAKQI--LELDPDNEAVYVLLCNIYAACNR----WDNFRELR 574
            A+L     H + +      KQ+  L + PD     V    + +AC+      + ++ +R
Sbjct: 688 NAMLVGLAQHGEGKETLQLFKQMKSLGIKPDK----VTFIGVLSACSHSGLVSEAYKHMR 743

Query: 575 QMILDRGIK 583
            M  D GIK
Sbjct: 744 SMHGDYGIK 752



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 134/584 (22%), Positives = 245/584 (41%), Gaps = 56/584 (9%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR-----IDSHKNGVLIYLDMLKSDVRPD 114
           S+ G + YA +VF K+P   +  WN+++  Y++     +++ +   L++  + +  V   
Sbjct: 85  SKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTS 144

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174
             T   +LK       V   +  H +  K G D   FV  AL++ Y   G+V   + +F+
Sbjct: 145 RMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFE 204

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
                DVV WN M   Y  +   +E   L       G+ P  +T+ L+        D D 
Sbjct: 205 EMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISG--DDSDA 262

Query: 235 GK-RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV---------IS 284
           G+ ++     +   V  +I  N     Y   G+    L+ F ++   DV         + 
Sbjct: 263 GQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILML 322

Query: 285 WTAIVTGYINRGQ---------------------VDM---------ARQYFDQMPERDYV 314
            TA+    +  GQ                     ++M         AR  FD M ERD +
Sbjct: 323 ATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLI 382

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG-ALELGEWVKTY 373
            W ++I G  +     EA+ LF ++    ++PD++T+ S+L A ++L   L L + V  +
Sbjct: 383 SWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVH 442

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
             K    +D FV  ALID Y +   +++A+ +F E    D   W AM+ G   +  G K+
Sbjct: 443 AIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKT 501

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           L +F+ M +     D+ T   V   C     +++G++  A   I+ G + +      ++D
Sbjct: 502 LKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHA-YAIKSGYDLDLWVSSGILD 560

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ--ILELDPDNE 551
           +  + G ++ A     ++P+ P+ + W  ++  C  + + E A     Q  ++ + PD E
Sbjct: 561 MYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPD-E 618

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTP--GCSMIEM 593
                L    +     +  R++    L       P  G S+++M
Sbjct: 619 FTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDM 662



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 180/402 (44%), Gaps = 36/402 (8%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P   T  + L +     E +   KQ+H   IK+  +++  V   L+    S    MK A 
Sbjct: 414 PDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALID-AYSRNRCMKEAE 472

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRI-DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            +F +     +  WN M+ GY++  D HK   L  L M K   R D++T   + K     
Sbjct: 473 ILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFAL-MHKQGERSDDFTLATVFKTCGFL 530

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            A+  GK++H + +K G+D  ++V + ++  Y  CG++  A+  FD     D V W  M 
Sbjct: 531 FAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMI 590

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           SG     + +    +F +M   GVLP   TI  +  A + L  L+ G++ H    +    
Sbjct: 591 SGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT 650

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            +  +  +L DMYA CG +  A  +F  I+  ++ +W A++ G    G+           
Sbjct: 651 NDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEG---------- 700

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL-ELG 367
                                +E L LF++M++  I+PD+ T + +L+AC++ G + E  
Sbjct: 701 ---------------------KETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAY 739

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
           + +++      +K +I   + L D   + G V++A+ +   M
Sbjct: 740 KHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESM 781



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 164/386 (42%), Gaps = 44/386 (11%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           F FL    T    +  GK  H  +L F  +   F+ N LIS Y  CG +  AR +FD   
Sbjct: 43  FGFLRNAITSS-DLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMP 101

Query: 178 KDDVVTWNAMFSGYKR-----VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
             D+V+WN++ + Y +     V+   +   LF  + +  V  + +T+  +L  C     +
Sbjct: 102 DRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
              +  H Y  +  +  +  +  AL ++Y   G++     +F  +  +DV+ W  ++  Y
Sbjct: 162 WASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAY 221

Query: 293 INRG----QVDMARQYFDQ--MPERDYVLWTAMIDG------------------------ 322
           +  G     +D++  +      P    +   A I G                        
Sbjct: 222 LEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEII 281

Query: 323 --------YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
                   YL   ++   L  F +M  S++  D+ T + +L     + +L LG+ V    
Sbjct: 282 FRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMA 341

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K  +   + V N+LI+MYCK      A+ VF  M  +D  +W ++I G+A NG   +++
Sbjct: 342 LKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAV 401

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACT 460
            +F Q+LR  + PD+ T   VL A +
Sbjct: 402 CLFMQLLRCGLKPDQYTMTSVLKAAS 427


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 395/706 (55%), Gaps = 37/706 (5%)

Query: 17  TPLISPIETCESMHQLKQIHSQ-TIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           T ++    + +++ + K IHS+ +   GL  +  ++N L+T   ++ G ++ A ++F ++
Sbjct: 125 TTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMY-AKCGSLEDAKRLFERM 183

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              SV  WN MI  Y++    +  + +Y DM   DV P   TF  +L   +    ++ G+
Sbjct: 184 SGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGR 240

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  +   G +  + +QNAL++ Y  C  +D A  IF    + DVV+W+AM + +    
Sbjct: 241 KIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETD 300

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
            FDE  + + +M+ +GV P   T   VL ACA + DL  G+  H                
Sbjct: 301 LFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHD--------------- 345

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
                           +I GN     +++ TA+V  Y + G +D AR  FDQ+  RD  L
Sbjct: 346 ----------------QILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGL 389

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS-ILTACANLGALELGEWVKTYI 374
           WT +I GY +       L L+REM+ +   P    I S +++ACA+LGA        + I
Sbjct: 390 WTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDI 449

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           + + + +D  +  +L++MY + G++E A++VF +M  +D   WT +I G A +G    +L
Sbjct: 450 EADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLAL 509

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            ++ +M      P E+T++ VL AC+H G+ ++G++ F  +   + + PN AHY C++DL
Sbjct: 510 GLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDL 569

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           L RAG L++A E+I  MP++PN + W +LLGA R+H+D + A  AA QI +LDP + A Y
Sbjct: 570 LSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASY 629

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL N++A          +R  ++ RG+KK  G S IE+   +HEF  GD SHP+ +EI+
Sbjct: 630 VLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIF 689

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
            +L  ++  +K  GY+P+  EV  DVGE++KE  +  HSEKLA+AFGLI++ PG T+RI 
Sbjct: 690 AELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIF 749

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             LR+C DCH   K +S +  RE+IVRD +RFH F+ G CSC DYW
Sbjct: 750 NTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 205/457 (44%), Gaps = 56/457 (12%)

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           ++VF+ N ++  Y  CG V  AR  FD   + +  +W +M + Y +   +     L+  M
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP-NLILENALTDMYAACGE 266
           +   + P  V    VL ACA +K L+ GK  H  +   K +  ++ILEN+L  MYA CG 
Sbjct: 116 D---LQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +  A  +F  +  + V SW A++  Y   G                              
Sbjct: 173 LEDAKRLFERMSGRSVSSWNAMIAAYAQSGH----------------------------- 203

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
             F EA+ L+ +M   ++ P   T  S+L+AC+NLG L+ G  +   I     + D+ + 
Sbjct: 204 --FEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQ 258

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           NAL+ MY +C  ++ A ++F+ + R+D  +W+AMI   A     D++++ +S+M    + 
Sbjct: 259 NALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVR 318

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P+  T+  VL AC   G +  GR    D  + +G +    +   +VDL    G L+EA  
Sbjct: 319 PNYYTFASVLLACASVGDLRAGRAVH-DQILGNGYKITLVNGTALVDLYTSYGSLDEARS 377

Query: 507 VIKNMPMKPNSIVWGALLG--ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
           +   +  +   + W  L+G  + + HR   +      +     P  + +Y     + +AC
Sbjct: 378 LFDQIENRDEGL-WTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSC---VISAC 433

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
                F + RQ   D           IE +G++ +FV
Sbjct: 434 ASLGAFADARQAHSD-----------IEADGMISDFV 459


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 252/704 (35%), Positives = 392/704 (55%), Gaps = 38/704 (5%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           ++ C S+  L   + IH+    LGL  +  V   L+    ++ G +  A  +F  I    
Sbjct: 114 LKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMY-AKCGHLYQAQTLFNSISHQD 172

Query: 80  --VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
             +  WN MI  +S    H   +     M ++ V P++ T   +L    +  A+  GK +
Sbjct: 173 RDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAI 232

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H + ++  F  +V +Q AL+  Y  C  +  AR IF+   K + V W+AM  GY      
Sbjct: 233 HAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSI 292

Query: 198 DETRKLFGEME-RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            +   L+ +M    G+ PT  T+  +L ACA+L DL  GK+ H ++ +  +  +  + N+
Sbjct: 293 SDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNS 352

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L  MYA CG M                               D A  + D+M  +D V +
Sbjct: 353 LISMYAKCGIM-------------------------------DNAVGFLDEMIAKDTVSY 381

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           +A+I G ++     +AL +FR+MQ+S I P   T++++L AC++L AL+ G     Y   
Sbjct: 382 SAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVV 441

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
               ND  + NA+IDMY KCG +  ++ +F  M  +D  +W  MI+G  I+G   ++L +
Sbjct: 442 RGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSL 501

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F ++    + PD+VT + VLSAC+H+G+V EG+ +F+ M+    I+P  AHY CMVDLL 
Sbjct: 502 FQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLA 561

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           RAG+L+EA   I+ MP  PN  +WGALL ACR H++ EM E  +K+I  L P+    +VL
Sbjct: 562 RAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVL 621

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           + NIY++  RWD+   +R +    G KK+PGCS +E++GV+H F+ G +SHPQ+  I  K
Sbjct: 622 MSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKK 681

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L E+   +K +GY  D S V  DV EE+KE+ +  HSEK+A+AFG++++ P   I + KN
Sbjct: 682 LQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKN 741

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+CVDCH   K ++++ +RE+ VRD +RFHHFK G C+C+D+W
Sbjct: 742 LRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 146/510 (28%), Positives = 250/510 (49%), Gaps = 40/510 (7%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
            + +++ A  VF +IP+PSV LWN MI+ Y+     +  + +YL ML+  V P N+TFPF
Sbjct: 53  SRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPF 112

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKD 179
           LLK  +   A++ G+ +H H    G    ++V  AL+  Y  CG +  A+ +F+ +S++D
Sbjct: 113 LLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQD 172

Query: 180 -DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D+V WNAM + +       +T     +M++ GV P S T+V +L    +   L  GK  
Sbjct: 173 RDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAI 232

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H Y        N++L+ AL DMYA C  + +A +IF  +  K+ + W+A++ GY+    +
Sbjct: 233 HAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSI 292

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
             A   +D M                        L ++       + P   T+ ++L AC
Sbjct: 293 SDALALYDDM------------------------LCIY------GLNPTPATLATMLRAC 322

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A L  L+ G+ +  ++ K+ +  D  VGN+LI MY KCG ++ A     EM+ KD  +++
Sbjct: 323 AQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYS 382

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           A+I G   NG+ +K+L +F QM  + I P   T + +L AC+H   +  G       T+ 
Sbjct: 383 AIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHG-YTVV 441

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA--EMA 536
            G   + +    ++D+  + G +  + E+   M  + + I W  ++    +H      ++
Sbjct: 442 RGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNR-DIISWNTMIIGYGIHGLCVEALS 500

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNR 566
                Q L L PD+    V L  + +AC+ 
Sbjct: 501 LFQELQALGLKPDD----VTLIAVLSACSH 526



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 197/409 (48%), Gaps = 38/409 (9%)

Query: 4   NSSISP-PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
            + ++P  STL    P I       ++HQ K IH+  I+     N  +Q  L+    ++ 
Sbjct: 203 QAGVTPNSSTLVSILPTIG---QANALHQGKAIHAYYIRNFFFDNVVLQTALLDMY-AKC 258

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFL 121
             + YA K+F  + + +   W+ MI GY   DS  + + +Y DML    + P   T   +
Sbjct: 259 HLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATM 318

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L+   +   ++ GK+LHCH++K G D    V N+LIS Y  CG +D A G  D     D 
Sbjct: 319 LRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDT 378

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           V+++A+ SG  +    ++   +F +M+  G+ P   T++ +L AC+ L  L  G   H Y
Sbjct: 379 VSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGY 438

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
                   +  + NA+ DMY+ CG++  + EIF  ++N+D+ISW  ++ GY   G     
Sbjct: 439 TVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLC--- 495

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                        EAL+LF+E+Q   ++PD+ T++++L+AC++ 
Sbjct: 496 ----------------------------VEALSLFQELQALGLKPDDVTLIAVLSACSHS 527

Query: 362 GALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
           G +  G+ W  +      +K  +     ++D+  + G++++A    + M
Sbjct: 528 GLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRM 576



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 122/247 (49%), Gaps = 4/247 (1%)

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           T +   +I+R ++ +AR  FDQ+P+   VLW  MI  Y     F++++ L+  M    + 
Sbjct: 45  TQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVT 104

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           P  FT   +L AC++L AL+LG  + T+     +  D++V  AL+ MY KCG + +AQ +
Sbjct: 105 PTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTL 164

Query: 406 FREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
           F  +  +D+    W AMI   + +    +++   +QM +A + P+  T V +L       
Sbjct: 165 FNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQAN 224

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
            + +G+   A   I++    N      ++D+  +  HL      I N   K N + W A+
Sbjct: 225 ALHQGKAIHA-YYIRNFFFDNVVLQTALLDMYAKC-HLLFYARKIFNTVNKKNDVCWSAM 282

Query: 524 LGACRVH 530
           +G   +H
Sbjct: 283 IGGYVLH 289


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/686 (36%), Positives = 381/686 (55%), Gaps = 36/686 (5%)

Query: 40  IKLGLL-TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKN 98
           IK G L ++  V   L+      +GD+  A KVF K+P  +   W  MI    +      
Sbjct: 195 IKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGE 254

Query: 99  GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
            + ++LDM+ S   PD +T   ++        +  G++LH   ++ G      V   LI+
Sbjct: 255 AIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLIN 314

Query: 159 TYCLC---GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE-TRKLFGEMERKGVLP 214
            Y  C   G +  AR IFD     +V +W AM +GY +   +DE    LF  M    V+P
Sbjct: 315 MYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIP 374

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
              T    L ACA L  L +G++   +  +        + N+L  MYA            
Sbjct: 375 NHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYA------------ 422

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
                                G++D AR+ FD + E++ + +  +ID Y +     EAL 
Sbjct: 423 -------------------RSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALE 463

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LF E++   +    FT  S+L+  A++G +  GE +   + K+ +K +  V NALI MY 
Sbjct: 464 LFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYS 523

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
           +CG++E A +VF +M  ++  +WT++I G A +G   ++L++F +ML   + P+EVTY+ 
Sbjct: 524 RCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIA 583

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           VLSAC+H G+V+EG ++F  M  +HG+ P   HY C+VD+LGR+G L+EA++ I +MP K
Sbjct: 584 VLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYK 643

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
            +++VW   LGACRVH + E+ + AAK I+E +P + A Y+LL N+YA+ ++WD    +R
Sbjct: 644 ADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIR 703

Query: 575 QMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS 634
           + + ++ + K  GCS +E+   VH+F  GD SHP+  EIY +L  ++  +K +GY+P++ 
Sbjct: 704 KAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLD 763

Query: 635 EVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVY 694
            V  DV EE KE+ ++QHSEK+A+AFGLIS+     IR+ KNLR+C DCH   K +SM  
Sbjct: 764 FVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMAT 823

Query: 695 DREVIVRDKTRFHHFKHGSCSCKDYW 720
            RE+IVRD  RFHH K G CSC +YW
Sbjct: 824 GREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 139/553 (25%), Positives = 255/553 (46%), Gaps = 50/553 (9%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP-SVCLWNTMIKGYSRI 93
           +H +  +  L  +    N L++   S+ G  + A  +FR +     +  W+ M+  ++  
Sbjct: 88  VHEKLTQSDLQLDSVTLNSLISLY-SKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANN 146

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF-DSSVFV 152
           +     +L ++DM+++   P+ Y F    +  +    V  G  +   V+K G+  S V V
Sbjct: 147 NMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCV 206

Query: 153 QNALISTYCLC-GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
              LI  +    G++  A  +F+   + + VTW  M +   +     E   LF +M   G
Sbjct: 207 GCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSG 266

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC---GEMG 268
             P   T+  V+SACA ++ L +G++ H       +  +  +   L +MYA C   G M 
Sbjct: 267 YEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMC 326

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A +IF  I + +V SWTA++TGY+ +G  D                             
Sbjct: 327 AARKIFDQILDHNVFSWTAMITGYVQKGGYD----------------------------- 357

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             EAL LFR M  +++ P+ FT  S L ACANL AL +GE V T+  K    +   V N+
Sbjct: 358 -EEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LI MY + G ++ A++ F  +  K+  ++  +I   A N + +++L++F+++    +   
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGAS 476

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             T+  +LS     G + +G +  A + I+ G++ N++    ++ +  R G++  A +V 
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIHARV-IKSGLKLNQSVCNALISMYSRCGNIESAFQVF 535

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLLCNIYAACNR- 566
           ++M  + N I W +++     H  A  A E+  K + E    NE  Y+    + +AC+  
Sbjct: 536 EDMEDR-NVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIA---VLSACSHV 591

Query: 567 ------WDNFREL 573
                 W +F+ +
Sbjct: 592 GLVNEGWKHFKSM 604



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 203/415 (48%), Gaps = 39/415 (9%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPR 77
           I  C +M  L   +Q+HSQ I+ GL  +  V   L+     CS  G M  A K+F +I  
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
            +V  W  MI GY +   +    L ++  M+ + V P+++TF   LK      A+  G++
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQ 397

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +  H +K GF S   V N+LIS Y   G +D AR  FD+ ++ +++++N +   Y +   
Sbjct: 398 VFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLN 457

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            +E  +LF E+E +G+  ++ T   +LS  A +  +  G++ H  V +  +  N  + NA
Sbjct: 458 SEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNA 517

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L  MY+ CG +  A ++F ++++++VISWT+I+TG+   G                    
Sbjct: 518 LISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFAT----------------- 560

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYID 375
                         +AL LF +M    +RP+E T +++L+AC+++G +  G +  K+   
Sbjct: 561 --------------QALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYT 606

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           ++ V   +     ++D+  + G + +A +    M  + D   W   +    ++G+
Sbjct: 607 EHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGN 661



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 178/418 (42%), Gaps = 74/418 (17%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M  +G  P   T  L L  C + +  D+G   H  + +  +  + +  N+L  +Y+ CG+
Sbjct: 57  MVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQ 116

Query: 267 MGFALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
              A  IF  +  ++D+ISW+A+V+ + N                               
Sbjct: 117 WEKATSIFRLMGSSRDLISWSAMVSCFANNNM---------------------------- 148

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK-VKNDIF 384
              FR  LT F +M  +   P+E+   +   AC+    + +G+ +  ++ K   +++D+ 
Sbjct: 149 --GFRALLT-FVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVC 205

Query: 385 VGNALIDMYCKC-GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
           VG  LIDM+ K  GD+  A +VF +M  ++  TWT MI  L   G+  +++D+F  M+ +
Sbjct: 206 VGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFS 265

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG------- 496
              PD  T  GV+SAC +  ++  G++  +   I+HG+  +     C++++         
Sbjct: 266 GYEPDRFTLSGVISACANMELLLLGQQLHSQ-AIRHGLTLDRCVGCCLINMYAKCSVDGS 324

Query: 497 ----------------------------RAGHLNEALEVIKNMPMK---PNSIVWGALLG 525
                                       + G+  EAL++ + M +    PN   + + L 
Sbjct: 325 MCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLK 384

Query: 526 ACRVHRDAEMAEMAAKQILELDPDN-EAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           AC       + E      ++L   +   V   L ++YA   R D+ R+   ++ ++ +
Sbjct: 385 ACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNL 442



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 5/200 (2%)

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
           R  +A++    M      PD  T    L  C    + ++G  V   + ++ ++ D    N
Sbjct: 46  RLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLN 105

Query: 388 ALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           +LI +Y KCG  EKA  +FR M   +D  +W+AM+   A N  G ++L  F  M+     
Sbjct: 106 SLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYY 165

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MVDLLGRA-GHLNEA 504
           P+E  +     AC+    V  G   F    I+ G   ++   GC ++D+  +  G L  A
Sbjct: 166 PNEYCFAAATRACSTAEFVSVGDSIFG-FVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSA 224

Query: 505 LEVIKNMPMKPNSIVWGALL 524
            +V + MP + N++ W  ++
Sbjct: 225 FKVFEKMPER-NAVTWTLMI 243


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/597 (39%), Positives = 354/597 (59%), Gaps = 24/597 (4%)

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK-QFDETRKLFGE 206
           S V   N  I+++    +++ AR +F+       VTWN M SGY +V  +  E  +LF +
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 207 MERKGVLPTSVTIVLVL------SACAKLKDLDVGKRA---------------HRYVKEC 245
           +     +  ++ +V  L      +A A    + V   A                +     
Sbjct: 131 IPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF 190

Query: 246 KIVP--NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
            ++P  N +  +A+   Y   G++  A E++ N+  K V+  TA++TGY+  G+V++A +
Sbjct: 191 SVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAER 250

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
            F +M  ++ V W +MI GY+   R  + L +F+ M  S +RP+  ++ S+L  C+NL A
Sbjct: 251 IFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSA 310

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           L LG  +   + K+ +  D     +LI MYCKCGD++ A ++F EM RKD  +W AMI G
Sbjct: 311 LPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISG 370

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            A +G G K+L +F +M   ++ PD +T+V V+ AC H G VD G +YF  M  + GIE 
Sbjct: 371 YAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEA 430

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              HY C++DLLGRAG L+EA+ +IK MP KP++ ++G LLGACR+H++ ++AE AA+ +
Sbjct: 431 KPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNL 490

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           L LDP +   YV L NIYAA N+WD   ++R+M+ +  + K PG S IE+  V HEF + 
Sbjct: 491 LNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSS 550

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           D+ HP+   I+ KL+E+   +K  GY+PD+     DV EE KE+ +  HSEKLA+AFGL+
Sbjct: 551 DRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLM 610

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + PG  IR+ KNLR+C DCHR  K +S +  RE+IVRD TRFHHF++G CSC DYW
Sbjct: 611 KTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 191/421 (45%), Gaps = 42/421 (9%)

Query: 49  TVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK 108
           +V   ++  C      ++ A   F K+P   +  WNT+I G+++    +       D+  
Sbjct: 136 SVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKA----FDLFS 191

Query: 109 SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM 168
                +  ++  ++ G+     +E  +EL+ +V   G   SV V+ A+++ Y   G+V++
Sbjct: 192 VMPEKNGVSWSAMISGYVEHGDLEAAEELYKNV---GM-KSVVVETAMLTGYMKFGKVEL 247

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           A  IF      ++VTWN+M +GY    + ++  K+F  M    V P  +++  VL  C+ 
Sbjct: 248 AERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSN 307

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           L  L +G++ H+ V +  +  +     +L  MY  CG++  A ++F  +  KDVISW A+
Sbjct: 308 LSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAM 367

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           ++GY   G                                 R+AL LF +M+   ++PD 
Sbjct: 368 ISGYAQHGAG-------------------------------RKALHLFDKMRNGTMKPDW 396

Query: 349 FTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407
            T V+++ AC + G ++LG ++ K+   +  ++        +ID+  + G +++A  + +
Sbjct: 397 ITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIK 456

Query: 408 EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT-YVGVLSACTHTGMVD 466
           EM  K        ++G A   H +  L  F+     ++ P   T YV + +    T   D
Sbjct: 457 EMPFKPHAAIYGTLLG-ACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWD 515

Query: 467 E 467
           +
Sbjct: 516 Q 516



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 126/275 (45%), Gaps = 29/275 (10%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A ++F+++   ++  WN+MI GY      ++G+ ++  M++S VRP+  +   +L
Sbjct: 243 GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL 302

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
            G +   A+  G+++H  V K           +LIS YC CG++D A  +F    + DV+
Sbjct: 303 LGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVI 362

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNAM SGY +     +   LF +M    + P  +T V V+ AC     +D+G +  + +
Sbjct: 363 SWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSM 422

Query: 243 -KECKIVPNLILENALTDMYAACGEMGFALE------------IFGNI-------KNKDV 282
            KE  I    +    + D+    G +  A+             I+G +       KN D+
Sbjct: 423 KKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDL 482

Query: 283 ISWTA---------IVTGYINRGQVDMARQYFDQM 308
             + A           TGY+    +  A   +DQ+
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQV 517


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/703 (35%), Positives = 407/703 (57%), Gaps = 8/703 (1%)

Query: 25   TCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR-KIPRPSVCLW 83
            T E  H +K +H+Q IKL    NP    K +       GD   A  VF   +PR +   W
Sbjct: 432  TDEQEHGIKMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPR-NYLKW 490

Query: 84   NTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
            N+ ++ +       + VL ++ ++    V  D+  +   LK  TR + +  G E+H  ++
Sbjct: 491  NSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLI 550

Query: 143  KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
            K GFD  V+++ AL++ Y  C  ++ A  +F      + + WN       + ++  +  +
Sbjct: 551  KRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVE 610

Query: 203  LFGEMERKGVLPTSVTIVLVLSAC-AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
            LF +M+   +   + TIV VL A  ++L  L++GK  H YV       ++ +  +L DMY
Sbjct: 611  LFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMY 670

Query: 262  AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER----DYVLWT 317
                 +  A  +F N+KN+++ +W ++V+GY  +G  + A +  +QM +     D V W 
Sbjct: 671  VKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWN 730

Query: 318  AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
             MI GY      +EAL  F +MQ   + P+  +I  +L ACA+L  L+ G+ +     +N
Sbjct: 731  GMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRN 790

Query: 378  KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
                D+FV  ALIDMY K   ++ A +VFR +  K   +W  MI+G AI G G +++ +F
Sbjct: 791  GFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVF 850

Query: 438  SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
            ++M +  + PD +T+  +LSAC ++G++ EG +YF  M   + I P   HY CMVDLLGR
Sbjct: 851  NEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGR 910

Query: 498  AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
            AG+L+EA ++I  MP+KP++ +WGALLG+CR+H++ + AE AAK + +L+P+N A Y+L+
Sbjct: 911  AGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILM 970

Query: 558  CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
             N+Y+  NRW++   LR+++   G++     S I++N  VH F + +K HP   +IY +L
Sbjct: 971  MNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFEL 1030

Query: 618  DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
             ++ S++K +GY+PD++ V+ ++ E +K++ +  H+EKLA+ +GLI    G  IR++KN 
Sbjct: 1031 YQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNT 1090

Query: 678  RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            R+C DCH  AK +S+V  RE+ +RD  RFHHF+ G CSC D+W
Sbjct: 1091 RICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1133


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/559 (41%), Positives = 345/559 (61%), Gaps = 6/559 (1%)

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRV----KQFDETRKLFGEMERKGVLPTSVTIVL 221
           +D A  I D S K  +   N+M   + +     K FD  R++        + P + T+  
Sbjct: 56  LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSS--GNDLKPDNYTVNF 113

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           ++ AC  L+  + G + H          +  ++  L  +YA  G +    ++F +I   D
Sbjct: 114 LVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPD 173

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
            +  TA+VT     G V  AR+ F+ MPERD + W AMI GY +V   REAL +F  MQ 
Sbjct: 174 FVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQL 233

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             ++ +   ++S+L+AC  LGAL+ G W  +YI++NK+K  + +   L+D+Y KCGD+EK
Sbjct: 234 EGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEK 293

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A  VF  M  K+ +TW++ + GLA+NG G+K L++FS M +  + P+ VT+V VL  C+ 
Sbjct: 294 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSV 353

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
            G VDEG+ +F  M  + GIEP   HYGC+VDL  RAG L +A+ +I+ MPMKP++ VW 
Sbjct: 354 VGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWS 413

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
           +LL A R++++ E+  +A+K++LEL+  N   YVLL NIYA  N WDN   +RQ +  +G
Sbjct: 414 SLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKG 473

Query: 582 IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
           ++K PGCS++E+NG VHEF  GDKSHP+  +I     +++  L+  GY  D + V  D+ 
Sbjct: 474 VRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDID 533

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
           EE+KE A+  HSEK A+AFG++S    V IRIVKNLR+C DCH+++ ++S +++RE+IVR
Sbjct: 534 EEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 593

Query: 702 DKTRFHHFKHGSCSCKDYW 720
           D+ RFHHFK G CSC  +W
Sbjct: 594 DRNRFHHFKDGHCSCNGFW 612



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 207/441 (46%), Gaps = 69/441 (15%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIP 76
           P I+ +++  +  +++QIH++    G L +  +    V     S+   + YA ++  +  
Sbjct: 8   PAIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSE 67

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS--DVRPDNYTFPFLLKGFTRDIAVEFG 134
           +P++   N+MI+ + +    +     Y  +L S  D++PDNYT  FL++  T     E G
Sbjct: 68  KPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETG 127

Query: 135 KELHCHVLKFGFDSSVFVQNALISTY----CL---------------------------C 163
            ++H   ++ GFD+   VQ  LIS Y    CL                           C
Sbjct: 128 LQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARC 187

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G+V  AR +F+   + D + WNAM SGY +V +  E   +F  M+ +GV    V ++ VL
Sbjct: 188 GDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVL 247

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           SAC +L  LD G+ AH Y++  KI   + L   L D+YA CG+M  A+E+F  ++ K+V 
Sbjct: 248 SACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVY 307

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFREMQTS 342
           +W++ + G                                L +N F E  L LF  M+  
Sbjct: 308 TWSSALNG--------------------------------LAMNGFGEKCLELFSLMKQD 335

Query: 343 NIRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
            + P+  T VS+L  C+ +G ++ G+    +  ++  ++  +     L+D+Y + G +E 
Sbjct: 336 GVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLED 395

Query: 402 AQRVFREM-LRKDKFTWTAMI 421
           A  + ++M ++     W++++
Sbjct: 396 AVSIIQQMPMKPHAAVWSSLL 416


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/597 (39%), Positives = 353/597 (59%), Gaps = 24/597 (4%)

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK-QFDETRKLFGE 206
           S V   N  I+++    +++ AR +F+       VTWN M SGY +V  +  E  +LF +
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 207 MERKGVLPTSVTIVLVL------SACAKLKDLDVGKRA---------------HRYVKEC 245
           +     +  ++ +V  L      +A A    + V   A                +     
Sbjct: 131 IPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF 190

Query: 246 KIVP--NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
            ++P  N +  +A+   Y   G++  A E++ N+  K V+  TA++TGY+  G+V++A +
Sbjct: 191 SVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAER 250

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
            F +M  ++ V W +MI GY+   R  + L +F+ M  S +RP+  ++ S+L  C+NL A
Sbjct: 251 IFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSA 310

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           L LG  +   + K+ +  D     +LI MYCKCGD++ A ++F EM RKD  TW AMI G
Sbjct: 311 LPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISG 370

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            A +G G K+L +F +M   ++ PD +T+V V+ AC H G VD G +YF  M  + GIE 
Sbjct: 371 YAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEA 430

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              HY C++DLLGRAG L+EA+ +IK MP  P++ ++G LLGACR+H++ ++AE AA+ +
Sbjct: 431 KPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNL 490

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           L LDP +   YV L NIYAA N+WD   ++R+M+ +  + K PG S IE+  V HEF + 
Sbjct: 491 LNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSS 550

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           D+ HP+   I+ KL+E+   +K  GY+PD+     DV EE KE+ +  HSEKLA+AFGL+
Sbjct: 551 DRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLM 610

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + PG  IR+ KNLR+C DCHR  K +S +  RE+IVRD TRFHHF++G CSC DYW
Sbjct: 611 KTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 192/424 (45%), Gaps = 48/424 (11%)

Query: 49  TVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK 108
           +V   ++  C      +K A   F K+P   +  WNT+I G+++    +       D+  
Sbjct: 136 SVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKA----FDLFS 191

Query: 109 SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM 168
                +  ++  ++ G+     +E  +EL+ +V   G   SV V+ A+++ Y   G+V++
Sbjct: 192 VMPEKNGVSWSAMISGYVEHGDLEAAEELYKNV---GM-KSVVVETAMLTGYMKFGKVEL 247

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           A  IF      ++VTWN+M +GY    + ++  K+F  M    V P  +++  VL  C+ 
Sbjct: 248 AERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSN 307

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           L  L +G++ H+ V +  +  +     +L  MY  CG++  A ++F  +  KDVI+W A+
Sbjct: 308 LSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAM 367

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           ++GY   G                                 R+AL LF +M+   ++PD 
Sbjct: 368 ISGYAQHGAG-------------------------------RKALHLFDKMRNGTMKPDW 396

Query: 349 FTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407
            T V+++ AC + G ++LG ++ K+   +  ++        +ID+  + G +++A  + +
Sbjct: 397 ITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIK 456

Query: 408 EMLRKDKFTWTAMIVGLAING---HGDKSLDMFSQMLRASIIPDEVT-YVGVLSACTHTG 463
           EM     FT  A I G  +     H +  L  F+     ++ P   T YV + +    T 
Sbjct: 457 EM----PFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATN 512

Query: 464 MVDE 467
             D+
Sbjct: 513 KWDQ 516



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 126/275 (45%), Gaps = 29/275 (10%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A ++F+++   ++  WN+MI GY      ++G+ ++  M++S VRP+  +   +L
Sbjct: 243 GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL 302

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
            G +   A+  G+++H  V K           +LIS YC CG++D A  +F    + DV+
Sbjct: 303 LGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVI 362

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           TWNAM SGY +     +   LF +M    + P  +T V V+ AC     +D+G +  + +
Sbjct: 363 TWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSM 422

Query: 243 -KECKIVPNLILENALTDMYAACG----------EMGFA--LEIFGNI-------KNKDV 282
            KE  I    +    + D+    G          EM F     I+G +       KN D+
Sbjct: 423 KKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDL 482

Query: 283 ISWTA---------IVTGYINRGQVDMARQYFDQM 308
             + A           TGY+    +  A   +DQ+
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQV 517


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/695 (36%), Positives = 392/695 (56%), Gaps = 43/695 (6%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQ+H Q IK G + + +V   LV      +  ++   +VF ++   +V  W +++ GY +
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTE-SVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              ++  + ++  M    ++P+ +TF  +L G   D AVE G ++H  V+K G DS++FV
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            N++++ Y     V  A+ +FD     + V+WN+M +G+       E  +LF  M  +GV
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN-----LILENALTDMYAACGEM 267
             T      V+  CA +K++   K+ H     C+++ N     L ++ AL   Y+ C E+
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLH-----CQVIKNGSDFDLNIKTALMVAYSKCSEI 345

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A ++F             ++ G  N                   V WTA+I GY++  
Sbjct: 346 DDAFKLF------------CMMHGVQN------------------VVSWTAIISGYVQNG 375

Query: 328 RFREALTLFREMQ-TSNIRPDEFTIVSILTACAN-LGALELGEWVKTYIDKNKVKNDIFV 385
           R   A+ LF +M+    + P+EFT  S+L ACA    ++E G+   +   K+   N + V
Sbjct: 376 RTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCV 435

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            +AL+ MY K G++E A  VF+  + +D  +W +MI G A +G G KSL +F +M   ++
Sbjct: 436 SSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNL 495

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
             D +T++GV+SACTH G+V+EG+ YF  M   + I P   HY CMVDL  RAG L +A+
Sbjct: 496 ELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAM 555

Query: 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
           ++I  MP    + +W  LL ACRVH + ++ E+AA++++ L P + A YVLL NIYA   
Sbjct: 556 DLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAG 615

Query: 566 RWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625
            W    ++R+++  + +KK  G S IE+      F+AGD SHPQ+  IYLKL+E++  LK
Sbjct: 616 NWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLK 675

Query: 626 FVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHR 685
             GY PD   V  DV EE KE  + QHSE+LA+AFGLI++ PG  I+IVKNLR+C DCH 
Sbjct: 676 DAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHT 735

Query: 686 MAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + KL+S +  R+++VRD  RFHHFK GSCSC DYW
Sbjct: 736 VIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+  T  + L +      S+ Q KQ HS +IK G      V + LVT   +++G+++ A 
Sbjct: 395 PNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTM-YAKRGNIESAN 453

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF++     +  WN+MI GY++    K  + I+ +M   ++  D  TF  ++   T   
Sbjct: 454 EVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAG 513

Query: 130 AVEFGK 135
            V  G+
Sbjct: 514 LVNEGQ 519


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/586 (39%), Positives = 353/586 (60%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           + +HCH +K       FV   L+  YC    +D A  +F  +   +V  + ++  G+   
Sbjct: 44  QSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSF 103

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
             + +   LF +M RK VL  +  +  +L AC   + L  GK  H  V +  +  +  + 
Sbjct: 104 GSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIA 163

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
             L ++Y  CG +  A ++F  +  +DV++ T ++    + G V+ A + F++M  RD V
Sbjct: 164 LKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTV 223

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            WT +IDG +R   F   L +FREMQ   + P+E T V +L+ACA LGALELG W+  Y+
Sbjct: 224 CWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYM 283

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K  V+ + FV  ALI+MY +CGD+++AQ +F  +  KD  T+ +MI GLA++G   +++
Sbjct: 284 RKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAV 343

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++FS+ML+  + P+ +T+VGVL+AC+H G+VD G E F  M + HGIEP   HYGCMVD+
Sbjct: 344 ELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDI 403

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGR G L EA + I  M ++ +  +  +LL AC++H++  M E  AK + E    +   +
Sbjct: 404 LGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSF 463

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           ++L N YA+  RW    E+R+ +   GI K PGCS IE+N  +HEF +GD  HP+ K IY
Sbjct: 464 IMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIY 523

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
            KL+E+    KF GY+P       D+ +E KE A+  HSE+LA+ +GL+S+    T+R+ 
Sbjct: 524 KKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICYGLVSTEAYTTLRVG 583

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+C DCH M KL++ +  R+++VRD+ RFHHF++G CSCKDYW
Sbjct: 584 KNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 206/450 (45%), Gaps = 72/450 (16%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
            ++ IH   IK     +P V  +L+   C +   + +A K+FR    P+V L+ ++I G+
Sbjct: 42  HVQSIHCHAIKTRTSQDPFVAFELLRVYC-KVNYIDHAIKLFRCTQNPNVYLYTSLIDGF 100

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK--FGFDS 148
               S+ + + ++  M++  V  DNY    +LK      A+  GKE+H  VLK   G D 
Sbjct: 101 VSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDR 160

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT------------------------- 183
           S+ ++  L+  Y  CG ++ AR +FD   + DVV                          
Sbjct: 161 SIALK--LVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMG 218

Query: 184 ------WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
                 W  +  G  R  +F+   ++F EM+ KGV P  VT V VLSACA+L  L++G+ 
Sbjct: 219 TRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRW 278

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H Y+++C +  N  +  AL +MY+ CG++  A  +F  ++ KDV ++ +++ G    G+
Sbjct: 279 IHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGK 338

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
                                            EA+ LF EM    +RP+  T V +L A
Sbjct: 339 SI-------------------------------EAVELFSEMLKERVRPNGITFVGVLNA 367

Query: 358 CANLGALEL-GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA-QRVFREMLRKDKF 415
           C++ G ++L GE  ++    + ++ ++     ++D+  + G +E+A   + R  +  D  
Sbjct: 368 CSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDK 427

Query: 416 TWTAMIVGLAIN---GHGDKSLDMFSQMLR 442
              +++    I+   G G+K   + S+  R
Sbjct: 428 MLCSLLSACKIHKNIGMGEKVAKLLSEHYR 457


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/553 (42%), Positives = 342/553 (61%), Gaps = 32/553 (5%)

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           AR +FD   + D+V +N++  GY R     E   LF E+    +LP + T   +L ACA 
Sbjct: 84  ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
            K L+ G++ H    +  +  N+ +   L +MY  C +                      
Sbjct: 144 AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECED---------------------- 181

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
                    VD AR  FD++ E   V + AMI GY R NR  EAL+LFREMQ  N++P+E
Sbjct: 182 ---------VDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNE 232

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T++S+L++CA LG+L+LG+W+  Y  K+     + V  ALIDM+ KCG ++ A  +F  
Sbjct: 233 ITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFEN 292

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M  KD   W+AMIV  A +G  + S+ MF +M   ++ PDE+T++G+L+AC+HTG+V+EG
Sbjct: 293 MRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEG 352

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           REYF+ M  + GI P+  HYG MVDLLGRAGHL +A E I  +P+ P  ++W  LL AC 
Sbjct: 353 REYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACS 412

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
            H + E+AE  +++ILELD  +   YV+L N+YA   +W+    LR+++ DR   K PGC
Sbjct: 413 SHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGC 472

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF-LDVGEEDKER 647
           S IE+N VVHEF +GD     T +++  LDEM  +LK  GY+PD S V   D+G+++KE 
Sbjct: 473 SSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEI 532

Query: 648 AVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFH 707
            +  HSEKLA+AFGL+++ PG TIR+VKNLR+C DCH  AKL+S+++ R+V++RD  RFH
Sbjct: 533 TLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFH 592

Query: 708 HFKHGSCSCKDYW 720
           HF+ G CSC+D+W
Sbjct: 593 HFEDGKCSCRDFW 605



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/383 (31%), Positives = 200/383 (52%), Gaps = 35/383 (9%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE--KGDMKYACKVFRKIPRPSV 80
           I  C S  +L QI +  IK     + +   KL+ FC     +  M YA  +F  +  P +
Sbjct: 38  ISKCNSERELMQIQAYAIK-SHQEDVSFNTKLINFCTESPTESSMSYARHLFDAMSEPDI 96

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            ++N++ +GYSR  +      +++++L+ D+ PDNYTFP LLK      A+E G++LHC 
Sbjct: 97  VIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCL 156

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
            +K G D +V+V   LI+ Y  C +VD AR +FD   +  VV +NAM +GY R  + +E 
Sbjct: 157 SMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEA 216

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             LF EM+ K + P  +T++ VLS+CA L  LD+GK  H Y K+      + +  AL DM
Sbjct: 217 LSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDM 276

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           +A CG +  A+ IF N++ KD  +W+A++  Y N GQ +                     
Sbjct: 277 FAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAE--------------------- 315

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKV 379
                      ++ +F  M++ N++PDE T + +L AC++ G +E G E+    + +  +
Sbjct: 316 ----------NSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGI 365

Query: 380 KNDIFVGNALIDMYCKCGDVEKA 402
              I    +++D+  + G +E A
Sbjct: 366 VPSIKHYGSMVDLLGRAGHLEDA 388



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 139/296 (46%), Gaps = 3/296 (1%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+      +++ + +Q+H  ++KLG+  N  V   L+    +E  D+  A  VF +I  P
Sbjct: 137 LLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMY-TECEDVDAARCVFDRIVEP 195

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            V  +N MI GY+R +     + ++ +M   +++P+  T   +L       +++ GK +H
Sbjct: 196 CVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIH 255

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
            +  K GF   V V  ALI  +  CG +D A  IF+     D   W+AM   Y    Q +
Sbjct: 256 EYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAE 315

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECKIVPNLILENAL 257
            +  +F  M  + V P  +T + +L+AC+    ++ G+    + V E  IVP++    ++
Sbjct: 316 NSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSM 375

Query: 258 TDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
            D+    G +  A E    +  +   + W  ++    +   +++A +  +++ E D
Sbjct: 376 VDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELD 431


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/766 (33%), Positives = 401/766 (52%), Gaps = 96/766 (12%)

Query: 49  TVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK 108
           T  N +VT  C  +  M  A  +F+++P+ ++  W  MI GY RI+ H  G  I+  M  
Sbjct: 158 TSWNSMVTGYCHSR-QMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHH 216

Query: 109 SDVRPDNYTF--------------------PFLLK-GF--------------TRD----- 128
               PD   F                    P +LK GF              TRD     
Sbjct: 217 EGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALD 276

Query: 129 IAVEF---------------------GKELHCHVLKFGFD--SSVFVQNALISTYCLCGE 165
           IA++F                     G  +   +  +G D   S+  Q AL++    CG 
Sbjct: 277 IAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGR 336

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM------------------ 207
           +  AR +F+      VV+WNAM +GY +    DE ++LF  M                  
Sbjct: 337 ITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQN 396

Query: 208 -------------ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
                         R G+LP+  ++     AC+ +  L+ G++ H    +     N  + 
Sbjct: 397 GRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVC 456

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           NAL  MY  C  M +  ++F  ++ KD +SW + +   +    ++ AR  FD M  RD V
Sbjct: 457 NALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVV 516

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            WT +I  Y +  R  EA+  F+ M   + +P+   +  +L+ C  LG+ +LG+ + T  
Sbjct: 517 SWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVA 576

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K+ + +++ V NAL+ MY KCG  + + +VF  M  +D FTW   I G A +G G +++
Sbjct: 577 IKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQHGLGREAI 635

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            M+  M    ++P+EVT+VG+L+AC+H G+VDEG ++F  M+  +G+ P   HY CMVDL
Sbjct: 636 KMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDL 695

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGR G +  A + I +MP++P++++W ALLGAC++H++AE+   AA+++   +P N   Y
Sbjct: 696 LGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNY 755

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           V+L NIY++   W    ELR+++  RG+ K PGCS +++   VH FV GDK H + +EI 
Sbjct: 756 VMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEID 815

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L ++ + L+  GY+PD   V  D+ EE KE ++  HSEKLA+A+GL+ +  G+ I+I+
Sbjct: 816 YTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIM 875

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+C DCH   K VS V  R++ +RD  RFHHF++GSCSC D+W
Sbjct: 876 KNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 207/487 (42%), Gaps = 81/487 (16%)

Query: 47  NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT--------------------- 85
           N    N +V+ C  + GD+  A ++F  +P   V  WN+                     
Sbjct: 125 NTVAWNAMVS-CYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQM 183

Query: 86  ----------MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT--RDIAVEF 133
                     MI GY RI+ H  G  I+  M      PD   F  +L   T  +D+ V  
Sbjct: 184 PQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVL- 242

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCL-CGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            + L   VLK GF+S V +  ++++ Y      +D+A   FD   + +  TW+ M +   
Sbjct: 243 -EVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALS 301

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
              + D    ++G                                        K +P+  
Sbjct: 302 HGGRIDAAIAVYGR------------------------------------DPVKSIPS-- 323

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
            + AL    A CG +  A  +F  I +  V+SW A++TGY+  G VD A++ FD+MP R+
Sbjct: 324 -QTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRN 382

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            + W  MI GY +  R  EAL L + +  + + P   ++ S   AC+++GALE G  V +
Sbjct: 383 TISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHS 442

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
              K   + + +V NALI MY KC ++E  ++VF  M  KD  +W + I  L  N   + 
Sbjct: 443 LAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLED 502

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +  +F  ML      D V++  ++SA       DE  E+F  M  +H  +PN      ++
Sbjct: 503 ARHIFDNMLSR----DVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE-KPNSPILTILL 557

Query: 493 DLLGRAG 499
            + G  G
Sbjct: 558 SVCGGLG 564



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 181/376 (48%), Gaps = 19/376 (5%)

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
             +A I      G +  AR +FD     D++ WN+M S Y      ++ R LF  +    
Sbjct: 35  AHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGN 94

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V     T  ++LS  A+L  +   +R    + E     N +  NA+   Y   G++  A 
Sbjct: 95  VR----TATILLSGYARLGRVLDARRVFDGMPE----RNTVAWNAMVSCYVQNGDITMAR 146

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            +F  + ++DV SW ++VTGY +  Q+  A   F QMP+R+ V WT MI GY+R+ +  +
Sbjct: 147 RLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGK 206

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
              +FR M      PD+    S+L+A   L  L + E ++  + K   ++D+ +G ++++
Sbjct: 207 GWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILN 266

Query: 392 MYCK-CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           +Y +    ++ A + F  M+ ++++TW+ MI  L+  G  D ++ ++ +    S IP + 
Sbjct: 267 VYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKS-IPSQT 325

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
             +  L+ C   G + E R  F  +      +P    +  M+    + G ++EA E+   
Sbjct: 326 ALLTGLARC---GRITEARILFEQIP-----DPIVVSWNAMITGYMQNGMVDEAKELFDR 377

Query: 511 MPMKPNSIVWGALLGA 526
           MP + N+I W  ++  
Sbjct: 378 MPFR-NTISWAGMIAG 392


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/602 (40%), Positives = 357/602 (59%), Gaps = 34/602 (5%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           LLK  T    +  GK +H  +L   F   + +QN L++ Y  CG++  AR +FD     D
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV--GKRA 238
           VVTW A+ +GY +  +  +   L  EM R G+ P   T+  +L A + +   DV  G++ 
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQL 140

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H          N+ +  A+ DMYA C  +                               
Sbjct: 141 HGLCLRYGYDSNVYVSCAILDMYARCHHL------------------------------- 169

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
           + A+  FD M  ++ V W A+I GY R  +  +A  LF  M   N++P  FT  S+L AC
Sbjct: 170 EEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCAC 229

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A++G+LE G+WV   + K   K   FVGN L+DMY K G +E A++VF  + ++D  +W 
Sbjct: 230 ASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWN 289

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           +M+ G + +G G  +L  F +MLR  I P+++T++ VL+AC+H G++DEGR YF DM  +
Sbjct: 290 SMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYF-DMMKK 348

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           + +EP  +HY  MVDLLGRAGHL+ A++ I  MP+KP + VWGALLGACR+H++ E+   
Sbjct: 349 YNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGY 408

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           AA+ I ELD      +VLL NIYA   RW++  ++R+M+ + G+KK P CS +EM   VH
Sbjct: 409 AAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVH 468

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
            FVA D +HPQ +EI+   ++++  +K +GY+PD S V L + ++++E  +  HSEKLA+
Sbjct: 469 VFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLAL 528

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           AF L+++ PG TIRI KN+R+C DCH   K VS + +RE+IVRD  RFHHF  G+CSC+D
Sbjct: 529 AFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCED 588

Query: 719 YW 720
           YW
Sbjct: 589 YW 590



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 200/405 (49%), Gaps = 38/405 (9%)

Query: 23  IETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           ++ C  +++L +   IH+  +      +  +QN L+    ++ GD+ YA K+F ++    
Sbjct: 22  LKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLY-AKCGDLVYARKLFDEMSSRD 80

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR--DIAVEFGKEL 137
           V  W  +I GYS+ D  ++ +L+  +ML+  ++P+ +T   LLK  +      V  G++L
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQL 140

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H   L++G+DS+V+V  A++  Y  C  ++ A+ IFDV    + V+WNA+ +GY R  Q 
Sbjct: 141 HGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQG 200

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           D+   LF  M R+ V PT  T   VL ACA +  L+ GK  H  + +        + N L
Sbjct: 201 DKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTL 260

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            DMYA  G +  A ++F  +  +DV+SW +++TGY   G   +A Q F+           
Sbjct: 261 LDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFE----------- 309

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                               EM  + I P++ T + +LTAC++ G L+ G      + K 
Sbjct: 310 --------------------EMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKY 349

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            V+  I     ++D+  + G +++A +   EM ++     W A++
Sbjct: 350 NVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALL 394



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 97/176 (55%), Gaps = 4/176 (2%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           ++L  C +L  L  G+ +   +  ++ ++D+ + N L+++Y KCGD+  A+++F EM  +
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD--EGRE 470
           D  TWTA+I G + +     +L +  +MLR  + P++ T   +L A +  G  D  +GR+
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
               + +++G + N      ++D+  R  HL EA ++I ++ +  N + W AL+  
Sbjct: 140 LHG-LCLRYGYDSNVYVSCAILDMYARCHHLEEA-QLIFDVMVSKNEVSWNALIAG 193



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 9/193 (4%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           P+  T  + L +    C SM  L+Q   +H+  IK G      V N L+    ++ G ++
Sbjct: 217 PTHFTYSSVLCA----CASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMY-AKSGSIE 271

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
            A KVF ++ +  V  WN+M+ GYS+    K  +  + +ML++ + P++ TF  +L   +
Sbjct: 272 DAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACS 331

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA-RGIFDVSYKDDVVTWN 185
               ++ G+     + K+  +  +     ++      G +D A + I ++  K     W 
Sbjct: 332 HAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWG 391

Query: 186 AMFSGYKRVKQFD 198
           A+    +  K  +
Sbjct: 392 ALLGACRMHKNME 404


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/595 (38%), Positives = 359/595 (60%), Gaps = 44/595 (7%)

Query: 135 KELHCHVL-------KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
           ++LH H+L        F F  S  V    +S +   G ++ AR +F      ++ +WN++
Sbjct: 5   RQLHAHILTRPLPLSSFAFALSKIVAFCALSPF---GNINYARSVFAQIPHPNIFSWNSL 61

Query: 188 FSGYKRVKQFD-ETRKLFGEMERKGV-LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
             GY ++     E   LF ++   G  +P S T+  VL ACA +     G + H +V + 
Sbjct: 62  IKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKD 121

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
               +L ++ +L + Y  C E+GFA                               R+ F
Sbjct: 122 GFGSSLFVQTSLVNFYGKCEEIGFA-------------------------------RKVF 150

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
           ++MP R+ V WTAMI G+ RV    EA+ LFREMQ + I+PD  T+VS+++ACA  GAL+
Sbjct: 151 EEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALD 210

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
           +G W+  YI+K  V  D+ +  AL+DMY KCG +E+A++VF  M  KD   W++MI+G A
Sbjct: 211 IGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFA 270

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            +G    ++D F QML   + PD VT++ VLSAC H G+V  GR +++ M ++ GIEP+ 
Sbjct: 271 YHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLM-LEFGIEPSV 329

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HYGC VDLL R+G + EA  +   M + PN+  W +LL  C+  +   + E+ A+ +LE
Sbjct: 330 EHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLE 389

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           L+P N   Y+++ N+Y++ ++W+   ELR+++ ++ IK  PGCS IE++GVVHEFV GD+
Sbjct: 390 LEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQ 449

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           SHP+ K +   ++EM+  ++  GY P IS+V   V +E+KE A+ +HSE+ A+A+GL+ +
Sbjct: 450 SHPEVKMLREFMEEMSMRVRDSGYRPSISDVLHKVVDEEKECALSEHSERFAIAYGLLKT 509

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              + IR+VKNLR+CVDCH + K++S +Y+RE+IVRD+ RFH F  G+CSCKD+W
Sbjct: 510 RAPIVIRVVKNLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKFIKGTCSCKDFW 564



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 216/401 (53%), Gaps = 37/401 (9%)

Query: 29  MHQLKQIHSQ--TIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNT 85
           M  L+Q+H+   T  L L +     +K+V FC  S  G++ YA  VF +IP P++  WN+
Sbjct: 1   MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60

Query: 86  MIKGYSRIDS-HKNGVLIYLDMLKSDVR-PDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           +IKGYS+I +  K  + ++  + ++    P+++T  F+LK      A   G ++H HVLK
Sbjct: 61  LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLK 120

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
            GF SS+FVQ +L++ Y  C E+  AR +F+     ++V W AM SG+ RV   DE  +L
Sbjct: 121 DGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMEL 180

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           F EM++ G+ P ++T+V V+SACA    LD+G   H Y+++  ++ +L L  AL DMYA 
Sbjct: 181 FREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAK 240

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           CG +  A ++F ++  KD  +W++++ G+   G                           
Sbjct: 241 CGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLA------------------------- 275

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
                 ++A+  F++M  + + PD  T +++L+ACA+ G +  G    + + +  ++  +
Sbjct: 276 ------QDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSV 329

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVG 423
                 +D+ C+ G VE+A R+   M +  +  TW ++++G
Sbjct: 330 EHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMG 370



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 151/323 (46%), Gaps = 17/323 (5%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           Q+HS  +K G  ++  VQ  LV F   C E G   +A KVF ++P  ++  W  MI G++
Sbjct: 113 QVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIG---FARKVFEEMPVRNLVAWTAMISGHA 169

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           R+ +    + ++ +M K+ ++PD  T   ++       A++ G  LH ++ K+   + + 
Sbjct: 170 RVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLE 229

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           +  AL+  Y  CG ++ A+ +F      D   W++M  G+       +    F +M    
Sbjct: 230 LSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 289

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V P  VT + VLSACA    +  G+R    + E  I P++       D+    G +  A 
Sbjct: 290 VTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAY 349

Query: 272 EIFGNIK-NKDVISWTAIVTG-----YINRGQVDMARQYFDQMP--ERDYVLWTAMIDGY 323
            I   +K   +  +W +++ G      +N G++ +AR   +  P    +Y++ + +   Y
Sbjct: 350 RITTTMKIPPNAATWRSLLMGCKKKKLLNLGEI-VARYLLELEPLNAENYIMISNL---Y 405

Query: 324 LRVNRFREALTLFREMQTSNIRP 346
             ++++ +   L + M+   I+P
Sbjct: 406 SSLSQWEKMSELRKVMKEKCIKP 428



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 5/184 (2%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L+S +  C     L     +H+   K  +LT+  +   LV    ++ G ++ A +VF  +
Sbjct: 196 LVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMY-AKCGCIERAKQVFVHM 254

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P      W++MI G++     ++ +  +  ML+++V PD+ TF  +L        V  G+
Sbjct: 255 PVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGR 314

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA-RGIFDVSYKDDVVTWNAMFSGYKRV 194
                +L+FG + SV      +   C  G V+ A R    +    +  TW ++  G K+ 
Sbjct: 315 RFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKK 374

Query: 195 KQFD 198
           K  +
Sbjct: 375 KLLN 378


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/602 (41%), Positives = 364/602 (60%), Gaps = 18/602 (2%)

Query: 134 GKELHCHVLKFGFDSS--VFVQNALISTYCLCGEVDMARGIFD---VSYKDDVVTWNAMF 188
           G+ELH  +   G   +   ++ NAL   Y   GE+  A+ +FD   +S KD+V  W  + 
Sbjct: 25  GRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIPLSDKDNV-DWTTLL 83

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           S + R      + KLF EM RK V    V++V +   CAKL+DL  G++ H    +   +
Sbjct: 84  SSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFL 143

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            ++ + NAL DMY  CG +     IF  ++ K V+SWT ++   +    +   R+ FD+M
Sbjct: 144 TSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEM 203

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF-TIVSILTACANLGALELG 367
           PER+ V WT M+ GYL     RE L L  EM         F T+ S+L+ACA  G L +G
Sbjct: 204 PERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIG 263

Query: 368 EWVKTY-------IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
            WV  Y       + + +  + + VG AL+DMY KCG+++ + +VFR M +++  TW A+
Sbjct: 264 RWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNAL 323

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
             GLA++G G   +DMF +M+R  + PD++T+  +LSAC+H GMVDEG   F  +   +G
Sbjct: 324 FSGLAMHGKGRMVIDMFPEMVR-EVKPDDLTFTALLSACSHLGMVDEGWRCFHSLQF-YG 381

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           +EP   HY CMVD+LGRAG + EA  +++ MP+ PN +V G+LLG+C VH   E+AE   
Sbjct: 382 LEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEIAERIK 441

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
           ++++++ P +    +L+ N+Y A  R D    LR  + +RGI+K PG S I +N  VH F
Sbjct: 442 RELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYVNDSVHRF 501

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE-VFLDVGE-EDKERAVYQHSEKLAM 658
            +GD+SHP+TKE+YLKL+E+   ++  GY+PDIS  V    G+ E+KE+A+  HSEKLA+
Sbjct: 502 SSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGDLEEKEQALCCHSEKLAV 561

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
            FGL+ + P   + + KNLR+C DCH   K+VS VYDRE+I+RD+ RFH FK GSCSC D
Sbjct: 562 CFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSD 621

Query: 719 YW 720
           YW
Sbjct: 622 YW 623



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/490 (22%), Positives = 214/490 (43%), Gaps = 83/490 (16%)

Query: 29  MHQLKQIHSQTIKLGLLTNPT--VQNKLVTFCCSEKGDMKYACKVFRKIPRPSV--CLWN 84
           +H  +++H+     GL   P   + N L  F  S  G++  A K+F +IP        W 
Sbjct: 22  LHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASS-GEIATAQKLFDEIPLSDKDNVDWT 80

Query: 85  TMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF 144
           T++  +SR     N + ++++M +  V  D+ +   L     +   + FG++ H   +K 
Sbjct: 81  TLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKM 140

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           GF +SV V NAL+  Y  CG V   + IF    +  VV+W  +     + +     R++F
Sbjct: 141 GFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVF 200

Query: 205 GEMERKGVLPTS--------------------------------VTIVLVLSACAKLKDL 232
            EM  + V+  +                                VT+  +LSACA+  +L
Sbjct: 201 DEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNL 260

Query: 233 DVGKRAHRY-------VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
            +G+  H Y       + E +    +++  AL DMYA CG +  ++++F  ++ ++V++W
Sbjct: 261 VIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTW 320

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            A+ +G    G+    R   D  PE                        + RE     ++
Sbjct: 321 NALFSGLAMHGK---GRMVIDMFPE------------------------MVRE-----VK 348

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           PD+ T  ++L+AC++LG ++ G      +    ++  +     ++D+  + G +E+A+ +
Sbjct: 349 PDDLTFTALLSACSHLGMVDEGWRCFHSLQFYGLEPKVDHYACMVDILGRAGRIEEAEIL 408

Query: 406 FREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
            REM +  ++    +++   +++G  + +  +  ++++ S  P    Y  ++S       
Sbjct: 409 MREMPVPPNEVVLGSLLGSCSVHGKLEIAERIKRELIQMS--PGHTEYQILMS----NMY 462

Query: 465 VDEGREYFAD 474
           V EGR   AD
Sbjct: 463 VAEGRSDIAD 472


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/756 (33%), Positives = 402/756 (53%), Gaps = 69/756 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H Q +K GL+ + +V N LV    ++ G+++   +VF ++    V  WN+++ GYS 
Sbjct: 122 EQVHCQCVKCGLVHHLSVGNSLVDM-YTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSW 180

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              +     ++  M     RPD YT   ++       AV  G ++H  V+K GF++   V
Sbjct: 181 NRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLV 240

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            N+LIS     G +  AR +FD     D V+WN+M +G+    Q  E  + F  M+  G 
Sbjct: 241 CNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGA 300

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            PT  T   V+ +CA LK+L + +  H    +  +  N  +  AL      C E+  A  
Sbjct: 301 KPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFS 360

Query: 273 IFGNIKN-KDVISWTAIVTGYINRGQVDMARQYFDQMP---------------------- 309
           +F  +   + V+SWTA+++GY+  G  D A   F  M                       
Sbjct: 361 LFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVF 420

Query: 310 -------------ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN------------- 343
                        E+   + TA++D ++++    +A+ +F  ++T +             
Sbjct: 421 ISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQ 480

Query: 344 ------------------IRPDEFTIVSILTAC-ANLGALELGEWVKTYIDKNKVKNDIF 384
                             I+P+EFT  SI+ AC A   ++E G+    Y  K ++ N + 
Sbjct: 481 AGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALC 540

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           V ++L+ +Y K G++E A  +F+    +D  +W +MI G A +G   K+L++F +M + +
Sbjct: 541 VSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRN 600

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           +  D +T++GV+SAC H G+V +G+ YF  M   H I P   HY CM+DL  RAG L +A
Sbjct: 601 LEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKA 660

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
           +++I  MP  P + VW  +L A RVHR+ E+ ++AA++I+ L+P + A YVLL NIYAA 
Sbjct: 661 MDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAA 720

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
             W     +R+++  R +KK PG S IE+    + F+AGD SHP +  IY KL E+ + L
Sbjct: 721 GNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRL 780

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           + VGY PD + VF D+ +E KE  +  HSE+LA+AFGLI++ P + ++IVKNLR+C DCH
Sbjct: 781 RDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCH 840

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              KLVS+V  R ++VRD  RFHHFK G CSC DYW
Sbjct: 841 SFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/524 (25%), Positives = 240/524 (45%), Gaps = 45/524 (8%)

Query: 46  TNPTVQNKLVTFCCS---EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLI 102
            NP +Q+ +V           D ++A ++F + P   +   N ++  YSR D  +  + +
Sbjct: 30  ANPLLQSHVVALNARTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHL 89

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           ++ + +S + PD+YT   +L           G+++HC  +K G    + V N+L+  Y  
Sbjct: 90  FVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTK 149

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
            G V   R +FD     DVV+WN++ +GY   +  D+  +LF  M+ +G  P   T+  V
Sbjct: 150 TGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTV 209

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           ++A A    + +G + H  V +       ++ N+L  M +  G +  A  +F N++NKD 
Sbjct: 210 IAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDS 269

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +SW +++ G++  GQ D+                              EA   F  MQ +
Sbjct: 270 VSWNSMIAGHVINGQ-DL------------------------------EAFETFNNMQLA 298

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
             +P   T  S++ +CA+L  L L   +     K+ +  +  V  AL+    KC +++ A
Sbjct: 299 GAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDA 358

Query: 403 QRVFREMLR-KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
             +F  M   +   +WTAMI G   NG  D+++++FS M R  + P+  TY  +L+   H
Sbjct: 359 FSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-QH 417

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
              + E         I+   E + +    ++D   + G++++A++V + +  K + I W 
Sbjct: 418 AVFISE----IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETK-DVIAWS 472

Query: 522 ALL-GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
           A+L G  +     E A++  +   E    NE  +   C+I  AC
Sbjct: 473 AMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTF---CSIINAC 513



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 133/259 (51%), Gaps = 3/259 (1%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S I T +    + +IH++ IK     + +V   L+     + G++  A KVF  I    V
Sbjct: 410 STILTVQHAVFISEIHAEVIKTNYEKSSSVGTALLD-AFVKIGNISDAVKVFELIETKDV 468

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-VEFGKELHC 139
             W+ M+ GY++    +    I+  + +  ++P+ +TF  ++   T   A VE GK+ H 
Sbjct: 469 IAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHA 528

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           + +K   ++++ V ++L++ Y   G ++ A  IF    + D+V+WN+M SGY +  Q  +
Sbjct: 529 YAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKK 588

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR-YVKECKIVPNLILENALT 258
             ++F EM+++ +   ++T + V+SACA    +  G+      + +  I P +   + + 
Sbjct: 589 ALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMI 648

Query: 259 DMYAACGEMGFALEIFGNI 277
           D+Y+  G +G A++I   +
Sbjct: 649 DLYSRAGMLGKAMDIINGM 667


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/615 (39%), Positives = 366/615 (59%), Gaps = 34/615 (5%)

Query: 101 LIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF-DSSVFVQNALIS 158
           L  LD++ +  + PD   +  LLK  TR   VE G+ +H H++   F D+ + +QN +++
Sbjct: 72  LYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVN 131

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y  CG +D AR +FD     D+VTW A+ +G+ +  +  +   LF +M R G  P   T
Sbjct: 132 MYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFT 191

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           +  +L A      LD G + H +  +     ++ + +AL DMYA CG M           
Sbjct: 192 LSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHM----------- 240

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
                               D A+  FD MP +  V W A+I G+ R      AL L  +
Sbjct: 241 --------------------DAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWK 280

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           MQ  N +P  FT  S+L+ACA++GALE G+WV  ++ K+ +K   F+GN L+DMY K G 
Sbjct: 281 MQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGS 340

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           ++ A+RVF  +++ D  +W  M+ G A +G G ++LD F QMLR  I P+E++++ VL+A
Sbjct: 341 IDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTA 400

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C+H+G++DEG  YF ++  ++ +EP+  HY   VDLLGR G L+ A   I+ MP++P + 
Sbjct: 401 CSHSGLLDEGLYYF-ELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAA 459

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           VWGALLGACR+H++ E+   AA++  ELDP +    +LL NIYA+  RW +  ++R+M+ 
Sbjct: 460 VWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMK 519

Query: 579 DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL 638
           + G+KK P CS +E+   VH FVA D++HP+ KEI  K +E++  +K +GY+PD S V L
Sbjct: 520 ESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVLL 579

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
            V ++++E  +  HSEKLA+AF L+++  G  IRI KN+R+C DCH   K VS V DRE+
Sbjct: 580 FVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDREI 639

Query: 699 IVRDKTRFHHFKHGS 713
           IVRD  RFH F+ GS
Sbjct: 640 IVRDTNRFHRFRDGS 654



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 195/403 (48%), Gaps = 35/403 (8%)

Query: 23  IETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           ++ C  + +++Q   +H+  +    L N  V   ++    ++ G +  A ++F ++P   
Sbjct: 94  LKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKD 153

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           +  W  +I G+S+ +  ++ +L++  ML+   +P+++T   LLK    +  ++ G +LH 
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHA 213

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
             LK+G+ SSV+V +AL+  Y  CG +D A+  FD       V+WNA+ SG+ R  + + 
Sbjct: 214 FCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEH 273

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
              L  +M+RK   PT  T   VLSACA +  L+ GK  H ++ +  +     + N L D
Sbjct: 274 ALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLD 333

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA  G +  A  +F  +   DV+SW  ++TG    G                       
Sbjct: 334 MYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLG--------------------- 372

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
                     +E L  F +M    I P+E + + +LTAC++ G L+ G +    + K KV
Sbjct: 373 ----------KETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKV 422

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
           + D+      +D+  + G +++A+R  REM +      W A++
Sbjct: 423 EPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G G  +LD+     R S++PD   Y  +L  CT  G V++GR   A +   H ++ +   
Sbjct: 69  GTGLYALDLIQ---RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVL 125

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
              +V++  + G L++A  +   MP K + + W AL+     +     A +   Q+L L
Sbjct: 126 QNIIVNMYAKCGCLDDARRMFDEMPTK-DMVTWTALIAGFSQNNRPRDALLLFPQMLRL 183


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 252/723 (34%), Positives = 399/723 (55%), Gaps = 36/723 (4%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNP--TVQNKLVTFC 58
           M  +SS + P  +T  T L+         + + Q+H+  +KLG  TNP  TV N L+   
Sbjct: 136 MCRSSSCTLPDHVTF-TTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSY 194

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           C E   +  AC +F +IP      +NT+I GY +   +   + ++L M +S  +P ++TF
Sbjct: 195 C-EVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTF 253

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             +LK          G++LH   +  GF     V N ++  Y     V   R +FD   +
Sbjct: 254 SGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPE 313

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D V++N + S Y +  Q++ +   F EM+  G    +     +LS  A L  L +G++ 
Sbjct: 314 LDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL 373

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H           L + N+L DMYA C       E+F                        
Sbjct: 374 HCQALLATADSILHVGNSLVDMYAKC-------EMF------------------------ 402

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
           + A   F  +P+R  V WTA+I GY++       L LF +M+ SN+R D+ T  ++L A 
Sbjct: 403 EEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKAS 462

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A+  +L LG+ +  +I ++    ++F G+ L+DMY KCG ++ A +VF EM  ++  +W 
Sbjct: 463 ASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWN 522

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           A+I   A NG G+ ++  F++M+ + + PD V+ +GVL+AC+H G V++G EYF  M+  
Sbjct: 523 ALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPI 582

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           +GI P + HY CM+DLLGR G   EA +++  MP +P+ I+W ++L ACR+H++  +AE 
Sbjct: 583 YGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAER 642

Query: 539 AAKQILELDP-DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
           AA+++  ++   + A YV + NIYAA   W+  R++++ + +RGIKK P  S +E+N  +
Sbjct: 643 AAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKI 702

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLA 657
           H F + D++HP   EI  K++E+T++++  GY PD S V  DV E+ K  ++  HSE+LA
Sbjct: 703 HVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLA 762

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           +AF LIS+  G  I ++KNLR C DCH   KL+S +  RE+ VRD +RFHHF  G CSC 
Sbjct: 763 VAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCG 822

Query: 718 DYW 720
           DYW
Sbjct: 823 DYW 825



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/509 (26%), Positives = 238/509 (46%), Gaps = 43/509 (8%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPF 120
           GD+  A  +F  +P  +V  W  ++  Y+R         ++  M +S     PD+ TF  
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVF--VQNALISTYCLCGEVDMARGIFDVSYK 178
           LL G    +      ++H   +K GFD++ F  V N L+ +YC    +D+A  +F+   +
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D VT+N + +GY++   + E+  LF +M + G  P+  T   VL A   L D  +G++ 
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H                      A     GF+         +D      I+  Y    +V
Sbjct: 273 H----------------------ALSVTTGFS---------RDASVGNQILDFYSKHDRV 301

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
              R  FD+MPE D+V +  +I  Y + +++  +L  FREMQ        F   ++L+  
Sbjct: 302 LETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIA 361

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           ANL +L++G  +          + + VGN+L+DMY KC   E+A+ +F+ + ++   +WT
Sbjct: 362 ANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWT 421

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           A+I G    G     L +F++M  +++  D+ T+  VL A      +  G++  A   I+
Sbjct: 422 ALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHA-FIIR 480

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
            G   N      +VD+  + G + +A++V + MP + N++ W AL+ A   + D E A  
Sbjct: 481 SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDR-NAVSWNALISAHADNGDGEAAIG 539

Query: 539 AAKQILE--LDPDNEAVYVLLCNIYAACN 565
           A  +++E  L PD+    V +  +  AC+
Sbjct: 540 AFAKMIESGLQPDS----VSILGVLTACS 564



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 172/408 (42%), Gaps = 30/408 (7%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           + +   ++K GFD+     N ++      G+V  AR ++D     + V+ N M SG+ + 
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR------------YV 242
                 R LF  M  + V    VT  +++   A+    D   +  R            +V
Sbjct: 93  GDVSSARDLFDAMPDRTV----VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHV 148

Query: 243 KECKIVP---NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
               ++P   + + +NA+  ++A   ++GF    F  + N        ++  Y    ++D
Sbjct: 149 TFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSN-------VLLKSYCEVRRLD 201

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
           +A   F+++PE+D V +  +I GY +   + E++ LF +M+ S  +P +FT   +L A  
Sbjct: 202 LACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVV 261

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
            L    LG+ +           D  VGN ++D Y K   V + + +F EM   D  ++  
Sbjct: 262 GLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNV 321

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           +I   +     + SL  F +M           +  +LS   +   +  GR+      +  
Sbjct: 322 VISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALL-- 379

Query: 480 GIEPNEAHYG-CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
               +  H G  +VD+  +     EA  + K++P +  ++ W AL+  
Sbjct: 380 ATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQR-TTVSWTALISG 426


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/688 (36%), Positives = 381/688 (55%), Gaps = 33/688 (4%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           + K++H   +KLG  +N  V N L+     + G ++ A  +F ++  P V  WN+MI G 
Sbjct: 213 ECKRVHGYVLKLGFGSNTAVVNSLIA-AYFKFGGVESAHNLFDELSEPDVVSWNSMINGC 271

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
                  NG+ I++ ML   V  D  T   +L        +  G+ LH   +K  F   V
Sbjct: 272 VVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEV 331

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
              N L+  Y  CG ++ A  +F       +V+W ++ + Y R   + +   LF EM+ K
Sbjct: 332 VFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSK 391

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           GV P   T+  ++ ACA    LD G+  H YV +  +  NL + NAL +MYA CG     
Sbjct: 392 GVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG----- 446

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
                                      V+ AR  F ++P +D V W  MI GY +     
Sbjct: 447 --------------------------SVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPN 480

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           EAL LF +MQ    +PD+ T+  +L ACA L AL+ G  +  +I +    +D+ V  AL+
Sbjct: 481 EALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALV 539

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMY KCG +  AQ +F  + +KD  +WT MI G  ++G G++++  F++M  A I PDE 
Sbjct: 540 DMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDES 599

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           ++  +L+AC+H+G+++EG ++F  M  + G+EP   HY C+VDLL R G+L++A + I++
Sbjct: 600 SFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIES 659

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MP+KP++ +WG LL  CR+H D ++AE  A+ I EL+PDN   YV+L N+YA   +W+  
Sbjct: 660 MPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEV 719

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
           ++LR+ +  RG K+ PGCS IE+ G  + FVAG+  HPQ K+I + L ++T  ++   Y 
Sbjct: 720 KKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYS 779

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
                V ++  + +KE     HSEK AMAFG+++  PG T+R+ KN R+C DCH M K +
Sbjct: 780 SMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFM 839

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           S     E+++RD  RFHHFK G CSC+D
Sbjct: 840 SKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 135/306 (44%), Gaps = 35/306 (11%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           VL  CA+ K L+ GKR H  +    I  +  L   L  MY  CG++    +IF  I N  
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 159

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V  W  +++ Y                                ++  FRE+++LF++MQ 
Sbjct: 160 VFLWNLLMSEYA-------------------------------KIGNFRESVSLFKKMQK 188

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             +  + +T   +L   A LG ++  + V  Y+ K    ++  V N+LI  Y K G VE 
Sbjct: 189 LGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVES 248

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A  +F E+   D  +W +MI G  +NG     L++F QML   +  D  T V VL AC +
Sbjct: 249 AHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACAN 308

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV-W 520
            G +  GR       ++            ++D+  + G+LN A EV   + M   +IV W
Sbjct: 309 IGNLSLGRALHG-FGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVF--VKMGDTTIVSW 365

Query: 521 GALLGA 526
            +++ A
Sbjct: 366 TSIIAA 371



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 99/214 (46%), Gaps = 4/214 (1%)

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
            A I+ +  +   R A+ L  + ++  +  + +   S+L  CA   +LE G+ V + I  
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLNSY--CSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           N +  D  +G  L+ MY  CGD+ + +++F +++    F W  ++   A  G+  +S+ +
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F +M +  ++ +  T+  VL      G V E +       ++ G   N A    ++    
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG-YVLKLGFGSNTAVVNSLIAAYF 241

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           + G +  A  +   +  +P+ + W +++  C V+
Sbjct: 242 KFGGVESAHNLFDELS-EPDVVSWNSMINGCVVN 274


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/684 (37%), Positives = 368/684 (53%), Gaps = 64/684 (9%)

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK--SDVRPDNYTFPFLLKGFTR 127
            +F  + +     +N +I G+S   +H   V +Y  +L+  S VRP   T   ++   + 
Sbjct: 93  SLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASA 152

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
                 G++ HC +L+ GF  + FV + L+  Y   G +  A+ +FD     +VV +N M
Sbjct: 153 LGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTM 212

Query: 188 FSGYKRVKQFDETRKLFG-------------------------------EMERKGVLPTS 216
            +G  R K  +E R+LF                                 M  +G+    
Sbjct: 213 ITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQ 272

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T   +L+AC  L  L+ GK+ H Y+       N+ + +AL DMY+ C  +  A   F  
Sbjct: 273 YTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRR 332

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           +  K++IS                               WTA+I GY +     EA+ +F
Sbjct: 333 MSCKNIIS-------------------------------WTALIVGYGQNGCSEEAVRVF 361

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            EMQ   I PD+FT+ S++++CANL +LE G         + + + I V NAL+ +Y KC
Sbjct: 362 SEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKC 421

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G +E A R+F EML  D+ +WTA++ G A  G   +++D+F +ML   + PD VT++GVL
Sbjct: 422 GSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVL 481

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+  G V++G  YF  M   HGI P + HY CM+DL  R+G L EA E IK MPM P+
Sbjct: 482 SACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPD 541

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           +I WG LL ACR+  D E+ + AA+ +LE+DP N A YVLLC+++A    W+   +LR+ 
Sbjct: 542 AIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRG 601

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + DR +KK PGCS I+    VH F A D+SHP +K IY KL+ + S +   GY PD+S V
Sbjct: 602 MRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSV 661

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             DV + DK   V  HSEKLA+AFGL+     + IRIVKNLR+CVDCH   KL+S +  R
Sbjct: 662 LHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGR 721

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           +++VRD  RFH F +G CSC D+W
Sbjct: 722 DILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 147/556 (26%), Positives = 253/556 (45%), Gaps = 57/556 (10%)

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMAR 170
           RP +  +  LL    R      G  LHC +L+         + N L++ Y   G    AR
Sbjct: 3   RPLSSQYAALLSAAARTEPHAAGA-LHCVILRTLPHPPPTHLLNHLLTAYGKAGRHARAR 61

Query: 171 GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK-------------------- 210
            +FD +   ++ T+NA+ S     +  D+   LF  M ++                    
Sbjct: 62  RVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHAR 121

Query: 211 -------------GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
                         V P+ +T+  ++ A + L D  +G++ H  +       N  + + L
Sbjct: 122 AVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPL 181

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
             MYA  G +G A  +F  +  K+V+ +  ++TG +    V+ AR+ F+ M +RD + WT
Sbjct: 182 VGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWT 241

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
            M+ G+ +     +AL  FR M+   I  D++T  SILTAC  L ALE G+ +  YI + 
Sbjct: 242 TMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT 301

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
              +++FVG+AL+DMY KC  ++ A+  FR M  K+  +WTA+IVG   NG  ++++ +F
Sbjct: 302 HYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVF 361

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           S+M R  I PD+ T   V+S+C +   ++EG ++   + +  G+         +V L G+
Sbjct: 362 SEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHC-LALVSGLMHYITVSNALVTLYGK 420

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAAKQIL-ELDPDNEAVYV 555
            G + +A  +   M +  + + W AL+ G  +  R  E  ++  K +  ++ PD     V
Sbjct: 421 CGSIEDAHRLFDEM-LFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDG----V 475

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
               + +AC+R   F E              GCS        H  V  D  +    ++Y 
Sbjct: 476 TFIGVLSACSR-AGFVE-------------KGCSYFHSMQKDHGIVPIDDHYTCMIDLYS 521

Query: 616 KLDEMTSDLKFVGYMP 631
           +   +    +F+  MP
Sbjct: 522 RSGRLKEAEEFIKQMP 537



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 187/430 (43%), Gaps = 67/430 (15%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q H Q ++LG   N  V + LV    ++ G +  A +VF ++   +V ++NTMI G  R
Sbjct: 160 RQFHCQILRLGFGVNAFVGSPLVGMY-AKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLR 218

Query: 93  IDSHKNGVLIYLDMLKSD-------------------------------VRPDNYTFPFL 121
               +    ++  M   D                               +  D YTF  +
Sbjct: 219 CKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSI 278

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L       A+E GK++H ++++  +D +VFV +AL+  Y  C  +  A   F      ++
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNI 338

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           ++W A+  GY +    +E  ++F EM+R G+ P   T+  V+S+CA L  L+ G + H  
Sbjct: 339 ISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCL 398

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
                ++  + + NAL  +Y  CG +  A  +F  +   D +SWTA+VTGY   G     
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFG----- 453

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                     R +E + LF +M   +++PD  T + +L+AC+  
Sbjct: 454 --------------------------RAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRA 487

Query: 362 GALELG--EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWT 418
           G +E G   +     D   V  D      +ID+Y + G +++A+   ++M +  D   W 
Sbjct: 488 GFVEKGCSYFHSMQKDHGIVPIDDHY-TCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWG 546

Query: 419 AMIVGLAING 428
            ++    + G
Sbjct: 547 TLLSACRLRG 556



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 146/309 (47%), Gaps = 9/309 (2%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           +++      ++ Q KQIH+  I+     N  V + LV    S+   +K A   FR++   
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMY-SKCRSIKPAETAFRRMSCK 336

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           ++  W  +I GY +    +  V ++ +M +  + PD++T   ++       ++E G + H
Sbjct: 337 NIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFH 396

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
           C  L  G    + V NAL++ Y  CG ++ A  +FD     D V+W A+ +GY +  +  
Sbjct: 397 CLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAK 456

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENAL 257
           ET  LF +M  K V P  VT + VLSAC++   ++ G    H   K+  IVP       +
Sbjct: 457 ETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCM 516

Query: 258 TDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD---- 312
            D+Y+  G +  A E    +  + D I W  +++    RG +++ +   + + E D    
Sbjct: 517 IDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNP 576

Query: 313 --YVLWTAM 319
             YVL  +M
Sbjct: 577 ASYVLLCSM 585


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/722 (35%), Positives = 402/722 (55%), Gaps = 42/722 (5%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFC 58
           F N  + P S       + S +  C  +  +++   IH    K+G+  +  V N L++  
Sbjct: 207 FRNLGVVPDSY-----TMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMY 261

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           C   G +    ++F K+       WNTMI GYS++  ++  + ++++M+ +  +PD  T 
Sbjct: 262 CKFNGLID-GRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTI 319

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             +L+       +EFGK +H +++  G++      N LI+ Y  CG +  ++ +F     
Sbjct: 320 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 379

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D V+WN+M + Y +   FDE  KLF +M +  V P SVT V++LS   +L DL +GK  
Sbjct: 380 KDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKEL 438

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H  + +     N+++ N L DMYA CGEMG +L++F                        
Sbjct: 439 HCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVF------------------------ 474

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                  + M  RD + W  +I   +        L +   M+T  + PD  T++SIL  C
Sbjct: 475 -------ENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVC 527

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           + L A   G+ +   I K  +++D+ VGN LI+MY KCG +  + +VF+ M  KD  TWT
Sbjct: 528 SLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWT 587

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           A+I    + G G K++  F +M  A I+PD V +V ++ AC+H+G+V+EG  YF  M   
Sbjct: 588 ALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKD 647

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           + IEP   HY C+VDLL R+  L++A + I +MP+KP+S +WGALL ACR+  D E+AE 
Sbjct: 648 YKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAER 707

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
            +++I+EL+PD+   YVL+ NIYAA  +WD  R +R+ I  RG+KK PGCS +E+   V+
Sbjct: 708 VSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVY 767

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
            F  G K   Q +E+   L  +   +   GY+ ++  V  D+ E++K   +  HSE+LA+
Sbjct: 768 VFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAI 827

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           AFGL+++ PG  ++++KNLR+C DCH + K +S +  RE++VRD  RFH FK G+CSC D
Sbjct: 828 AFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGD 887

Query: 719 YW 720
           YW
Sbjct: 888 YW 889



 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 160/547 (29%), Positives = 265/547 (48%), Gaps = 41/547 (7%)

Query: 22  PIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR-KIPRPSV 80
            + +  +  QL ++HS  I LGL  +     KL+      + D   +  VFR   P  +V
Sbjct: 22  ALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFR-DPTSSFSVFRLASPSNNV 80

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            LWN++I+  +        + +Y +  +  ++PD YTFP ++      +  E  K +H  
Sbjct: 81  YLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDR 140

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           VL  GF S +++ NALI  YC   ++D AR +F+     DVV+WN++ SGY     ++E 
Sbjct: 141 VLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 200

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
            +++      GV+P S T+  VL AC  L  ++ G   H  +++  I  ++I+ N L  M
Sbjct: 201 LEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM 260

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           Y     +     IF  +  +D +SW                                 MI
Sbjct: 261 YCKFNGLIDGRRIFDKMVLRDAVSW-------------------------------NTMI 289

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            GY +V  + E++ LF EM  +  +PD  TI SIL AC +LG LE G++V  Y+  +  +
Sbjct: 290 CGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYE 348

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D    N LI+MY KCG++  +Q VF  M  KD  +W +MI     NG  D+++ +F +M
Sbjct: 349 CDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KM 407

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           ++  + PD VTYV +LS  T  G +  G+E   D+  + G   N      +VD+  + G 
Sbjct: 408 MKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLA-KMGFNSNIVVSNTLVDMYAKCGE 466

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILE-LDPDNEAVYVLL- 557
           + ++L+V +NM  + + I W  ++ +C    D  +   M ++   E + PD   +  +L 
Sbjct: 467 MGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILP 525

Query: 558 -CNIYAA 563
            C++ AA
Sbjct: 526 VCSLLAA 532


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/655 (38%), Positives = 379/655 (57%), Gaps = 17/655 (2%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYS-RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           A  +FR++P   +  +N +I G S R  +  +       +      P   +F  LL+G+ 
Sbjct: 67  ALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASI---PFPPSVVSFTSLLRGYV 123

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           R   +     L   + +    S   +   L+      G V+ AR +FD     DVV W A
Sbjct: 124 RHGLLADAIRLFQQMPERNHVSYTVLLGGLLDA----GRVNEARRLFDEMPDRDVVAWTA 179

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M SGY +  +  E R LF EM ++ V    V+   ++S  A+  ++++ ++    + E  
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPE-- 233

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              N +   A+   Y   G +  A E+F  +    V +  A++ G+  RG VD A+  F+
Sbjct: 234 --RNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFE 291

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
           +M ERD   W+AMI  Y +     EAL+ FREM    +RP+  +++SILT CA L  L+ 
Sbjct: 292 KMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDY 351

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G  V   + +     D+F  +ALI MY KCG+++KA+RVF     KD   W +MI G A 
Sbjct: 352 GREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ 411

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G+++L +F  M  A + PD +TY+G L+AC++TG V EGRE F  MT+   I P   
Sbjct: 412 HGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAE 471

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY CMVDLLGR+G + EA ++IKNMP++P++++WGAL+GACR+HR+AE+AE+AAK++LEL
Sbjct: 472 HYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLEL 531

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK- 605
           +P N   YVLL +IY +  RW++  ++R+ I  R + K+PGCS IE +  VH F +GD  
Sbjct: 532 EPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVL 591

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           +HP+   I   L+++   L   GY  D S V  D+ EE K  ++  HSE+ A+A+GL+  
Sbjct: 592 AHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKI 651

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             G+ IR++KNLR+C DCH   KL++ +  RE+++RD  RFHHFK G CSC+DYW
Sbjct: 652 PEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 182/411 (44%), Gaps = 41/411 (9%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           NA I+     G ++ AR  F+        ++NA+ +GY R +  D    LF  M  + + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
             +  I  +      L D      A   +      P+++   +L   Y   G +  A+ +
Sbjct: 81  SYNALISGLSLRRQTLPD------AAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRL 134

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  ++ +S+T ++ G ++ G+V+ AR+ FD+MP+RD V WTAM+ GY +  R  EA 
Sbjct: 135 FQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELG-------------EWVKT---YIDKN 377
            LF EM   N+     +  ++++  A  G + L               W      YI   
Sbjct: 195 ALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAG 250

Query: 378 KVKN-----------DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
            V++            +   NA++  + + G V+ A+ VF +M  +D  TW+AMI     
Sbjct: 251 HVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQ 310

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           N    ++L  F +ML   + P+  + + +L+ C    ++D GRE  A M ++   + +  
Sbjct: 311 NEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM-LRCSFDMDVF 369

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV-WGALLGACRVHRDAEMA 536
               ++ +  + G+L++A  V      +P  IV W +++     H   E A
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQHGLGEQA 418



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 167/374 (44%), Gaps = 51/374 (13%)

Query: 54  LVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNG-VLIYLDMLKSDVR 112
           L  +C  + G +  A  +F ++P+ +V  W  MI GY+     +NG V +   + +    
Sbjct: 181 LSGYC--QAGRITEARALFDEMPKRNVVSWTAMISGYA-----QNGEVNLARKLFEVMPE 233

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
            +  ++  +L G+ +   VE   EL   +     +  V   NA++  +   G VD A+ +
Sbjct: 234 RNEVSWTAMLVGYIQAGHVEDAAELFNAMP----EHPVAACNAMMVGFGQRGMVDAAKTV 289

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           F+   + D  TW+AM   Y++ +   E    F EM  +GV P   +++ +L+ CA L  L
Sbjct: 290 FEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVL 349

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
           D G+  H  +  C    ++   +AL  MY  CG +  A  +F   + KD++ W +++TGY
Sbjct: 350 DYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY 409

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G  +                               +AL +F +M+ + + PD  T +
Sbjct: 410 AQHGLGE-------------------------------QALGIFHDMRLAGMSPDGITYI 438

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFRE 408
             LTAC+  G ++ G   +   +   V + I  G    + ++D+  + G VE+A  + + 
Sbjct: 439 GALTACSYTGKVKEG---REIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKN 495

Query: 409 M-LRKDKFTWTAMI 421
           M +  D   W A++
Sbjct: 496 MPVEPDAVIWGALM 509



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 133/295 (45%), Gaps = 17/295 (5%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           ++G +  A  VF K+       W+ MIK Y + +     +  + +ML   VRP+  +   
Sbjct: 279 QRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVIS 338

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +L        +++G+E+H  +L+  FD  VF  +ALI+ Y  CG +D A+ +F      D
Sbjct: 339 ILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKD 398

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           +V WN+M +GY +    ++   +F +M   G+ P  +T +  L+AC+    +  G+    
Sbjct: 399 IVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFN 458

Query: 241 YVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN----KDVISWTAIVTGYINR 295
            +     I P     + + D+    G  G   E F  IKN     D + W A++      
Sbjct: 459 SMTVNSSIRPGAEHYSCMVDL---LGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMH 515

Query: 296 GQVDMARQYFDQMPERD------YVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
              ++A     ++ E +      YVL + +   Y  V R+ +A  + + + + N+
Sbjct: 516 RNAEIAEVAAKKLLELEPGNAGPYVLLSHI---YTSVGRWEDASKMRKFISSRNL 567



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           +IS +  C ++  L   +++H+  ++     +    + L+T    + G++  A +VF   
Sbjct: 336 VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYI-KCGNLDKAKRVFHTF 394

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
               + +WN+MI GY++    +  + I+ DM  + + PD  T+   L   +    V+ G+
Sbjct: 395 EPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGR 454

Query: 136 EL 137
           E+
Sbjct: 455 EI 456


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 252/655 (38%), Positives = 378/655 (57%), Gaps = 17/655 (2%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYS-RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           A  +FR++P   +  +N +I G S R  +  +       +      P   +F  LL+G+ 
Sbjct: 67  ALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASI---PFPPSVVSFTSLLRGYV 123

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           R   +     L   + +    S   +   L+      G V+ AR +FD     DVV W A
Sbjct: 124 RHGLLADAIRLFQQMPERNHVSYTVLLGGLLDA----GRVNEARRLFDEMPDRDVVAWTA 179

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M SGY +  +  E R LF EM ++ V    V+   ++S  A+  ++++ ++    + E  
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPE-- 233

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              N +   A+   Y   G +  A E+F  +    V +  A++ G+  RG VD A+  F+
Sbjct: 234 --RNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFE 291

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
           +M ERD   W+AMI  Y +     EAL+ FREM    +RP+  +++SILT CA L  L+ 
Sbjct: 292 KMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDY 351

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G  V   + +     D+F  +ALI MY KCG+++KA+RVF     KD   W +MI G A 
Sbjct: 352 GREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ 411

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G+++L +F  M  A + PD +TY+G L+AC++TG V EGRE F  MT+   I P   
Sbjct: 412 HGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAE 471

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY CMVDLLGR+G + EA ++IKNMP++P++++WGAL+GACR+HR+AE+AE AAK++LEL
Sbjct: 472 HYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLEL 531

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK- 605
           +P N   YVLL +IY +  RW++  ++R+ I  R + K+PGCS IE +  VH F +GD  
Sbjct: 532 EPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVL 591

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           +HP+   I   L+++   L   GY  D S V  D+ EE K  ++  HSE+ A+A+GL+  
Sbjct: 592 AHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKI 651

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             G+ IR++KNLR+C DCH   KL++ +  RE+I+RD  RFHHFK G CSC+DYW
Sbjct: 652 PEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 182/411 (44%), Gaps = 41/411 (9%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           NA I+     G ++ AR  F+        ++NA+ +GY R +  D    LF  M  + + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
             +  I  +      L D      A   +      P+++   +L   Y   G +  A+ +
Sbjct: 81  SYNALISGLSLRRQTLPD------AAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRL 134

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  ++ +S+T ++ G ++ G+V+ AR+ FD+MP+RD V WTAM+ GY +  R  EA 
Sbjct: 135 FQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELG-------------EWVKT---YIDKN 377
            LF EM   N+     +  ++++  A  G + L               W      YI   
Sbjct: 195 ALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAG 250

Query: 378 KVKN-----------DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
            V++            +   NA++  + + G V+ A+ VF +M  +D  TW+AMI     
Sbjct: 251 HVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQ 310

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           N    ++L  F +ML   + P+  + + +L+ C    ++D GRE  A M ++   + +  
Sbjct: 311 NEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM-LRCSFDMDVF 369

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV-WGALLGACRVHRDAEMA 536
               ++ +  + G+L++A  V      +P  IV W +++     H   E A
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQHGLGEQA 418



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 167/374 (44%), Gaps = 51/374 (13%)

Query: 54  LVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNG-VLIYLDMLKSDVR 112
           L  +C  + G +  A  +F ++P+ +V  W  MI GY+     +NG V +   + +    
Sbjct: 181 LSGYC--QAGRITEARALFDEMPKRNVVSWTAMISGYA-----QNGEVNLARKLFEVMPE 233

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
            +  ++  +L G+ +   VE   EL   +     +  V   NA++  +   G VD A+ +
Sbjct: 234 RNEVSWTAMLVGYIQAGHVEDAAELFNAMP----EHPVAACNAMMVGFGQRGMVDAAKTV 289

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           F+   + D  TW+AM   Y++ +   E    F EM  +GV P   +++ +L+ CA L  L
Sbjct: 290 FEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVL 349

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
           D G+  H  +  C    ++   +AL  MY  CG +  A  +F   + KD++ W +++TGY
Sbjct: 350 DYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY 409

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G  +                               +AL +F +M+ + + PD  T +
Sbjct: 410 AQHGLGE-------------------------------QALGIFHDMRLAGMSPDGITYI 438

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFRE 408
             LTAC+  G ++ G   +   +   V + I  G    + ++D+  + G VE+A  + + 
Sbjct: 439 GALTACSYTGKVKEG---REIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKN 495

Query: 409 M-LRKDKFTWTAMI 421
           M +  D   W A++
Sbjct: 496 MPVEPDAVIWGALM 509



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           +IS +  C ++  L   +++H+  ++     +    + L+T    + G++  A +VF   
Sbjct: 336 VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYI-KCGNLDKAKRVFHTF 394

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
               + +WN+MI GY++    +  + I+ DM  + + PD  T+   L   +    V+ G+
Sbjct: 395 EPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGR 454

Query: 136 EL 137
           E+
Sbjct: 455 EI 456


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/709 (35%), Positives = 395/709 (55%), Gaps = 75/709 (10%)

Query: 23  IETCESMHQLKQIHSQTIKLG-LLTNPTVQNKLVTFCCSEKGDMKYACKVF--------R 73
           ++ C S+  LK IHS     G LL  P    +L+    S+ GD+  A  +F         
Sbjct: 32  LQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILY-SKLGDLHSARTLFDHRHHHHHG 90

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
               P+  L NTM++ Y+        + +Y+ M +  V  +N+T+PF+LK    ++   F
Sbjct: 91  HTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVF 150

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+ +H  V++ GF S +FV+ AL+  Y  CGE+  A  +FD     DVV W AM + Y++
Sbjct: 151 GEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQ 210

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
            ++  +   LF +M+ +G L   +T + V SA  +L D   G+ A   +   ++V     
Sbjct: 211 AERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGD---GRMA---ISRARLV----- 259

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
                               F  ++ ++ ISW ++++GY   G                 
Sbjct: 260 --------------------FDRMEERNGISWNSMLSGYTQNG----------------- 282

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
                         R  +AL+LF +MQ S   P+  T + +++AC+ LG+  LG  +  +
Sbjct: 283 --------------RPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNF 328

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR--EMLRKDKFTWTAMIVGLAINGHGD 431
           +  +K+  D  + NA++DMY KCGD++ A  +F   E+  +D  +W  +I G  ++GHG 
Sbjct: 329 VISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK 388

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L++FS+M    + P+++T+  +LSAC+H G++DEGR+ FADMT +  + P   HY CM
Sbjct: 389 EALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYACM 447

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VD+LGRAG LNEA  +IK +P +P+  VWGALL ACR+H + E+ E+AA  + +L+P++ 
Sbjct: 448 VDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHT 507

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVL+ NIYAA N+W     +RQ +  RG+KK    S+IE    VH F   D+S P  +
Sbjct: 508 GYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYR 567

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           E+Y K++ +  ++K VGY+PD+S V  DV  EDKE  +  HSEKLA+AFG++    G+ I
Sbjct: 568 EVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPI 627

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++ KNLR+C DCH   K +S +Y R++IVRD  RFHHF+ G CSC DYW
Sbjct: 628 QVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/519 (43%), Positives = 323/519 (62%), Gaps = 30/519 (5%)

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLK-DLDVGKRAHRYVKECKIVPNLILENALTDMY 261
            F  M R  V+P   T   +L ACA L    DVG +AH    +     +  + N L  MY
Sbjct: 113 FFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY 172

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           +           FG                    G +  AR  FD+MP+   V W+AMI 
Sbjct: 173 SC----------FGG-------------------GFLGDARNVFDRMPKESAVTWSAMIG 203

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           GY+R     +A+ LFREMQ + ++ DE T++ +L A  +LGALEL  WV+ ++++  +  
Sbjct: 204 GYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGK 263

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
            + + NALID   KCGDV+ A  VF  M ++   +WT++I  LA+ G G +++ +F +M 
Sbjct: 264 SVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMK 323

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
            A + PD+V ++GVL+AC+H GMVDEG  YF  M +++GIEP   HYGCMVD+ GRAG +
Sbjct: 324 VAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMV 383

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
             A+E ++ MP++PN ++W +L+ ACR H   E+ E   + +L   P +EA Y++L N++
Sbjct: 384 ERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVF 443

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMT 621
           A   RW    E+R+ +  RGIKK PGCS++E++G VHEF+AGD+SHPQ K+IY  ++EM 
Sbjct: 444 ALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMA 503

Query: 622 SDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCV 681
            +L+ VG++   SEV LD+ EEDKE A+  HSEKLA+AF L+ + PG  +R+VKNLR+C 
Sbjct: 504 RELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCS 563

Query: 682 DCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           DCH   K +S VY RE++VRD++RFH FK GSCSCKD+W
Sbjct: 564 DCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 148/321 (46%), Gaps = 12/321 (3%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           Q H+  +K G  T+  V N L+  + C   G +  A  VF ++P+ S   W+ MI GY R
Sbjct: 148 QAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVR 207

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                + V ++ +M  + V+ D  T   +L   T   A+E  + +   V + G   SV +
Sbjct: 208 GGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTL 267

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NALI T   CG+VD A  +F+   +  VV+W ++        +  E  ++F EM+  GV
Sbjct: 268 CNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGV 327

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFAL 271
            P  V  + VL+AC+    +D G      +K E  I P +     + DM+   G +  A+
Sbjct: 328 PPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAM 387

Query: 272 EIFGNIK-NKDVISWTAIVTGYINRGQVDMA----RQYFDQMP--ERDYVLWTAMIDGYL 324
           E    +    + + W ++V+     G++++     R    + P  E +Y++ + +   + 
Sbjct: 388 EFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNV---FA 444

Query: 325 RVNRFREALTLFREMQTSNIR 345
              R++E   + REM    I+
Sbjct: 445 LTQRWKEKSEIRREMSKRGIK 465



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 6/202 (2%)

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANL-GALELGEWVKTYIDKNKVKNDIFVG 386
           R R A   F  M    + P++FT   +L ACA L G+ ++G        K     D +V 
Sbjct: 107 RLRAA-AFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVS 165

Query: 387 NALIDMYCKCGD--VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           N LI MY   G   +  A+ VF  M ++   TW+AMI G    G    ++++F +M    
Sbjct: 166 NTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANG 225

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           +  DEVT +GVL+A T  G ++  R +      + GI  +      ++D L + G ++ A
Sbjct: 226 VQADEVTVIGVLAAATDLGALELAR-WVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGA 284

Query: 505 LEVIKNMPMKPNSIVWGALLGA 526
           + V + M  + + + W +++ A
Sbjct: 285 VAVFEGMQQR-SVVSWTSVIDA 305


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/576 (39%), Positives = 362/576 (62%), Gaps = 22/576 (3%)

Query: 43  GLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101
           GL+ +P   ++L+ FC  SE   + Y  K+ + I  P+   WN  I+G+S  ++ K+ VL
Sbjct: 5   GLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPKDAVL 64

Query: 102 IYLDMLKS---DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
            Y  ML+    + RPD++T+P L K          G  +  HV K   +    V NA I 
Sbjct: 65  AYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIH 124

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            +  CGE++ AR +FD S   D+V+WN + +GYK++ + ++  +++  ME +GV P  VT
Sbjct: 125 MFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVT 184

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           ++ ++S+CA L DL+ GK  + YVK   +   + L NAL DM++ CG++  A  IF N++
Sbjct: 185 MIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLE 244

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
            + ++S                  + FD M E+D V+W AMI G ++  R ++AL LF+E
Sbjct: 245 KRTIVS------------------KLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQE 286

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           MQTSN  PDE T++  L+AC+ LGAL++G W+  YI+K+ +  ++ +G +L+DMY KCG+
Sbjct: 287 MQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGN 346

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           + +A  VF  +  ++  T+TA+I GLA++G    ++  F++M+ A I PDE+T++G+LSA
Sbjct: 347 ISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSA 406

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C H GM+  GR+YF+ M  +  + P   HY  MVDLLGRAG L EA +++++MPM+ ++ 
Sbjct: 407 CCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAA 466

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           VWGALL  CR+H + ++ E AAK++LELDP +  +YVLL  +Y   N W++ +  R+M+ 
Sbjct: 467 VWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMN 526

Query: 579 DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           +RG++K PGCS IE+NG+V EF+  DKS P++++IY
Sbjct: 527 ERGVEKIPGCSSIEVNGIVSEFIVRDKSRPESEKIY 562


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/603 (37%), Positives = 367/603 (60%), Gaps = 2/603 (0%)

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           + L+   R  +   GK+LHCH++K G D    + N LI+ Y  CG +  A  +F+     
Sbjct: 8   YQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHR 67

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           D ++W ++ +   +      T  +F  M ++ G+ P       ++ ACA L  +  GK+ 
Sbjct: 68  DPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQV 127

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H       +  + +++++L DMYA CG       +F +I +K+ ISWTA+++GY   G+ 
Sbjct: 128 HATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRK 187

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-PDEFTIVSILTA 357
             A Q F +MP ++ + WTA+I G ++   + ++  LF EM++  I   D F + SI+ A
Sbjct: 188 LDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGA 247

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
            ANL  L LG+ +   +     ++ +FV NAL+DMY KC DV  A+++F  M+++D  +W
Sbjct: 248 SANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSW 307

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           T++IVG A +G  +++L ++++ML   + P+EVT+VG++ AC+H G+V +GR +F  M  
Sbjct: 308 TSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIK 367

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
            +GI P+  HY C++DLL R+GHL EA  +IK MP KP+   W ALL AC  HR+  +  
Sbjct: 368 DYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGI 427

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
             A  +L L P++ + Y+LL NIYA+   W++  ++R+++    +KK PG S I +    
Sbjct: 428 RVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKES 487

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLA 657
             F+AG+ SHP  +EI+  L+E+ +++K  GY+PD S V  D+ +++KER ++ HSE+LA
Sbjct: 488 QVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLA 547

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           +A+GL+   PG+ + IVKNLR+C DCH + K +S++  RE++VRD  R+HHFK G CSC 
Sbjct: 548 VAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCN 607

Query: 718 DYW 720
           ++W
Sbjct: 608 NFW 610



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/499 (23%), Positives = 219/499 (43%), Gaps = 78/499 (15%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K++H   IK G+    ++ N L+     + G ++ A  +F ++P      W +++   ++
Sbjct: 23  KKLHCHIIKTGIDQCKSLSNNLINMY-GKCGLIQDALNLFNQLPHRDPISWASILTANNQ 81

Query: 93  IDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
            +     + ++  M K D ++PD+Y F  L+K      A++ GK++H   +         
Sbjct: 82  ANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDV 141

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V+++L+  Y  CG  D+ R +FD     + ++W AM SGY +  +  +  +LF +M  K 
Sbjct: 142 VKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKN 201

Query: 212 VLPTSVTI------------------------------VL--VLSACAKLKDLDVGKRAH 239
           +L  +  I                              +L  ++ A A L  L +GK+ H
Sbjct: 202 LLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIH 261

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
             V       +L + NAL DMYA C ++  A +IFG +  +D++SWT+I+ G    G  +
Sbjct: 262 CLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAE 321

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
                                          EAL+L+  M ++ ++P+E T V ++ AC+
Sbjct: 322 -------------------------------EALSLYNRMLSTGLKPNEVTFVGLIYACS 350

Query: 360 NLGALELGEW-VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTW 417
           ++G +  G +   + I    +   +     L+D+  + G +E+A+ + + M  + D+ TW
Sbjct: 351 HVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATW 410

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGM---VDEGREYFA 473
            A++   A N H +  + +       S+ P D  TY+ + +      M   V + R   A
Sbjct: 411 AALLS--ACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMA 468

Query: 474 DMTIQHGIEPNEAHYGCMV 492
            M ++      E  Y C+V
Sbjct: 469 AMEVK-----KEPGYSCIV 482



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 119/257 (46%), Gaps = 34/257 (13%)

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           +V  L ACA+ +   +GK+ H ++ +  I     L N L +MY  CG +  AL +F  + 
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
           ++D ISW +I+T      Q ++        P                         +F++
Sbjct: 66  HRDPISWASILTA---NNQANLPHLTLSMFP------------------------AMFKQ 98

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
                ++PD +    ++ ACA LGA++ G+ V      + V +D  V ++L+DMY KCG 
Sbjct: 99  ---DGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGL 155

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
            +  + VF  +  K+  +WTAMI G A +G    ++ +F +M     + + +++  ++S 
Sbjct: 156 PDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKM----PVKNLLSWTALISG 211

Query: 459 CTHTGMVDEGREYFADM 475
              +G   +    F +M
Sbjct: 212 LVQSGNWVDSFYLFMEM 228


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/606 (38%), Positives = 352/606 (58%), Gaps = 36/606 (5%)

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
           F  NAL+S Y   G +   +  FD     D V++N   +G+       E+ +LF  M+R+
Sbjct: 90  FSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQRE 149

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G  PT  TIV +L+A A+L DL  GK+ H  +     + N+ + NALTDMYA CGE+  A
Sbjct: 150 GFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQA 209

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQ--------------------------------- 297
             +F  +  K+++SW  +++GY   GQ                                 
Sbjct: 210 RWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQC 269

Query: 298 --VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
             VD AR+ F +  E+D V WTAM+ GY +  R  +AL LF EM   +I PD +T+ S++
Sbjct: 270 GRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVV 329

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
           ++CA L +L  G+ V        + N++ V +ALIDMY KCG ++ A+ VF  M  ++  
Sbjct: 330 SSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVV 389

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           +W AMIVG A NGH   +L++F  ML+    PD VT++G+LSAC H   +++G+EYF  +
Sbjct: 390 SWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSI 449

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535
           + QHG+ P   HY CMV+LLGR G + +A+ +IKNM   P+ ++W  LL  C    D   
Sbjct: 450 SNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVN 509

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
           AE+AA+ + ELDP     Y++L N+YA+  RW +   +R ++  + +KK  G S IE++ 
Sbjct: 510 AEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDN 569

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
            VH F + D++HP++++IY KL+ +   L+  G+ P+ + V  DVGE++K +++  HSEK
Sbjct: 570 EVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEK 629

Query: 656 LAMAFGLISSGPGVT-IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           LA+AFGLI    G++ IRI+KN+R+C DCH   K  S +  R++I+RD  RFHHF  G C
Sbjct: 630 LALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKC 689

Query: 715 SCKDYW 720
           SC D W
Sbjct: 690 SCNDNW 695



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 185/378 (48%), Gaps = 20/378 (5%)

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP-NLILENALTDMYAACGEMGFALEI 273
           TS     ++  C +  +++  KR   +++     P +  L N L  +YA  G++  A  +
Sbjct: 21  TSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNL 80

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  +D  SW A+++ Y   G +   +  FD+MP RD V +   I G+   +  +E+L
Sbjct: 81  FDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESL 140

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LF+ MQ     P E+TIVSIL A A L  L  G+ +   I       ++F+ NAL DMY
Sbjct: 141 ELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMY 200

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KCG++E+A+ +F  + +K+  +W  MI G A NG  +K + +  QM  +  +PD+VT  
Sbjct: 201 AKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMS 260

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            +++A    G VDE R  F++       E +   +  M+    + G   +AL +   M +
Sbjct: 261 TIIAAYCQCGRVDEARRVFSEFK-----EKDIVCWTAMMVGYAKNGREEDALLLFNEMLL 315

Query: 514 ---KPNSIVWGALLGACRVHRDAEMAEM------AAKQILELDPDNEAVYVLLCNIYAAC 564
              +P+S    +++ +C     A++A +        K IL    +N  V   L ++Y+ C
Sbjct: 316 EHIEPDSYTLSSVVSSC-----AKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKC 370

Query: 565 NRWDNFRELRQMILDRGI 582
              D+ R +  ++  R +
Sbjct: 371 GFIDDARSVFNLMPTRNV 388



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 174/430 (40%), Gaps = 99/430 (23%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           ++ G ++     F ++P      +NT I G+S     +  + ++  M +    P  YT  
Sbjct: 100 AKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIV 159

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L    + + + +GK++H  ++   F  +VF+ NAL   Y  CGE++ AR +FD   K 
Sbjct: 160 SILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKK 219

Query: 180 DVVTWNAMFSGYKRVKQ-----------------------------------FDETRKLF 204
           ++V+WN M SGY +  Q                                    DE R++F
Sbjct: 220 NLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF 279

Query: 205 GEMERKGVL-------------------------------PTSVTIVLVLSACAKLKDLD 233
            E + K ++                               P S T+  V+S+CAKL  L 
Sbjct: 280 SEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLH 339

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
            G+  H       +  NL++ +AL DMY+ CG +  A  +F  +  ++V+SW A++ G  
Sbjct: 340 HGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCA 399

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
             G                                 ++AL LF  M     +PD  T + 
Sbjct: 400 QNGHD-------------------------------KDALELFENMLQQKFKPDNVTFIG 428

Query: 354 ILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           IL+AC +   +E G E+  +  +++ +   +     ++++  + G +E+A  + + M   
Sbjct: 429 ILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHD 488

Query: 413 DKF-TWTAMI 421
             F  W+ ++
Sbjct: 489 PDFLIWSTLL 498



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 11/179 (6%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           + ++S      S+H  + +H ++I  GL  N  V + L+    S+ G +  A  VF  +P
Sbjct: 326 SSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDM-YSKCGFIDDARSVFNLMP 384

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             +V  WN MI G ++    K+ + ++ +ML+   +PDN TF  +L        +E G+E
Sbjct: 385 TRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQE 444

Query: 137 L-----HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFS 189
                 + H +    D    + N L  T    G ++ A  +  ++++  D + W+ + S
Sbjct: 445 YFDSISNQHGMTPTLDHYACMVNLLGRT----GRIEQAVALIKNMAHDPDFLIWSTLLS 499


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/692 (36%), Positives = 401/692 (57%), Gaps = 34/692 (4%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           ++ C S+   K++H    K+G   +  V   LV    S  G +  A KVF  +P   V  
Sbjct: 131 LKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLY-SRYGVLDVAHKVFVDMPVKDVGS 189

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           WN MI G+ + + +  G L  L+ +K + V+ D  T   +L    +   V  G  +H HV
Sbjct: 190 WNAMISGFCQ-NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           LK G DS VFV NALI+ Y   G +  A+ +FD     D+V+WN++ + Y++        
Sbjct: 249 LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTAL 308

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
           + F  M+  G+ P  +T+V + S  ++L D    +R  R +                   
Sbjct: 309 RFFKGMQLGGIRPDLLTVVSLTSIFSQLSD----QRISRSI------------------- 345

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
                +GF +       +KDV+   A+V  Y   G ++ A   FDQ+P +D + W  ++ 
Sbjct: 346 -----LGFVIR--REWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVT 398

Query: 322 GYLRVNRFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
           GY +     EA+  +  M+   +  P++ T VSI+ A +++GAL+ G  +   + KN + 
Sbjct: 399 GYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLY 458

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D+FV   LID+Y KCG +E A  +F E+ R     W A+I  L I+G G+++L +F  M
Sbjct: 459 LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDM 518

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           L   +  D +T+V +LSAC+H+G+VDEG++ F  M  ++GI+P+  HYGCMVDLLGRAG+
Sbjct: 519 LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGY 578

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L +A E+++NMP++P++ +WGALL AC+++ +AE+  +A+ ++LE+D +N   YVLL NI
Sbjct: 579 LEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNI 638

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YA   +W+   ++R +  DRG++KTPG S + +      F  G+++HP+  EIY +L  +
Sbjct: 639 YANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVL 698

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
           ++ +K +GY+PD S V+ D+ E++KE+ +  HSE+LA+AFG+IS+ P   IRI KNLR+C
Sbjct: 699 SAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVC 758

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHG 712
            DCH   K +S + +RE++VRD  RFHHFK G
Sbjct: 759 GDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 179/404 (44%), Gaps = 39/404 (9%)

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
           F   + V   K+LH  +L FG   ++ +   LI+ Y   G++ ++R  FD  +K ++ +W
Sbjct: 29  FNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSW 88

Query: 185 NAMFSGYKRVKQFDET----RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           N++ S Y R  ++ E      +LF       + P   T   +L AC  L D   GK+ H 
Sbjct: 89  NSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVH- 144

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
               C +                  +MGF           DV    ++V  Y   G +D+
Sbjct: 145 ----CCVF-----------------KMGF---------EDDVFVAASLVHLYSRYGVLDV 174

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           A + F  MP +D   W AMI G+ +      AL +   M+   ++ D  T+ SIL  CA 
Sbjct: 175 AHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQ 234

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
              +  G  +  ++ K+ + +D+FV NALI+MY K G ++ AQ VF +M  +D  +W ++
Sbjct: 235 SDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSI 294

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I     N     +L  F  M    I PD +T V + S  +        R     +  +  
Sbjct: 295 IAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW 354

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           ++ +      +V++  + G++N A  V   +P K ++I W  L+
Sbjct: 355 LDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK-DTISWNTLV 397


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/655 (38%), Positives = 378/655 (57%), Gaps = 17/655 (2%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYS-RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           A  +FR++P   +  +N +I G S R  +  +       +      P   +F  LL+G+ 
Sbjct: 67  ALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASI---PFPPSVVSFTSLLRGYV 123

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           R   +     L   + +    S   +   L+      G V+ AR +FD     DVV W A
Sbjct: 124 RHGLLADAIRLFQQMPERNHVSYTVLLGGLLDA----GRVNEARRLFDEMPDRDVVAWTA 179

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M SGY +  +  E R LF EM ++ V    V+   ++S  A+  ++++ ++    + E  
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPE-- 233

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              N +   A+   Y   G +  A E+F  +    V +  A++ G+  RG VD A+  F+
Sbjct: 234 --RNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFE 291

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
           +M ERD   W+AMI  Y +     EAL+ FREM    +RP+  +++SILT CA L  L+ 
Sbjct: 292 KMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDY 351

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G  V   + +     D+F  +ALI MY KCG+++KA+RVF     KD   W +MI G A 
Sbjct: 352 GREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ 411

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G+++L +F  M  A + PD +TY+G L+AC++TG V EGRE F  MT+   I P   
Sbjct: 412 HGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAE 471

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY CMVDLLGR+G + EA ++IKNMP++P++++WGAL+GACR+HR+AE+AE AAK++LEL
Sbjct: 472 HYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLEL 531

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK- 605
           +P N   YVLL +IY +  RW++  ++R+ I  R + K+PGCS IE +  VH F +GD  
Sbjct: 532 EPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVL 591

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           +HP+   I   L+++   L   GY  D S V  D+ EE K  ++  HSE+ A+A+GL+  
Sbjct: 592 AHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKI 651

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             G+ IR++KNLR+C DCH   KL++ +  RE+I+RD  RFHHFK G CSC+DYW
Sbjct: 652 PEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 182/411 (44%), Gaps = 41/411 (9%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           NA I+     G ++ AR  F+        ++NA+ +GY R +  D    LF  M  + + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
             +  I  +      L D      A   +      P+++   +L   Y   G +  A+ +
Sbjct: 81  SYNALISGLSLRRQTLPD------AAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRL 134

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  ++ +S+T ++ G ++ G+V+ AR+ FD+MP+RD V WTAM+ GY +  R  EA 
Sbjct: 135 FQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELG-------------EWVKT---YIDKN 377
            LF EM   N+     +  ++++  A  G + L               W      YI   
Sbjct: 195 ALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAG 250

Query: 378 KVKN-----------DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
            V++            +   NA++  + + G V+ A+ VF +M  +D  TW+AMI     
Sbjct: 251 HVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQ 310

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           N    ++L  F +ML   + P+  + + +L+ C    ++D GRE  A M ++   + +  
Sbjct: 311 NEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM-LRCSFDMDVF 369

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV-WGALLGACRVHRDAEMA 536
               ++ +  + G+L++A  V      +P  IV W +++     H   E A
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQHGLGEQA 418



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 167/374 (44%), Gaps = 51/374 (13%)

Query: 54  LVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNG-VLIYLDMLKSDVR 112
           L  +C  + G +  A  +F ++P+ +V  W  MI GY+     +NG V +   + +    
Sbjct: 181 LSGYC--QAGRITEARALFDEMPKRNVVSWTAMISGYA-----QNGEVNLARKLFEVMPE 233

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
            +  ++  +L G+ +   VE   EL   +     +  V   NA++  +   G VD A+ +
Sbjct: 234 RNEVSWTAMLVGYIQAGHVEDAAELFNAMP----EHPVAACNAMMVGFGQRGMVDAAKTV 289

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           F+   + D  TW+AM   Y++ +   E    F EM  +GV P   +++ +L+ CA L  L
Sbjct: 290 FEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVL 349

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
           D G+  H  +  C    ++   +AL  MY  CG +  A  +F   + KD++ W +++TGY
Sbjct: 350 DYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY 409

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G  +                               +AL +F +M+ + + PD  T +
Sbjct: 410 AQHGLGE-------------------------------QALGIFHDMRLAGMSPDGITYI 438

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFRE 408
             LTAC+  G ++ G   +   +   V + I  G    + ++D+  + G VE+A  + + 
Sbjct: 439 GALTACSYTGKVKEG---REIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKN 495

Query: 409 M-LRKDKFTWTAMI 421
           M +  D   W A++
Sbjct: 496 MPVEPDAVIWGALM 509



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           +IS +  C ++  L   +++H+  ++     +    + L+T    + G++  A +VF   
Sbjct: 336 VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYI-KCGNLDKAKRVFHTF 394

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
               + +WN+MI GY++    +  + I+ DM  + + PD  T+   L   +    V+ G+
Sbjct: 395 EPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGR 454

Query: 136 EL 137
           E+
Sbjct: 455 EI 456


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/722 (35%), Positives = 403/722 (55%), Gaps = 42/722 (5%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFC 58
           F N  + P S       + S +  C  +  +++   IH    K+G+  +  V N L++  
Sbjct: 266 FRNLGVVPDSY-----TMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMY 320

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           C   G +    ++F K+       WNTMI GYS++  ++  + ++++M+ +  +PD  T 
Sbjct: 321 CKFNGLID-GRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTI 378

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             +L+       +EFGK +H +++  G++      N LI+ Y  CG +  ++ +F     
Sbjct: 379 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 438

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D V+WN+M + Y +   FDE  KLF +M +  V P SVT V++LS   +L DL +GK  
Sbjct: 439 KDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKEL 497

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H  + +     N+++ N L DMYA CGEMG +L++F N+K                    
Sbjct: 498 HCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK-------------------- 537

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                       RD + W  +I   +        L +   M+T  + PD  T++SIL  C
Sbjct: 538 -----------ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVC 586

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           + L A   G+ +   I K  +++D+ VGN LI+MY KCG +  + +VF+ M  KD  TWT
Sbjct: 587 SLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWT 646

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           A+I    + G G K++  F +M  A I+PD V +V ++ AC+H+G+V+EG  YF  M   
Sbjct: 647 ALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKD 706

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           + IEP   HY C+VDLL R+  L++A + I +MP+KP+S +WGALL ACR+  D E+A+ 
Sbjct: 707 YKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQR 766

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
            +++I+EL+PD+   YVL+ N+YAA  +WD  R +R+ I  RG+KK PGCS +E+   V+
Sbjct: 767 VSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVY 826

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
            F  G K   Q +E+   L  +   +   GY+ ++  V  D+ E++K   +  HSE+LA+
Sbjct: 827 VFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAI 886

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           AFGL+++ PG  ++++KNLR+C DCH + K +S +  RE++VRD  RFH FK G+CSC D
Sbjct: 887 AFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGD 946

Query: 719 YW 720
           YW
Sbjct: 947 YW 948



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 159/546 (29%), Positives = 264/546 (48%), Gaps = 41/546 (7%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR-KIPRPSVC 81
           + +  +  QL ++HS  I LGL  +     KL+      + D   +  VFR   P  +V 
Sbjct: 82  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFR-DPTSSFSVFRLASPSNNVY 140

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
            WN++I+  +        + +Y +  +  ++PD YTFP ++      +  E  K +H  V
Sbjct: 141 XWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRV 200

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           L  GF S +++ NALI  YC   ++D AR +F+     DVV+WN++ SGY     ++E  
Sbjct: 201 LXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEAL 260

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
           +++      GV+P S T+  VL AC  L  ++ G   H  +++  I  ++I+ N L  MY
Sbjct: 261 EIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMY 320

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
                +     IF  +  +D +SW                                 MI 
Sbjct: 321 CKFNGLIDGRRIFDKMVLRDAVSW-------------------------------NTMIC 349

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           GY +V  + E++ LF EM  +  +PD  TI SIL AC +LG LE G++V  Y+  +  + 
Sbjct: 350 GYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 408

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
           D    N LI+MY KCG++  +Q VF  M  KD  +W +MI     NG  D+++ +F +M+
Sbjct: 409 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMM 467

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
           +  + PD VTYV +LS  T  G +  G+E   D+  + G   N      +VD+  + G +
Sbjct: 468 KTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLA-KMGFNSNIVVSNTLVDMYAKCGEM 526

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILE-LDPDNEAVYVLL-- 557
            ++L+V +NM  + + I W  ++ +C    D  +   M ++   E + PD   +  +L  
Sbjct: 527 GDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPV 585

Query: 558 CNIYAA 563
           C++ AA
Sbjct: 586 CSLLAA 591


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/663 (36%), Positives = 371/663 (55%), Gaps = 35/663 (5%)

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
           +GD+  A KVF K+P  +   W  MI    +       + ++L+M+ S   PD +T   +
Sbjct: 218 RGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGV 277

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC---GEVDMARGIFDVSYK 178
           +        +  G++LH   ++ G      V   LI+ Y  C   G +  AR IFD    
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337

Query: 179 DDVVTWNAMFSGYKRVKQFDE-TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
            +V +W AM +GY +   +DE    LF  M    V+P   T    L ACA L  L +G++
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQ 397

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
              +  +        + N+L  MYA                                 G+
Sbjct: 398 VFTHAVKLGFSSVNCVANSLISMYA-------------------------------RSGR 426

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
           +D AR+ FD + E++ + +  +ID Y +     EAL LF E++   +    FT  S+L+ 
Sbjct: 427 IDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSG 486

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
            A++G +  GE +   + K+ +K +  V NALI MY +CG++E A +VF +M  ++  +W
Sbjct: 487 AASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISW 546

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           T++I G A +G   ++L++F +ML   + P+ VTY+ VLSAC+H G+V+EG ++F  M  
Sbjct: 547 TSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYT 606

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
           +HG+ P   HY CMVD+LGR+G L+EA++ I +MP K +++VW   LGACRVH + E+ +
Sbjct: 607 EHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGK 666

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
            AAK I+E +P + A Y+LL N+YA+ ++WD    +R+ + ++ + K  GCS +E+   V
Sbjct: 667 HAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKV 726

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLA 657
           H+F  GD SHP+  EIY +L  ++  +K +GY+P++  V  DV EE KE+ ++QHSEK+A
Sbjct: 727 HKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIA 786

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           +AFGLIS+     IR+ KNLR+C DCH   K +SM   RE+IVRD  RFHH K G CSC 
Sbjct: 787 VAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCN 846

Query: 718 DYW 720
           +YW
Sbjct: 847 EYW 849



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/553 (24%), Positives = 254/553 (45%), Gaps = 50/553 (9%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP-SVCLWNTMIKGYSRI 93
           +H +  +  L  +    N L++   S+ G  + A  +F+ +     +  W+ M+  ++  
Sbjct: 88  VHEKLTQSDLQLDSVTLNSLISLY-SKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANN 146

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF-DSSVFV 152
           +     +L ++DM+++   P+ Y F    +  +    V  G  +   V+K G+  S V V
Sbjct: 147 NMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCV 206

Query: 153 QNALISTYCLC-GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
              LI  +    G++  A  +F+   + + VTW  M +   +     E   LF EM   G
Sbjct: 207 GCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSG 266

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC---GEMG 268
             P   T+  V+SACA ++ L +G++ H       +  +  +   L +MYA C   G M 
Sbjct: 267 YEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMC 326

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A +IF  I + +V SWTA++TGY+ +G  D                             
Sbjct: 327 AARKIFDQILDHNVFSWTAMITGYVQKGGYD----------------------------- 357

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             EAL LFR M  +++ P+ FT  S L ACANL AL +GE V T+  K    +   V N+
Sbjct: 358 -EEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LI MY + G ++ A++ F  +  K+  ++  +I   A N + +++L++F+++    +   
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGAS 476

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             T+  +LS     G + +G +  A + I+ G++ N++    ++ +  R G++  A +V 
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIHARV-IKSGLKLNQSVCNALISMYSRCGNIESAFQVF 535

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLLCNIYAACNR- 566
           ++M  + N I W +++     H  A  A E+  K + E    N   Y+    + +AC+  
Sbjct: 536 EDMEDR-NVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIA---VLSACSHV 591

Query: 567 ------WDNFREL 573
                 W +F+ +
Sbjct: 592 GLVNEGWKHFKSM 604



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 202/415 (48%), Gaps = 39/415 (9%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPR 77
           I  C +M  L   +Q+HSQ I+ GL  +  V   L+     CS  G M  A K+F +I  
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
            +V  W  MI GY +   +    L ++  M+ + V P+++TF   LK      A+  G++
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQ 397

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +  H +K GF S   V N+LIS Y   G +D AR  FD+ ++ +++++N +   Y +   
Sbjct: 398 VFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLN 457

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            +E  +LF E+E +G+  ++ T   +LS  A +  +  G++ H  V +  +  N  + NA
Sbjct: 458 SEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNA 517

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L  MY+ CG +  A ++F ++++++VISWT+I+TG+   G                    
Sbjct: 518 LISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFAT----------------- 560

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYID 375
                         +AL LF +M    +RP+  T +++L+AC+++G +  G +  K+   
Sbjct: 561 --------------QALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYT 606

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           ++ V   +     ++D+  + G + +A +    M  + D   W   +    ++G+
Sbjct: 607 EHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGN 661



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 179/418 (42%), Gaps = 74/418 (17%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M  +G  P   T  L L  C + +  D+G   H  + +  +  + +  N+L  +Y+ CG+
Sbjct: 57  MVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQ 116

Query: 267 MGFALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
              A  IF  +  ++D+ISW+A+V+ + N                               
Sbjct: 117 WEKATSIFQLMGSSRDLISWSAMVSCFANNNM---------------------------- 148

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK-VKNDIF 384
              FR  LT F +M  +   P+E+   +   AC+    + +G+ +  ++ K   +++D+ 
Sbjct: 149 --GFRALLT-FVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVC 205

Query: 385 VGNALIDMYCKC-GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
           VG  LIDM+ K  GD+  A +VF +M  ++  TWT MI  L   G+  +++D+F +M+ +
Sbjct: 206 VGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILS 265

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG------- 496
              PD  T  GV+SAC +  ++  G++  +   I+HG+  +     C++++         
Sbjct: 266 GYEPDRFTLSGVISACANMELLLLGQQLHSQ-AIRHGLTLDRCVGCCLINMYAKCSVDGS 324

Query: 497 ----------------------------RAGHLNEALEVIKNMPMK---PNSIVWGALLG 525
                                       + G+  EAL++ + M +    PN   + + L 
Sbjct: 325 MCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLK 384

Query: 526 ACRVHRDAEMAEMAAKQILELDPDN-EAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           AC       + E      ++L   +   V   L ++YA   R D+ R+   ++ ++ +
Sbjct: 385 ACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNL 442



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 5/200 (2%)

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
           R  +A++    M      PD  T    L  C    + ++G  V   + ++ ++ D    N
Sbjct: 46  RLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLN 105

Query: 388 ALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           +LI +Y KCG  EKA  +F+ M   +D  +W+AM+   A N  G ++L  F  M+     
Sbjct: 106 SLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYY 165

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MVDLLGRA-GHLNEA 504
           P+E  +     AC+    V  G   F    ++ G   ++   GC ++D+  +  G L  A
Sbjct: 166 PNEYCFAAATRACSTAEFVSVGDSIFG-FVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSA 224

Query: 505 LEVIKNMPMKPNSIVWGALL 524
            +V + MP + N++ W  ++
Sbjct: 225 FKVFEKMPER-NAVTWTLMI 243


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/641 (38%), Positives = 373/641 (58%), Gaps = 41/641 (6%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN  ++  +        + +Y  ML+S   PD ++FPF+LK          G++LHCHV 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD--VVTWNAMFSGYKRVKQFDET 200
           K G ++  FV  ALIS YC CG V  AR +F+ + +     V +NA+ SGY    +  + 
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             +F  M+  GV   SVT++ ++  C   + L +G+  H                     
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLH--------------------- 179

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
              C + G          + +V    + +T Y+  G V+  R+ FD+MP +  + W A+I
Sbjct: 180 -GQCVKGGL---------DSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVI 229

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            GY +     + L L+ +M++S + PD FT+VS+L++CA+LGA ++G  V   ++ N   
Sbjct: 230 SGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFV 289

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            ++FV NA I MY +CG++ KA+ VF  M  K   +WTAMI    ++G G+  L +F  M
Sbjct: 290 PNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDM 349

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           ++  I PD   +V VLSAC+H+G+ D+G E F  M  ++ +EP   HY C+VDLLGRAG 
Sbjct: 350 IKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 409

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L+EA+E I++MP++P+  VWGALLGAC++H++ +MAE+A  +++E +P+N   YVL+ NI
Sbjct: 410 LDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNI 469

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           Y+     +    +R M+ +R  +K PG S +E  G VH F+AGD+SH QT+E++  LDE+
Sbjct: 470 YSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL 529

Query: 621 -TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
            TS ++  G M        D GEE       +HSE+LA+AFG+++S PG  I ++KNLR+
Sbjct: 530 ETSVMELAGNMD------CDRGEE-VSSTTREHSERLAIAFGILNSIPGTEILVIKNLRV 582

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C DCH   K VS + DR+ +VRD +RFH+FK G CSCKDYW
Sbjct: 583 CEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 206/448 (45%), Gaps = 45/448 (10%)

Query: 18  PLISPIETCESMH---QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRK 74
           P I  +++C S+      +Q+H    K G  T P V   L++  C + G +  A KVF +
Sbjct: 57  PFI--LKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYC-KCGLVADARKVFEE 113

Query: 75  IPRP---SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
            P+    SVC +N +I GY+      +   ++  M ++ V  D+ T   L+   T    +
Sbjct: 114 NPQSSQLSVC-YNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYL 172

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             G+ LH   +K G DS V V N+ I+ Y  CG V+  R +FD      ++TWNA+ SGY
Sbjct: 173 WLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGY 232

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            +     +  +L+ +M+  GV P   T+V VLS+CA L    +G    + V+    VPN+
Sbjct: 233 SQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNV 292

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + NA   MYA CG +  A  +F  +  K ++SWTA++  Y   G  ++    FD M +R
Sbjct: 293 FVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKR 352

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWV 370
                                           IRPD    V +L+AC++ G  + G E  
Sbjct: 353 -------------------------------GIRPDGAVFVMVLSACSHSGLTDKGLELF 381

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           +    + K++      + L+D+  + G +++A      M +  D   W A++    I+ +
Sbjct: 382 RAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKN 441

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            D +   F++++     P+ + Y  ++S
Sbjct: 442 VDMAELAFAKVIEFE--PNNIGYYVLMS 467


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/593 (40%), Positives = 360/593 (60%), Gaps = 38/593 (6%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLC--GEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K+ H  +L+     +    + LIS   L   G+++ AR +F      D    N M  GY 
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           R +   E   L+  M  +GV   + T   VL+ACA+L  + +G+R H  V +     +L 
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + NAL   Y  CG  G A ++                               FD+   RD
Sbjct: 148 VINALIQFYHNCGSFGCACDV-------------------------------FDESTVRD 176

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVK 371
            V W  MI+ +L      +A  L  EM +  N+RPDE T+VS++ ACA LG LE G+++ 
Sbjct: 177 VVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLH 236

Query: 372 TY---IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           +Y   +DK ++  D+ +  AL+DMY KCG ++ A +VFR M  ++ FTW A+I GLA++G
Sbjct: 237 SYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHG 296

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
           HG+ ++ +F QM    ++PD+VT++ +L AC+H G+VDEG   F  M  +  IEP   HY
Sbjct: 297 HGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHY 356

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
           GC+VDLL RA  +++AL  I+NMP+K NS++W  LLGACR     ++AE   ++++EL+P
Sbjct: 357 GCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEP 416

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
           D+   YV+L N+YA  ++WD+  +LR+ + ++GI+KTPGCS IE+NG++H+FVAGD+SH 
Sbjct: 417 DSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHL 476

Query: 609 QTKEIYLKLDEMTSDLKF-VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           QT++IY  ++EMT  +    G++P  + V  D+ EE+KE +++ HSEKLA+A GLIS+  
Sbjct: 477 QTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPS 536

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G  IRIVKNLR+C DCH   K+ S VY+RE++ RD++RFHHFK GSCSC D+W
Sbjct: 537 GSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/432 (31%), Positives = 217/432 (50%), Gaps = 38/432 (8%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDM 65
           I P S  T+   +      C S+ + KQ H+  ++  LL NP   +KL++F   S  GD+
Sbjct: 2   IKPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDL 61

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
            YA K+F ++  P   + NTMI+GY+R  +    V +Y  M++  V  DNYT+PF+L   
Sbjct: 62  NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAAC 121

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
            R  AV+ G+  HC VLK GF S +FV NALI  Y  CG    A  +FD S   DVVTWN
Sbjct: 122 ARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWN 181

Query: 186 AMFSGYKRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
            M + +      ++   L  EM +   + P  VT+V ++ ACA+L +L+ GK  H Y KE
Sbjct: 182 IMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKE 241

Query: 245 C---KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
               +I  +L+LE AL DMYA CG +  AL++F  ++ ++V +W A++ G    G  +  
Sbjct: 242 LDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGE-- 299

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                        +A++LF +M+   + PD+ T +++L AC++ 
Sbjct: 300 -----------------------------DAISLFDQMEHDKLMPDDVTFIALLCACSHA 330

Query: 362 GALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTA 419
           G ++ G    +   +K +++  +     ++D+ C+   V+ A      M ++ +   W  
Sbjct: 331 GLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWAT 390

Query: 420 MIVGLAINGHGD 431
           ++      GH D
Sbjct: 391 LLGACRSGGHFD 402


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/738 (32%), Positives = 400/738 (54%), Gaps = 69/738 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           LI      +S  Q KQ+H+Q I+   L++ +    +V    +    +  A  +F+ +  P
Sbjct: 11  LIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSAS--IVISIYTNLKLLHEALLLFKTLKSP 68

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            V  W ++I+ ++        +  +++M  S   PD+  FP +LK  T  + + FG+ +H
Sbjct: 69  PVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVH 128

Query: 139 CHVLKFGFDSSVFVQNALISTYC-LCG--------------------------------- 164
             +++ G D  ++  NAL++ Y  L G                                 
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIM 188

Query: 165 --EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
              +D  R +F+V  + DVV++N + +GY +   +++  ++  EM    + P S T+  V
Sbjct: 189 PFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSV 248

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L   ++  D+  GK  H YV    I  ++ + ++L DMYA                    
Sbjct: 249 LPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYA-------------------- 288

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
                         +++ + + F ++  RD + W +++ GY++  R+ EAL LFR+M T+
Sbjct: 289 -----------KSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTA 337

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
            ++P      S++ ACA+L  L LG+ +  Y+ +    ++IF+ +AL+DMY KCG+++ A
Sbjct: 338 KVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAA 397

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           +++F  M   D+ +WTA+I+G A++GHG +++ +F +M R  + P++V +V VL+AC+H 
Sbjct: 398 RKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHV 457

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G+VDE   YF  MT  +G+     HY  + DLLGRAG L EA   I  M ++P   VW  
Sbjct: 458 GLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWST 517

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL +C VH++ E+AE  A++I  +D +N   YVL+CN+YA+  RW    +LR  +  +G+
Sbjct: 518 LLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGL 577

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           +K P CS IEM    H FV+GD+SHP   +I   L  +   ++  GY+ D S V  DV E
Sbjct: 578 RKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDE 637

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E K   ++ HSE+LA+AFG+I++ PG TIR+ KN+R+C DCH   K +S + +RE+IVRD
Sbjct: 638 EHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRD 697

Query: 703 KTRFHHFKHGSCSCKDYW 720
            +RFHHF  G+CSC DYW
Sbjct: 698 NSRFHHFNRGNCSCGDYW 715


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/731 (34%), Positives = 406/731 (55%), Gaps = 57/731 (7%)

Query: 10  PSTLTQETPLISPIETC------ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           PS+ T    L+S +  C      E +   KQ+H+  ++ G L N  + N LV     + G
Sbjct: 110 PSSFT----LVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMY-GKLG 163

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            +  +  +        +  WNT++    + +     +    +M+   V PD +T   +L 
Sbjct: 164 KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLP 223

Query: 124 GFTRDIAVEFGKELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
             +    +  GKELH + LK G  D + FV +AL+  YC C +V   R +FD  +   + 
Sbjct: 224 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIG 283

Query: 183 TWNAMFSGYKRVKQFDETRKLF-GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
            WNAM +GY + +   E   LF G  E  G+L  S T+  V+ AC +       +  H +
Sbjct: 284 LWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF 343

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           V +  +  +  ++N L DMY+                                 G++D+A
Sbjct: 344 VVKRGLDRDRFVQNTLMDMYS-------------------------------RLGKIDIA 372

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT-----------SNIRPDEFT 350
            + F +M +RD V W  MI GY+      +AL L  +MQ             +++P+  T
Sbjct: 373 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 432

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           +++IL +CA L AL  G+ +  Y  KN +  D+ VG+AL+DMY KCG ++ +++VF ++ 
Sbjct: 433 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 492

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
           +K+  TW  +I+   ++G+G +++D+   M+   + P+EVT++ V +AC+H+GMVDEG  
Sbjct: 493 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 552

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLGACRV 529
            F  M   +G+EP+  HY C+VDLLGRAG + EA +++  MP   N    W +LLGA R+
Sbjct: 553 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 612

Query: 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS 589
           H + E+ E+AA+ +++L+P+  + YVLL NIY++   WD   E+R+ + ++G++K PGCS
Sbjct: 613 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 672

Query: 590 MIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAV 649
            IE    VH+FVAGD SHPQ++++   L+ +   ++  GY+PD S V  +V E++KE  +
Sbjct: 673 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILL 732

Query: 650 YQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHF 709
             HSEKLA+AFG++++ PG  IR+ KNLR+C DCH   K +S + DRE+I+RD  RFH F
Sbjct: 733 CGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRF 792

Query: 710 KHGSCSCKDYW 720
           K+G+CSC DYW
Sbjct: 793 KNGTCSCGDYW 803



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 151/565 (26%), Positives = 260/565 (46%), Gaps = 56/565 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           L+  +   + M   KQIH+   K G  + + TV N LV     + GD     KVF +I  
Sbjct: 16  LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLY-RKCGDFGAVYKVFDRISE 74

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE---FG 134
            +   WN++I      +  +  +  +  ML  +V P ++T   ++   +     E    G
Sbjct: 75  RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMG 134

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K++H + L+ G + + F+ N L++ Y   G++  ++ +       D+VTWN + S   + 
Sbjct: 135 KQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 193

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECKIVPNLIL 253
           +Q  E  +   EM  +GV P   TI  VL AC+ L+ L  GK  H Y +K   +  N  +
Sbjct: 194 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 253

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            +AL DMY  C               K V+S                 R+ FD M +R  
Sbjct: 254 GSALVDMYCNC---------------KQVLS----------------GRRVFDGMFDRKI 282

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKT 372
            LW AMI GY +    +EAL LF  M+ S  +  +  T+  ++ AC   GA    E +  
Sbjct: 283 GLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHG 342

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           ++ K  +  D FV N L+DMY + G ++ A R+F +M  +D  TW  MI G   + H + 
Sbjct: 343 FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 402

Query: 433 SLDMFSQML-----------RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
           +L +  +M            R S+ P+ +T + +L +C     + +G+E  A   I++ +
Sbjct: 403 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA-YAIKNNL 461

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAA 540
             + A    +VD+  + G L  + +V   +P K N I W  ++ A  +H + + A ++  
Sbjct: 462 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGNGQEAIDLLR 520

Query: 541 KQILELDPDNEAVYVLLCNIYAACN 565
             +++    NE  ++   +++AAC+
Sbjct: 521 MMMVQGVKPNEVTFI---SVFAACS 542



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 206/425 (48%), Gaps = 40/425 (9%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD-SSVFVQNALISTYCLCG 164
           M+   ++PDNY FP LLK       +E GK++H HV KFG+   SV V N L++ Y  CG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
           +      +FD   + + V+WN++ S     ++++   + F  M  + V P+S T+V V++
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 225 ACAKL---KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           AC+ L   + L +GK+ H Y      + + I+ N L  MY   G++  +  + G+   +D
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRD 179

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           +++W  +++      Q+                                EAL   REM  
Sbjct: 180 LVTWNTVLSSLCQNEQL-------------------------------LEALEYLREMVL 208

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVE 400
             + PDEFTI S+L AC++L  L  G+ +  Y  KN  +  + FVG+AL+DMYC C  V 
Sbjct: 209 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 268

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR-ASIIPDEVTYVGVLSAC 459
             +RVF  M  +    W AMI G + N H  ++L +F  M   A ++ +  T  GV+ AC
Sbjct: 269 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 328

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
             +G     +E      ++ G++ +      ++D+  R G ++ A+ +   M  + + + 
Sbjct: 329 VRSGAFSR-KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVT 386

Query: 520 WGALL 524
           W  ++
Sbjct: 387 WNTMI 391



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 119/239 (49%), Gaps = 13/239 (5%)

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND-IFVGNALIDMYCKCGDVEKA 402
           I+PD +   ++L A A+L  +ELG+ +  ++ K     D + V N L+++Y KCGD    
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
            +VF  +  +++ +W ++I  L      + +L+ F  ML  ++ P   T V V++AC++ 
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 463 GMVDE---GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
            M +    G++  A   ++ G E N      +V + G+ G L  +  ++ +   + + + 
Sbjct: 126 PMPEGLMMGKQVHA-YGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR-DLVT 182

Query: 520 WGALLGA-CRVHRDAEMAEMAAKQILE-LDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           W  +L + C+  +  E  E   + +LE ++PD       + ++  AC+  +  R  +++
Sbjct: 183 WNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE----FTISSVLPACSHLEMLRTGKEL 237


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/688 (35%), Positives = 380/688 (55%), Gaps = 32/688 (4%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            +Q+H+ T KLG  +N  ++  L+    ++  D++ A   F +    +V LWN M+  Y  
Sbjct: 369  QQLHAYTTKLGFASNNKIEGALLNLY-AKCADIETALDYFLETEVENVVLWNVMLVAYGL 427

Query: 93   IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            +D  +N   I+  M   ++ P+ YT+P +LK   R   +E G+++H  ++K  F  + +V
Sbjct: 428  LDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYV 487

Query: 153  QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             + LI  Y   G++D A  I       DVV+W  M +GY +    D+    F +M  +G+
Sbjct: 488  CSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI 547

Query: 213  LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
                V +   +SACA L+ L  G++ H          +L  +NAL  +Y+ CG++  +  
Sbjct: 548  RSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYL 607

Query: 273  IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
             F   +  D I+W A+V+G+   G  +                               EA
Sbjct: 608  AFEQTEAGDNIAWNALVSGFQQSGNNE-------------------------------EA 636

Query: 333  LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
            L +F  M    I  + FT  S + A +    ++ G+ V   I K    ++  V NALI M
Sbjct: 637  LRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISM 696

Query: 393  YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
            Y KCG +  A++ F E+  K++ +W A+I   + +G G ++LD F QM+ +++ P+ VT 
Sbjct: 697  YAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTL 756

Query: 453  VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
            VGVLSAC+H G+VD+G  YF  M  ++G+ P   HY C+VD+L RAG L+ A E I+ MP
Sbjct: 757  VGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMP 816

Query: 513  MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            +KP+++VW  LL AC VH++ E+ E AA  +LEL+P++ A YVLL N+YA   +WD    
Sbjct: 817  IKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDL 876

Query: 573  LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
             RQ + ++G+KK PG S IE+   +H F  GD++HP   EI+    ++T     +GY+ D
Sbjct: 877  TRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQD 936

Query: 633  ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
               +  ++  E K+  ++ HSEKLA++FGL+S    V I ++KNLR+C DCH   K VS 
Sbjct: 937  CFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSK 996

Query: 693  VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            V +RE+IVRD  RFHHF+ G+CSCKDYW
Sbjct: 997  VSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 145/505 (28%), Positives = 228/505 (45%), Gaps = 34/505 (6%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           ++QIH++ +  GL  +  V N L+    S  G +  A +VF  +       W  MI G S
Sbjct: 166 VEQIHARILYQGLRDSTVVCNPLIDLY-SRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 224

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           + +     + ++ DM    + P  Y F  +L    +  ++E G++LH  VLK GF S  +
Sbjct: 225 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 284

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V NAL+S Y   G +  A  IF    + D VT+N + +G  +    ++  +LF  M   G
Sbjct: 285 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 344

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           + P S T+  ++ AC+    L  G++ H Y  +     N  +E AL ++YA C ++  AL
Sbjct: 345 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 404

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           + F   + ++V                               VLW  M+  Y  ++  R 
Sbjct: 405 DYFLETEVENV-------------------------------VLWNVMLVAYGLLDDLRN 433

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           +  +FR+MQ   I P+++T  SIL  C  LG LELGE + + I K   + + +V + LID
Sbjct: 434 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 493

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY K G ++ A  +      KD  +WT MI G       DK+L  F QML   I  DEV 
Sbjct: 494 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 553

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
               +SAC     + EG++  A   +  G   +      +V L  R G + E+    +  
Sbjct: 554 LTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 612

Query: 512 PMKPNSIVWGALLGACRVHRDAEMA 536
               N I W AL+   +   + E A
Sbjct: 613 EAGDN-IAWNALVSGFQQSGNNEEA 636



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/552 (24%), Positives = 262/552 (47%), Gaps = 42/552 (7%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           + ++S  +  ES+   +Q+H   +KLG  ++  V N LV+      G++  A  +F  + 
Sbjct: 252 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYF-HLGNLISAEHIFSNMS 310

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           +     +NT+I G S+    +  + ++  M    + PD+ T   L+   + D  +  G++
Sbjct: 311 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 370

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           LH +  K GF S+  ++ AL++ Y  C +++ A   F  +  ++VV WN M   Y  +  
Sbjct: 371 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 430

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
              + ++F +M+ + ++P   T   +L  C +L DL++G++ H  + +     N  + + 
Sbjct: 431 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 490

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY-FDQMPERDYVL 315
           L DMYA  G++  A +I      KDV+SWT ++ GY          QY FD         
Sbjct: 491 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT---------QYNFDD-------- 533

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
                          +ALT FR+M    IR DE  + + ++ACA L AL+ G+ +     
Sbjct: 534 ---------------KALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 578

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
            +   +D+   NAL+ +Y +CG +E++   F +    D   W A++ G   +G+ +++L 
Sbjct: 579 VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 638

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +F +M R  I  +  T+   + A + T  + +G++  A +T + G +        ++ + 
Sbjct: 639 VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVIT-KTGYDSETEVCNALISMY 697

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAV 553
            + G +++A +    +  K N + W A++ A   H     A  +  Q++   + P+    
Sbjct: 698 AKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPN---- 752

Query: 554 YVLLCNIYAACN 565
           +V L  + +AC+
Sbjct: 753 HVTLVGVLSACS 764



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 145/568 (25%), Positives = 262/568 (46%), Gaps = 37/568 (6%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+  T +  L   ++T  S+ + +++HSQ +KLGL +N  +  KL  F    KGD+  A 
Sbjct: 42  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLF-KGDLYGAF 100

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-D 128
           KVF ++P  ++  WN MIK  +  +       +++ M+  +V P+  TF  +L+      
Sbjct: 101 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 160

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
           +A +  +++H  +L  G   S  V N LI  Y   G VD+AR +FD     D  +W AM 
Sbjct: 161 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 220

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           SG  + +   E  +LF +M   G++PT      VLSAC K++ L++G++ H  V +    
Sbjct: 221 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 280

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            +  + NAL  +Y   G +  A  IF N+  +D +++  ++ G    G  +         
Sbjct: 281 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE--------- 331

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                                 +A+ LF+ M    + PD  T+ S++ AC+  G L  G+
Sbjct: 332 ----------------------KAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 369

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            +  Y  K    ++  +  AL+++Y KC D+E A   F E   ++   W  M+V   +  
Sbjct: 370 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 429

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
               S  +F QM    I+P++ TY  +L  C   G ++ G +  + + I+   + N    
Sbjct: 430 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI-IKTNFQLNAYVC 488

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
             ++D+  + G L+ A +++     K + + W  ++     +   + A    +Q+L+   
Sbjct: 489 SVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI 547

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQM 576
            ++ V   L N  +AC      +E +Q+
Sbjct: 548 RSDEVG--LTNAVSACAGLQALKEGQQI 573



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 159/375 (42%), Gaps = 43/375 (11%)

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK-DLDVGKRAHRYVKECKIVPNLIL 253
           + F E R     +E +G+ P   T+  +L  C K    LD G++ H  + +  +  N  L
Sbjct: 25  ESFQEKR--IDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCL 82

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
              L D Y   G++  A ++F                               D+MPER  
Sbjct: 83  SEKLFDFYLFKGDLYGAFKVF-------------------------------DEMPERTI 111

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG-ALELGEWVKT 372
             W  MI      N   E   LF  M + N+ P+E T   +L AC     A ++ E +  
Sbjct: 112 FTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHA 171

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            I    +++   V N LID+Y + G V+ A+RVF  +  KD  +W AMI GL+ N    +
Sbjct: 172 RILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAE 231

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           ++ +F  M    I+P    +  VLSAC     ++ G E    + ++ G   +      +V
Sbjct: 232 AIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLVLKLGFSSDTYVCNALV 290

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAAKQILE-LDPDN 550
            L    G+L  A  +  NM  + +++ +  L+ G  +     +  E+  +  L+ L+PD+
Sbjct: 291 SLYFHLGNLISAEHIFSNMSQR-DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 349

Query: 551 EAVYVLLCNIYAACN 565
                 L ++  AC+
Sbjct: 350 NT----LASLVVACS 360



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 14  TQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           + E  L + +  C  +  LK   QIH+Q    G  ++   QN LVT   S  G ++ +  
Sbjct: 549 SDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL-YSRCGKIEESYL 607

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
            F +        WN ++ G+ +  +++  + +++ M +  +  +N+TF   +K  +    
Sbjct: 608 AFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETAN 667

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV-DMARGIFDVSYKDDVVTWNAMFS 189
           ++ GK++H  + K G+DS   V NALIS Y  CG + D  +   +VS K++ V+WNA+ +
Sbjct: 668 MKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE-VSWNAIIN 726

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
            Y +     E    F +M    V P  VT+V VLSAC+ +  +D G
Sbjct: 727 AYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 772


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/519 (43%), Positives = 323/519 (62%), Gaps = 30/519 (5%)

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLK-DLDVGKRAHRYVKECKIVPNLILENALTDMY 261
            F  M R  V+P   T   +L ACA L    DVG +AH    +     +  + N L  MY
Sbjct: 113 FFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY 172

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           +           FG                    G +  AR  FD+MP+   V W+AMI 
Sbjct: 173 SC----------FGG-------------------GFLGDARNVFDRMPKESAVTWSAMIG 203

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           GY+R     +A+ LFREMQ + ++ DE T++ +L A  +LGALEL  WV+ ++++  +  
Sbjct: 204 GYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGK 263

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
            + + NALID   KCGDV+ A  VF  M ++   +WT++I  LA+ G G +++ +F +M 
Sbjct: 264 SVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMK 323

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
            A + PD+V ++GVL+AC+H GMVDEG  YF  M +++GIEP   HYGCMVD+ GRAG +
Sbjct: 324 VAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMV 383

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
             A+E ++ MP++PN ++W +L+ ACR H   E+ E   + +L   P +EA Y++L N++
Sbjct: 384 ERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVF 443

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMT 621
           A   RW    E+R+ +  RGIKK PGCS++E++G VHEF+AGD+SHPQ K+IY  ++EM 
Sbjct: 444 ALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMA 503

Query: 622 SDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCV 681
            +L+ VG++   SEV LD+ EEDKE A+  HSEKLA+AF L+ + PG  +R+VKNLR+C 
Sbjct: 504 RELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCS 563

Query: 682 DCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           DCH   K +S VY RE++VRD++RFH FK GSCSCKD+W
Sbjct: 564 DCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 148/321 (46%), Gaps = 12/321 (3%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           Q H+  +K G  T+  V N L+  + C   G +  A  VF ++P+ S   W+ MI GY R
Sbjct: 148 QAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVR 207

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                + V ++ +M  + V+ D  T   +L   T   A+E  + +   V + G   SV +
Sbjct: 208 GGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTL 267

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NALI T   CG+VD A  +F+   +  VV+W ++        +  E  ++F EM+  GV
Sbjct: 268 CNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGV 327

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFAL 271
            P  V  + VL+AC+    +D G      +K E  I P +     + DM+   G +  A+
Sbjct: 328 PPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAM 387

Query: 272 EIFGNIK-NKDVISWTAIVTGYINRGQVDMA----RQYFDQMP--ERDYVLWTAMIDGYL 324
           E    +    + + W ++V+     G++++     R    + P  E +Y++ + +   + 
Sbjct: 388 EFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNV---FA 444

Query: 325 RVNRFREALTLFREMQTSNIR 345
              R++E   + REM    I+
Sbjct: 445 LTQRWKEKSEIRREMSKRGIK 465



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 6/202 (2%)

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANL-GALELGEWVKTYIDKNKVKNDIFVG 386
           R R A   F  M    + P++FT   +L ACA L G+ ++G        K     D +V 
Sbjct: 107 RLRAA-AFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVS 165

Query: 387 NALIDMYCKCGD--VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           N LI MY   G   +  A+ VF  M ++   TW+AMI G    G    ++D+F +M    
Sbjct: 166 NTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANG 225

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           +  DEVT +GVL+A T  G ++  R +      + GI  +      ++D L + G ++ A
Sbjct: 226 VQADEVTVIGVLAAATDLGALELAR-WVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGA 284

Query: 505 LEVIKNMPMKPNSIVWGALLGA 526
           + V + M  + + + W +++ A
Sbjct: 285 VAVFEGMQQR-SVVSWTSVIDA 305


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/705 (34%), Positives = 401/705 (56%), Gaps = 38/705 (5%)

Query: 20  ISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           +  ++ C  + QL   +++H+  +K G   N      LV +  +  G +  A +VFR+I 
Sbjct: 269 VGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMY--ARCGWVDSALRVFREIG 326

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
                 WN+M+  Y +   +   +  + +M+++   PD+     LL        +  G+E
Sbjct: 327 DKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGRE 386

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H + +K   DS + + N L+  Y  C  V+ +  +FD     D V+W  + + Y +  +
Sbjct: 387 VHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSR 446

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
           + E    F   +++G+    + +  +L AC+ LK + + K+ H Y     ++ +LIL+N 
Sbjct: 447 YSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLL-DLILKNR 505

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           + D+Y  CGE+ +AL IF                               + + ++D V W
Sbjct: 506 IIDIYGECGEVCYALNIF-------------------------------EMLDKKDIVTW 534

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           T+M++ +       EA+ LF +M  + I+PD   +V IL A A L +L  G+ +  ++ +
Sbjct: 535 TSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIR 594

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
            K   +  V ++L+DMY  CG +  A +VF E   KD   WTAMI    ++GHG +++ +
Sbjct: 595 GKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYI 654

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F +ML   + PD V+++ +L AC+H+ +VDEG+ Y   M  ++ ++P + HY C+VDLLG
Sbjct: 655 FKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLG 714

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R+G   EA + IK+MP++P S+VW ALLGACR+H++ E+A +A  ++LEL+PDN   YVL
Sbjct: 715 RSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVL 774

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           + N++A   +W+N +E+R  + ++G++K P CS IE+   VH F A D SH  ++ I+LK
Sbjct: 775 VSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLK 834

Query: 617 LDEMTSDLKFVG-YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
           L E+T  L+  G Y+ D S V  DV EE+K   +++HSE+LA++FGLIS+  G  +RI K
Sbjct: 835 LAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAK 894

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH   KLVS +++RE++VRD  RFHHF  G+CSC D+W
Sbjct: 895 NLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 146/529 (27%), Positives = 233/529 (44%), Gaps = 53/529 (10%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPT---VQNKLVTFCCSEKGD 64
           +PP T      ++  +    ++ + +Q+H+  +  G L +     +  KL+ F   + G 
Sbjct: 51  APPPT-DHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLL-FMYGKCGR 108

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD----VRPDNYTFPF 120
           +  A ++F  +P  +V  WN +I            V +Y  M  S+      PD  T   
Sbjct: 109 LPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLAS 168

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKD 179
           +LK    +     G E+H   +K G D S  V NAL+  Y  CG +D A  +F+ +    
Sbjct: 169 VLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGR 228

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           DV +WN+  SG  +   F E   LF  M+  G    S T V VL  CA+L  L+ G+  H
Sbjct: 229 DVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELH 288

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
             + +C    N I  NAL  MYA CG +  AL +F  I +KD ISW ++++ Y+      
Sbjct: 289 AALLKCGTEFN-IQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQ----- 342

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNR-FREALTLFREMQTSNIRPDEFTIVSILTAC 358
                                      NR + EA+  F EM  +   PD   IVS+L+A 
Sbjct: 343 ---------------------------NRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAV 375

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
            +LG L  G  V  Y  K ++ +D+ + N L+DMY KC  VE + RVF  M  KD  +WT
Sbjct: 376 GHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWT 435

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT---HTGMVDEGREYFADM 475
            +I   A +    +++  F    +  I  D +    +L AC+      ++ +   Y    
Sbjct: 436 TIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRN 495

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
            +   I  N      ++D+ G  G +  AL + + M  K + + W +++
Sbjct: 496 GLLDLILKNR-----IIDIYGECGEVCYALNIFE-MLDKKDIVTWTSMV 538



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 145/321 (45%), Gaps = 28/321 (8%)

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS--- 342
           T ++  Y   G++  A + FD MP R    W A+I   L      EA+ ++R M+ S   
Sbjct: 97  TKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPV 156

Query: 343 -NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
               PD  T+ S+L AC   G    G  V     K+ +     V NAL+ MY KCG ++ 
Sbjct: 157 AGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDS 216

Query: 402 AQRVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           A RVF E +R  +D  +W + I G   NG   ++LD+F +M       +  T VGVL  C
Sbjct: 217 ALRVF-EWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVC 275

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
                ++ GRE  A + ++ G E N      +V +  R G ++ AL V + +  K + I 
Sbjct: 276 AELAQLNHGRELHAAL-LKCGTEFNIQCNALLV-MYARCGWVDSALRVFREIGDK-DYIS 332

Query: 520 WGALLGACRVHRD--AEMAEMAAKQILE-LDPDNEAVYVLLCNI--------------YA 562
           W ++L +C V     AE  +   + +    +PD+  +  LL  +              YA
Sbjct: 333 WNSML-SCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYA 391

Query: 563 ACNRWDNFRELRQMILDRGIK 583
              R D+  ++   ++D  IK
Sbjct: 392 VKQRLDSDLQIANTLMDMYIK 412



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%)

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
           F+   L+ MY KCG +  A R+F  M  +  F+W A+I     +G   +++ ++  M RA
Sbjct: 94  FLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAM-RA 152

Query: 444 S-----IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           S       PD  T   VL AC   G    G E    + ++ G++ +      +V +  + 
Sbjct: 153 SEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHG-LAVKSGLDRSTLVANALVGMYAKC 211

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGAC 527
           G L+ AL V + M    +   W + +  C
Sbjct: 212 GLLDSALRVFEWMRDGRDVASWNSAISGC 240


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/577 (42%), Positives = 354/577 (61%), Gaps = 24/577 (4%)

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG------EMERKGVLPTSVT 218
           ++D A  IF+   + +  +WN +  G+    + DE + L         M  + + P   T
Sbjct: 67  DLDYAHKIFNQMPQRNCFSWNTIIRGFS---ESDEDKALIAITLFCEMMSDEFIEPNRFT 123

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF-GNI 277
              VL ACAK   +  GK+ H    +     +  + + L  MY  CG M  A  +F  NI
Sbjct: 124 FPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNI 183

Query: 278 -------------KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
                        ++ +V+ W  ++ GY+  G    AR  FD+M +R  V W  MI GY 
Sbjct: 184 IEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYS 243

Query: 325 RVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
           +   F++A+ +FREM+   +IRP+  T+VS+L A + LG+LELGEW+  Y + + ++ D 
Sbjct: 244 QNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDD 303

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
            +G+ALIDMY KCG +EKA  VF  + R++  TW+AMI G AI+G    ++D F +M +A
Sbjct: 304 VLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQA 363

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            + P +V Y+ +L+AC+H G+V+EGR YF+ M    G+EP   HYGCMVDLLGR G L+E
Sbjct: 364 GVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDE 423

Query: 504 ALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563
           A E I NMP+KP+ ++W ALLGACR+HR+ EM +  A  ++++ P +   YV L N+YA+
Sbjct: 424 AEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYAS 483

Query: 564 CNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSD 623
              W    E+R  + +  I+K PGCS I+++GV+HEF+  D SHP+ KEI   L E++  
Sbjct: 484 QGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDK 543

Query: 624 LKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDC 683
           L+  GY P  ++V L++ EEDKE A++ HSEK+A AFGLIS+ PG  IRIVKNLR+C DC
Sbjct: 544 LRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDC 603

Query: 684 HRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           H   KL+S VY R++ VRD+ RFHHF+ GSCSC DYW
Sbjct: 604 HSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 196/419 (46%), Gaps = 83/419 (19%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           M    ++  P   +  + L   I TC ++  L QIH+  IK G + +     +++ FC +
Sbjct: 1   MNPTQTLYSPGGNSPASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCAT 60

Query: 61  ---EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKN--GVLIYLDMLKSD-VRPD 114
                 D+ YA K+F ++P+ +   WNT+I+G+S  D  K    + ++ +M+  + + P+
Sbjct: 61  SDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPN 120

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC----------- 163
            +TFP +LK   +   ++ GK++H   LK+GF    FV + L+  Y +C           
Sbjct: 121 RFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFY 180

Query: 164 ----------------------------------GEVDMARGIFDVSYKDDVVTWNAMFS 189
                                             G+   AR +FD   +  VV+WN M S
Sbjct: 181 KNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMIS 240

Query: 190 GYKRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           GY +   F +  ++F EM++ + + P  VT+V VL A ++L  L++G+  H Y ++  I 
Sbjct: 241 GYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIR 300

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            + +L +AL DMY+ CG +  A+ +F  +  ++VI+W+A++ G+   GQ           
Sbjct: 301 IDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAG--------- 351

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                 +A+  F +M+ + +RP +   +++LTAC++ G +E G
Sbjct: 352 ----------------------DAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEG 388



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 142/293 (48%), Gaps = 10/293 (3%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFL 121
           GD K A  +F K+ + SV  WNTMI GYS+    K+ V ++ +M K  D+RP+  T   +
Sbjct: 215 GDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSV 274

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L   +R  ++E G+ LH +    G      + +ALI  Y  CG ++ A  +F+   +++V
Sbjct: 275 LPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENV 334

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-HR 240
           +TW+AM +G+    Q  +    F +M + GV P+ V  + +L+AC+    ++ G+R   +
Sbjct: 335 ITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQ 394

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVTGYINRGQV 298
            V    + P +     + D+    G +  A E   N  IK  DVI W A++        V
Sbjct: 395 MVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVI-WKALLGACRMHRNV 453

Query: 299 DMARQ----YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           +M ++      D +P  D   + A+ + Y     + E   +   M+  +IR D
Sbjct: 454 EMGKRVANILMDMVPH-DSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKD 505


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/688 (35%), Positives = 380/688 (55%), Gaps = 32/688 (4%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            +Q+H+ T KLG  +N  ++  L+    ++  D++ A   F +    +V LWN M+  Y  
Sbjct: 409  QQLHAYTTKLGFASNNKIEGALLNLY-AKCADIETALDYFLETEVENVVLWNVMLVAYGL 467

Query: 93   IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            +D  +N   I+  M   ++ P+ YT+P +LK   R   +E G+++H  ++K  F  + +V
Sbjct: 468  LDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYV 527

Query: 153  QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             + LI  Y   G++D A  I       DVV+W  M +GY +    D+    F +M  +G+
Sbjct: 528  CSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI 587

Query: 213  LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
                V +   +SACA L+ L  G++ H          +L  +NAL  +Y+ CG++  +  
Sbjct: 588  RSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYL 647

Query: 273  IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
             F   +  D I+W A+V+G+   G  +                               EA
Sbjct: 648  AFEQTEAGDNIAWNALVSGFQQSGNNE-------------------------------EA 676

Query: 333  LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
            L +F  M    I  + FT  S + A +    ++ G+ V   I K    ++  V NALI M
Sbjct: 677  LRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISM 736

Query: 393  YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
            Y KCG +  A++ F E+  K++ +W A+I   + +G G ++LD F QM+ +++ P+ VT 
Sbjct: 737  YAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTL 796

Query: 453  VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
            VGVLSAC+H G+VD+G  YF  M  ++G+ P   HY C+VD+L RAG L+ A E I+ MP
Sbjct: 797  VGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMP 856

Query: 513  MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            +KP+++VW  LL AC VH++ E+ E AA  +LEL+P++ A YVLL N+YA   +WD    
Sbjct: 857  IKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDL 916

Query: 573  LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
             RQ + ++G+KK PG S IE+   +H F  GD++HP   EI+    ++T     +GY+ D
Sbjct: 917  TRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQD 976

Query: 633  ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
               +  ++  E K+  ++ HSEKLA++FGL+S    V I ++KNLR+C DCH   K VS 
Sbjct: 977  CFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSK 1036

Query: 693  VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            V +RE+IVRD  RFHHF+ G+CSCKDYW
Sbjct: 1037 VSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 145/505 (28%), Positives = 228/505 (45%), Gaps = 34/505 (6%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           ++QIH++ +  GL  +  V N L+    S  G +  A +VF  +       W  MI G S
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLY-SRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 264

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           + +     + ++ DM    + P  Y F  +L    +  ++E G++LH  VLK GF S  +
Sbjct: 265 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 324

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V NAL+S Y   G +  A  IF    + D VT+N + +G  +    ++  +LF  M   G
Sbjct: 325 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 384

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           + P S T+  ++ AC+    L  G++ H Y  +     N  +E AL ++YA C ++  AL
Sbjct: 385 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 444

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           + F   + ++V                               VLW  M+  Y  ++  R 
Sbjct: 445 DYFLETEVENV-------------------------------VLWNVMLVAYGLLDDLRN 473

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           +  +FR+MQ   I P+++T  SIL  C  LG LELGE + + I K   + + +V + LID
Sbjct: 474 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY K G ++ A  +      KD  +WT MI G       DK+L  F QML   I  DEV 
Sbjct: 534 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 593

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
               +SAC     + EG++  A   +  G   +      +V L  R G + E+    +  
Sbjct: 594 LTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 652

Query: 512 PMKPNSIVWGALLGACRVHRDAEMA 536
               N I W AL+   +   + E A
Sbjct: 653 EAGDN-IAWNALVSGFQQSGNNEEA 676



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 134/550 (24%), Positives = 260/550 (47%), Gaps = 38/550 (6%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           + ++S  +  ES+   +Q+H   +KLG  ++  V N LV+      G++  A  +F  + 
Sbjct: 292 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYF-HLGNLISAEHIFSNMS 350

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           +     +NT+I G S+    +  + ++  M    + PD+ T   L+   + D  +  G++
Sbjct: 351 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 410

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           LH +  K GF S+  ++ AL++ Y  C +++ A   F  +  ++VV WN M   Y  +  
Sbjct: 411 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 470

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
              + ++F +M+ + ++P   T   +L  C +L DL++G++ H  + +     N  + + 
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 530

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY-FDQMPERDYVL 315
           L DMYA  G++  A +I      KDV+SWT ++ GY          QY FD         
Sbjct: 531 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT---------QYNFDD-------- 573

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
                          +ALT FR+M    IR DE  + + ++ACA L AL+ G+ +     
Sbjct: 574 ---------------KALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 618

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
            +   +D+   NAL+ +Y +CG +E++   F +    D   W A++ G   +G+ +++L 
Sbjct: 619 VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 678

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +F +M R  I  +  T+   + A + T  + +G++  A +T + G +        ++ + 
Sbjct: 679 VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVIT-KTGYDSETEVCNALISMY 737

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
            + G +++A +    +  K N + W A++ A   H     A  +  Q++    +    +V
Sbjct: 738 AKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKHGFGSEALDSFDQMIH--SNVRPNHV 794

Query: 556 LLCNIYAACN 565
            L  + +AC+
Sbjct: 795 TLVGVLSACS 804



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 145/568 (25%), Positives = 262/568 (46%), Gaps = 37/568 (6%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+  T +  L   ++T  S+ + +++HSQ +KLGL +N  +  KL  F    KGD+  A 
Sbjct: 82  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLF-KGDLYGAF 140

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-D 128
           KVF ++P  ++  WN MIK  +  +       +++ M+  +V P+  TF  +L+      
Sbjct: 141 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 200

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
           +A +  +++H  +L  G   S  V N LI  Y   G VD+AR +FD     D  +W AM 
Sbjct: 201 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 260

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           SG  + +   E  +LF +M   G++PT      VLSAC K++ L++G++ H  V +    
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 320

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            +  + NAL  +Y   G +  A  IF N+  +D +++  ++ G    G  +         
Sbjct: 321 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE--------- 371

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                                 +A+ LF+ M    + PD  T+ S++ AC+  G L  G+
Sbjct: 372 ----------------------KAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 409

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            +  Y  K    ++  +  AL+++Y KC D+E A   F E   ++   W  M+V   +  
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
               S  +F QM    I+P++ TY  +L  C   G ++ G +  + + I+   + N    
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI-IKTNFQLNAYVC 528

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
             ++D+  + G L+ A +++     K + + W  ++     +   + A    +Q+L+   
Sbjct: 529 SVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI 587

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQM 576
            ++ V   L N  +AC      +E +Q+
Sbjct: 588 RSDEVG--LTNAVSACAGLQALKEGQQI 613



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 159/375 (42%), Gaps = 43/375 (11%)

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK-DLDVGKRAHRYVKECKIVPNLIL 253
           + F E R     +E +G+ P   T+  +L  C K    LD G++ H  + +  +  N  L
Sbjct: 65  ESFQEKR--IDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCL 122

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
              L D Y   G++  A ++F                               D+MPER  
Sbjct: 123 SEKLFDFYLFKGDLYGAFKVF-------------------------------DEMPERTI 151

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG-ALELGEWVKT 372
             W  MI      N   E   LF  M + N+ P+E T   +L AC     A ++ E +  
Sbjct: 152 FTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHA 211

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            I    +++   V N LID+Y + G V+ A+RVF  +  KD  +W AMI GL+ N    +
Sbjct: 212 RILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAE 271

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           ++ +F  M    I+P    +  VLSAC     ++ G E    + ++ G   +      +V
Sbjct: 272 AIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLVLKLGFSSDTYVCNALV 330

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAAKQILE-LDPDN 550
            L    G+L  A  +  NM  + +++ +  L+ G  +     +  E+  +  L+ L+PD+
Sbjct: 331 SLYFHLGNLISAEHIFSNMSQR-DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 389

Query: 551 EAVYVLLCNIYAACN 565
                 L ++  AC+
Sbjct: 390 NT----LASLVVACS 400



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 14  TQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           + E  L + +  C  +  LK   QIH+Q    G  ++   QN LVT   S  G ++ +  
Sbjct: 589 SDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL-YSRCGKIEESYL 647

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
            F +        WN ++ G+ +  +++  + +++ M +  +  +N+TF   +K  +    
Sbjct: 648 AFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETAN 707

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV-DMARGIFDVSYKDDVVTWNAMFS 189
           ++ GK++H  + K G+DS   V NALIS Y  CG + D  +   +VS K++ V+WNA+ +
Sbjct: 708 MKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE-VSWNAIIN 766

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
            Y +     E    F +M    V P  VT+V VLSAC+ +  +D G
Sbjct: 767 AYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 812


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/726 (34%), Positives = 406/726 (55%), Gaps = 51/726 (7%)

Query: 34   QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
            +IH   IK G   +  ++  L+ F     G ++ A +VF ++P P   LWN  I    + 
Sbjct: 695  EIHGCLIKRGFDLDVYLRCALMNFYGRCWG-LEKANQVFHEMPNPEALLWNEAIILNLQS 753

Query: 94   DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
            +  + GV ++  M  S ++ +  T   +L+   +  A+   K++H +V +FG DS V + 
Sbjct: 754  EKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLC 813

Query: 154  NALISTYCLCGEVDMARGIFD--------------VSY---------------------K 178
            N LIS Y   G++++AR +FD               SY                     K
Sbjct: 814  NPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMK 873

Query: 179  DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
             D+VTWN + SG+      +E   +   M+ +G  P S ++  VL A ++L  L++GK  
Sbjct: 874  PDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKET 933

Query: 239  HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
            H YV       ++ +  +L DMY     +  A  +F N+KN+++ +W ++V+GY  +G  
Sbjct: 934  HGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMF 993

Query: 299  DMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            + A +  +QM +     D V W  MI GY      R+A             P+  +I  +
Sbjct: 994  EDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFM-----------PNSASITCL 1042

Query: 355  LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
            L ACA+L  L+ G+ +     +N    D+FV  ALIDMY K   ++ A +VFR +  K  
Sbjct: 1043 LRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTL 1102

Query: 415  FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
             +W  MI+G AI G G +++ +F++M +  + PD +T+  +LSAC ++G++ EG +YF  
Sbjct: 1103 ASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDS 1162

Query: 475  MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
            M   + I P   HY CMVDLLGRAG+L+EA ++I  MP+KP++ +WGALLG+CR+H++  
Sbjct: 1163 MITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLX 1222

Query: 535  MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
             AE AAK + +L+P+N A Y+L+ N+Y+  NRW++   LR+++   G++     S I++N
Sbjct: 1223 FAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQIN 1282

Query: 595  GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
              VH F + +K HP   +IY +L ++ S++K +GY+PD++ V+ ++ E +K++ +  H+E
Sbjct: 1283 QRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTE 1342

Query: 655  KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
            KLA+ +GLI    G  IR++KN R+C DCH  AK +S+V  RE+ +RD  RFHHF+ G C
Sbjct: 1343 KLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKC 1402

Query: 715  SCKDYW 720
            SC D+W
Sbjct: 1403 SCNDFW 1408



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 238/505 (47%), Gaps = 32/505 (6%)

Query: 40   IKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR-KIPRPSVCLWNTMIKGYSRIDSHKN 98
            IKL    NP    K +       GD   A  VF   +PR +   WN+ ++ +       +
Sbjct: 598  IKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPR-NYLKWNSFVEEFKSSAGSLH 656

Query: 99   GVL-IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALI 157
             VL ++ ++    V  D+  +   LK  TR + +  G E+H  ++K GFD  V+++ AL+
Sbjct: 657  IVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALM 716

Query: 158  STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
            + Y  C  ++ A  +F      + + WN       + ++  +  +LF +M+   +   + 
Sbjct: 717  NFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETA 776

Query: 218  TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
            TIV VL AC K+  L+  K+ H YV    +  ++ L N L  MY+  G++  A  +F ++
Sbjct: 777  TIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 836

Query: 278  KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY----VLWTAMIDGYLRVNRFREAL 333
            +N++  SW ++++ Y   G ++ A   F ++   D     V W  ++ G+       E L
Sbjct: 837  ENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVL 896

Query: 334  TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
             + + MQ    +P+  ++ S+L A + LG L +G+    Y+ +N    D++VG +LIDMY
Sbjct: 897  NILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMY 956

Query: 394  CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
             K   +  AQ VF  M  ++ F W +++ G +  G  + +L + +QM +  I PD VT+ 
Sbjct: 957  VKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWN 1016

Query: 454  GVLS------------------------ACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
            G++S                        AC    ++ +G+E    ++I++G   +     
Sbjct: 1017 GMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHC-LSIRNGFIEDVFVAT 1075

Query: 490  CMVDLLGRAGHLNEALEVIKNMPMK 514
             ++D+  ++  L  A +V + +  K
Sbjct: 1076 ALIDMYSKSSSLKNAHKVFRRIQNK 1100


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/705 (36%), Positives = 381/705 (54%), Gaps = 73/705 (10%)

Query: 24  ETCE-------SMHQLKQIHSQ-TIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           E CE        +  L ++HS+  I   L  +PT+  KL+    S +G+   A  +F + 
Sbjct: 39  EACEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMR-AYSAQGETSVARYIFDRS 97

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              +V  +N MI+ Y   + +   + I+  ML     PD+YTFP +LK  +    +  G 
Sbjct: 98  LEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGL 157

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  ++K G D+++F+ NAL++ Y  CG +  AR + D     DVV+WN+M +GY +  
Sbjct: 158 QVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSG 217

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           QFD+                       L  C ++  L++   A        +V    LEN
Sbjct: 218 QFDDA----------------------LEICKEMDSLNLNHDAGTMASLSPVVCYTSLEN 255

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
                      + +   +F  +  K++ISW  ++  Y+N           + MP      
Sbjct: 256 -----------VQYIHNMFERMTKKNLISWNVMIAIYVN-----------NSMPN----- 288

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
                          EA++LF +M+   ++PD  TI S+L AC +L AL LG  +  YI+
Sbjct: 289 ---------------EAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIE 333

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
           K  ++ ++ + NAL+DMY KCG +E+A+ VF +M  +D  +WT+M+     +G G  ++ 
Sbjct: 334 KGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVA 393

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +F++ML +   PD + +V VLSAC+HTG++D+GR YF  MT Q+GI P   H+ CMVDL 
Sbjct: 394 LFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLF 453

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
           GRAG + EA   IK MPM+PN  VWGALL ACRVH   ++  +AA  + +L P     YV
Sbjct: 454 GRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYV 513

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
           LL NIYA    W +   +R  +   GIKK PG S +E+NG VH F+AGD+ HPQ K IY 
Sbjct: 514 LLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYG 573

Query: 616 KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
           +LD +   +K +GY+P       DV  EDKE  +  HSEKLA+ F ++++  G  IRI K
Sbjct: 574 ELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITK 633

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH   KL+S +  R +IVRD  RFHHF +G CSC DYW
Sbjct: 634 NLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 10/246 (4%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           +E C+ M  L   H       L  +P V       C +   +++Y   +F ++ + ++  
Sbjct: 223 LEICKEMDSLNLNHDAGTMASL--SPVV-------CYTSLENVQYIHNMFERMTKKNLIS 273

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN MI  Y         V ++L M +  ++PD  T   LL       A+  G+ LH ++ 
Sbjct: 274 WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIE 333

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K     ++ ++NAL+  Y  CG ++ AR +FD     DVV+W +M S Y R  Q  +   
Sbjct: 334 KGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVA 393

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLILENALTDMY 261
           LF +M   G  P S+  V VLSAC+    LD G+   R + E   IVP +     + D++
Sbjct: 394 LFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLF 453

Query: 262 AACGEM 267
              GE+
Sbjct: 454 GRAGEV 459


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/705 (36%), Positives = 381/705 (54%), Gaps = 73/705 (10%)

Query: 24  ETCE-------SMHQLKQIHSQ-TIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           E CE        +  L ++HS+  I   L  +PT+  KL+    S +G+   A  +F + 
Sbjct: 39  EACEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMR-AYSAQGETSVARYIFDRS 97

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              +V  +N MI+ Y   + +   + I+  ML     PD+YTFP +LK  +    +  G 
Sbjct: 98  LEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGL 157

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  ++K G D+++F+ NAL++ Y  CG +  AR + D     DVV+WN+M +GY +  
Sbjct: 158 QVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSG 217

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           QFD+                       L  C ++  L++   A        +V    LEN
Sbjct: 218 QFDDA----------------------LEICKEMDSLNLNHDAGTMASLSPVVCYTSLEN 255

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
                      + +   +F  +  K++ISW  ++  Y+N           + MP      
Sbjct: 256 -----------VQYIHNMFERMTKKNLISWNVMIAIYVN-----------NSMPN----- 288

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
                          EA++LF +M+   ++PD  TI S+L AC +L AL LG  +  YI+
Sbjct: 289 ---------------EAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIE 333

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
           K  ++ ++ + NAL+DMY KCG +E+A+ VF +M  +D  +WT+M+     +G G  ++ 
Sbjct: 334 KGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVA 393

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +F++ML +   PD + +V VLSAC+HTG++D+GR YF  MT Q+GI P   H+ CMVDL 
Sbjct: 394 LFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLF 453

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
           GRAG + EA   IK MPM+PN  VWGALL ACRVH   ++  +AA  + +L P     YV
Sbjct: 454 GRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYV 513

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
           LL NIYA    W +   +R  +   GIKK PG S +E+NG VH F+AGD+ HPQ K IY 
Sbjct: 514 LLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYG 573

Query: 616 KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
           +LD +   +K +GY+P       DV  EDKE  +  HSEKLA+ F ++++  G  IRI K
Sbjct: 574 ELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITK 633

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH   KL+S +  R +IVRD  RFHHF +G CSC DYW
Sbjct: 634 NLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 10/246 (4%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           +E C+ M  L   H       L  +P V       C +   +++Y   +F ++ + ++  
Sbjct: 223 LEICKEMDSLNLNHDAGTMASL--SPVV-------CYTSLENVQYIHNMFERMTKKNLIS 273

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN MI  Y         V ++L M +  ++PD  T   LL       A+  G+ LH ++ 
Sbjct: 274 WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIE 333

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K     ++ ++NAL+  Y  CG ++ AR +FD     DVV+W +M S Y R  Q  +   
Sbjct: 334 KGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVA 393

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLILENALTDMY 261
           LF +M   G  P S+  V VLSAC+    LD G+   R + E   IVP +     + D++
Sbjct: 394 LFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLF 453

Query: 262 AACGEM 267
              GE+
Sbjct: 454 GRAGEV 459


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/731 (34%), Positives = 406/731 (55%), Gaps = 57/731 (7%)

Query: 10  PSTLTQETPLISPIETC------ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           PS+ T    L+S +  C      E +   KQ+H+  ++ G L N  + N LV     + G
Sbjct: 197 PSSFT----LVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMY-GKLG 250

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            +  +  +        +  WNT++    + +     +    +M+   V PD +T   +L 
Sbjct: 251 KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLP 310

Query: 124 GFTRDIAVEFGKELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
             +    +  GKELH + LK G  D + FV +AL+  YC C +V   R +FD  +   + 
Sbjct: 311 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIG 370

Query: 183 TWNAMFSGYKRVKQFDETRKLF-GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
            WNAM +GY + +   E   LF G  E  G+L  S T+  V+ AC +       +  H +
Sbjct: 371 LWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF 430

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           V +  +  +  ++N L DMY+  G                               ++D+A
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLG-------------------------------KIDIA 459

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT-----------SNIRPDEFT 350
            + F +M +RD V W  MI GY+      +AL L  +MQ             +++P+  T
Sbjct: 460 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 519

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           +++IL +CA L AL  G+ +  Y  KN +  D+ VG+AL+DMY KCG ++ +++VF ++ 
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
           +K+  TW  +I+   ++G+G +++D+   M+   + P+EVT++ V +AC+H+GMVDEG  
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLGACRV 529
            F  M   +G+EP+  HY C+VDLLGRAG + EA +++  MP   N    W +LLGA R+
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699

Query: 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS 589
           H + E+ E+AA+ +++L+P+  + YVLL NIY++   WD   E+R+ + ++G++K PGCS
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759

Query: 590 MIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAV 649
            IE    VH+FVAGD SHPQ++++   L+ +   ++  GY+PD S V  +V E++KE  +
Sbjct: 760 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILL 819

Query: 650 YQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHF 709
             HSEKLA+AFG++++ PG  IR+ KNLR+C DCH   K +S + DRE+I+RD  RFH F
Sbjct: 820 CGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRF 879

Query: 710 KHGSCSCKDYW 720
           K+G+CSC DYW
Sbjct: 880 KNGTCSCGDYW 890



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 221/449 (49%), Gaps = 42/449 (9%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           W  +++   R +  +  VL Y+DM+   ++PDNY FP LLK       +E GK++H HV 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 143 KFGFD-SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           KFG+   SV V N L++ Y  CG+      +FD   + + V+WN++ S     ++++   
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKL---KDLDVGKRAHRY-VKECKIVPNLILENAL 257
           + F  M  + V P+S T+V V++AC+ L   + L +GK+ H Y +++ ++  N  + N L
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL--NSFIINTL 242

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
             MY   G++  +  + G+   +D+++W  +++      Q+                   
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQL------------------- 283

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                        EAL   REM    + PDEFTI S+L AC++L  L  G+ +  Y  KN
Sbjct: 284 ------------LEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331

Query: 378 -KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
             +  + FVG+AL+DMYC C  V   +RVF  M  +    W AMI G + N H  ++L +
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 391

Query: 437 FSQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           F  M   A ++ +  T  GV+ AC  +G     +E      ++ G++ +      ++D+ 
Sbjct: 392 FIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVKRGLDRDRFVQNTLMDMY 450

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALL 524
            R G ++ A+ +   M  + + + W  ++
Sbjct: 451 SRLGKIDIAMRIFGKMEDR-DLVTWNTMI 478



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 151/565 (26%), Positives = 260/565 (46%), Gaps = 56/565 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           L+  +   + M   KQIH+   K G  + + TV N LV     + GD     KVF +I  
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLY-RKCGDFGAVYKVFDRISE 161

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE---FG 134
            +   WN++I      +  +  +  +  ML  +V P ++T   ++   +     E    G
Sbjct: 162 RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMG 221

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K++H + L+ G + + F+ N L++ Y   G++  ++ +       D+VTWN + S   + 
Sbjct: 222 KQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 280

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECKIVPNLIL 253
           +Q  E  +   EM  +GV P   TI  VL AC+ L+ L  GK  H Y +K   +  N  +
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            +AL DMY  C               K V+S                 R+ FD M +R  
Sbjct: 341 GSALVDMYCNC---------------KQVLS----------------GRRVFDGMFDRKI 369

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKT 372
            LW AMI GY +    +EAL LF  M+ S  +  +  T+  ++ AC   GA    E +  
Sbjct: 370 GLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHG 429

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           ++ K  +  D FV N L+DMY + G ++ A R+F +M  +D  TW  MI G   + H + 
Sbjct: 430 FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 489

Query: 433 SLDMFSQML-----------RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
           +L +  +M            R S+ P+ +T + +L +C     + +G+E  A   I++ +
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA-YAIKNNL 548

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAA 540
             + A    +VD+  + G L  + +V   +P K N I W  ++ A  +H + + A ++  
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGNGQEAIDLLR 607

Query: 541 KQILELDPDNEAVYVLLCNIYAACN 565
             +++    NE  ++   +++AAC+
Sbjct: 608 MMMVQGVKPNEVTFI---SVFAACS 629



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 132/267 (49%), Gaps = 13/267 (4%)

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           W  ++   +R N  REA+  + +M    I+PD +   ++L A A+L  +ELG+ +  ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 376 KNKVKND-IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           K     D + V N L+++Y KCGD     +VF  +  +++ +W ++I  L      + +L
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE---GREYFADMTIQHGIEPNEAHYGCM 491
           + F  ML  ++ P   T V V++AC++  M +    G++  A   ++ G E N      +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA-YGLRKG-ELNSFIINTL 242

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA-CRVHRDAEMAEMAAKQILE-LDPD 549
           V + G+ G L  +  ++ +   + + + W  +L + C+  +  E  E   + +LE ++PD
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQM 576
                  + ++  AC+  +  R  +++
Sbjct: 302 E----FTISSVLPACSHLEMLRTGKEL 324


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/731 (34%), Positives = 406/731 (55%), Gaps = 57/731 (7%)

Query: 10  PSTLTQETPLISPIETC------ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           PS+ T    L+S +  C      E +   KQ+H+  ++ G L N  + N LV     + G
Sbjct: 197 PSSFT----LVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMY-GKLG 250

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            +  +  +        +  WNT++    + +     +    +M+   V PD +T   +L 
Sbjct: 251 KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLP 310

Query: 124 GFTRDIAVEFGKELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
             +    +  GKELH + LK G  D + FV +AL+  YC C +V   R +FD  +   + 
Sbjct: 311 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIG 370

Query: 183 TWNAMFSGYKRVKQFDETRKLF-GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
            WNAM +GY + +   E   LF G  E  G+L  S T+  V+ AC +       +  H +
Sbjct: 371 LWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF 430

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           V +  +  +  ++N L DMY+  G                               ++D+A
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLG-------------------------------KIDIA 459

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT-----------SNIRPDEFT 350
            + F +M +RD V W  MI GY+      +AL L  +MQ             +++P+  T
Sbjct: 460 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 519

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           +++IL +CA L AL  G+ +  Y  KN +  D+ VG+AL+DMY KCG ++ +++VF ++ 
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
           +K+  TW  +I+   ++G+G +++D+   M+   + P+EVT++ V +AC+H+GMVDEG  
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLGACRV 529
            F  M   +G+EP+  HY C+VDLLGRAG + EA +++  MP   N    W +LLGA R+
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699

Query: 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS 589
           H + E+ E+AA+ +++L+P+  + YVLL NIY++   WD   E+R+ + ++G++K PGCS
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759

Query: 590 MIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAV 649
            IE    VH+FVAGD SHPQ++++   L+ +   ++  GY+PD S V  +V E++KE  +
Sbjct: 760 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILL 819

Query: 650 YQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHF 709
             HSEKLA+AFG++++ PG  IR+ KNLR+C DCH   K +S + DRE+I+RD  RFH F
Sbjct: 820 CGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRF 879

Query: 710 KHGSCSCKDYW 720
           K+G+CSC DYW
Sbjct: 880 KNGTCSCGDYW 890



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 221/449 (49%), Gaps = 42/449 (9%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           W  +++   R +  +  VL Y+DM+   ++PDNY FP LLK       +E GK++H HV 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 143 KFGFD-SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           KFG+   SV V N L++ Y  CG+      +FD   + + V+WN++ S     ++++   
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKL---KDLDVGKRAHRY-VKECKIVPNLILENAL 257
           + F  M  + V P+S T+V V++AC+ L   + L +GK+ H Y +++ ++  N  + N L
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL--NSFIINTL 242

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
             MY   G++  +  + G+   +D+++W  +++      Q+                   
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQL------------------- 283

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                        EAL   REM    + PDEFTI S+L AC++L  L  G+ +  Y  KN
Sbjct: 284 ------------LEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331

Query: 378 -KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
             +  + FVG+AL+DMYC C  V   +RVF  M  +    W AMI G + N H  ++L +
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 391

Query: 437 FSQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           F  M   A ++ +  T  GV+ AC  +G     +E      ++ G++ +      ++D+ 
Sbjct: 392 FIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVKRGLDRDRFVQNTLMDMY 450

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALL 524
            R G ++ A+ +   M  + + + W  ++
Sbjct: 451 SRLGKIDIAMRIFGKMEDR-DLVTWNTMI 478



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 151/565 (26%), Positives = 260/565 (46%), Gaps = 56/565 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           L+  +   + M   KQIH+   K G  + + TV N LV     + GD     KVF +I  
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLY-RKCGDFGAVYKVFDRISE 161

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE---FG 134
            +   WN++I      +  +  +  +  ML  +V P ++T   ++   +     E    G
Sbjct: 162 RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMG 221

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K++H + L+ G + + F+ N L++ Y   G++  ++ +       D+VTWN + S   + 
Sbjct: 222 KQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 280

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECKIVPNLIL 253
           +Q  E  +   EM  +GV P   TI  VL AC+ L+ L  GK  H Y +K   +  N  +
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            +AL DMY  C               K V+S                 R+ FD M +R  
Sbjct: 341 GSALVDMYCNC---------------KQVLS----------------GRRVFDGMFDRKI 369

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKT 372
            LW AMI GY +    +EAL LF  M+ S  +  +  T+  ++ AC   GA    E +  
Sbjct: 370 GLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHG 429

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           ++ K  +  D FV N L+DMY + G ++ A R+F +M  +D  TW  MI G   + H + 
Sbjct: 430 FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 489

Query: 433 SLDMFSQML-----------RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
           +L +  +M            R S+ P+ +T + +L +C     + +G+E  A   I++ +
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA-YAIKNNL 548

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAA 540
             + A    +VD+  + G L  + +V   +P K N I W  ++ A  +H + + A ++  
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGNGQEAIDLLR 607

Query: 541 KQILELDPDNEAVYVLLCNIYAACN 565
             +++    NE  ++   +++AAC+
Sbjct: 608 MMMVQGVKPNEVTFI---SVFAACS 629



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 132/267 (49%), Gaps = 13/267 (4%)

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           W  ++   +R N  REA+  + +M    I+PD +   ++L A A+L  +ELG+ +  ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 376 KNKVKND-IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           K     D + V N L+++Y KCGD     +VF  +  +++ +W ++I  L      + +L
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE---GREYFADMTIQHGIEPNEAHYGCM 491
           + F  ML  ++ P   T V V++AC++  M +    G++  A   ++ G E N      +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA-YGLRKG-ELNSFIINTL 242

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA-CRVHRDAEMAEMAAKQILE-LDPD 549
           V + G+ G L  +  ++ +   + + + W  +L + C+  +  E  E   + +LE ++PD
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQM 576
                  + ++  AC+  +  R  +++
Sbjct: 302 E----FTISSVLPACSHLEMLRTGKEL 324


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/689 (37%), Positives = 379/689 (55%), Gaps = 67/689 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K +H+  +  G + +  +  +LV    +  GD+  +   F +IP+  V  WN+MI  Y  
Sbjct: 36  KCLHALLVVAGKVQSIFISTRLVNLY-ANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 94

Query: 93  IDSHKNGV-LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
                  +   Y  +L S++RPD YTFP +LK     +    G+++HC   K GF  +VF
Sbjct: 95  NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVF 151

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V  +LI  Y   G   +AR +FD     D+ +WNAM SG  +     +   +  EM  +G
Sbjct: 152 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 211

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           +    VT+V +L                                   DMYA  G +  A 
Sbjct: 212 IKMNFVTVVSILP-------------------------------VFVDMYAKLGLLDSAH 240

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           ++F  I  KDVISW  ++TGY   G    A + +  M E                     
Sbjct: 241 KVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEE--------------------- 279

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
                       I P++ T VSIL A A++GAL+ G  +   + K  +  D+FV   LID
Sbjct: 280 ---------CKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLID 330

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           +Y KCG +  A  +F ++ ++   TW A+I    I+GH +K+L +F +ML   + PD VT
Sbjct: 331 VYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT 390

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +V +LSAC+H+G V+EG+  F  M  ++GI+P+  HYGCMVDLLGRAG+L  A + IK+M
Sbjct: 391 FVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDM 449

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P++P++ +WGALLGACR+H + E+ + A+ ++ E+D  N   YVLL NIYA   +W+   
Sbjct: 450 PLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVD 509

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
           ++R +  +RG+KKTPG S IE+N  V  F  G++SHP+ KEIY +L  +T+ +K +GY+P
Sbjct: 510 KVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIP 569

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           D S V  DV E++KE  +  HSE+LA+AFG+IS+ P   IRI KNLR+C DCH   K +S
Sbjct: 570 DYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFIS 629

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +  RE++VRD  RFHHFK G CSC DYW
Sbjct: 630 RITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 3/296 (1%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           LI      +++  L ++  + IK+  +T  ++    V    ++ G +  A KVF  IP  
Sbjct: 191 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMY-AKLGLLDSAHKVFEIIPVK 249

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            V  WNT+I GY++       + +Y  M +  ++ P+  T+  +L  +    A++ G ++
Sbjct: 250 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKI 309

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H  V+K      VFV   LI  Y  CG +  A  +F    ++  VTWNA+ S +      
Sbjct: 310 HGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHA 369

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           ++T KLFGEM  +GV P  VT V +LSAC+    ++ GK   R ++E  I P+L     +
Sbjct: 370 EKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCM 429

Query: 258 TDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
            D+    G +  A +   ++    D   W A++      G +++ +   D++ E D
Sbjct: 430 VDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVD 485


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/692 (37%), Positives = 382/692 (55%), Gaps = 47/692 (6%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIK--GYSR-----------------------ID 94
           +  G +  A   FR IPRP    +NT++   G S                        I 
Sbjct: 149 AANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMIS 208

Query: 95  SHKNGVLIYLDMLKSDVRP--DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS---- 148
           SH N  L+ L     D+ P  D  ++  +L  + R+  ++  +EL        FDS    
Sbjct: 209 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEAREL--------FDSRTEW 260

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
                NAL++ Y    +++ A+ +F+   + DVV+WN M SGY R     E R+LF    
Sbjct: 261 DAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAP 320

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
            + V     T   ++S  A+   L+  KR    V +     N +  NA+   Y     M 
Sbjct: 321 IRDVF----TWTAIVSGYAQNGMLEEAKR----VFDAMPDKNAVSWNAMMAAYVQRRMME 372

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A E+F  +  ++V SW  ++TGY   G +D AR  F  MP++D V W AM+  Y ++  
Sbjct: 373 EAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGF 432

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             E L LF+EM       +      +L+ CA++ ALE G  + + + K       FVGNA
Sbjct: 433 SEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNA 492

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           L+ MY KCG +E+A   F EM  +D  +W  MI G A +G G ++L++F  M + S  PD
Sbjct: 493 LLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPD 552

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
           ++T VGVL+AC+H+G+V++G  YF  M    G+     HY CM+DLLGRAG L+EA+ ++
Sbjct: 553 DITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLM 612

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
           K+MP +P+S +WGALLGA R+HR++E+   AA++I EL+P+N  +YVLL NIYA+  +W 
Sbjct: 613 KDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWR 672

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
           +  ++R ++ +RG+KK PG S IE+   VH F  GD  HP+ ++IY  L+++   +K  G
Sbjct: 673 DVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAG 732

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           Y+     V  DV EE+KE  +  HSEKLA+A+G++   PG  IR++KNLR+C DCH   K
Sbjct: 733 YVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFK 792

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +S +  R +I+RD  RFHHF+ GSCSC DYW
Sbjct: 793 CISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 171/383 (44%), Gaps = 63/383 (16%)

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
           D  V  +N  I+ +   G V  A  +F    +    T+N M +GY    +  +    F  
Sbjct: 104 DMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRS 163

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           + R    P S +   +L A                         L + ++L D+ A    
Sbjct: 164 IPR----PDSFSYNTLLHA-------------------------LGVSSSLADVRA---- 190

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
                 +F  +  KD +S+  +++ + N G V +AR YFD  PE+D V W  M+  Y+R 
Sbjct: 191 ------LFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 244

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV-KNDIFV 385
            R +EA    RE+  S    D  +  +++        +E  E  K +   NK+ + D+  
Sbjct: 245 GRIQEA----RELFDSRTEWDAISWNALMAGYVQRSQIE--EAQKMF---NKMPQRDVVS 295

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            N ++  Y + GD+ +A+R+F     +D FTWTA++ G A NG  +++  +F  M     
Sbjct: 296 WNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM----- 350

Query: 446 IPDE--VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            PD+  V++  +++A     M++E +E F  M  +     N A +  M+    +AG L+E
Sbjct: 351 -PDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR-----NVASWNTMLTGYAQAGMLDE 404

Query: 504 ALEVIKNMPMKPNSIVWGALLGA 526
           A  +   MP K +++ W A+L A
Sbjct: 405 ARAIFGMMPQK-DAVSWAAMLAA 426



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 20/224 (8%)

Query: 23  IETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVT--FCCSEKGDMKYACKVFRKIPR 77
           + TC  +  L+   Q+HS+ IK G      V N L+   F C   G M+ A   F ++  
Sbjct: 459 LSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKC---GSMEEAHSAFEEMEE 515

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
             V  WNTMI GY+R    K  + ++  M K+  +PD+ T   +L   +    VE G   
Sbjct: 516 RDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISY 575

Query: 138 HCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVK 195
              + + FG  +       +I      G +D A  +  D+ ++ D   W A+  G  R+ 
Sbjct: 576 FYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALL-GASRIH 634

Query: 196 QFDE-----TRKLFG-EMERKGVLPTSVTIVLVLSACAKLKDLD 233
           +  E       K+F  E E  G+    V +  + ++  K +D+D
Sbjct: 635 RNSELGRNAAEKIFELEPENAGMY---VLLSNIYASSGKWRDVD 675


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/590 (40%), Positives = 344/590 (58%), Gaps = 35/590 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCL---CGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           K++  + +K    S + V   LI+   L      +D A  +FD     D++ +N M  GY
Sbjct: 46  KQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGY 105

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            R         LFGE+   G+LP   T   +L ACA  K L  G   H +  +  +  N+
Sbjct: 106 ARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNI 165

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            +   L +MYA C +M                               + AR  FD+M + 
Sbjct: 166 YICPTLINMYAECNDM-------------------------------NAARGVFDEMEQP 194

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
             V + A+I GY R ++  EAL+LFRE+Q SNI P + T++S++ +CA LGAL+LG+W+ 
Sbjct: 195 CIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIH 254

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            Y+ K      + V  ALIDM+ KCG +  A  +F  M  +D   W+AMIV  A +G G 
Sbjct: 255 EYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGL 314

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           K++ MF +M R  + PDE+T++G+L AC+H G+V++GR YF  M+  +GI P   HYGCM
Sbjct: 315 KAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCM 374

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAGHL+EA   +  + +K   I+W  LL AC  H + EMA+   ++I ELD  + 
Sbjct: 375 VDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHG 434

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YV+L N+YA   RW++   LR+++ DRG+ K PGCS +E+N VVHEF +GD  H  + 
Sbjct: 435 GDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSV 494

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVF-LDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
           E+   LDE+  ++K VGY+PD S V+  D+ EE KE  +  HSEKLAMAFGL+++ PG T
Sbjct: 495 ELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTT 554

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IR+ KNLR+C DCH  AKL+S ++ R++++RD  RFH F+ G CSC D+W
Sbjct: 555 IRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 220/434 (50%), Gaps = 43/434 (9%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC--SE 61
           +S+ S    +  +   +S +  C S+++LKQI + TIK  L ++ +V  KL+ FC     
Sbjct: 17  SSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPT 76

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
              M +A  +F +I    + L+N M +GY+R +S      ++ ++L S + PD+YTF  L
Sbjct: 77  TSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSL 136

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           LK      A+  G  LHC  +K G + ++++   LI+ Y  C +++ ARG+FD   +  +
Sbjct: 137 LKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCI 196

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           V++NA+ +GY R  Q +E   LF E++   + PT VT++ V+ +CA L  LD+GK  H Y
Sbjct: 197 VSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEY 256

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           VK+      + +  AL DM+A CG +  A+ IF  ++ +D  +W+A++  +   G     
Sbjct: 257 VKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHG----- 311

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                              DG        +A+++F EM+   +RPDE T + +L AC++ 
Sbjct: 312 -------------------DGL-------KAISMFEEMKREGVRPDEITFLGLLYACSHA 345

Query: 362 GALELG-----EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKF 415
           G +E G        KTY     +K+       ++D+  + G +++A     ++ ++    
Sbjct: 346 GLVEQGRGYFYSMSKTYGITPGIKHY----GCMVDLLGRAGHLDEAYNFVDKLEIKATPI 401

Query: 416 TWTAMIVGLAINGH 429
            W  ++   + +G+
Sbjct: 402 LWRTLLSACSTHGN 415


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/551 (42%), Positives = 342/551 (62%), Gaps = 2/551 (0%)

Query: 44  LLTNP-TVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLI 102
           L T+P T+ N + ++  S    +K A  +F++I RP++  WN MI+G+S  D     + +
Sbjct: 6   LRTDPSTIYNLIKSYALSPSTILK-AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRM 64

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           Y  M +  +  +N T+ FL K   R   V  G  +H  VLK GF+S ++V NALI+ Y  
Sbjct: 65  YNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGS 124

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
           CG + +A+ +FD   + D+V+WN++  GY + K+F E   +F  M   GV   +VT+V V
Sbjct: 125 CGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKV 184

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           + AC  L +  V      Y++E  +  ++ L N L DMY   G +  A  +F  ++ +++
Sbjct: 185 VLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNL 244

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +SW A++ GY   G +  AR+ FD M +RD + WT MI  Y +  +F EAL LF+EM  S
Sbjct: 245 VSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMES 304

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
            ++PDE T+ S+L+ACA+ G+L++GE    YI K  VK DI+VGNALIDMYCKCG VEKA
Sbjct: 305 KVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKA 364

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
             VF+EM +KD  +WT++I GLA+NG  D +LD FS+MLR  + P    +VG+L AC H 
Sbjct: 365 LEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHA 424

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G+VD+G EYF  M   +G++P   HYGC+VDLL R+G+L  A E IK MP+ P+ ++W  
Sbjct: 425 GLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRI 484

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL A +VH +  +AE+A K++LELDP N   YVL  N YA  NRW++  ++R+++    +
Sbjct: 485 LLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNV 544

Query: 583 KKTPGCSMIEM 593
           +K  G S IEM
Sbjct: 545 QKPSGSSCIEM 555



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 197/428 (46%), Gaps = 65/428 (15%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IH++ +KLG  ++  V N L+    S  G +  A KVF ++P   +  WN+++ GY +  
Sbjct: 99  IHARVLKLGFESHLYVSNALINMYGS-CGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCK 157

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-------DIAVE--------------- 132
             +  + ++  M  + V+ D  T   ++   T        D  V+               
Sbjct: 158 RFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGN 217

Query: 133 -----FGKELHCHVLKFGFDS----SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
                +G+    H+ +  FD     ++   NA+I  Y   G +  AR +FD   + DV++
Sbjct: 218 TLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVIS 277

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           W  M + Y +  QF E  +LF EM    V P  +T+  VLSACA    LDVG+ AH Y++
Sbjct: 278 WTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQ 337

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           +  +  ++ + NAL DMY  CG +  ALE+F  ++ KD +SWT+I++G    G  D A  
Sbjct: 338 KYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALD 397

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           YF +M                            RE+    ++P     V IL ACA+ G 
Sbjct: 398 YFSRM---------------------------LREV----VQPSHGAFVGILLACAHAGL 426

Query: 364 LELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
           ++ G E+ ++      +K ++     ++D+  + G++++A    +EM +  D   W  ++
Sbjct: 427 VDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILL 486

Query: 422 VGLAINGH 429
               ++G+
Sbjct: 487 SASQVHGN 494


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/688 (37%), Positives = 379/688 (55%), Gaps = 39/688 (5%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS-------------------------RID 94
           S  G +  A  +FR IPRP    +NT++   +                          I 
Sbjct: 80  SANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMIS 139

Query: 95  SHKNGVLIYLDMLKSDVRP--DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
           SH N  L+ L     D+ P  D  ++  +L  + R+  VE  + L     ++     V  
Sbjct: 140 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DVIS 195

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL+S Y   G++  AR +FD     DVV+WN M SGY R     E R+LF     + V
Sbjct: 196 WNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV 255

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
                T   V+S  A+   L+  +R    + E     N +  NA+   Y     M  A E
Sbjct: 256 F----TWTAVVSGYAQNGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMDEAKE 307

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  +  ++V SW  ++TGY   G ++ A+  FD MP++D V W AM+  Y +     E 
Sbjct: 308 LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L LF EM       +      +L+ CA++ ALE G  +   + +       FVGNAL+ M
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 427

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG++E A+  F EM  +D  +W  MI G A +G G ++L++F  M   S  PD++T 
Sbjct: 428 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           VGVL+AC+H+G+V++G  YF  M    G+     HY CM+DLLGRAG L EA +++K+MP
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            +P+S +WGALLGA R+HR+ E+   AA++I EL+P+N  +YVLL NIYA+  +W + R+
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 607

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R M+ +RG+KK PG S IE+   VH F AGD  HP+ ++IY  L+++   +K  GY+  
Sbjct: 608 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSA 667

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
              V  DV EE+KE  +  HSEKLA+A+G+++  PG  IR++KNLR+C DCH   K +S 
Sbjct: 668 TDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISA 727

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  R +++RD  RFHHF+ GSCSC DYW
Sbjct: 728 IEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 158/382 (41%), Gaps = 59/382 (15%)

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
            +  V   N  I+ +   G V  A  +F    +    T+NAM +GY              
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYS------------- 80

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
                G LP + ++   +                         P+    N L    A   
Sbjct: 81  ---ANGRLPLAASLFRAIPR-----------------------PDNYSYNTLLHALAVSS 114

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            +  A  +F  +  +D +++  +++ + N G V +AR YFD  PE+D V W  M+  Y+R
Sbjct: 115 SLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVR 174

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL-ELGEWVKTYIDKNKVKNDIF 384
             R  EA  LF     S    D  +  ++++     G + E  E       ++ V  +I 
Sbjct: 175 NGRVEEARGLF----NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM 230

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           V       Y + GD+ +A+R+F     +D FTWTA++ G A NG  +++  +F  M    
Sbjct: 231 VSG-----YARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER- 284

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
              + V++  +++A     M+DE +E F  M  +     N A +  M+    +AG L EA
Sbjct: 285 ---NAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEA 336

Query: 505 LEVIKNMPMKPNSIVWGALLGA 526
             V   MP K +++ W A+L A
Sbjct: 337 KAVFDTMPQK-DAVSWAAMLAA 357



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 10/149 (6%)

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
           +++ ++   N  I  + + G V  A+R+F  M R+   T+ AM+ G + NG     L + 
Sbjct: 33  RLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGR----LPLA 88

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           + + RA   PD  +Y  +L A   +  + + R  F +M ++  +      Y  M+     
Sbjct: 89  ASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHAN 143

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            G ++ A       P K +++ W  +L A
Sbjct: 144 HGLVSLARHYFDLAPEK-DAVSWNGMLAA 171


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/619 (38%), Positives = 367/619 (59%), Gaps = 41/619 (6%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           ML+S   P+ +TFPF +K          GK+LHCHV K G     FVQ +LIS Y  C  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 166 VDMARGIFDVSYKDDVVT--WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           +D AR +FD + +   +T  +N++ SGY    +  +   LF EM   GV    VT++ ++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
             C    +L +G   H +  +                        F L++  ++ N    
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVK------------------------FGLDMDSSVGN---- 152

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
               ++T Y+  G++D  R+ FD+MP +  + W AMI+GY +       L L++EM++  
Sbjct: 153 ---CLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKG 209

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
             PD  T+V +L++CA+LGAL +G+ V+  ++     ++ F+ NAL++MY +CG+++KA+
Sbjct: 210 FCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKAR 269

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
            +F  M  K   +WTA+I G  ++G G+ ++ +F +M+R  I PD   +V VLSAC+H G
Sbjct: 270 DIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAG 329

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
           + ++G +YF  M  ++G+ P   HY CMVDLLGRAG LNEA E+I++M ++ +  +WGAL
Sbjct: 330 LTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGAL 389

Query: 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           LGAC++HR+ E+AE+A +Q++EL+P N   YVLL N+Y      +    +R ++  R +K
Sbjct: 390 LGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLK 449

Query: 584 KTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEE 643
           K PGCS +E  G VH F AGD++HPQT EIY KL+E+ + +K      D+     +  E 
Sbjct: 450 KDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELENLVK------DLDGCKKNDHER 503

Query: 644 DKE--RAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
            +E   ++  HSEKLA+AF L+++     I I+KNLR+C DCH   KLVS + DR+ +VR
Sbjct: 504 REEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVR 563

Query: 702 DKTRFHHFKHGSCSCKDYW 720
           D TRFHHFK+G CSCK+YW
Sbjct: 564 DATRFHHFKNGFCSCKEYW 582



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 23/310 (7%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           +H   +K GL  + +V N L+T    + G++    K+F ++PR  +  WN MI GY++  
Sbjct: 135 VHGFCVKFGLDMDSSVGNCLLTMYV-KSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNG 193

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
              N + +Y +M      PD  T   +L       A+  GKE+   +  FGF S+ F+ N
Sbjct: 194 LANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNN 253

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           AL++ Y  CG +  AR IFD      VV+W A+  GY    Q +    LF EM R G+ P
Sbjct: 254 ALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKP 313

Query: 215 TSVTIVLVLSACAKL----KDLD-VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
                V VLSAC+      K LD  G    +Y     + P     + + D+    G +  
Sbjct: 314 DGTAFVSVLSACSHAGLTNKGLDYFGVMERKY----GLRPGAEHYSCMVDLLGRAGRLNE 369

Query: 270 ALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTAM--- 319
           A E+  +++ + D   W A++        V++A   F+Q+ E +      YVL + +   
Sbjct: 370 ARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTE 429

Query: 320 ---IDGYLRV 326
              ++G LRV
Sbjct: 430 AGNLEGILRV 439


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/708 (36%), Positives = 391/708 (55%), Gaps = 43/708 (6%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S I    S     Q+H+  ++LGL+      +  +       G +  A KVF ++    V
Sbjct: 75  SLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDV 134

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE---- 136
             WN M+ G  R       V ++  M+   V  D  T   +L      + V  G +    
Sbjct: 135 PAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLP-----MCVLLGDQVLAL 189

Query: 137 -LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
            +H + +K G D  +FV NALI  Y   G ++ A+ +F      D+VTWN++ SG ++  
Sbjct: 190 VMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRG 249

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           Q     K+F  M   GV P  +T+V + SA A+  D    K  H YV             
Sbjct: 250 QTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMR----------- 298

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
                       G+ ++        D+I+  AIV  Y     ++ A++ FD MP +D V 
Sbjct: 299 -----------RGWDVD--------DIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVS 339

Query: 316 WTAMIDGYLRVNRFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
           W  +I GY++     EA+  +  MQ    ++  + T VS+L A ++LGAL+ G  +    
Sbjct: 340 WNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALS 399

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K  +  D++VG  LID+Y KCG + +A  +F +M R+    W A+I GL ++GHG ++L
Sbjct: 400 IKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEAL 459

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            +FS+M +  I PD VT+V +L+AC+H G+VD+GR +F  M + + I P   HY CM D+
Sbjct: 460 TLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADM 519

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L+EA   I+NMP+KP+S VWGALLGACR+H + EM ++A++ + ELDP+N   Y
Sbjct: 520 LGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYY 579

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS--HPQTKE 612
           VL+ N+YA   +WD   E+R ++  + ++KTPG S IE+   V+ F +G+++  HPQ +E
Sbjct: 580 VLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEE 639

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I  +L  + + ++ VGY+ D S V  DV +++KE  +  HSE+LA+AFG+I++     + 
Sbjct: 640 IQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIINTPSRTPLH 699

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I KNLR+C DCH   K +S + +RE+IVRD  RFHHFK G CSC D+W
Sbjct: 700 IYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/685 (36%), Positives = 381/685 (55%), Gaps = 68/685 (9%)

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV-LKFGFDSSVFVQNALISTYCL 162
           +D L S    ++ ++  LL    R   V   K L  H+ L     +  F+QN L+  Y  
Sbjct: 11  IDALYSRGTANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAK 70

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM--------------- 207
            G +  AR +FD   + DV +WNAM S Y +    ++ R +F +M               
Sbjct: 71  SGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGF 130

Query: 208 ----------------ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
                           + +G   T  T V VL AC++L D+  GK+ H  +    +  ++
Sbjct: 131 SGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESV 190

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ-------------- 297
            + NALT+MYA CG +  A  +F  + NK+V+SW ++++GY+  GQ              
Sbjct: 191 FVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSS 250

Query: 298 ---------------------VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
                                +D A + F ++ E+D V WT M+ G  +  +  +AL LF
Sbjct: 251 GLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLF 310

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
           REM   N+RPD FTI S++++CA L +L  G+ V        V +D+ V +AL+DMY KC
Sbjct: 311 REMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKC 370

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G+   A  VF+ ML ++  +W +MI+G A NG   ++L ++ +ML  ++ PD +T+VGVL
Sbjct: 371 GETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVL 430

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC H G+V+ G+ YF  ++  HG+ P   HY CM++LLGRAG++++A+++IK+M  +PN
Sbjct: 431 SACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPN 490

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
            ++W  LL  CR++ D    EMAA+ + ELDP N   Y++L NIYAAC RW +   +R +
Sbjct: 491 CLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSL 550

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + +  IKK    S IE++  VH+FVA D++H +T++IY +L+ +   L+  G+ PD + V
Sbjct: 551 MKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLV 610

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT-IRIVKNLRMCVDCHRMAKLVSMVYD 695
             DV EE+K  ++  HSEKLA+AF LI    G T IRI+KN+R+C DCH   K VS +  
Sbjct: 611 LHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIR 670

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           R +I+RD  RFHHF  G CSCKD W
Sbjct: 671 RPIILRDINRFHHFIEGRCSCKDSW 695


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/632 (38%), Positives = 361/632 (57%), Gaps = 32/632 (5%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           LL+   +  ++   K++H H LK   ++   V + L   Y  C +V +AR +FD      
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           V+ WN +   Y     FD    L+  M   GV P   T   VL AC+ L  ++ G   H 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD- 299
           + K   +  ++ +  AL D YA CG +  A  +F ++ ++DV++W A++ G    G  D 
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 300 -------------------------------MARQYFDQMPERDYVLWTAMIDGYLRVNR 328
                                           AR+ FD M  R+ V W+AMI GY+  + 
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDC 253

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
            +EAL +FR MQ S I PD  T++ +L AC++L AL+ G     Y+       D  + NA
Sbjct: 254 MKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA 313

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDMY KCG +  A+ VF  M R D  +W AMI+G  I+G G ++L +F  +L   + PD
Sbjct: 314 LIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPD 373

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
           ++T++ +LS+C+H+G+V EGR +F  M+    I P   H  CMVD+LGRAG ++EA   I
Sbjct: 374 DITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFI 433

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
           +NMP +P+  +W ALL ACR+H++ E+ E  +K+I  L P++   +VLL NIY+A  RWD
Sbjct: 434 RNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWD 493

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
           +   +R    D G+KK PGCS IE+NG+VH FV GD+SH Q  +I  KL+E+  ++K +G
Sbjct: 494 DAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLG 553

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           Y  + S VF DV EE+KE+ +  HSEKLA+AFG+++   G  I + KNLR+C DCH   K
Sbjct: 554 YQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIK 613

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            ++++  RE+ VRD  RFHHFK+G+C+C D+W
Sbjct: 614 FMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/442 (28%), Positives = 207/442 (46%), Gaps = 38/442 (8%)

Query: 23  IETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           +E C   +S+ + K+IH   +K     + +V +KL     S    +  A ++F +IP PS
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLS-CNQVVLARRLFDEIPNPS 73

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           V LWN +I+ Y+        + +Y  ML   VRP+ YT+PF+LK  +  +A+E G E+H 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           H   FG +S VFV  AL+  Y  CG +  A+ +F      DVV WNAM +G       D+
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKL----KDLDV--------------GKRAHRY 241
             +L  +M+ +G+ P S TIV VL  C  L    K  DV              G  A   
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDC 253

Query: 242 VKECKIVPNLI----LENALTDMYA---ACGEM-----GFALEIFGNIKN--KDVISWTA 287
           +KE   +  ++    ++  LT M     AC  +     GF    +  ++    D +   A
Sbjct: 254 MKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA 313

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           ++  Y   G++  AR+ F++M   D V W AMI GY       EAL LF ++    ++PD
Sbjct: 314 LIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPD 373

Query: 348 EFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           + T + +L++C++ G +  G  W         +   +     ++D+  + G +++A    
Sbjct: 374 DITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFI 433

Query: 407 REM-LRKDKFTWTAMIVGLAIN 427
           R M    D   W+A++    I+
Sbjct: 434 RNMPFEPDVRIWSALLSACRIH 455



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 22/229 (9%)

Query: 17  TPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           T ++  +  C  +  L+     H   I  G  T+  + N L+    S+ G + +A +VF 
Sbjct: 274 TTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMY-SKCGKISFAREVFN 332

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           ++ R  +  WN MI GY         + ++ D+L   ++PD+ TF  LL   +    V  
Sbjct: 333 RMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVME 392

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLC--------GEVDMARG-IFDVSYKDDVVTW 184
           G+      L F   S  F     +  +C+C        G +D A   I ++ ++ DV  W
Sbjct: 393 GR------LWFDAMSRDFSIVPRME-HCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIW 445

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL--VLSACAKLKD 231
           +A+ S  +  K  +   ++  +++  G   T   ++L  + SA  +  D
Sbjct: 446 SALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDD 494


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/621 (37%), Positives = 354/621 (57%), Gaps = 36/621 (5%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  ++     SS  +   LIS+  L   ++ +  +F+     ++ T+NA+  G     
Sbjct: 99  QIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNS 158

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
            F      F  M R G+ P  +T   VL + A L   ++G   H  +  C I  +  +  
Sbjct: 159 HFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRV 218

Query: 256 ALTDMYAACGEMGFALEIF--------------------------GNIKN---------- 279
           +L DMY    ++G A ++F                          G++K           
Sbjct: 219 SLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPK 278

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           K+ +SW+ ++ G+   G +D A + FDQMPE++ V WT M+DG+ R     +AL++F +M
Sbjct: 279 KENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKM 338

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
               +RP+ FTIVS L+ACA +G LE G  +  YI  N +     +G AL+DMY KCG++
Sbjct: 339 LEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNI 398

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           E A  VF E  +K   TWT MI G AI+GH ++++  F QM+ A I PDEV ++ +L+AC
Sbjct: 399 ESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTAC 458

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
            H+G VD G  +F  M + + IEP+  HY  +VD+LGR+G L EAL  I+ MPM P+ ++
Sbjct: 459 MHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVI 518

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           WGAL  ACR H+  +MA+ A  ++L+L+P +   Y+ L N YAA  +W++   +R ++ +
Sbjct: 519 WGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQN 578

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
           RG+ K  G S IE+ G VH FV+GD  H  +K I LKL+E+ +     GY+P    V  +
Sbjct: 579 RGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHN 638

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           + +E+KE  +  H EKLA+AF LI + PG+TIRIVKNL++C DCH + K  S +  RE++
Sbjct: 639 MEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIM 698

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           +RD  RFHHFK GSCSC+D+W
Sbjct: 699 LRDMKRFHHFKDGSCSCRDHW 719



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 204/485 (42%), Gaps = 108/485 (22%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           PP+T T E   IS I   +++ QL QIH+Q I   L ++  +  +L++   S +  + ++
Sbjct: 75  PPTTPT-EAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLIS-SSSLRKSINHS 132

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
             VF      ++  +N +I+G +      N +  +  ML+S ++PD  T+PF+LK     
Sbjct: 133 LAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGL 192

Query: 129 IAVEFGKELHCHVLKFG---------------------------FD---------SSVFV 152
            + E G  +HC +L+ G                           FD         SS  +
Sbjct: 193 FSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALL 252

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK-- 210
            N LI   C  G +  A  +F    K + V+W+ +  G+ +    D   +LF +M  K  
Sbjct: 253 WNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNV 312

Query: 211 -----------------------------GVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
                                        GV P + TIV  LSACAK+  L+ G R H+Y
Sbjct: 313 VSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKY 372

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           +K+  +     L  AL DMYA CG +  A E+FG  + K + +WT ++ G+   G  +  
Sbjct: 373 IKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSE-- 430

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                        +A+  F++M  + I+PDE   +++LTAC + 
Sbjct: 431 -----------------------------QAIACFKQMMFAGIKPDEVVFLALLTACMHS 461

Query: 362 GALELGEWVKTYIDKNK----VKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFT 416
           G +++G     + D  +    ++  +     ++DM  + G +++A R    M +  D   
Sbjct: 462 GQVDIG---LNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVI 518

Query: 417 WTAMI 421
           W A+ 
Sbjct: 519 WGALF 523


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/624 (38%), Positives = 366/624 (58%), Gaps = 36/624 (5%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P   T    ++     C +   LKQ  S  I  GL  +    + ++    S   D+ Y  
Sbjct: 2   PKLATLRHSILCCFHKCGTFDHLKQTTSILITSGLAHHTFFLSDILR---SATKDLGYTL 58

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
            +F ++  P + LWNT+I+G+S     +  ++ Y  +    V PD +TFP LLK F++ +
Sbjct: 59  LLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSK-L 117

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
             E   + + H++KFG D   FVQN+L+S +  CG VD +R +F  + K DVV+W A+ +
Sbjct: 118 RNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALIN 177

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR-YVKECKIV 248
           G  R  +  E  + F EM   GV    VTIV VL A A L+D+  G+  H  YV+  +++
Sbjct: 178 GCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVI 237

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            ++ + +AL DMY+ CG                                 D A + F++M
Sbjct: 238 WDVYVGSALVDMYSKCG-------------------------------YCDDAVKVFNEM 266

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
           P R+ V W A+I GY++ NR++EAL +F+EM    I P++ T+ S LTACA LG+L+ G 
Sbjct: 267 PTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGR 326

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           W+  Y+D++K+  +  +G AL+DMY KCG V++A  VF ++  KD + WTAMI GLA+ G
Sbjct: 327 WLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRG 386

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
               SL++FSQM+R+ + P+ VT++GVLSAC H G+VDEG E F  M   + +EPN  HY
Sbjct: 387 DALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHY 446

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
           GCMVDLLGRAG L EA++ I++MPM+P   VWGAL   C +H+  E+ E     +++L P
Sbjct: 447 GCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQP 506

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
            +   Y+LL N+Y+ C +W+    +R+++  +G+ K+PGCS IE+NGV+HEF+A DKSH 
Sbjct: 507 HHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNGVIHEFIAFDKSHT 566

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPD 632
           ++  +Y+ L+ +++ LK   Y  D
Sbjct: 567 ESINVYMMLESVSAQLKLATYALD 590


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/728 (34%), Positives = 391/728 (53%), Gaps = 65/728 (8%)

Query: 25  TCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWN 84
           + +S  Q +Q+H+Q +K    +   +   L  +  S    +  + ++F  I  P    W 
Sbjct: 18  SIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIY--SHINLLHDSLRLFNTIHFPPALAWK 75

Query: 85  TMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF 144
           ++I+ Y+        +  ++ ML S + PD+  FP +LK     + +  G+ LH ++++ 
Sbjct: 76  SVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRV 135

Query: 145 GFDSSVFVQNALISTYCL-------------CGEV-------------------DMARGI 172
           G D  ++  NAL++ Y                GEV                   D  R I
Sbjct: 136 GLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKI 195

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           F++  + D+V+WN + +G  R   ++ET ++  EM    + P S T+  VL   A+  D+
Sbjct: 196 FEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDI 255

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
             GK  H       +  ++ + ++L DMYA C  +  +  +F                  
Sbjct: 256 SRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF------------------ 297

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
                          + ERD + W ++I G ++   F E L  FR+M  + I+P  ++  
Sbjct: 298 -------------TLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFS 344

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           SI+ ACA+L  L LG+ +  YI +N    +IF+ ++L+DMY KCG++  A+++F  M  +
Sbjct: 345 SIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR 404

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D  +WTAMI+G A++G    ++++F QM    I P+ V ++ VL+AC+H G+VDE  +YF
Sbjct: 405 DMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYF 464

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
             MT   GI P   HY  + DLLGRAG L EA + I  M + P   +W  LL ACRVH +
Sbjct: 465 NSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXN 524

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE 592
            +MAE  A +ILE+DP+N   Y+LL NIY+A  RW    + R  +   GI+KTP CS IE
Sbjct: 525 IDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIE 584

Query: 593 MNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQH 652
           +   V+ F+AGD+SHP  ++I   ++ +   ++  GY+PD SEV  DV EE K+  V  H
Sbjct: 585 VKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSH 644

Query: 653 SEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHG 712
           SE+LA+ FG+I++  G+TIR+ KNLR+C DCH   K +S +  RE++VRD +RFHHFK+G
Sbjct: 645 SERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNG 704

Query: 713 SCSCKDYW 720
           +CSC DYW
Sbjct: 705 TCSCGDYW 712


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/758 (33%), Positives = 398/758 (52%), Gaps = 72/758 (9%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI-PRPSVCLWNTMIKGYSR 92
           Q+H+  +  G  ++  V N LV       G M  A +VF +     +   WN ++  Y +
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMY-GGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            D   + + ++ +M+ S ++P  + F  ++   T    +E G+++H  V++ G+D  VF 
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL+  Y   G VD+A  IF+     DVV+WNA+ SG           +L  +M+  G+
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGL 299

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAH-------------------------------RY 241
           +P   T+  +L AC+     D+G++ H                               R 
Sbjct: 300 VPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARK 359

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD----------VISWTA---- 287
           V +     +LIL NAL    +  G    AL +F  ++ +           V+  TA    
Sbjct: 360 VFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEA 419

Query: 288 ----------------IVTGYINRGQVDM---------ARQYFDQMPERDYVLWTAMIDG 322
                           I   ++  G +D          A + F++    D +  T+MI  
Sbjct: 420 ASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITA 479

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
             + +    A+ LF EM    + PD F + S+L ACA+L A E G+ V  ++ K +  +D
Sbjct: 480 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 539

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
            F GNAL+  Y KCG +E A+  F  +  +   +W+AMI GLA +GHG ++L++F +M+ 
Sbjct: 540 AFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVD 599

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             I P+ +T   VL AC H G+VDE + YF  M    GI+  E HY CM+DLLGRAG L+
Sbjct: 600 EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLD 659

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           +A+E++ +MP + N+ +WGALLGA RVH+D E+ ++AA+++  L+P+    +VLL N YA
Sbjct: 660 DAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYA 719

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
           +   W+   ++R+++ D  IKK P  S IE+   VH F+ GDKSHP TKEIY KL E+  
Sbjct: 720 SAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGD 779

Query: 623 DLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
            +   G++P++     D+   +KE  +  HSE+LA+AF L+S+ PG  IR+ KNLR+C D
Sbjct: 780 LMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRD 839

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           CH   K +S +  RE+I+RD  RFHHF+ G+CSC DYW
Sbjct: 840 CHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 205/448 (45%), Gaps = 52/448 (11%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTF-------CCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
            +H+  +K G L   + +N L++F       CC+ +         F +IP P    W+++
Sbjct: 25  HLHASLLKSGSLA--SFRNHLISFYSKCRRPCCARR--------FFDEIPDPCHVSWSSL 74

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           +  YS     ++ +  +  M    V  + +  P +LK          G ++H   +  GF
Sbjct: 75  VTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---ARLGAQVHAMAMATGF 131

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
            S VFV NAL++ Y   G +D AR +F +   + + V+WN + S Y +  Q  +  ++FG
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           EM   G+ PT      V++AC   ++++ G++ H  V       ++   NAL DMY   G
Sbjct: 192 EMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMG 251

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            +  A  IF  + + DV+SW A+++G +  G               D+            
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGH--------------DH------------ 285

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
                 A+ L  +M+ S + P+ FT+ SIL AC+  GA +LG  +  ++ K    +D ++
Sbjct: 286 -----RAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYI 340

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
           G  L+DMY K   ++ A++VF  M  +D     A+I G +  G  D++L +F ++ +  +
Sbjct: 341 GVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGL 400

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +  T   VL +          R+  A
Sbjct: 401 GVNRTTLAAVLKSTASLEAASTTRQVHA 428



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 176/395 (44%), Gaps = 39/395 (9%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G  LH  +LK G  +S   +N LIS Y  C     AR  FD       V+W+++ + Y  
Sbjct: 23  GAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                   + F  M  +GV      + +VL                      K VP+  L
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVL----------------------KCVPDARL 118

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM-PERD 312
              +  M  A G        FG+    DV    A+V  Y   G +D AR+ F++   ER+
Sbjct: 119 GAQVHAMAMATG--------FGS----DVFVANALVAMYGGFGFMDDARRVFNEADSERN 166

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W  ++  Y++ ++  +A+ +F EM  S I+P EF    ++ AC     +E G  V  
Sbjct: 167 AVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHA 226

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            + +     D+F  NAL+DMY K G V+ A  +F +M   D  +W A+I G  +NGH  +
Sbjct: 227 MVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 286

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           ++++  QM  + ++P+  T   +L AC+  G  D GR+    M   +    +    G +V
Sbjct: 287 AIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG-LV 345

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
           D+  +   L++A +V   M    + I+  AL+  C
Sbjct: 346 DMYAKNHFLDDARKVFDWM-FHRDLILCNALISGC 379



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 156/344 (45%), Gaps = 16/344 (4%)

Query: 14  TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT--FCCSEKGDMKYACKV 71
           T    ++    + E+    +Q+H+  +K+G + +  V N L+   + CS   D   A +V
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSD---ANRV 461

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           F +     +    +MI   S+ D  +  + ++++ML+  + PD +    LL       A 
Sbjct: 462 FEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAY 521

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           E GK++H H++K  F S  F  NAL+ TY  CG ++ A   F    +  VV+W+AM  G 
Sbjct: 522 EQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGL 581

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            +        +LFG M  +G+ P  +T+  VL AC     +D  KR    +KE   +   
Sbjct: 582 AQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRT 641

Query: 252 ILE-NALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDM----ARQYF 305
               + + D+    G++  A+E+  ++  +   S W A++         ++    A + F
Sbjct: 642 EEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLF 701

Query: 306 DQMPERD--YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
              PE+   +VL   + + Y     + E   + + M+ SNI+ +
Sbjct: 702 ILEPEKSGTHVL---LANTYASAGMWNEVAKVRKLMKDSNIKKE 742


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/589 (39%), Positives = 356/589 (60%), Gaps = 37/589 (6%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLC--GEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H  VLK+    + F  + L++T  L   G +D A  IF    +     +N M  GY 
Sbjct: 5   KQVHAQVLKW---ENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYV 61

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
            V   +    L+ EM  +GV   + T   +  ACA L+ ++ G + H Y+ +  +  +L 
Sbjct: 62  NVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLF 121

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           ++N+L +MY  CG                               +++++   F+ M  RD
Sbjct: 122 VQNSLINMYGKCG-------------------------------KIELSCSVFEHMDRRD 150

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVK 371
              W+A+I  +  +  + E L++F EM +  + RP+E  +VS+L+AC +LGAL+LG    
Sbjct: 151 VASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTH 210

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
             + +N  + ++ V  +LIDMY KCG +EK   +F+ M++K++ +++ MI GLA++G G 
Sbjct: 211 VTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGM 270

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L +FS ML   + PD+V Y+GVLSAC H G+VDEG + F  M ++HGIEP   HYGC+
Sbjct: 271 EALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCI 330

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           V L+GRAG LN+ALE I++MP+KPN +VW  LL AC+ H + E+ E+AAK + EL+  N 
Sbjct: 331 VHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNP 390

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YV+L N+YA   RW++  ++R  +  +G  +TPG S++++   +++FV+ D SHPQ K
Sbjct: 391 GDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCK 450

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            +Y  + +M   LKF GY PD S+V  DV EE+K + +  HS+KLAMAF LI +  G  I
Sbjct: 451 GMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPI 510

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI +NLRMC DCH   KL+S++Y RE+ VRD+ RFHHFK G+CSC+DYW
Sbjct: 511 RIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCRDYW 559



 Score =  189 bits (479), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 211/434 (48%), Gaps = 54/434 (12%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           M + KQ+H+Q +K     N    + LV  C  S+ G M YAC +FR+I +P    +NTMI
Sbjct: 1   MEEFKQVHAQVLKW---ENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMI 57

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           +GY  + + +N + +Y +ML+  V  DN+T+P L K      ++E G ++H ++ K G +
Sbjct: 58  RGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLE 117

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
             +FVQN+LI+ Y  CG+++++  +F+   + DV +W+A+ + +  +  + E   +FGEM
Sbjct: 118 GDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEM 177

Query: 208 ERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAH----RYVKECKIVPNLILENALTDMYA 262
            R+G   P    +V VLSAC  L  LD+G+  H    R ++E     N+I++ +L DMY 
Sbjct: 178 SREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIRE----MNVIVQTSLIDMYV 233

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER----DYVLWTA 318
            CG +   L +F  +  K+ +S++ ++TG    G+   A Q F  M E     D V++  
Sbjct: 234 KCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLG 293

Query: 319 MIDGYLRVNRFREALTLFREMQTSN---------------------------------IR 345
           ++          E L  F  M+  +                                 I+
Sbjct: 294 VLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIK 353

Query: 346 PDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           P+E     +L+AC     LE+GE   K+  + N      +V   L +MY +    E   +
Sbjct: 354 PNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYV--VLSNMYARAKRWEDVAK 411

Query: 405 VFREMLRKDKFTWT 418
           +  EM RK  FT T
Sbjct: 412 IRTEMARKG-FTQT 424



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 147/332 (44%), Gaps = 15/332 (4%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
            L     +  S+ +  QIH    K GL  +  VQN L+     + G ++ +C VF  + R
Sbjct: 90  ALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINM-YGKCGKIELSCSVFEHMDR 148

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             V  W+ +I  ++ +      + ++ +M +    RP+      +L   T   A++ G+ 
Sbjct: 149 RDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRC 208

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
            H  +L+   + +V VQ +LI  Y  CG ++    +F    K + ++++ M +G     +
Sbjct: 209 THVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGR 268

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILEN 255
             E  ++F +M  +G+ P  V  + VLSAC     +D G +    +K E  I P +    
Sbjct: 269 GMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYG 328

Query: 256 ALTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVTG---YINRGQVDMARQYFDQMPE 310
            +  +    G +  ALE   +  IK  +V+ W  +++    + N    ++A +   ++  
Sbjct: 329 CIVHLMGRAGMLNKALEHIRSMPIKPNEVV-WRGLLSACKFHHNLEIGEIAAKSLGELNS 387

Query: 311 R---DYVLWTAMIDGYLRVNRFREALTLFREM 339
               DYV+ + M   Y R  R+ +   +  EM
Sbjct: 388 SNPGDYVVLSNM---YARAKRWEDVAKIRTEM 416


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/655 (36%), Positives = 379/655 (57%), Gaps = 36/655 (5%)

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           R + +  V  WN++I   +R       +  +  M K  + P   +FP  +K  +  + + 
Sbjct: 34  RYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIF 93

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            GK+ H     FG+ S +FV +ALI  Y  CG+++ AR +FD   K ++V+W +M  GY 
Sbjct: 94  SGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYD 153

Query: 193 RVKQFDETRKLFGEM------ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
                 +   LF ++      +   +   S+ +V V+SAC+++    + +  H +V +  
Sbjct: 154 LNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRG 213

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
               + + N L D YA  GE G A+                             AR+ FD
Sbjct: 214 FDRGVSVGNTLLDAYAKGGEGGVAV-----------------------------ARKIFD 244

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALE 365
           Q+ ++D V + +++  Y +     EA  +FR + +   +  +  T+ ++L A ++ GAL 
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALR 304

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
           +G+ +   + +  +++D+ VG ++IDMYCKCG VE A+  F  M  K+  +WTAMI G  
Sbjct: 305 IGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYG 364

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           ++GH  K+L++F  M+ + + P+ +T+V VL+AC+H G+ D G  +F  M  + G+EP  
Sbjct: 365 MHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGL 424

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HYGCMVDLLGRAG L +A ++I+ M M+P+SI+W +LL ACR+H++ E+AE++  ++ E
Sbjct: 425 EHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFE 484

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           LDP N   Y+LL +IYA   RW +   +R  + +RG+ K PG S++E+NG VH F+ GD+
Sbjct: 485 LDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDE 544

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
            HPQ ++IY  L E+   L   GY+ + S V  DV EE+KE  +  HSEKLA+AFG++++
Sbjct: 545 EHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNT 604

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            PG T+ +VKNLR+C DCH + KL+S + DRE +VRD  RFHHFK G CSC DYW
Sbjct: 605 VPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 197/437 (45%), Gaps = 46/437 (10%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           SS+   S     +     I+ C S+  +   KQ H Q    G  ++  V + L+    S 
Sbjct: 65  SSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMY-ST 123

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF--- 118
            G ++ A KVF +IP+ ++  W +MI+GY    +  + V ++ D+L  +   D   F   
Sbjct: 124 CGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDS 183

Query: 119 ---PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE--VDMARGIF 173
                ++   +R  A    + +H  V+K GFD  V V N L+  Y   GE  V +AR IF
Sbjct: 184 MGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIF 243

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP-TSVTIVLVLSACAKLKDL 232
           D     D V++N++ S Y +    +E   +F  + ++ V+    +T+  VL A +    L
Sbjct: 244 DQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGAL 303

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
            +GK  H  V    +  ++I+  ++ DMY  CG +  A   F  +KNK+V SWTA++ GY
Sbjct: 304 RIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGY 363

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G                                  +AL LF  M  S +RP+  T V
Sbjct: 364 GMHGHA-------------------------------AKALELFPAMIDSGVRPNYITFV 392

Query: 353 SILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-L 410
           S+L AC++ G  ++G  W      +  V+  +     ++D+  + G ++KA  + ++M +
Sbjct: 393 SVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKM 452

Query: 411 RKDKFTWTAMIVGLAIN 427
             D   W++++    I+
Sbjct: 453 EPDSIIWSSLLAACRIH 469


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/727 (34%), Positives = 393/727 (54%), Gaps = 84/727 (11%)

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF  +P+ +V  W +++ G +    H   + ++  M    + P+ +TF  +L       
Sbjct: 156 EVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQG 215

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A++ G+ +H   +KFG  SSVFV N+L++ Y  CG V+ A+ +F+     D+V+WN + +
Sbjct: 216 ALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMA 275

Query: 190 GYK-------RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           G +        ++ F E+R   G+M       T  T   V+  CA LK L + ++ H  V
Sbjct: 276 GLQLNECELEALQLFHESRATMGKM-------TQSTYATVIKLCANLKQLALARQLHSCV 328

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFG-NIKNKDVISWTAIVTGYINRGQVDMA 301
            +        +  AL D Y+ CGE+  AL IF     +++V+SWTAI++G I  G + +A
Sbjct: 329 LKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388

Query: 302 RQYFDQMPERDYVL------------------------------------WTAMIDGYLR 325
              F +M E D V+                                     TA++  Y +
Sbjct: 389 VVLFSRMRE-DRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSK 447

Query: 326 VNRFREALTLFR-------------------------------EMQTSNIRPDEFTIVSI 354
                +AL++F+                               +M    I+P+EFTI S+
Sbjct: 448 FGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSV 507

Query: 355 LTACANLGA-LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           + ACA   A ++ G        K +  + I V +AL+ MY + G+++ AQ VF     +D
Sbjct: 508 IDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRD 567

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +W +MI G A +G+  K+++ F QM  + I  D VT++ V+  CTH G+V EG++YF 
Sbjct: 568 LVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFD 627

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
            M   H I P   HY CMVDL  RAG L+E + +I++MP    ++VW  LLGACRVH++ 
Sbjct: 628 SMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNV 687

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           E+ + +A ++L L+P + + YVLL NIYAA  +W    E+R+++  R +KK  GCS I++
Sbjct: 688 ELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQI 747

Query: 594 NGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHS 653
              VH F+A DKSHP + +IY KL  + + LK  GY P+ S V  D+ E+ KE  +  HS
Sbjct: 748 KNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHS 807

Query: 654 EKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
           E+LA+AFGLI++ PG  ++IVKNLR+C DCH + K+VSM+ DRE+I+RD +RFHHF  G+
Sbjct: 808 ERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGA 867

Query: 714 CSCKDYW 720
           CSC D+W
Sbjct: 868 CSCGDFW 874



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 158/363 (43%), Gaps = 31/363 (8%)

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233
           ++  +D  V  N +   Y R     E    F    R GVL  S T+  VL          
Sbjct: 57  EIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVL---------- 106

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
                    K C+ VP+ +L   L  +   CG               +V + T++V  Y+
Sbjct: 107 ---------KACRSVPDRVLGEQLHCLCVKCGH-----------DRGEVSAGTSLVDMYM 146

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
             G V    + F+ MP+++ V WT+++ G        E + LF  M+   I P+ FT  S
Sbjct: 147 KCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFAS 206

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L+A A+ GAL+LG+ V     K   ++ +FV N+L++MY KCG VE A+ VF  M  +D
Sbjct: 207 VLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRD 266

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +W  ++ GL +N    ++L +F +         + TY  V+  C +   +   R+  +
Sbjct: 267 MVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHS 326

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
              ++HG          + D   + G L +AL +        N + W A++  C  + D 
Sbjct: 327 -CVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDI 385

Query: 534 EMA 536
            +A
Sbjct: 386 PLA 388



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 114/236 (48%), Gaps = 3/236 (1%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           QIH+Q IK      P+V   L+    S+ G  + A  +F+ I +  V  W+ M+  +++ 
Sbjct: 421 QIHAQVIKTNYQHIPSVGTALLA-SYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQA 479

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT-RDIAVEFGKELHCHVLKFGFDSSVFV 152
              +    ++  M    ++P+ +T   ++         V+ G++ H   +K+ +  ++ V
Sbjct: 480 GDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICV 539

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            +AL+S Y   G +D A+ +F+     D+V+WN+M SGY +     +  + F +ME  G+
Sbjct: 540 SSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGI 599

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEM 267
               VT + V+  C     +  G++     V++ KI P +     + D+Y+  G++
Sbjct: 600 QMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKL 655


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/504 (44%), Positives = 328/504 (65%), Gaps = 8/504 (1%)

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-----HRYVKECKIVPNLILENAL 257
           L+  + R G  PT  T+  +L + A L     G R      H +  +  +   L++ NAL
Sbjct: 193 LYAHLLRAGHHPTPHTLPSLLKSLA-LSPAVPGARGLALAVHAHAVKLGLAGFLLVSNAL 251

Query: 258 TDMYAA-CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
             ++A   G +  AL +     + D  ++  ++T Y   G+V  AR  FD+MP R+ V W
Sbjct: 252 IRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSW 311

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           +AM++GY++    REAL LF  MQ   +RPD+  +V +L ACA LG LE G+WV  Y+  
Sbjct: 312 SAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKA 371

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           N ++  +F+G AL+DMY KCG+++ A  VF+ M  K+   WT MI GLA++G G ++L++
Sbjct: 372 NNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALEL 431

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           FSQM R  + PD++ ++G L ACTHTG+VD+GRE F  M  ++GI+P   HYGCMVDLL 
Sbjct: 432 FSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLA 491

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R G LNEA E+++ MPMKP++++WGAL+  CR H++ E+AE   K  +EL+PD    YVL
Sbjct: 492 RNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVL 551

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L NIYAA  R  + RE+R ++ ++G+ KTPGCS +E+ GV+H+F+ GD SHP  +EI  K
Sbjct: 552 LGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSK 611

Query: 617 LDEMTSDLKF-VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
            DE+ S ++   GY+PD  EV LD+ EE+KE A+ +HSEK+A+AF LI++   + IRIVK
Sbjct: 612 WDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVK 671

Query: 676 NLRMCVDCHRMAKLVSMVYDREVI 699
           NLR+C DCH + KL+S V+D  V+
Sbjct: 672 NLRVCHDCHHVTKLISKVFDLTVV 695



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 165/385 (42%), Gaps = 69/385 (17%)

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           R S  L N +I+  +        + +Y  +L++   P  +T P LLK      AV   + 
Sbjct: 168 RRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARG 227

Query: 137 L----HCHVLKFGFDSSVFVQNALI--------------------------------STY 160
           L    H H +K G    + V NALI                                + Y
Sbjct: 228 LALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAY 287

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
              G V  AR +FD     + V+W+AM +GY +     E   LF  M+  GV P    +V
Sbjct: 288 ARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLV 347

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            VL+ACA+L  L+ GK  H Y+K   I   + L  AL DMYA CGEM  A+E+F  +K K
Sbjct: 348 GVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEK 407

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +V++WT ++ G    G                               R  EAL LF +M+
Sbjct: 408 NVLAWTTMIKGLAMHG-------------------------------RGSEALELFSQME 436

Query: 341 TSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
              ++PD+   +  L AC + G ++ G E   + + K  +K  I     ++D+  + G +
Sbjct: 437 RLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLL 496

Query: 400 EKAQRVFREM-LRKDKFTWTAMIVG 423
            +A+ +  +M ++ D   W A++ G
Sbjct: 497 NEAREMVEKMPMKPDALIWGALMAG 521



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 9/295 (3%)

Query: 52  NKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV 111
           N L+T   +  G +  A  +F ++P  +   W+ M+ GY +    +  + ++  M    V
Sbjct: 281 NTLIT-AYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGV 339

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
           RPD+     +L    +   +E GK +H ++       +VF+  AL+  Y  CGE+ +A  
Sbjct: 340 RPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAME 399

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +F V  + +V+ W  M  G     +  E  +LF +MER GV P  +  +  L AC     
Sbjct: 400 VFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGL 459

Query: 232 LDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIV 289
           +D G+      V++  I P +     + D+ A  G +  A E+   +  K D + W A++
Sbjct: 460 VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALM 519

Query: 290 TGYINRGQVDMA----RQYFDQMPERD--YVLWTAMIDGYLRVNRFREALTLFRE 338
            G      V++A    + + +  P++   YVL   +     R    RE   L RE
Sbjct: 520 AGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMRE 574


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/758 (33%), Positives = 398/758 (52%), Gaps = 72/758 (9%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI-PRPSVCLWNTMIKGYSR 92
           Q+H+  +  G  ++  V N LV       G M  A +VF +     +   WN ++  Y +
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMY-GGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            D   + + ++ +M+ S ++P  + F  ++   T    +E G+++H  V++ G+D  VF 
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL+  Y   G VD+A  IF+     DVV+WNA+ SG           +L  +M+  G+
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGL 299

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAH-------------------------------RY 241
           +P   T+  +L AC+     D+G++ H                               R 
Sbjct: 300 VPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARK 359

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD----------VISWTA---- 287
           V +     +LIL NAL    +  G    AL +F  ++ +           V+  TA    
Sbjct: 360 VFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEA 419

Query: 288 ----------------IVTGYINRGQVDM---------ARQYFDQMPERDYVLWTAMIDG 322
                           I   ++  G +D          A + F++    D +  T+MI  
Sbjct: 420 ASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITA 479

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
             + +    A+ LF EM    + PD F + S+L ACA+L A E G+ V  ++ K +  +D
Sbjct: 480 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 539

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
            F GNAL+  Y KCG +E A+  F  +  +   +W+AMI GLA +GHG ++L++F +M+ 
Sbjct: 540 AFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVD 599

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             I P+ +T   VL AC H G+VDE + YF  M    GI+  E HY CM+DLLGRAG L+
Sbjct: 600 EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLD 659

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           +A+E++ +MP + N+ +WGALLGA RVH+D E+ ++AA+++  L+P+    +VLL N YA
Sbjct: 660 DAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYA 719

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
           +   W+   ++R+++ D  IKK P  S IE+   VH F+ GDKSHP TKEIY KL E+  
Sbjct: 720 SAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGD 779

Query: 623 DLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
            +   G++P++     D+   +KE  +  HSE+LA+AF L+S+ PG  IR+ KNLR+C D
Sbjct: 780 LMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRD 839

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           CH   K +S +  RE+I+RD  RFHHF+ G+CSC DYW
Sbjct: 840 CHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 206/448 (45%), Gaps = 52/448 (11%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTF-------CCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
            +H+  +K G L   + +N L++F       CC+ +        VF +IP P    W+++
Sbjct: 25  HLHASLLKSGSLA--SFRNHLISFYSKCRRPCCARR--------VFDEIPDPCHVSWSSL 74

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           +  YS     ++ +  +  M    V  + +  P +LK          G ++H   +  GF
Sbjct: 75  VTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---ARLGAQVHAMAMATGF 131

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
            S VFV NAL++ Y   G +D AR +F +   + + V+WN + S Y +  Q  +  ++FG
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           EM   G+ PT      V++AC   ++++ G++ H  V       ++   NAL DMY   G
Sbjct: 192 EMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMG 251

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            +  A  IF  + + DV+SW A+++G +  G               D+            
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGH--------------DH------------ 285

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
                 A+ L  +M+ S + P+ FT+ SIL AC+  GA +LG  +  ++ K    +D ++
Sbjct: 286 -----RAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYI 340

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
           G  L+DMY K   ++ A++VF  M  +D     A+I G +  G  D++L +F ++ +  +
Sbjct: 341 GVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGL 400

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +  T   VL +          R+  A
Sbjct: 401 GVNRTTLAAVLKSTASLEAASTTRQVHA 428



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 177/395 (44%), Gaps = 39/395 (9%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G  LH  +LK G  +S   +N LIS Y  C     AR +FD       V+W+++ + Y  
Sbjct: 23  GAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                   + F  M  +GV      + +VL                      K VP+  L
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVL----------------------KCVPDARL 118

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM-PERD 312
              +  M  A G        FG+    DV    A+V  Y   G +D AR+ F++   ER+
Sbjct: 119 GAQVHAMAMATG--------FGS----DVFVANALVAMYGGFGFMDDARRVFNEADSERN 166

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W  ++  Y++ ++  +A+ +F EM  S I+P EF    ++ AC     +E G  V  
Sbjct: 167 AVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHA 226

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            + +     D+F  NAL+DMY K G V+ A  +F +M   D  +W A+I G  +NGH  +
Sbjct: 227 MVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 286

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           ++++  QM  + ++P+  T   +L AC+  G  D GR+    M   +    +    G +V
Sbjct: 287 AIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG-LV 345

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
           D+  +   L++A +V   M    + I+  AL+  C
Sbjct: 346 DMYAKNHFLDDARKVFDWM-FHRDLILCNALISGC 379



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 156/344 (45%), Gaps = 16/344 (4%)

Query: 14  TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT--FCCSEKGDMKYACKV 71
           T    ++    + E+    +Q+H+  +K+G + +  V N L+   + CS   D   A +V
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSD---ANRV 461

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           F +     +    +MI   S+ D  +  + ++++ML+  + PD +    LL       A 
Sbjct: 462 FEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAY 521

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           E GK++H H++K  F S  F  NAL+ TY  CG ++ A   F    +  VV+W+AM  G 
Sbjct: 522 EQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGL 581

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            +        +LFG M  +G+ P  +T+  VL AC     +D  KR    +KE   +   
Sbjct: 582 AQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRT 641

Query: 252 ILE-NALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDM----ARQYF 305
               + + D+    G++  A+E+  ++  +   S W A++         ++    A + F
Sbjct: 642 EEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLF 701

Query: 306 DQMPERD--YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
              PE+   +VL   + + Y     + E   + + M+ SNI+ +
Sbjct: 702 ILEPEKSGTHVL---LANTYASAGMWNEVAKVRKLMKDSNIKKE 742


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/727 (34%), Positives = 393/727 (54%), Gaps = 84/727 (11%)

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF  +P+ +V  W +++ G +    H   + ++  M    + P+ +TF  +L       
Sbjct: 156 EVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQG 215

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A++ G+ +H   +KFG  SSVFV N+L++ Y  CG V+ A+ +F+     D+V+WN + +
Sbjct: 216 ALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMA 275

Query: 190 GYK-------RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           G +        ++ F E+R   G+M       T  T   V+  CA LK L + ++ H  V
Sbjct: 276 GLQLNECELEALQLFHESRATMGKM-------TQSTYATVIKLCANLKQLALARQLHSCV 328

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFG-NIKNKDVISWTAIVTGYINRGQVDMA 301
            +        +  AL D Y+ CGE+  AL IF     +++V+SWTAI++G I  G + +A
Sbjct: 329 LKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388

Query: 302 RQYFDQMPERDYVL------------------------------------WTAMIDGYLR 325
              F +M E D V+                                     TA++  Y +
Sbjct: 389 VVLFSRMRE-DRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSK 447

Query: 326 VNRFREALTLFR-------------------------------EMQTSNIRPDEFTIVSI 354
                +AL++F+                               +M    I+P+EFTI S+
Sbjct: 448 FGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSV 507

Query: 355 LTACANLGA-LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           + ACA   A ++ G        K +  + I V +AL+ MY + G+++ AQ VF     +D
Sbjct: 508 IDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRD 567

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +W +MI G A +G+  K+++ F QM  + I  D VT++ V+  CTH G+V EG++YF 
Sbjct: 568 LVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFD 627

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
            M   H I P   HY CMVDL  RAG L+E + +I++MP    ++VW  LLGACRVH++ 
Sbjct: 628 SMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNV 687

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           E+ + +A ++L L+P + + YVLL NIYAA  +W    E+R+++  R +KK  GCS I++
Sbjct: 688 ELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQI 747

Query: 594 NGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHS 653
              VH F+A DKSHP + +IY KL  + + LK  GY P+ S V  D+ E+ KE  +  HS
Sbjct: 748 KNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHS 807

Query: 654 EKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
           E+LA+AFGLI++ PG  ++IVKNLR+C DCH + K+VSM+ DRE+I+RD +RFHHF  G+
Sbjct: 808 ERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGA 867

Query: 714 CSCKDYW 720
           CSC D+W
Sbjct: 868 CSCGDFW 874



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 158/363 (43%), Gaps = 31/363 (8%)

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233
           ++  +D  V  N +   Y R     E    F    R GVL  S T+  VL          
Sbjct: 57  EIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVL---------- 106

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
                    K C+ VP+ +L   L  +   CG               +V + T++V  Y+
Sbjct: 107 ---------KACRSVPDRVLGEQLHCLCVKCGH-----------DRGEVSAGTSLVDMYM 146

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
             G V    + F+ MP+++ V WT+++ G        E + LF  M+   I P+ FT  S
Sbjct: 147 KCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFAS 206

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L+A A+ GAL+LG+ V     K   ++ +FV N+L++MY KCG VE A+ VF  M  +D
Sbjct: 207 VLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRD 266

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +W  ++ GL +N    ++L +F +         + TY  V+  C +   +   R+  +
Sbjct: 267 MVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHS 326

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
              ++HG          + D   + G L +AL +        N + W A++  C  + D 
Sbjct: 327 -CVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDI 385

Query: 534 EMA 536
            +A
Sbjct: 386 PLA 388



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 113/236 (47%), Gaps = 3/236 (1%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           QIH+Q IK      P V   L+    S+ G  + A  +F+ I +  V  W+ M+  +++ 
Sbjct: 421 QIHAQVIKTNYQHIPFVGTALLA-SYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQA 479

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT-RDIAVEFGKELHCHVLKFGFDSSVFV 152
              +    ++  M    ++P+ +T   ++         V+ G++ H   +K+ +  ++ V
Sbjct: 480 GDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICV 539

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            +AL+S Y   G +D A+ +F+     D+V+WN+M SGY +     +  + F +ME  G+
Sbjct: 540 SSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGI 599

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEM 267
               VT + V+  C     +  G++     V++ KI P +     + D+Y+  G++
Sbjct: 600 QMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKL 655


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/564 (38%), Positives = 351/564 (62%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
           M  +K++H+  +  GL       +K++     ++ D+ +A KVF +I  P+  LWNT+++
Sbjct: 324 MEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLR 383

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
           G ++ D+ K+ ++ Y    +  ++PDN TFPF+LK   +  A + G+++H HV+K GF  
Sbjct: 384 GLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLL 443

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
            +FV N+LI  Y  CG++  AR IFD     DVV+WN++  GY +  +F E   LF  M+
Sbjct: 444 DIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQ 503

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
            + V    VT+V V+SAC  L D  +     RY++   I  ++ L N L D Y   G++ 
Sbjct: 504 AEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQ 563

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A ++F  +K+K+ ++  A++  Y   G +  A++ FDQ+P +D + W++MI  Y + + 
Sbjct: 564 SAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASH 623

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           F ++L LFR+MQ + ++PD   I S+L+ACA+LGAL+LG+W+  Y+ +N +K D  + N+
Sbjct: 624 FSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENS 683

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDM+ KCG +++A +VF EM  KD  +W ++I+GLA NG  D++L++F  ML     P+
Sbjct: 684 LIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPN 743

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
           EVT++GVL AC +  +V EG ++F  M   H +EP   HYGC+V +L RAG L +A   I
Sbjct: 744 EVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFI 803

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
             MP+ P+ +VW  LLGAC+ H +  +AE+A K++ ELDP N   Y+LL NIYA+ +RW 
Sbjct: 804 NEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASADRWS 863

Query: 569 NFRELRQMILDRGIKKTPGCSMIE 592
           +   +RQ + D  ++K+P CS+++
Sbjct: 864 DALNVRQWMADTAVRKSPACSVVD 887



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 205/313 (65%), Gaps = 1/313 (0%)

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           K+V+SW  ++TG+   G+++ AR  FDQMP R+ V WT +IDGY R   + EA+ LFR M
Sbjct: 4   KNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHM 63

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
               I P E T+++++ A +NLG + +GE +  Y  K  + +D  VGN+LID+Y K G V
Sbjct: 64  MAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSV 123

Query: 400 EKAQRVFREML-RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           + + +VF EML R++  +WT++I G A++G   ++L++F++M RA I P+ +T++ V++A
Sbjct: 124 QNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINA 183

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C+H G+V++G  +F  M  ++ I+P   H+GC++D+LGRAG L EA ++I+ +P++ N I
Sbjct: 184 CSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVI 243

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           VW  LLG C  + + EM + A K I +L+ ++   + +L N+     R+ +  + R+++ 
Sbjct: 244 VWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLD 303

Query: 579 DRGIKKTPGCSMI 591
           +R I K PG +++
Sbjct: 304 ERKIVKVPGLALV 316



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/478 (22%), Positives = 211/478 (44%), Gaps = 26/478 (5%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G+++YA  +F ++P  +V  W  +I GY+R   +   V ++  M+   + P   T   ++
Sbjct: 20  GEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVV 79

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDV 181
              +    +  G+ LH + +K G  S   V N+LI  Y   G V  +  +FD +  + ++
Sbjct: 80  PAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNL 139

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR- 240
           V+W ++ SG+       E  +LF EM R G+ P  +T + V++AC+    ++ G    + 
Sbjct: 140 VSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKS 199

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVD 299
            V E  I P +     + DM    G +  A +I   +  + +VI W  ++      G+V+
Sbjct: 200 MVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVE 259

Query: 300 MARQYFDQMP--ER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
           M ++    +   ER    D+ + + +++   R +   +A  L           DE  IV 
Sbjct: 260 MGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLL----------DERKIVK 309

Query: 354 I----LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC-KCGDVEKAQRVFRE 408
           +    L    +   +E  + +  ++  + + N  +  + +I  Y  +  D+  A +VF +
Sbjct: 310 VPGLALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQ 369

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           +     F W  ++ GLA +     ++  + +     + PD +T+  VL AC  T    EG
Sbjct: 370 IESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEG 429

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            +  + + I+ G   +      ++ L    G L  A  +   M +K + + W +L+G 
Sbjct: 430 EQMHSHV-IKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVK-DVVSWNSLIGG 485



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 148/302 (49%), Gaps = 37/302 (12%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           +V   N +I+ +   GE++ AR +FD     +VV+W  +  GY R   + E   LF  M 
Sbjct: 5   NVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMM 64

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
             G+ P+ +T++ V+ A + L  + +G+  H Y  +  I+ +  + N+L D+YA  G + 
Sbjct: 65  AGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQ 124

Query: 269 FALEIFGN-IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
            +L++F   +  ++++SWT+I++G+   G                           L V 
Sbjct: 125 NSLKVFDEMLDRRNLVSWTSIISGFAMHG---------------------------LSV- 156

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVG 386
              EAL LF EM+ + IRP+  T +S++ AC++ G +E G  + K+ + +  +  +I   
Sbjct: 157 ---EALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHF 213

Query: 387 NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH---GDKSLDMFSQMLR 442
             +IDM  + G + +A+++   + +  +   W  ++   +  G    G +++ M S + R
Sbjct: 214 GCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLER 273

Query: 443 AS 444
            S
Sbjct: 274 ES 275


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/595 (40%), Positives = 368/595 (61%), Gaps = 10/595 (1%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYC----LCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           +++H  ++K    +  F  + LI+ +C    + G +D A  +F      +   + A+  G
Sbjct: 23  RQIHAQMIKTNLLNHQFTVSRLIA-FCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKG 81

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSV--TIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           +       E+  L+  M       + V  +I  VL AC KL   D G++ H  V +  + 
Sbjct: 82  FSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLW 141

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            +  + N++  MY   GE+  A  +F  + N+DV+SW +++ GY+  G++++A++ F+ M
Sbjct: 142 FDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETM 201

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
            ++D V WT+MI  Y++     +AL LFREM +  +RPD   IVS+L+A A+LG +E G+
Sbjct: 202 SDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGK 261

Query: 369 WVKTYIDKNKVK-NDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIVGLAI 426
           W+  Y+  NK++ +  F+G+ALIDMY KCG +E A  VFR +  R++   W +MI GLAI
Sbjct: 262 WLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAI 321

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G   ++LD+F +M R  I P+E+T++G+LS C+H G+V+EG+ YF  M  ++ I P   
Sbjct: 322 HGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQ 381

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HYGCM+DL GRAG L +AL VI+NMP + + + W A+L A   H   E+ + AA + +EL
Sbjct: 382 HYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIEL 441

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK- 605
            PD+ + YVLL NIYA   RWD+  ++R M+  RG+KK  GCS + +NG VHEF+ G + 
Sbjct: 442 APDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKEL 501

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
               + ++  K+ E+ S LK  GY PD+++V LD+ +E KE  +  HSEK+A+AFGLI  
Sbjct: 502 DSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHI 561

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
                I IVKNLR+C DCH   KLVS VY+R++I+RD+ RFHHF++G CSC +YW
Sbjct: 562 NKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 227/485 (46%), Gaps = 72/485 (14%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE--KGDMKYAC 69
           T     P++S ++ C+S+ +L+QIH+Q IK  LL +    ++L+ FC      G + YA 
Sbjct: 2   TAISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYAS 61

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK--SDVRPDNYTFPFLLKGFTR 127
            VF +I  P+  ++  +IKG+S   +    +++Y  ML   +      ++ P +LK   +
Sbjct: 62  SVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGK 121

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
            +A + G+++H  VLK       FV N+++  Y   GE+++AR +FD     DVV+WN+M
Sbjct: 122 LLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSM 181

Query: 188 FSGYKRVKQFDETRK-------------------------------LFGEMERKGVLPTS 216
            +GY +  + +  +K                               LF EM   G+ P  
Sbjct: 182 IAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDG 241

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKI-VPNLILENALTDMYAACGEMGFALEIFG 275
             IV VLSA A L  ++ GK  H YV   KI + +  + +AL DMY+ CG +  A  +F 
Sbjct: 242 PAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFR 301

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
           +I ++                              R+   W +MI G       REAL +
Sbjct: 302 SISHR------------------------------RNIGDWNSMISGLAIHGLAREALDI 331

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYC 394
           F EM+  +I P+E T + +L+ C++ G +E G+ + ++  +K K+   I     +ID++ 
Sbjct: 332 FVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFG 391

Query: 395 KCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA-SIIPDEVTY 452
           + G +E A  V + M    D   W A++     +GH +      S  LRA  + PD+ + 
Sbjct: 392 RAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGK---SAALRAIELAPDDSSS 448

Query: 453 VGVLS 457
             +LS
Sbjct: 449 YVLLS 453


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/504 (44%), Positives = 328/504 (65%), Gaps = 8/504 (1%)

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-----HRYVKECKIVPNLILENAL 257
           L+  + R G  PT  T+  +L + A L     G R      H +  +  +   L++ NAL
Sbjct: 193 LYAHLLRAGHHPTPHTLPSLLKSLA-LSPAVPGARGLALAVHAHAVKLGLAGFLLVSNAL 251

Query: 258 TDMYAA-CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
             ++A   G +  AL +     + D  ++  ++T Y   G+V  AR  FD+MP R+ V W
Sbjct: 252 IRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSW 311

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           +AM++GY++    REAL LF  MQ   +RPD+  +V +L ACA LG LE G+WV  Y+  
Sbjct: 312 SAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKA 371

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           N ++  +F+G AL+DMY KCG+++ A  VF+ M  K+   WT MI GLA++G G ++L++
Sbjct: 372 NNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALEL 431

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           FSQM R  + PD++ ++G L ACTHTG+VD+GRE F  M  ++GI+P   HYGCMVDLL 
Sbjct: 432 FSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLA 491

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R G LNEA E+++ MPMKP++++WGAL+  CR H++ E+AE   K  +EL+PD    YVL
Sbjct: 492 RNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVL 551

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L NIYAA  R  + RE+R ++ ++G+ KTPGCS +E+ GV+H+F+ GD SHP  +EI  K
Sbjct: 552 LGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSK 611

Query: 617 LDEMTSDLKF-VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
            DE+ S ++   GY+PD  EV LD+ EE+KE A+ +HSEK+A+AF LI++   + IRIVK
Sbjct: 612 WDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVK 671

Query: 676 NLRMCVDCHRMAKLVSMVYDREVI 699
           NLR+C DCH + KL+S V+D  V+
Sbjct: 672 NLRVCHDCHHVTKLISKVFDLTVV 695



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 165/385 (42%), Gaps = 69/385 (17%)

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           R S  L N +I+  +        + +Y  +L++   P  +T P LLK      AV   + 
Sbjct: 168 RRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARG 227

Query: 137 L----HCHVLKFGFDSSVFVQNALI--------------------------------STY 160
           L    H H +K G    + V NALI                                + Y
Sbjct: 228 LALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAY 287

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
              G V  AR +FD     + V+W+AM +GY +     E   LF  M+  GV P    +V
Sbjct: 288 ARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLV 347

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            VL+ACA+L  L+ GK  H Y+K   I   + L  AL DMYA CGEM  A+E+F  +K K
Sbjct: 348 GVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEK 407

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +V++WT ++ G    G                               R  EAL LF +M+
Sbjct: 408 NVLAWTTMIKGLAMHG-------------------------------RGSEALELFSQME 436

Query: 341 TSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
              ++PD+   +  L AC + G ++ G E   + + K  +K  I     ++D+  + G +
Sbjct: 437 RLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLL 496

Query: 400 EKAQRVFREM-LRKDKFTWTAMIVG 423
            +A+ +  +M ++ D   W A++ G
Sbjct: 497 NEAREMVEKMPMKPDALIWGALMAG 521



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 9/295 (3%)

Query: 52  NKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV 111
           N L+T   +  G +  A  +F ++P  +   W+ M+ GY +    +  + ++  M    V
Sbjct: 281 NTLIT-AYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGV 339

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
           RPD+     +L    +   +E GK +H ++       +VF+  AL+  Y  CGE+ +A  
Sbjct: 340 RPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAME 399

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +F V  + +V+ W  M  G     +  E  +LF +MER GV P  +  +  L AC     
Sbjct: 400 VFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGL 459

Query: 232 LDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIV 289
           +D G+      V++  I P +     + D+ A  G +  A E+   +  K D + W A++
Sbjct: 460 VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALM 519

Query: 290 TGYINRGQVDMA----RQYFDQMPERD--YVLWTAMIDGYLRVNRFREALTLFRE 338
            G      V++A    + + +  P++   YVL   +     R    RE   L RE
Sbjct: 520 AGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMRE 574


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/730 (33%), Positives = 403/730 (55%), Gaps = 48/730 (6%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVT----FCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
           Q H++ +K G   +  +  KL+     + C    D+     + + IP P+V  ++++I  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADL-----ILQSIPDPTVYSFSSLIYA 90

Query: 90  YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
            ++       + ++  M    + PD +  P L K      A + GK++HC     G D  
Sbjct: 91  LTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMD 150

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
            FVQ +L   Y  CG +  AR +FD   + DVVT +A+  GY R    +E  ++  EME+
Sbjct: 151 AFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEK 210

Query: 210 KGV-----------------------------------LPTSVTIVLVLSACAKLKDLDV 234
            G+                                    P  VT+  VL +    ++L++
Sbjct: 211 SGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNM 270

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G++ H YV +  ++ +  + +A+ DMY   G +   +++F   +  +     A +TG   
Sbjct: 271 GRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSR 330

Query: 295 RGQVDMARQYF----DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
            G VD A + F    +Q  E + V WT++I G  +  +  EAL LFREMQ + ++P+  T
Sbjct: 331 NGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVT 390

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           I S+L AC N+ AL  G     +  +  + +D+ VG+ALIDMY KCG ++ +Q VF  M 
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMP 450

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            K+   W +++ G +++G   + + +F  ++R  + PD +++  +LSAC   G+ DEG +
Sbjct: 451 TKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK 510

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           YF  M+ ++GI+P   HY CMV+LLGRAG L EA ++IK +P +P+S VWGALL +CR+ 
Sbjct: 511 YFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQ 570

Query: 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590
            + ++AE+AA+++  L+P+N   YVL+ NIYAA   W     +R  +   G+KK PGCS 
Sbjct: 571 NNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630

Query: 591 IEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVY 650
           I++   V+  +A DKSHPQ  +I  K+DE++ +++  G+ P++     DV E+++E+ ++
Sbjct: 631 IQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLW 690

Query: 651 QHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFK 710
            HSEKLA+ FGL+++  G  ++++KNLR+C DCH + K +S    RE+ +RD  RFHHFK
Sbjct: 691 GHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFK 750

Query: 711 HGSCSCKDYW 720
            G CSC D+W
Sbjct: 751 DGICSCGDFW 760



 Score = 40.8 bits (94), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/178 (19%), Positives = 81/178 (45%), Gaps = 7/178 (3%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +  H   +++ LL +  V + L+    ++ G +K +  VF  +P  ++  WN+++ GYS 
Sbjct: 408 RSTHGFAVRVHLLDDVHVGSALIDMY-AKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSM 466

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVF 151
               K  + I+  ++++ ++PD  +F  LL    +  +  E  K  +    ++G    + 
Sbjct: 467 HGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLE 526

Query: 152 VQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVKQFD----ETRKLF 204
             + +++     G++  A  +  ++ ++ D   W A+ +  +     D      +KLF
Sbjct: 527 HYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLF 584


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/664 (36%), Positives = 377/664 (56%), Gaps = 10/664 (1%)

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           C E  D ++   +F K+    +  W  MI GY+        ++++  M +  V PD    
Sbjct: 206 CREIEDARF---LFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAM 262

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             ++    +  A+   + +  ++ +  F   V +  A+I  Y  CG V+ AR IFD   +
Sbjct: 263 VTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE 322

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            +V++W+AM + Y    Q  +   LF  M   G+LP  +T+  +L AC   ++L   ++ 
Sbjct: 323 KNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQV 382

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H       ++ NLI+ N L   Y+    +  A  +F  +  +D +SW+ +V G+   G  
Sbjct: 383 HAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDY 442

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLR--VNRFREALTLFREMQTSNIRPDEFTIVSILT 356
                 F     R+ +   A  D Y         E+L LF +M+   + PD+  +V+++ 
Sbjct: 443 MNCFGTF-----RELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVF 497

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           ACA LGA+     +  YI + K + D+ +G A+IDM+ KCG VE A+ +F  M  K+  +
Sbjct: 498 ACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS 557

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W+AMI     +G G K+LD+F  MLR+ I+P+++T V +L AC+H G+V+EG  +F+ M 
Sbjct: 558 WSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMW 617

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
             + +  +  HY C+VDLLGRAG L+EAL++I++M ++ +  +WGA LGACR H+D  +A
Sbjct: 618 EDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLA 677

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           E AA  +LEL P N   Y+LL NIYA   RW++  + R ++  R +KK PG + IE++  
Sbjct: 678 EKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNK 737

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKL 656
            H+F  GD +HP++KEIY  L  + + L+ VGY+PD + V  DV EE K   +Y HSEKL
Sbjct: 738 SHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKL 797

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           A+AFGLI++     IRI+KNLR+C DCH   KLVS +  R +IVRD  RFHHFK G+CSC
Sbjct: 798 AIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSC 857

Query: 717 KDYW 720
            DYW
Sbjct: 858 GDYW 861



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 149/548 (27%), Positives = 244/548 (44%), Gaps = 89/548 (16%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           IS +  C ++ Q++Q+H+Q    G+L N  V NKL+ F    +  +  A  +F  +    
Sbjct: 85  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRA-LDDAYGLFDGMCVRD 143

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
              W+ M+ G++++  + N    + ++++   RPDNYT PF+++               C
Sbjct: 144 SVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA--------------C 189

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
             LK        +Q AL+  Y  C E++ AR +FD   + D+VTW  M  GY    + +E
Sbjct: 190 RDLKN-------LQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANE 242

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
           +  LF +M  +GV+P  V +V V+ ACAKL  +   +    Y++  K   ++IL  A+ D
Sbjct: 243 SLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMID 302

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA CG +  A EIF  ++ K+VISW+A++  Y   GQ                      
Sbjct: 303 MYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ---------------------- 340

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
                     R+AL LFR M +S + PD+ T+ S+L AC N   L     V      + +
Sbjct: 341 ---------GRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGM 391

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA-------------- 425
             ++ V N L+  Y     ++ A  +F  M  +D  +W+ M+ G A              
Sbjct: 392 LQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRE 451

Query: 426 --------------INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR-- 469
                           G+ ++SL +F +M    ++PD+V  V V+ AC   G + + R  
Sbjct: 452 LIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTI 511

Query: 470 -EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
            +Y      Q  +    A    M+D+  + G +  A E+   M  K N I W A++ A  
Sbjct: 512 DDYIQRKKFQLDVILGTA----MIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYG 566

Query: 529 VHRDAEMA 536
            H     A
Sbjct: 567 YHGQGRKA 574



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 164/389 (42%), Gaps = 68/389 (17%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           SS   P  +T  + L + I  C ++ Q++Q+H+Q    G+L N  V NKLV F    +  
Sbjct: 353 SSGMLPDKITLASLLYACI-NCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRA- 410

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL--- 121
           +  A  +F  +       W+ M+ G++++  + N    + ++++   RPDNYT PF    
Sbjct: 411 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNA 470

Query: 122 -----------LKGFTRD----IAVEF----------GKELHCHVLKFGFDSSVFVQNAL 156
                       +G   D    + V F           + +  ++ +  F   V +  A+
Sbjct: 471 NESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAM 530

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           I  +  CG V+ AR IFD   + +V++W+AM + Y    Q  +   LF  M R G+LP  
Sbjct: 531 IDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNK 590

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
           +T+V +L AC+    ++ G R                               F+L     
Sbjct: 591 ITLVSLLYACSHAGLVEEGLRF------------------------------FSLMWEDY 620

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMP-ERDYVLWTAMIDGYLRVNR----FRE 331
               DV  +T +V      G++D A +  + M  E+D  LW A + G  R ++      +
Sbjct: 621 SVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFL-GACRTHKDVVLAEK 679

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACAN 360
           A T   E+Q  N  P  + ++S + A A 
Sbjct: 680 AATSLLELQPQN--PGHYILLSNIYANAG 706


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/688 (34%), Positives = 373/688 (54%), Gaps = 32/688 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H+  +++G   +    N LV     + G +  A  +F K+P   V  WN +I G   
Sbjct: 222 RQVHAMVVRMGYEKDVFTANALVDMYV-KMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  + + L M  S + P+ +    +LK      A + G+++H  ++K   DS  ++
Sbjct: 281 NGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYI 340

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
              L+  Y     +D A  +FD     D++ WNA+ SG     + DE   +F  + ++G+
Sbjct: 341 GVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGL 400

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
                T+  VL + A L+     ++ H   ++   + +  + N L D Y  C  +  A+ 
Sbjct: 401 GVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIR 460

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F    + D+I+ T+                               MI    + +    A
Sbjct: 461 VFEECSSGDIIAVTS-------------------------------MITALSQCDHGEGA 489

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           + LF EM    + PD F + S+L ACA+L A E G+ V  ++ K +  +D F GNAL+  
Sbjct: 490 IKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYT 549

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG +E A+  F  +  +   +W+AMI GLA +GHG ++L++F +M+   I P+ +T 
Sbjct: 550 YAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITM 609

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
             VL AC H G+VDE + YF  M    GI+  E HY CM+DLLGRAG L++A+E++ +MP
Sbjct: 610 TSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMP 669

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            + N+ VWGALLGA RVH+D E+ ++AA+++  L+P+    +VLL N YA+   W+   +
Sbjct: 670 FQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAK 729

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R+++ D  IKK P  S +E+   VH F+ GDKSHP TKEIY KLDE+   +   GY+P+
Sbjct: 730 VRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPN 789

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
           +     D+   +KE  +  HSE+LA+AF L+S+ PG  IR+ KNLR+C DCH   K +S 
Sbjct: 790 VDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISN 849

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  RE+I+RD  RFHHF+ G+CSC DYW
Sbjct: 850 IVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 206/448 (45%), Gaps = 52/448 (11%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTF-------CCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
            +H+  +K G L   +++N L++F       CC+ +        VF +IP P    W+++
Sbjct: 25  HLHANLLKSGFLA--SLRNHLISFYSKCRRPCCARR--------VFDEIPDPCHVSWSSL 74

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           +  YS     ++ +  +  M    V  + +  P +LK        + G ++H   +  GF
Sbjct: 75  VTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---AQLGAQVHAMAMATGF 131

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
            S VFV NAL++ Y   G +D AR +FD    + + V+WN + S Y +  Q  +  ++FG
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           EM   G+ PT      V++AC   +++D G++ H  V       ++   NAL DMY   G
Sbjct: 192 EMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMG 251

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            +  A  IF  + + DV+SW A+++G +  G               D+            
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGH--------------DH------------ 285

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
                 A+ L  +M++S + P+ F + SIL ACA  GA +LG  +  ++ K    +D ++
Sbjct: 286 -----RAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYI 340

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
           G  L+DMY K   ++ A +VF  M  +D   W A+I G +  G  D++  +F  + +  +
Sbjct: 341 GVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGL 400

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +  T   VL +          R+  A
Sbjct: 401 GVNRTTLAAVLKSTASLEAASATRQVHA 428



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 180/395 (45%), Gaps = 39/395 (9%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G  LH ++LK GF +S+  +N LIS Y  C     AR +FD       V+W+++ + Y  
Sbjct: 23  GAHLHANLLKSGFLASL--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                   + F  M  +GV      + +VL     + D  +G + H          ++ +
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFV 137

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM-PERD 312
            NAL  MY   G  GF                            +D AR+ FD+   ER+
Sbjct: 138 ANALVAMY---GGFGF----------------------------MDDARRVFDEAGSERN 166

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W  ++  Y++ ++  +A+ +F EM  S I+P EF    ++ AC     ++ G  V  
Sbjct: 167 AVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHA 226

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            + +   + D+F  NAL+DMY K G V+ A  +F +M   D  +W A+I G  +NGH  +
Sbjct: 227 MVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 286

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           ++++  QM  + ++P+      +L AC   G  D GR+    M   +    +    G +V
Sbjct: 287 AIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG-LV 345

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
           D+  +   L++A++V   M  + + I+W AL+  C
Sbjct: 346 DMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGC 379


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/674 (35%), Positives = 391/674 (58%), Gaps = 16/674 (2%)

Query: 60  SEKGDMKYACKVFRKIP-----RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPD 114
           ++ G  + A K F ++      +P+V  W  +I G  +       + ++  M+   V+P+
Sbjct: 302 AQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPN 361

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIF 173
           + T    +   T    +  G+E+H + +K    DS + V N+L+  Y  C  V++AR  F
Sbjct: 362 SITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKF 421

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233
            +  + D+V+WNAM +GY      +E  +L  EM+ +G+ P  +T   +++   +  D  
Sbjct: 422 GMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGK 481

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGE---MGFALEIFGNI-KNKDVIS---WT 286
                 + +    + PN      ++   AACG+   +    EI G + +N   +S    +
Sbjct: 482 AALEFFQRMHSMGMDPN---TTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGS 538

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
           A+++ Y     +++A   F ++  RD V+W ++I    +  R   AL L REM  SN+  
Sbjct: 539 ALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEV 598

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           +  T+VS L AC+ L AL  G+ +  +I +  +    F+ N+LIDMY +CG ++K++R+F
Sbjct: 599 NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF 658

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
             M ++D  +W  MI    ++G G  ++++F Q     + P+ +T+  +LSAC+H+G+++
Sbjct: 659 DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIE 718

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           EG +YF  M  ++ ++P    Y CMVDLL RAG  NE LE I+ MP +PN+ VWG+LLGA
Sbjct: 719 EGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 778

Query: 527 CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTP 586
           CR+H + ++AE AA+ + EL+P +   YVL+ NIY+A  RW++  ++R ++ +RG+ K P
Sbjct: 779 CRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPP 838

Query: 587 GCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKE 646
           GCS IE+   +H FV GD SHP  ++I  K++ +  D+K +GY+PD + V  DV E++KE
Sbjct: 839 GCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKE 898

Query: 647 RAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRF 706
            ++  HSEK+A+AFGLIS+  G  +RI+KNLR+C DCH   K +S V  R++I+RD  RF
Sbjct: 899 FSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRF 958

Query: 707 HHFKHGSCSCKDYW 720
           HHF  G CSC DYW
Sbjct: 959 HHFVDGVCSCGDYW 972



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 155/573 (27%), Positives = 259/573 (45%), Gaps = 59/573 (10%)

Query: 87  IKGYSRIDS-HKNGVLIYLDMLKSDV---RPDN--YTFPFLLKGFTRDIAVEFGKELHCH 140
           I G+S   S H+NGVL    ML S +    PD     +  +L+   +   +  G ++H  
Sbjct: 55  ITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQ 114

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           ++  G D   F+ + L+  YC  G V+ AR +FD   + +V +W A+   Y  +  ++ET
Sbjct: 115 LVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEET 174

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
            KLF  M  +GV P       V  AC++LK+  VGK  + Y+       N  ++ ++ DM
Sbjct: 175 IKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDM 234

Query: 261 YAACGEMGFALEIFGNIKNKDV-----------------------------------ISW 285
           +  CG M  A   F  I+ KDV                                   ++W
Sbjct: 235 FIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW 294

Query: 286 TAIVTGYINRGQVDMARQYFDQMP-----ERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
            AI++GY   GQ + A +YF +M      + + V WTA+I G  +     EAL++FR+M 
Sbjct: 295 NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMV 354

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTY-IDKNKVKNDIFVGNALIDMYCKCGDV 399
              ++P+  TI S ++AC NL  L  G  +  Y I   ++ +D+ VGN+L+D Y KC  V
Sbjct: 355 LEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSV 414

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           E A+R F  + + D  +W AM+ G A+ G  ++++++ S+M    I PD +T+ G+++  
Sbjct: 415 EVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGF 474

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           T  G      E+F  M    G++PN       +   G+  +L    E+   +      + 
Sbjct: 475 TQYGDGKAALEFFQRMH-SMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELS 533

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE-LRQMIL 578
            G       ++   +  E+A     EL   +  V+  + +  A   R  N  + LR+M L
Sbjct: 534 TGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNL 593

Query: 579 DR-------GIKKTPGCS---MIEMNGVVHEFV 601
                     +   P CS    +     +H+F+
Sbjct: 594 SNVEVNTVTMVSALPACSKLAALRQGKEIHQFI 626



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 154/642 (23%), Positives = 284/642 (44%), Gaps = 95/642 (14%)

Query: 21  SPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S ++ C  ++ L+   Q+H+Q +  G+     + ++L+   C + G ++ A ++F K+  
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYC-QTGCVEDARRMFDKMSE 152

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            +V  W  +++ Y  +  ++  + ++  M+   VRPD++ FP + K  +       GK++
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           + ++L  GF+ +  V+ +++  +  CG +D+AR  F+     DV  WN M SGY    +F
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF 272

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAK----------------LKD---------- 231
            +  K   +M+  GV P  VT   ++S  A+                LKD          
Sbjct: 273 KKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTA 332

Query: 232 LDVGKRAHRYVKEC-KIVPNLILE----NALT--DMYAACGEMGF---ALEIFGN-IK-- 278
           L  G   + Y  E   +   ++LE    N++T     +AC  +       EI G  IK  
Sbjct: 333 LIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVE 392

Query: 279 --NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
             + D++   ++V  Y     V++AR+ F  + + D V W AM+ GY       EA+ L 
Sbjct: 393 ELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELL 452

Query: 337 REMQTSNIRPD---------------------EF--------------TIVSILTACANL 361
            EM+   I PD                     EF              TI   L AC  +
Sbjct: 453 SEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQV 512

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
             L+LG+ +  Y+ +N ++    VG+ALI MY  C  +E A  VF E+  +D   W ++I
Sbjct: 513 RNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSII 572

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
              A +G    +LD+  +M  +++  + VT V  L AC+    + +G+E      I+ G+
Sbjct: 573 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE-IHQFIIRCGL 631

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           +        ++D+ GR G + ++  +   MP + + + W  ++    +H     A    +
Sbjct: 632 DTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR-DLVSWNVMISVYGMHGFGMDAVNLFQ 690

Query: 542 QI--LELDPDNEAVYVLLCNIYAACNR-------WDNFRELR 574
           Q   + L P+    ++   N+ +AC+        W  F+ ++
Sbjct: 691 QFRTMGLKPN----HITFTNLLSACSHSGLIEEGWKYFKMMK 728



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 182/406 (44%), Gaps = 30/406 (7%)

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           Y   G V+ AR+ FD+M ER+   WTA+++ Y  +  + E + LF  M    +RPD F  
Sbjct: 134 YCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVF 193

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
             +  AC+ L    +G+ V  Y+     + +  V  +++DM+ KCG ++ A+R F E+  
Sbjct: 194 PKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF 253

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           KD F W  M+ G    G   K+L   S M  + + PD+VT+  ++S    +G  +E  +Y
Sbjct: 254 KDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKY 313

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM---KPNSIVWGALLGAC- 527
           F +M      +PN   +  ++    + G+  EAL V + M +   KPNSI   + + AC 
Sbjct: 314 FLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACT 373

Query: 528 --RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
              + R          ++ ELD D   V   L + YA C   +  R    M     IK+T
Sbjct: 374 NLSLLRHGREIHGYCIKVEELDSD-LLVGNSLVDYYAKCRSVEVARRKFGM-----IKQT 427

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI------SEVFLD 639
               ++  N ++  + A   SH +         E+ S++KF G  PDI         F  
Sbjct: 428 ---DLVSWNAMLAGY-ALRGSHEEAI-------ELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 640 VGEEDKERAVYQHSEKLAMAFGLIS-SGPGVTIRIVKNLRMCVDCH 684
            G+       +Q    + M     + SG       V+NL++  + H
Sbjct: 477 YGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIH 522


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/688 (37%), Positives = 378/688 (54%), Gaps = 39/688 (5%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS-------------------------RID 94
           S  G +  A  +FR IPRP    +NT++   +                          I 
Sbjct: 80  SANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMIS 139

Query: 95  SHKNGVLIYLDMLKSDVRP--DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
           SH N  L+ L     D+ P  D  ++  +L  + R+  VE  + L     ++        
Sbjct: 140 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DAIS 195

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL+S Y   G++  AR +FD     DVV+WN M SGY R     E R+LF     + V
Sbjct: 196 WNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV 255

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
                T   V+S  A+   L+  +R    + E     N +  NA+   Y     M  A E
Sbjct: 256 F----TWTAVVSGYAQNGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMDEAKE 307

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  +  ++V SW  ++TGY   G ++ A+  FD MP++D V W AM+  Y +     E 
Sbjct: 308 LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L LF EM       +      +L+ CA++ ALE G  +   + +       FVGNAL+ M
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 427

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG++E A+  F EM  +D  +W  MI G A +G G ++L++F  M   S  PD++T 
Sbjct: 428 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           VGVL+AC+H+G+V++G  YF  M    G+     HY CM+DLLGRAG L EA +++K+MP
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            +P+S +WGALLGA R+HR+ E+   AA++I EL+P+N  +YVLL NIYA+  +W + R+
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 607

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R M+ +RG+KK PG S IE+   VH F AGD  HP+ ++IY  L+++   +K  GY+  
Sbjct: 608 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSA 667

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
              V  DV EE+KE  +  HSEKLA+A+G+++  PG  IR++KNLR+C DCH   K +S 
Sbjct: 668 TDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISA 727

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  R +++RD  RFHHF+ GSCSC DYW
Sbjct: 728 IEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 159/381 (41%), Gaps = 57/381 (14%)

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
            +  V   N  I+ +   G V  A  +F    +    T+NAM +GY              
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYS------------- 80

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
                G LP + ++   +                         P+    N L    A   
Sbjct: 81  ---ANGRLPLAASLFRAIPR-----------------------PDNYSYNTLLHALAVSS 114

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            +  A  +F  +  +D +++  +++ + N G V +AR YFD  PE+D V W  M+  Y+R
Sbjct: 115 SLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVR 174

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
             R  EA  LF     S    D  +  ++++     G +      +   D+   + D+  
Sbjct: 175 NGRVEEARGLF----NSRTEWDAISWNALMSGYVQWGKMSE---ARELFDRMPGR-DVVS 226

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            N ++  Y + GD+ +A+R+F     +D FTWTA++ G A NG  +++  +F  M     
Sbjct: 227 WNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER-- 284

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
             + V++  +++A     M+DE +E F  M  +     N A +  M+    +AG L EA 
Sbjct: 285 --NAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAK 337

Query: 506 EVIKNMPMKPNSIVWGALLGA 526
            V   MP K +++ W A+L A
Sbjct: 338 AVFDTMPQK-DAVSWAAMLAA 357



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 10/149 (6%)

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
           +++ ++   N  I  + + G V  A+R+F  M R+   T+ AM+ G + NG     L + 
Sbjct: 33  RLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGR----LPLA 88

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           + + RA   PD  +Y  +L A   +  + + R  F +M ++  +      Y  M+     
Sbjct: 89  ASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHAN 143

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            G ++ A       P K +++ W  +L A
Sbjct: 144 HGLVSLARHYFDLAPEK-DAVSWNGMLAA 171


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/646 (38%), Positives = 380/646 (58%), Gaps = 20/646 (3%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WNTMI    +    +  V +  DM+   VRPD  TF   L   +R   +  G+E+H  VL
Sbjct: 228 WNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVL 287

Query: 143 KFG-FDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYKRVKQFDE 199
           K     ++ FV +AL+  Y    +V  AR +FD+   +   +  WNAM  GY +    DE
Sbjct: 288 KDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDE 347

Query: 200 TR-KLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNLILENA 256
              +LF  ME + G  P+  T+  VL ACA+  ++  GK A H YV +  +  N  ++NA
Sbjct: 348 EAIELFSRMEAEAGCAPSETTMAGVLPACAR-SEVFTGKEAVHGYVVKRDMASNRFVQNA 406

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L DMYA  G M  A  IF  I  +D++SW  ++TG I +G +  A Q   +M      L 
Sbjct: 407 LMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQ-----LP 461

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           ++   G   +     ++   R M      P+  T++++L  CA L A   G+ +  Y  +
Sbjct: 462 SSAASGETMLEGDDTSVDGQRCM------PNNITLMTLLPGCAVLAAPARGKEIHGYAVR 515

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           + +++D+ VG+AL+DMY KCG +  A+ VF  + R++  TW  +I+   ++G GD++L +
Sbjct: 516 HALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALAL 575

Query: 437 FSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           F +M+      P+EVT++  L+AC+H+G+VD G E F  M   +G EP    + C+VD+L
Sbjct: 576 FDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVL 635

Query: 496 GRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           GRAG L+EA  +I +M P +     W  +LGACR+HR+ ++  +AA+++ EL+PD  + Y
Sbjct: 636 GRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHY 695

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLLCNIY+A   W+N  E+R M+  RG+ K PGCS IE++G +H F+AG+ +HP++ +++
Sbjct: 696 VLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVH 755

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             +D +   ++  GY+PD S V  DV E +K   +  HSEKLA+AFGL+ + PG TIR+ 
Sbjct: 756 AHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVA 815

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+C DCH  AK +S +  RE+++RD  RFHHF+ G+CSC DYW
Sbjct: 816 KNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 101/463 (21%), Positives = 187/463 (40%), Gaps = 64/463 (13%)

Query: 21  SPIETCESMHQL---KQIHSQTIKLG-LLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           S +  C  +  L   +++H+  +K   L  N  V + LV    S +  + +A +VF  +P
Sbjct: 265 SALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNE-QVSHARRVFDMVP 323

Query: 77  RPS--VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV--RPDNYTFPFLLKGFTRDIAVE 132
                + +WN MI GY++        +     ++++    P   T   +L    R     
Sbjct: 324 EHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFT 383

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
             + +H +V+K    S+ FVQNAL+  Y   G +D A  IF +    D+V+WN + +G  
Sbjct: 384 GKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCI 443

Query: 193 RVKQFDETRKLFGEME--------------------RKGVLPTSVTIVLVLSACAKLKDL 232
                 E  +L  EM+                     +  +P ++T++ +L  CA L   
Sbjct: 444 VQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAP 503

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
             GK  H Y     +  +L + +AL DMYA CG +  A  +F  +  ++VI+W  ++  Y
Sbjct: 504 ARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAY 563

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G  D A   FD+M                              +      P+E T +
Sbjct: 564 GMHGLGDEALALFDRM------------------------------VANGEATPNEVTFI 593

Query: 353 SILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           + L AC++ G ++ G E  +        +   ++   ++D+  + G +++A  +   M  
Sbjct: 594 AALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAP 653

Query: 412 KDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
            +     W+ M+    +  H +  L   +      + PDE ++
Sbjct: 654 GEHQVSAWSTMLGACRL--HRNVKLGRIAAERLFELEPDEASH 694


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/590 (40%), Positives = 342/590 (57%), Gaps = 32/590 (5%)

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           V  G+ +H   +K          N L+  Y  CG +D A  +FD+     VVTW ++ + 
Sbjct: 14  VSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAA 73

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y R    DE  +LF EM+R+GV P   TI  VL ACA    L+ GK  H Y++E  +  N
Sbjct: 74  YAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSN 133

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           + + NAL DMYA CG M                               + A   F +MP 
Sbjct: 134 IFVCNALMDMYAKCGSM-------------------------------EDANSVFLEMPV 162

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           +D + W  MI GY + +   EAL+LF +M    ++PD  T+  IL ACA+L +L+ G+ V
Sbjct: 163 KDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKEV 221

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             +I +N   +D  V NAL+DMY KCG    A+ +F  +  KD  TWT MI G  ++G G
Sbjct: 222 HGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFG 281

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           + ++  F++M +A I PDEV+++ +L AC+H+G++DEG  +F  M  +  ++P   HY C
Sbjct: 282 NNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYAC 341

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           +VDLL R+G L  A + IK+MP++P++ +WGALL  CR+H D ++AE  A+ + EL+P+N
Sbjct: 342 IVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPEN 401

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              YVLL N YA   +W+  ++LRQ I  RG+KK PGCS IE+   VH F+AG+ SHPQ 
Sbjct: 402 TGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQA 461

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
           K+I + L  + S +K  GY P      ++     KE A+  HSEKLAMAFG+++  P  T
Sbjct: 462 KKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPART 521

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IR+ KNLR+C DCH MAK +S    RE+++RD  RFHHFK G C C+ +W
Sbjct: 522 IRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 190/414 (45%), Gaps = 38/414 (9%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           ++S ++ C +   +   + +H   +K  +    T  N L+    ++ G +  A  VF  +
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMY-AKCGVLDGAILVFDLM 59

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              +V  W ++I  Y+R       + ++ +M +  V PD +T   +L     + ++E GK
Sbjct: 60  SVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGK 119

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H ++ +    S++FV NAL+  Y  CG ++ A  +F      D+++WN M  GY +  
Sbjct: 120 DVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNS 179

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
             +E   LFG+M  + + P   T+  +L ACA L  LD GK  H ++       +  + N
Sbjct: 180 LPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVAN 238

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           AL DMY  CG    A  +F  I  KD+I+WT ++ GY   G  +                
Sbjct: 239 ALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGN---------------- 282

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYI 374
                           A+T F EM+ + I PDE + +SIL AC++ G L+ G  +     
Sbjct: 283 ---------------NAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQ 327

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
           D+  VK  +     ++D+  + G +  A +  + M +  D   W A++ G  I+
Sbjct: 328 DECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIH 381


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/593 (39%), Positives = 352/593 (59%), Gaps = 33/593 (5%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A+  G+ +H H++K  ++  V+++  LI  Y  C  +  AR + D   + +VV+W AM S
Sbjct: 25  AIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMIS 84

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY +     E   LF EM   G  P   T   VL++C       +G++ H  V +     
Sbjct: 85  GYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFES 144

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ + ++L DMYA  G                               ++  AR+ FD +P
Sbjct: 145 HIFVGSSLLDMYAKAG-------------------------------KICEARRVFDGLP 173

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ERD V  TA+I GY ++    EAL LFR +Q   +R +  T  S+LTA + L AL+ G  
Sbjct: 174 ERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQ 233

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           V +++ + K+   + + N+LIDMY KCG +  ++R+F  M  +   +W AM+VG + +G 
Sbjct: 234 VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGL 293

Query: 430 GDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDEGREYFADMTIQH-GIEPNEAH 487
           G +++++F  M   + + PD VT++ VLS C+H GM D G E F +M  Q  G EP   H
Sbjct: 294 GREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEH 353

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           YGC+VDL GRAG + EA E IK MP +P + +WG+LLGACRVH++  + E  A+++LE++
Sbjct: 354 YGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIE 413

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
            +N   YV+L N+YA+  RWD+ R +R+++ ++ + K PG S IE++  +H F A D+SH
Sbjct: 414 SENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSH 473

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P+ +E++ K+ E++  +K  GY+P++S V  DV +E KE+ +  HSEKLA+AFGLI +  
Sbjct: 474 PRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPG 533

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G  +RI+KNLR+CVDCH  AK +S VY REV +RDK RFHH   G+CSC DYW
Sbjct: 534 GTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 201/401 (50%), Gaps = 43/401 (10%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNT 85
           ++ + +++H+  IK        ++ +L+     C   GD +   +V  ++P  +V  W  
Sbjct: 25  AIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDAR---RVLDEMPERNVVSWTA 81

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           MI GYS+       + ++++ML S   P+ +TF  +L   T     + G+++H  V+K  
Sbjct: 82  MISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTS 141

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           F+S +FV ++L+  Y   G++  AR +FD   + DVV+  A+ SGY ++   +E   LF 
Sbjct: 142 FESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFR 201

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
            ++R+G+    VT   VL+A + L  LD G++ H +V   K+   ++L+N+L DMY+ CG
Sbjct: 202 RLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCG 261

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            + ++  IF ++  + VISW A++ GY   G                             
Sbjct: 262 SLTYSRRIFDSMPERTVISWNAMLVGYSKHGLG--------------------------- 294

Query: 326 VNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGE--WVKTYIDKNKVKND 382
               REA+ LF+ M+  N ++PD  T +++L+ C++ G  + G   + +    K+  + +
Sbjct: 295 ----REAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPE 350

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           I     ++D++ + G VE+A     E ++K  F  TA I G
Sbjct: 351 IEHYGCVVDLFGRAGRVEEA----FEFIKKMPFEPTAAIWG 387



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 41/307 (13%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           VL+ C     +  G+R H ++ +    P + L   L  +Y  C  +G A  +   +  ++
Sbjct: 16  VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 75

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V+SWTA+++GY  RG                                  EAL LF EM  
Sbjct: 76  VVSWTAMISGYSQRGYAS-------------------------------EALHLFVEMLM 104

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
           S   P+EFT  ++LT+C +    +LG  + + + K   ++ IFVG++L+DMY K G + +
Sbjct: 105 SGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICE 164

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A+RVF  +  +D  + TA+I G A  G  +++LD+F ++ R  +  + VTY  VL+A + 
Sbjct: 165 ARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSG 224

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHY----GCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
              +D GR+  +     H +      Y      ++D+  + G L  +  +  +MP +   
Sbjct: 225 LAALDHGRQVHS-----HVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER-TV 278

Query: 518 IVWGALL 524
           I W A+L
Sbjct: 279 ISWNAML 285



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 108/226 (47%), Gaps = 1/226 (0%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           S+LT C +  A+  G+ V  ++ K   +  +++   LI +Y KC  +  A+RV  EM  +
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 74

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           +  +WTAMI G +  G+  ++L +F +ML +   P+E T+  VL++CT +     GR+  
Sbjct: 75  NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 134

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
           + + I+   E +      ++D+  +AG + EA  V   +P +        + G  ++  D
Sbjct: 135 S-LVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLD 193

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
            E  ++  +   E    N   Y  +    +     D+ R++   +L
Sbjct: 194 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL 239


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/762 (33%), Positives = 404/762 (53%), Gaps = 81/762 (10%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H Q +K GL+ + +V   LV      + ++    +VF ++   +V  W +++ GYS 
Sbjct: 113 RQVHCQCVKFGLVDHVSVGTSLVDMYMKTE-NVNDGRRVFDEMGERNVVSWTSLLAGYSW 171

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              +     ++  M    V P+ YT   ++     +  V  G ++H  V+K GF+ ++ V
Sbjct: 172 NGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPV 231

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            N+LIS Y   G +  AR +FD     D VTWN+M +GY R  Q  E  ++F +M+  GV
Sbjct: 232 FNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGV 291

Query: 213 LPT-----------------------------------SVTIVLVLSACAKLKDLDVGKR 237
            PT                                    + I  ++ A +K K++D    
Sbjct: 292 KPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALS 351

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGF---ALEIFGNIKNKDV----ISWTAIVT 290
               ++E K V       + T M + C + G    A+ +F  ++ + V     +++AI+T
Sbjct: 352 LFSLMEEGKNVV------SWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405

Query: 291 -------------------------------GYINRGQVDMARQYFDQMPERDYVLWTAM 319
                                           Y+  G    A + F+ +  +D + W+AM
Sbjct: 406 VHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAM 465

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN-LGALELGEWVKTYIDKNK 378
           + GY +     EA  LF ++    I+P+EFT  S++ ACA+   A E G+    Y  K +
Sbjct: 466 LAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMR 525

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           + N + V +AL+ MY K G+++ A  VF+    +D  +W +MI G + +G   K+L++F 
Sbjct: 526 LNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFD 585

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M + ++  D VT++GV++ACTH G+V++G++YF  M   H I P   HY CM+DL  RA
Sbjct: 586 EMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRA 645

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G L +A+ +I  MP  P + VW  LLGA RVHR+ E+ E+AA++++ L P++ A YVLL 
Sbjct: 646 GMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLS 705

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           N+YAA   W     +R+++  R +KK PG S IE+    + F+AGD +HP + +IY KL 
Sbjct: 706 NMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLS 765

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
           E++  LK  GY PD   VF D+ +E KE  +  HSE+LA+AFGLI++ P + I+IVKNLR
Sbjct: 766 ELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLR 825

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C DCH   KLVS+V  R ++VRD  RFHHFK G CSC DYW
Sbjct: 826 VCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 234/500 (46%), Gaps = 41/500 (8%)

Query: 68  ACKVFRKIP-RPSVCL-WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
           A  +F KIP RP+     N ++  YSR    K  + +++ +L S ++PD  T   +    
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
              +  + G+++HC  +KFG    V V  +L+  Y     V+  R +FD   + +VV+W 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           ++ +GY     +    +LF +M+ +GVLP   T+  V++A      + +G + H  V + 
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH 223

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
                + + N+L  +Y+  G +  A ++F  ++ +D ++W +++ GY+  GQ D+     
Sbjct: 224 GFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQ-DL----- 277

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
                                    E   +F +MQ + ++P   T  S++ +CA+L  L 
Sbjct: 278 -------------------------EVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELA 312

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-KDKFTWTAMIVGL 424
           L + ++    K+    D  V  AL+    KC +++ A  +F  M   K+  +WTAMI G 
Sbjct: 313 LVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGC 372

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
             NG  D+++++FSQM R  + P+  TY  +L+      + +   E      I+   E +
Sbjct: 373 LQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAE-----VIKTNYERS 427

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAAKQI 543
            +    ++D   + G+  +A++V + +  K + + W A+L G  +     E A++  + I
Sbjct: 428 SSVGTALLDAYVKLGNTIDAVKVFEIIEAK-DLMAWSAMLAGYAQTGETEEAAKLFHQLI 486

Query: 544 LELDPDNEAVYVLLCNIYAA 563
            E    NE  +  + N  A+
Sbjct: 487 KEGIKPNEFTFSSVINACAS 506



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 128/248 (51%), Gaps = 3/248 (1%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           + ++H++ IK     + +V   L+     + G+   A KVF  I    +  W+ M+ GY+
Sbjct: 412 VSEMHAEVIKTNYERSSSVGTALLD-AYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYA 470

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG-FTRDIAVEFGKELHCHVLKFGFDSSV 150
           +    +    ++  ++K  ++P+ +TF  ++    +   A E GK+ H + +K   ++++
Sbjct: 471 QTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNAL 530

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            V +AL++ Y   G +D A  +F    + D+V+WN+M SGY +  Q  +  ++F EM+++
Sbjct: 531 CVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKR 590

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGF 269
            +   +VT + V++AC     ++ G++  +  + +  I P +   + + D+Y+  G +  
Sbjct: 591 NMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEK 650

Query: 270 ALEIFGNI 277
           A+ I   +
Sbjct: 651 AMGIINEM 658



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 7/188 (3%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           SP    E   Q KQ H+  IK+ L     V + LVT   +++G++  A +VF++     +
Sbjct: 506 SPTAAAE---QGKQFHAYAIKMRLNNALCVSSALVTM-YAKRGNIDSAHEVFKRQKERDL 561

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG-KELHC 139
             WN+MI GYS+    K  + ++ +M K ++  D  TF  ++   T    VE G K  + 
Sbjct: 562 VSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNS 621

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVKQFD 198
            +     + ++   + +I  Y   G ++ A GI  ++ +      W  +  G  RV +  
Sbjct: 622 MINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLL-GAARVHRNV 680

Query: 199 ETRKLFGE 206
           E  +L  E
Sbjct: 681 ELGELAAE 688


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/536 (44%), Positives = 329/536 (61%), Gaps = 31/536 (5%)

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N+M   Y  + +   +  +F  M +  +LP S T   VL A A+L D  VGK  H  V +
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                                 MGF           DV + TA+V  Y     +  A Q 
Sbjct: 118 ----------------------MGFIC---------DVYTSTALVHLYCTCLSISDASQL 146

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           FD+MPER+ V W A+I GY    +F +A+  FR M     +P E T+V +L+AC++LGA 
Sbjct: 147 FDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAF 206

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
             G+W+  +I  N+++ ++FVG ALIDMY KCG V + ++VF E+  K+ +TW  +I G 
Sbjct: 207 NQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGY 266

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A+NG GD +L  FS+ML  +  PDEVT++GVL AC H G+V EGR  F  M  Q G++P 
Sbjct: 267 AMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGCMVDLLGRAG L EALE+I++M ++P+ I+W ALL ACRVH + ++ E   K+++
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           EL+P+N   YVLL NIY+   RW    +LR M+  RGI+K PGCS IE+N VV+EFVA +
Sbjct: 387 ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASN 446

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
              P+ + IY +LD +   LK  GY+        D+ +E+KE +V  HSEKLA+AFGL++
Sbjct: 447 DRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLN 506

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S    T+RIVKNLR+C+DCH   K++S+VY R ++VRD+ RFHHF  G CSC+DYW
Sbjct: 507 SPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 166/348 (47%), Gaps = 33/348 (9%)

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           N+MI+ Y  ++ H N + I+  M K  + PD+ TFP +LK   +      GK +H  V++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
            GF   V+   AL+  YC C  +  A  +FD   + + VTWNA+ +GY   ++F +    
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           F  M   G  P+  T+V+VLSAC+ L   + GK  H ++   ++  N+ +  AL DMYA 
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAK 237

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           CG +    ++F  I+ K+V +W  +++GY   GQ D A Q F +                
Sbjct: 238 CGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSR---------------- 281

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKND 382
                          M   N +PDE T + +L AC + G +  G W    + +   ++  
Sbjct: 282 ---------------MLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           I     ++D+  + G +E+A  + + M +  D   W A++    ++G+
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGN 374



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 129/321 (40%), Gaps = 12/321 (3%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K IH   I++G + +      LV   C+    +  A ++F ++P  +   WN +I GY+ 
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALVHLYCTCL-SISDASQLFDEMPERNAVTWNALITGYTH 167

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  +  +  ML    +P   T   +L   +   A   GK +H  +       +VFV
Sbjct: 168 NRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFV 227

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             ALI  Y  CG V     +F+   + +V TWN + SGY    Q D   + F  M  +  
Sbjct: 228 GTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENF 287

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFAL 271
            P  VT + VL AC     +  G+     +K +  + P +     + D+    G +  AL
Sbjct: 288 KPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEAL 347

Query: 272 EIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPE------RDYVLWTAMIDGYL 324
           E+  ++    D I W A++      G   +      ++ E       +YVL + +   Y 
Sbjct: 348 ELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNI---YS 404

Query: 325 RVNRFREALTLFREMQTSNIR 345
           R  R+ E   L   M    IR
Sbjct: 405 RERRWAEVGKLRGMMSLRGIR 425


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/704 (34%), Positives = 394/704 (55%), Gaps = 32/704 (4%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           T L+  + + +  H    +H+   KLG   +  V   L+    S +G++  A  VF  I 
Sbjct: 140 TTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALID-AYSVRGNVDVARHVFDDIC 198

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
              +  W  M+  Y+    ++  + ++  M     +P+N+T    LK      A   GK 
Sbjct: 199 CKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKS 258

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H   LK  +D  +FV  AL+  Y   GE+  A+ +F+   K D++ W+ M + Y +  +
Sbjct: 259 VHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDR 318

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
             E   LF  M +  V+P + T   VL ACA    LD+GK+ H  V +  +  N+ + NA
Sbjct: 319 SKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNA 378

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           + D+YA CGE                               ++ + + F+++P+R+ V W
Sbjct: 379 IMDVYAKCGE-------------------------------IENSMKLFEELPDRNDVTW 407

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
             +I GY+++     A+ LF  M   +++P E T  S+L A A+L ALE G  + +   K
Sbjct: 408 NTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIK 467

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
                D  V N+LIDMY KCG +  A+  F +M ++D+ +W AMI G +++G   ++L++
Sbjct: 468 TMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNL 527

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F  M      P+++T+VGVLSAC++ G++ +G+ +F  M+  + I+P   HY CMV LLG
Sbjct: 528 FDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLG 587

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R G  +EA+++I  +  +P+ +VW ALLGAC +H+  ++  + A+ +LE++P ++A +VL
Sbjct: 588 RLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVL 647

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L N+YA   RWDN   +R+ +  + ++K PG S +E  GVVH F  GD SHP  K I   
Sbjct: 648 LSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAM 707

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L+ +    +  GY+PD + V LDV +++KER ++ HSE+LA+A+GLI +    +IRI+KN
Sbjct: 708 LEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKN 767

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C+DCH + KL+S V  RE+++RD  RFHHF+HG CSC DYW
Sbjct: 768 LRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 240/498 (48%), Gaps = 34/498 (6%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K +H   +K G   +   QN L+ F   +   ++ A K+F ++P+ +   + T+ +GYSR
Sbjct: 55  KHLHCHILKRGTSLDLFAQNILLNFYV-QSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  +   L + K     + + F  LLK             LH  V K G  +  FV
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             ALI  Y + G VD+AR +FD     D+V+W  M + Y     ++E+ +LF +M   G 
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P + TI   L +C  L+  +VGK  H    +     +L +  AL ++YA  GE+  A  
Sbjct: 234 KPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQR 293

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  +   D+I W                               + MI  Y + +R +EA
Sbjct: 294 LFEEMPKTDLIPW-------------------------------SLMIARYAQSDRSKEA 322

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L LF  M+ +++ P+ FT  S+L ACA+  +L+LG+ + + + K  + +++FV NA++D+
Sbjct: 323 LDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDV 382

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG++E + ++F E+  ++  TW  +IVG    G G++++++F+ ML   + P EVTY
Sbjct: 383 YAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTY 442

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
             VL A      ++ G +  + +TI+     +      ++D+  + G +N+A      M 
Sbjct: 443 SSVLRASASLAALEPGLQIHS-LTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMN 501

Query: 513 MKPNSIVWGALLGACRVH 530
            K + + W A++    +H
Sbjct: 502 -KRDEVSWNAMICGYSMH 518



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 202/437 (46%), Gaps = 38/437 (8%)

Query: 114 DNYTFPFLLKGFTRDIAVEF-GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           D++++  +L+   R+ A    GK LHCH+LK G    +F QN L++ Y     +  A  +
Sbjct: 33  DSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKL 92

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG--VLPTSVTIVLVLSACAKLK 230
           FD   + + +++  +  GY R  QF +       + ++G  V P   T +L L     L 
Sbjct: 93  FDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLA 152

Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
            L      H  V +     +  +  AL D Y+  G +  A  +F +I  KD++SWT +V 
Sbjct: 153 HL--CWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVA 210

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
            Y        A   F                       + E+L LF +M+    +P+ FT
Sbjct: 211 CY--------AENCF-----------------------YEESLQLFNQMRIMGYKPNNFT 239

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           I   L +C  L A  +G+ V     K    +D+FVG AL+++Y K G++  AQR+F EM 
Sbjct: 240 ISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMP 299

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
           + D   W+ MI   A +    ++LD+F +M + S++P+  T+  VL AC  +  +D G++
Sbjct: 300 KTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQ 359

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
             +   ++ G+  N      ++D+  + G +  ++++ + +P + N + W  ++      
Sbjct: 360 IHS-CVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDR-NDVTWNTIIVGYVQL 417

Query: 531 RDAEMAEMAAKQILELD 547
            D E A      +LE D
Sbjct: 418 GDGERAMNLFTHMLEHD 434


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/679 (35%), Positives = 385/679 (56%), Gaps = 15/679 (2%)

Query: 45  LTNPTV--QNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLI 102
           +  PTV  +N ++       G + +A ++F  +P   V  WN M+   S+    +  + +
Sbjct: 223 IERPTVFCRNSMLAGYAKSYG-VDHALELFESMPERDVVSWNMMVSALSQSGRAREALSV 281

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
            +DM    VR D+ T+   L    +  ++ +GK+LH  V++       +V +A++  Y  
Sbjct: 282 AVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAK 341

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
           CG    AR +F      + V+W  +  G+ +   F E+ +LF +M  + +      +  +
Sbjct: 342 CGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATI 401

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           +S C+   D+ + ++ H    +      +++ N+L  MYA CG +  A  IF +++ +D+
Sbjct: 402 ISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDI 461

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +SWT ++T Y   G +  AR++FD M  R+ + W AM+  Y++     + L ++  M T 
Sbjct: 462 VSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTE 521

Query: 343 -NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
            ++ PD  T V++   CA++GA +LG+ +  +  K  +  D  V NA+I MY KCG + +
Sbjct: 522 KDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISE 581

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A+++F  + RKD  +W AMI G + +G G +++++F  ML+    PD ++YV VLS+C+H
Sbjct: 582 ARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSH 641

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
           +G+V EG+ YF  +   H + P   H+ CMVDLL RAG+L EA  +I  MPMKP + VWG
Sbjct: 642 SGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWG 701

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
           ALL AC+ H + E+AE+AAK + +LD  +   Y+LL  IYA   +  +  ++R+++ D+G
Sbjct: 702 ALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKG 761

Query: 582 IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
           IKK PG S +E+   VH F A D SHPQ   I  KLDE+   +  +GY+           
Sbjct: 762 IKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYV----------- 810

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
             +  R+   HSEKLA+AFG+++    + I I+KNLR+C DCH + KL+S V  RE ++R
Sbjct: 811 RTESLRSEIHHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIR 870

Query: 702 DKTRFHHFKHGSCSCKDYW 720
           D  RFHHFK GSCSC DYW
Sbjct: 871 DAVRFHHFKGGSCSCGDYW 889



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 198/423 (46%), Gaps = 37/423 (8%)

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF--DVSYKDDVVTWNAMFSGYKRVK 195
           H  ++  G  S+VF+QN L+  Y  CG +  ARG+   D++ + +V+T N M +GY ++ 
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDIT-EPNVITHNIMMNGYAKLG 109

Query: 196 QFDETRKLFGEMERKGV--------------------------------LPTSVTIVLVL 223
              +  +LFG M R+ V                                LP + T    +
Sbjct: 110 SLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAM 169

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            +C  L   +V  +    + +     +  +   + DM+  CG + FA + F  I+   V 
Sbjct: 170 KSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVF 229

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
              +++ GY     VD A + F+ MPERD V W  M+    +  R REAL++  +M    
Sbjct: 230 CRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRG 289

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           +R D  T  S LTACA L +L  G+ +   + ++    D +V +A++++Y KCG  ++A+
Sbjct: 290 VRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEAR 349

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
           RVF  +  ++  +WT +I G    G   +SL++F+QM    +  D+     ++S C++  
Sbjct: 350 RVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRM 409

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
            +   R+  + ++++ G          ++ +  + G+L  A  +  +M  + + + W  +
Sbjct: 410 DMCLARQLHS-LSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEER-DIVSWTGM 467

Query: 524 LGA 526
           L A
Sbjct: 468 LTA 470



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 126/553 (22%), Positives = 231/553 (41%), Gaps = 98/553 (17%)

Query: 43  GLLTNPTV-QNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101
           G +T P V  + ++    ++ G +  A ++F ++PR  V  WNT++ GY +     + + 
Sbjct: 88  GDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAME 147

Query: 102 IYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY 160
            ++ M +S D  P+ +TF   +K        E   +L   + KFGF     V   ++  +
Sbjct: 148 SFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMF 207

Query: 161 CLCGEVDMARG-------------------------------IFDVSYKDDVVTWNAMFS 189
             CG VD A                                 +F+   + DVV+WN M S
Sbjct: 208 VRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVS 267

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
              +  +  E   +  +M  +GV   S T    L+ACAKL  L  GK+ H  V       
Sbjct: 268 ALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCI 327

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           +  + +A+ ++YA CG    A  +F ++++++ +SWT ++ G++  G             
Sbjct: 328 DPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGC------------ 375

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
                              F E+L LF +M+   +  D+F + +I++ C+N   + L   
Sbjct: 376 -------------------FSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQ 416

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING- 428
           + +   K+     + + N+LI MY KCG+++ A+ +F  M  +D  +WT M+   +  G 
Sbjct: 417 LHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGN 476

Query: 429 ----------------------------HG--DKSLDMFSQML-RASIIPDEVTYVGVLS 457
                                       HG  +  L M+S ML    +IPD VTYV +  
Sbjct: 477 IGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFR 536

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
            C   G    G +     T++ G+  + +    ++ +  + G ++EA ++   +  K + 
Sbjct: 537 GCADMGANKLGDQ-ITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRK-DL 594

Query: 518 IVWGALLGACRVH 530
           + W A++     H
Sbjct: 595 VSWNAMITGYSQH 607



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 141/339 (41%), Gaps = 37/339 (10%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF-GNIKNK 280
            L +C     L   +  H  +    +   + L+N L   Y +CG +  A  +  G+I   
Sbjct: 34  ALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEP 93

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +VI+   ++ GY   G +  A + F +MP RD   W  ++ GY +  RF +A+  F  M+
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 341 TS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
            S +  P+ FT    + +C  LG  E+   +   + K   + D  V   ++DM+ +CG V
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAV 213

Query: 400 EKAQR-------------------------------VFREMLRKDKFTWTAMIVGLAING 428
           + A +                               +F  M  +D  +W  M+  L+ +G
Sbjct: 214 DFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSG 273

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG-IEPNEAH 487
              ++L +   M    +  D  TY   L+AC     +  G++  A +      I+P  A 
Sbjct: 274 RAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVA- 332

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
              MV+L  + G   EA  V  ++  + N++ W  L+G 
Sbjct: 333 -SAMVELYAKCGCFKEARRVFSSLRDR-NTVSWTVLIGG 369



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           QI   T+K+GL+ + +V N ++T   S+ G +  A K+F  + R  +  WN MI GYS+ 
Sbjct: 549 QITGHTVKVGLILDTSVMNAVITM-YSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQH 607

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
              K  + I+ DMLK   +PD  ++  +L   +    V+ GK  +  +LK   + S  ++
Sbjct: 608 GMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGK-FYFDMLKRDHNVSPGLE 666

Query: 154 --NALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYK 192
             + ++      G +  A+ + D +  K     W A+ S  K
Sbjct: 667 HFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACK 708


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/593 (39%), Positives = 352/593 (59%), Gaps = 33/593 (5%)

Query: 130  AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            A+  G+ +H H++K  ++  V+++  LI  Y  C  +  AR + D   + +VV+W AM S
Sbjct: 492  AIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMIS 551

Query: 190  GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
            GY +     E   LF EM   G  P   T   VL++C       +G++ H  V +     
Sbjct: 552  GYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFES 611

Query: 250  NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
            ++ + ++L DMYA  G                               ++  AR+ FD +P
Sbjct: 612  HIFVGSSLLDMYAKAG-------------------------------KICEARRVFDGLP 640

Query: 310  ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
            ERD V  TA+I GY ++    EAL LFR +Q   +R +  T  S+LTA + L AL+ G  
Sbjct: 641  ERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQ 700

Query: 370  VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
            V +++ + K+   + + N+LIDMY KCG +  ++R+F  M  +   +W AM+VG + +G 
Sbjct: 701  VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGL 760

Query: 430  GDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDEGREYFADMTIQH-GIEPNEAH 487
            G +++++F  M   + + PD VT++ VLS C+H GM D G E F +M  Q  G EP   H
Sbjct: 761  GREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEH 820

Query: 488  YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
            YGC+VDL GRAG + EA E IK MP +P + +WG+LLGACRVH++  + E  A+++LE++
Sbjct: 821  YGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIE 880

Query: 548  PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
             +N   YV+L N+YA+  RWD+ R +R+++ ++ + K PG S IE++  +H F A D+SH
Sbjct: 881  SENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSH 940

Query: 608  PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
            P+ +E++ K+ E++  +K  GY+P++S V  DV +E KE+ +  HSEKLA+AFGLI +  
Sbjct: 941  PRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPG 1000

Query: 668  GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            G  +RI+KNLR+CVDCH  AK +S VY REV +RDK RFHH   G+CSC DYW
Sbjct: 1001 GTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 201/401 (50%), Gaps = 43/401 (10%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNT 85
           ++ + +++H+  IK        ++ +L+     C   GD +   +V  ++P  +V  W  
Sbjct: 492 AIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDAR---RVLDEMPERNVVSWTA 548

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           MI GYS+       + ++++ML S   P+ +TF  +L   T     + G+++H  V+K  
Sbjct: 549 MISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTS 608

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           F+S +FV ++L+  Y   G++  AR +FD   + DVV+  A+ SGY ++   +E   LF 
Sbjct: 609 FESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFR 668

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
            ++R+G+    VT   VL+A + L  LD G++ H +V   K+   ++L+N+L DMY+ CG
Sbjct: 669 RLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCG 728

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            + ++  IF ++  + VISW A++ GY   G                             
Sbjct: 729 SLTYSRRIFDSMPERTVISWNAMLVGYSKHGLG--------------------------- 761

Query: 326 VNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGE--WVKTYIDKNKVKND 382
               REA+ LF+ M+  N ++PD  T +++L+ C++ G  + G   + +    K+  + +
Sbjct: 762 ----REAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPE 817

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           I     ++D++ + G VE+A     E ++K  F  TA I G
Sbjct: 818 IEHYGCVVDLFGRAGRVEEA----FEFIKKMPFEPTAAIWG 854



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 41/307 (13%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           VL+ C     +  G+R H ++ +    P + L   L  +Y  C  +G A  +   +  ++
Sbjct: 483 VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 542

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V+SWTA+++GY  RG                                  EAL LF EM  
Sbjct: 543 VVSWTAMISGYSQRGYAS-------------------------------EALHLFVEMLM 571

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
           S   P+EFT  ++LT+C +    +LG  + + + K   ++ IFVG++L+DMY K G + +
Sbjct: 572 SGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICE 631

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A+RVF  +  +D  + TA+I G A  G  +++LD+F ++ R  +  + VTY  VL+A + 
Sbjct: 632 ARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSG 691

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHY----GCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
              +D GR+  +     H +      Y      ++D+  + G L  +  +  +MP +   
Sbjct: 692 LAALDHGRQVHS-----HVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER-TV 745

Query: 518 IVWGALL 524
           I W A+L
Sbjct: 746 ISWNAML 752



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 108/226 (47%), Gaps = 1/226 (0%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           S+LT C +  A+  G+ V  ++ K   +  +++   LI +Y KC  +  A+RV  EM  +
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 541

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           +  +WTAMI G +  G+  ++L +F +ML +   P+E T+  VL++CT +     GR+  
Sbjct: 542 NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 601

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
           + + I+   E +      ++D+  +AG + EA  V   +P +        + G  ++  D
Sbjct: 602 S-LVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLD 660

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
            E  ++  +   E    N   Y  +    +     D+ R++   +L
Sbjct: 661 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL 706


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/689 (35%), Positives = 380/689 (55%), Gaps = 48/689 (6%)

Query: 64   DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            +++ A K+F +IP+  V  W  +I G++RI    + + ++  M    V P+ +T   +LK
Sbjct: 336  NLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLK 395

Query: 124  GFTRDIA-VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
              + ++     GK +H  +L+ G D    + N+++  Y  C     A  +F +  + D V
Sbjct: 396  SCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTV 455

Query: 183  TWNAMFSGYKRVKQFDETRKLFGEMERK-------------------------------G 211
            +WN M S Y ++    ++  LF ++  K                               G
Sbjct: 456  SWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAG 515

Query: 212  VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
                 +T  + L   + L  L +GK+ H  V +  ++ +  + N+L DMY  CGEM  A 
Sbjct: 516  PAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKAS 575

Query: 272  EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
             IF ++  +  +              ++      D + E   V W++M+ GY++  RF +
Sbjct: 576  VIFKHLPQESSM--------------MNSEESCDDAVVES--VSWSSMVSGYVQNGRFED 619

Query: 332  ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
            AL  F  M  S +  D+FT+ S+++ACA+ G LELG  V  YI K     D+F+G+++ID
Sbjct: 620  ALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIID 679

Query: 392  MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
            MY KCG +  A  +F +   ++   WT+MI G A++G G +++ +F  M+   I P+EV+
Sbjct: 680  MYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVS 739

Query: 452  YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
            +VGVL+AC+H G+++EG +YF  M   +GI P   H+ CMVDL GRAG LNE  E I N 
Sbjct: 740  FVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNN 799

Query: 512  PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
             +   S VW + L +CRVH++ EM     K++LEL+P +   Y+L  +I A  +RW+   
Sbjct: 800  AISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAA 859

Query: 572  ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            ++R ++  RG+KK P  S I++   VH FV GD+SHPQ  +IY  LDE+   LK +GY  
Sbjct: 860  KIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYST 919

Query: 632  DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
            D++ V  DV +E ++  +  HSEKLA+A+G+IS+ PG  IR++KNLR+C+DCH   K  S
Sbjct: 920  DVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYAS 979

Query: 692  MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             +  RE+I+RD  RFHHFKHG CSC DYW
Sbjct: 980  ELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 159/341 (46%), Gaps = 33/341 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL---------- 82
           KQIH+Q +K+G+L +  V+N L+   C + G+M+ A  +F+ +P+ S  +          
Sbjct: 540 KQIHTQVLKVGVLDDGFVRNSLIDMYC-KCGEMEKASVIFKHLPQESSMMNSEESCDDAV 598

Query: 83  -----WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
                W++M+ GY +    ++ +  +  M+ S V  D +T   ++        +E G+++
Sbjct: 599 VESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQV 658

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H ++ K G    VF+ +++I  Y  CG ++ A  IF+ +   +VV W +M SG     Q 
Sbjct: 659 HGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQG 718

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILENA 256
            E  +LF  M  +G+ P  V+ V VL+AC+    L+ G +  R ++E   I P       
Sbjct: 719 REAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTC 778

Query: 257 LTDMYAACGEMGFALE-IFGNIKNKDVISWTAIVTGYINRGQVDMA---------RQYFD 306
           + D+Y   G +    E I  N  +K    W + ++       ++M           + FD
Sbjct: 779 MVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFD 838

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
             P   Y+L++++       +R+ EA  +   MQ   ++ +
Sbjct: 839 AGP---YILFSSICA---TEHRWEEAAKIRSLMQQRGVKKN 873


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 365/621 (58%), Gaps = 33/621 (5%)

Query: 101 LIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
           L  LD++    + P+   +  +L   T    ++ G+ +H H+    F+  + + N +++ 
Sbjct: 90  LYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNM 149

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
           Y  CG ++ A+ +FD     D+V+W  + SGY +  Q  E   LF +M   G  P   T+
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
             +L A         G++ H +  +     N+ + ++L DMYA    M  A  IF ++  
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAA 269

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           K+V+SW A++ G+  +G+ +                                 + LF +M
Sbjct: 270 KNVVSWNALIAGHARKGEGE-------------------------------HVMRLFLQM 298

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
                 P  FT  S+ TACA+ G+LE G+WV  ++ K+  +   ++GN LIDMY K G +
Sbjct: 299 LRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSI 358

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           + A++VFR ++++D  +W ++I G A +G G ++L +F QML+A + P+E+T++ VL+AC
Sbjct: 359 KDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTAC 418

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H+G++DEG+ YF ++  +H IE   AH+  +VDLLGRAG LNEA + I+ MP+KP + V
Sbjct: 419 SHSGLLDEGQYYF-ELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAV 477

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           WGALLG+CR+H++ ++   AA+QI ELDP +   +VLL NIYA+  R  +  ++R+M+ +
Sbjct: 478 WGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKE 537

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
            G+KK P CS +E+   VH FVA D SHP  +EI    ++++  +K +GY+PD S V   
Sbjct: 538 SGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFF 597

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           + ++D+E  +  HSEKLA+AF ++ + PG+TIRI KN+R+C DCH   K  S V  RE+I
Sbjct: 598 MNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREII 657

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           VRD  RFHHF HG CSC+DYW
Sbjct: 658 VRDTNRFHHFLHGMCSCRDYW 678



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 199/420 (47%), Gaps = 41/420 (9%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           S+ P  TL  +      +  C  + +LKQ   IH+  I+     +  V    +    ++ 
Sbjct: 100 SLEPERTLYSKM-----LNKCTYLRKLKQGRAIHAH-IQSSTFEDDLVLLNFILNMYAKC 153

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A  +F K+P   +  W  +I GYS+       + ++  ML    +P+ +T   LL
Sbjct: 154 GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLL 213

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K      +   G++LH   LK+G+D +V V ++L+  Y     +  A+ IF+     +VV
Sbjct: 214 KASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVV 273

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNA+ +G+ R  + +   +LF +M R+G  PT  T   V +ACA    L+ GK  H +V
Sbjct: 274 SWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHV 333

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +    P   + N L DMYA  G +  A ++F  +  +D++SW +I++GY   G    A 
Sbjct: 334 IKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEAL 393

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
           Q F+QM +                               + ++P+E T +S+LTAC++ G
Sbjct: 394 QLFEQMLK-------------------------------AKVQPNEITFLSVLTACSHSG 422

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            L+ G++    + K+K++  +     ++D+  + G + +A +   EM ++     W A++
Sbjct: 423 LLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 482



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 156/338 (46%), Gaps = 11/338 (3%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           + L+    T  S H  +Q+H+ ++K G   N  V + L+    +    M+ A  +F  + 
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMY-ARWAHMREAKVIFNSLA 268

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             +V  WN +I G++R    ++ + ++L ML+    P ++T+  +        ++E GK 
Sbjct: 269 AKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKW 328

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H HV+K G     ++ N LI  Y   G +  A+ +F    K D+V+WN++ SGY +   
Sbjct: 329 VHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGL 388

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
             E  +LF +M +  V P  +T + VL+AC+    LD G+     +K+ KI   +     
Sbjct: 389 GAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVT 448

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDM----ARQYFDQMPER 311
           + D+    G +  A +    +  K   + W A++        +D+    A Q F+  P  
Sbjct: 449 VVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHD 508

Query: 312 D--YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
              +VL + +   Y    R  +A  + + M+ S ++ +
Sbjct: 509 SGPHVLLSNI---YASAGRLSDAAKVRKMMKESGVKKE 543


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/536 (44%), Positives = 329/536 (61%), Gaps = 31/536 (5%)

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N+M   Y  + +   +  +F  M +  +LP S T   VL A A+L D  VGK  H  V +
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                                 MGF           DV + TA+V  Y     +  A Q 
Sbjct: 118 ----------------------MGFIC---------DVYTSTALVHLYCTCLSISDASQL 146

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           FD+MPER+ V W A+I GY    +F +A+  FR M     +P E T+V +L+AC++LGA 
Sbjct: 147 FDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAF 206

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
             G+W+  +I  N+++ ++FVG ALIDMY KCG V + ++VF E+  K+ +TW  +I G 
Sbjct: 207 NQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGY 266

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A+NG GD +L  FS+ML  +  PDEVT++GVL AC H G+V EGR  F  M  Q G++P 
Sbjct: 267 AMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGCMVDLLGRAG L EALE+I++M ++P+ I+W ALL ACRVH + ++ E   K+++
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           EL+P+N   YVLL NIY+   RW    +LR M+  RGI+K PGCS IE+N VV+EFVA +
Sbjct: 387 ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASN 446

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
              P+ + IY +LD +   LK  GY+        D+ +E+KE +V  HSEKLA+AFGL++
Sbjct: 447 DRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLN 506

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S    T+RIVKNLR+C+DCH   K++S+VY R ++VRD+ RFHHF  G CSC+DYW
Sbjct: 507 SPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 166/348 (47%), Gaps = 33/348 (9%)

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           N+MI+ Y  ++ H N + I+  M K  + PD+ TFP +LK   +      GK +H  V++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
            GF   V+   AL+  YC C  +  A  +FD   + + VTWNA+ +GY   ++F +    
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           F  M   G  P+  T+V+VLSAC+ L   + GK  H ++   ++  N+ +  AL DMYA 
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAK 237

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           CG +    ++F  I+ K+V +W  +++GY   GQ D A Q F +                
Sbjct: 238 CGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSR---------------- 281

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKND 382
                          M   N +PDE T + +L AC + G +  G W    + +   ++  
Sbjct: 282 ---------------MLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           I     ++D+  + G +E+A  + + M +  D   W A++    ++G+
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGN 374



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 129/321 (40%), Gaps = 12/321 (3%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K IH   I++G + +      LV   C+    +  A ++F ++P  +   WN +I GY+ 
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALVHLYCTCL-SISDASQLFDEMPERNAVTWNALITGYTH 167

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  +  +  ML    +P   T   +L   +   A   GK +H  +       +VFV
Sbjct: 168 NRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFV 227

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             ALI  Y  CG V     +F+   + +V TWN + SGY    Q D   + F  M  +  
Sbjct: 228 GTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENF 287

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFAL 271
            P  VT + VL AC     +  G+     +K +  + P +     + D+    G +  AL
Sbjct: 288 KPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEAL 347

Query: 272 EIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPE------RDYVLWTAMIDGYL 324
           E+  ++    D I W A++      G   +      ++ E       +YVL + +   Y 
Sbjct: 348 ELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNI---YS 404

Query: 325 RVNRFREALTLFREMQTSNIR 345
           R  R+ E   L   M    IR
Sbjct: 405 RERRWAEVGKLRGMMNLRGIR 425


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/700 (34%), Positives = 387/700 (55%), Gaps = 39/700 (5%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           IE    +H++    +Q        N  V N  +    S  G    +  VF K+ R ++  
Sbjct: 121 IEVGRRLHEMVSASTQ------FCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQ 174

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           WN ++  Y+R +  ++ + I+ +++  ++ +PDN+T P ++K     + +  G+ +H   
Sbjct: 175 WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA 234

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMA-RGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
            K    S VFV NALI+ Y  CG V+ A + +FD+     V +WNA+  GY +     + 
Sbjct: 235 TKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKA 294

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             L+ +M   G+ P   TI  +L AC+++K L  G+  H +     +  +  +  +L  +
Sbjct: 295 LDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSL 354

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           Y  CG+  FA ++                               FD M  R  V W  MI
Sbjct: 355 YICCGK-PFAAQVL------------------------------FDGMEHRSLVSWNVMI 383

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            GY +     EA+ LFR+M +  I+P E  I+ +  AC+ L AL LG+ +  +  K  + 
Sbjct: 384 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT 443

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            DIFV +++IDMY K G +  +QR+F  +  KD  +W  +I G  I+G G ++L++F +M
Sbjct: 444 EDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKM 503

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           LR  + PD+ T+ G+L AC+H G+V++G EYF  M   H IEP   HY C+VD+LGRAG 
Sbjct: 504 LRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGR 563

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           +++AL +I+ MP  P+S +W +LL +CR+H +  + E  A ++LEL+P+    YVL+ N+
Sbjct: 564 IDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNL 623

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           +A   +WD+ R +R  + D G++K  GCS IE+ G VH F+ GD+  P+ +E+      +
Sbjct: 624 FAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRL 683

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
              +  +GY PD   V  D+ EEDK   +  HSEKLA++FGL+++  G+ +R+ KNLR+C
Sbjct: 684 EVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRIC 743

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            DCH  AK +S V +R+++VRD  RFHHF+ G CSC DYW
Sbjct: 744 GDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 43/298 (14%)

Query: 185 NAMFSGYKRVKQFDETRKL-----FGEMERKGVLPTSV----TIVLVLSACAKLKDLDVG 235
           N  FS    +K+  E+  L     F + E   V+  S      + ++L AC + KD++VG
Sbjct: 65  NRQFSSLHEIKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVG 124

Query: 236 KRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           +R H  V    +   + +L   +  MY+ CG    +  +F  ++ K++  W AIV+ Y  
Sbjct: 125 RRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYT- 183

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVS 353
                                         R   F +A+++F E+   +  +PD FT+  
Sbjct: 184 ------------------------------RNELFEDAMSIFSELISVTEHKPDNFTLPC 213

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA-QRVFREMLRK 412
           ++ ACA L  L LG+ +     K  + +D+FVGNALI MY KCG VE+A +RVF  M  K
Sbjct: 214 VIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTK 273

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
              +W A++ G A N    K+LD++ QM  + + PD  T   +L AC+    +  G E
Sbjct: 274 TVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEE 331


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/776 (33%), Positives = 407/776 (52%), Gaps = 75/776 (9%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            ++ ++ C S   +   +++H      G   N  V   L+    ++ G +  A +VF  +
Sbjct: 7   FVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMY-AQCGSVPEAQQVFEIL 65

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
            R  V  W  MI  Y +   +   + ++  M + DV P   T+  +L       +++ G 
Sbjct: 66  ERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGM 125

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           E+H  +L+ GF+  VFV  ALI+ Y  CG V  A   F      DVV+W AM +   +  
Sbjct: 126 EIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHD 185

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           QF   R L+  M+  GV+P  +T+  V +A      L  GK  +  V    +  ++ + N
Sbjct: 186 QFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMN 245

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE----- 310
           +  +M+   G +G A  +F ++ ++DV++W  ++T Y+       A + F ++ +     
Sbjct: 246 SAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKA 305

Query: 311 ----------------------------------RDYVLWTAMIDGYLRV---------- 326
                                             RD V+ TA++  Y R           
Sbjct: 306 NDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIF 365

Query: 327 --------------------NRFR-EALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
                               N FR EAL LF+EMQ    RP   T+V++L  CA+L AL+
Sbjct: 366 VDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQ 425

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            G  + ++I +N+ + ++ V  ALI+MY KCG + +A  VF +M ++D   W +M+   A
Sbjct: 426 KGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYA 485

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            +G+ D++L +F+QM    +  D V++V VLSA +H+G V +G +YF  M     I P  
Sbjct: 486 QHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTP 545

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMP-MKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             YGC+VDLLGRAG + EA++++  +    P+ I+W  LLGACR H   + A+ AA+Q+L
Sbjct: 546 ELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVL 605

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           E DP +   YV+L N+YAA   WD    +R+++  RG+KK PG S IE+   VHEF+ GD
Sbjct: 606 ERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGD 665

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           +SHP+   IY +LD + S+++  GY+PD   +  DV +E KE  ++ HSE+LA+AFGLIS
Sbjct: 666 RSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLIS 725

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + PG  +R++KNLR+C DCH   K +S +  RE++VRD  RFH+FK G CSCKDYW
Sbjct: 726 TPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 195/409 (47%), Gaps = 33/409 (8%)

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
           +PD   F  LL+  +    V+ G+ +H HV   GF+ +  V   LI  Y  CG V  A+ 
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +F++  + DV  W  M   Y +   +D    +F +M+ + V+PT VT V +L+ACA  + 
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           L  G   H  + +     ++ +  AL +MY  CG +  A + F  ++++DV+SWTA++  
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
            +   Q  +AR             W                  L+R MQ   + P++ T+
Sbjct: 181 CVQHDQFALAR-------------W------------------LYRRMQLDGVVPNKITL 209

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
            ++  A  +   L  G++V   +    +++D+ V N+ ++M+   G +  A+R+F +M+ 
Sbjct: 210 YTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVD 269

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           +D  TW  +I     N +  +++ +F ++ +  +  +++T+V +L+  T    + +G+  
Sbjct: 270 RDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGK-V 328

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
             ++  + G + +      ++ L GR     +A ++  +M  K + I W
Sbjct: 329 IHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSK-DVITW 376


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/750 (34%), Positives = 401/750 (53%), Gaps = 94/750 (12%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS---VCLWNTMIKG 89
           + +H      G  +N  V N LV    S  G ++ A  VF +I R     V  WN+++  
Sbjct: 169 RALHGLICCNGFESNVFVCNALVAMY-SRCGSLEDASLVFDEITRKGIDDVISWNSIVAA 227

Query: 90  YSRIDSHKNGVLIYLDML------KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           + +  + +  + ++ +M        ++ R D  +   +L       A+   KE+H + ++
Sbjct: 228 HVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIR 287

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
            G  +  FV NALI TY  CG ++ A  +F+V    DVV+WNAM +GY +   F    +L
Sbjct: 288 NGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFEL 347

Query: 204 FGEMERK-----------------------------------GVLPTSVTIVLVLSACAK 228
           F  M ++                                   G  P SVTI+ +LSACA 
Sbjct: 348 FENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACAS 407

Query: 229 LKDLDVGKRAHRY-VKECKI-----------VPNLILENALTDMYAACGEMGFALEIFGN 276
           L  L  G   H Y +K+C +             +L++ NAL DMY+ C            
Sbjct: 408 LGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSF--------- 458

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMP--ERDYVLWTAMIDGYLRVNRFREALT 334
                                   AR  FD +P  ER+ V WT MI GY +     +AL 
Sbjct: 459 ----------------------KAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALK 496

Query: 335 LFREM--QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV--KNDIFVGNALI 390
           +F EM  +   + P+ +TI  IL ACA+L AL +G+ +  Y+ ++     +  FV N LI
Sbjct: 497 IFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLI 556

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMY KCGDV+ A+ VF  M ++++ +WT+M+ G  ++G G ++LD+F +M +A  +PD++
Sbjct: 557 DMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDI 616

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           +++ +L AC+H+GMVD+G  YF  M   + +  +  HY C++DLL R G L++A + I+ 
Sbjct: 617 SFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQE 676

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MPM+P++++W ALL ACRVH + E+AE A  +++ +  +N+  Y L+ NIYA   RW + 
Sbjct: 677 MPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDV 736

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
             +RQ++   GIKK PGCS ++       F  GD+SHP + EIY  L+ +   +K +GY+
Sbjct: 737 ARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYV 796

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           P+ +    DV +E+K   + +HSEKLA+A+GL+++ PG  IRI KNLR+C DCH     +
Sbjct: 797 PETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYI 856

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S + D E+IVRD +RFHHFK+GSCSC  YW
Sbjct: 857 SKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 181/597 (30%), Positives = 292/597 (48%), Gaps = 62/597 (10%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLL-------------------TNPTVQNKLVTF 57
           T   S ++ C S++ ++QIH + I  GLL                    +P      V  
Sbjct: 32  THFASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVA 91

Query: 58  CCSEKGDMKYACKVFRKI-PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
                G  K A  V  ++ P P+V  WN +++ + +       + +   ML++  +PD++
Sbjct: 92  SYLACGATKDALSVLERVTPSPAV-WWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHF 150

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-V 175
           T P+ LK      +   G+ LH  +   GF+S+VFV NAL++ Y  CG ++ A  +FD +
Sbjct: 151 TLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEI 210

Query: 176 SYK--DDVVTWNAMFSGYKRVKQFDETRKLFGEM----------ERKGVLPTSVTIVLVL 223
           + K  DDV++WN++ + + +        +LF EM          ER  +    ++IV +L
Sbjct: 211 TRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDI----ISIVNIL 266

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            ACA LK L   K  H Y        +  + NAL D YA CG M  A+++F  ++ KDV+
Sbjct: 267 PACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVV 326

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFREM 339
           SW A+VTGY   G    A + F+ M +     D + W+A+I GY +    +EAL  F++M
Sbjct: 327 SWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN------------KVKNDIFVGN 387
                 P+  TI+S+L+ACA+LGAL  G  +  Y  K                 D+ V N
Sbjct: 387 ILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYN 446

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRA-- 443
           ALIDMY KC   + A+ +F  + R+++   TWT MI G A  G  + +L +FS+M+    
Sbjct: 447 ALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPY 506

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-CMVDLLGRAGHLN 502
           ++ P+  T   +L AC H   +  G++  A +T  H  EP+      C++D+  + G ++
Sbjct: 507 AVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVD 566

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVH-RDAEMAEMAAK-QILELDPDNEAVYVLL 557
            A  V  +MP K N + W +++    +H R  E  ++  K Q     PD+ +  VLL
Sbjct: 567 TARNVFDSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 170/364 (46%), Gaps = 31/364 (8%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLT------------NPTVQN 52
           S P+++T    +IS +  C S+  L Q   IH+ ++K  LL+            +  V N
Sbjct: 391 SEPNSVT----IISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYN 446

Query: 53  KLVTFCCSEKGDMKYACKVFRKIPRP--SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD 110
            L+    S+    K A  +F  IPR   +V  W  MI GY++     + + I+ +M+   
Sbjct: 447 ALIDMY-SKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKP 505

Query: 111 --VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG-FDSSV-FVQNALISTYCLCGEV 166
             V P+ YT   +L       A+  GK++H +V +   ++ SV FV N LI  Y  CG+V
Sbjct: 506 YAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDV 565

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
           D AR +FD   K + V+W +M SGY    +  E   +F +M++ G +P  ++ +++L AC
Sbjct: 566 DTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYAC 625

Query: 227 AKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVIS 284
           +    +D G      + ++  +V +      + D+ A CG +  A +    +      + 
Sbjct: 626 SHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVI 685

Query: 285 WTAIVTGYINRGQVDMARQYFDQ---MPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           W A+++       V++A    ++   M   +   +T + + Y    R+++   + + M+ 
Sbjct: 686 WVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKK 745

Query: 342 SNIR 345
           S I+
Sbjct: 746 SGIK 749


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/468 (47%), Positives = 304/468 (64%)

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +++    MYAA G++G A   F  I + DV+  TA+V      G+ D AR+ FD MP+RD
Sbjct: 239 VQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRD 298

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
           +V W AMI GY+   R REAL LF EM+ +     E T+VS LTACA LGALE G+WV +
Sbjct: 299 HVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHS 358

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
                 ++  + +G ALIDMY KCG V  A  VF  M  ++ +TWT+ + GLA+NG G  
Sbjct: 359 CAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRD 418

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
            L +F +M    + P+ VT+V VL  C+  G+VDEGR  F  M   HGI+P   HYGCMV
Sbjct: 419 CLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMV 478

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRAG L++A+  I  MP++P+  VWGALL A R+H++ E+ + A  +++ ++  N+A
Sbjct: 479 DLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDA 538

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            +VLL NIYA    W     +R M+  +G+KK PGCS IE+ G VHEF  G K+HP+ KE
Sbjct: 539 AHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKE 598

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I + L EM   L+  GY+ +  EV  D+ EEDKE A+  HSEKLA+AFGL++    + IR
Sbjct: 599 IEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIR 658

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IVKNLR+C DCH   K++S V++RE+++RD+ RFHHFK G+CSCKDYW
Sbjct: 659 IVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 188/473 (39%), Gaps = 93/473 (19%)

Query: 3   SNSSISPPSTLTQETPLISPIE---TCESMHQLKQIHSQTIKLGLLTNPT------VQNK 53
           S+S     S   Q  PL  P +      S   L++IH+  +  G + +P+          
Sbjct: 77  SSSQAVGRSVSNQMRPLRDPAKLAAAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLA 136

Query: 54  LVTFCCSEKGDMKYACKVFRKIPRPSVCL-WNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112
             +    + GD+ YA  +  +  RP+  L  N++++  +R          + D+    + 
Sbjct: 137 SSSSDDDDDGDLSYARLLLPR--RPATLLAHNSLLRALARGRRPHLAFGAFRDL---PLA 191

Query: 113 PDNYTFPFLLKGFTRDIAVEFGK--------ELHCHVLKFGFDSSVFVQNALISTYCLCG 164
           PDNY+F FL++  T   A              +H   L+ G      VQ+  +S Y   G
Sbjct: 192 PDNYSFTFLVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAG 251

Query: 165 EV-------------------------------DMARGIFDVSYKDDVVTWNAMFSGYKR 193
           +V                               D AR +FD   + D V WNAM +GY  
Sbjct: 252 DVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVH 311

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
             +  E  +LF EM   G     VT+V  L+ACA+L  L+ GK  H       +  ++ L
Sbjct: 312 TGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTL 371

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             AL DMY+ CG +  A+E+F ++  ++V +WT+ V+G    G                 
Sbjct: 372 GTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGM---------------- 415

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
                           R+ L LF+ M+++ + P+  T V +L  C+  G ++ G   +  
Sbjct: 416 ---------------GRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEG---RAC 457

Query: 374 IDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            D  K  + I         ++D+Y + G ++ A      M L   +  W A++
Sbjct: 458 FDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALL 510



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 33/171 (19%)

Query: 381 NDIFVGNALIDMYCKCGDV-------------------------------EKAQRVFREM 409
            D  V +  + MY   GDV                               + A+ +F  M
Sbjct: 235 GDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGM 294

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
            ++D   W AMI G    G   ++L +F +M  A     EVT V  L+AC   G ++ G+
Sbjct: 295 PQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGK 354

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
            +        G+  +      ++D+  + G +  A+EV  +M  + N   W
Sbjct: 355 -WVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGER-NVYTW 403


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/611 (39%), Positives = 359/611 (58%), Gaps = 36/611 (5%)

Query: 115 NYTFPF-LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC---LCGEVDMAR 170
           N T+P  LL    +  +++  K++    +K    + + +   LI++         +D A 
Sbjct: 22  NTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAH 81

Query: 171 GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK 230
            +F+   + D+V +N+MF GY R     +   LF +     +LP   T   +L AC   K
Sbjct: 82  QLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAK 141

Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
               GK+ H    +  +  N  +   L +MYA C +                        
Sbjct: 142 AFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCND------------------------ 177

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
                  VD A++ FD++ E   V + A+I GY R +R  EAL+LFR++Q   ++P++ T
Sbjct: 178 -------VDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVT 230

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           ++S+L++CA LGAL+LG+W+  Y+ KN +   + V  ALIDMY KCG ++ A  VF  M 
Sbjct: 231 VLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMS 290

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            +D   W+AMIV  A++G G   + MF +M RA + PDE+T++G+L AC+HTG+VDEG  
Sbjct: 291 VRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFR 350

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           YF  M+  +GI P   HYGCMVDLLGRAG L+EA + I  +P+KP  I+W  LL +C  H
Sbjct: 351 YFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSH 410

Query: 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590
            + E+A+    QILELD  +   YV+L N+ A   +W++   LR++++ +G  K PGCS 
Sbjct: 411 GNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSS 470

Query: 591 IEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS-EVFLDVGEEDKERAV 649
           IE++ VVHEF +GD  H  +  ++  LDE+  +LK VGY+PD S  V  D+ +E+KE  +
Sbjct: 471 IEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITL 530

Query: 650 YQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHF 709
             HSEKLA++FGL+++ PG TIR+VKNLR+C DCH  AKL+S + DRE+I+RD  RFHHF
Sbjct: 531 RYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHF 590

Query: 710 KHGSCSCKDYW 720
           K G CSC DYW
Sbjct: 591 KDGKCSCGDYW 601



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 225/433 (51%), Gaps = 35/433 (8%)

Query: 14  TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK--GDMKYACKV 71
           T  + L+S +  C S+ +LKQI + +IK  L  +  +  KL+  C        M YA ++
Sbjct: 24  TYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQL 83

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           F  IP+P + L+N+M +GYSR ++    + +++  L  ++ PD+YTFP LLK      A 
Sbjct: 84  FEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAF 143

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           + GK+LHC  +K G + + +V   LI+ Y  C +VD A+ +FD   +  VV++NA+ +GY
Sbjct: 144 QQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGY 203

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            R  + +E   LF +++ + + P  VT++ VLS+CA L  LD+GK  H YVK+  +   +
Sbjct: 204 ARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYV 263

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            +  AL DMYA CG +  A+ +F ++  +D  +W+A++  Y   GQ              
Sbjct: 264 KVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQ-------------- 309

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWV 370
                             ++ +++F EM  + ++PDE T + +L AC++ G ++ G  + 
Sbjct: 310 -----------------GQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYF 352

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
            +  +   +   I     ++D+  + G + +A +   E+ ++     W  ++   + +G+
Sbjct: 353 YSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGN 412

Query: 430 GDKSLDMFSQMLR 442
            + +  + +Q+L 
Sbjct: 413 LELAKQVMNQILE 425


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/592 (39%), Positives = 350/592 (59%), Gaps = 6/592 (1%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCL--CGEVDMARGIF-DVSYKDDVVTWNAMFSGY 191
           KE H  ++  G          +IS   L   G++D A  +    S    V  +N    G+
Sbjct: 5   KEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTIRGF 64

Query: 192 KRVKQ---FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
            R ++      +  LF  M    + P + T   +   C+     D+G++ H  V +    
Sbjct: 65  SRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFE 124

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            ++ + N++   Y+ CG +  A  +F      DV+SW +++ G I  G +  A   F +M
Sbjct: 125 MDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKM 184

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
            ER+ + W  MI GY +  + +EAL LFREMQ  +  P+   +VS+L+AC+ LGAL+ G 
Sbjct: 185 TERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGC 244

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           WV  YI K  V+ D  +  ALIDMY KCG ++ A + F    ++D   +TA I GLA+NG
Sbjct: 245 WVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNG 304

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
             +++L +F QM    I PD V+Y+ VL AC+H G V++G  YFA M+  HGI P   HY
Sbjct: 305 CSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHY 364

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
            CMVDLLGRAG L EA + + +MP+KP++++WGALLGACRV+ +AEM +     ++E D 
Sbjct: 365 ACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQ 424

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
           +++  Y+LL NIYA   + ++  ++R+ +  R + + PGCS+IE+ G VHEF +GD+SH 
Sbjct: 425 NHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHE 484

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPG 668
           +T+EIYL  +E+  ++K  GY  +   V  DV EE+KE  +  HSEKLA+AFG + +  G
Sbjct: 485 KTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSG 544

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            T+RIVKN+R+C DCH   KLVS V+ R++ +RD+  FHHF+ G CSCKDYW
Sbjct: 545 STLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 212/441 (48%), Gaps = 69/441 (15%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE-KGDMKYACKVF-RKIPRPSVCLWNTM 86
           M Q K+ H+Q I  GL   P     +++F   +  GD+ YA  +  R    P+V L+NT 
Sbjct: 1   MKQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTT 60

Query: 87  IKGYSRI---DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           I+G+SR     S  + VL+++ M    + P+N+TF FL +G +  +A + G++ H  V+K
Sbjct: 61  IRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIK 120

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA----------------- 186
             F+  VFV+N++I  Y +CG ++ AR +FD S + DVV+WN+                 
Sbjct: 121 NSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSL 180

Query: 187 --------------MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
                         M SGY +  Q  E   LF EM+     P S  +V VLSAC++L  L
Sbjct: 181 FSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGAL 240

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
           D G   H Y+ +  +  + IL  AL DMYA CG +  A++ F   + +DV ++TA ++G 
Sbjct: 241 DHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGL 300

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G  + A Q F+Q                               M+   I PD  + +
Sbjct: 301 AMNGCSEEALQLFEQ-------------------------------MKGEGISPDGVSYI 329

Query: 353 SILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-L 410
           ++L AC++ G +E G  +  +  D + ++ ++     ++D+  + G +E+A++    M +
Sbjct: 330 AVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPI 389

Query: 411 RKDKFTWTAMIVGLAINGHGD 431
           + D   W A++    + G+ +
Sbjct: 390 KPDNVIWGALLGACRVYGNAE 410


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/757 (34%), Positives = 403/757 (53%), Gaps = 70/757 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H Q IK G L + +V   LV     +  + K   KVF ++   +V  W T+I GY+R
Sbjct: 113 RQLHCQCIKFGFLDDVSVGTSLVD-TYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              +   + +++ M     +P+++TF   L     +     G ++H  V+K G D ++ V
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            N+LI+ Y  CG V  AR +FD +    VVTWN+M SGY       E   +F  M    V
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAH--------------------------------R 240
             +  +   V+  CA LK+L   ++ H                                R
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV----------------IS 284
             KE   V N++   A+   +        A+++F  +K K V                IS
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411

Query: 285 -------------------WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
                               TA++  Y+  G+V+ A + F  + ++D V W+AM+ GY +
Sbjct: 412 PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQ 471

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA-LELGEWVKTYIDKNKVKNDIF 384
                 A+ +F E+    I+P+EFT  SIL  CA   A +  G+    +  K+++ + + 
Sbjct: 472 TGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLC 531

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           V +AL+ MY K G++E A+ VF+    KD  +W +MI G A +G   K+LD+F +M +  
Sbjct: 532 VSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRK 591

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           +  D VT++GV +ACTH G+V+EG +YF  M     I P + H  CMVDL  RAG L +A
Sbjct: 592 VKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKA 651

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
           ++VI+NMP    S +W  +L ACRVH+  E+  +AA++I+ + P++ A YVLL N+YA  
Sbjct: 652 MKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAES 711

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
             W    ++R+++ +R +KK PG S IE+    + F+AGD+SHP   +IY+KL+++++ L
Sbjct: 712 GDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRL 771

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           K +GY PD S V  D+ +E KE  + QHSE+LA+AFGLI++  G  + I+KNLR+C DCH
Sbjct: 772 KDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCH 831

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKH-GSCSCKDYW 720
            + KL++ + +RE++VRD  RFHHF   G CSC D+W
Sbjct: 832 LVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 140/597 (23%), Positives = 247/597 (41%), Gaps = 82/597 (13%)

Query: 41  KLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGV 100
           K  +  N   Q ++  F       +  A  +F K P      + +++ G+SR    +   
Sbjct: 19  KFRIYANGVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAK 78

Query: 101 LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY 160
            ++L++ +  +  D   F  +LK         FG++LHC  +KFGF   V V  +L+ TY
Sbjct: 79  RLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTY 138

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
                    R +FD   + +VVTW  + SGY R    DE   LF  M+ +G  P S T  
Sbjct: 139 MKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFA 198

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
             L   A+      G + H  V +  +   + + N+L ++Y  CG +  A  +F   + K
Sbjct: 199 AALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258

Query: 281 DVISWTAIVTGYINRGQVDMA--------RQYFDQMPERDYV------------------ 314
            V++W ++++GY   G +D+         R  + ++ E  +                   
Sbjct: 259 SVVTWNSMISGYAANG-LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQL 317

Query: 315 --------------LWTAMIDGYLRVNRFREALTLFRE---------------------- 338
                         + TA++  Y +     +AL LF+E                      
Sbjct: 318 HCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDG 377

Query: 339 ----------MQTSNIRPDEFTIVSILTACANLGALEL-GEWVKTYIDKNKVKNDIFVGN 387
                     M+   +RP+EFT   ILTA   +   E+  + VKT  +++       VG 
Sbjct: 378 KEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSST-----VGT 432

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           AL+D Y K G VE+A +VF  +  KD   W+AM+ G A  G  + ++ MF ++ +  I P
Sbjct: 433 ALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKP 492

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           +E T+  +L+ C  T       + F    I+  ++ +      ++ +  + G++  A EV
Sbjct: 493 NEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEV 552

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
            K    K + + W +++     H  A  A    K++ +     + V  +   ++AAC
Sbjct: 553 FKRQREK-DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFI--GVFAAC 606



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 163/343 (47%), Gaps = 17/343 (4%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           S +    P+ISP E          +H+Q +K     + TV   L+     + G ++ A K
Sbjct: 401 SVILTALPVISPSE----------VHAQVVKTNYERSSTVGTALLD-AYVKLGKVEEAAK 449

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK-GFTRDI 129
           VF  I    +  W+ M+ GY++    +  + ++ ++ K  ++P+ +TF  +L      + 
Sbjct: 450 VFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNA 509

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           ++  GK+ H   +K   DSS+ V +AL++ Y   G ++ A  +F    + D+V+WN+M S
Sbjct: 510 SMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMIS 569

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR-YVKECKIV 248
           GY +  Q  +   +F EM+++ V    VT + V +AC     ++ G++     V++CKI 
Sbjct: 570 GYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIA 629

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDMARQYFDQ 307
           P     + + D+Y+  G++  A+++  N+ N    + W  I+       + ++ R   ++
Sbjct: 630 PTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEK 689

Query: 308 ---MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
              M   D   +  + + Y     ++E   + + M   N++ +
Sbjct: 690 IIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKE 732


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/700 (35%), Positives = 396/700 (56%), Gaps = 35/700 (5%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           ++ C ++   ++IH    KLG   N  V   L+    S  G    A  +F  +P   +  
Sbjct: 225 LKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMY-SRFGFTGIARSLFDDMPFRDMGS 283

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN MI G  +  +    + +  +M    ++ +  T   +L    +   +     +H +V+
Sbjct: 284 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVI 343

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K G +  +FV NALI+ Y   G ++ AR  F   +  DVV+WN++ + Y++         
Sbjct: 344 KHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHG 403

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMY 261
            F +M+  G  P  +T+V + S  A+ +D    +  H ++ +   ++ ++++ NA+ DMY
Sbjct: 404 FFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMY 463

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           A                                 G +D A + F+ +P +D + W  +I 
Sbjct: 464 AKL-------------------------------GLLDSAHKVFEIIPVKDVISWNTLIT 492

Query: 322 GYLRVNRFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
           GY +     EA+ +++ M+    I P++ T VSIL A A++GAL+ G  +   + K  + 
Sbjct: 493 GYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLH 552

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D+FV   LID+Y KCG +  A  +F ++ ++   TW A+I    I+GH +K+L +F +M
Sbjct: 553 LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 612

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           L   + PD VT+V +LSAC+H+G V+EG+  F  M  ++GI+P+  HYGCMVDLLGRAG+
Sbjct: 613 LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGY 671

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L  A + IK+MP++P++ +WGALLGACR+H + E+ + A+ ++ E+D  N   YVLL NI
Sbjct: 672 LEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNI 731

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YA   +W+   ++R +  +RG+KKTPG S IE+N  V  F  G++SHP+ KEIY +L  +
Sbjct: 732 YANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVL 791

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
           T+ +K +GY+PD S V  DV E++KE  +  HSE+LA+AFG+IS+ P   IRI KNLR+C
Sbjct: 792 TAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVC 851

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            DCH   K +S +  RE++VRD  RFHHFK G CSC DYW
Sbjct: 852 GDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 179/408 (43%), Gaps = 39/408 (9%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           F FL    T+     F K LH  ++  G   S+F+   L++ Y   G+V ++R  FD   
Sbjct: 122 FNFLFDSSTK---TPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIP 178

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGK 236
           + DV  WN+M S Y     F E    F ++     + P   T   VL AC  L D   G+
Sbjct: 179 QKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GR 235

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
           + H +  +     N+ +  +L  MY+  G  G A  +F ++  +D+ SW A+++G I  G
Sbjct: 236 KIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 295

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
                                             +AL +  EM+   I+ +  T+VSIL 
Sbjct: 296 NA-------------------------------AQALDVLDEMRLEGIKMNFVTVVSILP 324

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
            C  LG +     +  Y+ K+ ++ D+FV NALI+MY K G++E A++ F++M   D  +
Sbjct: 325 VCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVS 384

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W ++I     N     +   F +M      PD +T V + S    +      R     + 
Sbjct: 385 WNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIM 444

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
            +  +  +      +VD+  + G L+ A +V + +P+K + I W  L+
Sbjct: 445 RRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK-DVISWNTLI 491


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/618 (37%), Positives = 369/618 (59%), Gaps = 4/618 (0%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           I+ C S+ QLK +H+Q I  GL T      KLV+     + D++YA K+F +IP+P+  +
Sbjct: 43  IDQCISLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLR-DLRYAHKLFDQIPQPNKFM 101

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           +N +IKGYS        +L+Y  M+   + P+ +T PF+LK          G  +H    
Sbjct: 102 FNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSF 161

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K G  S   VQNA+++ Y  CG +  AR +FD   +  +V+WN+M +GY ++ + +E   
Sbjct: 162 KLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVL 221

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           +F EM+  G+ P   T+V +LS   K  + D+G+  H ++    I  + I+ NAL DMYA
Sbjct: 222 MFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYA 281

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG +  A  +F  + +KDV+SWT ++  Y N G +D A ++F+QMP ++ V W ++I  
Sbjct: 282 KCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWC 341

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           +++   + EA+ LF  M  S +  ++ T+V+IL++C+++G L LG+   +YI  N +   
Sbjct: 342 HVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLS 401

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
             + NA+IDMY KCG ++ A  VF  M  K+  +W  +I  LA++G+G ++++MF +M  
Sbjct: 402 ATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQA 461

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
           + + PDE+T+ G+LSAC+H+G+VD G+ YF  M +  GI P+  HY CMVDLLGR G L 
Sbjct: 462 SGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLG 521

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           EA+ +IK MP+KP+ +VW ALLGACR + +  + +   KQ+LEL   N  +YVLL N+Y+
Sbjct: 522 EAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYS 581

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
              RWD+ + + +++   GIKK    S IE++G  ++F+  DK H  +  IY  L ++  
Sbjct: 582 ESQRWDDMKNIWKILDQNGIKKCRAISFIEIDGCCYQFMVDDKRHGASTSIYSMLGQLMD 641

Query: 623 DLKFVGY---MPDISEVF 637
            LK  GY     D+ E++
Sbjct: 642 HLKSAGYPCKHLDVEEIY 659


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/588 (40%), Positives = 357/588 (60%), Gaps = 33/588 (5%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK++HC VLK GF+  VFV  +L+  Y   G V  AR +FD     D  +WNAM SGY +
Sbjct: 13  GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQ 72

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                E   +  EM  +GV   ++T+  VL  CA++ D+  GK  H YV +  +   L +
Sbjct: 73  NGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFV 132

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            NAL +MYA  G +G A ++FG +  KDV+S                             
Sbjct: 133 SNALINMYAKFGSLGHAQKVFG-LLIKDVVS----------------------------- 162

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKT 372
             W  +I GY +     EA+ ++  M+    I P++ T VSIL A +++GAL+ G  +  
Sbjct: 163 --WNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHG 220

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            + KN + +D+FVG  LIDMY KCG ++ A  +F ++ RK+   W AMI    ++G G+K
Sbjct: 221 QVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEK 280

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L++F +M    + PD +T+V +LSAC+H+G+V + +  F  M  ++GI+P+  HYGCMV
Sbjct: 281 ALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMV 340

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRAG L  A   IK MP++P++  WGALL ACR+H + E+ + A++++ E+D +N  
Sbjct: 341 DLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVG 400

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVLL NIYA   +W+   ++R +  DRG++K PG S I +N  V  F  G+++HP+ +E
Sbjct: 401 YYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEE 460

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY +L ++TS +K +GY+PD   V  DV E++KE  +  HSE+LA+A+G+IS+ P   IR
Sbjct: 461 IYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIR 520

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I KNLR+C DCH + K +S++ +RE+IVRD +RFHHFK G+CSC DYW
Sbjct: 521 IFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 193/410 (47%), Gaps = 36/410 (8%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           ++ C  +   K+IH   +KLG   +  V   LV    S  G +  A K+F  +P      
Sbjct: 4   VKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMY-SRFGLVGDARKLFDDMPARDRGS 62

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN MI GY +  +    + I  +M    V+ D  T   +L    +   +  GK +H +V+
Sbjct: 63  WNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVI 122

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K G +  +FV NALI+ Y   G +  A+ +F +  K DVV+WN + +GY +     E  +
Sbjct: 123 KHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIK-DVVSWNTLITGYAQNGLASEAIE 181

Query: 203 LFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
           ++  M E + ++P   T V +L A + +  L  G R H  V +  +  ++ +   L DMY
Sbjct: 182 VYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMY 241

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
             CG++  A+ +F  +  K+ + W A+++ Y   G                        D
Sbjct: 242 GKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHG------------------------D 277

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVK 380
           G        +AL LFREM+   ++PD  T VS+L+AC++ G +   +W    +++   +K
Sbjct: 278 G-------EKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIK 330

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
             +     ++D++ + G++E A    ++M ++ D   W A++    I+G+
Sbjct: 331 PSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGN 380



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 175/351 (49%), Gaps = 50/351 (14%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           V+ AC  L D   GK+ H  V +     ++ +  +L  MY+  G +G A ++F ++  +D
Sbjct: 3   VVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARD 59

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
             SW A+++GY   G                                  EAL +  EM+ 
Sbjct: 60  RGSWNAMISGYCQNGNA-------------------------------AEALDIADEMRL 88

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             ++ D  T+ S+L  CA +G +  G+ +  Y+ K+ ++ ++FV NALI+MY K G +  
Sbjct: 89  EGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGH 148

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM-LRASIIPDEVTYVGVLSACT 460
           AQ+VF  +L KD  +W  +I G A NG   ++++++  M     IIP++ T+V +L A +
Sbjct: 149 AQKVFG-LLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYS 207

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           H G + +G      + I++ +  +     C++D+ G+ G L++A+ +   +P K NS+ W
Sbjct: 208 HVGALQQGMRIHGQV-IKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRK-NSVPW 265

Query: 521 GALLGACRVHRDAEMA-----EMAAKQILELDPDNEAVYVLLCNIYAACNR 566
            A++    VH D E A     EM A+++    PD    ++   ++ +AC+ 
Sbjct: 266 NAMISCYGVHGDGEKALELFREMKAERV---KPD----HITFVSLLSACSH 309



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 135/283 (47%), Gaps = 5/283 (1%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K IH   IK GL     V N L+    ++ G + +A KVF  + +  V  WNT+I GY++
Sbjct: 115 KLIHLYVIKHGLEFELFVSNALINMY-AKFGSLGHAQKVFGLLIK-DVVSWNTLITGYAQ 172

Query: 93  IDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
                  + +YL M +  ++ P+  T+  +L  ++   A++ G  +H  V+K    S VF
Sbjct: 173 NGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVF 232

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V   LI  Y  CG++D A  +F    + + V WNAM S Y      ++  +LF EM+ + 
Sbjct: 233 VGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAER 292

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFA 270
           V P  +T V +LSAC+    +   +     + +E  I P+L     + D++   GE+  A
Sbjct: 293 VKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMA 352

Query: 271 LEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
                 +    D  +W A++      G +++ +   +++ E D
Sbjct: 353 FNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVD 395


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/567 (40%), Positives = 337/567 (59%), Gaps = 39/567 (6%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N ++S Y     ++ A+  F+     D  +WN M +G+ + +Q D+ R LF       ++
Sbjct: 42  NTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFL------IM 95

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           PT                                  N++  NA+   Y  CG++  AL++
Sbjct: 96  PTK---------------------------------NVVTWNAMISGYVECGDLDSALKL 122

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F     K V++WTA++TGY+  G++ +A + F++MPE++ V W AMI GY+  +R  + +
Sbjct: 123 FEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGV 182

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LFR M    I+P+  T+ S L  C+ L AL+LG  V   + K+ + +D   G +LI MY
Sbjct: 183 KLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMY 242

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
           CKCG +E   ++F ++ R+D  TW AMI G A +G G K+L +F +M+   + PD +T+V
Sbjct: 243 CKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFV 302

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            VL AC H G  D G +YF  M   +G+     HY CMVDLLGRAG L EA+++I+ MP 
Sbjct: 303 AVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPF 362

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           KP++ V+G LLGACR+H++ EMAE A++++L LDP +   YV L N+YAA  RWD+   +
Sbjct: 363 KPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARV 422

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R+ +    + KTPG S IE+  + H+F +GDK HP+   I+ KL E+   +K  GY+PD+
Sbjct: 423 RKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDL 482

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
                DVGEE KE+ +  HSEKLA+A+GLI   PG  IR+ KNLR+C DCHR  K +S +
Sbjct: 483 EFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQI 542

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
             RE+IVRD TRFHHFK G CSC DYW
Sbjct: 543 ERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 148/354 (41%), Gaps = 70/354 (19%)

Query: 45  LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYL 104
           L      N ++     ++G +K A ++F KIP P    +NTM+  Y R  + +     + 
Sbjct: 3   LKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFE 62

Query: 105 DMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCG 164
           DM   D    N     ++ GF ++  ++  ++L   +       +V   NA+IS Y  CG
Sbjct: 63  DMPIKDTPSWNT----MITGFAQNQQMDKARDLFLIMPT----KNVVTWNAMISGYVECG 114

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK-------------- 210
           ++D A  +F+ +    VV W AM +GY ++ +     +LF +M  K              
Sbjct: 115 DLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIE 174

Query: 211 -----------------GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                            G+ P S T+   L  C++L  L +G++ H+ V +  +  +   
Sbjct: 175 NHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTA 234

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             +L  MY  CG +    ++F  +  +DV++W A+++GY   G+   A   FD+M E+  
Sbjct: 235 GTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEK-- 292

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                         ++PD  T V++L AC + G  +LG
Sbjct: 293 -----------------------------GMKPDWITFVAVLMACNHAGFTDLG 317



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 1/212 (0%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G +  A ++F K+P  ++  WN MI GY      ++GV ++  M+   ++P++ T    L
Sbjct: 145 GRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSAL 204

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
            G +   A++ G+++H  V K           +LIS YC CG ++    +F    + DVV
Sbjct: 205 LGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVV 264

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG-KRAHRY 241
           TWNAM SGY +  +  +   LF EM  KG+ P  +T V VL AC      D+G K  H  
Sbjct: 265 TWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSM 324

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEI 273
            K+  +V        + D+    G++  A+++
Sbjct: 325 AKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDL 356



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 140/314 (44%), Gaps = 18/314 (5%)

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           + L  M    G++  A E+F  I   D +S+  +++ Y+    ++ A+ +F+ MP +D  
Sbjct: 11  SVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTP 70

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL-GALELGEWVKTY 373
            W  MI G+ +  +  +A  LF  M T N+      ++S    C +L  AL+L       
Sbjct: 71  SWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWN-AMISGYVECGDLDSALKL------- 122

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
            +K   K+ +    A+I  Y K G +  A+R+F +M  K+  TW AMI G   N   +  
Sbjct: 123 FEKAPFKS-VVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDG 181

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           + +F  M+   I P+  T    L  C+    +  GR+    +  +  +  +      ++ 
Sbjct: 182 VKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVH-QLVCKSPLCDDTTAGTSLIS 240

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNE 551
           +  + G L +  ++   +P + + + W A++     H + + A     +++E  + PD  
Sbjct: 241 MYCKCGVLEDGWKLFVQVPRR-DVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPD-- 297

Query: 552 AVYVLLCNIYAACN 565
             ++    +  ACN
Sbjct: 298 --WITFVAVLMACN 309


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/468 (47%), Positives = 304/468 (64%)

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +++    MYAA G++G A   F  I + DV+  TA+V      G+ D AR+ FD MP+RD
Sbjct: 239 VQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRD 298

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
           +V W AMI GY+   R REAL LF EM+ +     E T+VS LTACA LGALE G+WV +
Sbjct: 299 HVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHS 358

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
                 ++  + +G ALIDMY KCG V  A  VF  M  ++ +TWT+ + GLA+NG G  
Sbjct: 359 CAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRD 418

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
            L +F +M    + P+ VT+V VL  C+  G+VDEGR  F  M   HGI+P   HYGCMV
Sbjct: 419 CLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMV 478

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRAG L++A+  I  MP++P+  VWGALL A R+H++ E+ + A  +++ ++  N+A
Sbjct: 479 DLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDA 538

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            +VLL NIYA    W     +R M+  +G+KK PGCS IE+ G VHEF  G K+HP+ KE
Sbjct: 539 AHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKE 598

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I + L EM   L+  GY+ +  EV  D+ EEDKE A+  HSEKLA+AFGL++    + IR
Sbjct: 599 IEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIR 658

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IVKNLR+C DCH   K++S V++RE+++RD+ RFHHFK G+CSCKDYW
Sbjct: 659 IVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 188/473 (39%), Gaps = 93/473 (19%)

Query: 3   SNSSISPPSTLTQETPLISPIE---TCESMHQLKQIHSQTIKLGLLTNPT------VQNK 53
           S+S     S   Q  PL  P +      S   L++IH+  +  G + +P+          
Sbjct: 77  SSSQAVGRSVSNQMRPLRDPAKLAAAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLA 136

Query: 54  LVTFCCSEKGDMKYACKVFRKIPRPSVCL-WNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112
             +    + GD+ YA  +  +  RP+  L  N++++  +R          + D+    + 
Sbjct: 137 SSSSDDDDDGDLSYARLLLPR--RPATLLAHNSLLRALARGRRPHLAFGAFRDL---PLV 191

Query: 113 PDNYTFPFLLKGFTRDIAVEFGK--------ELHCHVLKFGFDSSVFVQNALISTYCLCG 164
           PDNY+F FL++  T   A              +H   L+ G      VQ+  +S Y   G
Sbjct: 192 PDNYSFTFLVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAG 251

Query: 165 EV-------------------------------DMARGIFDVSYKDDVVTWNAMFSGYKR 193
           +V                               D AR +FD   + D V WNAM +GY  
Sbjct: 252 DVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVH 311

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
             +  E  +LF EM   G     VT+V  L+ACA+L  L+ GK  H       +  ++ L
Sbjct: 312 TGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTL 371

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             AL DMY+ CG +  A+E+F ++  ++V +WT+ V+G    G                 
Sbjct: 372 GTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGM---------------- 415

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
                           R+ L LF+ M+++ + P+  T V +L  C+  G ++ G   +  
Sbjct: 416 ---------------GRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEG---RAC 457

Query: 374 IDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            D  K  + I         ++D+Y + G ++ A      M L   +  W A++
Sbjct: 458 FDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALL 510



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 33/171 (19%)

Query: 381 NDIFVGNALIDMYCKCGDV-------------------------------EKAQRVFREM 409
            D  V +  + MY   GDV                               + A+ +F  M
Sbjct: 235 GDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGM 294

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
            ++D   W AMI G    G   ++L +F +M  A     EVT V  L+AC   G ++ G+
Sbjct: 295 PQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGK 354

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
            +        G+  +      ++D+  + G +  A+EV  +M  + N   W
Sbjct: 355 -WVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGER-NVYTW 403


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/621 (39%), Positives = 367/621 (59%), Gaps = 20/621 (3%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS---VFVQNALISTYCLCGEVDMARGIF- 173
           F  LL+   R+ ++  GK+LH  +L  G  SS    F+ NAL   Y  CG    AR +F 
Sbjct: 18  FRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFY 77

Query: 174 --DVSYKDDVVTWNAMFSGY-KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK 230
               S+KD V  W  + +   +   +  E    F EM ++GV+   V ++ V   C +++
Sbjct: 78  QIPRSHKD-VTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVE 136

Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
           DL +G++A   + +  +   + + NA+ +MY  CG +     +F  +  ++V+SW+ ++ 
Sbjct: 137 DLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLE 196

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEF 349
           G +    V+  R  FD+MPER+ V WT MI GY+     RE   L  EM     +  +  
Sbjct: 197 GVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFV 256

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKN-DIFVGNALIDMYCKCGDVEKAQRVFRE 408
           T+ SIL+ACA  G + +G WV  Y  K   +   I VG AL+DMY KCG ++ A +VF+ 
Sbjct: 257 TLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKY 316

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           + +++   W AM+ GLA++G G   LD+F +M+  +  PD++T++ VLSAC+H+G+VD+G
Sbjct: 317 LPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEAK-PDDLTFMAVLSACSHSGLVDQG 375

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
             YF  +  ++G  P   HY CMVD+LGRAGHL EA+ +IK MPM PN +V G+LLG+C 
Sbjct: 376 YHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCN 435

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
            H   ++ E   ++++++D  N   +VLL N+Y    + D    LRQ++  +GI+K PG 
Sbjct: 436 AHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGV 495

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE------ 642
           S I + G +H+F AGDKSHP TKEIY  L+ M   L+  GY+P+ +       +      
Sbjct: 496 SSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSS 555

Query: 643 ---EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
              E+KE+A++ HSEKLA+ FG IS+ PG  + I KNLR+C DCH   K+VS +Y+RE++
Sbjct: 556 EEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIYNREIV 615

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           +RD+ RFH FKHGSCSC DYW
Sbjct: 616 IRDRNRFHCFKHGSCSCSDYW 636



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 114/504 (22%), Positives = 204/504 (40%), Gaps = 98/504 (19%)

Query: 28  SMHQLKQIHSQTIKLGLLT---NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP--SVCL 82
           S+   K++H+  +  GL +   N  + N L     S  G    A  +F +IPR    V  
Sbjct: 30  SLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYAS-CGVTSSARHLFYQIPRSHKDVTD 88

Query: 83  WNTMIKGYSRIDSHKN-GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           W T++    +  +  + G   + +M K  V  D+     +    TR   +  G++    +
Sbjct: 89  WTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCL 148

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           +K G    V V NA+++ Y  CG V+  R +F    + +VV+W+ +  G  + +  +  R
Sbjct: 149 VKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGR 208

Query: 202 KLFGEM--------------------ERKGVLPTS------------VTIVLVLSACAKL 229
            +F EM                     R+G L               VT+  +LSACA+ 
Sbjct: 209 VVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQS 268

Query: 230 KDLDVGKRAHRY-VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
            D+ +G+  H Y +K      ++++  AL DMYA CG +  A ++F  +  ++V++W A+
Sbjct: 269 GDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAM 328

Query: 289 VTGYINRGQ----------------------------------VDMARQYFDQMPERDYV 314
           + G    G+                                  VD    YF  + E +Y 
Sbjct: 329 LGGLAMHGRGKFVLDIFPKMIEEAKPDDLTFMAVLSACSHSGLVDQGYHYFRSL-ESEYG 387

Query: 315 L------WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                  +  M+D   R     EA+ L ++M      P+E  + S+L +C   G L+LGE
Sbjct: 388 TTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMC---PNEVVLGSLLGSCNAHGKLQLGE 444

Query: 369 WVKT---YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            +      +D +  +  + + N    MY   G  +KA  + R++L+         +  + 
Sbjct: 445 RILQELIQMDGHNTEYHVLLSN----MYVLEGKQDKANSL-RQILKSKGIRKVPGVSSIY 499

Query: 426 INGH------GDKSLDMFSQMLRA 443
           + G+      GDKS  +  ++  A
Sbjct: 500 VGGNIHQFSAGDKSHPLTKEIYHA 523


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/694 (37%), Positives = 382/694 (55%), Gaps = 47/694 (6%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC------KVFRKIPRPSVCLWNTMIK 88
            H   +KLGL     V + L+        DM   C      +V       +V  WN+MI 
Sbjct: 321 FHGLALKLGLCGELKVNSSLL--------DMYSKCGYLCEARVLFDTNEKNVISWNSMIG 372

Query: 89  GYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF- 146
           GYS+    +    +   M   D V+ +  T   +L     +I     KE+H + L+ GF 
Sbjct: 373 GYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFI 432

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
            S   V NA ++ Y  CG +  A G+F       V +WNA+  G+ +     +   L+  
Sbjct: 433 QSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLL 492

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M   G+ P   TI  +LSACA+LK L  GK  H            +L N           
Sbjct: 493 MRGSGLEPDLFTIASLLSACARLKSLSCGKEIH----------GSMLRN----------- 531

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
            GF L+ F  I         ++V+ Y+  G++ +A+ +FD M E++ V W  MI+G+ + 
Sbjct: 532 -GFELDEFICI---------SLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQN 581

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
               +AL +F +M +S I PDE +I+  L AC+ + AL LG+ +  +  K+ +    FV 
Sbjct: 582 EFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVT 641

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
            +LIDMY KCG +E++Q +F  +  K + TW  +I G  I+GHG K++++F  M  A   
Sbjct: 642 CSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFR 701

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD VT++ +L+AC H G+V EG EY   M    GI+P   HY C+VD+LGRAG LNEALE
Sbjct: 702 PDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALE 761

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
           ++  +P KP+S +W +LL +CR +RD ++ E  A ++LEL PD    YVL+ N YA   +
Sbjct: 762 LVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGK 821

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           WD  R++RQ + + G++K  GCS IE+ G V  F+ GD+S  Q+ +I     E+   +  
Sbjct: 822 WDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINK 881

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
           +GY PD S V  ++ E++K + +  HSEKLA++FGL+++  G T+R+ KNLR+CVDCH  
Sbjct: 882 IGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNA 941

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            KLVS +  RE+IVRD  RFHHFK+G CSC DYW
Sbjct: 942 IKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 158/598 (26%), Positives = 261/598 (43%), Gaps = 120/598 (20%)

Query: 46  TNPTVQN------KLVTF--CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHK 97
           T+P  QN      +LVT    C    D   +C VF    R ++ LWN ++ GY R    +
Sbjct: 121 TSPHFQNDVVLITRLVTMYSICDSPYD---SCLVFNASRRKNLFLWNALLSGYLRNSLFR 177

Query: 98  NGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
           + V ++++M+  ++  PDN+T P ++K       V  G+ +H   LK    S VFV NAL
Sbjct: 178 DAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNAL 237

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER--KGVLP 214
           I+ Y   G V+ A  +FD   + ++V+WN++         F+E+  LF  +    +G++P
Sbjct: 238 IAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMP 297

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
              T+V V+  CA+  ++ +G   H    +  +   L + ++L DMY+ CG +  A  +F
Sbjct: 298 DVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLF 357

Query: 275 GNIKNKDVISWTAIVTGYIN----RGQVDMARQ-------------YFDQMP-------- 309
            +   K+VISW +++ GY      RG  ++ R+               + +P        
Sbjct: 358 -DTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQF 416

Query: 310 ----------------ERDYVLWTAMIDGYLRVNRFREALTLFREMQT------------ 341
                           + D ++  A + GY +      A  +F  M++            
Sbjct: 417 LKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGG 476

Query: 342 -------------------SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
                              S + PD FTI S+L+ACA L +L  G+ +   + +N  + D
Sbjct: 477 HVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELD 536

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
            F+  +L+ +Y +CG +  A+  F  M  K+   W  MI G + N     +LDMF QML 
Sbjct: 537 EFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLS 596

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN---------EAHYGCM-- 491
           + I PDE++ +G L AC+    +  G+E        H  E +          A  GCM  
Sbjct: 597 SKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQ 656

Query: 492 -------VDLLGRA------------GHLNEALEVIKNMP---MKPNSIVWGALLGAC 527
                  V L G              GH  +A+E+ K+M     +P+S+ + ALL AC
Sbjct: 657 SQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTAC 714



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 170/363 (46%), Gaps = 41/363 (11%)

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPN-LILENALTDMYAACGEMGFALEIFGNI 277
           I L+L  C + K++++G++ H ++       N ++L   L  MY+ C     +  +F   
Sbjct: 96  IGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNAS 155

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
           + K++                                LW A++ GYLR + FR+A+ +F 
Sbjct: 156 RRKNLF-------------------------------LWNALLSGYLRNSLFRDAVFVFV 184

Query: 338 EM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
           EM   +   PD FT+  ++ AC  +  + LGE V  +  K KV +D+FVGNALI MY K 
Sbjct: 185 EMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKF 244

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA--SIIPDEVTYVG 454
           G VE A +VF +M +++  +W +++     NG  ++S  +F  +L     ++PD  T V 
Sbjct: 245 GFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVT 304

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           V+  C   G V  G   F  + ++ G+         ++D+  + G+L EA  +      +
Sbjct: 305 VIPLCARQGEVRLGM-VFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT--NE 361

Query: 515 PNSIVWGALLGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
            N I W +++G     RD   A E+  K  ++++   +   V L N+   C     F +L
Sbjct: 362 KNVISWNSMIGGYSKDRDFRGAFELLRK--MQMEDKVKVNEVTLLNVLPVCEEEIQFLKL 419

Query: 574 RQM 576
           +++
Sbjct: 420 KEI 422


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/468 (47%), Positives = 304/468 (64%)

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +++    MYAA G++G A   F  I + DV+  TA+V      G+ D AR+ FD MP+RD
Sbjct: 232 VQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRD 291

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
           +V W AMI GY+   R REAL LF EM+ +     E T+VS LTACA LGALE G+WV +
Sbjct: 292 HVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHS 351

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
                 ++  + +G ALIDMY KCG V  A  VF  M  ++ +TWT+ + GLA+NG G  
Sbjct: 352 CAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRD 411

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
            L +F +M    + P+ VT+V VL  C+  G+VDEGR  F  M   HGI+P   HYGCMV
Sbjct: 412 CLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMV 471

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRAG L++A+  I  MP++P+  VWGALL A R+H++ E+ + A  +++ ++  N+A
Sbjct: 472 DLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDA 531

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            +VLL NIYA    W     +R M+  +G+KK PGCS IE+ G VHEF  G K+HP+ KE
Sbjct: 532 AHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKE 591

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I + L EM   L+  GY+ +  EV  D+ EEDKE A+  HSEKLA+AFGL++    + IR
Sbjct: 592 IEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIR 651

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IVKNLR+C DCH   K++S V++RE+++RD+ RFHHFK G+CSCKDYW
Sbjct: 652 IVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 188/473 (39%), Gaps = 93/473 (19%)

Query: 3   SNSSISPPSTLTQETPLISPIE---TCESMHQLKQIHSQTIKLGLLTNPT------VQNK 53
           S+S     S   Q  PL  P +      S   L++IH+  +  G + +P+          
Sbjct: 70  SSSQAVGRSVSNQMRPLRDPAKLAAAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLA 129

Query: 54  LVTFCCSEKGDMKYACKVFRKIPRPSVCL-WNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112
             +    + GD+ YA  +  +  RP+  L  N++++  +R          + D+    + 
Sbjct: 130 SSSSDDDDDGDLSYARLLLPR--RPATLLAHNSLLRALARGRRPHLAFGAFRDL---PLA 184

Query: 113 PDNYTFPFLLKGFTRDIAVEFGK--------ELHCHVLKFGFDSSVFVQNALISTYCLCG 164
           PDNY+F FL++  T   A              +H   L+ G      VQ+  +S Y   G
Sbjct: 185 PDNYSFTFLVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAG 244

Query: 165 EV-------------------------------DMARGIFDVSYKDDVVTWNAMFSGYKR 193
           +V                               D AR +FD   + D V WNAM +GY  
Sbjct: 245 DVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVH 304

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
             +  E  +LF EM   G     VT+V  L+ACA+L  L+ GK  H       +  ++ L
Sbjct: 305 TGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTL 364

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             AL DMY+ CG +  A+E+F ++  ++V +WT+ V+G    G                 
Sbjct: 365 GTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGM---------------- 408

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
                           R+ L LF+ M+++ + P+  T V +L  C+  G ++ G   +  
Sbjct: 409 ---------------GRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEG---RAC 450

Query: 374 IDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            D  K  + I         ++D+Y + G ++ A      M L   +  W A++
Sbjct: 451 FDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALL 503



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 33/171 (19%)

Query: 381 NDIFVGNALIDMYCKCGDV-------------------------------EKAQRVFREM 409
            D  V +  + MY   GDV                               + A+ +F  M
Sbjct: 228 GDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGM 287

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
            ++D   W AMI G    G   ++L +F +M  A     EVT V  L+AC   G ++ G+
Sbjct: 288 PQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGK 347

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
            +        G+  +      ++D+  + G +  A+EV  +M  + N   W
Sbjct: 348 -WVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGER-NVYTW 396


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/659 (38%), Positives = 376/659 (57%), Gaps = 48/659 (7%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G +  A +VF ++P  +V  W  M++GY +         ++  M + +V     ++  +L
Sbjct: 174 GMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVML 229

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
            G  ++  ++      C +     +  V  +  +I  YC  G +  AR +FD   + +VV
Sbjct: 230 GGLLQEGRIDEA----CRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVV 285

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +W  M +GY + +Q D  RKLF  M  K                                
Sbjct: 286 SWTTMITGYVQNQQVDIARKLFEVMPEK-------------------------------- 313

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
                  N +   A+   Y  CG +  A E+F  +  K V++  A++  +   G+V  AR
Sbjct: 314 -------NEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKAR 366

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
           Q FDQM E+D   W+AMI  Y R     +AL LFR MQ   IRP+  +++S+L+ CA L 
Sbjct: 367 QVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLA 426

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            L+ G  +   + +++   D++V + L+ MY KCG++ KA++VF     KD   W ++I 
Sbjct: 427 NLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIIT 486

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A +G G ++L +F  M  + I+PD+VT+VGVLSAC++TG V +G E F  M  ++ +E
Sbjct: 487 GYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVE 546

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
               HY CMVDLLGRAG LNEA+++I+ MPM+ ++I+WGALLGACR H   ++AE+AAK+
Sbjct: 547 QKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKK 606

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           +L L+P N   ++LL NIYA+  RWD+  ELR+ + DR + K PGCS I +   VH+F  
Sbjct: 607 LLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTG 666

Query: 603 GDKS-HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
           GD S HP+  EI   L+ ++  L+  GY PD S V  DV EE+K +++  HSEKLA+A+G
Sbjct: 667 GDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYG 726

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           L+    G+ IR++KNLR+C DCH   KL++ V  RE+I+RD  RFHHFK GSCSC+DYW
Sbjct: 727 LLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 193/415 (46%), Gaps = 41/415 (9%)

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           +F   + +  +N+LI+ Y   G+++ AR +FD     ++++WN++ +GY + K+  E + 
Sbjct: 91  RFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQN 150

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           +F +M  +  +  +  +   ++     +  +V  R            N++   A+   Y 
Sbjct: 151 MFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPE--------RNVVSWTAMVRGYV 202

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
             G +  A  +F  +  K+V+SWT ++ G +  G++D A + FD MPE+D V  T MI G
Sbjct: 203 KEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGG 262

Query: 323 YLRVNRFREALTLFREMQTSNI---------------------------RPDEFTIVSIL 355
           Y +V R  EA  LF EM   N+                             +E +  ++L
Sbjct: 263 YCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAML 322

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
               N G L+         +   +K+ +   NA+I  + + G+V KA++VF +M  KD+ 
Sbjct: 323 KGYTNCGRLDEA---SELFNAMPIKS-VVACNAMILCFGQNGEVPKARQVFDQMREKDEG 378

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           TW+AMI      G    +L++F  M R  I P+  + + VLS C     +D GRE  A +
Sbjct: 379 TWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL 438

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            ++   + +      ++ +  + G+L +A +V     +K + ++W +++     H
Sbjct: 439 -VRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQH 491



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 173/376 (46%), Gaps = 45/376 (11%)

Query: 49  TVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK 108
           T  N +  +C  + G +  A  +F ++PR +V  W TMI GY         V I   + +
Sbjct: 255 TRTNMIGGYC--QVGRLVEARMLFDEMPRRNVVSWTTMITGY----VQNQQVDIARKLFE 308

Query: 109 SDVRPDNYTFPFLLKGFTRDIAVEFGKEL-HCHVLKFGFDSSVFVQNALISTYCLCGEVD 167
                +  ++  +LKG+T    ++   EL +   +K     SV   NA+I  +   GEV 
Sbjct: 309 VMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIK-----SVVACNAMILCFGQNGEVP 363

Query: 168 MARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
            AR +FD   + D  TW+AM   Y+R     +  +LF  M+R+G+ P   +++ VLS CA
Sbjct: 364 KARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCA 423

Query: 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
            L +LD G+  H  +   +   ++ + + L  MY  CG +  A ++F     KDV+ W +
Sbjct: 424 GLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNS 483

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           I+TGY   G                           L V    EAL +F +M  S I PD
Sbjct: 484 IITGYAQHG---------------------------LGV----EALRVFHDMHFSGIMPD 512

Query: 348 EFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           + T V +L+AC+  G ++ G E   +   K +V+  I     ++D+  + G + +A  + 
Sbjct: 513 DVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572

Query: 407 REM-LRKDKFTWTAMI 421
            +M +  D   W A++
Sbjct: 573 EKMPMEADAIIWGALL 588



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 119/247 (48%), Gaps = 2/247 (0%)

Query: 57  FCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
            C  + G++  A +VF ++       W+ MIK Y R     + + ++  M +  +RP+  
Sbjct: 354 LCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFP 413

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           +   +L        ++ G+E+H  +++  FD  V+V + L+S Y  CG +  A+ +FD  
Sbjct: 414 SLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRF 473

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
              DVV WN++ +GY +     E  ++F +M   G++P  VT V VLSAC+   ++  G 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGL 533

Query: 237 RAHRYVKECKIVPNLILENA-LTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYIN 294
                ++    V   I   A + D+    G++  A+++   +    D I W A++     
Sbjct: 534 EIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRT 593

Query: 295 RGQVDMA 301
             ++D+A
Sbjct: 594 HMKLDLA 600



 Score = 46.2 bits (108), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 85/185 (45%), Gaps = 6/185 (3%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           LIS +  C  +  L   ++IH+Q ++     +  V + L++    + G++  A +VF + 
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYI-KCGNLAKAKQVFDRF 473

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
               V +WN++I GY++       + ++ DM  S + PD+ TF  +L   +    V+ G 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGL 533

Query: 136 ELHCHV-LKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKR 193
           E+   +  K+  +  +     ++      G+++ A  + + +  + D + W A+    + 
Sbjct: 534 EIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRT 593

Query: 194 VKQFD 198
             + D
Sbjct: 594 HMKLD 598


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/618 (37%), Positives = 365/618 (59%), Gaps = 33/618 (5%)

Query: 104 LDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           LD++    + PD   +  LLK  T+   ++ GK +H HVL   F   + +QN+L+  Y  
Sbjct: 62  LDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYAR 121

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
           CG ++ AR +FD     D+V+W +M +GY +  +  +   LF  M   G  P   T+  +
Sbjct: 122 CGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSL 181

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           +  C  +   + G++ H    +     N+ + ++L DMYA CG +G A+ +F        
Sbjct: 182 VKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVF-------- 233

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
                                  D++  ++ V W A+I GY R     EAL LF  MQ  
Sbjct: 234 -----------------------DKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQRE 270

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
             RP EFT  ++L++C+++G LE G+W+  ++ K+  K   +VGN L+ MY K G +  A
Sbjct: 271 GYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDA 330

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           ++VF ++++ D  +  +M++G A +G G ++   F +M+R  I P+++T++ VL+AC+H 
Sbjct: 331 EKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHA 390

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
            ++DEG+ YF  M  ++ IEP  +HY  +VDLLGRAG L++A   I+ MP++P   +WGA
Sbjct: 391 RLLDEGKHYFGLMR-KYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGA 449

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LLGA ++H++ EM   AA+++ ELDP     + LL NIYA+  RW++  ++R+++ D G+
Sbjct: 450 LLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGV 509

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK P CS +E+   VH FVA D +HPQ ++I+   +++   +K +GY+PD S V L V +
Sbjct: 510 KKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQ 569

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           ++KE  +  HSEKLA++F L+++ PG TIRI+KN+R+C DCH   K VS+V  RE+IVRD
Sbjct: 570 QEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRD 629

Query: 703 KTRFHHFKHGSCSCKDYW 720
             RFHHF  G CSC DYW
Sbjct: 630 TNRFHHFCDGFCSCGDYW 647



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 196/420 (46%), Gaps = 41/420 (9%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           S+ P  TL       + ++ C  + +LK+   +H   +      +  +QN L+ F  +  
Sbjct: 69  SLEPDRTLYN-----TLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLL-FMYARC 122

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A ++F ++P   +  W +MI GY++ D   + +L++  ML     P+ +T   L+
Sbjct: 123 GSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLV 182

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K      +   G+++H    K+G  S+VFV ++L+  Y  CG +  A  +FD     + V
Sbjct: 183 KCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEV 242

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNA+ +GY R  + +E   LF  M+R+G  PT  T   +LS+C+ +  L+ GK  H ++
Sbjct: 243 SWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHL 302

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +        + N L  MYA  G +  A ++F  +   DV+S  +++ GY   G    A 
Sbjct: 303 MKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAA 362

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
           Q FD+M                   RF              I P++ T +S+LTAC++  
Sbjct: 363 QQFDEMI------------------RF-------------GIEPNDITFLSVLTACSHAR 391

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            L+ G+     + K  ++  +     ++D+  + G +++A+    EM +      W A++
Sbjct: 392 LLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALL 451



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 151/341 (44%), Gaps = 10/341 (2%)

Query: 15  QETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKV 71
            E  L S ++ C  M      +QIH+   K G  +N  V + LV    +  G +  A  V
Sbjct: 174 NEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMY-ARCGYLGEAMLV 232

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           F K+   +   WN +I GY+R    +  + +++ M +   RP  +T+  LL   +    +
Sbjct: 233 FDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCL 292

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           E GK LH H++K       +V N L+  Y   G +  A  +FD   K DVV+ N+M  GY
Sbjct: 293 EQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGY 352

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            +     E  + F EM R G+ P  +T + VL+AC+  + LD GK     +++  I P +
Sbjct: 353 AQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKV 412

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDM----ARQYFD 306
                + D+    G +  A      +  +  ++ W A++         +M    A++ F+
Sbjct: 413 SHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFE 472

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
             P       T + + Y    R+ +   + + M+ S ++ +
Sbjct: 473 LDPSYPGT-HTLLANIYASAGRWEDVAKVRKIMKDSGVKKE 512


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/659 (38%), Positives = 376/659 (57%), Gaps = 48/659 (7%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G +  A +VF ++P  +V  W  M++GY +         ++  M + +V     ++  +L
Sbjct: 174 GMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVML 229

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
            G  ++  ++      C +     +  V  +  +I  YC  G +  AR +FD   + +VV
Sbjct: 230 GGLLQEGRIDEA----CRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVV 285

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +W  M +GY + +Q D  RKLF  M  K                                
Sbjct: 286 SWTTMITGYVQNQQVDIARKLFEVMPEK-------------------------------- 313

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
                  N +   A+   Y  CG +  A E+F  +  K V++  A++  +   G+V  AR
Sbjct: 314 -------NEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKAR 366

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
           Q FDQM E+D   W+AMI  Y R     +AL LFR MQ   IRP+  +++S+L+ CA L 
Sbjct: 367 QVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLA 426

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            L+ G  +   + +++   D++V + L+ MY KCG++ KA++VF     KD   W ++I 
Sbjct: 427 NLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIIT 486

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A +G G ++L +F  M  + I+PD+VT+VGVLSAC++TG V +G E F  M  ++ +E
Sbjct: 487 GYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVE 546

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
               HY CMVDLLGRAG LNEA+++I+ MPM+ ++I+WGALLGACR H   ++AE+AAK+
Sbjct: 547 QKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKK 606

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           +L L+P N   ++LL NIYA+  RWD+  ELR+ + DR + K PGCS I +   VH+F  
Sbjct: 607 LLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTG 666

Query: 603 GDKS-HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
           GD S HP+  EI   L+ ++  L+  GY PD S V  DV EE+K +++  HSEKLA+A+G
Sbjct: 667 GDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYG 726

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           L+    G+ IR++KNLR+C DCH   KL++ V  RE+I+RD  RFHHFK GSCSC+DYW
Sbjct: 727 LLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 193/415 (46%), Gaps = 41/415 (9%)

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           +F   + +  +N+LI+ Y   G+++ AR +FD     ++++WN++ +GY + K+  E + 
Sbjct: 91  RFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQN 150

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           +F +M  +  +  +  +   ++     +  +V  R            N++   A+   Y 
Sbjct: 151 MFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPE--------RNVVSWTAMVRGYV 202

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
             G +  A  +F  +  K+V+SWT ++ G +  G++D A + FD MPE+D V  T MI G
Sbjct: 203 KEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGG 262

Query: 323 YLRVNRFREALTLFREMQTSNI---------------------------RPDEFTIVSIL 355
           Y +V R  EA  LF EM   N+                             +E +  ++L
Sbjct: 263 YCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAML 322

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
               N G L+         +   +K+ +   NA+I  + + G+V KA++VF +M  KD+ 
Sbjct: 323 KGYTNCGRLDEA---SELFNAMPIKS-VVACNAMILCFGQNGEVPKARQVFDQMREKDEG 378

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           TW+AMI      G    +L++F  M R  I P+  + + VLS C     +D GRE  A +
Sbjct: 379 TWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL 438

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            ++   + +      ++ +  + G+L +A +V     +K + ++W +++     H
Sbjct: 439 -VRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQH 491



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 173/376 (46%), Gaps = 45/376 (11%)

Query: 49  TVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK 108
           T  N +  +C  + G +  A  +F ++PR +V  W TMI GY         V I   + +
Sbjct: 255 TRTNMIGGYC--QVGRLVEARMLFDEMPRRNVVSWTTMITGY----VQNQQVDIARKLFE 308

Query: 109 SDVRPDNYTFPFLLKGFTRDIAVEFGKEL-HCHVLKFGFDSSVFVQNALISTYCLCGEVD 167
                +  ++  +LKG+T    ++   EL +   +K     SV   NA+I  +   GEV 
Sbjct: 309 VMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIK-----SVVACNAMILCFGQNGEVP 363

Query: 168 MARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
            AR +FD   + D  TW+AM   Y+R     +  +LF  M+R+G+ P   +++ VLS CA
Sbjct: 364 KARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCA 423

Query: 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
            L +LD G+  H  +   +   ++ + + L  MY  CG +  A ++F     KDV+ W +
Sbjct: 424 GLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNS 483

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           I+TGY   G                           L V    EAL +F +M  S I PD
Sbjct: 484 IITGYAQHG---------------------------LGV----EALRVFHDMHFSGIMPD 512

Query: 348 EFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           + T V +L+AC+  G ++ G E   +   K +V+  I     ++D+  + G + +A  + 
Sbjct: 513 DVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572

Query: 407 REM-LRKDKFTWTAMI 421
            +M +  D   W A++
Sbjct: 573 EKMPMEADAIIWGALL 588



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 119/247 (48%), Gaps = 2/247 (0%)

Query: 57  FCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
            C  + G++  A +VF ++       W+ MIK Y R     + + ++  M +  +RP+  
Sbjct: 354 LCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFP 413

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           +   +L        ++ G+E+H  +++  FD  V+V + L+S Y  CG +  A+ +FD  
Sbjct: 414 SLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRF 473

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
              DVV WN++ +GY +     E  ++F +M   G++P  VT V VLSAC+   ++  G 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGL 533

Query: 237 RAHRYVKECKIVPNLILENA-LTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYIN 294
                ++    V   I   A + D+    G++  A+++   +    D I W A++     
Sbjct: 534 EIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRT 593

Query: 295 RGQVDMA 301
             ++D+A
Sbjct: 594 HMKLDLA 600



 Score = 46.2 bits (108), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 85/185 (45%), Gaps = 6/185 (3%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           LIS +  C  +  L   ++IH+Q ++     +  V + L++    + G++  A +VF + 
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYI-KCGNLAKAKQVFDRF 473

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
               V +WN++I GY++       + ++ DM  S + PD+ TF  +L   +    V+ G 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGL 533

Query: 136 ELHCHV-LKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKR 193
           E+   +  K+  +  +     ++      G+++ A  + + +  + D + W A+    + 
Sbjct: 534 EIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRT 593

Query: 194 VKQFD 198
             + D
Sbjct: 594 HMKLD 598


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/688 (35%), Positives = 374/688 (54%), Gaps = 31/688 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQ+H+  I  G      + N LV    S+ G++ +A K+F  +P+ ++  W  MI G S+
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMY-SKCGELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  +  +  M      P  + F   ++      ++E GK++HC  LKFG  S +FV
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            + L   Y  CG +  A  +F+     D V+W AM  GY ++ +F+E    F +M  + V
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV 203

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
                 +   L AC  LK    G+  H  V +     ++ + NALTDMY+  G+M  A  
Sbjct: 204 TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASN 263

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +FG                      +D           R+ V +T +IDGY+   +  + 
Sbjct: 264 VFG----------------------IDSEC--------RNVVSYTCLIDGYVETEQIEKG 293

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L++F E++   I P+EFT  S++ ACAN  ALE G  +   + K     D FV + L+DM
Sbjct: 294 LSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDM 353

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG +E+A + F E+    +  W +++     +G G  ++ +F +M+   + P+ +T+
Sbjct: 354 YGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF 413

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           + +L+ C+H G+V+EG +YF  M   +G+ P E HY C++DLLGRAG L EA E I  MP
Sbjct: 414 ISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMP 473

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            +PN+  W + LGACR+H D EM ++AA+++++L+P N    VLL NIYA   +W++ R 
Sbjct: 474 FEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRS 533

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R  + D  +KK PG S +++    H F A D SHP+   IY KLD +   +K  GY+P 
Sbjct: 534 VRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPR 593

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
              V LD+ +  KE+ +++HSE++A+AF LIS   G  I + KNLR+CVDCH   K +S 
Sbjct: 594 TDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISK 653

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           V  R++IVRD +RFHHF  GSCSC DYW
Sbjct: 654 VTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 200/419 (47%), Gaps = 36/419 (8%)

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           D      +++ + +   +  GK+LH  ++  G+    F+ N L++ Y  CGE+D A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233
           D   + ++V+W AM SG  +  +F E  + F  M   G +PT       + ACA L  ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
           +GK+ H    +  I   L + + L DMY+ CG M  A ++F  +  KD +SWTA++ GY 
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
                                          ++  F EAL  F++M    +  D+  + S
Sbjct: 184 -------------------------------KIGEFEEALLAFKKMIDEEVTIDQHVLCS 212

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR-EMLRK 412
            L AC  L A + G  V + + K   ++DIFVGNAL DMY K GD+E A  VF  +   +
Sbjct: 213 TLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECR 272

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           +  ++T +I G       +K L +F ++ R  I P+E T+  ++ AC +   +++G +  
Sbjct: 273 NVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH 332

Query: 473 AD-MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           A  M I    +P  +    +VD+ G+ G L +A++    +   P  I W +L+     H
Sbjct: 333 AQVMKINFDEDPFVSSI--LVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFGQH 388


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/657 (36%), Positives = 365/657 (55%), Gaps = 33/657 (5%)

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           D++ A  VF K+   ++  W  MI  YS++    + V ++  +L S+  PD +T   LL 
Sbjct: 197 DIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLS 256

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
                     GK+LH  V++ G  S VFV   L+  Y     V+ +R IF+     +V++
Sbjct: 257 ACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMS 316

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           W A+ SGY + +Q  E  KLF  M    V P   T   VL ACA L D  +GK+ H    
Sbjct: 317 WTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTI 376

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           +  +     + N+L +MYA  G M                               + AR+
Sbjct: 377 KLGLSTINCVGNSLINMYARSGTM-------------------------------ECARK 405

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
            F+ + E++ + +    D   +     E+     E++ + +    FT   +L+  A +G 
Sbjct: 406 AFNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGT 463

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           +  GE +   I K+    ++ + NALI MY KCG+ E A +VF +M  ++  TWT++I G
Sbjct: 464 IVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISG 523

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            A +G   K+L++F +ML   + P+EVTY+ VLSAC+H G++DE  ++F  M   H I P
Sbjct: 524 FAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISP 583

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              HY CMVDLLGR+G L EA+E I +MP   +++VW   LG+CRVHR+ ++ E AAK+I
Sbjct: 584 RMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKI 643

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           LE +P + A Y+LL N+YA+  RWD+   LR+ +  + + K  G S IE++  VH+F  G
Sbjct: 644 LEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVG 703

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           D SHPQ ++IY +LDE+   +K +GY+P+   V  DV +E KE+ ++QHSEK+A+A+ LI
Sbjct: 704 DTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALI 763

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+     IR+ KNLR+C DCH   K +S+V  RE++VRD  RFHH K G CSC DYW
Sbjct: 764 STPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 178/389 (45%), Gaps = 43/389 (11%)

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV--SY 177
            LLK   R   +E GK LH  ++  G      + N+LI+ Y  CG+ + A  IF     +
Sbjct: 44  LLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHH 103

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFG-----EMERKGVLPTSVTIVLVLSACAKLKDL 232
           K D+V+W+A+ S +       E+R L       +  R  + P       +L +C+     
Sbjct: 104 KRDLVSWSAIISCFANNSM--ESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFF 161

Query: 233 DVGKRAHRY-VKECKIVPNLILENALTDMYAACG-EMGFALEIFGNIKNKDVISWTAIVT 290
             G     + +K      ++ +  AL DM+   G ++  A  +F  +++K++++WT ++T
Sbjct: 162 TTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMIT 221

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
            Y   G +D                               +A+ LF  +  S   PD+FT
Sbjct: 222 RYSQLGLLD-------------------------------DAVDLFCRLLVSEYTPDKFT 250

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           + S+L+AC  L    LG+ + +++ ++ + +D+FVG  L+DMY K   VE ++++F  ML
Sbjct: 251 LTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTML 310

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
             +  +WTA+I G   +    +++ +F  ML   + P+  T+  VL AC        G++
Sbjct: 311 HHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQ 370

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
                TI+ G+         ++++  R+G
Sbjct: 371 LHGQ-TIKLGLSTINCVGNSLINMYARSG 398



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 161/348 (46%), Gaps = 41/348 (11%)

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           +F+  RK    ++     P  +   L+L AC +  +L++GK  H  + +  +  + +L N
Sbjct: 20  KFESLRKAISRLDLTTTSPL-IKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLN 78

Query: 256 ALTDMYAACGEMGFALEIFGNIKN--KDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
           +L  +Y+ CG+   AL IF N+ +  +D++SW+AI++ + N                   
Sbjct: 79  SLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSM---------------- 122

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSN--IRPDEFTIVSILTACANLGALELGEWVK 371
                           R  LT    +Q S   I P+E+   ++L +C+N      G  + 
Sbjct: 123 --------------ESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIF 168

Query: 372 TYIDKNK-VKNDIFVGNALIDMYCKCG-DVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
            ++ K     + + VG ALIDM+ K G D++ A+ VF +M  K+  TWT MI   +  G 
Sbjct: 169 AFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGL 228

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
            D ++D+F ++L +   PD+ T   +LSAC        G++      I+ G+  ++   G
Sbjct: 229 LDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQ-LHSWVIRSGL-ASDVFVG 286

Query: 490 C-MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
           C +VD+  ++  +  + ++   M +  N + W AL+      R  + A
Sbjct: 287 CTLVDMYAKSAAVENSRKIFNTM-LHHNVMSWTALISGYVQSRQEQEA 333



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 134/272 (49%), Gaps = 12/272 (4%)

Query: 21  SPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S ++ C S+      KQ+H QTIKLGL T   V N L+    +  G M+ A K F  +  
Sbjct: 354 SVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINM-YARSGTMECARKAFNILFE 412

Query: 78  PSVCLWNTMIKGYSR-IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
            ++  +NT     ++ +DS ++      ++  + V    +T+  LL G      +  G++
Sbjct: 413 KNLISYNTAADANAKALDSDES---FNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQ 469

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVK 195
           +H  ++K GF +++ + NALIS Y  CG  + A  +F D+ Y+ +V+TW ++ SG+ +  
Sbjct: 470 IHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYR-NVITWTSIISGFAKHG 528

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD-VGKRAHRYVKECKIVPNLILE 254
              +  +LF EM   GV P  VT + VLSAC+ +  +D   K  +       I P +   
Sbjct: 529 FATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHY 588

Query: 255 NALTDMYAACGEMGFALEIFGNIK-NKDVISW 285
             + D+    G +  A+E   ++  + D + W
Sbjct: 589 ACMVDLLGRSGLLLEAIEFINSMPFDADALVW 620



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 128/285 (44%), Gaps = 26/285 (9%)

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
           L+    R+A++      TS +         +L AC   G LELG+ +   +  + +  D 
Sbjct: 19  LKFESLRKAISRLDLTTTSPLIKSSL----LLKACIRSGNLELGKLLHHKLIDSGLPLDS 74

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREM--LRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
            + N+LI +Y KCGD E A  +FR M   ++D  +W+A+I   A N    ++L  F  ML
Sbjct: 75  VLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHML 134

Query: 442 RAS---IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MVDLLGR 497
           + S   I P+E  +  +L +C++      G   FA + ++ G   +    GC ++D+  +
Sbjct: 135 QCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFL-LKTGYFDSHVCVGCALIDMFTK 193

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR----DAEMAEMAAKQILELDPDNEAV 553
            G   ++  ++ +     N + W  ++   R  +    D  +       + E  PD   +
Sbjct: 194 GGLDIQSARMVFDKMQHKNLVTWTLMI--TRYSQLGLLDDAVDLFCRLLVSEYTPDKFTL 251

Query: 554 YVLLCNIYAACNRWDNF---RELRQMILDRGIKKT--PGCSMIEM 593
             LL    +AC   + F   ++L   ++  G+      GC++++M
Sbjct: 252 TSLL----SACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDM 292


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/756 (33%), Positives = 401/756 (53%), Gaps = 69/756 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQ+H Q IK G + + +V   LV      +  ++   +VF ++   +V  W +++ GY +
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTE-SVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              ++  + ++  M    ++P+ +TF  +L G   D AVE G ++H  V+K G DS++FV
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            N++++ Y     V  A+ +FD     + V+WN+M +G+       E  +LF  M  +GV
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 213 LPTSVTIVLVLSACAKLK-----------------DLDVGKRAHRYVKECKI-------- 247
             T      V+  CA +K                 D D+  +    V   K         
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 248 -------VPNLILENALTDMYAACGEMGFALEIFGNIKNKDV----ISWTAIVTG----- 291
                  V N++   A+   Y   G    A+ +F  ++ + V     +++ I+T      
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVS 410

Query: 292 --------------------------YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
                                     Y   G  + A + F+ + E+D V W+AM+ GY +
Sbjct: 411 PSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQ 470

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACAN-LGALELGEWVKTYIDKNKVKNDIF 384
           +     A+ +F ++    + P+EFT  S+L ACA    ++E G+   +   K+   N + 
Sbjct: 471 MGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALC 530

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           V +AL+ MY K G++E A  VF+  + +D  +W +MI G A +G G KSL +F +M   +
Sbjct: 531 VSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKN 590

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           +  D +T++GV+SACTH G+V+EG+ YF  M   + I P   HY CMVDL  RAG L +A
Sbjct: 591 LELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKA 650

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
           +++I  MP    + +W  LL ACRVH + ++ E+AA++++ L P + A YVLL NIYA  
Sbjct: 651 MDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATA 710

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
             W    ++R+++  + +KK  G S IE+      F+AGD SHPQ+  IYLKL+E++  L
Sbjct: 711 GNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRL 770

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           K  GY PD   V  DV EE KE  + QHSE+LA+AFGLI++ PG  I+IVKNLR+C DCH
Sbjct: 771 KDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCH 830

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + KL+S +  R+++VRD  RFHHFK GSCSC DYW
Sbjct: 831 TVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/559 (23%), Positives = 244/559 (43%), Gaps = 86/559 (15%)

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--G 124
           ++ ++F + P+  +   N ++  +SR D +K  + ++L + +S    D  +   +LK  G
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
              D  V  GK++HC  +K GF   V V  +L+  Y     V+    +FD     +VV+W
Sbjct: 104 CLFDRIV--GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSW 161

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
            ++ +GY++    ++  KLF +M+ +G+ P   T   VL   A    ++ G + H  V +
Sbjct: 162 TSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIK 221

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG-------- 296
             +   + + N++ +MY+    +  A  +F +++N++ +SW +++ G++  G        
Sbjct: 222 SGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFEL 281

Query: 297 ---------------------------QVDMARQYFDQM----PERDYVLWTAMIDGYLR 325
                                      ++  A+Q   Q+     + D  + TA++  Y +
Sbjct: 282 FYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSK 341

Query: 326 VNRFREALTLF--------------------------------REMQTSNIRPDEFTIVS 353
            +   +A  LF                                 +M+   +RP+ FT  +
Sbjct: 342 CSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYST 401

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           ILTA A +   +    +   + K   +N   VG AL D Y K GD  +A ++F  +  KD
Sbjct: 402 ILTANAAVSPSQ----IHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKD 457

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH-TGMVDEGREYF 472
              W+AM+ G A  G  + ++ +F Q+ +  + P+E T+  VL+AC   T  V++G++ F
Sbjct: 458 IVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ-F 516

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP----NSIVWGALLGACR 528
              +I+ G          +V +  + G++  A EV K    +     NS++ G     C 
Sbjct: 517 HSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCG 576

Query: 529 VHRDAEMAEMAAKQILELD 547
                   EM +K  LELD
Sbjct: 577 KKSLKIFEEMRSKN-LELD 594



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 135/282 (47%), Gaps = 3/282 (1%)

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           ++Q FD+ P++       ++  + R ++ +EAL LF  ++ S    D  ++  +L  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           L    +G+ V     K     D+ VG +L+DMY K   VE  +RVF EM  K+  +WT++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           + G   NG  +++L +FSQM    I P+  T+  VL      G V++G +    M I+ G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT-MVIKSG 223

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMA 539
           ++        MV++  ++  +++A  V  +M  + N++ W +++ G      D E  E+ 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
            +  LE     + ++  +  + A        ++L   ++  G
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNG 324



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+  T  + L +      S+ Q KQ HS +IK G      V + LVT   +++G+++ A 
Sbjct: 491 PNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTM-YAKRGNIESAN 549

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF++     +  WN+MI GY++    K  + I+ +M   ++  D  TF  ++   T   
Sbjct: 550 EVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAG 609

Query: 130 AVEFGK 135
            V  G+
Sbjct: 610 LVNEGQ 615


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/704 (34%), Positives = 393/704 (55%), Gaps = 32/704 (4%)

Query: 17   TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
              L+S   +  ++H+  Q+HS  IK G+  +  ++  L+    S+  D++ A K F    
Sbjct: 366  ASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLY-SKCADVETAHKFFLTTE 424

Query: 77   RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
              ++ LWN M+  Y ++D+  +   I+  M    + P+ +T+P +L+  T   A+  G++
Sbjct: 425  TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 137  LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
            +H HV+K GF  +V+V + LI  Y   G++ +A  I     +DDVV+W AM +GY +   
Sbjct: 485  IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544

Query: 197  FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            F E  +LF EME +G+   ++     +SACA ++ L  G++ H          +L + NA
Sbjct: 545  FSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNA 604

Query: 257  LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
            L  +YA CG                               ++  A   F+++ +++ + W
Sbjct: 605  LISLYARCG-------------------------------RIQEAYLAFEKIGDKNNISW 633

Query: 317  TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
             +++ G  +   F EAL +F  M  +    + FT  S ++A A+L  ++ G+ + + + K
Sbjct: 634  NSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLK 693

Query: 377  NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
                ++  V N+LI +Y K G +  A R F +M  ++  +W AMI G + +G G ++L +
Sbjct: 694  TGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRL 753

Query: 437  FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
            F +M    I+P+ VT+VGVLSAC+H G+V EG +YF  M   H + P   HY C+VDLLG
Sbjct: 754  FEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLG 813

Query: 497  RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
            RAG L+ A+E IK MP+  ++++W  LL AC +H++ E+ E AA  +LEL+P++ A YVL
Sbjct: 814  RAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVL 873

Query: 557  LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
            + NIYA   +W +    R+++ DRG+KK PG S IE+   VH F AGDK HP T +IY  
Sbjct: 874  ISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEY 933

Query: 617  LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
            +  +      +GY+ D   +  +  +  K+   + HSEKLA+AFGL+S G  + IR++KN
Sbjct: 934  IGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKN 993

Query: 677  LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            LR+C DCH   K VS + +R +IVRD  RFHHF  G CSCKD+W
Sbjct: 994  LRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/495 (28%), Positives = 244/495 (49%), Gaps = 34/495 (6%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           +KQ+HS+T   G  ++P V N L+    S+ G ++ A KVF  I    +  W  MI G S
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLY-SKNGYIESAKKVFNCICMKDIVTWVAMISGLS 237

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           +    +  +L++ DM  S++ P  Y    +L   T+    E G++LHC V+K+GF S  +
Sbjct: 238 QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETY 297

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V N L++ Y    ++  A  IF      D V++N++ SG  +    D   +LF +M+R  
Sbjct: 298 VCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC 357

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           + P  +T+  +LSACA +  L  G + H +  +  +  ++ILE +L D+Y+ C ++  A 
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           + F   + ++++ W  ++  Y   GQ+D                               +
Sbjct: 418 KFFLTTETENIVLWNVMLVAY---GQLD----------------------------NLSD 446

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           +  +FR+MQ   + P++FT  SIL  C +LGAL LGE + T++ K   + +++V + LID
Sbjct: 447 SFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLID 506

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY K G +  A R+ R +   D  +WTAMI G   +    ++L +F +M    I  D + 
Sbjct: 507 MYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIG 566

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +   +SAC     + +G++  A  +   G   + +    ++ L  R G + EA    + +
Sbjct: 567 FASAISACAGIRALRQGQQIHAQ-SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKI 625

Query: 512 PMKPNSIVWGALLGA 526
             K N+I W +L+  
Sbjct: 626 GDK-NNISWNSLVSG 639



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 236/507 (46%), Gaps = 35/507 (6%)

Query: 25  TCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWN 84
           T  S+ +  ++H +  K G    P + + LV       GD   A KVF +    SV  WN
Sbjct: 70  TSGSLFETMRLHCRISKSGFDGEPLLIDSLVD-NYFRHGDQHGAVKVFDENSNRSVFSWN 128

Query: 85  TMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG-FTRDIAVEFGKELHCHVLK 143
            MI  +    S+     ++  ML   + P+ YTF  +LK     DIA  + K++H     
Sbjct: 129 KMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFY 188

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
           +GFDSS  V N LI  Y   G ++ A+ +F+     D+VTW AM SG  +    +E   L
Sbjct: 189 YGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILL 248

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           F +M    + PT   +  VLSA  K++  ++G++ H  V +        + N L  +Y+ 
Sbjct: 249 FCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSR 308

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
             ++  A  IF  + ++D +S+ ++++G + +G  D                        
Sbjct: 309 SRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSD------------------------ 344

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
                   AL LF +MQ   ++PD  T+ S+L+ACA++GAL  G  + ++  K  +  DI
Sbjct: 345 -------RALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADI 397

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
            +  +L+D+Y KC DVE A + F     ++   W  M+V      +   S ++F QM   
Sbjct: 398 ILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQME 457

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            +IP++ TY  +L  CT  G +  G E      I+ G + N      ++D+  + G L  
Sbjct: 458 GMIPNQFTYPSILRTCTSLGALYLG-EQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLAL 516

Query: 504 ALEVIKNMPMKPNSIVWGALLGACRVH 530
           AL +++ +P + + + W A++     H
Sbjct: 517 ALRILRRLP-EDDVVSWTAMIAGYVQH 542



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 1/194 (0%)

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           + L   M+   +R +    + +L  C   G+L     +   I K+    +  + ++L+D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y + GD   A +VF E   +  F+W  MI          +   +F +ML   I P+  T+
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
            GVL AC    +     +     T  +G + +      ++DL  + G++  A +V   + 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 513 MKPNSIVWGALLGA 526
           MK + + W A++  
Sbjct: 223 MK-DIVTWVAMISG 235


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/689 (35%), Positives = 379/689 (55%), Gaps = 33/689 (4%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            KQIH   ++ GL    +V N L+     + G +  A  VF ++    +  WNTMI G + 
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYV-KAGSVSRARSVFGQMNEVDLISWNTMISGCTL 1013

Query: 93   IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVF 151
                +  V +++ +L+  + PD +T   +L+  +  +       ++H   +K G     F
Sbjct: 1014 SGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSF 1073

Query: 152  VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
            V  ALI  Y   G+++ A  +F      D+ +WNA+  GY     F +  +L+  M+  G
Sbjct: 1074 VSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESG 1133

Query: 212  VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
                 +T+V    A   L  L  GK+ H  V +     +L + + + DMY  CGEM    
Sbjct: 1134 ERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEM---- 1189

Query: 272  EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
                                       + AR+ F ++P  D V WT MI G +   +   
Sbjct: 1190 ---------------------------ESARRVFSEIPSPDDVAWTTMISGCVENGQEEH 1222

Query: 332  ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
            AL  + +M+ S ++PDE+T  +++ AC+ L ALE G  +   I K     D FV  +L+D
Sbjct: 1223 ALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVD 1282

Query: 392  MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
            MY KCG++E A+ +F+    +   +W AMIVGLA +G+  ++L  F  M    ++PD VT
Sbjct: 1283 MYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVT 1342

Query: 452  YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
            ++GVLSAC+H+G+V E  E F  M   +GIEP   HY C+VD L RAG + EA +VI +M
Sbjct: 1343 FIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSM 1402

Query: 512  PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
            P + ++ ++  LL ACRV  D E  +  A+++L L+P + A YVLL N+YAA N+W+N  
Sbjct: 1403 PFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVA 1462

Query: 572  ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
              R M+    +KK PG S +++   VH FVAGD+SH +T  IY K++ +   ++  GY+P
Sbjct: 1463 SARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVP 1522

Query: 632  DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
            D     +DV EEDKE ++Y HSEKLA+A+GL+ + P  T+R++KNLR+C DCH   K +S
Sbjct: 1523 DTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYIS 1582

Query: 692  MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             V+ RE+++RD  RFHHF++G CSC DYW
Sbjct: 1583 KVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 179/424 (42%), Gaps = 54/424 (12%)

Query: 131  VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS--YKDDVVTWNAMF 188
            +  GK  H  +L  G     FV N LI+ Y  CG +  AR +FD +     D+VTWNA+ 
Sbjct: 672  LSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAIL 731

Query: 189  SGYK-RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            S       +  +   LF  + R  V  T  T+  V   C         +  H Y  +  +
Sbjct: 732  SALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGL 791

Query: 248  VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
              ++ +  AL ++YA  G +  A  +F  +  +DV+ W  ++  Y++      A   F +
Sbjct: 792  QWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSE 851

Query: 308  M------PE-------------------------------------RDYVLWTAMIDGYL 324
                   P+                                      D ++W   +  +L
Sbjct: 852  FHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFL 911

Query: 325  RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
            +     EA+  F +M  S +  D  T V +LT  A L  LELG+ +   + ++ +   + 
Sbjct: 912  QRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVS 971

Query: 385  VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
            VGN LI+MY K G V +A+ VF +M   D  +W  MI G  ++G  + S+ MF  +LR S
Sbjct: 972  VGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDS 1031

Query: 445  IIPDEVTYVGVLSACTHTGMVDEGREYFADM----TIQHGIEPNEAHYGCMVDLLGRAGH 500
            ++PD+ T   VL AC+      EG  Y A       ++ G+  +      ++D+  + G 
Sbjct: 1032 LLPDQFTVASVLRACSSL----EGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGK 1087

Query: 501  LNEA 504
            + EA
Sbjct: 1088 MEEA 1091



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 32/232 (13%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI--KN 279
           +L       DL +GKRAH  +      P+  + N L  MYA CG +  A ++F      N
Sbjct: 662 ILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTN 721

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           +D+++W AI++                                    ++  +   LFR +
Sbjct: 722 RDLVTWNAILSALA------------------------------AHADKSHDGFHLFRLL 751

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
           + S +     T+  +   C    +    E +  Y  K  ++ D+FV  AL+++Y K G +
Sbjct: 752 RRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLI 811

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
            +A+ +F  M  +D   W  M+          +++ +FS+  R    PD+VT
Sbjct: 812 REARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVT 863



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 12/186 (6%)

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           P  F+I+    A ++L    LG+     I  +    D FV N LI MY KCG +  A+++
Sbjct: 657 PQCFSILRQAIAASDL---SLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKL 713

Query: 406 FREM--LRKDKFTWTAMIVGLAINGHGDKSLDMFS--QMLRASIIP-DEVTYVGVLSACT 460
           F       +D  TW A++  LA   H DKS D F   ++LR S++     T   V   C 
Sbjct: 714 FDTTPDTNRDLVTWNAILSALA--AHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCL 771

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
            +       E      ++ G++ +    G +V++  + G + EA  +   M ++ + ++W
Sbjct: 772 LSAS-PSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVR-DVVLW 829

Query: 521 GALLGA 526
             ++ A
Sbjct: 830 NVMMKA 835



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 8/163 (4%)

Query: 11   STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
            +TL +   L++ +E      Q +QIH+  +KL    +P V   LV    ++ G+++ A  
Sbjct: 1243 ATLVKACSLLTALE------QGRQIHANIVKLNCAFDPFVMTSLVDM-YAKCGNIEDARG 1295

Query: 71   VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD-I 129
            +F++     +  WN MI G ++  + K  +  +  M    V PD  TF  +L   +   +
Sbjct: 1296 LFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGL 1355

Query: 130  AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
              E  +  +     +G +  +   + L+      G ++ A  +
Sbjct: 1356 VSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKV 1398


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 250/729 (34%), Positives = 406/729 (55%), Gaps = 48/729 (6%)

Query: 7   ISPPS-TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM 65
           + P S TL       S     E +   KQ+H+  ++ G L N  + N LV     + G +
Sbjct: 191 VEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGEL-NSFIINTLVAMY-GKMGKL 248

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             +  +        +  WNT++    + +     +    +M+   V PD +T   +L   
Sbjct: 249 ASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPAC 308

Query: 126 TRDIAVEFGKELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
           +    +  GKELH + LK G  D + FV +AL+  YC C +V     +FD  +   +  W
Sbjct: 309 SHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLW 368

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           NAM +GY + +  +E   LF EME   G+L  S T+  V+ AC +       +  H +V 
Sbjct: 369 NAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVV 428

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           +  +  +  ++NAL DMY+                                 G++D+A++
Sbjct: 429 KRGLDRDRFVQNALMDMYS-------------------------------RLGKIDIAKR 457

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT-----------SNIRPDEFTIV 352
            F +M +RD V W  +I GY+   R  +AL +  +MQ             +++P+  T++
Sbjct: 458 IFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLM 517

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           +IL +CA L AL  G+ +  Y  KN +  D+ VG+AL+DMY KCG ++ +++VF ++  +
Sbjct: 518 TILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR 577

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           +  TW  +++   ++G+   ++DM   M+   + P+EVT++ V +AC+H+GMV+EG + F
Sbjct: 578 NVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIF 637

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLGACRVHR 531
            +M   +G+EP+  HY C+VDLLGRAG + EA ++I  +P   +    W +LLGACR+H 
Sbjct: 638 YNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHN 697

Query: 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMI 591
           + E+ E+AA+ +++L+P+  + YVLL NIY++   W    E+R+ +  +G++K PGCS I
Sbjct: 698 NLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWI 757

Query: 592 EMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQ 651
           E    VH+FVAGD SHPQ++++   L+ +   ++  GY+PD S V  +V E++KE  +  
Sbjct: 758 EHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCG 817

Query: 652 HSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH 711
           HSEKLA+AFG++++ PG  IR+ KNLR+C DCH   K +S V DRE+I+RD  RFHHFK+
Sbjct: 818 HSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKN 877

Query: 712 GSCSCKDYW 720
           G+CSC DYW
Sbjct: 878 GTCSCGDYW 886



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 153/565 (27%), Positives = 261/565 (46%), Gaps = 56/565 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           L+  +   + M   KQIH+   K G  + + TV N LV     + GD     KVF +I  
Sbjct: 99  LLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLY-RKCGDFGAVYKVFDRISE 157

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF---PFLLKGFTRDIAVEFG 134
            +   WN++I      +  +  +  +  ML  DV P ++T          F     +  G
Sbjct: 158 RNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMG 217

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K++H + L+ G + + F+ N L++ Y   G++  ++ +       D+VTWN + S   + 
Sbjct: 218 KQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQN 276

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECKIVPNLIL 253
           +QF E  +   EM  +GV P   TI  VL AC+ L+ L  GK  H Y +K   +  N  +
Sbjct: 277 EQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 336

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            +AL DMY  C               K V+S   +                FD M +R  
Sbjct: 337 GSALVDMYCNC---------------KQVLSGCRV----------------FDGMFDRKI 365

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKT 372
            LW AMI GY +     EAL LF EM+ S  +  +  T+  ++ AC   GA    E +  
Sbjct: 366 GLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHG 425

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           ++ K  +  D FV NAL+DMY + G ++ A+R+F +M  +D  TW  +I G   +   + 
Sbjct: 426 FVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHED 485

Query: 433 SLDMFSQML-----------RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
           +L M  +M            R S+ P+ +T + +L +C     + +G+E  A   I++ +
Sbjct: 486 ALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHA-YAIKNNL 544

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAA 540
             + A    +VD+  + G L  + +V   +P++ N I W  ++ A  +H +++ A +M  
Sbjct: 545 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGNSQDAIDMLR 603

Query: 541 KQILELDPDNEAVYVLLCNIYAACN 565
             +++    NE  ++   +++AAC+
Sbjct: 604 MMMVQGVKPNEVTFI---SVFAACS 625



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 136/486 (27%), Positives = 232/486 (47%), Gaps = 48/486 (9%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           W  +++   R +  +  VL Y+DM+   ++PDN+ FP LLK       ++ GK++H HV 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 143 KFGFD-SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           KFG+   SV V N L++ Y  CG+      +FD   + + V+WN++ S     ++++   
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKL---KDLDVGKRAHRY-VKECKIVPNLILENAL 257
           + F  M  + V P+S T+V V  AC+     + L +GK+ H Y +++ ++  N  + N L
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGEL--NSFIINTL 238

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
             MY   G++  +  + G+ + +D+++W  +++      Q                    
Sbjct: 239 VAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQ-------------------- 278

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                      F EAL   REM    + PD FTI S+L AC++L  L  G+ +  Y  KN
Sbjct: 279 -----------FLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKN 327

Query: 378 -KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
             +  + FVG+AL+DMYC C  V    RVF  M  +    W AMI G A N + +++L +
Sbjct: 328 GSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLL 387

Query: 437 FSQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           F +M   A ++ +  T  GV+ AC  +G   + +E      ++ G++ +      ++D+ 
Sbjct: 388 FIEMEESAGLLANSTTMAGVVPACVRSGAFSK-KEAIHGFVVKRGLDRDRFVQNALMDMY 446

Query: 496 GRAGHLNEALEVIKNMPMKP----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
            R G ++ A  +   M  +     N+I+ G +      H DA +  +   QILE      
Sbjct: 447 SRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFS--ERHEDA-LLMLHKMQILERKASER 503

Query: 552 AVYVLL 557
           A  V L
Sbjct: 504 ASRVSL 509



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 129/267 (48%), Gaps = 13/267 (4%)

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           W  ++   +R N  REA+  + +M    I+PD F   ++L A A+L  ++LG+ +  ++ 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 376 KNKVKND-IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           K     D + V N L+++Y KCGD     +VF  +  +++ +W ++I  L      + +L
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE---GREYFADMTIQHGIEPNEAHYGCM 491
           + F  ML   + P   T V V  AC++  M +    G++  A   ++ G E N      +
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHA-YGLRKG-ELNSFIINTL 238

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA-CRVHRDAEMAEMAAKQILE-LDPD 549
           V + G+ G L  +  ++ +   + + + W  +L + C+  +  E  E   + +LE ++PD
Sbjct: 239 VAMYGKMGKLASSKVLLGSFEGR-DLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPD 297

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQM 576
                  + ++  AC+  +  R  +++
Sbjct: 298 G----FTISSVLPACSHLEMLRTGKEL 320


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/589 (38%), Positives = 355/589 (60%), Gaps = 34/589 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLC--GEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K+ H  +LK G     F  + L++T  L   G +D A  IF    +     +N M  G+ 
Sbjct: 48  KQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHV 107

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +    +E    + EM  +GV P + T   +L ACA+L  ++ G + H ++ +  +  ++ 
Sbjct: 108 KDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVF 167

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           ++N+L  MY  CGE+G    +F                               +QM ER 
Sbjct: 168 VQNSLISMYGKCGEIGVCCAVF-------------------------------EQMNERS 196

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNI-RPDEFTIVSILTACANLGALELGEWVK 371
              W+A+I  +  +  + + L L  +M      R +E  +VS+L+AC +LGAL+LG  V 
Sbjct: 197 VASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVH 256

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            ++ +N    ++ V  +LI+MY KCG + K   +F++M +K+K +++ MI GLA++G+G 
Sbjct: 257 GFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGR 316

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           + L +F++ML   + PD++ YVGVL+AC+H G+V EG + F  M ++HGIEP   HYGCM
Sbjct: 317 EGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCM 376

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDL+GRAG ++EALE+IK+MPM+PN ++W +LL A +VH + +  E+AAKQ+ +LD    
Sbjct: 377 VDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKA 436

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
           + YV+L N+YA   RW++  + R  +  +G+ + PG S++E+   +H FV+ D  HPQ++
Sbjct: 437 SDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSE 496

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            +Y  L +M   LKF GY PD ++V  DV EE+K++ +  HS+KLA+A+ LI +  G  I
Sbjct: 497 SVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPI 556

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RIV+NLRMC DCH   KL+S+++DRE+ VRD+ RFHHFK G+CSC+DYW
Sbjct: 557 RIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 212/410 (51%), Gaps = 35/410 (8%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRK 74
           E   +S ++ C +M + KQ H++ +KLGL  +    + LV  C  S+ G M YAC +FR+
Sbjct: 31  EKECVSLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQ 90

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           +       +NTM++G+ +  + +  ++ Y +M +  V+PDN+T+P LLK   R  AVE G
Sbjct: 91  MDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEG 150

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
            ++H H+LK G ++ VFVQN+LIS Y  CGE+ +   +F+   +  V +W+A+ + +  +
Sbjct: 151 MQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASL 210

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
             + +  +L G+M  +G      +I++ VLSAC  L  LD+G+  H ++       N+I+
Sbjct: 211 GMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIV 270

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
           E +L +MY  CG +   + +F  +  K+ +S++ +++G                      
Sbjct: 271 ETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLA-------------------- 310

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKT 372
                 + GY      RE L +F EM    + PD+   V +L AC++ G ++ G +    
Sbjct: 311 ------MHGY-----GREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNR 359

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
              ++ ++  I     ++D+  + G +++A  + + M +  +   W +++
Sbjct: 360 MKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLL 409


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/564 (38%), Positives = 345/564 (61%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
           M  +K++H+  I  GL       +K++      + D+ +A KVF +I  P+  LWN +I+
Sbjct: 1   MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIR 60

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
           G ++ D+  + +  Y       + PDN TFPF+LK   R  A+  G+++H H+ K G  S
Sbjct: 61  GLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 120

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
            +FV N+LI  Y  CG +  AR +FD     DVV+WN++  GY +  +F +   LF  M+
Sbjct: 121 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 180

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
            +GV    VT++ V+SAC +L D  +     RY+++  I  ++ L N L D +   G++ 
Sbjct: 181 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 240

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A ++F N+K +++++  A++  Y     +  AR+ FDQ+P++D + W++MI GY + N 
Sbjct: 241 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 300

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           F +AL +FR+MQ + ++PD   I S++++CA+LGAL+LG+WV  Y+ +N +K D  + N+
Sbjct: 301 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENS 360

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LIDMY KCG  ++A +VF+EM  KD  +W ++I+GLA NG   +SL++F  ML     P+
Sbjct: 361 LIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPN 420

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
            VT++GVL AC +  +V+EG ++F  M   + +EP   HYGC+VDLLGRAG L +AL  I
Sbjct: 421 GVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFI 480

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
             MP+ P+ +VW  LLG+C  H D  +AE+  K++ EL+P N   Y LL N YA+ +RW 
Sbjct: 481 TEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWS 540

Query: 569 NFRELRQMILDRGIKKTPGCSMIE 592
               +RQ + D  ++K+PGCS +E
Sbjct: 541 EAMNVRQCMADTDVRKSPGCSAVE 564



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 219/465 (47%), Gaps = 82/465 (17%)

Query: 10  PSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           P  LT   P I  ++ C  ++ L   +Q+H+   KLGLL++  V N L+    +  G++ 
Sbjct: 85  PDNLT--FPFI--LKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAA-CGNLC 139

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           YA  VF ++    V  WN++I GYS+ +  K+ + ++  M    V+ D  T   ++   T
Sbjct: 140 YARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACT 199

Query: 127 R---------------DIAVE------------FGKELHCHVLKFGFDS----SVFVQNA 155
           R               D  +E            FG+       +  F +    ++   NA
Sbjct: 200 RLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNA 259

Query: 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
           +I+ Y    ++  AR IFD   K D+++W++M SGY +   F +  ++F +M+R  V P 
Sbjct: 260 MIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPD 319

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           ++ I  V+S+CA L  LD+GK  H YV+   I  + I+EN+L DMY  CG    AL++F 
Sbjct: 320 AIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFK 379

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
            +K KD +SW +I+ G  N G        F+                       +E+L L
Sbjct: 380 EMKEKDTLSWNSIIIGLANNG--------FE-----------------------KESLNL 408

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELG-----EWVKTYIDKNKVKNDIFVGNALI 390
           F+ M T   RP+  T + +L ACAN   +E G        + Y  + ++K+       ++
Sbjct: 409 FQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKH----YGCVV 464

Query: 391 DMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSL 434
           D+  + G +EKA R   EM +  D   W  +++G + N HGD ++
Sbjct: 465 DLLGRAGQLEKALRFITEMPIDPDPVVWR-ILLG-SCNTHGDVAI 507


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/624 (37%), Positives = 375/624 (60%), Gaps = 38/624 (6%)

Query: 13  LTQETP--LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           +T +TP  +++ IETC ++ QLKQIH+++I   L     +  K++    S    + YA +
Sbjct: 1   MTIQTPKSVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSH-ACLDYATQ 59

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDI 129
           VF +   P   ++N MI+ YS   +    + IY  M    ++  D YT+PF+ K      
Sbjct: 60  VFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQF 119

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           AVE GKE+H  +++ G++   F+Q++L++ Y +CGE+  A+ +FD     DVV WNA+ +
Sbjct: 120 AVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALIT 179

Query: 190 GYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKI 247
           GY R     ++  +F EM E K V P   T++ ++ AC + K+L +G+  H Y+ K+  +
Sbjct: 180 GYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVL 239

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
              + LE AL ++Y  CG +                               D AR+ FD+
Sbjct: 240 REGVKLEAALINLYVKCGYL-------------------------------DGARKLFDE 268

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           +PE++ V+W ++I GY ++    E + L REM  SN++PD FT+  +L+ACA +GA  LG
Sbjct: 269 IPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLG 328

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
            WV  + +K  +  D+F+G ALIDMY KCG +  A++VF +M  ++  TW A++ G A +
Sbjct: 329 NWVHRFAEKKGIW-DVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASH 387

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G  + ++++FS+M  +   PD +T++ VL AC H+G+V+ G++YF  M   + I P   H
Sbjct: 388 GQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEH 447

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           YGCMVDLLGRAG L EA E+IK M ++PN +VWGALL AC +H + E+ E AA  +++L+
Sbjct: 448 YGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLN 507

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
             +   YV+L N+YA+  R++  + +R+M++++GI K+ GCSMIE+  VVHEFV  DK H
Sbjct: 508 AMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDVVHEFVVADKMH 567

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMP 631
           P+++EIY  LDE++  LK  GY+P
Sbjct: 568 PRSEEIYSVLDELSKKLKMAGYVP 591


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/592 (40%), Positives = 349/592 (58%), Gaps = 45/592 (7%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCG-----EVDMARGIFDVSYKDDVVTWNAMFS 189
           K+ H  +L+ G     ++  +L+ +Y           + +  +FD   K +V  WN M  
Sbjct: 72  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 131

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
                 +  +   L+ EM      P   T   VL AC+    +  G + H ++ +  +  
Sbjct: 132 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 191

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           +  + ++   MYA+ G +  A  I  +                   G+VD        MP
Sbjct: 192 DGHILSSAIRMYASFGRLVEARRILDD-----------------KGGEVDAV-----CMP 229

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           +R                 F EAL +F +MQ   IRP +F + S+L+ACANLGAL+ G W
Sbjct: 230 DRKGC--------------FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRW 275

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           + TY  +N ++ D  +G +L+DMY KCG ++ A  VF +M  K+  +W AMI GLA++G 
Sbjct: 276 IHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGR 335

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
            + ++D+FS+M    I P+E+T+VGVL+AC H G+V +G   F  M  ++G+EP   HYG
Sbjct: 336 AEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYG 392

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           C+VDLLGRAG L EA +V+ ++P +P   VWGALLGACR H + E+ E   K +LEL+P 
Sbjct: 393 CIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQ 452

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN-GVVHEFVAGDKSHP 608
           N   Y LL NIYA   RW+   E+R+++ +RGIK TPG S+I++  G VH+F+ GD SHP
Sbjct: 453 NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHP 512

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPG 668
           Q K+IY  LD++   L+  GY PD S+V  D+ EE+KE AV+QHSEKLA+ FGLI++ PG
Sbjct: 513 QVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPG 572

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            TIRIVKNLR+C DCH   KL+S VY+RE+IVRD+ R+HHF++G+CSCKD+W
Sbjct: 573 TTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 211/494 (42%), Gaps = 90/494 (18%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLV----TFCCSEKGDMKYACKVFRKIPRPSVCLW 83
           S+H LKQ H+  ++ G L +  +   LV        +     + + +VF  + +P+V LW
Sbjct: 67  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 126

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           N MIK     +     +L+Y +M+ +  RP+ YT+P +LK  +    V  G ++H H++K
Sbjct: 127 NCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVK 186

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD-DVVTWNAMFSGYKRVKQFDETRK 202
            G      + ++ I  Y   G +  AR I D    + D V          R   F E  +
Sbjct: 187 HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMP------DRKGCFMEALE 240

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           +F +M+++ + P    +  VLSACA L  LD G+  H Y K   I  + +L  +L DMYA
Sbjct: 241 IFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYA 300

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG +  A E+F  + NK+V SW A++ G    G                          
Sbjct: 301 KCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHG-------------------------- 334

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKN 381
                R  +A+ LF +M   +I P+E T V +L ACA+ G ++ G  +   + K   V+ 
Sbjct: 335 -----RAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEP 386

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
            I     ++D+  + G + +A++V                                    
Sbjct: 387 QIEHYGCIVDLLGRAGLLTEAEKV------------------------------------ 410

Query: 442 RASIIPDEVT---YVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGR 497
             S IP E T   +  +L AC   G V+ G E    + ++  +EP N   Y  + ++  +
Sbjct: 411 -VSSIPTEPTPAVWGALLGACRKHGNVELG-ERVGKILLE--LEPQNSGRYTLLSNIYAK 466

Query: 498 AGHLNEALEVIKNM 511
           AG   E  EV K M
Sbjct: 467 AGRWEEVGEVRKLM 480


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/704 (33%), Positives = 395/704 (56%), Gaps = 15/704 (2%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           +S ++   ++  L+ +    +K G   +  +   ++     +   +  A K F  +   +
Sbjct: 231 LSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERN 290

Query: 80  VCLWNTMIKGYS---RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
              W+TMI   S   RID+    + +Y    + D          L+ G  +   ++  + 
Sbjct: 291 EYTWSTMIAALSHGGRIDA---AIAVY----ERDPVKSIACRTALITGLAQCGRIDDARI 343

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           L   +     +  V   NALI+ Y   G V+ A+ +FD     + ++W  M +GY +  +
Sbjct: 344 LFEQIP----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGR 399

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            +E   L  E+ R G+LP+  ++  +  AC+ +  L+ G + H    +     N    NA
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNA 459

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L  MY  C  M +A ++F  +  KD++SW + +   +    +D AR  FD M  RD V W
Sbjct: 460 LITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSW 519

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           T +I  Y    +  EA+  F+ M   +  P+   +  +L  C +LGA ++G+ + T   K
Sbjct: 520 TTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIK 579

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
             + +++ V NALI MY KCG  + ++R+F  M  +D FTW  +I G A +G G +++ M
Sbjct: 580 LGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKM 638

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           +  M  A ++P+EVT+VG+L+AC+H G+VDEG ++F  M+  +G+ P   HY CMVDLLG
Sbjct: 639 YQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLG 698

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R G +  A + I +MP++P++++W ALLGAC++H++AE+ + AA+++  ++P N   YV+
Sbjct: 699 RTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVM 758

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L NIY++   W    E+R+++  +G+ K PGCS  ++   +H FV GDK H Q +EI   
Sbjct: 759 LSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVAT 818

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L+E+ + LK  GY+PD   V  D+ EE KE ++  HSEKLA+A+ L+++  G+ I+I+KN
Sbjct: 819 LEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKN 878

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C DCH   K VS V  R++ +RD  RFHHF++GSCSC+D+W
Sbjct: 879 LRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 132/494 (26%), Positives = 205/494 (41%), Gaps = 79/494 (15%)

Query: 43  GLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT----------------- 85
           G+L   TV    +  C  + GD+  A ++F  +P   V  WN+                 
Sbjct: 121 GMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNL 180

Query: 86  --------------MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
                         MI GY RI++H     I+  M +  + PD   F   L        +
Sbjct: 181 FEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNL 240

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV-DMARGIFDVSYKDDVVTWNAMFSG 190
           +  + L    LK GF+  V +  A+++ Y     V D A   F+   + +  TW+ M + 
Sbjct: 241 DVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAA 300

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
                + D                                       A   V E   V +
Sbjct: 301 LSHGGRID---------------------------------------AAIAVYERDPVKS 321

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           +    AL    A CG +  A  +F  I    V+SW A++TGY+  G V+ A++ FD+MP 
Sbjct: 322 IACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPF 381

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           R+ + W  MI GY +  R  EAL L +E+  S + P   ++ SI  AC+N+ ALE G  V
Sbjct: 382 RNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
            +   K   + + F  NALI MY KC ++E A++VF  M+ KD  +W + +  L  N   
Sbjct: 442 HSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLL 501

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           D++ + F  ML      D+V++  ++SA  H    +E    F  M  +H + PN      
Sbjct: 502 DEARNTFDNMLS----RDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSP---I 553

Query: 491 MVDLLGRAGHLNEA 504
           +  LLG  G L  +
Sbjct: 554 LTILLGVCGSLGAS 567



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 178/364 (48%), Gaps = 19/364 (5%)

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G V  AR +FD   + D++ WN+M S Y      D  R L+  +   G + T     ++L
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS-GGNMRTGA---ILL 103

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           S   +L  +   +R    V +  +  N +  NA+   Y   G++  A  +F  + ++DV 
Sbjct: 104 SGYGRLGRVLEARR----VFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVS 159

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           SW +++TGY +  Q+  AR  F++MPER+ V WT MI GY R+    +A  +F +M    
Sbjct: 160 SWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV-EKA 402
           + PD+    S L+A   LG L++ E ++    K   + D+ +G A++++Y +   V + A
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
            + F  M+ ++++TW+ MI  L+  G  D ++ ++ +    SI         +++     
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI----ACRTALITGLAQC 335

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G +D+ R  F  +      EP    +  ++    + G +NEA E+   MP + N+I W  
Sbjct: 336 GRIDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAG 389

Query: 523 LLGA 526
           ++  
Sbjct: 390 MIAG 393



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
           + G V +A+ VF  M R+D   W +MI     NG  D + D++  +   ++    +    
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI---- 101

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           +LS     G V E R  F  M     +E N   +  M+    + G +  A  +   MP +
Sbjct: 102 LLSGYGRLGRVLEARRVFDGM-----LERNTVAWNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
             S     L G C       +  + A+ + E  P+   V
Sbjct: 157 DVSSWNSMLTGYCH-----SLQMVDARNLFEKMPERNLV 190


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/634 (37%), Positives = 362/634 (57%), Gaps = 35/634 (5%)

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALI--STYCLCGEVDMARGIFDVSYKD 179
           L  F++  ++   K++   + K   +S   V   L+      L   +  AR +F      
Sbjct: 9   LALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNP 68

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV-LPTSVTIVLVLSACAKLKDLDVGKRA 238
           DV  +N +  G           +LF EM RK V LP S +   +L A A  + L  G + 
Sbjct: 69  DVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQL 128

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT-------- 290
           H       +  +L +   L  MYA C  + FA ++F  +   ++++W AIV         
Sbjct: 129 HCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGV 188

Query: 291 -----------------------GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
                                  GY   G++ +AR+ F +MP +D V W+ MI G+    
Sbjct: 189 KDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNG 248

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
            F +A   FRE++   +RP+E ++  +L+ACA  GA E G  +  +++K+     I V N
Sbjct: 249 NFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNN 308

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           ALID Y KCG+++ A+ VF  MLR+   +WTAMI G+A++G+G++++ +F++M  ++I P
Sbjct: 309 ALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKP 368

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D +T++ +L AC+H G+VD G  YF+ M   +GIEP   HYGCMVDL GRAG L +A + 
Sbjct: 369 DSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDF 428

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           +  MP+ PN IVW  LLGAC +H +  +A    +Q+ ELDP+N   +VLL NIYA   +W
Sbjct: 429 VCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKW 488

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
            +   LR+ +  + +KKTPG SMIE+N +++ FVAG+K +    E + KL E+ S L+  
Sbjct: 489 KDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIE 548

Query: 628 -GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            GY+P++  V  D+  E+KE +V QHSEKLA+AFG+     G  IR+VKNLR+C DCH +
Sbjct: 549 GGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTV 608

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            KL+S VY+ E++VRD++RFH F HGSCSC+DYW
Sbjct: 609 MKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/482 (25%), Positives = 218/482 (45%), Gaps = 97/482 (20%)

Query: 14  TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD-MKYACKVF 72
           ++E   ++    C+S+  +KQI +   K  L + P V  KL+  C     D + YA ++F
Sbjct: 3   SRELHCLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLF 62

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR-PDNYTFPFLLKGFTRDIAV 131
             I  P V ++NT+I+G S  D+  N + ++++M +  V  PD+++F FLLK      A+
Sbjct: 63  LDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRAL 122

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA----- 186
             G +LHC  + +G DS +FV   LIS Y  C  +  AR +FD   + ++V WNA     
Sbjct: 123 TNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAAC 182

Query: 187 --------------------------MFSGYKRVKQ------------------------ 196
                                     M +GY +  +                        
Sbjct: 183 FRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIV 242

Query: 197 -------FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
                  F++    F E+ R+G+ P  V++  VLSACA+    + G+  H +V++   + 
Sbjct: 243 GFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQ 302

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
            + + NAL D Y+ CG +  A  +F N+  +  +SWTA++ G        MA   + +  
Sbjct: 303 IISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAG--------MAMHGYGE-- 352

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-E 368
                                EA+ LF EM+ SNI+PD  T +SIL AC++ G ++LG  
Sbjct: 353 ---------------------EAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCS 391

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
           +    ++   ++  I     ++D+Y + G +++A     +M +  +   W  ++   +I+
Sbjct: 392 YFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIH 451

Query: 428 GH 429
           G+
Sbjct: 452 GN 453



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 125/256 (48%), Gaps = 4/256 (1%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           ++ G+++ A +VF K+P      W+TMI G++   +  +    + ++ +  +RP+  +  
Sbjct: 214 TKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLT 273

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L    +  A EFG+ LH  V K GF   + V NALI TY  CG +DMAR +FD   + 
Sbjct: 274 GVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRR 333

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG-KRA 238
             V+W AM +G       +E  +LF EME   + P S+T + +L AC+    +D+G    
Sbjct: 334 SAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYF 393

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVTGYINRG 296
            R V    I P +     + D+Y   G++  A +      I   D++ W  ++      G
Sbjct: 394 SRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIV-WRTLLGACSIHG 452

Query: 297 QVDMARQYFDQMPERD 312
            + +A Q   Q+ E D
Sbjct: 453 NLYLAGQVKRQLSELD 468


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/559 (41%), Positives = 345/559 (61%), Gaps = 3/559 (0%)

Query: 37   SQTIKLGLLTNP-TVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDS 95
            S  IK  L T+P ++ N L ++  S    +K A ++FR+IPRP++  WN MI+G+S+ + 
Sbjct: 718  SNMIKELLPTDPISIFNLLKSYALSPTNILK-ANELFRQIPRPTLSHWNIMIRGWSQTNQ 776

Query: 96   HKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA 155
                +  Y  M    +  +N T+PFLLK   R I+      +H  VLK GFDS +FV NA
Sbjct: 777  PIEAIRNYNLMYSQALFGNNLTYPFLLKACAR-ISNVSCTTVHARVLKLGFDSDLFVSNA 835

Query: 156  LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
            LI  Y    E+  AR +FD   + D+V+WN++  GY R +++ E   +F EM    V   
Sbjct: 836  LIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGD 895

Query: 216  SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
            +VT+V V+ AC  L +  V      Y++E K+  ++ L N L DMY     +  A  +F 
Sbjct: 896  AVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFD 955

Query: 276  NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
             +++++++SW A++ GY   G +  AR+ FD MP RD + WT+MI  Y +  +F +A+ L
Sbjct: 956  RMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRL 1015

Query: 336  FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
            F+EM  + ++PDE T+ S+L+ACA++GAL++GE V  YI K  V  DI+VGNALIDMYCK
Sbjct: 1016 FQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCK 1075

Query: 396  CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
            CG VEK   VF EM ++D  +WT++I GLA+NG  D +L++FS MLR  + P   T+VGV
Sbjct: 1076 CGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGV 1135

Query: 456  LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
            L AC H G+VD+G EYF  M   +G+ P   HYGC+VDLL R+G+L  A E IK MPM P
Sbjct: 1136 LLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDP 1195

Query: 516  NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
            + +VW  LL A +VH +  +AE+A K++LE DP N   Y+L  N YA  NRW++  ++R+
Sbjct: 1196 DVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRR 1255

Query: 576  MILDRGIKKTPGCSMIEMN 594
            ++ +  + K    S +E+N
Sbjct: 1256 LMEESNVHKPSASSSVEIN 1274


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/704 (33%), Positives = 395/704 (56%), Gaps = 15/704 (2%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           +S ++   ++  L+ +    +K G   +  +   ++     +   +  A K F  +   +
Sbjct: 231 LSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERN 290

Query: 80  VCLWNTMIKGYS---RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
              W+TMI   S   RID+    + +Y    + D          L+ G  +   ++  + 
Sbjct: 291 EYTWSTMIAALSHGGRIDA---AIAVY----ERDPVKSIACRTALITGLAQCGRIDDARI 343

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           L   +     +  V   NALI+ Y   G V+ A+ +FD     + ++W  M +GY +  +
Sbjct: 344 LFEQIP----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGR 399

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            +E   L  E+ R G+LP+  ++  +  AC+ +  L+ G + H    +     N    NA
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNA 459

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L  MY  C  M +A ++F  +  KD++SW + +   +    +D AR  FD M  RD V W
Sbjct: 460 LITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSW 519

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           T +I  Y    +  EA+  F+ M   +  P+   +  +L  C +LGA ++G+ + T   K
Sbjct: 520 TTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIK 579

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
             + +++ V NALI MY KCG  + ++R+F  M  +D FTW  +I G A +G G +++ M
Sbjct: 580 LGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKM 638

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           +  M  A ++P+EVT+VG+L+AC+H G+VDEG ++F  M+  +G+ P   HY CMVDLLG
Sbjct: 639 YQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLG 698

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R G +  A + I +MP++P++++W ALLGAC++H++AE+ + AA+++  ++P N   YV+
Sbjct: 699 RTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVM 758

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L NIY++   W    E+R+++  +G+ K PGCS  ++   +H FV GDK H Q +EI   
Sbjct: 759 LSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVAT 818

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L+E+ + LK  GY+PD   V  D+ EE KE ++  HSEKLA+A+ L+++  G+ I+I+KN
Sbjct: 819 LEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKN 878

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C DCH   K VS V  R++ +RD  RFHHF++GSCSC+D+W
Sbjct: 879 LRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 132/494 (26%), Positives = 205/494 (41%), Gaps = 79/494 (15%)

Query: 43  GLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT----------------- 85
           G+L   TV    +  C  + GD+  A ++F  +P   V  WN+                 
Sbjct: 121 GMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNL 180

Query: 86  --------------MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
                         MI GY RI++H     I+  M +  + PD   F   L        +
Sbjct: 181 FEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNL 240

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV-DMARGIFDVSYKDDVVTWNAMFSG 190
           +  + L    LK GF+  V +  A+++ Y     V D A   F+   + +  TW+ M + 
Sbjct: 241 DVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAA 300

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
                + D                                       A   V E   V +
Sbjct: 301 LSHGGRID---------------------------------------AAIAVYERDPVKS 321

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           +    AL    A CG +  A  +F  I    V+SW A++TGY+  G V+ A++ FD+MP 
Sbjct: 322 IACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPF 381

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           R+ + W  MI GY +  R  EAL L +E+  S + P   ++ SI  AC+N+ ALE G  V
Sbjct: 382 RNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
            +   K   + + F  NALI MY KC ++E A++VF  M+ KD  +W + +  L  N   
Sbjct: 442 HSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLL 501

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           D++ + F  ML      D+V++  ++SA  H    +E    F  M  +H + PN      
Sbjct: 502 DEARNTFDNMLS----RDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSP---I 553

Query: 491 MVDLLGRAGHLNEA 504
           +  LLG  G L  +
Sbjct: 554 LTILLGVCGSLGAS 567



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 178/364 (48%), Gaps = 19/364 (5%)

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G V  AR +FD   + D++ WN+M S Y      D  R L+  +   G + T     ++L
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS-GGNMRTGA---ILL 103

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           S   +L  +   +R    V +  +  N +  NA+   Y   G++  A  +F  + ++DV 
Sbjct: 104 SGYGRLGRVLEARR----VFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVS 159

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           SW +++TGY +  Q+  AR  F++MPER+ V WT MI GY R+    +A  +F +M    
Sbjct: 160 SWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV-EKA 402
           + PD+    S L+A   LG L++ E ++    K   + D+ +G A++++Y +   V + A
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
            + F  M+ ++++TW+ MI  L+  G  D ++ ++ +    SI         +++     
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI----ACRTALITGLAQC 335

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G +D+ R  F  +      EP    +  ++    + G +NEA E+   MP + N+I W  
Sbjct: 336 GRIDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAG 389

Query: 523 LLGA 526
           ++  
Sbjct: 390 MIAG 393



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
           + G V +A+ VF  M R+D   W +MI     NG  D + D++  +   ++    +    
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI---- 101

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           +LS     G V E R  F  M     +E N   +  M+    + G +  A  +   MP +
Sbjct: 102 LLSGYGRLGRVLEARRVFDGM-----LERNTVAWNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
             S     L G C       +  + A+ + E  P+   V
Sbjct: 157 DVSSWNSMLTGYCH-----SLQMVDARNLFEKMPERNLV 190


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/482 (45%), Positives = 324/482 (67%), Gaps = 6/482 (1%)

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEI-FGNIKNKDVISWTAIVTGYINRGQVDMAR 302
           +C  + + ++ N+L  +Y + G +  A  + +      DV+SW  +V+GY   G +  AR
Sbjct: 106 KCGALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
           + F +MPER+ V W+AM+D  +R   F EAL +F  M     RPD   +VS+L ACA+LG
Sbjct: 166 EVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLG 225

Query: 363 ALELGEWVKTYIDKNKV---KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
           A+E G WV  Y++       + ++ +  AL+DMYCKCG +E A +VF  + R+D   W A
Sbjct: 226 AVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNA 285

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           MI GLA+NG+G+++L++F +ML+   +P+E T++ VL ACTHTG VDEG+  F  M   +
Sbjct: 286 MIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQ-DY 344

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           GI+P   HYGC+ DLLGRAG++ EA  ++ +MPM+P++  WGAL+ +C++H D  + E  
Sbjct: 345 GIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERV 404

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
            K+++EL+P +   YV+L N+YA   RW+  R +RQM+ DRG KK  G S IE+NG+VHE
Sbjct: 405 GKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHE 464

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQHSEKLAM 658
           F++GD  HP T++IY  L+++   L+ +GY+ D S+V +D+  EEDK  A+  HSE+LA+
Sbjct: 465 FISGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLAL 524

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           AFG+++   GV IRIVKNLR+C DCH  +KLVS +Y+RE+IVRD+ RFH F+ G CSC D
Sbjct: 525 AFGILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCND 584

Query: 719 YW 720
           YW
Sbjct: 585 YW 586



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 126/276 (45%), Gaps = 35/276 (12%)

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           V   N ++S Y   G++  AR +F    + ++V+W+AM     R  +F E   +F  M R
Sbjct: 145 VVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMR 204

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI---VPNLILENALTDMYAACGE 266
           +   P  V +V VL ACA L  ++ G+  HRY++         NL+LE AL DMY  CG 
Sbjct: 205 EEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGC 264

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           M  A ++F  +  +DV+ W A++ G                            ++GY   
Sbjct: 265 MEDAWQVFDGVHRRDVVLWNAMIGGLA--------------------------MNGY--- 295

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
                AL LFR M      P+E T +++L AC + G ++ G+ V   +    +K      
Sbjct: 296 --GERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHY 353

Query: 387 NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
             L D+  + G+VE+A+ +  +M +      W A++
Sbjct: 354 GCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALM 389



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 145/346 (41%), Gaps = 38/346 (10%)

Query: 40  IKLGLLTNPTVQNKLVTFCCS-------------------------------EKGDMKYA 68
            K G L +P V N L+   CS                               + GD+  A
Sbjct: 105 FKCGALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAA 164

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            +VF ++P  ++  W+ M+    R       + ++  M++ + RPD      +LK     
Sbjct: 165 REVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHL 224

Query: 129 IAVEFGKELHCHVLKFGFDS---SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
            AVE G+ +H ++    F     ++ ++ AL+  YC CG ++ A  +FD  ++ DVV WN
Sbjct: 225 GAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWN 284

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           AM  G       +   +LF  M +KG +P   T + VL AC     +D GKR  + +++ 
Sbjct: 285 AMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDY 344

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDMARQY 304
            I P       L D+    G +  A  +  ++  +   S W A+++       +++  + 
Sbjct: 345 GIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERV 404

Query: 305 FDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
             ++ E    D   +  + + Y    R+ EA T+ + M+    + +
Sbjct: 405 GKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKE 450


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/559 (40%), Positives = 354/559 (63%), Gaps = 34/559 (6%)

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ-FDETRKLFGEMERKGVL-PTSVTIVL 221
           G++D AR +F    + ++ +WN+M  G  + +    E   LF +M R+G   P + T+  
Sbjct: 38  GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 97

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           VL AC+ +  L+ G++ H  V +     +  +E AL + YA C               +D
Sbjct: 98  VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKC---------------ED 142

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           ++                +A + FD++ +R+ V W+ MI GY R+    EAL LFR+MQ 
Sbjct: 143 IV----------------LASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQK 186

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
           + + PDE T+VS+++ACA  GAL+ G+WV  YI+K  ++ D+ +  AL++MY KCG +E+
Sbjct: 187 AGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIER 246

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A+ VF  M  KD   W++MIVGLAING  + +L+ F +M  A + P+ VT++GVLSAC H
Sbjct: 247 AKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAH 306

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
           +G+V EGR Y++ M ++ GI P+   YGCMVDLL RA  + +A  +++ MP+ PN ++W 
Sbjct: 307 SGLVSEGRRYWSSM-LEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWR 365

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
            LL  C+  ++ + +E+ A+++LEL+P N   Y+LL N+YA+ ++W+   ++R+ +   G
Sbjct: 366 TLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMG 425

Query: 582 IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
           IK  PGCS IE++G+VHEFV GD SHP+  E+   L +++  +  VG+ P IS+V  +V 
Sbjct: 426 IKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVV 485

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
           +E+KE A+ +HSE+LA+A+GL+ +   + IRIVKNLR+C DCH + K++S  Y RE+IVR
Sbjct: 486 DEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVR 545

Query: 702 DKTRFHHFKHGSCSCKDYW 720
           D+ RFH F +GSCSC+D+W
Sbjct: 546 DRVRFHKFVNGSCSCRDFW 564



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 212/411 (51%), Gaps = 37/411 (9%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQN--KLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNT 85
           M  L+QIH++ +   +  +       K++ FC  S  GD+ YA K+F +I RP++  WN+
Sbjct: 1   MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 60

Query: 86  MIKGYSRIDS-HKNGVLIYLDMLKSDV-RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           MI+G S+  +  K  V+++  M++     P+ +T  F+LK  +   A+E G+++H +VLK
Sbjct: 61  MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 120

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
            GF SS FV+ AL++ Y  C ++ +A  +FD     ++V W+ M SGY R+   +E   L
Sbjct: 121 SGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGL 180

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           F +M++ GV+P  VT+V V+SACA    LD GK  H Y+ +  I  +L L  AL +MYA 
Sbjct: 181 FRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAK 240

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           CG +  A E+F  +  KD  +W++++ G    G  +                        
Sbjct: 241 CGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAE------------------------ 276

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
                  +AL  F  M+ + ++P+  T + +L+ACA+ G +  G    + + +  +   +
Sbjct: 277 -------DALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSM 329

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKS 433
            +   ++D+ C+   VE A  +   M +  +   W  ++VG   + + DKS
Sbjct: 330 ELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKS 380



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 126/251 (50%), Gaps = 2/251 (0%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+T T    ++       ++ + +Q+H+  +K G  ++P V+  LV F  ++  D+  A 
Sbjct: 90  PNTFTMAF-VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFY-AKCEDIVLAS 147

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           KVF +I   ++  W+TMI GY+RI      + ++ DM K+ V PD  T   ++       
Sbjct: 148 KVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASG 207

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A++ GK +H ++ K   ++ + +  AL++ Y  CG ++ A+ +FD     D   W++M  
Sbjct: 208 ALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIV 267

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           G       ++  + F  ME   V P  VT + VLSACA    +  G+R    + E  IVP
Sbjct: 268 GLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVP 327

Query: 250 NLILENALTDM 260
           ++ L   + D+
Sbjct: 328 SMELYGCMVDL 338



 Score = 47.4 bits (111), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 5/189 (2%)

Query: 16  ETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           E  ++S I  C +   L   K +H+   K  + T+  +   LV    ++ G ++ A +VF
Sbjct: 193 EVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMY-AKCGCIERAKEVF 251

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             +P      W++MI G +     ++ +  +  M ++ V+P++ TF  +L        V 
Sbjct: 252 DAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVS 311

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGY 191
            G+     +L+FG   S+ +   ++   C    V+ A  + + +    + V W  +  G 
Sbjct: 312 EGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGC 371

Query: 192 KRVKQFDET 200
           K+ K  D++
Sbjct: 372 KKSKNLDKS 380


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/627 (37%), Positives = 362/627 (57%), Gaps = 42/627 (6%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           PP  L +E   IS +++C++  Q+ QI +Q I  G   N  +  KLVT C + K  M YA
Sbjct: 32  PPHRLLEER-FISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLK-RMTYA 89

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            ++F +IP P++ LWN+M +GY++ +S++  V ++  M   D+RP+ +TFP +LK   + 
Sbjct: 90  RQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKI 149

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            A+  G+++HC ++K GF  + FV   LI  Y   G V  A  IF   ++ +VV W +M 
Sbjct: 150 NALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMI 209

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           +GY         R+LF     + V                                    
Sbjct: 210 NGYILSADLVSARRLFDLAPERDV------------------------------------ 233

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
              +L N +   Y   G+M  A ++F  + N+DV+ W  ++ GY   G V+     F++M
Sbjct: 234 ---VLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEM 290

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELG 367
           PER+   W A+I GY     F E L  F+ M + S++ P++ T+V++L+ACA LGAL+LG
Sbjct: 291 PERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLG 350

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           +WV  Y + + +K +++VGNAL+DMY KCG +E A  VFR M  KD  +W  +I GLA++
Sbjct: 351 KWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMH 410

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
             G  +L++F QM  A   PD +T++G+L ACTH G+V++G  YF  M   + I P   H
Sbjct: 411 SRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEH 470

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           YGCMVD+L RAG L +A+  ++ MP++ + ++W  LLGACR++++ E+AE+A ++++EL+
Sbjct: 471 YGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELE 530

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P N A YV+L NIY    RW++   L+  + D G KK PGCS+IE+N  V EF + D+ H
Sbjct: 531 PKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERH 590

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDIS 634
           PQ +EIY  L  +   L+  GY+PD++
Sbjct: 591 PQIEEIYGVLRGLVKVLRSFGYVPDLT 617


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/720 (34%), Positives = 397/720 (55%), Gaps = 37/720 (5%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           S +     +T      + ++ CE    +K   QIH+  +K G + +  V N LV      
Sbjct: 149 SEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYV-R 207

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
            G M  A  +F  +    +  WN+M+ G+ +   +   +  + D+  +D++PD  +   +
Sbjct: 208 FGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISI 267

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           +    R   +  GKE+H + +K GFDS++ V N LI  Y  C  +      FD+    D+
Sbjct: 268 IVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDL 327

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           ++W    +GY + K + +  +L  +++ +G+   +  I  +L AC  L  L   K  H Y
Sbjct: 328 ISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGY 387

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
                +  + +L+N + D+Y  CG + +A+ IF +I+ K                     
Sbjct: 388 TIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIFESIECK--------------------- 425

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                     D V WT+MI  Y+      +AL +F  M+ + + PD  T+VSIL+A  +L
Sbjct: 426 ----------DVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSL 475

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
             L+ G+ +  +I +     +  + N L+DMY +CG VE A ++F     ++   WTAMI
Sbjct: 476 STLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMI 535

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
               ++G+G+ ++++F +M    IIPD +T++ +L AC+H+G+V+EG+ +   M  ++ +
Sbjct: 536 SAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQL 595

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           EP   HY C+VDLLGR   L EA +++K+M  +P   VW ALLGACR+H + E+ E+AA+
Sbjct: 596 EPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAE 655

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           ++LELD DN   YVL+ N++AA  RW +  E+R  +   G+ K PGCS IE+   +H F+
Sbjct: 656 KLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFL 715

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFV-GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
           + DK HP+  +IY KL ++T  LK   GY+     V  +VGEE+K + +Y HSE+LA+A+
Sbjct: 716 SRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAIAY 775

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           GL+++  G  IR+ KNLR+C DCH    LVS  ++RE+IVRD +RFHHFK G CSC D+W
Sbjct: 776 GLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 167/608 (27%), Positives = 285/608 (46%), Gaps = 56/608 (9%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--GFTRD 128
           +F K+   S+  WN M+ GY         + +Y +M    V  D+YTFP LLK  G   D
Sbjct: 14  IFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVED 73

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY-KDDVVTWNAM 187
           +    G E+H   +K+G DS VFV N+L++ Y  C +++ AR +FD  Y ++DVV+WN++
Sbjct: 74  LFC--GAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSI 131

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            S Y       E   LF EM + GV+  + T    L AC     + +G + H  + +   
Sbjct: 132 ISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGR 191

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
           V ++ + NAL  MY   G+M  A  IFGN++ KD+++W +++TG+I  G           
Sbjct: 192 VLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG----------- 240

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                + EAL  F ++Q ++++PD+ +I+SI+ A   LG L  G
Sbjct: 241 --------------------LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           + +  Y  KN   ++I VGN LIDMY KC  +    R F  M  KD  +WT    G A N
Sbjct: 281 KEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQN 340

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
               ++L++  Q+    +  D      +L AC     + + +E     TI+ G+  +   
Sbjct: 341 KCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHG-YTIRGGL-SDPVL 398

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR---DAEMAEMAAKQIL 544
              ++D+ G  G ++ A+ + +++  K + + W +++ +C VH    +  +   ++ +  
Sbjct: 399 QNTIIDVYGECGIIDYAVRIFESIECK-DVVSWTSMI-SCYVHNGLANKALEVFSSMKET 456

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNF---RELRQMILDRG--IKKTPGCSMIEMNGVVHE 599
            L+PD    YV L +I +A          +E+   I+ +G  ++ +   ++++M      
Sbjct: 457 GLEPD----YVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGS 512

Query: 600 FVAGDKSHPQTKEIYLKL-DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
                K    TK   L L   M S     GY     E+F+ + +   E+ +  H   LA+
Sbjct: 513 VEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKD---EKIIPDHITFLAL 569

Query: 659 AFGLISSG 666
            +    SG
Sbjct: 570 LYACSHSG 577



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 154/550 (28%), Positives = 253/550 (46%), Gaps = 46/550 (8%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF-RKIPRPSVCLWNTMIKGYSR 92
           +IH   IK G  +   V N LV    ++  D+  A K+F R   R  V  WN++I  YS 
Sbjct: 79  EIHGLAIKYGCDSFVFVVNSLVALY-AKCNDINGARKLFDRMYVRNDVVSWNSIISAYSG 137

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  + ++ +MLK+ V  + YTF   L+       ++ G ++H  +LK G    V+V
Sbjct: 138 NGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYV 197

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL++ Y   G++  A  IF      D+VTWN+M +G+ +   + E  + F +++   +
Sbjct: 198 ANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADL 257

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P  V+I+ ++ A  +L  L  GK  H Y  +     N+++ N L DMYA C  M +   
Sbjct: 258 KPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGR 317

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
            F  + +KD+ISWT    GY                                    + +A
Sbjct: 318 AFDLMAHKDLISWTTAAAGYAQN-------------------------------KCYLQA 346

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L L R++Q   +  D   I SIL AC  L  L   + +  Y  +  + +D  + N +ID+
Sbjct: 347 LELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGL-SDPVLQNTIIDV 405

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y +CG ++ A R+F  +  KD  +WT+MI     NG  +K+L++FS M    + PD VT 
Sbjct: 406 YGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTL 465

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           V +LSA      + +G+E      I+ G     +    +VD+  R G + +A ++     
Sbjct: 466 VSILSAVCSLSTLKKGKEIHG-FIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTK 524

Query: 513 MKPNSIVWGALLGACRVHRDAEMA-----EMAAKQILELDPDNEAVYVLL--CNIYAACN 565
            + N I+W A++ A  +H   E A      M  ++I+   PD+     LL  C+     N
Sbjct: 525 NR-NLILWTAMISAYGMHGYGEAAVELFMRMKDEKII---PDHITFLALLYACSHSGLVN 580

Query: 566 RWDNFRELRQ 575
              +F E+ +
Sbjct: 581 EGKSFLEIMK 590



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 153/339 (45%), Gaps = 33/339 (9%)

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
           Y  CG V  A  IFD   +  + TWNAM  GY    +     +++ EM   GV   S T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK- 278
            ++L AC  ++DL  G   H    +      + + N+L  +YA C ++  A ++F  +  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
             DV+SW +I++ Y   G                                  EAL LF E
Sbjct: 122 RNDVVSWNSIISAYSGNGMC-------------------------------TEALCLFSE 150

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M  + +  + +T  + L AC +   ++LG  +   I K+    D++V NAL+ MY + G 
Sbjct: 151 MLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGK 210

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           + +A  +F  +  KD  TW +M+ G   NG   ++L+ F  +  A + PD+V+ + ++ A
Sbjct: 211 MPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVA 270

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
               G +  G+E  A   I++G + N      ++D+  +
Sbjct: 271 SGRLGYLLNGKEIHA-YAIKNGFDSNILVGNTLIDMYAK 308



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 3/230 (1%)

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G V  A   FD+M ER    W AM+ GY+       AL ++REM+   +  D +T   +L
Sbjct: 6   GSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLL 65

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
            AC  +  L  G  +     K    + +FV N+L+ +Y KC D+  A+++F  M +R D 
Sbjct: 66  KACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDV 125

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +W ++I   + NG   ++L +FS+ML+A ++ +  T+   L AC  +  +  G +  A 
Sbjct: 126 VSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAA 185

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           + ++ G   +      +V +  R G + EA  +  N+  K + + W ++L
Sbjct: 186 I-LKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGK-DIVTWNSML 233



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 7/138 (5%)

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCG V  A+ +F +M  +  FTW AM+ G   NG    +L+M+ +M    +  D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 452 YVGVLSACTHTGMVDE---GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
           +  +L AC   G+V++   G E    + I++G +        +V L  +   +N A ++ 
Sbjct: 61  FPVLLKAC---GIVEDLFCGAEIHG-LAIKYGCDSFVFVVNSLVALYAKCNDINGARKLF 116

Query: 509 KNMPMKPNSIVWGALLGA 526
             M ++ + + W +++ A
Sbjct: 117 DRMYVRNDVVSWNSIISA 134


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/732 (34%), Positives = 394/732 (53%), Gaps = 63/732 (8%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+    + +S  Q KQ+H+Q ++  L  +P++ + +++   S    +  +  +F  +P P
Sbjct: 11  LLQNPSSVKSKSQAKQLHAQILRTSL-PSPSLLSTILSIY-SNLNLLHDSLLIFNSLPSP 68

Query: 79  SVCL-WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
              L W ++I+ Y+      + +  ++ ML S   PD+  FP +LK  T    + FG+ +
Sbjct: 69  PTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESV 128

Query: 138 HCHVLKFGFDSSVFVQNALISTYC---LCGEVDMARGIFDV-------------SY---- 177
           H  +++ G    ++  NAL++ Y       EV+  + +FD              SY    
Sbjct: 129 HGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGS 188

Query: 178 ---------KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
                    K D+V+WN + SG  +    ++   +  EM    + P S T+  VL   A+
Sbjct: 189 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAE 248

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
             +L  GK  H Y        ++ + ++L DMYA C                        
Sbjct: 249 YVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCT----------------------- 285

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
                   +VD + + F  +P+ D + W ++I G ++   F E L  F++M  + I+P+ 
Sbjct: 286 --------RVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNH 337

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            +  SI+ ACA+L  L LG+ +  YI +++   ++F+ +AL+DMY KCG++  A+ +F +
Sbjct: 338 VSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDK 397

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M   D  +WTAMI+G A++GH   ++ +F +M    + P+ V ++ VL+AC+H G+VDE 
Sbjct: 398 MELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEA 457

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
            +YF  MT  + I P   HY  + DLLGR G L EA E I +M ++P   VW  LL ACR
Sbjct: 458 WKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACR 517

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
           VH++ E+AE  +K++  +DP N   YVLL NIY+A  RW + R+LR  + D+G+KK P C
Sbjct: 518 VHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPAC 577

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERA 648
           S IE+   VH FVAGDKSHP    I   L  +   ++  GY+ D +EV  DV EE K   
Sbjct: 578 SWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYL 637

Query: 649 VYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHH 708
           +  HSE+LA+ FG+IS+  G TIR+ KNLR+CVDCH   K +S +  RE++VRD +RFHH
Sbjct: 638 LCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHH 697

Query: 709 FKHGSCSCKDYW 720
           FK G CSC D+W
Sbjct: 698 FKDGKCSCGDFW 709


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 210/469 (44%), Positives = 318/469 (67%), Gaps = 8/469 (1%)

Query: 255 NALTDMYAAC--GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           N +   Y+ C  G++  A ++F  + +KD ++   ++T Y      + A + F+ MPE+D
Sbjct: 17  NNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYF-----ESAYKVFELMPEKD 71

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W ++I+G+    +  EALTL++ M +  + PD FT+VS+L+ACA L  L LG     
Sbjct: 72  IVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHV 131

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
           Y+ K  +  ++   NAL+D+Y KCG + +A+++F EM + ++  +WT++IVGLA+NG G 
Sbjct: 132 YMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGK 191

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L+ F  M R  ++P E+T+VGVL AC+H G+V+EG EYF  M  Q+ I P   HYGCM
Sbjct: 192 EALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCM 251

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAG L EA + I++MP++PN+++W  LLGAC +H    +   A  ++L+L+P + 
Sbjct: 252 VDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDS 311

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL N+YA+  RW +  E+R+ +L  G++KTPG S++E+   VHEFV GD++HPQ++
Sbjct: 312 GDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQSE 371

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            IY  L EM   LK  GY+P  + V  D+ EE+KE A++ HSEK+A+AF LI++ PG  I
Sbjct: 372 AIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPGTPI 431

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI+KNLR+C DCH   KL+S V++R+++VRD +RFHHF+ GSCSC+DYW
Sbjct: 432 RIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 147/343 (42%), Gaps = 33/343 (9%)

Query: 36  HSQTIKLGLLTNPTVQNKLVT-FCCSEKGDMKYACK------------------------ 70
           H Q +K G+ ++  V N +++ +     GD+  ACK                        
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESA 60

Query: 71  --VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
             VF  +P   +  WN++I G++        + +Y  M    V PD +T   LL      
Sbjct: 61  YKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAEL 120

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAM 187
             +  G+  H +++K G + ++   NAL+  Y  CG +  AR IFD +  + +VV+W ++
Sbjct: 121 ATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSL 180

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CK 246
             G        E  + F +MER+G++P+ +T V VL AC+    ++ G    + +KE   
Sbjct: 181 IVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYD 240

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDM---AR 302
           IVP +     + D+    G +  A +   ++    + + W  ++      G + +   AR
Sbjct: 241 IVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFAR 300

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
               Q+  +D   +  + + Y    R+ +   + R M +  +R
Sbjct: 301 ARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVR 343


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/621 (37%), Positives = 365/621 (58%), Gaps = 34/621 (5%)

Query: 101 LIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
           L  LD++    + P+   +  +L   T    ++ G+ +H H+    F+  + + N +++ 
Sbjct: 90  LYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNM 149

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
           Y  CG ++ A+ +FD     D+V+W  + SGY +  Q  E   LF +M   G  P   T+
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
             +L A         G++ H +  +     N+ + ++L DMYA    M  A  IF ++  
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAA 269

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           K+V+SW A++ G+  +G+ +                                 + LF +M
Sbjct: 270 KNVVSWNALIAGHARKGEGE-------------------------------HVMRLFXQM 298

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
                 P  FT  S+L ACA+ G+LE G+WV  ++ K+  +   ++GN LIDMY K G +
Sbjct: 299 LRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSI 357

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           + A++VFR ++++D  +W ++I G A +G G ++L +F QML+A + P+E+T++ VL+AC
Sbjct: 358 KDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTAC 417

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H+G++DEG+ YF ++  +H IE   AH+  +VDLLGRAG LNEA + I+ MP+KP + V
Sbjct: 418 SHSGLLDEGQYYF-ELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAV 476

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           WGALLGACR+H++ ++   AA+QI ELDP +   +VLL NIYA+  R  +  ++R+M+ +
Sbjct: 477 WGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKE 536

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
            G+KK P CS +E+   VH FVA D SHP  +EI    ++++  +K +GY+PD S V   
Sbjct: 537 SGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFF 596

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           + ++D+E  +  HSEKLA+AF ++ + PG+TIRI KN+R+C DCH   K  S V  RE+I
Sbjct: 597 MNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREII 656

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           VRD  RFHHF HG CSC+DYW
Sbjct: 657 VRDTNRFHHFLHGMCSCRDYW 677



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 199/420 (47%), Gaps = 42/420 (10%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           S+ P  TL  +      +  C  + +LKQ   IH+  I+     +  V    +    ++ 
Sbjct: 100 SLEPERTLYSKM-----LNKCTYLRKLKQGRAIHAH-IQSSTFEDDLVLLNFILNMYAKC 153

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A  +F K+P   +  W  +I GYS+       + ++  ML    +P+ +T   LL
Sbjct: 154 GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLL 213

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K      +   G++LH   LK+G+D +V V ++L+  Y     +  A+ IF+     +VV
Sbjct: 214 KASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVV 273

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNA+ +G+ R  + +   +LF +M R+G  PT  T   VL ACA    L+ GK  H +V
Sbjct: 274 SWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHV 332

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +    P   + N L DMYA  G +  A ++F  +  +D++SW +I++GY   G    A 
Sbjct: 333 IKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEAL 392

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
           Q F+QM +                               + ++P+E T +S+LTAC++ G
Sbjct: 393 QLFEQMLK-------------------------------AKVQPNEITFLSVLTACSHSG 421

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            L+ G++    + K+K++  +     ++D+  + G + +A +   EM ++     W A++
Sbjct: 422 LLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 481



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 157/338 (46%), Gaps = 12/338 (3%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           + L+    T  S H  +Q+H+ ++K G   N  V + L+    +    M+ A  +F  + 
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMY-ARWAHMREAKVIFNSLA 268

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             +V  WN +I G++R    ++ + ++  ML+    P ++T+  +L   +   ++E GK 
Sbjct: 269 AKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSG-SLEQGKW 327

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H HV+K G     ++ N LI  Y   G +  A+ +F    K D+V+WN++ SGY +   
Sbjct: 328 VHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGL 387

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
             E  +LF +M +  V P  +T + VL+AC+    LD G+     +K+ KI   +     
Sbjct: 388 GAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVT 447

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDM----ARQYFDQMPER 311
           + D+    G +  A +    +  K   + W A++        +D+    A Q F+  P  
Sbjct: 448 VVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHD 507

Query: 312 D--YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
              +VL + +   Y    R  +A  + + M+ S ++ +
Sbjct: 508 SGPHVLLSNI---YASAGRLSDAAKVRKMMKESGVKKE 542


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/694 (35%), Positives = 382/694 (55%), Gaps = 62/694 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC-KVFRKIPRPSVCLWNTMIKGYS 91
           KQ+HS+ I  G   +  V N L+      K D + +C KVF ++   +   WN++I   +
Sbjct: 195 KQVHSKLIACGFKGDTFVGNALIDMYA--KCDDEESCLKVFDEMGERNQVTWNSIISAEA 252

Query: 92  RIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
           +     + ++++L M +S+  ++PD +TF  LL           G+++H H+++     +
Sbjct: 253 QFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN 312

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           + V+  L+  Y  CG ++ A+ IF+   + +  +WN+M  GY++  +  E  +LF +M+ 
Sbjct: 313 IIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQL 372

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
            G+ P   ++  +LS+C  L D   G+  H ++    +    IL+  L DMYA CG M +
Sbjct: 373 NGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDY 432

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           A +++     KD                             R+  LW +++ GY      
Sbjct: 433 AWKVYDQTIKKD-----------------------------RNTALWNSILAGYANKGLK 463

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
           +E+   F EM  S+I  D  T+V+I+    NL  LE                      AL
Sbjct: 464 KESFNHFLEMLESDIEYDVLTMVTIV----NLLVLE---------------------TAL 498

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           +DMY KCG + KA+ VF  M  K+  +W AMI G + +G   ++L ++ +M +  + P+E
Sbjct: 499 VDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNE 558

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
           VT++ +LSAC+HTG+V+EG   F  M   + IE    HY CMVDLLGRAG L +A E ++
Sbjct: 559 VTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVE 618

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
            MP++P    WGALLGACRVH+D +M  +AA+++ ELDP N   YV++ NIYAA  RW  
Sbjct: 619 KMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKE 678

Query: 570 FRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGY 629
             ++RQM+  +G+KK PG S IE+N  +  F AG K+HP+T+EIY  L  +T   K +GY
Sbjct: 679 VEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGY 738

Query: 630 MPDISEVFL---DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
           +PD S +     D+ EE++E  + QHSE+LA++ GLIS     TIR+ KNLR+C DCH  
Sbjct: 739 IPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTA 798

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            K +S +  R +I RD  RFHHF++G CSC DYW
Sbjct: 799 TKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 139/277 (50%), Gaps = 7/277 (2%)

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVD---MARQYFDQMPERDYVLWTAMIDGYLRVNR 328
           ++  N  N D    T I+  Y   G +D    AR+ F++MPER+   W  MI  Y RV+ 
Sbjct: 96  QMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDD 155

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           + EA  +F  M    + PD FT  S L  C  L + + G+ V + +     K D FVGNA
Sbjct: 156 YMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNA 215

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA--SII 446
           LIDMY KC D E   +VF EM  +++ TW ++I   A  GH + +L +F +M  +   I 
Sbjct: 216 LIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQ 275

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD+ T+  +L+ C +    ++GR+  A + I+  I  N      +V +    G LN A E
Sbjct: 276 PDQFTFTTLLTLCANQRNDNQGRQIHAHL-IRANITKNIIVETELVHMYSECGRLNYAKE 334

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
           +   M  + N+  W +++   + + + + A    KQ+
Sbjct: 335 IFNRMAER-NAYSWNSMIEGYQQNGETQEALRLFKQM 370


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/618 (37%), Positives = 353/618 (57%), Gaps = 33/618 (5%)

Query: 104 LDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           LD L S ++ P    +   +    +   ++  +++H H+    F+   F+ N+LI  YC 
Sbjct: 39  LDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCK 98

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
           CG V  A  +FD   K D+V+W ++ +GY +     E   L   M +    P   T   +
Sbjct: 99  CGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASL 158

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L A     D  +G + H    +C    ++ + +AL DMYA CG+M  A  +F  + +K+ 
Sbjct: 159 LKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNG 218

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +SW A+++G+  +G                        DG         AL +F EMQ +
Sbjct: 219 VSWNALISGFARKG------------------------DG-------ETALMVFAEMQRN 247

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
                 FT  SI +  A +GALE G+WV  ++ K++ K   FVGN ++DMY K G +  A
Sbjct: 248 GFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDA 307

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           ++VF  +L KD  TW +M+   A  G G +++  F +M ++ I  +++T++ +L+AC+H 
Sbjct: 308 RKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHG 367

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G+V EG+ YF DM  ++ +EP   HY  +VDLLGRAG LN AL  I  MPM+P + VWGA
Sbjct: 368 GLVKEGKHYF-DMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGA 426

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL ACR+H++A++ + AA  + +LDPD+    VLL NIYA+   WD    +R+M+   G+
Sbjct: 427 LLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGV 486

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK P CS +E+   VH FVA D +HP+ +EIY   DE++  ++  GY+PD+  V L V E
Sbjct: 487 KKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDE 546

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           +++E  +  HSEK+A+AF LI    G TIRI+KN+R+C DCH   K +S V++RE++VRD
Sbjct: 547 QEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVVRD 606

Query: 703 KTRFHHFKHGSCSCKDYW 720
             RFHHF +GSCSC DYW
Sbjct: 607 TNRFHHFSNGSCSCGDYW 624



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 194/432 (44%), Gaps = 35/432 (8%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            I+     +++   ++IH          +  + N L+   C + G +  A KVF K+ + 
Sbjct: 57  FITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYC-KCGSVVEAHKVFDKMRKK 115

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            +  W ++I GY++ D     + +   MLK   +P+ +TF  LLK          G ++H
Sbjct: 116 DMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIH 175

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
              +K  +   V+V +AL+  Y  CG++DMA  +FD     + V+WNA+ SG+ R    +
Sbjct: 176 ALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGE 235

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
               +F EM+R G   T  T   + S  A +  L+ GK  H ++ + +      + N + 
Sbjct: 236 TALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTML 295

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA  G M  A ++F  + NKD+++W +++T +   G                      
Sbjct: 296 DMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLG-------------------- 335

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
                      +EA++ F EM+ S I  ++ T + ILTAC++ G ++ G+     I +  
Sbjct: 336 -----------KEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYN 384

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQR-VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
           ++ +I     ++D+  + G +  A   +F+  +      W A++   A   H +  +  F
Sbjct: 385 LEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLA--ACRMHKNAKVGQF 442

Query: 438 SQMLRASIIPDE 449
           +      + PD+
Sbjct: 443 AADHVFQLDPDD 454


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/741 (34%), Positives = 402/741 (54%), Gaps = 67/741 (9%)

Query: 10  PSTLTQETPLISPIETCESMHQL------KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           PS+ T    L+S    C ++ +       KQIH    + G     T  N  +    ++ G
Sbjct: 111 PSSFT----LVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWR--TFSNNALMAMYAKLG 164

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            +  A  +        +  WN+MI  +S+ +     ++    M+   V+PD  TF  +L 
Sbjct: 165 RLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLP 224

Query: 124 GFTRDIAVEFGKELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
             +    +  GKE+H + L+      + FV +AL+  YC CG+V+  R +FD      + 
Sbjct: 225 ACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIG 284

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
            WNAM +GY + +  ++   LF EME   G+   + T+  ++ A  + + +   +  H Y
Sbjct: 285 LWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGY 344

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           V +  +  N  L+NAL DMY+  G+                               +  +
Sbjct: 345 VIKRGLETNRYLQNALIDMYSRMGD-------------------------------IKTS 373

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN----------------IR 345
           ++ FD M +RD V W  +I  Y+   R  +AL L  EMQ                    +
Sbjct: 374 KRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFK 433

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           P+  T++++L  CA+L AL  G+ +  Y  +N + + + VG+AL+DMY KCG +  A+RV
Sbjct: 434 PNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRV 493

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR-----ASIIPDEVTYVGVLSACT 460
           F +M  ++  TW  +I+   ++G G +SL++F  M+        + P EVT++ + ++C+
Sbjct: 494 FDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCS 553

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI-V 519
           H+GMVDEG   F  M  +HGIEP   HY C+VDL+GRAG + EA  ++  MP   + +  
Sbjct: 554 HSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGA 613

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           W +LLGACR++ + E+ E+AA+ +L+L PD  + YVLL NIY++   WD    LR+ +  
Sbjct: 614 WSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKA 673

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
            G+KK PGCS IE    VH+F+AGD SHPQ+++++  L+ ++  LK  GY+PD + V  D
Sbjct: 674 MGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHD 733

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           + EE+KE  +  HSEKLA+AFG++++ PG TIR+ KNLR+C DCH  +K +S + DRE+I
Sbjct: 734 IDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREII 793

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           +RD  RFHHFK G+CSC DYW
Sbjct: 794 LRDARRFHHFKDGTCSCGDYW 814



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 129/461 (27%), Positives = 213/461 (46%), Gaps = 49/461 (10%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD--SSVFVQNALISTYCLC 163
           M+ S   PDN+ FP +LK       +  GK++H HV KFG+   SSV + N L++ Y  C
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G +  A  +FD   + D V+WN++ S   R ++++   K F  M  +G  P+S T+V + 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 224 SACAKLKDLD---VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            AC+ L+  D   +GK+ H      K        NAL  MYA  G +  A  +    +++
Sbjct: 121 LACSNLRKRDGLWLGKQIHGCCFR-KGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDR 179

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           D+++                               W +MI  + +  RF EAL   R M 
Sbjct: 180 DLVT-------------------------------WNSMISSFSQNERFMEALMFLRLMV 208

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTY-IDKNKVKNDIFVGNALIDMYCKCGDV 399
              ++PD  T  S+L AC++L  L  G+ +  Y +  + V  + FVG+AL+DMYC CG V
Sbjct: 209 LEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQV 268

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM-LRASIIPDEVTYVGVLSA 458
           E  + VF  +L +    W AMI G A + H +K+L +F +M   A +  +  T   ++ A
Sbjct: 269 ESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPA 328

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
                 +   +E      I+ G+E N      ++D+  R G +  +  +  +M  + + +
Sbjct: 329 YVRCEGISR-KEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDR-DIV 386

Query: 519 VWGALLGA---CRVHRDA-----EMAEMAAKQILELDPDNE 551
            W  ++ +   C    DA     EM  +  K   + D ++E
Sbjct: 387 SWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDE 427



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 146/600 (24%), Positives = 256/600 (42%), Gaps = 69/600 (11%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGL--LTNPTVQNKLVTFC--CSEKGDMKYACKVFRK 74
           ++  +   + ++  KQIH+   K G    ++ T+ N LV     C   GD   A KVF +
Sbjct: 16  VLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGD---AYKVFDR 72

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF---PFLLKGFTRDIAV 131
           I       WN++I    R +  +  +  +  ML     P ++T            +   +
Sbjct: 73  ITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGL 132

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             GK++H    + G     F  NAL++ Y   G +D A+ +  +    D+VTWN+M S +
Sbjct: 133 WLGKQIHGCCFRKGH-WRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSF 191

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECKIVPN 250
            + ++F E       M  +GV P  VT   VL AC+ L  L  GK  H Y ++   ++ N
Sbjct: 192 SQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIEN 251

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
             + +AL DMY  CG++     +F ++ ++ +  W A++ GY        A+   D+   
Sbjct: 252 SFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGY--------AQSEHDE--- 300

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELGEW 369
                               +AL LF EM+  + +  +  T+ SI+ A      +   E 
Sbjct: 301 --------------------KALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEG 340

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           +  Y+ K  ++ + ++ NALIDMY + GD++ ++R+F  M  +D  +W  +I    I G 
Sbjct: 341 IHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGR 400

Query: 430 GDKSLDMFSQMLR----------------ASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
              +L +  +M R                    P+ +T + VL  C     + +G+E  A
Sbjct: 401 SSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHA 460

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH-RD 532
              I++ +         +VD+  + G LN A  V   MP++ N I W  ++ A  +H + 
Sbjct: 461 -YAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHGKG 518

Query: 533 AEMAEMAAKQILELDPDNEA--VYVLLCNIYAACNRWDNFRE----LRQMILDRGIKKTP 586
            E  E+    + E     E     V    ++A+C+      E      +M  + GI+  P
Sbjct: 519 KESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAP 578


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/595 (40%), Positives = 350/595 (58%), Gaps = 13/595 (2%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           E+H   ++   D    V   L   Y   G +D+A  +   +     V + +    +    
Sbjct: 42  EIHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRG 101

Query: 196 QFDETRKLFGEM--ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                  L  EM   R G+LPT+ T+   L AC  L    VG+  H Y  +  +     +
Sbjct: 102 LHRAALALLSEMLLSRHGLLPTAHTLSASLPACGCLA---VGRALHGYAVKLALSGEPYV 158

Query: 254 ENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
             AL  MYA  GE   A  +F  ++ +  V+S TA+++ Y   GQ+D AR  FD +P +D
Sbjct: 159 ATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKD 218

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W AM+DGY +  R  EAL LFR+M  S + PDE ++V  L+A A LG  E G W+ +
Sbjct: 219 LVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHS 278

Query: 373 YID----KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLA 425
           ++     + +V+ +  VG AL+DMY KCG +E+A  VFR++     +D   W AMI G A
Sbjct: 279 FVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYA 338

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           ++G   ++L+ F Q+    + P ++T++GVL+AC+H+G+VDEGR  FA M  ++GI P  
Sbjct: 339 MHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKV 398

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HYGCMVDLLGRAG + EA +++++M  KP++ +W +LLGACR+H++  + +  A  ++ 
Sbjct: 399 EHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVG 458

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
               N   YVLL N+YAA  +W     +R M+   G++K PGCS +E+   V EFVAGD+
Sbjct: 459 NGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDR 518

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           SHP++ EIY KL+E+ S  +  G++P    V  D+ +  KERA+  HSEKLA+AFGLIS+
Sbjct: 519 SHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLIST 578

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            P   I+IVKNLR C DCH + KLVS    R+++ RD+ RFHHF  GSCSC DYW
Sbjct: 579 PPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 188/471 (39%), Gaps = 92/471 (19%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           +  C S  +  +IH+  ++  +  +  V  +L     +  G +  A  + R+ P P+   
Sbjct: 31  LAGCASASRAAEIHAAAVRASVDQDKAVAFRL-QRAYAASGRLDLAVALLRRTPDPTAVF 89

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKS--DVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
           + + I  +S    H+  + +  +ML S   + P  +T    L        +  G+ LH +
Sbjct: 90  YTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPACG---CLAVGRALHGY 146

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMA------------------------------- 169
            +K       +V  AL+  Y   GE   A                               
Sbjct: 147 AVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDD 206

Query: 170 -RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
            RG+FD   + D+V WNAM  GY +  +  E  +LF +M R GV P  V++VL LSA A+
Sbjct: 207 ARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQ 266

Query: 229 LKDLDVGKRAHRYV----KECKIVPNLILENALTDMYAACGEMGFALEIF---GNIKNKD 281
           L   + G+  H +V    +  ++  N  +  AL DMY  CG +  A+ +F   G   ++D
Sbjct: 267 LGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRD 326

Query: 282 VISWTAIVTGYINRGQ-----------------------------------VDMARQYFD 306
           V++W A++ GY   G+                                   VD  R  F 
Sbjct: 327 VVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFA 386

Query: 307 QMPERDYVL-----WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
            M E   ++     +  M+D   R  R  EA  L + M+    +PD     S+L AC   
Sbjct: 387 AMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKA---KPDAAMWASLLGACRLH 443

Query: 362 GALELGEWVKTYIDKNKVKND-IFVGNALIDMYCKCGDVEKAQRVFREMLR 411
             L LG+ V  Y+  N + N   +V   L +MY   G   +  RV R M+R
Sbjct: 444 KNLALGQRVADYLVGNGLANSGTYV--LLSNMYAAAGKWREVGRV-RSMMR 491



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 19/321 (5%)

Query: 43  GLLTNPTVQNKLVTFCCSEK-GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101
           G+  +P V +      C  K G +  A  +F  +PR  +  WN M+ GY++       + 
Sbjct: 181 GMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALR 240

Query: 102 IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV----FVQNALI 157
           ++  ML+S V PD  +    L    +    E G+ LH  V   G  + V     V  AL+
Sbjct: 241 LFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALV 300

Query: 158 STYCLCGEVDMARGIF-DVSYKD--DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
             Y  CG ++ A  +F D+      DVV WNAM +GY    +  E  + FG++  +G+ P
Sbjct: 301 DMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWP 360

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFALEI 273
           T +T + VL+AC+    +D G+     + +E  IVP +     + D+    G +  A ++
Sbjct: 361 TDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDL 420

Query: 274 FGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQM------PERDYVLWTAMIDGYLRV 326
             ++K K D   W +++        + + ++  D +          YVL + M   Y   
Sbjct: 421 VQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNM---YAAA 477

Query: 327 NRFREALTLFREMQTSNIRPD 347
            ++RE   +   M+ S ++ +
Sbjct: 478 GKWREVGRVRSMMRASGVQKE 498


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/586 (39%), Positives = 340/586 (58%), Gaps = 31/586 (5%)

Query: 135  KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
            +++H      G   ++ V N L+  Y     +D A G+FD     D V+W+ M  G+ +V
Sbjct: 755  RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814

Query: 195  KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
              +      F E+ R G  P + T+  V+ AC  LK+L +G+  H  V +  +  +  + 
Sbjct: 815  GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVC 874

Query: 255  NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
             AL DMY  C E                               ++ AR  FD+M ERD V
Sbjct: 875  AALVDMYGKCRE-------------------------------IEDARFLFDKMXERDLV 903

Query: 315  LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
             WT MI GY       E+L LF +M+   + PD+  +V+++ ACA LGA+     +  YI
Sbjct: 904  TWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYI 963

Query: 375  DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
             + K + D+ +G A+IDM+ KCG VE A+ +F  M  K+  +W+AMI     +G G K+L
Sbjct: 964  QRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKAL 1023

Query: 435  DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            D+F  MLR+ I+P+++T V +L AC+H G+V+EG  +F+ M   + +  +  HY C+VDL
Sbjct: 1024 DLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDL 1083

Query: 495  LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
            LGRAG L+EAL++I +M  + +  +WGA LGACR H+D  +AE AA  +LEL P N   Y
Sbjct: 1084 LGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHY 1143

Query: 555  VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
            +LL NIYA   RW++  ++R ++  R +KK PG + IE++   H+F  GD +HP++KEIY
Sbjct: 1144 ILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIY 1203

Query: 615  LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
              L  + + L+ VGY+PD + V  DV EE K   +Y HSEKLA+AFGLI++     IRI+
Sbjct: 1204 EMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRII 1263

Query: 675  KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            KNLR+C DCH   KLVS +  R +IVRD  RFHHFK G+CSC DYW
Sbjct: 1264 KNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/563 (38%), Positives = 323/563 (57%), Gaps = 34/563 (6%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           +++H      G   ++ V N LI  Y     +D A G+FD     D V+W+ M  G+ +V
Sbjct: 79  RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 138

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
             +      F E+ R G  P + T+  V+ AC  LK+L +G+  H  V +  +  +  + 
Sbjct: 139 GDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVC 198

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
            AL DMY  C E                               ++ AR  FD+M ERD V
Sbjct: 199 AALVDMYVKCRE-------------------------------IEDARFLFDKMQERDLV 227

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            WT MI GY    +  E+L LF +M+   + PD+  +V+++ ACA LGA+     +  YI
Sbjct: 228 TWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYI 287

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            + K + D+ +G A+IDMY KCG VE A+ +F  M  K+  +W+AMI     +G G K+L
Sbjct: 288 QRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKAL 347

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           D+F  ML + ++PD++T   +L AC+H G+V+EG  +F+ M   + +  +  HY C+VDL
Sbjct: 348 DLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDL 407

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L+EAL++IK+M ++ +  +WGA LGACR H+D  +AE AA  +LEL   N   Y
Sbjct: 408 LGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHY 467

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL NIYA   RW++  ++R ++  R +KKTPG + IE++   H+F  GD +HP++KEIY
Sbjct: 468 VLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIY 527

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L  +++ L+ VGY+PD + V  DV EE K   +Y HSEKLA+AFGLI++     IRI+
Sbjct: 528 EMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRII 587

Query: 675 KNLR---MCVDCHRMAKLVSMVY 694
           KNLR   + ++ H  + +V++VY
Sbjct: 588 KNLREKKLYLELHVHSSIVNLVY 610



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/405 (30%), Positives = 210/405 (51%), Gaps = 36/405 (8%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           IS +  C ++ Q++Q+H+Q    G+L N  V NKL+ F    +  +  A  +F  +    
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRA-LDDAYGLFDGMCVRD 124

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-VEFGKELH 138
              W+ M+ G++++  + N    + ++++   RPDNYT PF+++   RD+  ++ G+ +H
Sbjct: 125 SVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA-CRDLKNLQMGRLIH 183

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
             V KFG D   FV  AL+  Y  C E++ AR +FD   + D+VTW  M  GY    + +
Sbjct: 184 HIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKAN 243

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E+  LF +M  +GV+P  V +V V+ ACAKL  +   +    Y++  K   ++IL  A+ 
Sbjct: 244 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMI 303

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA CG +  A EIF  ++ K+VISW+A++  Y   GQ                     
Sbjct: 304 DMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ--------------------- 342

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKN 377
                      R+AL LF  M +S + PD+ T+ S+L AC++ G +E G  +  +  +  
Sbjct: 343 ----------GRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDY 392

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            V+ D+     ++D+  + G +++A ++ + M + KD+  W A +
Sbjct: 393 SVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFL 437



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 201/397 (50%), Gaps = 36/397 (9%)

Query: 28   SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
            ++ Q++Q+H Q    G+L N  V NKLV F    +  +  A  +F  +       W+ M+
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRA-LDDAYGLFDGMCVRDSVSWSVMV 808

Query: 88   KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-VEFGKELHCHVLKFGF 146
             G++++  + N    + ++++   RPDNYT PF+++   RD+  ++ G+ +H  V KFG 
Sbjct: 809  GGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRA-CRDLKNLQMGRLIHHIVYKFGL 867

Query: 147  DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
            D   FV  AL+  Y  C E++ AR +FD   + D+VTW  M  GY      +E+  LF +
Sbjct: 868  DLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDK 927

Query: 207  MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
            M  +GV+P  V +V V+ ACAKL  +   +    Y++  K   ++IL  A+ DM+A CG 
Sbjct: 928  MREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGC 987

Query: 267  MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
            +  A EIF  ++ K+VISW+A++  Y   GQ                             
Sbjct: 988  VESAREIFDRMEEKNVISWSAMIAAYGYHGQ----------------------------- 1018

Query: 327  NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFV 385
               R+AL LF  M  S I P++ T+VS+L AC++ G +E G  +     +   V+ D+  
Sbjct: 1019 --GRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKH 1076

Query: 386  GNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
               ++D+  + G +++A ++   M   KD+  W A +
Sbjct: 1077 YTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFL 1113



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 142/348 (40%), Gaps = 46/348 (13%)

Query: 23   IETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPR 77
            I  C  +  L+    IH    K GL  +  V   LV     C E  D ++   +F K+  
Sbjct: 843  IRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARF---LFDKMXE 899

Query: 78   PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
              +  W  MI GY+   +    ++++  M +  V PD      ++    +  A+   + +
Sbjct: 900  RDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTI 959

Query: 138  HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
              ++ +  F   V +  A+I  +  CG V+ AR IFD   + +V++W+AM + Y    Q 
Sbjct: 960  DDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQG 1019

Query: 198  DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
             +   LF  M R G+LP  +T+V +L AC+    ++ G R    + E   V         
Sbjct: 1020 RKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSV--------- 1070

Query: 258  TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP-ERDYVLW 316
                                   DV  +T +V      G++D A +    M  E+D  LW
Sbjct: 1071 ---------------------RXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLW 1109

Query: 317  TAMIDGYLRVNR----FREALTLFREMQTSNIRPDEFTIVSILTACAN 360
             A + G  R ++      +A T   E+Q  N  P  + ++S + A A 
Sbjct: 1110 GAFL-GACRTHKDVXLAEKAATSLLELQPQN--PGHYILLSNIYANAG 1154


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/564 (38%), Positives = 345/564 (61%)

Query: 29   MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
            M  +K++H+  I  GL       +K++      + D+ +A KVF +I  P+  LWN +I+
Sbjct: 466  MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIR 525

Query: 89   GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
            G ++ D+  + +  Y       + PDN TFPF+LK   R  A+  G+++H H+ K G  S
Sbjct: 526  GLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 585

Query: 149  SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
             +FV N+LI  Y  CG +  AR +FD     DVV+WN++  GY +  +F +   LF  M+
Sbjct: 586  DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 645

Query: 209  RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
             +GV    VT++ V+SAC +L D  +     RY+++  I  ++ L N L D +   G++ 
Sbjct: 646  NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 705

Query: 269  FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
             A ++F N+K +++++  A++  Y     +  AR+ FDQ+P++D + W++MI GY + N 
Sbjct: 706  SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 765

Query: 329  FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
            F +AL +FR+MQ + ++PD   I S++++CA+LGAL+LG+WV  Y+ +N +K D  + N+
Sbjct: 766  FSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENS 825

Query: 389  LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
            LIDMY KCG  ++A +VF+EM  KD  +W ++I+GLA NG   +SL++F  ML     P+
Sbjct: 826  LIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPN 885

Query: 449  EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             VT++GVL AC +  +V+EG ++F  M   + +EP   HYGC+VDLLGRAG L +AL  I
Sbjct: 886  GVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFI 945

Query: 509  KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
              MP+ P+ +VW  LLG+C  H D  +AE+  K++ EL+P N   Y LL N YA+ +RW 
Sbjct: 946  TEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWS 1005

Query: 569  NFRELRQMILDRGIKKTPGCSMIE 592
                +RQ + D  ++K+PGCS +E
Sbjct: 1006 EAMNVRQCMADTDVRKSPGCSAVE 1029



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 136/403 (33%), Positives = 228/403 (56%), Gaps = 2/403 (0%)

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           W+A+   Y       +  +LF    R      +      L ACA L       + H  V 
Sbjct: 58  WHALLKAYSHGPHPQDALQLF-RHARWHAADDTYAFTFALKACAGLGWPRCCMQLHGLVV 116

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
                    +  AL ++Y  CG +  +   F  +  K+ +SW  ++TG+   G+V+ AR 
Sbjct: 117 RKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARL 176

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
            F++MP R+ V W+ MIDGY R  R  EA+ LFR M    I P E T+++++ A +N+G 
Sbjct: 177 LFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGK 236

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIV 422
           + +GE +  Y +K  +  D+ VGN+LID+Y K G ++ + RVF EML R++  +WT++I 
Sbjct: 237 ILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIIS 296

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A++G   K++++F+ M RA I P+ +T++ VL AC+H G+V++G  +F  M  ++ I 
Sbjct: 297 GFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNIN 356

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P+  H+GC++D+LGRAG L EA ++I++ P++ N+ VW  LLG C  + + EM E   K+
Sbjct: 357 PDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKK 416

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           IL L+ +    +V+L N+     R+ +   +R+++  R   K+
Sbjct: 417 ILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKS 459



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 217/465 (46%), Gaps = 82/465 (17%)

Query: 10  PSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           P  LT   P I  ++ C  ++ L   +Q+H+   KLGLL++  V N L+    +  G++ 
Sbjct: 550 PDNLT--FPFI--LKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAA-CGNLC 604

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           YA  VF ++    V  WN++I GYS+ +  K+ + ++  M    V+ D  T   ++   T
Sbjct: 605 YARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACT 664

Query: 127 R---------------DIAVE------------FGKELHCHVLKFGFDS----SVFVQNA 155
           R               D  +E            FG+       +  F +    ++   NA
Sbjct: 665 RLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNA 724

Query: 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
           +I+ Y    ++  AR IFD   K D+++W++M SGY +   F +  ++F +M+R  V P 
Sbjct: 725 MIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPD 784

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           ++ I  V+S+CA L  LD+GK  H YV+   I  + I+EN+L DMY  CG    AL++F 
Sbjct: 785 AIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFK 844

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
            +K KD +SW +I+ G  N G        F+                       +E+L L
Sbjct: 845 EMKEKDTLSWNSIIIGLANNG--------FE-----------------------KESLNL 873

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELG-----EWVKTYIDKNKVKNDIFVGNALI 390
           F+ M T   RP+  T + +L ACAN   +E G        + Y  + ++K+       ++
Sbjct: 874 FQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHY----GCVV 929

Query: 391 DMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSL 434
           D+  + G +EKA R   EM +  D   W  ++   + N HGD ++
Sbjct: 930 DLLGRAGQLEKALRFITEMPIDPDPVVWRILLG--SCNTHGDVAI 972



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 187/435 (42%), Gaps = 97/435 (22%)

Query: 8   SPPSTLTQETPLISPI-ETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           SPP        L++ + E  +   QL QIHSQ I                          
Sbjct: 13  SPPVDAIAARRLVALLLEHQDRRRQLLQIHSQLI-------------------------- 46

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
            A +VF + P P    W+ ++K YS    H    L      +     D Y F F LK   
Sbjct: 47  -AHQVFDRRPTP----WHALLKAYSH-GPHPQDALQLFRHARWHAADDTYAFTFALKACA 100

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC----------------------- 163
                    +LH  V++ GF+   +V  AL++ Y LC                       
Sbjct: 101 GLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNV 160

Query: 164 --------GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
                   GEV+ AR +F+     +VV+W+ M  GY R  +  E   LF  M  +G+ P+
Sbjct: 161 VITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPS 220

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
            +T++ V+ A + +  + +G+  H Y ++  +V ++ + N+L D+YA  G +  +L +F 
Sbjct: 221 EITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFD 280

Query: 276 N-IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
             +  ++++SWT+I++G+   G                           L V    +A+ 
Sbjct: 281 EMLDRRNLVSWTSIISGFAMHG---------------------------LSV----KAVE 309

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMY 393
           LF +M+ + IRP+  T +S+L AC++ G +E G  + K+ I +  +  D+     +IDM 
Sbjct: 310 LFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDML 369

Query: 394 CKCGDVEKAQRVFRE 408
            + G + +A+++ R+
Sbjct: 370 GRAGRLREAEQIIRD 384



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 111/518 (21%), Positives = 226/518 (43%), Gaps = 27/518 (5%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G+++YA  +F ++P  +V  W+ MI GY+R       V ++  M+   + P   T   ++
Sbjct: 169 GEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVV 228

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDV 181
              +    +  G+ LH +  K G    V V N+LI  Y   G +  +  +FD +  + ++
Sbjct: 229 PALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNL 288

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR- 240
           V+W ++ SG+       +  +LF +M R G+ P  +T + VL AC+    ++ G    + 
Sbjct: 289 VSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKS 348

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVD 299
            + E  I P++     + DM    G +  A +I  +   + +   W  ++      G+V+
Sbjct: 349 MIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVE 408

Query: 300 MARQYFDQM--PER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
           M  +   ++   ER    D+V+ + M+     + RF +A  + + +   N     F IV 
Sbjct: 409 MGERTMKKILALEREFGGDFVVLSNMLT---ELRRFSDAEIVRKLVDQRNSVKSFFNIVR 465

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG-DVEKAQRVFREMLRK 412
                     +E  + +  Y   + + N  +  + ++  Y     D+  A +VF ++   
Sbjct: 466 ----------MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAP 515

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
             F W  +I GLA +     ++  + +     ++PD +T+  +L AC     ++EG +  
Sbjct: 516 TTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMH 575

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
             +T + G+  +      ++ L    G+L  A  V   M +K + + W +L+  C   + 
Sbjct: 576 NHIT-KLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK-DVVSWNSLI--CGYSQC 631

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
               ++ A   L  +   +A  V +  + +AC R  ++
Sbjct: 632 NRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDY 669


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/665 (37%), Positives = 371/665 (55%), Gaps = 56/665 (8%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           + G +  A KVF K+P  +V  W +M++GY +        L++  M + +V     ++  
Sbjct: 90  KNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV----VSWTV 145

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFD----SSVFVQNALISTYCLCGEVDMARGIFDVS 176
           +L G   D  V+  + L        FD      V     +I   C  G +  AR IFD  
Sbjct: 146 MLGGLIEDGRVDEARRL--------FDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEM 197

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
            + +VV W +M SGY    + D  RKLF  M  K                          
Sbjct: 198 PQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK-------------------------- 231

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
                        N +   A+   Y   G +  A E+F  +  K V +   ++ G+   G
Sbjct: 232 -------------NEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNG 278

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
           +V  AR  FDQM E+D   W+A+I  Y R     EAL LF  MQ   +RP+  +I+SIL+
Sbjct: 279 EVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILS 338

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
            C +L +L+ G  V + + ++    DI+V + LI MY KCGD+   +RVF     KD   
Sbjct: 339 VCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVM 398

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W ++I G A +G G+K+L++F +M  +   PDE+T++GVLSAC +TG V EG E F  M 
Sbjct: 399 WNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMK 458

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
            ++ ++    HY CMVDLLGRAG LNEA+ +I+NMP++ ++IVWGALL ACR H++ ++A
Sbjct: 459 SKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLA 518

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           E+AAK++L+L+P +   Y+LL N+YA+ +RW +  ELR+ +  R + K+PGCS IE++  
Sbjct: 519 EIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNK 578

Query: 597 VHEFV-AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
           VH F   G  SHP+ + I  KL+++ + L+  GY PD S V  DV EEDK  ++  HSEK
Sbjct: 579 VHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEK 638

Query: 656 LAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715
           +A+A+GL+    G  IR++KNLR+C DCH   KL++ V  RE+I+RD  RFHHFK G CS
Sbjct: 639 MAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCS 698

Query: 716 CKDYW 720
           C+D+W
Sbjct: 699 CRDFW 703



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 172/417 (41%), Gaps = 86/417 (20%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G +  A  +F  +   +V  WN ++ GY           ++      D  P+  T  +  
Sbjct: 30  GQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLF------DKMPERNTISW-- 81

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
                                          N L+S Y   G +  AR +FD   + +VV
Sbjct: 82  -------------------------------NGLVSGYVKNGMISEARKVFDKMPERNVV 110

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +W +M  GY +    DE   LF  M  K V    V+  ++L    +   +D  +R    +
Sbjct: 111 SWTSMVRGYVQEGLIDEAELLFWRMPEKNV----VSWTVMLGGLIEDGRVDEARRLFDMI 166

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
                V +++    +     + G +  A EIF  +  ++V++WT++++GY    +VD+AR
Sbjct: 167 P----VKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVAR 222

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
           + F+ MP+++ V WTAM+ GY R  R  EA  LF+ M    ++P        + AC    
Sbjct: 223 KLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMP---VKP--------VAAC---- 267

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
                                   N +I  +   G+V KA+ VF +M  KD  TW+A+I 
Sbjct: 268 ------------------------NGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIK 303

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
                G   ++L +FS M R  + P+  + + +LS C     +D GR+  + +   H
Sbjct: 304 IYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSH 360



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 155/381 (40%), Gaps = 92/381 (24%)

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           F SS  +    IS +   G++D AR IFD      V +WNA+ +GY   K+  E +KLF 
Sbjct: 12  FSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFD 71

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           +M  +                                       N I  N L   Y   G
Sbjct: 72  KMPER---------------------------------------NTISWNGLVSGYVKNG 92

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            +  A ++F  +  ++V+SWT++V GY+  G +D A   F +MPE++ V WT M+ G + 
Sbjct: 93  MISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIE 152

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
             R  EA  LF                                      D   VK D+  
Sbjct: 153 DGRVDEARRLF--------------------------------------DMIPVK-DVVA 173

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
              +I   C  G + +A+ +F EM +++   WT+MI G A+N   D +  +F       +
Sbjct: 174 STNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLF------EV 227

Query: 446 IPD--EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
           +PD  EVT+  +L   T +G ++E  E F  M ++    P  A  G M+   G  G + +
Sbjct: 228 MPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVK----PVAACNG-MIMGFGLNGEVGK 282

Query: 504 ALEVIKNMPMKPNSIVWGALL 524
           A  V   M  K +   W AL+
Sbjct: 283 ARWVFDQMKEKDDG-TWSALI 302



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 19/266 (7%)

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           +A  G++  A  IF ++++K V SW AIV GY +  +   A++ FD+MPER+ + W  ++
Sbjct: 26  FARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLV 85

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI-DKNKV 379
            GY++     EA  +F +M   N+     +  S++      G ++  E +   + +KN V
Sbjct: 86  SGYVKNGMISEARKVFDKMPERNV----VSWTSMVRGYVQEGLIDEAELLFWRMPEKNVV 141

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
              + +G  + D     G V++A+R+F  +  KD    T MI GL   G   ++ ++F +
Sbjct: 142 SWTVMLGGLIED-----GRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDE 196

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M + ++    V +  ++S       VD  R+ F  M      + NE  +  M+    R+G
Sbjct: 197 MPQRNV----VAWTSMISGYAMNNKVDVARKLFEVMP-----DKNEVTWTAMLKGYTRSG 247

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLG 525
            +NEA E+ K MP+KP +   G ++G
Sbjct: 248 RINEAAELFKAMPVKPVAACNGMIMG 273



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 94/214 (43%), Gaps = 14/214 (6%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           +IS +  C S+  L   +Q+HSQ ++     +  V + L+T    + GD+    +VF + 
Sbjct: 333 IISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYI-KCGDLVTGKRVFDRF 391

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
               + +WN++I GY++    +  + ++ +M  S   PD  TF  +L        V+ G 
Sbjct: 392 SSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGL 451

Query: 136 EL-HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKR 193
           E+      K+  D        ++      G+++ A  + + +  + D + W A+ S  + 
Sbjct: 452 EIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRT 511

Query: 194 VKQFDETRKLFGEMERKGVL---PTSVTIVLVLS 224
            K  D       E+  K +L   P+S    ++LS
Sbjct: 512 HKNLD-----LAEIAAKKLLQLEPSSAGPYILLS 540


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/689 (35%), Positives = 375/689 (54%), Gaps = 33/689 (4%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            KQIH   ++ GL    +V N L+     + G +  A  VF ++    +  WNTMI G + 
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYV-KTGSVSRARTVFWQMNEVDLVSWNTMISGCAL 984

Query: 93   IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVF 151
                +  V +++D+L+  + PD +T   +L+  +          ++H   +K G     F
Sbjct: 985  SGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSF 1044

Query: 152  VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
            V   LI  Y   G+++ A  +F      D+ +WNAM  GY     F +  +L+  M+  G
Sbjct: 1045 VSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESG 1104

Query: 212  VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
                 +T+     A   L  L  GK+    V +     +L + + + DMY  CGEM    
Sbjct: 1105 ERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEM---- 1160

Query: 272  EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
                                       + AR+ F+++P  D V WT MI G +   +   
Sbjct: 1161 ---------------------------ESARRIFNEIPSPDDVAWTTMISGCVENGQEEH 1193

Query: 332  ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
            AL  +  M+ S ++PDE+T  +++ AC+ L ALE G  +     K     D FV  +L+D
Sbjct: 1194 ALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVD 1253

Query: 392  MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
            MY KCG++E A+ +F+        +W AMIVGLA +G+ +++L  F +M    + PD VT
Sbjct: 1254 MYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVT 1313

Query: 452  YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
            ++GVLSAC+H+G+V E  E F  M   +GIEP   HY C+VD L RAG + EA +VI +M
Sbjct: 1314 FIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSM 1373

Query: 512  PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
            P + ++ ++  LL ACRV  D E  +  A+++L L+P + A YVLL N+YAA N+W+N  
Sbjct: 1374 PFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVA 1433

Query: 572  ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
              R M+    +KK PG S +++   VH FVAGD+SH +T  IY K++ +   ++  GY+P
Sbjct: 1434 SARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLP 1493

Query: 632  DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
            D     +DV EEDKE ++Y HSEKLA+A+GL+ + P  T+R++KNLR+C DCH   K +S
Sbjct: 1494 DTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYIS 1553

Query: 692  MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             V++REV++RD  RFHHF+ G CSC DYW
Sbjct: 1554 KVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 154/664 (23%), Positives = 266/664 (40%), Gaps = 101/664 (15%)

Query: 9    PPSTLTQETP----LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
            PP+ L    P    ++        +   K+ H++ +  G   +  + N L+T   S+ G 
Sbjct: 618  PPAHLIHSIPQWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMY-SKCGS 676

Query: 65   MKYACKVFRKIPRPS--VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
            +  A K+F   P  S  +  WN ++  ++  D  ++G  ++  + +S V    +T   + 
Sbjct: 677  LSSARKLFDTTPDTSRDLVTWNAILSAHA--DKARDGFHLFRLLRRSFVSATRHTLAPVF 734

Query: 123  KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
            K      +    + LH + +K G    VFV  AL++ Y   G +  AR +FD     DVV
Sbjct: 735  KMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVV 794

Query: 183  TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
             WN M   Y       E   LF E  R G+ P  VT+  +                 R V
Sbjct: 795  LWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLA----------------RVV 838

Query: 243  KECKIVPNLILENALTDMYAACGEMGFALEIF---GNIKNKDVISWTAIVTGYINRGQVD 299
            K  + V    LE  L  + A      +  ++F    +    DVI+W   ++ ++ RG+  
Sbjct: 839  KSKQNV----LEWQLKQLKA------YGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGET- 887

Query: 300  MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
                            W              EA+  F +M  S +  D  T V +L+  A
Sbjct: 888  ----------------W--------------EAVDCFVDMINSRVACDGLTFVVMLSVVA 917

Query: 360  NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
             L  LELG+ +   + ++ +   + VGN LI+MY K G V +A+ VF +M   D  +W  
Sbjct: 918  GLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNT 977

Query: 420  MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
            MI G A++G  + S+ MF  +LR  ++PD+ T   VL AC+  G             ++ 
Sbjct: 978  MISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKA 1037

Query: 480  GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
            G+  +      ++D+  ++G + EA  +  N     +   W A++    V  D    +  
Sbjct: 1038 GVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQD-GFDLASWNAMMHGYIVSGD--FPKAL 1094

Query: 540  AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM---ILDRGIKKTPGCSMIEMNGV 596
               IL  +    A  + L N   A       ++ +Q+   ++ RG        +  ++GV
Sbjct: 1095 RLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFN----LDLFVISGV 1150

Query: 597  VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF--------LDVGEEDKERA 648
            +              ++YLK  EM S  +    +P   +V         ++ G+E+    
Sbjct: 1151 L--------------DMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALF 1196

Query: 649  VYQH 652
             Y H
Sbjct: 1197 TYHH 1200



 Score = 47.0 bits (110), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 7/108 (6%)

Query: 11   STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
            +TL +   L++ +E      Q +QIH+ T+KL    +P V   LV    ++ G+++ A  
Sbjct: 1214 ATLVKACSLLTALE------QGRQIHANTVKLNCAFDPFVMTSLVDM-YAKCGNIEDARG 1266

Query: 71   VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
            +F++     +  WN MI G ++  + +  +  + +M    V PD  TF
Sbjct: 1267 LFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTF 1314


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/688 (36%), Positives = 378/688 (54%), Gaps = 33/688 (4%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           +IH   +KLGL  +  V N LV    S+ G +  A  +F K  R +   WNTMI G    
Sbjct: 155 RIHGLAVKLGLSEDVRVNNSLVDMY-SKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTK 213

Query: 94  DSHKNGVLIYLDM-LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                   ++ +M ++ D+  +  T   +L        +   KELH + ++ GF     V
Sbjct: 214 GYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELV 273

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            N  ++ Y  CG +  A  +F       V +WNA+  G  +     +   L+ +M   G+
Sbjct: 274 ANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGL 333

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
           +P   TI  +L A A LK L  GK  H +V                        +   LE
Sbjct: 334 VPDWFTIGSLLLASAHLKSLRYGKEVHGFV------------------------LRHGLE 369

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           I       D     ++++ YI+ G+   AR  FD M E+  V W AMI GY +     +A
Sbjct: 370 I-------DSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDA 422

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L LFR++ +   +P +  +VS+L AC+   AL LG+    Y  K  +  D+FV  + IDM
Sbjct: 423 LILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDM 482

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y K G +++++ VF  +  KD  +W A+I    ++G G++S+++F +M +   +PD  T+
Sbjct: 483 YAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTF 542

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           +G+L+ C+H G+V+EG +YF +M   HGIEP   HY C++D+LGRAG L++AL ++  MP
Sbjct: 543 IGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMP 602

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            +P+S VW +LL  CR   + E+ ++ A+++LEL+P N   YV L N+YA   RWD+ R 
Sbjct: 603 EQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRR 662

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +RQMI D G++K  GCS IE+ G VH FVAGD   PQ+KE+ +   ++   +  +GY P+
Sbjct: 663 VRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPN 722

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            S V  DV EE K   +  HSEKLA+ FGL+++  G T+RI KNLR+CVDCH  +K +S 
Sbjct: 723 TSAVLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSE 782

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           V  RE+I+RD  RFHHFK G CSC DYW
Sbjct: 783 VTGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 235/504 (46%), Gaps = 39/504 (7%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IH   IK+GLL +  V N L+     + G +  A KVF  +P  ++  WN++I G+S   
Sbjct: 53  IHGMVIKMGLLLDVFVGNALIAMY-GKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENG 111

Query: 95  SHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
             K+   + ++M+  +  + PD  T   +L    R++ V+ G  +H   +K G    V V
Sbjct: 112 FSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRV 171

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME-RKG 211
            N+L+  Y  CG +  A+ +FD + + + V+WN M  G        E   LF EM+ ++ 
Sbjct: 172 NNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQED 231

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           +    VT++ +L AC ++  L   K  H Y        + ++ N     YA CG +  A 
Sbjct: 232 IEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAE 291

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            +F +++ K V SW A++ G    G            P                    R+
Sbjct: 292 RVFYSMETKTVNSWNALIGGCAQNGD-----------P--------------------RK 320

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL L+ +M  S + PD FTI S+L A A+L +L  G+ V  ++ ++ ++ D F+G +L+ 
Sbjct: 321 ALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLS 380

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           +Y  CG+   A+ +F  M  K   +W AMI G + NG  + +L +F +++     P ++ 
Sbjct: 381 LYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIA 440

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MVDLLGRAGHLNEALEVIKN 510
            V VL AC+    +  G+E          +   +    C  +D+  ++G + E+  V   
Sbjct: 441 VVSVLGACSQQSALRLGKE--THCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDG 498

Query: 511 MPMKPNSIVWGALLGACRVHRDAE 534
           +  K +   W A++ A  VH D E
Sbjct: 499 LKNK-DLASWNAIIAAYGVHGDGE 521



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 217/468 (46%), Gaps = 42/468 (8%)

Query: 109 SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM 168
           ++   DN+TFP ++K  T  +    G+ +H  V+K G    VFV NALI+ Y   G VD 
Sbjct: 25  TEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDA 84

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM--ERKGVLPTSVTIVLVLSAC 226
           A  +F      ++V+WN++ SG+       +   +  EM    +G+LP   T+V VL  C
Sbjct: 85  AVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVC 144

Query: 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWT 286
           A+  D+ +G R H    +  +  ++ + N+L DMY+ CG +  A  +F     K+ +SW 
Sbjct: 145 AREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWN 204

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIR 345
            ++ G   +G                Y+                EA  LFREMQ   +I 
Sbjct: 205 TMIGGLCTKG----------------YIF---------------EAFNLFREMQMQEDIE 233

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
            +E T+++IL AC  +  L   + +  Y  ++  + D  V N  +  Y KCG +  A+RV
Sbjct: 234 VNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERV 293

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F  M  K   +W A+I G A NG   K+L+++ QM  + ++PD  T   +L A  H   +
Sbjct: 294 FYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSL 353

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
             G+E      ++HG+E +      ++ L    G  + A  +   M  K +S+ W A++ 
Sbjct: 354 RYGKEVHG-FVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEK-SSVSWNAMIS 411

Query: 526 ACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNRWDNFR 571
               +   E A +  ++++     P + AV  +L     AC++    R
Sbjct: 412 GYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVL----GACSQQSALR 455


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/690 (35%), Positives = 379/690 (54%), Gaps = 34/690 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +++H+  ++ G   +    N LV    S+ GD+  A  VF K+P+  V  WN  I G   
Sbjct: 222 RKVHAMVVRTGYDKDVFTANALVDMY-SKLGDIHMAALVFGKVPKTDVVSWNAFISGCVL 280

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG--KELHCHVLKFGFDSSV 150
               ++ + + L M  S + P+ +T   +LK      A  F   +++H  ++K   DS  
Sbjct: 281 HGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDD 340

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
           ++  AL+  Y   G +D AR +F+   + D++ WNA+ SG        E+  LF  M ++
Sbjct: 341 YIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKE 400

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G      T+  VL + A L+ +    + H   ++   + +  + N L D Y  C  + +A
Sbjct: 401 GSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYA 460

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            ++F    + ++I++T+                               MI    + +   
Sbjct: 461 NKVFEEHSSDNIIAFTS-------------------------------MITALSQCDHGE 489

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           +A+ LF EM    + PD F + S+L ACA+L A E G+ V  ++ K K   D+F GNAL+
Sbjct: 490 DAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALV 549

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
             Y KCG +E A   F  +  K   +W+AMI GLA +GHG ++LD+F +M+   I P+ +
Sbjct: 550 YTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHI 609

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T   VL AC H G+VDE + YF+ M    GI+  E HY CM+DLLGRAG L++A+E++ +
Sbjct: 610 TLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNS 669

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MP + N+ VWGALL A RVHRD E+ ++AA+++  L+P+    +VLL N YA+   WD  
Sbjct: 670 MPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEV 729

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
            ++R+++ D  +KK P  S +E+   VH F+ GDKSHP+ ++IY KL+E+   +   GY+
Sbjct: 730 AKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYV 789

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           P++     DV + +KE  +  HSE+LA+AF LIS+  G  IR+ KNLR+C DCH   K +
Sbjct: 790 PNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFI 849

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S +  RE+I+RD  RFHHF  G+CSC DYW
Sbjct: 850 SKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 146/549 (26%), Positives = 244/549 (44%), Gaps = 77/549 (14%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRK 74
           +PL++     +S+     IH+  +K GLL     +N L++F   C   G  +   +VF +
Sbjct: 8   SPLLTRYAATQSLFLGAHIHAHLLKSGLLH--AFRNHLLSFYSKCRLPGSAR---RVFDE 62

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
            P P    W++++  YS     +  +  +  M    VR + +  P +LK          G
Sbjct: 63  TPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPD---AGLG 119

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD-DVVTWNAMFSGYKR 193
            ++H   +  G    +FV NAL++ Y   G VD AR +FD + +D + V+WN M S + +
Sbjct: 120 VQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVK 179

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
             +  +  +LFGEM   GV P       V++AC   +DL+ G++ H  V       ++  
Sbjct: 180 NDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFT 239

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            NAL DMY+  G++  A  +FG +   DV+SW A ++G +  G         DQ      
Sbjct: 240 ANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGH--------DQ------ 285

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL--TACANLGALELGEWVK 371
                             AL L  +M++S + P+ FT+ SIL   A A  GA  LG  + 
Sbjct: 286 -----------------HALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIH 328

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            ++ K    +D ++G AL+DMY K G ++ A++VF  + RKD   W A+I G +  G   
Sbjct: 329 GFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHG 388

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVL---------SACTHTGMVDEGREYFADMTIQHGI- 481
           +SL +F +M +     +  T   VL         S  T    + E   + +D  + +G+ 
Sbjct: 389 ESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLI 448

Query: 482 --------------------EPNEAHYGCMVDLLGRAGHLNEALEVIKNM---PMKPNSI 518
                                 N   +  M+  L +  H  +A+++   M    ++P+  
Sbjct: 449 DSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPF 508

Query: 519 VWGALLGAC 527
           V  +LL AC
Sbjct: 509 VLSSLLNAC 517


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 357/593 (60%), Gaps = 9/593 (1%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM---ARGIFDVSYKDDVVTWNAMFSG 190
            K+LH H+ +     S +V   L+        + +      +F   +  +   ++A+   
Sbjct: 27  AKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSALIRA 86

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y R   F  + +L+  M    V P S T   + S    LK+  +G + H +      V +
Sbjct: 87  YARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSL---LKNPSLGSQLHLHAFLFGFVND 143

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           L + N +  MY   G +  A ++F  + ++DV++WT ++  Y   G +D A + F  +P 
Sbjct: 144 LYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPV 203

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           +D V WT+M+ GY +    ++AL  FR+M+ + +  DE T+V  ++ACA LG     +W+
Sbjct: 204 KDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWI 263

Query: 371 KTYIDKNKVKN--DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           +   + ++  +  ++FVG+ALIDMY KCG+VE+A  VF+ M   + F++++MIVG A++G
Sbjct: 264 REIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHG 323

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
               ++ +F +ML   I P+ VT+VG+ +AC+H GMV++G++ F  M   +G+ P   HY
Sbjct: 324 RARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHY 383

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
            CM DLLGRAGHL +AL++++ MPM+PN  VWGALLGA  +H + ++AE+A++ + EL+P
Sbjct: 384 ACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEP 443

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM-NGVVHEFVAGDKSH 607
           DN   Y+LL   YA   +WD+   +R+++ ++ ++K PGCS +E  NG++HEF AGD  H
Sbjct: 444 DNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGDVKH 503

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P+  EI   LD++   LK  GY P ++ V  D+ +E K   +  HSEKLA+A+GL+S+  
Sbjct: 504 PEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLSTDA 563

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G TI+I+KNLR+C DCH +    S +  R++IVRD  RFHHF +G+CSC ++W
Sbjct: 564 GSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 191/443 (43%), Gaps = 71/443 (16%)

Query: 26  CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS--EKGDMKYACKVFRKIPRPSVCLW 83
           C +++  KQ+H+   +  L  +  V   L+ F  +        Y   +F ++  P+  L+
Sbjct: 21  CTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLY 80

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           + +I+ Y+R     + + +Y  ML ++V P ++TF  L   F+       G +LH H   
Sbjct: 81  SALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSAL---FSLLKNPSLGSQLHLHAFL 137

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFD--------------VSYK----------- 178
           FGF + ++V N +I  Y   G +D AR +FD              V+Y            
Sbjct: 138 FGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACEL 197

Query: 179 ------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
                  D+V W +M +GY +     +  + F +M   GV+   +T+V  +SACA+L   
Sbjct: 198 FVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVS 257

Query: 233 DVGKRAHRYVKECKI--VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
                     +  +     N+ + +AL DMY+ CG +  A  +F  +K  +V S+++++ 
Sbjct: 258 GYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIV 317

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
           G+   G                               R R A+ LF EM  + I+P+  T
Sbjct: 318 GFAVHG-------------------------------RARSAIKLFYEMLENGIKPNHVT 346

Query: 351 IVSILTACANLGALELGEWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
            V + TAC++ G +E G+ +   + +   V         + D+  + G +EKA ++ + M
Sbjct: 347 FVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTM 406

Query: 410 -LRKDKFTWTAMIVGLAINGHGD 431
            +  +   W A++    I+G+ D
Sbjct: 407 PMEPNGGVWGALLGASHIHGNPD 429


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/776 (33%), Positives = 406/776 (52%), Gaps = 75/776 (9%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            ++ ++ C S   +   +++H      G   N  V   L+    ++ G +  A +VF  +
Sbjct: 8   FVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMY-AQCGSVPEAQQVFEIL 66

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
            R  V  W  MI  Y +   +   + ++  M + DV P   T+  +L       +++ G 
Sbjct: 67  ERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGM 126

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           E+H  +L+ GF+  VFV  ALI+ Y  CG V  A   F      DVV+W AM +   +  
Sbjct: 127 EIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHD 186

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           QF   R L+  M+  GV+P  +T+  V +A      L  GK  +  V    +  ++ + N
Sbjct: 187 QFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMN 246

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE----- 310
           +  +M+   G +G A  +F ++ ++DV++W  ++T Y+       A + F ++ +     
Sbjct: 247 SAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKA 306

Query: 311 ----------------------------------RDYVLWTAMIDGYLRV---------- 326
                                             RD V+ TA++  Y R           
Sbjct: 307 NDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIF 366

Query: 327 --------------------NRFR-EALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
                               N FR EAL LF+EMQ    RP   T+V++L  CA+L AL+
Sbjct: 367 VDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQ 426

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            G  + ++I +N  + ++ V  ALI+MY KCG + +A+ VF +M ++D   W +M+   A
Sbjct: 427 KGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYA 486

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            +G+ D++L +F+QM       D V++V VLSA +H+G V +G +YF  M     I P  
Sbjct: 487 QHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTP 546

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMP-MKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             YGC+VDLLGRAG + EA++++  +    P+ I+W  LLGACR H   + A+ AA+Q+L
Sbjct: 547 ELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVL 606

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           E DP +   YV+L N+YAA   WD    +R+++  RG+KK PG S IE+   VHEF+ GD
Sbjct: 607 ERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGD 666

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           +SHP+   IY +LD + S+++  GY+PD   +  DV +E KE  ++ HSE+LA+AFGL+S
Sbjct: 667 RSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMS 726

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + PG  +R++KNLR+C DCH   K +S +  RE++VRD  RFH+FK G CSCKDYW
Sbjct: 727 TPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 196/409 (47%), Gaps = 33/409 (8%)

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
           +PD   F  LL+  +    V+ G+ +H HV   GF+ +  V   LI  Y  CG V  A+ 
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +F++  + DV  W  M   Y +   +D    +F +M+ + V+PT VT V +L+ACA  + 
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           L  G   H  + +     ++ +  AL +MY  CG +  A + F  ++++DV+SWTA++  
Sbjct: 122 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
            +   Q  +AR             W                  L+R MQ   + P++ T+
Sbjct: 182 CVQHDQFALAR-------------W------------------LYRRMQLDGVVPNKITL 210

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
            ++  A  +   L  G+++ + +    +++D+ V N+ ++M+   G +  A+R+F +M+ 
Sbjct: 211 YTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVD 270

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           +D  TW  +I     N +  +++ +F ++ +  I  +++T+V +L+  T    + +G+  
Sbjct: 271 RDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGK-V 329

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
             ++  + G + +      ++ L GR     +A ++  +M  K + I W
Sbjct: 330 IHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSK-DVITW 377


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/615 (39%), Positives = 360/615 (58%), Gaps = 37/615 (6%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           M +  V  D  T+  L+K  +   AV+ GK +H H+   G++  +FV N L++ Y     
Sbjct: 46  MERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNL 105

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           ++ A  +FD   + +VV+W  M S Y   K  D+  K    M R+GV P   T   VL A
Sbjct: 106 LEEAEDLFDEMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGVRPNMFTYSSVLRA 164

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           C  L +L   ++ H                        CG +   LE        DV   
Sbjct: 165 CDGLPNL---RQLH------------------------CGIIKTGLE-------SDVFVR 190

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           +A++  Y     +D A   FD+MP RD V+W ++I G+ + +   EAL LF+ M+ +   
Sbjct: 191 SALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFL 250

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
            D+ T+ S+L AC  L  LELG  V  ++   K   D+ + NALIDMYCKCG +E A   
Sbjct: 251 ADQATLTSVLRACTGLALLELGRQVHVHV--LKFDQDLILNNALIDMYCKCGSLEDANSA 308

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F  M+ KD  +W+ M+ GLA NG+  ++L++F  M  +   P+ +T +GVL AC+H G+V
Sbjct: 309 FSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLV 368

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           ++G  YF  M    G++P   HYGC++DLLGRAG L+EA+++I  M  +P+S+ W  LLG
Sbjct: 369 EKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLG 428

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           ACRVHR+ ++A  AAK+I+EL+P++   Y+LL NIYA   RW++  E+R+ + +RGI+KT
Sbjct: 429 ACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKT 488

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
           PGCS IE++  +H F+ GD SHP+ +EI  +L+++   +  VGY+PD + V  D+  E K
Sbjct: 489 PGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQK 548

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           E ++  HSEKLA+ FGL++     T+RI KNLR+C DCH  AK+VS +  R +++RD  R
Sbjct: 549 EDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIR 608

Query: 706 FHHFKHGSCSCKDYW 720
           +HHF+ G CSC DYW
Sbjct: 609 YHHFQDGVCSCGDYW 623



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 178/378 (47%), Gaps = 50/378 (13%)

Query: 49  TVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK 108
           T+ N  V F   E+ +      +F ++P  +V  W TMI  YS   + K    + L M +
Sbjct: 95  TLLNMYVKFNLLEEAE-----DLFDEMPERNVVSWTTMISAYSNKLNDKALKCLIL-MFR 148

Query: 109 SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM 168
             VRP+ +T+  +L+       +   ++LHC ++K G +S VFV++ALI  Y    ++D 
Sbjct: 149 EGVRPNMFTYSSVLRACD---GLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDN 205

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           A G+FD     D+V WN++  G+ +    +E   LF  M+R G L    T+  VL AC  
Sbjct: 206 ALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTG 265

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           L  L++G++ H +V   K   +LIL NAL DMY  CG +  A   F  +  KDVISW+ +
Sbjct: 266 LALLELGRQVHVHV--LKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTM 323

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           V G    G                                 R+AL LF  M+ S  RP+ 
Sbjct: 324 VAGLAQNGYS-------------------------------RQALELFESMKESGSRPNY 352

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKCGDVEKAQR 404
            T++ +L AC++ G +E G +   Y    K    +  G      LID+  + G +++A +
Sbjct: 353 ITVLGVLFACSHAGLVEKGWY---YFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVK 409

Query: 405 VFREM-LRKDKFTWTAMI 421
           +  EM    D  TW  ++
Sbjct: 410 LIHEMECEPDSVTWRTLL 427



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 157/331 (47%), Gaps = 10/331 (3%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S +  C+ +  L+Q+H   IK GL ++  V++ L+    S+  D+  A  VF ++P   +
Sbjct: 160 SVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVY-SKWSDLDNALGVFDEMPTRDL 218

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            +WN++I G+++       + ++  M ++    D  T   +L+  T    +E G+++H H
Sbjct: 219 VVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVH 278

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           VLK  FD  + + NALI  YC CG ++ A   F    + DV++W+ M +G  +     + 
Sbjct: 279 VLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQA 336

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILENALTD 259
            +LF  M+  G  P  +T++ VL AC+    ++ G    R +K+   + P       L D
Sbjct: 337 LELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLID 396

Query: 260 MYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDM----ARQYFDQMPERDYV 314
           +    G +  A+++   ++   D ++W  ++        VD+    A++  +  PE D  
Sbjct: 397 LLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPE-DAG 455

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            +  + + Y    R+ +   + + M    IR
Sbjct: 456 TYILLSNIYANTQRWEDVAEVRKTMTNRGIR 486



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 6/208 (2%)

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
              A+     M+   +  D  T   ++  C+  GA++ G+ V  +I     +  +FV N 
Sbjct: 36  LHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNT 95

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           L++MY K   +E+A+ +F EM  ++  +WT MI   + N   DK+L     M R  + P+
Sbjct: 96  LLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPN 154

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             TY  VL AC   G+ +  + +     I+ G+E +      ++D+  +   L+ AL V 
Sbjct: 155 MFTYSSVLRAC--DGLPNLRQLHCG--IIKTGLESDVFVRSALIDVYSKWSDLDNALGVF 210

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMA 536
             MP + + +VW +++G    + D   A
Sbjct: 211 DEMPTR-DLVVWNSIIGGFAQNSDGNEA 237


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/704 (34%), Positives = 392/704 (55%), Gaps = 32/704 (4%)

Query: 17   TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
              L+S   +  ++H+  Q+HS  IK G+  +  ++  L+    S+  D++ A K F    
Sbjct: 366  ASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLY-SKCADVETAHKFFLXTE 424

Query: 77   RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
              ++ LWN M+  Y ++D+  +   I+  M    + P+ +T+P +L+  T   A+  G++
Sbjct: 425  TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 137  LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
            +H HV+K GF  +V+V + LI  Y   G++ +A  I     +DDVV+W AM +GY +   
Sbjct: 485  IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544

Query: 197  FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            F E  +LF EME +G+   ++     +SACA ++ L  G++ H          +L + NA
Sbjct: 545  FSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNA 604

Query: 257  LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
            L  +YA CG                               ++  A   F+++ +++ + W
Sbjct: 605  LISLYARCG-------------------------------RIQEAYLAFEKIGDKNNISW 633

Query: 317  TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
             +++ G  +   F EAL +F  M  +    + FT  S ++A A+L  ++ G+ + + + K
Sbjct: 634  NSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLK 693

Query: 377  NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
                ++  V N+LI +Y K G +  A R F +M  ++  +W AMI G + +G G ++L +
Sbjct: 694  TGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRL 753

Query: 437  FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
            F +M    I+P+ VT+VGVLSAC+H G+V EG +YF  M   H + P   HY C+VDLLG
Sbjct: 754  FEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLG 813

Query: 497  RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
            RAG L+ A+E IK MP+  ++++W  LL AC +H++ E+ E AA  +LEL+P++ A YVL
Sbjct: 814  RAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVL 873

Query: 557  LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
            + NIYA   +W +    R+++ D G+KK PG S IE+   VH F AGDK HP T +IY  
Sbjct: 874  ISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEY 933

Query: 617  LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
            +  +      +GY+ D   +  +  +  K+   + HSEKLA+AFGL+S G  + IR++KN
Sbjct: 934  IGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKN 993

Query: 677  LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            LR+C DCH   K VS + +R +IVRD  RFHHF  G CSCKD+W
Sbjct: 994  LRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/495 (28%), Positives = 244/495 (49%), Gaps = 34/495 (6%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           +KQ+HS+T   G  ++P V N L+    S+ G ++ A KVF  I    +  W  MI G S
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLY-SKNGYIESAKKVFNCICMKDIVTWVAMISGLS 237

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           +    +  +L++ DM  S++ P  Y    +L   T+    E G++LHC V+K+GF S  +
Sbjct: 238 QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETY 297

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V N L++ Y    ++  A  IF      D V++N++ SG  +    D   +LF +M+R  
Sbjct: 298 VCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC 357

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           + P  +T+  +LSACA +  L  G + H +  +  +  ++ILE +L D+Y+ C ++  A 
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           + F   + ++++ W  ++  Y   GQ+D                               +
Sbjct: 418 KFFLXTETENIVLWNVMLVAY---GQLD----------------------------NLSD 446

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           +  +FR+MQ   + P++FT  SIL  C +LGAL LGE + T++ K   + +++V + LID
Sbjct: 447 SFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLID 506

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY K G +  A R+ R +   D  +WTAMI G   +    ++L +F +M    I  D + 
Sbjct: 507 MYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIG 566

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +   +SAC     + +G++  A  +   G   + +    ++ L  R G + EA    + +
Sbjct: 567 FASAISACAGIRALRQGQQIHAQ-SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKI 625

Query: 512 PMKPNSIVWGALLGA 526
             K N+I W +L+  
Sbjct: 626 GDK-NNISWNSLVSG 639



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 236/507 (46%), Gaps = 35/507 (6%)

Query: 25  TCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWN 84
           T  S+ +  ++H +  K G    P + + LV       GD   A KVF +    SV  WN
Sbjct: 70  TSGSLFETMRLHCRISKSGFDGEPLLIDSLVD-NYFRHGDQHGAVKVFDENSNRSVFSWN 128

Query: 85  TMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG-FTRDIAVEFGKELHCHVLK 143
            MI  +    S+     ++  ML   + P+ YTF  +LK     DIA  + K++H     
Sbjct: 129 KMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFY 188

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
           +GFDSS  V N LI  Y   G ++ A+ +F+     D+VTW AM SG  +    +E   L
Sbjct: 189 YGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILL 248

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           F +M    + PT   +  VLSA  K++  ++G++ H  V +        + N L  +Y+ 
Sbjct: 249 FCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSR 308

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
             ++  A  IF  + ++D +S+ ++++G + +G  D                        
Sbjct: 309 SRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSD------------------------ 344

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
                   AL LF +MQ   ++PD  T+ S+L+ACA++GAL  G  + ++  K  +  DI
Sbjct: 345 -------RALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADI 397

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
            +  +L+D+Y KC DVE A + F     ++   W  M+V      +   S ++F QM   
Sbjct: 398 ILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQME 457

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            +IP++ TY  +L  CT  G +  G E      I+ G + N      ++D+  + G L  
Sbjct: 458 GMIPNQFTYPSILRTCTSLGALYLG-EQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLAL 516

Query: 504 ALEVIKNMPMKPNSIVWGALLGACRVH 530
           AL +++ +P + + + W A++     H
Sbjct: 517 ALRILRRLP-EDDVVSWTAMIAGYVQH 542



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 1/194 (0%)

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           + L   M+   +R +    + +L  C   G+L     +   I K+    +  + ++L+D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y + GD   A +VF E   +  F+W  MI          +   +F +ML   I P+  T+
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
            GVL AC    +     +     T  +G + +      ++DL  + G++  A +V   + 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 513 MKPNSIVWGALLGA 526
           MK + + W A++  
Sbjct: 223 MK-DIVTWVAMISG 235


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/587 (39%), Positives = 350/587 (59%), Gaps = 32/587 (5%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK LHC +LK G    +F  N L++ Y     +  A  +FD   + + +++  +  GY  
Sbjct: 57  GKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAE 116

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
             +F E  +LF  + R+ VLP   T   VL ACA ++ L++G + H +V +  +  ++ +
Sbjct: 117 SVRFLEAIELFVRLHRE-VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFV 175

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            NAL D+YA CG M  ++E+F                                + P R+ 
Sbjct: 176 SNALMDVYAKCGRMENSMELFA-------------------------------ESPHRND 204

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           V W  +I G++++    +AL LF  M    ++  E T  S L ACA+L ALE G  + + 
Sbjct: 205 VTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSL 264

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
             K     DI V NALIDMY KCG ++ A+ VF  M ++D+ +W AMI G +++G G ++
Sbjct: 265 TVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREA 324

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           L +F +M    + PD++T+VGVLSAC + G++D+G+ YF  M   HGIEP   HY CMV 
Sbjct: 325 LRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVW 384

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           LLGR GHL++A+++I  +P +P+ +VW ALLGAC +H D E+  ++A+++LE++P ++A 
Sbjct: 385 LLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKAT 444

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           +VLL N+YA   RWDN   +R+ +  +G+KK PG S IE  G VH F  GD SHP+ + I
Sbjct: 445 HVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVI 504

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
              L+ +    K  GY+P+ + V LDV +E+KER ++ HSE+LA++FG+I +  G  IRI
Sbjct: 505 NGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRI 564

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +KNLR+CVDCH   K +S V  RE++VRD  RFHHF+ G CSC DYW
Sbjct: 565 MKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 186/389 (47%), Gaps = 37/389 (9%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A K+F ++P  +   + T+I+GY+        + +++  L  +V P+ +TF  +L+    
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVR-LHREVLPNQFTFASVLQACAT 150

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
              +  G ++HCHV+K G  S VFV NAL+  Y  CG ++ +  +F  S   + VTWN +
Sbjct: 151 MEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTV 210

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
             G+ ++   ++  +LF  M    V  T VT    L ACA L  L+ G + H    +   
Sbjct: 211 IVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTF 270

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             ++++ NAL DMYA CG +  A  +F  +  +D +SW A+++GY   G           
Sbjct: 271 DKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG----------- 319

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                 REAL +F +MQ + ++PD+ T V +L+ACAN G L+ G
Sbjct: 320 --------------------LGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQG 359

Query: 368 E-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLA 425
           + +  + I  + ++  I     ++ +  + G ++KA ++  E+  +     W A++    
Sbjct: 360 QAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACV 419

Query: 426 INGHGDKSLDMFSQMLRASIIP-DEVTYV 453
           I  H D  L   S      + P D+ T+V
Sbjct: 420 I--HNDIELGRISAQRVLEMEPQDKATHV 446



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 163/344 (47%), Gaps = 9/344 (2%)

Query: 12  TLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
            L  +    S ++ C +M  L    QIH   IK+GL ++  V N L+    ++ G M+ +
Sbjct: 134 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVY-AKCGRMENS 192

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            ++F + P  +   WNT+I G+ ++   +  + ++L+ML+  V+    T+   L+     
Sbjct: 193 MELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASL 252

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            A+E G ++H   +K  FD  + V NALI  Y  CG +  AR +FD+  K D V+WNAM 
Sbjct: 253 AALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMI 312

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKI 247
           SGY       E  ++F +M+   V P  +T V VLSACA    LD G+      +++  I
Sbjct: 313 SGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGI 372

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMAR---Q 303
            P +     +  +    G +  A+++   I     V+ W A++   +    +++ R   Q
Sbjct: 373 EPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQ 432

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
              +M  +D      + + Y    R+    ++ + M+   ++ +
Sbjct: 433 RVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKE 476


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/703 (34%), Positives = 394/703 (56%), Gaps = 33/703 (4%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+S     +S+++++Q+HS  IKLG  +   V N L+   C  +  +  A ++F  IP  
Sbjct: 204 LLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTR-SLGLAFQLFNDIPER 262

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
               +N ++ GYS+   ++  + ++  M +   RP  +TF  +L    +   +EFG+++H
Sbjct: 263 DSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVH 322

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
             V+K  F  +VFV NAL+  Y     V  A  +F    + D +++N + + Y    +  
Sbjct: 323 GFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVK 382

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E+ +LF E++  G    +     +LS  A   +LD+G++ H        +  +++ N+L 
Sbjct: 383 ESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLV 442

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA CGE G A  IF                        D+A Q          V WTA
Sbjct: 443 DMYAKCGEFGEANRIFS-----------------------DLAIQ--------SSVPWTA 471

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           MI  Y++     + L LF EMQ + I  D  T  SI+ ACA+L +L LG+ + ++I  + 
Sbjct: 472 MISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSG 531

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
             +++F G+AL+DMY KCG ++ A ++F+EM  ++  +W A+I   A NG GD +L +F 
Sbjct: 532 YISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFE 591

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M+R+ + PD V+ + +L AC+H G+V+EG +YF  MT  + + P + HY   +D+L R 
Sbjct: 592 EMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRG 651

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV-YVLL 557
           G  +EA +++  MP +P+ I+W ++L +C +H++ E+A+ AA Q+  +    +A  YV +
Sbjct: 652 GRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTM 711

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            NIYAA   WDN  ++++ + +RG+KK P  S +E+    H F A DK+HPQ +EI  KL
Sbjct: 712 SNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKL 771

Query: 618 DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
           DE+   +   GY PD S    +V EE K  ++  HSE++A+AF LIS+  G  I ++KNL
Sbjct: 772 DELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPILVMKNL 831

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R C DCH   K++S +  RE+ VRD +RFHHF+ G C+C+DYW
Sbjct: 832 RACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 52/458 (11%)

Query: 79  SVCLWNTMIKGYSR-----IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           ++ L N +IK  +R     + + K  + +   ++K+   P+ Y   FL+K F +   +  
Sbjct: 60  TLSLMNNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNG 119

Query: 134 GKELHCHVLKFGFDS----SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            ++L        FD     ++F  N +I  Y   G +  AR +FD  ++   VTW  +  
Sbjct: 120 ARKL--------FDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIG 171

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY +  QF E   LF EM R G+ P  V++  +LS   +   ++  ++ H +V +     
Sbjct: 172 GYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDS 231

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
            L++ N+L D Y     +G A ++F +I  +D +++ A++TGY   G        F+   
Sbjct: 232 TLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEG--------FN--- 280

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
                               REA+ LF +MQ    RP EFT  +ILTA   L  +E G+ 
Sbjct: 281 --------------------REAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQ 320

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           V  ++ K     ++FV NAL+D Y K   V +A ++F EM   D  ++  ++   A NG 
Sbjct: 321 VHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGR 380

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
             +SL++F ++           +  +LS    +  +D GR+  +   +   I  +E   G
Sbjct: 381 VKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAI--SEILVG 438

Query: 490 -CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
             +VD+  + G   EA  +  ++ ++ +S+ W A++ +
Sbjct: 439 NSLVDMYAKCGEFGEANRIFSDLAIQ-SSVPWTAMISS 475



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 151/324 (46%), Gaps = 11/324 (3%)

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           +G+   KQ++ T  L   +    + P +  +V  L+A      +D        + +    
Sbjct: 49  AGHFGSKQYELTLSLMNNI----IKPCTRNLVTTLTAPKPHLHVDAS------IIKTGFN 98

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
           PN    N L   +   G++  A ++F  + +K++ S   ++ GYI  G +  AR  FD M
Sbjct: 99  PNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSM 158

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
            +R  V WT +I GY + N+FREA  LF EM    I PD  ++ ++L+      ++    
Sbjct: 159 FQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVR 218

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            V +++ K    + + V N+L+D YCK   +  A ++F ++  +D  T+ A++ G +  G
Sbjct: 219 QVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEG 278

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
              +++++F +M      P E T+  +L+A      ++ G++      ++     N    
Sbjct: 279 FNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHG-FVVKCNFVWNVFVA 337

Query: 489 GCMVDLLGRAGHLNEALEVIKNMP 512
             ++D   +   + EA ++   MP
Sbjct: 338 NALLDFYSKHDRVVEASKLFYEMP 361


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/521 (43%), Positives = 324/521 (62%), Gaps = 4/521 (0%)

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           +  M   G+L  + T+  VL +CA L  + +G+  H       +  +  +  +L DMY  
Sbjct: 95  YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 154

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           CG +G A ++F  +  +D+ SW A++ GY+  G++ +A   F++M  R+ V WTAMI GY
Sbjct: 155 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 214

Query: 324 LRVNRFREALTLFREM--QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
            +     +AL LF EM    S ++P+  TIVS+L ACA   ALE G  +  + +   +  
Sbjct: 215 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 274

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQ 439
           +  V  AL  MY KC  + +A+  F  + +  K    W  MI   A +G G +++ +F  
Sbjct: 275 NSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 334

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           MLRA + PD VT++G+LS C+H+G++D G  +F DM   H +EP   HY C+VDLLGRAG
Sbjct: 335 MLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 394

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
            L EA E+I  MPM+    VWGALL ACR HR+ E+AE+AA+++  L+PDN   YVLL N
Sbjct: 395 RLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSN 454

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           +YA    W+  ++LR ++  +G+KK+PGCS IE+NG  H F+  DKSHPQ KEIY  L+ 
Sbjct: 455 LYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEA 514

Query: 620 MTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
           +   +K  GY+PD S V  D+ EE+KE  +  HSEKLA+AFGL+++ PGV +R+ KNLR+
Sbjct: 515 LPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRI 574

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C DCH   K +S +Y+RE+IVRD  RFH FK GSCSC DYW
Sbjct: 575 CGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 169/405 (41%), Gaps = 75/405 (18%)

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           DN+T PF+LK       V  G+ +H   L+ G +   +V  +LI  Y  CG +  AR +F
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165

Query: 174 D----------------------VSYKDD---------VVTWNAMFSGYKRVKQFDETRK 202
           D                      +   +D         +V+W AM SGY +    ++   
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALG 225

Query: 203 LFGEMERKG--VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
           LF EM + G  + P  VTIV VL ACA+   L+ G+R H +     +  N  ++ AL  M
Sbjct: 226 LFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGM 285

Query: 261 YAACGEMGFALEIFGNI--KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           YA C  +  A   F  I    K++I+W  ++T Y + G                      
Sbjct: 286 YAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGC--------------------- 324

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-- 376
                       EA+++F  M  + ++PD  T + +L+ C++ G ++ G  +  + D   
Sbjct: 325 ----------GVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG--LNHFNDMGT 372

Query: 377 -NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSL 434
            + V+  +     ++D+  + G + +A+ +  +M ++     W A++   A   H +  +
Sbjct: 373 IHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLA--ACRSHRNLEI 430

Query: 435 DMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQ 478
              +      + PD    YV + +     GM +E ++  A +  Q
Sbjct: 431 AELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQ 475



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 33/170 (19%)

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L  +  M    +  D FT+  +L +CA+L  + +G  V     +  ++ D +VG +LIDM
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 393 YCKCGDVEKAQRVFREMLRKDK-------------------------------FTWTAMI 421
           Y KCG +  A+++F +M+ +D                                 +WTAMI
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 422 VGLAINGHGDKSLDMFSQMLR--ASIIPDEVTYVGVLSACTHTGMVDEGR 469
            G   NG  +++L +F +ML+  + + P+ VT V VL AC  +  ++ GR
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGR 261



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 4/179 (2%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK--SDVRPDNYTF 118
           ++G++  A  +F ++   ++  W  MI GY++    +  + ++ +ML+  S+++P+  T 
Sbjct: 185 KEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTI 244

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             +L    +  A+E G+ +H      G   +  VQ AL   Y  C  +  AR  FD+  +
Sbjct: 245 VSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQ 304

Query: 179 D--DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
           +  +++ WN M + Y       E   +F  M R GV P +VT + +LS C+    +D G
Sbjct: 305 NGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG 363



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 10/139 (7%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCE---SMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           M  + S   P+ +T    ++S +  C    ++ + ++IH     +GL  N +VQ  L   
Sbjct: 230 MLQDGSEMKPNWVT----IVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGM 285

Query: 58  CCSEKGDMKYACKVFRKIPR--PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN 115
                  ++  C  F  I +   ++  WNTMI  Y+        V I+ +ML++ V+PD 
Sbjct: 286 YAKCYSLVEARC-CFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDA 344

Query: 116 YTFPFLLKGFTRDIAVEFG 134
            TF  LL G +    ++ G
Sbjct: 345 VTFMGLLSGCSHSGLIDAG 363


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/702 (35%), Positives = 390/702 (55%), Gaps = 37/702 (5%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S ++ C ++    +IH   +K G + +  V   L+   C   G +  A  +F ++P   +
Sbjct: 158 SVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYC-RYGAVVNARILFDEMPTRDM 216

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
             WN MI GY +  + K   L   D L++    D+ T   LL   T       G  +H +
Sbjct: 217 GSWNAMISGYCQSGNAKEA-LTLSDGLRA---MDSVTVVSLLSACTEAGDFNRGVTIHSY 272

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
            +K G +S +FV N LI  Y   G +   + +FD  Y  D+++WN++   Y+  +Q    
Sbjct: 273 SIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRA 332

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             LF EM    + P  +T++ + S  ++L +          ++ C+ V    L       
Sbjct: 333 ILLFQEMRLSRIQPDCLTLISLASILSQLGE----------IRACRSVQGFTLRK----- 377

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
                  G+ LE        D+    A+V  Y   G VD AR  F+ +P +D + W  +I
Sbjct: 378 -------GWFLE--------DITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTII 422

Query: 321 DGYLRVNRFREALTLFR--EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
            GY +     EA+ ++   E +   I  ++ T VS+L AC+  GAL  G  +   + KN 
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 482

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +  D+FVG +L DMY KCG ++ A  +F ++ R +   W  +I     +GHG+K++ +F 
Sbjct: 483 LYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 542

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +ML   + PD +T+V +LSAC+H+G+VDEG   F  M   +GI P+  HYGCMVDL GRA
Sbjct: 543 EMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRA 602

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G L  AL  IK+MP++P++ +WGALL ACRVH + ++ ++A++ + E++P++   +VLL 
Sbjct: 603 GQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLS 662

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           N+YA+  +W+   E+R +   +G++KTPG S +E++  V  F  G+++HP  +E+Y +L 
Sbjct: 663 NMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 722

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
            +   LK VGY+PD   V  DV +++KE  +  HSE+LAMAF LI++    TIRI KNLR
Sbjct: 723 ALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNLR 782

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C DCH + K +S + +RE+IVRD  RFHHFK+G CSC DYW
Sbjct: 783 VCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  222 bits (565), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 171/583 (29%), Positives = 273/583 (46%), Gaps = 59/583 (10%)

Query: 26  CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT 85
           C ++   K +H++ +    + N  +  KLV   C   G++  A   F  I    V  WN 
Sbjct: 64  CTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCY-LGNVALARYTFDHIHNRDVYAWNL 122

Query: 86  MIKGYSRIDSHKNGVLIY-LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF 144
           MI GY R       +  + L ML S ++PD  TFP +LK       V  G ++HC  LKF
Sbjct: 123 MISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKIHCLALKF 179

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           GF   V+V  +LI  YC  G V  AR +FD     D+ +WNAM SGY +     E   L 
Sbjct: 180 GFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLS 239

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
             +        SVT+V +LSAC +  D + G   H Y  +  +   L + N L D+YA  
Sbjct: 240 DGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEF 295

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
           G +    ++F  +  +D+ISW +I+  Y             ++ P R             
Sbjct: 296 GSLKDCQKVFDRMYVRDLISWNSIIKAY-----------ELNEQPLR------------- 331

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY-IDKNKVKNDI 383
                  A+ LF+EM+ S I+PD  T++S+ +  + LG +     V+ + + K     DI
Sbjct: 332 -------AILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDI 384

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR- 442
            +GNA++ MY K G V+ A+ VF  +  KD  +W  +I G A NG   ++++M++ M   
Sbjct: 385 TIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEE 444

Query: 443 -ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
              I  ++ T+V VL AC+  G + +G +    + +++G+  +      + D+ G+ G L
Sbjct: 445 GGEISANQGTWVSVLPACSQAGALRQGMKLHGRL-LKNGLYLDVFVGTSLADMYGKCGRL 503

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCN 559
           ++AL +   +P + NS+ W  L+     H   E A M  K++L+  + PD+     LL  
Sbjct: 504 DDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLL-- 560

Query: 560 IYAACNRWDNFRE----LRQMILDRGIK---KTPGCSMIEMNG 595
             +AC+      E       M  D GI    K  GC M+++ G
Sbjct: 561 --SACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGC-MVDLYG 600



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 142/313 (45%), Gaps = 20/313 (6%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLG-LLTNPTVQNKLVTFCCSEKGDM 65
           IS  S L+Q    +  I  C S+         T++ G  L + T+ N +V    ++ G +
Sbjct: 352 ISLASILSQ----LGEIRACRSVQGF------TLRKGWFLEDITIGNAVVVMY-AKLGLV 400

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIY--LDMLKSDVRPDNYTFPFLLK 123
             A  VF  +P   V  WNT+I GY++       + +Y  ++    ++  +  T+  +L 
Sbjct: 401 DSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLP 460

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
             ++  A+  G +LH  +LK G    VFV  +L   Y  CG +D A  +F    + + V 
Sbjct: 461 ACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVP 520

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           WN + + +      ++   LF EM  +GV P  +T V +LSAC+    +D G+     ++
Sbjct: 521 WNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQ 580

Query: 244 -ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMA 301
            +  I P+L     + D+Y   G++  AL    ++    D   W A+++     G VD+ 
Sbjct: 581 TDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLG 640

Query: 302 R----QYFDQMPE 310
           +      F+  PE
Sbjct: 641 KIASEHLFEVEPE 653


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/617 (39%), Positives = 357/617 (57%), Gaps = 16/617 (2%)

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
           +P    +  LLK   +  A++ GK++H H+   G    +++ N L+  Y  CG +  A  
Sbjct: 116 KPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEK 174

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +FD     D+ +WN M SGY +   F++ R LF +M  +     +  I   +      + 
Sbjct: 175 VFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEA 234

Query: 232 LDVGK--RAHRYVK--ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK----NKDVI 283
           L++ +  + H Y K  +C I   L    A+  ++     MG   +I G+I     + D +
Sbjct: 235 LELYRLMQKHDYSKSNKCTISSALAASAAIPSLH-----MG--KKIHGHIMRMGLDSDEV 287

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
            W +++  Y   G ++ AR  FD+M ERD V WT MI  YL+  R  E   LFR +  SN
Sbjct: 288 VWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSN 347

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           I P++FT   +L ACA+L A +LG+ +  Y+ +    +     +AL+ MY KCGD+E A+
Sbjct: 348 IMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAK 407

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
            VF  + + D F+WT+++VG A +G  DK+L  F  +L++   PD + ++GVLSAC H G
Sbjct: 408 SVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAG 467

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
           +VD+G EYF  +  +HG+     HY C++DLL RAG   EA  +I  MP+KP+  +W AL
Sbjct: 468 LVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAAL 527

Query: 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           LG CR+H + E+A+ AAK + E++P+N A YV L NIYA+         +R+ +  RGI 
Sbjct: 528 LGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIV 587

Query: 584 KTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEE 643
           K PG S IE+   VH F  GD SHP++KEI   L E++  +K VGY+PD + V  DV  E
Sbjct: 588 KKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELE 647

Query: 644 DKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDK 703
            KE  +  HSEKLA+AFG+IS+  G  I++ KNLR CVDCH   K +S +  R++IVRD 
Sbjct: 648 QKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDS 707

Query: 704 TRFHHFKHGSCSCKDYW 720
            RFH F+ GSCSCKDYW
Sbjct: 708 NRFHCFEGGSCSCKDYW 724



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 117/479 (24%), Positives = 205/479 (42%), Gaps = 78/479 (16%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           ++ + KQ+H+  IK        + N+L+    ++ G +  A KVF ++    +C WN MI
Sbjct: 134 ALKEGKQVHAH-IKTSGSIGLYISNRLLDMY-AKCGSLVDAEKVFDEMVHRDLCSWNIMI 191

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD------------------- 128
            GY +  + +    ++  M       DN+++  ++ G  +                    
Sbjct: 192 SGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCVQHNRPEEALELYRLMQKHDYS 247

Query: 129 -----------------IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
                             ++  GK++H H+++ G DS   V  +L+  Y  CG ++ AR 
Sbjct: 248 KSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARY 307

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           IFD   + DVV+W  M   Y +  + +E   LF  +    ++P   T   VL+ACA L  
Sbjct: 308 IFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAA 367

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
            D+GK+ H Y+            +AL  MY+ CG++  A  +F  +   D+ SWT+++ G
Sbjct: 368 EDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVG 427

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           Y   GQ D                               +AL  F  +  S  +PD    
Sbjct: 428 YAQHGQHD-------------------------------KALHFFELLLKSGTKPDGIAF 456

Query: 352 VSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM- 409
           + +L+ACA+ G ++ G E+  +  +K+ +   I     +ID+  + G   +A+ +  EM 
Sbjct: 457 IGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMP 516

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDE 467
           ++ DK+ W A++ G  I  HG+  L   +      I P+   TYV + +     GM  E
Sbjct: 517 IKPDKYIWAALLGGCRI--HGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAE 573


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/762 (35%), Positives = 408/762 (53%), Gaps = 101/762 (13%)

Query: 26  CESMHQL--KQIHSQTIKLGLLTNPT--VQNKLVTFCCSEKGDMKYACKVFRKIPRPSVC 81
           CE+ +Q   K++H   IK   LTNP   + N L+    S+ G++ YA  VF K+P+P+  
Sbjct: 16  CETRNQTQAKKLHCLIIKS--LTNPETFLYNNLIN-AYSKLGNITYARHVFDKMPQPNSF 72

Query: 82  LWNTMIKGYSR------------IDSHKNGV----LI---------------YLDMLKSD 110
            WNTM+  YS+            I  +++GV    LI               Y  M+K  
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 111 VRPDN-YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
           V   N  TF  +L   +    V+ G+++H  ++KFGF + VFV ++L+  Y   G V +A
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG------------------------ 205
             +FD   + +VV +N M +G  R     ++++LF                         
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 206 -------EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
                  +M ++G+     T   VL+AC  L+ L  GK  H  +       N+ + +AL 
Sbjct: 253 EAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALV 312

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMY  C  + +A  +F  + NK+V                               V WTA
Sbjct: 313 DMYCKCRSVRYAEAVFKRMANKNV-------------------------------VSWTA 341

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           M+ GY +     EA+ +F +MQ + I PD+FT+ S++++CANL +LE G         + 
Sbjct: 342 MLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSG 401

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           + + I V NALI +Y KCG +E + ++F EM  +D+ +WTA++ G A  G  ++++D+F 
Sbjct: 402 LISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFE 461

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +ML   + PD VT++ VLSAC+  G+V+ G++YF  M   HGI P   HY CM+DL GRA
Sbjct: 462 RMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRA 521

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G L EA   I  MP  P+SI W  LL +CR++ + E+ + AA+ +LELDP N A Y+LL 
Sbjct: 522 GRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLS 581

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           +IYAA  +W N  +LR+ + ++G +K PG S I+    V+ F A D+S P + +IY +L+
Sbjct: 582 SIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELE 641

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
           ++   +   GY+PD S V  DV + +K + +  HSEKLA+AFGL+    G+ IR+VKNLR
Sbjct: 642 KLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLR 701

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C DCH   K +S +  RE++VRD  RFH FK G+CSC D+W
Sbjct: 702 VCGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 144/331 (43%), Gaps = 34/331 (10%)

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           C + ++    K+ H  + +    P   L N L + Y+  G + +A  +F  +   +  SW
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI- 344
             +++ Y   G +   ++ F  MP RD V W ++I GY+      EA+  +  M    + 
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
             +  T  ++L   ++ G ++LG  +   I K      +FVG++L+DMY K G V  A +
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 405 VFRE-------------------------------MLRKDKFTWTAMIVGLAINGHGDKS 433
           VF E                               M  +D  +WT MI GL  NG   ++
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEA 254

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           +D+F  M +  +  D+ T+  VL+AC     + EG+E    + I+ G   N      +VD
Sbjct: 255 MDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKE-IHTLIIRSGYNHNVFVGSALVD 313

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           +  +   +  A  V K M  K N + W A+L
Sbjct: 314 MYCKCRSVRYAEAVFKRMANK-NVVSWTAML 343



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L S I +C ++  L+   Q H Q +  GL++  TV N L+T    + G ++ + ++F ++
Sbjct: 374 LGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITL-YGKCGSIEDSNQLFDEM 432

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  W  ++ GY++       + ++  ML   ++PD  TF  +L   +R   VE G+
Sbjct: 433 SFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQ 492

Query: 136 ELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFS 189
           +    +LK  G          +I  +   G ++ A+   + + +  D + W  + S
Sbjct: 493 QYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLS 548


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/624 (37%), Positives = 362/624 (58%), Gaps = 36/624 (5%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P   T    ++     C +   L Q  S  I  GL  +    + L+    S   D+ Y  
Sbjct: 2   PKLATLRHSILCCFHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLR---SATKDLGYTL 58

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
            +F ++  P + LWNT+++ +S     +  ++ Y  +    V PD +TFP LLK F++ +
Sbjct: 59  LLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSK-L 117

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
             E   + + H++KFG D   FVQN+L+S +  CG VD +R +F  + K DVV+W A+ +
Sbjct: 118 RNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALIN 177

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR-YVKECKIV 248
           G  R  +  E  + F EM   GV    VT+V VL A A L+D+  G+  H  YV+  +++
Sbjct: 178 GCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVI 237

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            ++ + +AL DMY+ CG                                 D A + F++M
Sbjct: 238 WDVYVGSALVDMYSKCG-------------------------------YCDDAVKVFNEM 266

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
           P R+ V W A+I GY++ NR++EAL +F+EM    I P++ T+ S LTACA LG+L+ G 
Sbjct: 267 PTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGR 326

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           W+  Y+D++K+  +  +G AL+DMY KCG V++A  VF ++  KD + WTAMI GLA+ G
Sbjct: 327 WLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRG 386

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
               SL++FSQM+R+ + P+ VT++GVLSAC H G+VDEG E F  M   + +EPN  HY
Sbjct: 387 DALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHY 446

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
           GCMVDLLGRAG L EA++ I++MPM+P   VWGAL   C +H+  E+ E     +++L P
Sbjct: 447 GCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQP 506

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
            +   Y+LL N+Y+ C +W+    +R+++  +G+ K+P CS IE+NGV+HEF+A DKSH 
Sbjct: 507 HHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNGVIHEFIAFDKSHI 566

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPD 632
           ++  +Y+ L  +T+ LK   Y  D
Sbjct: 567 ESINVYMMLGSVTAQLKLATYALD 590


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/704 (34%), Positives = 376/704 (53%), Gaps = 60/704 (8%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
             L+S   +  ++   KQ HS  IK G+ ++  V+  L+        D+   C   +   
Sbjct: 356 ASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLL--------DLYVKCSDIKTAH 407

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
              +C        Y ++D+      I+  M    + P+ +T+P +LK  T   A + G++
Sbjct: 408 EFFLC--------YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQ 459

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  VLK GF  +V+V + LI  Y   G++D A  IF    ++DVV+W AM +GY +  +
Sbjct: 460 IHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDK 519

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
           F E   LF EM+ +G+   ++     +SACA ++ LD G++ H          +L + NA
Sbjct: 520 FTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNA 579

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L  +YA CG                               +V  A   FDQ+  +D V W
Sbjct: 580 LVSLYARCG-------------------------------KVREAYAAFDQIYAKDNVSW 608

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
            +++ G+ +   F EAL +F +M  + +  + FT  S ++A AN+  + +G+ +   I K
Sbjct: 609 NSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRK 668

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
               ++  V NALI +Y KCG +             D  +W +MI G + +G G ++L +
Sbjct: 669 TGYDSETEVSNALITLYAKCGTI-------------DDISWNSMITGYSQHGCGFEALKL 715

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F  M +  ++P+ VT+VGVLSAC+H G+VDEG  YF  M+  H + P   HY C+VDLLG
Sbjct: 716 FEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLG 775

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R+G L+ A   ++ MP++P+++VW  LL AC VH++ ++ E AA  +LEL+P + A YVL
Sbjct: 776 RSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVL 835

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           + N+YA   +WD     RQM+ DRG+KK PG S +E++  VH F AGD++HP+   IY  
Sbjct: 836 VSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEY 895

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L  +       GY+P  + +  D     K+     HSE+LA+AFGL+S      + + KN
Sbjct: 896 LRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKN 955

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C DCH   K VS + DR +IVRD  RFHHFK GSCSCKDYW
Sbjct: 956 LRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 147/576 (25%), Positives = 261/576 (45%), Gaps = 92/576 (15%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S   ++QIH++TI  G  ++  + N L+     + G +  A KVF  +       W  MI
Sbjct: 179 SFRFVEQIHAKTITSGFESSTFICNPLIDLYF-KNGFLSSAKKVFENLKARDSVSWVAMI 237

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
            G S+    +  +L++  ++              L   T+    EFGK+LH  VLK GF 
Sbjct: 238 SGLSQNGYEEEAMLLFCQIV--------------LSACTKVEFFEFGKQLHGLVLKQGFS 283

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           S  +V NAL++ Y   G +  A  IF    + D V++N++ SG  +    +    LF +M
Sbjct: 284 SETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKM 343

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
                 P  VT+  +LSACA +  L  GK+ H Y  +  +  ++++E +L D+Y  C ++
Sbjct: 344 NLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDI 403

Query: 268 GFA----------------------LEIFGNIKNK------------------------- 280
             A                      ++I G + N+                         
Sbjct: 404 KTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQ 463

Query: 281 --------DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
                   +V   + ++  Y   G++D A + F ++ E D V WTAMI GY + ++F EA
Sbjct: 464 VLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEA 523

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L LF+EMQ   I+ D     S ++ACA + AL+ G  +      +   +D+ +GNAL+ +
Sbjct: 524 LNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSL 583

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y +CG V +A   F ++  KD  +W +++ G A +G+ +++L++F+QM +A +  +  T+
Sbjct: 584 YARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTF 643

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN---------- 502
              +SA  +   V  G++    M  + G +        ++ L  + G ++          
Sbjct: 644 GSAVSAAANIANVRIGKQIHG-MIRKTGYDSETEVSNALITLYAKCGTIDDISWNSMITG 702

Query: 503 --------EALEVIKNMP---MKPNSIVWGALLGAC 527
                   EAL++ ++M    + PN + +  +L AC
Sbjct: 703 YSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSAC 738



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/522 (25%), Positives = 235/522 (45%), Gaps = 76/522 (14%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGY--SRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           GD+  A  VF ++P  S+  WN +   +   R+     G  ++  ML  +V  D   F  
Sbjct: 111 GDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPG--LFRRMLTKNVEFDERIFAV 168

Query: 121 LLKGFTRD-IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           +L+G + + ++  F +++H   +  GF+SS F+ N LI  Y   G +  A+ +F+     
Sbjct: 169 VLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKAR 228

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           D V+W AM SG  +    +E   LF +              +VLSAC K++  + GK+ H
Sbjct: 229 DSVSWVAMISGLSQNGYEEEAMLLFCQ--------------IVLSACTKVEFFEFGKQLH 274

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
             V +        + NAL  +Y+  G +  A +IF  +  +D +S+ ++++G   +G ++
Sbjct: 275 GLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYIN 334

Query: 300 MARQYFDQM------PE---------------------------------RDYVLWTAMI 320
            A   F +M      P+                                  D V+  +++
Sbjct: 335 RALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLL 394

Query: 321 DGYLR----------------VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           D Y++                ++   ++  +F +MQ   I P++FT  SIL  C  LGA 
Sbjct: 395 DLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGAT 454

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           +LGE + T + K   + +++V + LIDMY K G ++ A ++FR +   D  +WTAMI G 
Sbjct: 455 DLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGY 514

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
             +    ++L++F +M    I  D + +   +SAC     +D+GR+  A   +  G   +
Sbjct: 515 TQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLS-GYSDD 573

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            +    +V L  R G + EA      +  K N + W +L+  
Sbjct: 574 LSIGNALVSLYARCGKVREAYAAFDQIYAKDN-VSWNSLVSG 614



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 109/510 (21%), Positives = 211/510 (41%), Gaps = 90/510 (17%)

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           + +D + +G+     M +  VR ++ TF +LL+G     +   G +L             
Sbjct: 57  NEMDGNASGIGYLHLMEQHGVRANSQTFLWLLEGCLNSRSFYDGLKL------------- 103

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
                 I  Y   G+++ A  +FD      +  WN +F+ +   +       LF  M  K
Sbjct: 104 ------IDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTK 157

Query: 211 GVLPTSVTIVLVLSACA-KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
            V        +VL  C+         ++ H          +  + N L D+Y   G +  
Sbjct: 158 NVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSS 217

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           A ++F N+K +D +SW A+++G    G  +                              
Sbjct: 218 AKKVFENLKARDSVSWVAMISGLSQNGYEE------------------------------ 247

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
            EA+ LF ++              +L+AC  +   E G+ +   + K    ++ +V NAL
Sbjct: 248 -EAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNAL 292

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           + +Y + G++  A+++F  M ++D+ ++ ++I GLA  G+ +++L +F +M      PD 
Sbjct: 293 VTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDC 352

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL--------------- 494
           VT   +LSAC   G +  G++ F    I+ G+  +    G ++DL               
Sbjct: 353 VTVASLLSACASVGALPNGKQ-FHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFL 411

Query: 495 -LGRAGHLNEALEVIKNMPMK---PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD- 549
             G+  +LN++ ++   M ++   PN   + ++L  C      ++ E    Q+L+     
Sbjct: 412 CYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQF 471

Query: 550 NEAVYVLLCNIYAACNRWDN----FRELRQ 575
           N  V  +L ++YA   + D+    FR L++
Sbjct: 472 NVYVSSVLIDMYAKHGKLDHALKIFRRLKE 501


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/589 (38%), Positives = 354/589 (60%), Gaps = 34/589 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLC--GEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K+ H  +LK G     F  + L++T  L   G +D A  IF    +     +N M  G+ 
Sbjct: 5   KQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHV 64

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +    +E    + EM  +GV P + T   +L ACA+L  ++ G + H ++ +  +  ++ 
Sbjct: 65  KDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVF 124

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           ++N+L  MY  CGE+G    +F                               +QM ER 
Sbjct: 125 VQNSLISMYGKCGEIGVCCAVF-------------------------------EQMNERS 153

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNI-RPDEFTIVSILTACANLGALELGEWVK 371
              W+A+I  +  +  + + L L  +M      R +E  +VS+L+AC +LGAL+LG  V 
Sbjct: 154 VASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVH 213

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            ++ +N    ++ V  +LI+MY KCG + K   +F++M +K+K +++ MI GLA++G+G 
Sbjct: 214 GFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGR 273

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           + L +F++ML   + PD++ YVGVL+AC+H G+V EG + F  M ++HGIEP   HYGCM
Sbjct: 274 EGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCM 333

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDL+GRAG ++EALE+IK+MPM+PN ++W +LL A +VH + +  E+AAKQ+ +LD    
Sbjct: 334 VDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKA 393

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
           + YV+L N+YA   RW++    R  +  +G+ + PG S++E+   +H FV+ D  HPQ++
Sbjct: 394 SDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSE 453

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            +Y  L +M   LKF GY PD ++V  DV EE+K++ +  HS+KLA+A+ LI +  G  +
Sbjct: 454 SVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPV 513

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RIV+NLRMC DCH   KL+S+++DRE+ VRD+ RFHHFK G+CSC+DYW
Sbjct: 514 RIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 562



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 205/397 (51%), Gaps = 35/397 (8%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           M + KQ H++ +K GL  +    + LV  C  S+ G M YAC +FR++  P    +NTM+
Sbjct: 1   MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           +G+ +  + +  ++ Y +M +  V+PDN+T+P LLK   R  AVE G ++H H+LK G +
Sbjct: 61  RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           + VFVQN+LIS Y  CGE+ +   +F+   +  V +W+A+ + +  +  + +  +L G+M
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180

Query: 208 ERKGVLPTSVTIVL-VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
             +G      +I++ VLSAC  L  LD+G+  H ++       N+I+E +L +MY  CG 
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGX 240

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +   + +F  +  K+ +S++ +++G                            + GY   
Sbjct: 241 LYKGMCLFQKMAKKNKLSYSVMISGLA--------------------------MHGY--- 271

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFV 385
              RE L +F EM    + PD+   V +L AC++ G ++ G +       ++ ++  I  
Sbjct: 272 --GREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQH 329

Query: 386 GNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
              ++D+  + G +++A  + + M +  +   W +++
Sbjct: 330 YGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLL 366


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/700 (36%), Positives = 383/700 (54%), Gaps = 40/700 (5%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           + TC  M  L   ++IH   I+ G  ++  V N L+T    + GD+  A  VF K+P   
Sbjct: 214 LRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYV-KCGDVNTARLVFDKMPNRD 272

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
              WN MI GY        G+ ++  M+K  V PD  T   ++           G+++H 
Sbjct: 273 RISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHG 332

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           +VL+  F     + N+LI  Y   G ++ A  +F  +   D+V+W AM SGY+      +
Sbjct: 333 YVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQK 392

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             + +  ME +G++P  +TI +VLSAC+ L +LD+G   H   K+  +V   I+ N+L D
Sbjct: 393 ALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLID 452

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA C  +  ALEIF +   K+++S                               WT++
Sbjct: 453 MYAKCKCIDKALEIFHSTLEKNIVS-------------------------------WTSI 481

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I G    NR  EAL  FREM    ++P+  T+V +L+ACA +GAL  G+ +  +  +  V
Sbjct: 482 ILGLRINNRCFEALFFFREM-IRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGV 540

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
             D F+ NA++DMY +CG +E A + F   +  +  +W  ++ G A  G G  + ++F +
Sbjct: 541 SFDGFMPNAILDMYVRCGRMEYAWKQFFS-VDHEVTSWNILLTGYAERGKGAHATELFQR 599

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M+ +++ P+EVT++ +L AC+ +GMV EG EYF  M  ++ I PN  HY C+VDLLGR+G
Sbjct: 600 MVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSG 659

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
            L EA E I+ MPMKP+  VWGALL +CR+H   E+ E+AA+ I + D  +   Y+LL N
Sbjct: 660 KLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSN 719

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           +YA   +WD   E+R+M+   G+   PGCS +E+ G VH F++ D  HPQ KEI   L+ 
Sbjct: 720 LYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLER 779

Query: 620 MTSDLKFVGYM-PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
               +K  G   P+ S   +D+ E  K      HSE+LA+ FGLI+SGPG+ I + KNL 
Sbjct: 780 FYKKMKEAGVEGPESSH--MDIMEASKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLY 837

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           MC  CH + K +S    RE+ VRD  +FHHFK G CSC D
Sbjct: 838 MCQSCHNIVKFISREVRREISVRDAEQFHHFKGGICSCTD 877



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 214/488 (43%), Gaps = 48/488 (9%)

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           +CL   + +  S +DS        +  L+  V  D Y     L  + R  A + G  ++ 
Sbjct: 81  LCLLGNLDRAMSYLDS--------MHELRIPVEDDAYVALIRLCEWKR--ARKEGSRVYS 130

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           +V       S+ + NAL+S +   G +  A  +F    K ++ +WN +  GY +   FDE
Sbjct: 131 YVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDE 190

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
              L+  M   GV P   T   VL  C  + +L  G+  H +V       ++ + NAL  
Sbjct: 191 ALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALIT 250

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY  C                               G V+ AR  FD+MP RD + W AM
Sbjct: 251 MYVKC-------------------------------GDVNTARLVFDKMPNRDRISWNAM 279

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I GY       E L LF  M    + PD  T+ S++TAC  LG   LG  +  Y+ + + 
Sbjct: 280 ISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEF 339

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
             D  + N+LI MY   G +E+A+ VF     +D  +WTAMI G        K+L+ +  
Sbjct: 340 GRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKM 399

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M    I+PDE+T   VLSAC+    +D G     ++  Q G+         ++D+  +  
Sbjct: 400 MEAEGIMPDEITIAIVLSACSCLCNLDMGMN-LHEVAKQKGLVSYSIVANSLIDMYAKCK 458

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRV-HRDAEMAEMAAKQILELDPDNEAVYVLLC 558
            +++ALE+  +  ++ N + W +++   R+ +R  E      + I  L P++    V L 
Sbjct: 459 CIDKALEIFHS-TLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLKPNS----VTLV 513

Query: 559 NIYAACNR 566
            + +AC R
Sbjct: 514 CVLSACAR 521


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/704 (34%), Positives = 397/704 (56%), Gaps = 35/704 (4%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIPR 77
           L+S     E  +Q+ Q+ +Q IKLG  +   V N LV ++C S + D+  AC++F+++P 
Sbjct: 155 LLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDL--ACQLFKEMPE 212

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
                +N MI GYS+    +  V ++++M  S ++P  +TF  +L        +  G+++
Sbjct: 213 IDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQI 272

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H  V+K  F  +VFV NAL+  Y     V  AR +FD   + D V++N + SGY    + 
Sbjct: 273 HSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKH 332

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
                LF E++             +LS  +   D ++G++ H           +++ N+L
Sbjct: 333 KYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSL 392

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            DMYA CG+   A  IF N+ +                               R  V WT
Sbjct: 393 VDMYAKCGKFEEAEMIFTNLTH-------------------------------RSAVPWT 421

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           AMI  Y++   + E L LF +M+ +++  D+ T  S+L A A++ +L LG+ + ++I K+
Sbjct: 422 AMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS 481

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
              +++F G+AL+D+Y KCG ++ A + F+EM  ++  +W AMI   A NG  + +L  F
Sbjct: 482 GFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSF 541

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
            +M+ + + PD V+++GVLSAC+H+G+V+EG  +F  MT  + ++P   HY  +VD+L R
Sbjct: 542 KEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCR 601

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV-YVL 556
           +G  NEA +++  MP+ P+ I+W ++L ACR+H++ E+A  AA Q+  ++   +A  YV 
Sbjct: 602 SGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVN 661

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           + NIYAA  +W+N  ++ + + DRG+KK P  S +E+    H F A D+ HPQ +EI  K
Sbjct: 662 MSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKK 721

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           +D +T  ++ +GY PD S    +  E+ K  ++  HSE+LA+AF LIS+  G  I ++KN
Sbjct: 722 IDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKN 781

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR C+DCH   K++S +  RE+ VRD TRFHHF+ G CSC D+W
Sbjct: 782 LRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 180/375 (48%), Gaps = 37/375 (9%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N +IS Y   G +  AR +FD   +   VTW  +  GY ++ QF E  +LF +M+R G  
Sbjct: 87  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 146

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  VT V +LS C            H             + N +T +     ++G+    
Sbjct: 147 PDYVTFVTLLSGC----------NGHE------------MGNQITQVQTQIIKLGY---- 180

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
                +  +I    +V  Y    ++D+A Q F +MPE D V + AMI GY +     +A+
Sbjct: 181 -----DSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAV 235

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGA--LELGEWVKTYIDKNKVKNDIFVGNALID 391
            LF EMQ S ++P EFT  ++L  CAN+G   + LG+ + +++ K     ++FV NAL+D
Sbjct: 236 NLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLD 293

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
            Y K   V  A+++F EM  +D  ++  +I G A +G    + D+F ++   +    +  
Sbjct: 294 FYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFP 353

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +  +LS  ++T   + GR+  A  TI    +        +VD+  + G   EA  +  N+
Sbjct: 354 FATMLSIASNTLDWEMGRQIHAQ-TIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNL 412

Query: 512 PMKPNSIVWGALLGA 526
             + +++ W A++ A
Sbjct: 413 THR-SAVPWTAMISA 426



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 174/370 (47%), Gaps = 50/370 (13%)

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
           P+    N     +   GE+  A ++F  + +K+ +S   +++GY+  G +  AR+ FD M
Sbjct: 50  PDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGM 109

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
            ER  V WT +I GY ++N+F+EA  LF +MQ     PD  T V++L+ C      E+G 
Sbjct: 110 VERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGC---NGHEMGN 166

Query: 369 ---WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
               V+T I K    + + VGN L+D YCK   ++ A ++F+EM   D  ++ AMI G +
Sbjct: 167 QITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYS 226

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            +G  +K++++F +M  + + P E T+  VL  C + G+ D                   
Sbjct: 227 KDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDD------------------- 265

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
                   +LG+  H       +       N  V  ALL     H       + A+++ +
Sbjct: 266 -------IVLGQQIH-----SFVIKTNFVWNVFVSNALLDFYSKHDSV----IDARKLFD 309

Query: 546 LDPDNEAV-YVLLCNIYAACNR----WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
             P+ + V Y ++ + YA   +    +D FREL+    DR  K+ P  +M+ +     ++
Sbjct: 310 EMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDR--KQFPFATMLSIASNTLDW 367

Query: 601 VAGDKSHPQT 610
             G + H QT
Sbjct: 368 EMGRQIHAQT 377


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/710 (36%), Positives = 386/710 (54%), Gaps = 41/710 (5%)

Query: 48  PTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML 107
           P  +N     C + K  +  A      I +  + L  T I+ +S+++   + + ++  ML
Sbjct: 11  PLFENFSHCLCSATKASLSQA---HAHILKTGISLPET-IQIFSKLNHFGHVIRVFSYML 66

Query: 108 KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL--KFGFDSSV-------FVQ----- 153
              + PD+   P ++K      A++ GK++HC  L    G DS V       +VQ     
Sbjct: 67  TQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLK 126

Query: 154 -----------------NALISTYCLCGEVDMARGIF----DVSYKDDVVTWNAMFSGYK 192
                            +ALIS +   G V   + +F    D+  + ++V+WN M SG+ 
Sbjct: 127 DARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFN 186

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           R   + +   +F  M  +G+ P   ++  VL A   L    +G + H YV +  + P+  
Sbjct: 187 RSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKF 246

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + +AL DMY  C        +F  +   DV +  A+VTG    G VD A + F Q    D
Sbjct: 247 VVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMD 306

Query: 313 Y--VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
              V WT+MI    +  +  EAL LFREMQ   ++P+  TI  +L AC N+ AL  G+  
Sbjct: 307 LNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAA 366

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             +  +N + ND++VG+ALIDMY KCG +  ++  F  M  ++  +W +++ G A++G  
Sbjct: 367 HCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKT 426

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
            +++++F  M R    PD V++  VLSACT  G+ +EG  YF  M+  HG+E    HY C
Sbjct: 427 FEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSC 486

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           MV LLGR+G L EA  +IK MP +P+S VWGALL +CRVH   ++ E+AAK++ EL+P N
Sbjct: 487 MVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRN 546

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              Y+LL NIYA+   W     +R M+  RG+KK PG S IE+   VH  +AGD SHPQ 
Sbjct: 547 PGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQM 606

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
            +I  KL ++T ++K  GY+P    V  DV E+DKE+ +  HSEKLA+  GL+++ PG  
Sbjct: 607 PQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFP 666

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++++KNLR+C DCH + K +S    RE+ VRD  RFH FK G CSC DYW
Sbjct: 667 LQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 265/760 (34%), Positives = 402/760 (52%), Gaps = 97/760 (12%)

Query: 26  CESMHQL--KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLW 83
           CES +Q   K++H   +K        + N L+T    + G++ YA  VF  IP+P++  W
Sbjct: 16  CESQNQTQAKKLHCLILKTIKQPETFLSNNLIT-AYYKLGNLAYAHHVFDHIPQPNLFSW 74

Query: 84  NTM-------------------------------IKGYSRIDSHKNGVLIYLDMLK-SDV 111
           NT+                               I GY+   S  + V +Y  MLK + +
Sbjct: 75  NTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAM 134

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
             +  TF  +L   ++   V+ G++++  +LKFGF S VFV + L+  Y   G +  A+ 
Sbjct: 135 NLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKR 194

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF--------------------------- 204
            FD   + +VV  N M +G  R    +E+++LF                           
Sbjct: 195 YFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREA 254

Query: 205 ----GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
                EM   G      T   VL+AC  L  L  GK+ H YV       N+ + +AL DM
Sbjct: 255 LDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDM 314

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           Y+ C           +IK+ + +                     F +MP+++ + WTAM+
Sbjct: 315 YSKCR----------SIKSAETV---------------------FKRMPQKNVISWTAML 343

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            GY +     EA+ +F EMQ + + PD+FT+ S++++CANL +LE G         + + 
Sbjct: 344 VGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLI 403

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
           + I V NALI +Y KCG  E + R+F EM  +D+ +WTA++ G A  G  ++++ +F +M
Sbjct: 404 SFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERM 463

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           L   + PD VT++GVLSAC+  G+V++G +YF  M  +HGI P   H  C++DLLGRAG 
Sbjct: 464 LAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGR 523

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L EA   I NMP  P+ + W  LL +CRVH D E+ + AA  ++ L+P N A YVLL ++
Sbjct: 524 LEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSL 583

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YA+  +WD   +LR+ + D+ ++K PG S I+  G VH F A D+S P   +IY +L+++
Sbjct: 584 YASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKL 643

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
              +   GY+PD+S V  DV E +K + +  HSEKLA+AFGLI   PG+ IR++KNLR+C
Sbjct: 644 NYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVC 703

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            DCH   K +S +  RE++VRD  RFH FK G+CSC D+W
Sbjct: 704 GDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 152/335 (45%), Gaps = 34/335 (10%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L  C + ++    K+ H  + +    P   L N L   Y   G + +A  +F +I   +
Sbjct: 11  LLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPN 70

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-Q 340
           + SW  I++ Y   G +   +Q F+ MP RD V W   I GY       +A+ +++ M +
Sbjct: 71  LFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLK 130

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK----- 395
            + +  +  T  ++L  C+    ++LG  +   I K    +D+FVG+ L+DMY K     
Sbjct: 131 DAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIY 190

Query: 396 --------------------------CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
                                     CG +E++QR+F  +  +D  +WT MI GL  NG 
Sbjct: 191 DAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGL 250

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
             ++LDMF +M  A    D+ T+  VL+AC     + EG++  A   I+   + N     
Sbjct: 251 EREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHA-YVIRTDHKDNVFVGS 309

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
            +VD+  +   +  A  V K MP K N I W A+L
Sbjct: 310 ALVDMYSKCRSIKSAETVFKRMPQK-NVISWTAML 343



 Score = 47.0 bits (110), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 6/176 (3%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L S I +C ++  L+   Q H + +  GL++  TV N L+T    + G  + + ++F ++
Sbjct: 374 LGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITL-YGKCGSTENSHRLFTEM 432

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  W  ++ GY++       + ++  ML   ++PD  TF  +L   +R   VE G 
Sbjct: 433 NIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGL 492

Query: 136 ELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARG-IFDVSYKDDVVTWNAMFS 189
           +    ++K  G    V     +I      G ++ AR  I ++    DVV W  + S
Sbjct: 493 QYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLS 548


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/622 (38%), Positives = 364/622 (58%), Gaps = 36/622 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALIS--TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H +VLK G +S  F+   L+      L   +D A  +F  +   DV   N +  G  
Sbjct: 22  KQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRGLY 81

Query: 193 RVKQFDETRKLFGEMERKGVLPT-SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
              +  ++   F EM R    P  S +   ++ A A L+ + VG + H       +  +L
Sbjct: 82  ESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHL 141

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT--------------------- 290
            +   L  MY  CG +GFA ++F  +   + I+W A+VT                     
Sbjct: 142 FVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVR 201

Query: 291 ----------GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
                     GY   G++++AR+ F +MP +D V W+ MI G+     F EA + FRE+Q
Sbjct: 202 NLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQ 261

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
              +RP+E ++  +L+ACA  GALE G+ +  +I+K+ +   + V NAL+D Y KCG+V 
Sbjct: 262 RKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVL 321

Query: 401 KAQRVF-REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
            AQ VF R M  ++  +WT+M+  LA++GHG++++ +F +M  + I PDE+ ++ +L AC
Sbjct: 322 MAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYAC 381

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H G+V++G EYF  M   + IEP+  HYGCMVDL GRAG L +A E +  MP+   +I+
Sbjct: 382 SHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAII 441

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           W  LLGAC +H D ++AE   +++ ELDP+N + +VLL N YA   +W +   +R+ + +
Sbjct: 442 WRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTE 501

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV-GYMPDISEVFL 638
           + I KTPG SMIE++ +++ F+AG K +  T+E Y KL E+   L+   GY+P+I  V  
Sbjct: 502 QRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLH 561

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
           D+ EE+KE +V  HSEKLA+AFG+     G TIRIVKNLR+C DCH + KL+S +Y  E+
Sbjct: 562 DIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEI 621

Query: 699 IVRDKTRFHHFKHGSCSCKDYW 720
           +VRD++RFH FK G CSC+DYW
Sbjct: 622 VVRDRSRFHSFKDGYCSCRDYW 643



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 131/493 (26%), Positives = 224/493 (45%), Gaps = 107/493 (21%)

Query: 13  LTQETPL-ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD-MKYACK 70
           +++  PL +S +  C+S+   KQIH+  +KLGL ++P +  KL+  C     D + YAC+
Sbjct: 1   MSKTEPLCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACR 60

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP-DNYTFPFLLKGFTRDI 129
           +FR  P P V + NT+I+G    D  ++ +L +++M ++   P D+++F F++K      
Sbjct: 61  LFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLR 120

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA--- 186
           +V  G +LHC  L  G D+ +FV   LIS Y  CG V  AR +FD   + + + WNA   
Sbjct: 121 SVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVT 180

Query: 187 ----------------------------MFSGYKRVKQFDETRKLFGEM----------- 207
                                       M +GY +  + +  R++F EM           
Sbjct: 181 ACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTM 240

Query: 208 --------------------ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
                               +RKG+ P   ++  VLSACA+   L+ GK  H ++++  +
Sbjct: 241 IVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGL 300

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKN-KDVISWTAIVTGYINRGQVDMARQYFD 306
              + + NAL D Y+ CG +  A  +F  I N ++++SWT+++      G  +       
Sbjct: 301 AWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGE------- 353

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
                                   EA+ +F +M+ S IRPDE   +S+L AC++ G +E 
Sbjct: 354 ------------------------EAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQ 389

Query: 367 GEWVKTYIDKNK----VKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
           G     Y DK K    ++  I     ++D+Y + G ++KA     +M +      W  ++
Sbjct: 390 G---CEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLL 446

Query: 422 VGLAINGHGDKSL 434
              ++  HGD  L
Sbjct: 447 GACSM--HGDVKL 457



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 147/338 (43%), Gaps = 44/338 (13%)

Query: 47  NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM 106
           N    N +VT CC   GDMK   ++F  +P  ++  WN M+ GY++    +    ++L+M
Sbjct: 171 NAIAWNAMVTACC-RGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEM 229

Query: 107 -LKSDV------------------------------RPDNYTFPFLLKGFTRDIAVEFGK 135
            +K DV                              RP+  +   +L    +  A+EFGK
Sbjct: 230 PMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGK 289

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKRV 194
            LH  + K G    V V NAL+ TY  CG V MA+ +F+ +  + ++V+W +M +     
Sbjct: 290 ILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMH 349

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLIL 253
              +E   +F +ME  G+ P  +  + +L AC+    ++ G      +K    I P++  
Sbjct: 350 GHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEH 409

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPE-- 310
              + D+Y   G++  A E    +      I W  ++      G V +A Q  +++ E  
Sbjct: 410 YGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELD 469

Query: 311 ----RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                D+VL +   + Y    ++++A ++ R M    I
Sbjct: 470 PNNSSDHVLLS---NAYAVAGKWKDAASVRRSMTEQRI 504


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/468 (47%), Positives = 304/468 (64%), Gaps = 1/468 (0%)

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +++ +  MYAA G++  +   F  I   DV+  TA+V      G VD AR  FD MP+RD
Sbjct: 151 VQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRD 210

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
           +V W+AMI GY+ V R REAL LF EM ++     E T+VS+LTACA +G L+ G+WV  
Sbjct: 211 HVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHW 270

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           Y+    ++  I +G AL+DMY KCG V  A  VF  M  ++ +TWT+ + GLA+NG G +
Sbjct: 271 YVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTE 330

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
            L +F +M  A I P+ V++V VL  C+  G+VDEGR  F  M  ++G++P   HYGCMV
Sbjct: 331 CLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMD-KYGVDPWPEHYGCMV 389

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DL GRAG L++A+  I +MPM+P+  VWGALL A R+H   ++ + A  ++L ++ +N+A
Sbjct: 390 DLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDA 449

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            +V L NIYA    W     +R M+  +G+KK PG S IE++G VHEF  G + HP+  E
Sbjct: 450 AHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNE 509

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I L L EM   L+  GY  +  EV  D+ EE+KE A+  HSEKLA+AFGLI     V IR
Sbjct: 510 IELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIR 569

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IVKNLR+C+DCHR  KLVS V++RE+++RD+ RFHHFK G CSC+DYW
Sbjct: 570 IVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 184/440 (41%), Gaps = 88/440 (20%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCS--EKGDMKYACKVFRKIPRPSVCL-WNTMI 87
            L+ +H+  +  G L +P+    L  F  S      + YA  V  +  RP+  L  N  I
Sbjct: 21  HLRALHAHLVVSGRLASPS---HLAAFLASLASSNHLSYARLVLPQ--RPATLLAHNAFI 75

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT---------RDIAVEFGKEL- 137
           +  +R          + D+    + PD+Y+  FL++  T         + ++ E    L 
Sbjct: 76  RALARGPRPCLAFAAFRDL---PLPPDHYSLNFLVRAATALVASAAEEKHVSAEVNARLQ 132

Query: 138 ----HCHVLKFGFDSSVFVQNALISTYC--------------------LC---------- 163
               H   +++G  +   VQ+ ++S Y                     +C          
Sbjct: 133 AVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAA 192

Query: 164 -GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
            G+VD AR +FD   + D V W+AM +GY  V +  E   LF EM   G      T+V V
Sbjct: 193 GGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSV 252

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L+ACA++  LD GK  H YV+   +  ++ L  AL DMY+ CG +  A+E+F ++  ++V
Sbjct: 253 LTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNV 312

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
            +WT+ V+G    G                                  E L LF+ M+ +
Sbjct: 313 YTWTSAVSGLAMNGMGT-------------------------------ECLQLFKRMEGA 341

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
            I+P+  + V++L  C+  G ++ G      +DK  V         ++D+Y + G ++ A
Sbjct: 342 GIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDA 401

Query: 403 QRVFREM-LRKDKFTWTAMI 421
                +M +   +  W A++
Sbjct: 402 ISFINDMPMEPHEGVWGALL 421



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 106/247 (42%), Gaps = 1/247 (0%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD+  A  +F  +P+     W+ MI GY  +   +  ++++ +ML +       T   +L
Sbjct: 194 GDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVL 253

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
               +   ++ GK +H +V   G   S+ +  AL+  Y  CG V  A  +F+   + +V 
Sbjct: 254 TACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVY 313

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           TW +  SG        E  +LF  ME  G+ P  V+ V VL  C+    +D G+     +
Sbjct: 314 TWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM 373

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDMA 301
            +  + P       + D+Y   G +  A+    ++  +     W A++        VD+ 
Sbjct: 374 DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLG 433

Query: 302 RQYFDQM 308
           +   D++
Sbjct: 434 KYALDKL 440



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 39/173 (22%)

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD------ 435
           D  V + ++ MY   GDV  ++  F E+   D    TAM+  LA  G  D + D      
Sbjct: 148 DPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMP 207

Query: 436 -------------------------MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR- 469
                                    +F +ML A     E T V VL+AC   G +D G+ 
Sbjct: 208 QRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKW 267

Query: 470 --EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
              Y     +Q  I+   A    +VD+  + G +  A+EV ++M  + N   W
Sbjct: 268 VHWYVRSRGMQMSIKLGTA----LVDMYSKCGAVVTAMEVFESMAER-NVYTW 315


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/721 (35%), Positives = 394/721 (54%), Gaps = 42/721 (5%)

Query: 30  HQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP--SVCLWNTMI 87
           H  + I  + + L +    T  +     C +  G + +A KVF + P P  +V  WN M+
Sbjct: 3   HSGRAILRRCMMLQVRLQCTTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMV 62

Query: 88  KGYSRIDSHKNGVLIYLDMLKS-------------------------DVRPDN--YTFPF 120
             Y      +  +L++  M +                          D  PD    ++  
Sbjct: 63  AAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTS 122

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +++G+ R+  V   + L  H+      S   +   L+      G VD AR +FD+  + D
Sbjct: 123 MVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQE----GRVDDARKLFDMMPEKD 178

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           VV    M  GY    + DE R LF EM ++ V    VT   ++S  A+   +DV ++   
Sbjct: 179 VVAVTNMIGGYCEEGRLDEARALFDEMPKRNV----VTWTAMVSGYARNGKVDVARKLFE 234

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
            + E     N +   A+   Y   G M  A  +F  +  K V+    ++ G+   G+VD 
Sbjct: 235 VMPE----RNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDK 290

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           AR+ F  M ERD   W+AMI  Y R     EAL LFR MQ   +  +  +++S+L+ C +
Sbjct: 291 ARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVS 350

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           L +L+ G+ V   + +++   D++V + LI MY KCG++ +A++VF     KD   W +M
Sbjct: 351 LASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSM 410

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I G + +G G+++L++F  M  + + PD+VT++GVLSAC+++G V EG E F  M  ++ 
Sbjct: 411 ITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQ 470

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           +EP   HY C+VDLLGRA  +NEA+++++ MPM+P++IVWGALLGACR H   ++AE+A 
Sbjct: 471 VEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAV 530

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
           +++ +L+P N   YVLL N+YA   RW +   LR+ I  R + K PGCS IE+   VH F
Sbjct: 531 EKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMF 590

Query: 601 VAGD-KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA 659
             GD K HP+   I   L+++   L+  GY PD S V  DV EE+K  ++  HSEKLA+A
Sbjct: 591 TGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVA 650

Query: 660 FGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
           +GL+    G+ IR++KNLR+C DCH   KL++ V  RE+I+RD  RFHHFK G CSCKDY
Sbjct: 651 YGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDY 710

Query: 720 W 720
           W
Sbjct: 711 W 711



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 6/185 (3%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           LIS +  C S+  L   KQ+H+Q ++     +  V + L+T    + G++  A +VF + 
Sbjct: 341 LISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYV-KCGNLVRAKQVFNRF 399

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P   V +WN+MI GYS+    +  + ++ DM  S V PD+ TF  +L   +    V+ G 
Sbjct: 400 PLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGL 459

Query: 136 EL-HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKR 193
           EL      K+  +  +     L+       +V+ A  + + +  + D + W A+    + 
Sbjct: 460 ELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRT 519

Query: 194 VKQFD 198
             + D
Sbjct: 520 HMKLD 524


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/685 (34%), Positives = 390/685 (56%), Gaps = 33/685 (4%)

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           C+   +++   K+ +      V  W  ++ GY++       + ++ +ML   ++PD    
Sbjct: 282 CAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAV 341

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             +L   +     +    LH +V++ GF+S+VFV  +LI  Y  CG +  A  +F     
Sbjct: 342 VKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIV 401

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            DVV W++M + Y    +  E  ++F +M         + ++  +++C ++  +    + 
Sbjct: 402 RDVVIWSSMIAAYGIHGRGGEALEIFDQM---------IQVMQGITSCYQI-SMQPQVQP 451

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIF-------GNIKNKDVISW------ 285
              +  C +  ++  +     M A    +G   EIF        ++   ++ ++      
Sbjct: 452 PLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDS 511

Query: 286 ---TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
              T     Y++  ++D A   F+ +P     LW  MI G+    RF  +L L+ +M   
Sbjct: 512 RILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEK 571

Query: 343 NIRPD-------EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
            ++PD         +I+S+L AC NLGAL  GEW  +Y+ +   + DI V  A++DMY K
Sbjct: 572 GLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSK 631

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG ++ A+ +F E   KD   W+AMI    I+GHG K++D+F QM++A + P  VT+  V
Sbjct: 632 CGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCV 691

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           LSAC+H+G+++EG+ YF  MT +  I    ++Y CMVDLLGRAG L+EA+++I+NMP++P
Sbjct: 692 LSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEP 751

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           ++ +WG+LLGACR+H + ++AE  A  +  LDP +   +VLL NIYAA +RW+   ++R+
Sbjct: 752 DASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRK 811

Query: 576 MILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
           M+  RG  K  G S++E +  VH+F  GD+SHPQ +++Y KL+E+ + +K +GY+P    
Sbjct: 812 MMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDF 871

Query: 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
           V  D+ EE KE A+  HSE+LA+AFGLI++ PG T+RI KNLR+C DCH   KL+S + +
Sbjct: 872 VLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVN 931

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           R ++VRD  RFH F+ G CSC DYW
Sbjct: 932 RVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 211/464 (45%), Gaps = 78/464 (16%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTN---PTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L+   + C +   + Q+HSQ  K G+L +    T  N L   C S    ++ A KVF + 
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCAS----LQAARKVFDET 62

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGV-LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           P P+V LWN+ ++ Y R    +  + L +L +  +   PDN+T P  LK       +E G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 135 KELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           K +H    K     S +FV +AL+  Y  CG++  A  +F+   + D V W +M +GY++
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
               +E   LF +M              V+  C                       +L L
Sbjct: 183 NNDPEEALALFSQM--------------VMMDCFD--------------------GDLPL 208

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE--- 310
            N+L ++YA  G    A  +F  +  KDVISW+ ++  Y N    + A   F +M E   
Sbjct: 209 VNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRF 268

Query: 311 --------------------------------RDYVLWTAMIDGYLRVNRFREALTLFRE 338
                                           +D V W A++ GY +     +++ +FR 
Sbjct: 269 EPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRN 328

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M +  I+PD   +V IL A + LG  +    +  Y+ ++   +++FVG +LI++Y KCG 
Sbjct: 329 MLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGS 388

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           +  A ++F+ M+ +D   W++MI    I+G G ++L++F QM++
Sbjct: 389 LGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQ 432



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 193/447 (43%), Gaps = 76/447 (17%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           +LH  V K G     F    L S Y  C  +  AR +FD +   +V  WN+    Y R K
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 196 QFDETRKLFGEME-RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLIL 253
           Q++ET +LF  M    G  P + TI + L ACA L+ L++GK  H + K+  +I  ++ +
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFV 141

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG---------------------- 291
            +AL ++Y+ CG+MG AL++F   +  D + WT++VTG                      
Sbjct: 142 GSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDC 201

Query: 292 --------------YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
                         Y   G   +A   F +MPE+D + W+ MI  Y       EAL LF 
Sbjct: 202 FDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFH 261

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
           EM      P+  T+VS L ACA    LE G+     I K  V  D+    AL+  Y + G
Sbjct: 262 EMIEKRFEPNSVTVVSALQACAVSRNLEEGK----KIHKIAVWKDVVSWVALLSGYAQNG 317

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
              K+  VFR ML                                  I PD V  V +L+
Sbjct: 318 MAYKSMGVFRNMLSD-------------------------------GIQPDAVAVVKILA 346

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           A +  G+  +         ++ G   N      +++L  + G L +A+++ K M ++ + 
Sbjct: 347 ASSELGIFQQAL-CLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DV 404

Query: 518 IVWGALLGACRVH-RDAEMAEMAAKQI 543
           ++W +++ A  +H R  E  E+  + I
Sbjct: 405 VIWSSMIAAYGIHGRGGEALEIFDQMI 431



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 136/288 (47%), Gaps = 15/288 (5%)

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG----YINRGQVDMARQYFDQMPERD 312
           L D++ AC       ++   +    ++  T   T     Y     +  AR+ FD+ P  +
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELGEWVK 371
             LW + +  Y R  ++ E L LF  M  T+   PD FTI   L ACA L  LELG+ + 
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 372 TYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
            +  KN ++ +D+FVG+AL+++Y KCG + +A +VF E  R D   WT+M+ G   N   
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDP 186

Query: 431 DKSLDMFSQMLRASIIPDEVTYV-GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
           +++L +FSQM+       ++  V  +L+    TG        F+ M      E +   + 
Sbjct: 187 EEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP-----EKDVISWS 241

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMK---PNSIVWGALLGACRVHRDAE 534
            M+         NEAL +   M  K   PNS+   + L AC V R+ E
Sbjct: 242 TMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLE 289


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/700 (35%), Positives = 394/700 (56%), Gaps = 35/700 (5%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           ++ C ++   ++IH    KLG   N  V   L+    S  G    A  +F  +P   +  
Sbjct: 225 LKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMY-SRFGFTGIARSLFDDMPFRDMGS 283

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN MI G  +  +    + +  +M    ++ +  T   +L    +   +     +H +V+
Sbjct: 284 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVI 343

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K G +  +FV NALI+ Y   G ++ AR  F   +  DVV+WN++ + Y++         
Sbjct: 344 KHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHG 403

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMY 261
            F +M+  G  P  +T+V + S  A+ +D    +  H ++ +   ++ ++++ NA+ DMY
Sbjct: 404 FFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMY 463

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           A                                 G +D A + F+ +  +D + W  +I 
Sbjct: 464 AKL-------------------------------GLLDSAHKVFEIILVKDVISWNTLIT 492

Query: 322 GYLRVNRFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
           GY +     EA+ +++ M+    I P++ T VSIL A A++GAL+ G  +   + K  + 
Sbjct: 493 GYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLH 552

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D+FV   LID+Y KCG +  A  +F ++ ++   TW A+I    I+GH +K+L +F +M
Sbjct: 553 LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 612

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           L   + PD VT+V +LSAC+H+G V+EG+  F  M  ++GI+P+  HYGCMVDLLGRAG+
Sbjct: 613 LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGY 671

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L  A   IK+MP++P++ +WGALLGACR+H + E+ + A+ ++ E+D  N   YVLL NI
Sbjct: 672 LEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNI 731

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YA   +W+   ++R +  +RG+KKTPG S IE+N  V  F  G++SHP+ KEIY +L  +
Sbjct: 732 YANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVL 791

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
           T+ +K +GY+PD S V  DV E++KE  +  HSE+LA+AFG+IS+ P   IRI KNLR+C
Sbjct: 792 TAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVC 851

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            DCH   K +S +  RE++VRD  RFHHFK G CSC DYW
Sbjct: 852 GDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 155/574 (27%), Positives = 271/574 (47%), Gaps = 53/574 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K +H+  +  G + +  +  +LV    +  GD+  +   F +IP+  V  WN+MI  Y  
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLY-ANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVH 194

Query: 93  IDSHKNGV-LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
                  +   Y  +L S++RPD YTFP +LK     +    G+ +HC   K GF  +VF
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVF 251

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V  +LI  Y   G   +AR +FD     D+ +WNAM SG  +     +   +  EM  +G
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           +    VT+V +L  C +L D+      H YV +  +  +L + NAL +MYA  G +  A 
Sbjct: 312 IKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDAR 371

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           + F  +   DV+SW +I+  Y          Q  D +    +                  
Sbjct: 372 KAFQQMFITDVVSWNSIIAAY---------EQNDDPVTAHGF------------------ 404

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI-DKNKVKNDIFVGNALI 390
               F +MQ +  +PD  T+VS+ +  A     +    V  +I  +  +  D+ +GNA++
Sbjct: 405 ----FVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVV 460

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA-SIIPDE 449
           DMY K G ++ A +VF  +L KD  +W  +I G A NG   ++++++  M     IIP++
Sbjct: 461 DMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQ 520

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
            T+V +L A  H G + +G      + I+  +  +     C++D+ G+ G L +A+ +  
Sbjct: 521 GTWVSILPAYAHVGALQQGMRIHGRV-IKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFY 579

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNRW 567
            +P + +S+ W A++    +H  AE       ++L+  + PD    +V   ++ +AC+  
Sbjct: 580 QVPQE-SSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPD----HVTFVSLLSACSHS 634

Query: 568 DNFRELR---QMILDRGIK---KTPGCSMIEMNG 595
               E +   +++ + GIK   K  GC M+++ G
Sbjct: 635 GFVEEGKWCFRLMQEYGIKPSLKHYGC-MVDLLG 667



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 179/408 (43%), Gaps = 39/408 (9%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           F FL    T+     F K LH  ++  G   S+F+   L++ Y   G+V ++R  FD   
Sbjct: 122 FNFLFDSSTK---TPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIP 178

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGK 236
           + DV TWN+M S Y     F E    F ++     + P   T   VL AC  L D   G+
Sbjct: 179 QKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GR 235

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
           R H +  +     N+ +  +L  MY+  G  G A  +F ++  +D+ SW A+++G I  G
Sbjct: 236 RIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 295

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
                                             +AL +  EM+   I+ +  T+VSIL 
Sbjct: 296 NA-------------------------------AQALDVLDEMRLEGIKMNFVTVVSILP 324

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
            C  LG +     +  Y+ K+ ++ D+FV NALI+MY K G++E A++ F++M   D  +
Sbjct: 325 VCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVS 384

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W ++I     N     +   F +M      PD +T V + S    +      R     + 
Sbjct: 385 WNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIM 444

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
            +  +  +      +VD+  + G L+ A +V + + +K + I W  L+
Sbjct: 445 RRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVK-DVISWNTLI 491


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/757 (33%), Positives = 399/757 (52%), Gaps = 70/757 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H Q IK G L + +V   LV     +  + K    VF ++   +V  W T+I GY+R
Sbjct: 117 RQLHCQCIKFGFLDDVSVGTSLVD-TYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYAR 175

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              ++  + +++ M     +P+++TF   L     +     G ++H  V+K G D ++ V
Sbjct: 176 NSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 235

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            N+LI+ Y  CG V  AR +FD +    VVTWN+M SGY       E   +F  M    V
Sbjct: 236 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHV 295

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAH--------------------------------R 240
             +  +   ++  CA LK+L   ++ H                                R
Sbjct: 296 RLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALR 355

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV----------------IS 284
             KE   + N++   A+   +        A+ +F  +K K V                IS
Sbjct: 356 LFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVIS 415

Query: 285 -------------------WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
                               TA++  Y+  G+VD A + F  +  +D V W+AM+ GY +
Sbjct: 416 PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQ 475

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACA-NLGALELGEWVKTYIDKNKVKNDIF 384
                 A+ +F E+    ++P+EFT  SIL  CA    ++  G+    +  K+++ + + 
Sbjct: 476 AGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLC 535

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           V +AL+ MY K G +E A+ VF+    KD  +W +MI G A +G   K+LD+F +M +  
Sbjct: 536 VSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRK 595

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           +  D VT++GV +ACTH G+V+EG +YF  M     I P + H  CMVDL  RAG L +A
Sbjct: 596 VKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKA 655

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
           ++VI NMP    S +W  +L ACRVH+  E+  +AA++I+ + P++ A YVLL N+YA  
Sbjct: 656 MKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAES 715

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
             W    ++R+++ +R +KK PG S IE+    + F+AGD+SHP   +IY+KL+++++ L
Sbjct: 716 GDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRL 775

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           K +GY PD S V  D+ +E KE  + QHSE+LA+AFGLI++  G  + I+KNLR+C DCH
Sbjct: 776 KDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCH 835

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKH-GSCSCKDYW 720
            + KL++ + +RE++VRD  RFHHF   G CSC D+W
Sbjct: 836 VVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/598 (23%), Positives = 251/598 (41%), Gaps = 92/598 (15%)

Query: 45  LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYL 104
           L N     ++  F  +    + YA  +F K P      + +++ G+SR    +    ++L
Sbjct: 27  LGNLKPNFRIYCFGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFL 86

Query: 105 DMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCG 164
           ++    +  D   F  +LK         FG++LHC  +KFGF   V V  +L+ TY    
Sbjct: 87  NIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGS 146

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
                R +FD   + +VVTW  + SGY R    +E   LF  M+ +G  P S T    L 
Sbjct: 147 NFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALG 206

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
             A+      G + H  V +  +   + + N+L ++Y  CG +  A  +F   + K V++
Sbjct: 207 VLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVT 266

Query: 285 WTAIVTGYINRG---------------QVDMARQYFDQMPER------------------ 311
           W ++++GY   G                V ++   F  + +                   
Sbjct: 267 WNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVV 326

Query: 312 ------DYVLWTAMIDGYLRVNRFREALTLFRE--------------------------- 338
                 D  + TA++  Y +     +AL LF+E                           
Sbjct: 327 KYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAV 386

Query: 339 -----MQTSNIRPDEFTIVSILTACANLGALEL-GEWVKTYIDKNKVKNDIFVGNALIDM 392
                M+   +RP+EFT   ILTA   +   E+  + VKT  +++       VG AL+D 
Sbjct: 387 GLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSST-----VGTALLDA 441

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y K G V++A +VF  +  KD   W+AM+ G A  G  + ++ +FS++ +  + P+E T+
Sbjct: 442 YVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTF 501

Query: 453 VGVLSACTH-TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
             +L+ C   T  + +G++ F    I+  ++ +      ++ +  + GH+  A EV K  
Sbjct: 502 SSILNVCAATTASMGQGKQ-FHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQ 560

Query: 512 PMKPNSIVWGALLGACRVHRDAEMA-----EMAAKQILELDPDNEAVYVLLCNIYAAC 564
             K + + W +++     H  A  A     EM  +++ ++D       V    ++AAC
Sbjct: 561 REK-DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV-KMDS------VTFIGVFAAC 610



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 162/344 (47%), Gaps = 19/344 (5%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           S +    P+ISP E          +H+Q +K     + TV   L+     + G +  A K
Sbjct: 405 SVILTALPVISPSE----------VHAQVVKTNYERSSTVGTALLD-AYVKLGKVDEAAK 453

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF  I    +  W+ M+ GY++    +  + I+ ++ K  V+P+ +TF  +L       A
Sbjct: 454 VFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTA 513

Query: 131 -VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            +  GK+ H   +K   DSS+ V +AL++ Y   G ++ A  +F    + D+V+WN+M S
Sbjct: 514 SMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMIS 573

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR-YVKECKIV 248
           GY +  Q  +   +F EM+++ V   SVT + V +AC     ++ G++     V++CKI 
Sbjct: 574 GYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIA 633

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKN-KDVISWTAIVTGYINRGQVDMAR----Q 303
           P     + + D+Y+  G++  A+++  N+ N      W  I+       + ++ R    +
Sbjct: 634 PTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEK 693

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
               +PE D   +  + + Y     ++E   + + M   N++ +
Sbjct: 694 IIAMIPE-DSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKE 736


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/684 (36%), Positives = 370/684 (54%), Gaps = 64/684 (9%)

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTR 127
           ++F  +P+     +N ++ G+SR  +H      Y+ +L+ +  VRP   T   ++   + 
Sbjct: 98  RLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASA 157

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
                 G+++HC +L+ GF +  F  + L+  Y   G +  AR +FD     +VV  N M
Sbjct: 158 LGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTM 217

Query: 188 FSGYKRVKQFDETRKLFGEMERK-------------------------------GVLPTS 216
            +G  R K   E R LF  +E +                               GV    
Sbjct: 218 ITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQ 277

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T   +L+AC  L  L+ GK+ H Y+       N+ + +AL DMY+ C  +  A  +F  
Sbjct: 278 YTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRR 337

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           +  K++IS                               WTAMI GY +     EA+ +F
Sbjct: 338 MMWKNIIS-------------------------------WTAMIVGYGQNGCGEEAVRVF 366

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            EMQ   I+PD+FT+ S++++CANL +LE G         + ++  + V NAL+ +Y KC
Sbjct: 367 SEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKC 426

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G +E A R+F EM   D+ +WTA+++G A  G   +++D+F +ML   + PD VT++GVL
Sbjct: 427 GSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVL 486

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+ +G+VD+GR YF  M   H I P + HY CM+DL  R+G L +A E IK MP  P+
Sbjct: 487 SACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPD 546

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           +  W  LL ACR+  D E+ + AA+ +L+LDP N A YVLLC+++A+   W++  +LR+ 
Sbjct: 547 AFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRG 606

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + DR +KK PGCS I+    VH F A D+SHP ++ IY KL  + S +   GY PD+S V
Sbjct: 607 MRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSV 666

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             DV + +K   +  HSEKLA+AFGLI   P + IRIVKNLR+CVDCH   K +S +  R
Sbjct: 667 LHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGR 726

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           +++VRD  RFH F +G CSC D+W
Sbjct: 727 DILVRDAVRFHKFSNGICSCGDFW 750



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 222/454 (48%), Gaps = 41/454 (9%)

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           S  ++ N L++ Y   G +  AR +FD     ++VT N++ S   R     +  +LF  +
Sbjct: 44  SPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSL 103

Query: 208 ERK---------------------------------GVLPTSVTIVLVLSACAKLKDLDV 234
            ++                                 GV P+ +T+  V+   + L D  +
Sbjct: 104 PQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRAL 163

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G++ H  +            + L DMYA  G +G A  +F  ++ K+V+    ++TG + 
Sbjct: 164 GRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLR 223

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
              V  AR  F+ + ERD + WT M+ G  +     EAL +FR M+   +  D++T  SI
Sbjct: 224 CKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSI 283

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           LTAC  L ALE G+ +  YI +   ++++FVG+AL+DMY KC  V  A+ VFR M+ K+ 
Sbjct: 284 LTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNI 343

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +WTAMIVG   NG G++++ +FS+M R  I PD+ T   V+S+C +   ++EG ++   
Sbjct: 344 ISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHC- 402

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL-LGACRVHRDA 533
           + +  G+ P       +V L G+ G + +A  +   M    + + W AL +G  +  +  
Sbjct: 403 LALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVMGYAQFGKAK 461

Query: 534 EMAEMAAKQILE-LDPDNEAVYVLLCNIYAACNR 566
           E  ++  K + + + PD     V    + +AC+R
Sbjct: 462 ETIDLFEKMLSKGVKPDG----VTFIGVLSACSR 491



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           ++ + KQIH+   +     N  V + LV    S+   ++ A  VFR++   ++  W  MI
Sbjct: 292 ALEEGKQIHAYITRTCYEDNVFVGSALVDMY-SKCRSVRLAEAVFRRMMWKNIISWTAMI 350

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
            GY +    +  V ++ +M +  ++PD++T   ++       ++E G + HC  L  G  
Sbjct: 351 VGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLR 410

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
             V V NAL++ Y  CG ++ A  +FD     D V+W A+  GY +  +  ET  LF +M
Sbjct: 411 PYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKM 470

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACGE 266
             KGV P  VT + VLSAC++   +D G+   H   ++  IVP       + D+Y+  G 
Sbjct: 471 LSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGW 530

Query: 267 MGFALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTAM 319
           +  A E    + +  D   W  +++    RG +++ +   + + + D      YVL  +M
Sbjct: 531 LKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSM 590



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 86/228 (37%), Gaps = 47/228 (20%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L S I +C ++  L+   Q H   +  GL    TV N LVT    + G ++ A ++F ++
Sbjct: 381 LGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTL-YGKCGSIEDAHRLFDEM 439

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  W  ++ GY++    K  + ++  ML   V+PD  TF  +L   +R        
Sbjct: 440 SFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRS------- 492

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD-DVVT----WNAMFSG 190
                                       G VD  R  F    +D D+V     +  M   
Sbjct: 493 ----------------------------GLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDL 524

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           Y R     +  +   +M R    P +     +LSAC    D+++GK A
Sbjct: 525 YSRSGWLKQAEEFIKQMPR---CPDAFGWATLLSACRLRGDMEIGKWA 569


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/685 (36%), Positives = 377/685 (55%), Gaps = 47/685 (6%)

Query: 41  KLGLL-TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNG 99
           K+GL  T+  V + L+    +  GD+  A KVF  +   +V +W  +I  Y + +  +  
Sbjct: 180 KMGLWGTDIAVGSALIDML-ARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEA 238

Query: 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
           V I+LD L+    PD YT   ++   T   +V  G +LH   L+ GF S   V   L+  
Sbjct: 239 VEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDM 298

Query: 160 YCLCG---EVDMARGIFDVSYKDDVVTWNAMFSGYKRVK-QFDETRKLFGEMERKGVLPT 215
           Y        +D A  +F+   K+DV++W A+ SGY +   Q ++   LFGEM  + + P 
Sbjct: 299 YAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPN 358

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
            +T   +L ACA + D D G++ H +V +        + NAL  MYA  G M        
Sbjct: 359 HITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCM-------- 410

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
                                  + AR+ F+Q+ ER  +  + + +G       R+A  L
Sbjct: 411 -----------------------EEARRVFNQLYERSMI--SCITEG-------RDA-PL 437

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
              +   ++     T  S+++A A++G L  G+ +     K    +D FV N+L+ MY +
Sbjct: 438 DHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSR 497

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG +E A R F E+  ++  +WT+MI GLA +G+ +++L +F  M+   + P++VTY+ V
Sbjct: 498 CGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAV 557

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           LSAC+H G+V EG+EYF  M   HG+ P   HY CMVDLL R+G + EALE I  MP+K 
Sbjct: 558 LSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKA 617

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           +++VW  LLGACR H + E+ E+AAK ++EL+P + A YVLL N+YA    WD    +R 
Sbjct: 618 DALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRS 677

Query: 576 MILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
            + D  + K  G S +E+    HEF AGD SHP+ ++IY KLD +  ++K +GY+PD S 
Sbjct: 678 AMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSI 737

Query: 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
           V  D+ +E KE+ + QHSEK+A+AFGLI++     IRI KNLR+C DCH   K +S    
Sbjct: 738 VLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATR 797

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           RE+I+RD  RFH  K G CSC +YW
Sbjct: 798 REIILRDSNRFHRMKDGECSCGEYW 822



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 141/569 (24%), Positives = 244/569 (42%), Gaps = 72/569 (12%)

Query: 33  KQIHSQTIKLGLL-TNPTVQNKLVTFCCSEKGDMKYACKVFRKI-PRPSVCLWNTMIKGY 90
           + +H + ++  LL  +  V N L+T   S  G +  A  VF  +     +  W  M    
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLY-SRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL-------- 142
           +R  + +  +L+  +ML+S + P+ YT   +           F  EL+C V         
Sbjct: 127 ARNGAERESLLLIGEMLESGLLPNAYTLCAVAHAC-------FPHELYCLVGGVVLGLVH 179

Query: 143 KFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           K G + + + V +ALI      G++  AR +FD   +  VV W  + S Y + +  +E  
Sbjct: 180 KMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAV 239

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
           ++F +    G  P   T+  ++SAC +L  + +G + H          +  +   L DMY
Sbjct: 240 EIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMY 299

Query: 262 AACG---EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           A       M +A ++F  ++  DVISWTA+++GY+  G  +                   
Sbjct: 300 AKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQE------------------- 340

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
                       + + LF EM   +I+P+  T  SIL ACAN+   + G  V  ++ K+ 
Sbjct: 341 -----------NKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSN 389

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
                 VGNAL+ MY + G +E+A+RVF ++  +   +         I    D  LD   
Sbjct: 390 QAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIS--------CITEGRDAPLD--H 439

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           ++ R  +     T+  ++SA    GM+ +G++  A MT++ G   +      +V +  R 
Sbjct: 440 RIGRMDMGISSSTFASLISAAASVGMLTKGQQLHA-MTLKAGFGSDRFVSNSLVSMYSRC 498

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLL 557
           G+L +A      +  + N I W +++     H  AE A  +    IL     N+  Y+  
Sbjct: 499 GYLEDACRSFNELKDR-NVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIA- 556

Query: 558 CNIYAACNRWDNFRE----LRQMILDRGI 582
             + +AC+     RE     R M  D G+
Sbjct: 557 --VLSACSHVGLVREGKEYFRSMQRDHGL 583



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 181/392 (46%), Gaps = 46/392 (11%)

Query: 131 VEFGKELHCHVLKFGF-DSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMF 188
           +  G+ LH  +L+    D    V N+L++ Y  CG V  AR +FD +    D+V+W AM 
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMA 123

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           S   R     E+  L GEM   G+LP + T+  V  AC                      
Sbjct: 124 SCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHAC---------------------F 162

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
           P+ +       +     +MG    ++G     D+   +A++      G +  AR+ FD +
Sbjct: 163 PHELYCLVGGVVLGLVHKMG----LWGT----DIAVGSALIDMLARNGDLASARKVFDGL 214

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
            E+  V+WT +I  Y++     EA+ +F +       PD +T+ S+++AC  LG++ LG 
Sbjct: 215 IEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGL 274

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK----AQRVFREMLRKDKFTWTAMIVGL 424
            + +   +    +D  V   L+DMY K  ++E+    A +VF  M + D  +WTA+I G 
Sbjct: 275 QLHSLALRMGFASDACVSCGLVDMYAK-SNIEQAMDYANKVFERMRKNDVISWTALISGY 333

Query: 425 AING-HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
             +G   +K + +F +ML  SI P+ +TY  +L AC +    D GR+  A     H I+ 
Sbjct: 334 VQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHA-----HVIKS 388

Query: 484 NEAHY----GCMVDLLGRAGHLNEALEVIKNM 511
           N+A        +V +   +G + EA  V   +
Sbjct: 389 NQAAAHTVGNALVSMYAESGCMEEARRVFNQL 420



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           LIS   +   + + +Q+H+ T+K G  ++  V N LV+   S  G ++ AC+ F ++   
Sbjct: 456 LISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSM-YSRCGYLEDACRSFNELKDR 514

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           +V  W +MI G ++    +  + ++ DM+ + V+P++ T+  +L   +    V  GKE
Sbjct: 515 NVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKE 572


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/620 (35%), Positives = 363/620 (58%), Gaps = 5/620 (0%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGD---- 64
           P+ +     ++  +  C S+  L QIH+  +  G     +V ++L+ ++C    GD    
Sbjct: 4   PAAVVASRHVLELLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGG 63

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + +A ++F +IP P   ++NT+++ YS  D  +  + ++  +L+  + P+ +T PF+LK 
Sbjct: 64  LCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKA 123

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
            T   AVE     H  V+K GF   +FV NAL+  +   G +  +R  F      +VV+W
Sbjct: 124 CTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSW 183

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N M  GY +  +  E   LFGEM  +G+L    T+V +L AC+   +L+VG+  H ++  
Sbjct: 184 NTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLV 243

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                + IL NAL DMY  CG++  A   F  +  K+V++WT+++      G VD  R +
Sbjct: 244 SGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDW 303

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           F+QMPER+ V W AMI  Y++  R  E L L+  M++  I PDEFT+  +L+AC   G L
Sbjct: 304 FEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDL 363

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
             G+ +  Y+  N     + + N+L+DMY +CG V+ A  +F EM  K+  +W  +I  L
Sbjct: 364 ASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGAL 423

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A++G   +++  F  M+  +  PDE+T+VG+LSAC+H G+++ G  YF  M   + +EP 
Sbjct: 424 AMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPE 483

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGCMVDLLGR GHL +A+ +IK+M +KP+ +VWGALLGACR+H + E+ ++  KQ+L
Sbjct: 484 VEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLL 543

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           EL+     ++VL+CN++   N+W++ ++LR+++ ++G KK  G S IE+  ++HEF   D
Sbjct: 544 ELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIHEFGVED 603

Query: 605 KSHPQTKEIYLKLDEMTSDL 624
             H  T EIY  +D+++  L
Sbjct: 604 LRHESTNEIYAAVDQLSYHL 623


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/519 (44%), Positives = 322/519 (62%), Gaps = 30/519 (5%)

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLK-DLDVGKRAHRYVKECKIVPNLILENALTDMY 261
            F  M R  V P   T   +L +CA L    DVG +AH    +     +  + N L  MY
Sbjct: 122 FFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMY 181

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           + C   GF     G+                        AR  F++MP    V W+AMI 
Sbjct: 182 S-CFGAGF----LGD------------------------ARNVFERMPRESAVTWSAMIG 212

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           GY+R     +A+ LFR MQ S +RPDE T++ +L A A+LGALEL  WV  ++++  +  
Sbjct: 213 GYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGK 272

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
            + + NALID   KCGDV+ A  VF  M  +   +WT++I  LA+ G G +++ +F +M 
Sbjct: 273 SVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMK 332

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
              ++PD+V ++GVL+AC+H GMVDEGR YF  M  ++GIEP   HYGCMVD+ GRAG +
Sbjct: 333 AVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMV 392

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
            + LE ++ MPMKPN I+W  L+ ACR H   E+ E   + +L   P +EA YV+L N+Y
Sbjct: 393 EQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVY 452

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMT 621
           A   RW    E+R+ +  RGIKK PGCS++E++G VHEF+AGD+SHPQ KEIY  ++EM+
Sbjct: 453 ALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEMS 512

Query: 622 SDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCV 681
            +L+ +G++   SEV LD+ EEDKE A+  HSEKLA+AF L+ + PG  +R+VKNLR+C 
Sbjct: 513 RELRRIGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCS 572

Query: 682 DCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           DCH   K +S VY+RE++VRD++RFH FK GSCSCKD+W
Sbjct: 573 DCHAAIKCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 200/443 (45%), Gaps = 55/443 (12%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           SN + SP     Q    +  +E   +   L Q  +  +K GL +NP V  +L  F  S  
Sbjct: 20  SNPTASPSRAAEQHC--LRLLERSSTPASLLQSFAFLLKSGLHSNPLVVTRL--FAASAS 75

Query: 63  GDMKYACKVFRKIPRPSVCL----WNTMIKGYSR---IDSHKNGVLIYLDMLKSDVRPDN 115
                   +   +  PS+ L     NT+I+ +       + +     +  ML++ V P+ 
Sbjct: 76  AAPALLEPLVSSLLGPSLPLDAFLVNTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAPNK 135

Query: 116 YTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVFVQNALISTY-CL-CGEVDMARGI 172
           +TFPFLLK       + + G + H   LKFGF +  +V N LI  Y C   G +  AR +
Sbjct: 136 FTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNV 195

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           F+   ++  VTW+AM  GY R     +   LF  M+  GV P  VT++ VL+A A L  L
Sbjct: 196 FERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGAL 255

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
           ++ +   R+V+   I  ++ L NAL D  A CG++  A+ +F  ++ + V+SWT++    
Sbjct: 256 ELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSV---- 311

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
                                      ID      R +EA+ +F EM+   + PD+   +
Sbjct: 312 ---------------------------IDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFI 344

Query: 353 SILTACANLGALELGEWVKTYIDKNK----VKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            +LTAC++ G ++ G   + Y D  K    ++  I     ++DM+ + G VE+     R 
Sbjct: 345 GVLTACSHAGMVDEG---RGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRA 401

Query: 409 M-LRKDKFTWTAMIVGLAINGHG 430
           M ++ +   W  ++   A   HG
Sbjct: 402 MPMKPNPIIWRTLVA--ACRAHG 422



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 12/321 (3%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           Q H+  +K G   +  V N L+  + C   G +  A  VF ++PR S   W+ MI GY R
Sbjct: 157 QAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVR 216

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                + V+++  M  S VRPD  T   +L       A+E  + +   V + G   SV +
Sbjct: 217 AGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTL 276

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NALI T   CG+VD A  +F+   +  VV+W ++        +  E   +F EM+  GV
Sbjct: 277 CNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGV 336

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFAL 271
           LP  V  + VL+AC+    +D G+     +K E  I P +     + DM+   G +   L
Sbjct: 337 LPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGL 396

Query: 272 EIFGNIKNK-DVISWTAIVTGYINRGQVDMA----RQYFDQMP--ERDYVLWTAMIDGYL 324
           E    +  K + I W  +V      G++++     R   ++ P  E +YV+ + +   Y 
Sbjct: 397 EFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNV---YA 453

Query: 325 RVNRFREALTLFREMQTSNIR 345
              R++E   + REM    I+
Sbjct: 454 LTQRWKEKSEIRREMSKRGIK 474



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 17/244 (6%)

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANL-GALELGEWVKTYIDKNKVKNDIFVGNA 388
           R A   F  M  + + P++FT   +L +CA L G+ ++G        K     D +V N 
Sbjct: 117 RRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNT 176

Query: 389 LIDMYC--KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           LI MY     G +  A+ VF  M R+   TW+AMI G    G    ++ +F  M  + + 
Sbjct: 177 LIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVR 236

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PDEVT +GVL+A    G ++  R +      + GI  +      ++D L + G ++ A+ 
Sbjct: 237 PDEVTVIGVLAAAADLGALELTR-WVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVA 295

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMA-----EMAAKQILELDPDNEAVYVLLCNIY 561
           V + M  +   + W +++ A  +    + A     EM A  +L   PD+    V    + 
Sbjct: 296 VFEGMEER-TVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVL---PDD----VAFIGVL 347

Query: 562 AACN 565
            AC+
Sbjct: 348 TACS 351


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/707 (35%), Positives = 387/707 (54%), Gaps = 49/707 (6%)

Query: 57  FCCSEKGDMKYACKVFRKIP---RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP 113
           +C S  GD+  A  VF + P   R +V ++N MI G+S  +   + + ++  M     +P
Sbjct: 90  YCAS--GDIALARSVFEETPVSMRDTV-MYNAMITGFSHNNDGYSAINLFCKMKHEGFKP 146

Query: 114 DNYTFPFLLKGFTRDIAVEFGK---ELHCHVLKFGFDSSVFVQNALISTYCLCGE----V 166
           D++T+  +L G    + V+  K   + H   LK G      V NAL+S Y  C      +
Sbjct: 147 DDFTYASVLAGLA--LVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLL 204

Query: 167 DMARGIF-DVSYKDD-------------------------------VVTWNAMFSGYKRV 194
             AR +F D+  KD+                               +V +NAM SGY   
Sbjct: 205 HSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNC 264

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
             + E  ++   M   G+     T   V+ ACA  + L +GK+ H YV   +   +   +
Sbjct: 265 GLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDF-SFHFD 323

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N+L  +Y  CG+   A  IF  +  KD++SW A+++GY++ G +  A+  F +M E++ +
Sbjct: 324 NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNIL 383

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W  MI G        E L LF  M+     P ++     + +CA LGA   G+     +
Sbjct: 384 SWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQL 443

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K    + +  GNALI MY KCG VE+AQ+VFR M   D  +W A+I  L  +GHG +++
Sbjct: 444 VKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAV 503

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           D++ +ML+  I PD +T++ VL+AC+H G+VD+GR+YF  M   + I P   HY  ++DL
Sbjct: 504 DVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDL 563

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           L R+G  +EA  +I+++P KP + +W ALL  CRVH + E+  +AA ++  L P+++  Y
Sbjct: 564 LCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTY 623

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           +LL N+YAA  +W+    +R+++ DRG+KK   CS IEM   VH F+  D SHP+ + +Y
Sbjct: 624 MLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVY 683

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
             L ++  +++ +GY+PD S V  DV  +  KE  +  HSEK+A+AFGL+   PG TIRI
Sbjct: 684 KYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRI 743

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            KNLR C DCH   + +S V  R++I+RD+ RFHHF++G CSC ++W
Sbjct: 744 FKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 213/474 (44%), Gaps = 73/474 (15%)

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKD------ 179
           R  +++  + +H +++ FGF     + N LI  YC   E+D AR +FD +S  D      
Sbjct: 26  RRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTT 85

Query: 180 --------------------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
                                     D V +NAM +G+           LF +M+ +G  
Sbjct: 86  MVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI--LENALTDMYAACGE----M 267
           P   T   VL+  A + D D  +    +    K     +  + NAL  +Y+ C      +
Sbjct: 146 PDDFTYASVLAGLALVVD-DEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLL 204

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER-DYVLWTAMIDGYLRV 326
             A ++F +I  KD  SWT ++TGY+  G  D+ ++    M E    V + AMI GY+  
Sbjct: 205 HSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNC 264

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK---------- 376
             ++EAL + R M +S I  DEFT  S++ ACAN   L+LG+ V  Y+ +          
Sbjct: 265 GLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDN 324

Query: 377 ------------NKVK--------NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
                       N+ +         D+   NAL+  Y   G + +A+ +F+EM  K+  +
Sbjct: 325 SLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W  MI GLA NG G++ L +FS M R    P +  + G + +C   G    G+++ A + 
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQL- 443

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           ++ G + + +    ++ +  + G + EA +V + MP   +S+ W AL+ A   H
Sbjct: 444 VKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCL-DSVSWNALIAALGQH 496



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 48/347 (13%)

Query: 223 LSACAKLK--DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
           L  C  L+   L + +  H  +      P+  + N L D+Y    E+ +A ++F  I   
Sbjct: 19  LRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEP 78

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFRE 338
           D I+ T +V+GY   G + +AR  F++ P   RD V++ AMI G+   N    A+ LF +
Sbjct: 79  DKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID--KNKVKNDIFVGNALIDMYCKC 396
           M+    +PD+FT  S+L   A L   +  + V+ +    K+       V NAL+ +Y +C
Sbjct: 139 MKHEGFKPDDFTYASVLAGLA-LVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRC 197

Query: 397 GD----VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD--------------------- 431
                 +  A++VF ++  KD+ +WT M+ G   NG  D                     
Sbjct: 198 ASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAM 257

Query: 432 -----------KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
                      ++L+M  +M+ + I  DE TY  V+ AC +  ++  G++  A +  +  
Sbjct: 258 ISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRR-- 315

Query: 481 IEPNEAHY-GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            E    H+   +V L  + G  NEA  + + MP K + + W ALL  
Sbjct: 316 -EDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAK-DLVSWNALLSG 360


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/468 (47%), Positives = 304/468 (64%), Gaps = 1/468 (0%)

Query: 253  LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
            +++ +  MYAA G++  +   F  I   DV+  TA+V      G VD AR  FD MP+RD
Sbjct: 1356 VQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRD 1415

Query: 313  YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            +V W+AMI GY+ V R REAL LF EM ++     E T+VS+LTACA +G L+ G+WV  
Sbjct: 1416 HVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHW 1475

Query: 373  YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            Y+    ++  I +G AL+DMY KCG V  A  VF  M  ++ +TWT+ + GLA+NG G +
Sbjct: 1476 YVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTE 1535

Query: 433  SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
             L +F +M  A I P+ V++V VL  C+  G+VDEGR  F  M  ++G++P   HYGCMV
Sbjct: 1536 CLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMD-KYGVDPWPEHYGCMV 1594

Query: 493  DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
            DL GRAG L++A+  I +MPM+P+  VWGALL A R+H   ++ + A  ++L ++ +N+A
Sbjct: 1595 DLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDA 1654

Query: 553  VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
             +V L NIYA    W     +R M+  +G+KK PG S IE++G VHEF  G + HP+  E
Sbjct: 1655 AHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNE 1714

Query: 613  IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
            I L L EM   L+  GY  +  EV  D+ EE+KE A+  HSEKLA+AFGLI     V IR
Sbjct: 1715 IELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIR 1774

Query: 673  IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            IVKNLR+C+DCHR  KLVS V++RE+++RD+ RFHHFK G CSC+DYW
Sbjct: 1775 IVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 196/470 (41%), Gaps = 98/470 (20%)

Query: 10   PSTLTQETPLISPI---------ETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
            P+T   ++ ++ P+            E+ H L+ +H+  +  G L +P+    L  F  S
Sbjct: 1197 PTTGVSQSNMMRPLLRDPTTLLPSLAEASH-LRALHAHLVVSGRLASPS---HLAAFLAS 1252

Query: 61   --EKGDMKYACKVFRKIPRPSVCL-WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
                  + YA  V  +  RP+  L  N  I+  +R          + D+    + PD+Y+
Sbjct: 1253 LASSNHLSYARLVLPQ--RPATLLAHNAFIRALARGPRPCLAFAAFRDL---PLPPDHYS 1307

Query: 118  FPFLLKGFT---------RDIAVEFGKEL-----HCHVLKFGFDSSVFVQNALISTYC-- 161
              FL++  T         + ++ E    L     H   +++G  +   VQ+ ++S Y   
Sbjct: 1308 LNFLVRAATALVASAAEEKHVSAEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAAL 1367

Query: 162  ------------------LC-----------GEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
                              +C           G+VD AR +FD   + D V W+AM +GY 
Sbjct: 1368 GDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYM 1427

Query: 193  RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
             V +  E   LF EM   G      T+V VL+ACA++  LD GK  H YV+   +  ++ 
Sbjct: 1428 HVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIK 1487

Query: 253  LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
            L  AL DMY+ CG +  A+E+F ++  ++V +WT+ V+G    G                
Sbjct: 1488 LGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGM--------------- 1532

Query: 313  YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
                              E L LF+ M+ + I+P+  + V++L  C+  G ++ G     
Sbjct: 1533 ----------------GTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFD 1576

Query: 373  YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
             +DK  V         ++D+Y + G ++ A     +M +   +  W A++
Sbjct: 1577 SMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALL 1626



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 106/247 (42%), Gaps = 1/247 (0%)

Query: 63   GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
            GD+  A  +F  +P+     W+ MI GY  +   +  ++++ +ML +       T   +L
Sbjct: 1399 GDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVL 1458

Query: 123  KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
                +   ++ GK +H +V   G   S+ +  AL+  Y  CG V  A  +F+   + +V 
Sbjct: 1459 TACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVY 1518

Query: 183  TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
            TW +  SG        E  +LF  ME  G+ P  V+ V VL  C+    +D G+     +
Sbjct: 1519 TWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM 1578

Query: 243  KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDMA 301
             +  + P       + D+Y   G +  A+    ++  +     W A++        VD+ 
Sbjct: 1579 DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLG 1638

Query: 302  RQYFDQM 308
            +   D++
Sbjct: 1639 KYALDKL 1645



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 39/173 (22%)

Query: 382  DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD------ 435
            D  V + ++ MY   GDV  ++  F E+   D    TAM+  LA  G  D + D      
Sbjct: 1353 DPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMP 1412

Query: 436  -------------------------MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR- 469
                                     +F +ML A     E T V VL+AC   G +D G+ 
Sbjct: 1413 QRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKW 1472

Query: 470  --EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
               Y     +Q  I+   A    +VD+  + G +  A+EV ++M  + N   W
Sbjct: 1473 VHWYVRSRGMQMSIKLGTA----LVDMYSKCGAVVTAMEVFESMAER-NVYTW 1520


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/481 (46%), Positives = 312/481 (64%), Gaps = 31/481 (6%)

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           A AKL D+  G++ H           + ++N L  MYAACG                   
Sbjct: 4   AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACG------------------- 44

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                         + A + F+ M ER+ V W ++I+GY    R  EALTLFREM    +
Sbjct: 45  ------------HAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGV 92

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
            PD FT+VS+L+ACA LGAL LG     Y+ K  +  ++  GNAL+D+Y KCG + +A +
Sbjct: 93  EPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHK 152

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           VF EM  K   +WT++IVGLA+NG G ++L++F ++ R  ++P E+T+VGVL AC+H GM
Sbjct: 153 VFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGM 212

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           VDEG +YF  M  ++GI P   HYGCMVDLLGRAG + +A E I+NMPM+PN++VW  LL
Sbjct: 213 VDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLL 272

Query: 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
           GAC +H    + E+A  Q+L+L+P +   YVLL N+YA+  RW +  ++R+ +L  G+KK
Sbjct: 273 GACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKK 332

Query: 585 TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED 644
           TPG S++E+   +HEFV GD+SHPQT+EIY+KL E+T  LK  GY+P IS V  D+ EE+
Sbjct: 333 TPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEE 392

Query: 645 KERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKT 704
           KE A+  HSEK+A+AF LI++  G+ IR+VKNLR+C DCH   KL+S V+DRE++VRD++
Sbjct: 393 KETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRS 452

Query: 705 R 705
           R
Sbjct: 453 R 453



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 163/312 (52%), Gaps = 35/312 (11%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           + +   + + V  G+++H   ++ GF+S VFVQN L+  Y  CG  + A  +F++  + +
Sbjct: 1   MQRAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERN 60

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           +VTWN++ +GY    + +E   LF EM  +GV P   T+V +LSACA+L  L +G+RAH 
Sbjct: 61  LVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHV 120

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           Y+ +  +  NL   NAL D+YA CG +  A ++F  ++ K V+SWT+++ G         
Sbjct: 121 YMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVG--------- 171

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFREMQTSNIRPDEFTIVSILTACA 359
                                  L VN F +EAL LF+E++   + P E T V +L AC+
Sbjct: 172 -----------------------LAVNGFGKEALELFKELERKGLMPSEITFVGVLYACS 208

Query: 360 NLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTW 417
           + G ++ G ++ K   ++  +   I     ++D+  + G V++A    + M ++ +   W
Sbjct: 209 HCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVW 268

Query: 418 TAMIVGLAINGH 429
             ++    I+GH
Sbjct: 269 RTLLGACTIHGH 280



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 16/318 (5%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +++HS  I+ G  +   VQN LV    +  G  + A K+F  +   ++  WN++I GY+ 
Sbjct: 15  EKVHSIAIRNGFESLVFVQNTLVHMYAA-CGHAESAHKLFELMAERNLVTWNSVINGYAL 73

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  + ++ +M    V PD +T   LL       A+  G+  H +++K G D ++  
Sbjct: 74  NGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHA 133

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL+  Y  CG +  A  +FD   +  VV+W ++  G        E  +LF E+ERKG+
Sbjct: 134 GNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGL 193

Query: 213 LPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           +P+ +T V VL AC+    +D G     R  +E  IVP +     + D+    G +  A 
Sbjct: 194 MPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAH 253

Query: 272 EIFGNIK-NKDVISWTAI-----VTGYINRGQVDMARQYFDQMPER--DYVLWTAMIDGY 323
           E   N+    + + W  +     + G++  G+V  A Q     P+   DYVL + +    
Sbjct: 254 EFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARA-QLLQLEPKHSGDYVLLSNLYASE 312

Query: 324 LR---VNRFREALTLFRE 338
            R   V++ R   T+ RE
Sbjct: 313 QRWSDVHKVRR--TMLRE 328


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/688 (35%), Positives = 371/688 (53%), Gaps = 31/688 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQ+H+  I  G      + N LV    S+ G++ +A K+F  +P+ ++  W  MI G S+
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMY-SKCGELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  +  +  M      P  + F   ++      ++E GK++HC  LKFG  S +FV
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            + L   Y  CG +  A  +F+     D V+W AM  GY ++ +F+E    F +M  + V
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV 203

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
                 +   L AC  LK    G+  H  V +     ++ + NALTDMY+  G+M  A  
Sbjct: 204 TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASN 263

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +FG                      +D           R+ V +T +IDGY+   +  + 
Sbjct: 264 VFG----------------------IDSEC--------RNVVSYTCLIDGYVETEQIEKG 293

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L++F E++   I P+EFT  S++ ACAN  ALE G  +   + K     D FV + L+DM
Sbjct: 294 LSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDM 353

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG +E A + F E+    +  W +++     +G G  ++  F +M+   + P+ +T+
Sbjct: 354 YGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITF 413

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           + +L+ C+H G+V+EG +YF  M   +G+ P E HY C++DLLGRAG L EA E I  MP
Sbjct: 414 ISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMP 473

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            +PN+  W + LGACR+H D EM ++AA+++++L+P N    VLL NIYA   +W++ R 
Sbjct: 474 FEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRS 533

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R  + D  +KK PG S +++    H F A D SH +   IY KLD +   +K  GY+P 
Sbjct: 534 VRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPX 593

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
              V LD+ +  KE+ +++HSE++A+AF LIS   G  I + KNLR+CVDCH   K +S 
Sbjct: 594 TDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISK 653

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           V  R++IVRD +RFHHF  GSCSC DYW
Sbjct: 654 VTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 199/419 (47%), Gaps = 36/419 (8%)

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           D      +++ + +   +  GK+LH  ++  G+    F+ N L++ Y  CGE+D A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233
           D   + ++V+W AM SG  +  +F E  + F  M   G +PT       + ACA L  ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
           +GK+ H    +  I   L + + L DMY+ CG M  A ++F  +  KD +SWTA++ GY 
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
                                          ++  F EAL  F++M    +  D+  + S
Sbjct: 184 -------------------------------KIGEFEEALLAFKKMIDEEVTIDQHVLCS 212

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR-EMLRK 412
            L AC  L A + G  V + + K   ++DIFVGNAL DMY K GD+E A  VF  +   +
Sbjct: 213 TLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECR 272

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           +  ++T +I G       +K L +F ++ R  I P+E T+  ++ AC +   +++G +  
Sbjct: 273 NVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH 332

Query: 473 AD-MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           A  M I    +P  +    +VD+ G+ G L  A++    +   P  I W +L+     H
Sbjct: 333 AQVMKINFDEDPFVSSI--LVDMYGKCGLLEHAIQAFDEIG-DPTEIAWNSLVSVFGQH 388


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/731 (33%), Positives = 398/731 (54%), Gaps = 71/731 (9%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           + G++  A  +F  + + SV  W  +I GY++ +       ++ DM +  + PD+ T   
Sbjct: 85  KSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLAT 144

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           LL GFT   +V    ++H HV+K G+DS++ V N+L+ +YC    + +A  +F    + D
Sbjct: 145 LLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKD 204

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
            VT+NA+ +GY +     +   LF +M+  G  P+  T   VL+A  ++ D++ G++ H 
Sbjct: 205 NVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHS 264

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV-- 298
           +V +C  V N+ + NAL D Y+    +  A ++F  +   D IS+  ++T     G+V  
Sbjct: 265 FVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEE 324

Query: 299 ---------------------------------DMARQYFDQMPERDYV----LWTAMID 321
                                            +M RQ   Q    D +    +  +++D
Sbjct: 325 SLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVD 384

Query: 322 GYLRVNRFREA-------------------------------LTLFREMQTSNIRPDEFT 350
            Y + ++F EA                               L LF EM  + I  D  T
Sbjct: 385 MYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSAT 444

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
             SIL ACANL +L LG+ + + I ++   +++F G+AL+DMY KCG +++A ++F+EM 
Sbjct: 445 YASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMP 504

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            ++  +W A+I   A NG G  +L  F QM+ + + P+ V+++ +L AC+H G+V+EG +
Sbjct: 505 VRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQ 564

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           YF  MT  + +EP   HY  MVD+L R+G  +EA +++  MP +P+ I+W ++L +CR+H
Sbjct: 565 YFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIH 624

Query: 531 RDAEMAEMAAKQILELDPDNEAV-YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS 589
           ++ E+A  AA Q+  +    +A  YV + NIYAA   WD+  ++++ + +RGI+K P  S
Sbjct: 625 KNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYS 684

Query: 590 MIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAV 649
            +E+    H F A D SHPQTKEI  KLDE+   ++  GY PD +    +V EE K  ++
Sbjct: 685 WVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESL 744

Query: 650 YQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHF 709
             HSE++A+AF LIS+  G  I ++KNLR C DCH   K++S + +RE+ VRD +RFHHF
Sbjct: 745 KYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHF 804

Query: 710 KHGSCSCKDYW 720
             GSCSCKDYW
Sbjct: 805 TDGSCSCKDYW 815



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 213/482 (44%), Gaps = 74/482 (15%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           +V   N +I  Y   G +  AR +FD   +  VVTW  +  GY +  +F E   LF +M 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
           R G++P  +T+  +LS   + + ++   + H +V +      L++ N+L D Y     +G
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG 191

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY--------------- 313
            A  +F ++  KD +++ A++TGY   G    A   F +M +  +               
Sbjct: 192 LACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGI 251

Query: 314 -------------------VLW-----TAMIDGYLRVNRFREA----------------- 332
                               +W      A++D Y + +R  EA                 
Sbjct: 252 QMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNV 311

Query: 333 --------------LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
                         L LFRE+Q +     +F   ++L+  AN   LE+G  + +      
Sbjct: 312 LITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTD 371

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
             +++ VGN+L+DMY KC    +A R+F ++  +    WTA+I G    G  +  L +F 
Sbjct: 372 AISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFV 431

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M RA I  D  TY  +L AC +   +  G++  + + I+ G   N      +VD+  + 
Sbjct: 432 EMHRAKIGADSATYASILRACANLASLTLGKQLHSRI-IRSGCLSNVFSGSALVDMYAKC 490

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVL 556
           G + EAL++ + MP++ NS+ W AL+ A   + D   A  + +Q++   L P++ +   +
Sbjct: 491 GSIKEALQMFQEMPVR-NSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSI 549

Query: 557 LC 558
           LC
Sbjct: 550 LC 551



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 134/279 (48%), Gaps = 2/279 (0%)

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
           PN    N     +   G++G A ++F  + +K+VIS   ++ GY+  G +  AR  FD M
Sbjct: 40  PNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSM 99

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
            +R  V WT +I GY + NRF EA  LF +M    + PD  T+ ++L+      ++    
Sbjct: 100 VQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVA 159

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            V  ++ K    + + V N+L+D YCK   +  A  +F+ M  KD  T+ A++ G +  G
Sbjct: 160 QVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEG 219

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
               ++++F +M      P E T+  VL+A      ++ G++  +   ++     N    
Sbjct: 220 FNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHS-FVVKCNFVWNVFVA 278

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
             ++D   +   + EA ++   MP + + I +  L+  C
Sbjct: 279 NALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCC 316


>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 633

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/626 (41%), Positives = 377/626 (60%), Gaps = 16/626 (2%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P  L+ E  + S + +C++M Q  QI++  I  G   N  +   L TF  S         
Sbjct: 9   PRFLSNER-IKSLLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHH 67

Query: 70  --KVFRKIPRPSVCLWNTMIKGYSRIDSH-KNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
              +F +I  P + LWN +IK YS+I S  ++   ++  ML S V PD++TFPFLLK   
Sbjct: 68  SHTLFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACA 127

Query: 127 RDI--AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
             +  A +FG ++HCHVL+ GF S VFV NAL++ YC  G+V  A  +FD S+  D V++
Sbjct: 128 NVLISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSF 187

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-K 243
           N M +G+ R        ++FGEM    V P   T V +LS C+ L+D  +G++ H  V +
Sbjct: 188 NTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYR 247

Query: 244 ECKIVP-NLILENALTDMYAACGEMGFALEIFGNIK-NKDVIS-WTAIVTGYINRGQVDM 300
           E      N++L N L DMYA CG +  A  +   +K  K V++ WT++V+ Y  RG+V +
Sbjct: 248 ELGCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKV 307

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           AR+ FDQM ERD V WTAMI GY     F+EAL LF +++   ++PDE  +V+ L+ACA 
Sbjct: 308 ARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACAR 367

Query: 361 LGALELGEWV-KTYIDKNKV--KNDIFVGNALIDMYCKCGDVEKAQRVFREML--RKDKF 415
           LGALELG  + + Y  +N     N  F  +A++DMY KCG ++ A  VFR+    +K  F
Sbjct: 368 LGALELGRRIHRQYAGENWTCSINRGFT-SAVVDMYAKCGSIDIALDVFRKTSDDKKTTF 426

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
            + ++I GLA +G G+ + ++F +M    + PD +T+V VLSAC H G+VD G++ F  M
Sbjct: 427 LYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESM 486

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535
              +G+ P   HYGCMVDLLGRAGHL+EA  +I  MP K N+++W ALL AC+VH D  +
Sbjct: 487 FTVYGVSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVAL 546

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
           A +A+ +++EL  D+ A YV+L N+ +  ++ D    LR+ I + GI+K PG S +EMN 
Sbjct: 547 ARVASYELVELQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEMNR 606

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMT 621
            +H+F+AGDKSHP+ K   L L ++ 
Sbjct: 607 SLHKFLAGDKSHPEAKTTELMLRDIN 632


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/630 (39%), Positives = 362/630 (57%), Gaps = 14/630 (2%)

Query: 93  IDSHKNGVLIYLDMLKSDVRP--DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           I SH N  L+ L     D+ P  D  ++  +L  + R+  VE  + L     ++     V
Sbjct: 13  ISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DV 68

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
              NAL+S Y   G++  AR +FD     DVV+WN M SGY R     E R+LF     +
Sbjct: 69  ISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR 128

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
            V     T   V+S  A+   L+  +R    + E     N +  NA+   Y     M  A
Sbjct: 129 DVF----TWTAVVSGYAQNGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMDEA 180

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            E+F  +  ++V SW  ++TGY   G ++ A+  FD MP++D V W AM+  Y +     
Sbjct: 181 KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSE 240

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           E L LF EM       +      +L+ CA++ ALE G  +   + +       FVGNAL+
Sbjct: 241 ETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALL 300

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            MY KCG++E A+  F EM  +D  +W  MI G A +G G ++L++F  M   S  PD++
Sbjct: 301 AMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDI 360

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T VGVL+AC+H+G+V++G  YF  M    G+     HY CM+DLLGRAG L EA +++K+
Sbjct: 361 TLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKD 420

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MP +P+S +WGALLGA R+HR+ E+   AA++I EL+P+N  +YVLL NIYA+  +W + 
Sbjct: 421 MPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDA 480

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
           R++R M+ +RG+KK PG S IE+   VH F AGD  HP+ ++IY  L+++   +K  GY+
Sbjct: 481 RKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYV 540

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
                V  DV EE+KE  +  HSEKLA+A+G+++  PG  IR++KNLR+C DCH   K +
Sbjct: 541 SATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYI 600

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S +  R +++RD  RFHHF+ GSCSC DYW
Sbjct: 601 SAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 162/407 (39%), Gaps = 80/407 (19%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N +IS++   G V +AR  FD++ + D V+WN M + Y R  + +E R LF         
Sbjct: 10  NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF--------- 60

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
                                           +   ++I  NAL   Y   G+M  A E+
Sbjct: 61  ------------------------------NSRTEWDVISWNALMSGYVQWGKMSEAREL 90

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  +DV+SW  +V+GY  RG +  AR+ FD  P RD   WTA++ GY +     EA 
Sbjct: 91  FDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEAR 150

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            +F  M   N        VS     A      + +  K   +    +N +   N ++  Y
Sbjct: 151 RVFDAMPERN-------AVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-VASWNTMLTGY 202

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            + G +E+A+ VF  M +KD  +W AM+   +  G  +++L +F +M R     +   + 
Sbjct: 203 AQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFA 262

Query: 454 GVLSACT-----HTGMVDEGR------------------EYF-------ADMTIQHGIEP 483
            VLS C        GM   GR                   YF       A    +   E 
Sbjct: 263 CVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER 322

Query: 484 NEAHYGCMVDLLGRAGHLNEALEV---IKNMPMKPNSIVWGALLGAC 527
           +   +  M+    R G   EALE+   ++    KP+ I    +L AC
Sbjct: 323 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 369



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 154/364 (42%), Gaps = 41/364 (11%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           + +GDM  A ++F   P   V  W  ++ GY++    +    ++  M + +    N    
Sbjct: 110 ARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVA 169

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
             ++    D A E    + C         +V   N +++ Y   G ++ A+ +FD   + 
Sbjct: 170 AYIQRRMMDEAKELFNMMPCR--------NVASWNTMLTGYAQAGMLEEAKAVFDTMPQK 221

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           D V+W AM + Y +    +ET +LF EM R G          VLS CA +  L+ G + H
Sbjct: 222 DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLH 281

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
             +          + NAL  MY  CG M  A   F  ++ +DV+SW  ++ GY       
Sbjct: 282 GRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGY------- 334

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
            AR  F                        +EAL +F  M+T++ +PD+ T+V +L AC+
Sbjct: 335 -ARHGFG-----------------------KEALEIFDMMRTTSTKPDDITLVGVLAACS 370

Query: 360 NLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTW 417
           + G +E G  +  +      V         +ID+  + G + +A  + ++M    D   W
Sbjct: 371 HSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMW 430

Query: 418 TAMI 421
            A++
Sbjct: 431 GALL 434



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 120/279 (43%), Gaps = 49/279 (17%)

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
           V + +  N +   +A  G +  A   F     KD +SW  ++  Y+  G+V+ AR  F+ 
Sbjct: 3   VRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS 62

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
             E D + W A++ GY++  +  EA  LF  M                            
Sbjct: 63  RTEWDVISWNALMSGYVQWGKMSEARELFDRMPG-------------------------- 96

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
                         D+   N ++  Y + GD+ +A+R+F     +D FTWTA++ G A N
Sbjct: 97  -------------RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQN 143

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G  +++  +F  M       + V++  +++A     M+DE +E F  M  +     N A 
Sbjct: 144 GMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVAS 194

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           +  M+    +AG L EA  V   MP K +++ W A+L A
Sbjct: 195 WNTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAA 232



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 11/184 (5%)

Query: 23  IETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVT--FCCSEKGDMKYACKVFRKIPR 77
           + TC  +  L+   Q+H + I+ G      V N L+   F C   G+M+ A   F ++  
Sbjct: 265 LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC---GNMEDARNAFEEMEE 321

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG-KE 136
             V  WNTMI GY+R    K  + I+  M  +  +PD+ T   +L   +    VE G   
Sbjct: 322 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 381

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVK 195
            +     FG  +       +I      G +  A  +  D+ ++ D   W A+  G  R+ 
Sbjct: 382 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL-GASRIH 440

Query: 196 QFDE 199
           +  E
Sbjct: 441 RNPE 444


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/558 (41%), Positives = 339/558 (60%), Gaps = 38/558 (6%)

Query: 169 ARGIFD-VSYKDDVVTWNAMFSGYKRVKQF----DETRKLFGEMERKGVLPTSVTIVLVL 223
           AR +FD + +  DVV +N +  GY R        +E  ++F  M  +GV P + T V +L
Sbjct: 86  ARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            ACA  +  + G++AH    +     +  +   L +MYA CG+                 
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGD----------------- 188

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
                         V  AR  FD+M     V + AMI   +R +   EAL LFREMQ   
Sbjct: 189 --------------VRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKG 234

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           ++P   T++S+L+ACA LGALELG W+  YI K ++ + + V  ALIDMY KCG +E A 
Sbjct: 235 LKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAI 294

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
            VF++M  +DK  W+ M+V  A +G+G +++ MF +M +  + PD+VT++GVL AC+H+G
Sbjct: 295 GVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSG 354

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
           MV EG +YF  M  ++GI     HYGC+ DLL R+G L  A + I  +P+KP +I+W  L
Sbjct: 355 MVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTL 413

Query: 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           L AC  H D +M +   ++ILELD  +   YV+  N+ A   RW+    +R+++ ++G+ 
Sbjct: 414 LSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVV 473

Query: 584 KTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF-LDVGE 642
           K PGCS IE++ +VHEF AGD SHP ++E    +DE+   LK VGY+P+ S VF +++GE
Sbjct: 474 KVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGE 533

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E+K  ++  HSEKLA++FGL+++ PG T+RIVKNLR+C DCH MAKLVSMV++R +I+RD
Sbjct: 534 EEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRD 593

Query: 703 KTRFHHFKHGSCSCKDYW 720
             RFHHF+ G CSC DYW
Sbjct: 594 LNRFHHFEDGVCSCGDYW 611



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 230/464 (49%), Gaps = 50/464 (10%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLG--LLTNPTVQNKLVTFCCSEKGD----MKYACKVF 72
           L++ +  C S+  L Q+H+  +K G  L  +P    +L+T C  +  +    + YA +VF
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVF 90

Query: 73  RKIPRPSVCLW-NTMIKGYSRIDSH----KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
            +IP P   +W NT+++GY+R        +    +++ M++  V PD YTF  LLK    
Sbjct: 91  DRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACAS 150

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             A E G++ H   +K G     +V   LI+ Y  CG+V  AR +FD    + VV++NAM
Sbjct: 151 ARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAM 210

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            +   R     E   LF EM+ KG+ PTSVT++ VLSACA L  L++G+  H Y+++ ++
Sbjct: 211 ITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRL 270

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
              + +  AL DMYA CG +  A+ +F +++++D  +W+ ++  Y N G           
Sbjct: 271 DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGY---------- 320

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                 REA+++F EM+   ++PD+ T + +L AC++ G +  G
Sbjct: 321 ---------------------GREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEG 359

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAI 426
                 + +  + + I     + D+  + G +E+A +   E+ ++     W  ++   A 
Sbjct: 360 LQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACA- 418

Query: 427 NGHGDKSLDMFSQMLRASIIPDEV---TYVGVLSACTHTGMVDE 467
            GHGD  +DM  ++    +  D+     YV   + C +TG  +E
Sbjct: 419 -GHGD--VDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEE 459


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/519 (45%), Positives = 322/519 (62%), Gaps = 30/519 (5%)

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLD-VGKRAHRYVKECKIVPNLILENALTDMY 261
            F  M R  VLP   T   +L ACA L     VG +AH    +     +  + N L  MY
Sbjct: 118 FFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTLIHMY 177

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           +      F  E  G+                        AR  FD+M +   V W+AMI 
Sbjct: 178 SC-----FGGEFLGD------------------------ARNVFDRMDKSSVVTWSAMIG 208

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           GY+R     +A+ LFREMQ S +RPDE T++ +L A A+LGALEL  WV  ++++  +  
Sbjct: 209 GYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGK 268

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
            + + NALID   KCGDV+ A  VF+ M  +   +WT++I  LA+ G G +++ +F  M 
Sbjct: 269 SVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMK 328

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
            A + PD+V ++GVL+AC+H GMVDEG  YF  M +++GI+P   HYGCMVD+ GRAG +
Sbjct: 329 TAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMV 388

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
             A+E I  MPMKPN I+W  L+ ACR H   E+ E   + +L   P +EA YV+L N+Y
Sbjct: 389 ERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVY 448

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMT 621
           A   RW    E+R+ +  RGIKK PGCS++E++G VHEF+AGD+SHPQ KEIY+ ++EM 
Sbjct: 449 ALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMA 508

Query: 622 SDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCV 681
            +LK VG++   SEV LD+ EEDKE A+  HSEKLA+AF L+ + PG  +R+VKNLR+C 
Sbjct: 509 RELKHVGHISATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCS 568

Query: 682 DCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           DCH   K +S+VY+RE+IVRD++RFH FK+GSCSC D+W
Sbjct: 569 DCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 202/442 (45%), Gaps = 54/442 (12%)

Query: 9   PPSTL-TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           PPS     E   +  +E   +   + Q  +  +K GL  NP V  +L  F  S       
Sbjct: 19  PPSAARAAEQHCLHLLERSSAPAAVLQSLAFLLKSGLHANPLVLTRL--FASSAAAAPAL 76

Query: 68  ACKVFRKIPRPSVC----LWNTMIKGY--SRIDSHK-NGVLIYLDMLKSDVRPDNYTFPF 120
              +   + RPSV     L NT+I+ +  S + S +      +  ML+S V P+ +TFPF
Sbjct: 77  LEPLVAALLRPSVPIDAFLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPF 136

Query: 121 LLKGFTRDIAVE-FGKELHCHVLKFGFDSSVFVQNALISTY-CLCGE-VDMARGIFDVSY 177
           LLK           G + H   LKFGF +  +V N LI  Y C  GE +  AR +FD   
Sbjct: 137 LLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMD 196

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           K  VVTW+AM  GY R     +   LF EM+  GV P  VT++ VL+A A L  L++ + 
Sbjct: 197 KSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARW 256

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
             R+V+   I  ++ L NAL D  A CG++  A+ +F  ++ + V+SWT++         
Sbjct: 257 VGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSV--------- 307

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
                                 ID      R +EA+ +F  M+T+ +RPD+   + +LTA
Sbjct: 308 ----------------------IDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTA 345

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRK 412
           C++ G ++ G     Y D  K++  I         ++DM+ + G VE+A      M ++ 
Sbjct: 346 CSHAGMVDEG---YGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKP 402

Query: 413 DKFTWTAMIVGLAINGHGDKSL 434
           +   W  ++   A   HG   L
Sbjct: 403 NPIIWRTLVA--ACRAHGRLEL 422



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 143/321 (44%), Gaps = 12/321 (3%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           Q H+  +K G  T+  V N L+  + C     +  A  VF ++ + SV  W+ MI GY R
Sbjct: 153 QAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVR 212

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                + V ++ +M  S VRPD  T   +L       A+E  + +   V + G   SV +
Sbjct: 213 GGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTL 272

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NALI     CG+VD A  +F    +  VV+W ++        +  E   +F  M+  GV
Sbjct: 273 CNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGV 332

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFAL 271
            P  V  + VL+AC+    +D G      +K E  I P +     + DM+   G +  A+
Sbjct: 333 RPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAM 392

Query: 272 EIFGNIKNK-DVISWTAIVTGYINRGQVDMA----RQYFDQMP--ERDYVLWTAMIDGYL 324
           E    +  K + I W  +V      G++++     R   ++ P  E +YV+ + +   Y 
Sbjct: 393 EFIHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNV---YA 449

Query: 325 RVNRFREALTLFREMQTSNIR 345
              R++E   + REM    I+
Sbjct: 450 LTQRWKEKSEIRREMSKRGIK 470



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 12/243 (4%)

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANL-GALELGEWVKTYIDKNKVKNDIFVG 386
           R R A   F  M  S + P++FT   +L ACA L G   +G        K     D +V 
Sbjct: 112 RLRAA-AFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVS 170

Query: 387 NALIDMY-CKCGD-VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           N LI MY C  G+ +  A+ VF  M +    TW+AMI G    G    ++ +F +M  + 
Sbjct: 171 NTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASG 230

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           + PDEVT +GVL+A    G ++  R +      + GI  +      ++D L + G ++ A
Sbjct: 231 VRPDEVTVIGVLAAAADLGALELAR-WVGRFVEREGIGKSVTLCNALIDALAKCGDVDGA 289

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVH-RDAE-MAEMAAKQILELDPDNEAVYVLLCNIYA 562
           + V + M  +   + W +++ A  +  R  E +A   A +   + PD+    V+   +  
Sbjct: 290 VAVFQGMEER-TVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDD----VVFIGVLT 344

Query: 563 ACN 565
           AC+
Sbjct: 345 ACS 347


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/595 (40%), Positives = 362/595 (60%), Gaps = 22/595 (3%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYC----LCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           +++H  ++K    +  F  + LI+ +C    + G +D A  +F      +   + A+  G
Sbjct: 23  RQIHAQMIKTNLLNHQFTVSRLIA-FCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKG 81

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSV--TIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           +       E+  L+  M       + V  +I  VL AC KL   D G++ H  V +  + 
Sbjct: 82  FSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLW 141

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            +  + N++  MY   GE+  A  +F  + N+DV+SW +++ GY+  G++++A + FD+M
Sbjct: 142 FDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEM 201

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
           PERD V   AMIDGY             +EM +  +RPD   IVS+L+A A+LG +E G+
Sbjct: 202 PERDLVSCNAMIDGY------------GKEMLSLGLRPDGPAIVSVLSAIADLGFVEEGK 249

Query: 369 WVKTYIDKNKVK-NDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIVGLAI 426
           W+  Y+  NK++ +  F+G+ALIDMY KCG +E A  VFR +  R++   W +MI GLAI
Sbjct: 250 WLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAI 309

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G   ++LD+F +M R  I P+E+T++G+LS C+H G+V+EG+ YF  M  ++ I P   
Sbjct: 310 HGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQ 369

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HYGCM+DL GRAG L +AL VI+NMP + + + W A+L A   H   E+ + AA + +EL
Sbjct: 370 HYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIEL 429

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK- 605
            PD+ + YVLL NIYA   RWD+  ++R M+  RG+KK  GCS + +NG VHEF+ G + 
Sbjct: 430 APDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKEL 489

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
               + ++  K+ E+ S LK  GY PD+++V LD+ +E KE  +  HSEK+A+AFGLI  
Sbjct: 490 DSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHI 549

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
                I IVKNLR+C DCH   KLVS VY+R++I+RD+ RFHHF++G CSC +YW
Sbjct: 550 NKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 604



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/473 (28%), Positives = 227/473 (47%), Gaps = 60/473 (12%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE--KGDMKYAC 69
           T     P++S ++ C+S+ +L+QIH+Q IK  LL +    ++L+ FC      G + YA 
Sbjct: 2   TAISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYAS 61

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK--SDVRPDNYTFPFLLKGFTR 127
            VF +I  P+  ++  +IKG+S   +    +++Y  ML   +      ++ P +LK   +
Sbjct: 62  SVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGK 121

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
            +A + G+++H  VLK       FV N+++  Y   GE+++AR +FD     DVV+WN+M
Sbjct: 122 LLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSM 181

Query: 188 FSGYKRVKQFDETRKLFGEMERK-------------------GVLPTSVTIVLVLSACAK 228
            +GY +  + +   +LF EM  +                   G+ P    IV VLSA A 
Sbjct: 182 IAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIAD 241

Query: 229 LKDLDVGKRAHRYVKECKI-VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
           L  ++ GK  H YV   KI + +  + +AL DMY+ CG +  A  +F +I ++       
Sbjct: 242 LGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHR------- 294

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
                                  R+   W +MI G       REAL +F EM+  +I P+
Sbjct: 295 -----------------------RNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPN 331

Query: 348 EFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           E T + +L+ C++ G +E G+ + ++  +K K+   I     +ID++ + G +E A  V 
Sbjct: 332 EITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVI 391

Query: 407 REM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA-SIIPDEVTYVGVLS 457
           + M    D   W A++     +GH +      S  LRA  + PD+ +   +LS
Sbjct: 392 QNMPFEADLLAWKAILSASMKHGHIEIGK---SAALRAIELAPDDSSSYVLLS 441


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/596 (39%), Positives = 358/596 (60%), Gaps = 9/596 (1%)

Query: 47  NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM 106
           N    N L++   ++ G +  A ++F  +P P  C WN+M+ G+++ D  +  +  ++ M
Sbjct: 80  NTFTWNSLISVL-TKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKM 138

Query: 107 LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166
            + D   + Y+F   L      + +  G ++H  V K  + + V++ +ALI  Y  CG V
Sbjct: 139 HREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSV 198

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
             A  +F    + ++VTWN++ + Y++     E  ++F  M   G+ P  VT+  V+SAC
Sbjct: 199 ACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSAC 258

Query: 227 AKLKDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           A L  L  G + H R VK  K   +L+L NAL DMYA C ++  A  +F  +  ++V+S 
Sbjct: 259 ASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSE 318

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           T++V+GY     V  AR  F +M +R+ V W A+I GY +     EAL LFR ++  +I 
Sbjct: 319 TSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIW 378

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDK------NKVKNDIFVGNALIDMYCKCGDV 399
           P  +T  ++L+ACANL  L LG    T++ K      +  ++DIFVGN+LIDMY KCG +
Sbjct: 379 PTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSI 438

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           E   RVF +M  +D  +W A+IVG A NG+G ++L +F +ML     PD VT +GVL AC
Sbjct: 439 EDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCAC 498

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H G+V+EGR YF  M  +HG+ P + HY CMVDLLGRAG LNEA  +I+ MP+ P+++V
Sbjct: 499 SHAGLVEEGRHYFFSME-EHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVV 557

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           WG+LL AC+VH + EM + AA+++LE+DP N   YVLL N+YA   RW +   +R+++  
Sbjct: 558 WGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQ 617

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
           +G+ K PGCS IE+   VH F+  DKSHP  K+IY  L  +T  +K VGY+PD ++
Sbjct: 618 QGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDAND 673



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/522 (25%), Positives = 232/522 (44%), Gaps = 114/522 (21%)

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           P++  F  LL    R  +    + +H  +L   F   +F+QN LI  Y  C  +D AR +
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 173 FD-------------VSY------------------KDDVVTWNAMFSGYKRVKQFDETR 201
           FD             +S                   + D  +WN+M SG+ +  +F+E+ 
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
           + F +M R+  L    +    LSACA L DL++G + H  V + +   ++ + +AL DMY
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           + CG +  A E+F  +  +++++W +++T Y   G                         
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPAS---------------------- 230

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVK 380
                    EAL +F  M  S + PDE T+ S+++ACA+L AL+ G  +   + K NK +
Sbjct: 231 ---------EALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFR 281

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRV-------------------------------FREM 409
           +D+ +GNAL+DMY KC  V +A+RV                               F +M
Sbjct: 282 DDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKM 341

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC---------- 459
            +++  +W A+I G   NG  +++L +F  + R SI P   T+  +LSAC          
Sbjct: 342 TQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGR 401

Query: 460 -THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
             HT ++ +G E+      Q G E +      ++D+  + G + +   V + M  + + +
Sbjct: 402 QAHTHVLKQGFEF------QSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKER-DCV 454

Query: 519 VWGALL-GACRVHRDAEMAEMAAKQIL-ELDPDNEAVYVLLC 558
            W A++ G  +    AE  ++  K ++    PD+  +  +LC
Sbjct: 455 SWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLC 496



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 155/302 (51%)

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
           LP S     +L +C + +     +  H  +   +    + ++N L D+Y  C  +  A +
Sbjct: 12  LPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARK 71

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  +  ++  +W ++++     G +D A + F  MPE D   W +M+ G+ + +RF E+
Sbjct: 72  LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L  F +M   +   +E++  S L+ACA L  L +G  V   + K++   D+++G+ALIDM
Sbjct: 132 LEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM 191

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG V  A+ VF  M+ ++  TW ++I     NG   ++L++F +M+ + + PDEVT 
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTL 251

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
             V+SAC     + EG +  A +   +    +      +VD+  +   +NEA  V   M 
Sbjct: 252 ASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 513 MK 514
           ++
Sbjct: 312 IR 313



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 159/376 (42%), Gaps = 50/376 (13%)

Query: 16  ETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           E  L S +  C S+  LK   QIH++ +K     +  V    +    ++   +  A +VF
Sbjct: 248 EVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVF 307

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV--------------------- 111
            ++   +V    +M+ GY+R  S K    ++  M + +V                     
Sbjct: 308 DRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALR 367

Query: 112 ----------RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF------DSSVFVQNA 155
                      P +YTF  LL        +  G++ H HVLK GF      +S +FV N+
Sbjct: 368 LFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNS 427

Query: 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
           LI  Y  CG ++    +F+   + D V+WNA+  GY +     E  ++F +M   G  P 
Sbjct: 428 LIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPD 487

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
            VT++ VL AC+    ++ G+     ++E  ++P       + D+    G +  A  +  
Sbjct: 488 HVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIE 547

Query: 276 NIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTAMIDGYLRVNR 328
            +  N D + W +++      G ++M +   +++ E D      YVL + M   Y  + R
Sbjct: 548 AMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNM---YAELGR 604

Query: 329 FREALTLFREMQTSNI 344
           + + + + + M+   +
Sbjct: 605 WGDVVRVRKLMRQQGV 620


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/706 (35%), Positives = 401/706 (56%), Gaps = 37/706 (5%)

Query: 19  LISPIETCE--SMHQLK-QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L++ ++ CE  S  +L  +IH+  +K   + +  V N LV       G M YA ++F ++
Sbjct: 115 LVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHV-RFGKMSYAARIFDEL 173

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  WN+MI G+++   +   +  +  +  ++++PD  +   +L    R   +  GK
Sbjct: 174 DEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGK 233

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           E+H + +K   DS++ + N LI  Y  C  V  A  +FD     D+++W  + + Y +  
Sbjct: 234 EIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNN 293

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
              E  KL  +++ KG+   ++ I   L AC+ L+ L   K  H Y  + + + +L+++N
Sbjct: 294 CHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLK-RGLSDLMMQN 352

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
            + D+YA CG + +A  +                               F+ +  +D V 
Sbjct: 353 MIIDVYADCGNINYATRM-------------------------------FESIKCKDVVS 381

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           WT+MI  Y+      EAL +F  M+ +++ PD  T+VSIL+A A+L AL  G+ +  +I 
Sbjct: 382 WTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIF 441

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
           +     +    N+L+DMY  CG +E A +VF     K    WT MI    ++G G  +++
Sbjct: 442 RKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVE 501

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +FS M    +IPD +T++ +L AC+H+G+++EG+     M  ++ +EP   HY C+VDLL
Sbjct: 502 LFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLL 561

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
           GRA HL EA   +K+M ++P + VW A LGACR+H + ++ E+AA+++L+LDPD+   YV
Sbjct: 562 GRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYV 621

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
           L+ N++AA  RW +  E+R  +   G+KK PGCS IE+   VH F+  DKSHP++ +IY 
Sbjct: 622 LISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQ 681

Query: 616 KLDEMTSDL-KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
           KL ++T  L K  GY+P    V  +VG+E+K + +Y HSE+LA+A+GL+S+  G  IRI 
Sbjct: 682 KLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRIT 741

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+CVDCH   KLVS  ++RE+IVRD +RFHHF+ G CSC D+W
Sbjct: 742 KNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 142/512 (27%), Positives = 240/512 (46%), Gaps = 38/512 (7%)

Query: 27  ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI-PRPSVCLWNT 85
           E +H+  +IH   IK G  +   V N LV+   ++  D+  A K+F ++  R  V  WN+
Sbjct: 24  EDIHRGAEIHGLIIKCGYDSIVFVANSLVSMY-AKCNDILGARKLFDRMNERNDVVSWNS 82

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           +I  YS        + ++ +M K+ V  + YT    L+        + G E+H  +LK  
Sbjct: 83  IISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSN 142

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
               V+V NAL++ +   G++  A  IFD   + D +TWN+M +G+ +   ++E  + F 
Sbjct: 143 QVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFC 202

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
            ++   + P  V+++ +L+A  +L  L  GK  H Y  +  +  NL + N L DMY+ C 
Sbjct: 203 GLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCC 262

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            + +A  +F  + NKD+ISWT ++  Y                                 
Sbjct: 263 CVAYAGLVFDKMINKDLISWTTVIAAYAQN------------------------------ 292

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
            N   EAL L R++QT  +  D   I S L AC+ L  L   + V  Y  K  + +D+ +
Sbjct: 293 -NCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL-SDLMM 350

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            N +ID+Y  CG++  A R+F  +  KD  +WT+MI     NG  +++L +F  M   S+
Sbjct: 351 QNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSV 410

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
            PD +T V +LSA      +++G+E       + G     +    +VD+    G L  A 
Sbjct: 411 EPDSITLVSILSAAASLSALNKGKEIHG-FIFRKGFMLEGSTVNSLVDMYACCGSLENAY 469

Query: 506 EVIKNMPMKPNSIV-WGALLGACRVHRDAEMA 536
           +V   +  +  S+V W  ++ A  +H   + A
Sbjct: 470 KVF--ICTRSKSLVLWTTMINAYGMHGRGKAA 499



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 32/268 (11%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M   GV   S T   VL AC  ++D+  G   H  + +C     + + N+L  MYA C +
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 267 MGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
           +  A ++F  +  + DV+SW +I++ Y   GQ                            
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQC--------------------------- 93

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
                EAL LFREMQ + +  + +T+V+ L AC +    +LG  +   I K+    D++V
Sbjct: 94  ----MEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYV 149

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            NAL+ M+ + G +  A R+F E+  KD  TW +MI G   NG  +++L  F  +  A++
Sbjct: 150 ANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANL 209

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFA 473
            PDEV+ + +L+A    G +  G+E  A
Sbjct: 210 KPDEVSLISILAASGRLGYLLNGKEIHA 237



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 3/189 (1%)

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M+   +  D FT   +L AC  +  +  G  +   I K    + +FV N+L+ MY KC D
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 399 VEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
           +  A+++F  M  R D  +W ++I   ++NG   ++L +F +M +A +  +  T V  L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           AC  +     G E  A +   + +  +      +V +  R G ++ A  +   +  K N 
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQV-LDVYVANALVAMHVRFGKMSYAARIFDELDEKDN- 178

Query: 518 IVWGALLGA 526
           I W +++  
Sbjct: 179 ITWNSMIAG 187


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/702 (34%), Positives = 382/702 (54%), Gaps = 31/702 (4%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           LI      + +++ KQ+H+  I+ G L N  + N  +    S+ G++ Y  K+F K+ + 
Sbjct: 81  LIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLY-SKCGELDYTIKLFDKMSQR 139

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           ++  W ++I G++     +  +  +  M         +    +L+  T   A++FG ++H
Sbjct: 140 NMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVH 199

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
           C V+K GF   +FV + L   Y  CGE+  A   F+     D V W +M  G+ +   F 
Sbjct: 200 CLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFK 259

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           +    + +M    V      +   LSAC+ LK    GK  H  + +        + NALT
Sbjct: 260 KALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALT 319

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMY+  G+M  A  +F    + D IS  ++                            TA
Sbjct: 320 DMYSKSGDMVSASNVFQ--IHSDCISIVSL----------------------------TA 349

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           +IDGY+ +++  +AL+ F +++   I P+EFT  S++ ACAN   LE G  +   + K  
Sbjct: 350 IIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFN 409

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
            K D FV + L+DMY KCG  + + ++F E+   D+  W  ++   + +G G  +++ F+
Sbjct: 410 FKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFN 469

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
            M+   + P+ VT+V +L  C+H GMV++G  YF+ M   +G+ P E HY C++DLLGRA
Sbjct: 470 GMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRA 529

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G L EA + I NMP +PN   W + LGAC++H D E A+ AA ++++L+P+N   +VLL 
Sbjct: 530 GKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLS 589

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           NIYA   +W++ + LR+MI D  + K PG S +++    H F   D SHPQ KEIY KLD
Sbjct: 590 NIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLD 649

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
            +   +K +GY+P    V +D+ +  KE+ ++ HSE++A+AF L++   G+ I + KNLR
Sbjct: 650 NLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLR 709

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C DCH   K +S V +R +IVRD +RFHHF +GSCSC DYW
Sbjct: 710 VCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 198/420 (47%), Gaps = 38/420 (9%)

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           D  T   L++ + R   +  GK+LH  +++ G   + F+ N  ++ Y  CGE+D    +F
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLF 133

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233
           D   + ++V+W ++ +G+    +F E    F +M  +G + T   +  VL AC  L  + 
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
            G + H  V +C     L + + LTDMY+ CGE+  A + F  +  KD + WT+++ G++
Sbjct: 194 FGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFV 253

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
             G                                F++ALT + +M T ++  D+  + S
Sbjct: 254 KNGD-------------------------------FKKALTAYMKMVTDDVFIDQHVLCS 282

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
            L+AC+ L A   G+ +   I K   + + F+GNAL DMY K GD+  A  VF+  +  D
Sbjct: 283 TLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQ--IHSD 340

Query: 414 KF---TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
                + TA+I G       +K+L  F  + R  I P+E T+  ++ AC +   ++ G +
Sbjct: 341 CISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQ 400

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
               + ++   + +      +VD+ G+ G  + ++++   +   P+ I W  L+G    H
Sbjct: 401 LHGQV-VKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIE-NPDEIAWNTLVGVFSQH 458



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 197/452 (43%), Gaps = 75/452 (16%)

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           I T    G+V + +  F  S K  V+       G + +  F   + LFG   +   L  +
Sbjct: 25  IDTTSSIGDVFLLKEYFSPSNKHFVL------EGVEEIISFSFLKNLFGSGHK---LSDT 75

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T+  ++   A+ K+L+ GK+ H  +     +PN  L N   ++Y+ CGE+ + +++F  
Sbjct: 76  KTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDK 135

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           +  ++++SWT+I+TG+ +                                +RF+EAL+ F
Sbjct: 136 MSQRNMVSWTSIITGFAHN-------------------------------SRFQEALSSF 164

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            +M+       +F + S+L AC +LGA++ G  V   + K     ++FVG+ L DMY KC
Sbjct: 165 CQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKC 224

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G++  A + F EM  KD   WT+MI G   NG   K+L  + +M+   +  D+      L
Sbjct: 225 GELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTL 284

Query: 457 SACT-----------HTGMVDEGREY-------FADMTIQHGIEPN-----EAHYGC--- 490
           SAC+           H  ++  G EY         DM  + G   +     + H  C   
Sbjct: 285 SACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISI 344

Query: 491 -----MVDLLGRAGHLNEALEV---IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
                ++D       + +AL     ++   ++PN   + +L+ AC      E       Q
Sbjct: 345 VSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQ 404

Query: 543 ILELDPDNEA-VYVLLCNIYAACNRWDNFREL 573
           +++ +   +  V   L ++Y  C  +D+  +L
Sbjct: 405 VVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQL 436



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 137/301 (45%), Gaps = 36/301 (11%)

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G V + ++YF   P   + +    ++G   +  F     LF    + +   D  T+  ++
Sbjct: 32  GDVFLLKEYFS--PSNKHFV----LEGVEEIISFSFLKNLF---GSGHKLSDTKTVAHLI 82

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
              A    L  G+ +   + +     + F+ N  +++Y KCG+++   ++F +M +++  
Sbjct: 83  QTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMV 142

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           +WT++I G A N    ++L  F QM     I  +     VL ACT  G +  G +    +
Sbjct: 143 SWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHC-L 201

Query: 476 TIQHGIEPNEAHYGC-------MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
            ++ G       +GC       + D+  + G L++A +  + MP K ++++W +++    
Sbjct: 202 VVKCG-------FGCELFVGSNLTDMYSKCGELSDACKAFEEMPCK-DAVLWTSMIDGFV 253

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYV---LLCNIYAACN--RWDNF-RELRQMILDRGI 582
            + D + A  A  +++  D     V++   +LC+  +AC+  +  +F + L   IL  G 
Sbjct: 254 KNGDFKKALTAYMKMVTDD-----VFIDQHVLCSTLSACSALKASSFGKSLHATILKLGF 308

Query: 583 K 583
           +
Sbjct: 309 E 309


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/515 (45%), Positives = 322/515 (62%), Gaps = 34/515 (6%)

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
           R+   P + T   +L AC +L  L  G+  H    +  +V  + ++N+L   Y ACG   
Sbjct: 113 RRLAPPDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACG--- 169

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP--ERDYVLWTAMIDGYLRV 326
               +F                        + A + FD++P  ER+ V W ++++G+   
Sbjct: 170 ----LF------------------------ESAHRVFDEIPVLERNLVSWNSVMNGFAAN 201

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
            R  E LT+FRE   +++ PD FTIVS+LTACA +GAL LG  V  +  K  +  +  VG
Sbjct: 202 GRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVG 261

Query: 387 NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
           NALID+Y KCG VE A +VF EM + +   +WT++IVGLA NG G  +L++F  M R  +
Sbjct: 262 NALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERL 321

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
           IP ++T VGVL AC+H G+VD+G  YF +M  ++GI P   H GCMVDLLGRAG + EA 
Sbjct: 322 IPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAH 381

Query: 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
             I  MP++PN++VW  LLGAC +H+  E+ E A  +++ELDP +   YVLL N+YAA  
Sbjct: 382 NYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVG 441

Query: 566 RWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625
           RW +   LR+ +   G++K PG S++E+   V+EFV GD+SHP++ +IY  L E+   L+
Sbjct: 442 RWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLR 501

Query: 626 FVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHR 685
             GY+P  S V  D+ EE+KE A+  HSE+LA+AF L+ S PG  IRIVKNLRMC DCH 
Sbjct: 502 CQGYVPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHL 561

Query: 686 MAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + KL+S VYDRE+IVRD++RFHHFK G CSCKDYW
Sbjct: 562 VIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 194/412 (47%), Gaps = 47/412 (11%)

Query: 28  SMHQLKQIHSQTIKLG--LLTNPTVQNKLVTFCCSEKG---DMKYACKVFR-KIPRPSVC 81
           S+   KQIH++ ++     L++P +   L+    S +     + YA  V    +P P   
Sbjct: 30  SVAAAKQIHARALRAAGVPLSHPLLAKHLLFHLASLRAGPPPLLYAVTVLSCLLPDPDPF 89

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP-DNYTFPFLLKGFTRDIAVEFGKELHCH 140
             NT++    RI +      I L + +  + P D +T+P LL+  TR +A+  G+ LH  
Sbjct: 90  SLNTVL----RIAASSAHPRIALALHRRRLAPPDTHTYPPLLQACTRLLALREGESLHAE 145

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD--VSYKDDVVTWNAMFSGYKRVKQFD 198
             K G  + VFV+N+L+  Y  CG  + A  +FD     + ++V+WN++ +G+    + +
Sbjct: 146 AAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPN 205

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E   +F E     ++P   TIV VL+ACA++  L +G+R H +  +  +V N  + NAL 
Sbjct: 206 EVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALI 265

Query: 259 DMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
           D+YA CG +  A ++F  +   + V+SWT+++ G    G        F            
Sbjct: 266 DLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNG--------FG----------- 306

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDK 376
                       ++AL LF  M+   + P + T+V +L AC++ G ++ G  +     DK
Sbjct: 307 ------------KDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDK 354

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
             +   I     ++D+  + G VE+A      M +  +   W  ++   A++
Sbjct: 355 YGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMH 406



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 165/356 (46%), Gaps = 28/356 (7%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF--CCSEKGD 64
           ++PP T T   PL+       ++ + + +H++  K GL+    V+N LV     C   G 
Sbjct: 115 LAPPDTHTY-PPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGAC---GL 170

Query: 65  MKYACKVFRKIP--RPSVCLWNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFL 121
            + A +VF +IP    ++  WN+++ G++  +   N VL I+ + L++D+ PD +T   +
Sbjct: 171 FESAHRVFDEIPVLERNLVSWNSVMNGFA-ANGRPNEVLTIFRETLEADLMPDGFTIVSV 229

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDD 180
           L       A+  G+ +H    K G   +  V NALI  Y  CG V+ A  +F+ +     
Sbjct: 230 LTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVART 289

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           VV+W ++  G        +  +LFG MER+ ++PT +T+V VL AC+    +D G    R
Sbjct: 290 VVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDG---FR 346

Query: 241 YVKECK----IVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINR 295
           Y  E +    I P +     + D+    G +  A      +    + + W  ++      
Sbjct: 347 YFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMH 406

Query: 296 GQVDMARQYFDQMPE------RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            ++++    + ++ E       DYVL + +   Y  V R+ +A  L + M T  +R
Sbjct: 407 KKLELGEAAWARLVELDPGHSGDYVLLSNL---YAAVGRWADAHVLRKTMATHGVR 459


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/591 (39%), Positives = 351/591 (59%), Gaps = 7/591 (1%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           ++ G +  A  +F K+P+   C WN+MI G+ +       ++ +  M       + Y+F 
Sbjct: 96  TKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFG 155

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
             L        ++ G ++H  V +  + S V++ +AL+  Y  CG V+ A+ +FD     
Sbjct: 156 SALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVR 215

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
             V+WN++ + Y++    DE  K+F EM + GV P  VT+  V+SACA +  +  G++ H
Sbjct: 216 SRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIH 275

Query: 240 RYVKECKIVPN-LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
             V +C    N LIL NAL DMYA C  +  A  IF  +  + V+S T++V+GY    +V
Sbjct: 276 ARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKV 335

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
            +AR  F  M  +D + W A+I G  +     EAL LFR ++  ++ P  +T  ++L AC
Sbjct: 336 KVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNAC 395

Query: 359 ANLGALELGEWVKTYIDKNKVK------NDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           ANL  L+LG    +++ K+  +      +D+FVGN+LIDMY KCG VE   RVF+ ML K
Sbjct: 396 ANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEK 455

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D  +W AMIVG A NG G+K+L++F +ML +   PD VT +GVL AC+H G++DEGR YF
Sbjct: 456 DCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYF 515

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
             MT QHG+ P + HY CMVDLLGRAG+L EA  +I+ M M+P++IVWG+LL AC+VHR+
Sbjct: 516 RSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRN 575

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE 592
            ++ E   K++LE+DP+N   YVLL N+YA    W N   +R+++  RG+ K PGCS IE
Sbjct: 576 IQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIE 635

Query: 593 MNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEE 643
           + G ++ F+  DK H + KEIY+ L  +   +K  GY+P +     D  EE
Sbjct: 636 IQGELNVFMVKDKRHARKKEIYMVLRTILQQMKQAGYVPYVGSNEFDEDEE 686



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 225/498 (45%), Gaps = 108/498 (21%)

Query: 98  NGVLIYL--DMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA 155
           NG++ +L  D+L  D  P    F  LL    R  +      +H  ++K  F S  F+QN 
Sbjct: 4   NGLVKHLKGDLLFLDSSP----FSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNR 59

Query: 156 LISTYCLCGEVDMARGIFD-------------------VSYKDDVV------------TW 184
           LI  Y  CG VD+AR +FD                     + DD V            +W
Sbjct: 60  LIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSW 119

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N+M SG+++  +FDE    F +M   G L    +    LSACA L+DL +G + H  V  
Sbjct: 120 NSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYR 179

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
              + ++ + +AL DMY+ CG + +A  +F  +  +  +SW +++T Y   G VD     
Sbjct: 180 SNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVD----- 234

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                                     EAL +F EM    + PDE T+ S+++ACA + A+
Sbjct: 235 --------------------------EALKIFVEMIKCGVEPDEVTLASVVSACATISAI 268

Query: 365 ELGEWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRV------------------ 405
           + G+ +   + K ++ +ND+ +GNAL+DMY KC  + +A+ +                  
Sbjct: 269 KEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSG 328

Query: 406 -------------FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
                        F  M+ KD  TW A+I G   NG  +++L +F  + R S+ P   T+
Sbjct: 329 YAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTF 388

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGI-----EPNEAHYG-CMVDLLGRAGHLNEALE 506
             +L+AC +   +  GR+  + + ++HG      E ++   G  ++D+  + G +     
Sbjct: 389 GNLLNACANLADLQLGRQAHSHV-LKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCR 447

Query: 507 VIKNMPMKPNSIVWGALL 524
           V ++M ++ + + W A++
Sbjct: 448 VFQHM-LEKDCVSWNAMI 464


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/718 (34%), Positives = 391/718 (54%), Gaps = 68/718 (9%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF  +P+ +V  W +++ GY +  +  + + ++  M    V P+ +TF  +L       A
Sbjct: 157 VFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGA 216

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           V+ G+ +H   +KFG  S+VFV N+LI+ Y  CG V+ A+ +F      D+V+WN + +G
Sbjct: 217 VDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAG 276

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
               +   E  +LF +        +  T   V+  CA LK L + ++ H  V +     +
Sbjct: 277 LLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSD 336

Query: 251 LILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
             +  A+ D Y+ CGE+  A  IF  +  +++V+SWTA++ G I    + +A   F +M 
Sbjct: 337 GNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMR 396

Query: 310 ERDY-----------------------------------VLWTAMIDGYLRVNRFREALT 334
           E +                                     + TA++  Y ++    EAL+
Sbjct: 397 EDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALS 456

Query: 335 LFR-------------------------------EMQTSNIRPDEFTIVSILTACANLGA 363
           +F+                               +M    ++P+EFTI S + ACA+  A
Sbjct: 457 IFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTA 516

Query: 364 -LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            ++ G        K + ++ I VG+AL+ MY + G ++ A+ VF     +D  +W +MI 
Sbjct: 517 GIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMIS 576

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A +G+  ++LD F QM    I  D  T++ V+  CTH G+V EG++YF  M + H I 
Sbjct: 577 GYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNIS 636

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   HY CMVDL  RAG L+E + +I+ MP    ++VW  LLGACRVH++ E+ ++AA++
Sbjct: 637 PTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQK 696

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           +L L+PD+ A YVLL NIYAA  RW    E+R+++  + +KK  GCS I++   VH F+A
Sbjct: 697 LLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIA 756

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
            DKSHP +++IY KL  MT+ LK  GY P+ S V  D+ EE KE  +  HSE+LA+AFGL
Sbjct: 757 CDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGL 816

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I++ P   ++IVKNLR+C DCH + K+VS++ DRE+I+RD +RFHHF  G+CSC D+W
Sbjct: 817 IATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 185/394 (46%), Gaps = 41/394 (10%)

Query: 134 GKELHCHVLKFGFD-SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           G++LHC  +K GFD + V V  AL+  Y  CG V+  R +F+   K +VVTW ++ +GY 
Sbjct: 118 GEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYV 177

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           + +   +   LF  M  +GV P   T   VLSA A    +D+G+R H    +      + 
Sbjct: 178 QGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVF 237

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG-YINRGQVDMARQYFDQMPER 311
           + N+L +MY+ CG +  A  +F  ++ +D++SW  ++ G  +N  Q+             
Sbjct: 238 VCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQL------------- 284

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
                              EAL LF + + S  +  + T  +++  CANL  L L   + 
Sbjct: 285 -------------------EALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLH 325

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIVGLAINGHG 430
           + + K+   +D  V  A++D Y KCG+++ A  +F  M   ++  +WTAMI G   N   
Sbjct: 326 SCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADI 385

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
             +  +FS+M   ++ P+E TY  VL+A     ++ +          QH      A    
Sbjct: 386 PLAAALFSRMREDNVKPNEFTYSTVLTASIPI-LLPQIHAQIIKTNYQHAPSVGTA---- 440

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           ++    + G+  EAL + K +  K + + W A+L
Sbjct: 441 LLASYSKLGNTEEALSIFKMIDHK-DVVAWSAML 473



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 154/303 (50%), Gaps = 14/303 (4%)

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G    R +K C ++P+ +    L  +   CG               +V   TA+V  Y+ 
Sbjct: 99  GAAVSRVLKVCGLIPDRVSGEQLHCLCVKCG-----------FDRAEVGVGTALVDMYMK 147

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G V+  R  F+ MP+R+ V WT+++ GY++     + + LF  M+   + P+ FT  S+
Sbjct: 148 CGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSV 207

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           L+A A+ GA++LG  V     K   ++ +FV N+LI+MY KCG VE+A+ VFR+M  +D 
Sbjct: 208 LSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDM 267

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFA 473
            +W  ++ GL +N H  ++L +F    RAS+    + TY  V+  C +   +   R+  +
Sbjct: 268 VSWNTLMAGLLLNEHQLEALQLFHDS-RASMAKLSQSTYSTVIKLCANLKQLALARQLHS 326

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
              ++HG   +      ++D   + G L++A  +   MP   N + W A++G C  + D 
Sbjct: 327 -CVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADI 385

Query: 534 EMA 536
            +A
Sbjct: 386 PLA 388



 Score = 42.4 bits (98), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 85/225 (37%), Gaps = 40/225 (17%)

Query: 16  ETPLISPIETCES----MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKV 71
           E  + S I+ C S    + Q +Q H+ +IK        V + LVT   + KG +  A  V
Sbjct: 501 EFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMY-ARKGSIDSARIV 559

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           F +     +  WN+MI GY++    K  +  +  M    +  D  TF  ++ G T    V
Sbjct: 560 FERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLV 619

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           + G++         FDS V   N                          +  ++ M   Y
Sbjct: 620 KEGQQY--------FDSMVMDHN----------------------ISPTMEHYSCMVDLY 649

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTI-VLVLSACAKLKDLDVG 235
            R  + DET  L   M      P    +   +L AC   K++++G
Sbjct: 650 SRAGKLDETMNLIEGMP----FPAGAMVWRTLLGACRVHKNVELG 690


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/733 (34%), Positives = 393/733 (53%), Gaps = 76/733 (10%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD+  A  +F +IP P +  +N +I+ YS         L      +   +P+NYTFPF+L
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K  +  + +   + +HCH  + G  + +FV  AL+  Y  C     A  +F      DVV
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY- 241
            WNAM +GY    ++ +T      M+     P + T+V +L   A+   L  G+  H Y 
Sbjct: 197 AWNAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAYS 255

Query: 242 VKECKI----------------------------------VPNLILENALTDMYAACGEM 267
           V+ C +                                  V N +  +AL   +  CG M
Sbjct: 256 VRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRM 315

Query: 268 GFALEIFGNIK----------------------------------------NKDVISWTA 287
             A  +F ++                                         + D+ +  +
Sbjct: 316 LEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNS 375

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           +++ Y   G +D A   FDQM  +D V ++A++ GY++  +  EA  +FR+MQ  N++PD
Sbjct: 376 LLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPD 435

Query: 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407
             T+VS++ AC++L AL+ G+     +    + ++  + NALIDMY KCG ++ ++++F 
Sbjct: 436 VATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFD 495

Query: 408 EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
            M  +D  +W  MI G  I+G G ++  +F  M   +  PD+VT++ ++SAC+H+G+V E
Sbjct: 496 VMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTE 555

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
           G+ +F  M  ++GI P   HY  MVDLL R G L+EA + I+ MP+K +  VWGALLGAC
Sbjct: 556 GKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGAC 615

Query: 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPG 587
           RVH++ ++ +  +  I +L P+    +VLL NI++A  R+D   E+R +  ++G KK+PG
Sbjct: 616 RVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPG 675

Query: 588 CSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKER 647
           CS IE+NG +H F+ GD+SH Q+ EIY +LD +  D+  +GY  D S V  DV EE+KE+
Sbjct: 676 CSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEK 735

Query: 648 AVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFH 707
           A+  HSEKLA+AFG+++     TI + KNLR+C DCH + K +++V  R +IVRD  RFH
Sbjct: 736 ALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFH 795

Query: 708 HFKHGSCSCKDYW 720
           HFK+G CSC D+W
Sbjct: 796 HFKNGQCSCGDFW 808



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 161/368 (43%), Gaps = 39/368 (10%)

Query: 162 LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221
           +CG++ +AR +FD      +  +NA+   Y         R       R+   P + T   
Sbjct: 75  ICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPF 134

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           VL AC+ L DL   +  H +     +  +L +  AL D+YA C     A  +F  +  +D
Sbjct: 135 VLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARD 194

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V++W A++ GY   G                               ++ + +     MQ 
Sbjct: 195 VVAWNAMLAGYALHG-------------------------------KYSDTIACLLLMQD 223

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDK----NKVKNDIFVGNALIDMYCKCG 397
            +  P+  T+V++L   A  GAL  G  V  Y  +    +  K+ + VG AL+DMY KCG
Sbjct: 224 DHA-PNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCG 282

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG-VL 456
            +  A RVF  M  +++ TW+A++ G  + G   ++  +F  ML   +     T V   L
Sbjct: 283 HLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASAL 342

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
            AC +   +  G++  A +  + G+  +      ++ +  +AG +++A  +   M +K +
Sbjct: 343 RACANLSDLCLGKQLHA-LLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVK-D 400

Query: 517 SIVWGALL 524
           ++ + AL+
Sbjct: 401 TVSYSALV 408


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/731 (33%), Positives = 388/731 (53%), Gaps = 51/731 (6%)

Query: 2   FSNSSISPPSTLTQETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC 58
           F    +   S +     L++ +  C   E + +   +H   +KLGL     V N L+   
Sbjct: 190 FREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLI--- 246

Query: 59  CSEKGDMKYACK-------VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD- 110
                DM   C+       +F K  + ++  WN+MI GY+R +       +   M   D 
Sbjct: 247 -----DMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDA 301

Query: 111 -VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
            ++ D +T   +L        ++  KELH +  + G  S+  V NA I+ Y  CG +  +
Sbjct: 302 KMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSS 361

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229
             +FD+     V +WNA+  GY +     +   L+ +M   G+ P   TI  +L AC+++
Sbjct: 362 ERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421

Query: 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289
           K L  G+  H +     +  +  +  +L  +Y  CG+  FA ++                
Sbjct: 422 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGK-PFAAQVL--------------- 465

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
                          FD M  R  V W  MI GY +     EA+ LFR+M +  I+P E 
Sbjct: 466 ---------------FDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEI 510

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
            I+ +  AC+ L AL LG+ +  +  K  +  DIFV +++IDMY K G +  +QR+F  +
Sbjct: 511 AIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRL 570

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
             KD  +W  +I G  I+G G ++L++F +MLR  + PD+ T+ G+L AC+H G+V++G 
Sbjct: 571 REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGL 630

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529
           EYF  M   H IEP   HY C+VD+LGRAG +++AL +I+ MP  P+S +W +LL +CR+
Sbjct: 631 EYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRI 690

Query: 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS 589
           H +  + E  A ++LEL+P+    YVL+ N++A   +WD+ R +R  + D G++K  GCS
Sbjct: 691 HGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCS 750

Query: 590 MIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAV 649
            IE+ G VH F+ GD+  P+ +E+      +   +  +GY PD   V  D+ EEDK   +
Sbjct: 751 WIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGIL 810

Query: 650 YQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHF 709
             HSEKLA++FGL+++  G+ +R+ KNLR+C DCH  AK +S V +R+++VRD  RFHHF
Sbjct: 811 RGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHF 870

Query: 710 KHGSCSCKDYW 720
           + G CSC DYW
Sbjct: 871 RDGICSCGDYW 881



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 216/453 (47%), Gaps = 42/453 (9%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           IE    +H++    +Q        N  V N  +    S  G    +  VF K+ R ++  
Sbjct: 14  IEVGRRLHEMVSASTQ------FCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQ 67

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           WN ++  Y+R +  ++ + I+ +++  ++ +PDN+T P ++K     + +  G+ +H   
Sbjct: 68  WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA 127

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
            K    S VFV NALI+ Y  CG V+ A  +F+   + ++V+WN++  G+       E+ 
Sbjct: 128 TKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESF 187

Query: 202 KLFGEM--ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             F EM    +  +P   T+V VL  CA  +D++ G   H    +  +   L++ N+L D
Sbjct: 188 NAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLID 247

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY+ C  +  A  +F     K+++SW +++ GY    + D+ R ++              
Sbjct: 248 MYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAR--EEDVCRTFY-------------- 291

Query: 320 IDGYLRVNRFREALTLFREMQT--SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                          L ++MQT  + ++ DEFTI+++L  C     L+  + +  Y  ++
Sbjct: 292 ---------------LLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRH 336

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            ++++  V NA I  Y +CG +  ++RVF  M  K   +W A++ G A N    K+LD++
Sbjct: 337 GLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLY 396

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            QM  + + PD  T   +L AC+    +  G E
Sbjct: 397 LQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEE 429



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 220/489 (44%), Gaps = 56/489 (11%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA-LISTYCLCGEVDMARGIFDVSYKD 179
           LL+   +   +E G+ LH  V       + FV N  +I+ Y +CG    +R +FD   + 
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEM----ERKGVLPTSVTIVLVLSACAKLKDLDVG 235
           ++  WNA+ S Y R + F++   +F E+    E K   P + T+  V+ ACA L DL +G
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHK---PDNFTLPCVIKACAGLLDLGLG 120

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           +  H    +  +V ++ + NAL  MY  CG +  A+++F ++  ++++SW +I+ G+   
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSE- 179

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS--NIRPDEFTIVS 353
                                    +G+L     +E+   FREM     +  PD  T+V+
Sbjct: 180 -------------------------NGFL-----QESFNAFREMLVGEESFVPDVATLVT 209

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L  CA    +E G  V     K  +  ++ V N+LIDMY KC  + +AQ +F +  +K+
Sbjct: 210 VLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKN 269

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLR--ASIIPDEVTYVGVLSACTHTGMVDEGREY 471
             +W +MI G A      ++  +  +M    A +  DE T + VL  C     +   +E 
Sbjct: 270 IVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKEL 329

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531
               + +HG++ NE      +    R G L  +  V   M  K  S  W ALL     + 
Sbjct: 330 HG-YSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVS-SWNALLCGYAQNS 387

Query: 532 DAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNRWDNF---RELRQMILDRGIKKTP 586
           D   A     Q+ +  LDPD    +  + ++  AC+R  +     E+    L  G+   P
Sbjct: 388 DPRKALDLYLQMTDSGLDPD----WFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDP 443

Query: 587 --GCSMIEM 593
             G S++ +
Sbjct: 444 FIGISLLSL 452



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 165/360 (45%), Gaps = 37/360 (10%)

Query: 221 LVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
           ++L AC + KD++VG+R H  V    +   + +L   +  MY+ CG              
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCG-------------- 48

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
                                +R  FD++  ++   W A++  Y R   F +A+++F E+
Sbjct: 49  -----------------SPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 91

Query: 340 -QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
              +  +PD FT+  ++ ACA L  L LG+ +     K  + +D+FVGNALI MY KCG 
Sbjct: 92  ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL 151

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML--RASIIPDEVTYVGVL 456
           VE+A +VF  M  ++  +W ++I G + NG   +S + F +ML    S +PD  T V VL
Sbjct: 152 VEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVL 211

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
             C     +++G      + ++ G+         ++D+  +   L+EA +++ +   K N
Sbjct: 212 PVCAGEEDIEKGMAVHG-LAVKLGLNEELMVNNSLIDMYSKCRFLSEA-QLLFDKNDKKN 269

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
            + W +++G      D        +++   D   +A    + N+   C      + L+++
Sbjct: 270 IVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKEL 329


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/717 (35%), Positives = 381/717 (53%), Gaps = 89/717 (12%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM 65
           S++PPS+  +   L  P         L    S T  L         + +       +GD+
Sbjct: 33  SVTPPSSRHRLLALRYPSRLLAPT-PLASARSHTCSL---------STVAVAAAVRRGDL 82

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             A + F   PR +   +N ++ GY+R            D + +   PD           
Sbjct: 83  TGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT---PD----------- 128

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
               AV +   L CH     F S               G+ D AR +F      DVV+WN
Sbjct: 129 ----AVSYNTLLSCH-----FAS---------------GDADGARRLFASMPVRDVVSWN 164

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
            M SG  +    +E + +F  M                                      
Sbjct: 165 TMVSGLSKSGAVEEAKAVFLAMP------------------------------------- 187

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQY 304
             V N +  NA+   +A   +M  A E F N   K D + WTA+V+GY++ G V  A +Y
Sbjct: 188 --VRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEY 245

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGA 363
           F+ MP R+ V W A++ GY++ +   +AL LFR M + +N++P+  T+ S+L  C+NL A
Sbjct: 246 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSA 305

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           L  G+ +  +  K  +  ++ VG +L+ MYCKCGD+  A ++F EM  +D   W AMI G
Sbjct: 306 LGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISG 365

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            A +G G +++++F +M    + P+ +T+V VL+AC HTG+ D G   F  M   +GIEP
Sbjct: 366 YAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEP 425

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              HY CMVDLL RAG L  A+++I++MP +P+   +G LL ACRV+++ E AE+AA ++
Sbjct: 426 RVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKL 485

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           +E DP +   YV L NIYA  N+WD+   +R+ + D  + KTPG S IE+ GV+HEF + 
Sbjct: 486 IEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSN 545

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           D+ HPQ   I+ KL ++   +K +GY+PD+  V  DV E  K + + +HSEKLA++FGLI
Sbjct: 546 DRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLI 605

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+ PG+T+RI KNLR+C DCH  AK++S + DRE+I+RD TRFHHF+ G CSC DYW
Sbjct: 606 STAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/569 (41%), Positives = 332/569 (58%), Gaps = 41/569 (7%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N L+S +  CG++D A  +F      DV +WN M SG  +    +E   +F  M  +   
Sbjct: 76  NTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR--- 132

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
                                               N +  NA+    A+ G+MG A  +
Sbjct: 133 ------------------------------------NAVSWNAMVAARASSGDMGAAENL 156

Query: 274 FGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           F N   K D I WTA+V+GY++ G V  A +YF  MP R+ V W A++ GY++ +R  +A
Sbjct: 157 FRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDA 216

Query: 333 LTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           L +F+ M + + ++P+  T+ S+L  C+NL AL  G  V  +  K  +   I VG +L+ 
Sbjct: 217 LRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLS 276

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MYCKCGD++ A ++F EM  KD   W AMI G A +G G K++ +F +M    ++PD +T
Sbjct: 277 MYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWIT 336

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
            + VL+AC HTG+ D G + F  M   + IEP   HY CMVDLL RAG L  A+ +I +M
Sbjct: 337 LLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSM 396

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P +P+   +G LL ACRV+++ E AE AA++++E DP N   YV L NIYA  NRWD+  
Sbjct: 397 PFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVS 456

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            +R+ + D  + KTPG S +E+ GV HEF + D+ HPQ   I+ KLD +   +K +GY P
Sbjct: 457 RVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSP 516

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           D+     DV E  K + + +HSEKLA+AFGLIS+ PG+T+RI KNLR+C DCH  AKL+S
Sbjct: 517 DLDFALHDVEESLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLIS 576

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + DRE+I+RD TRFHHF+ G CSC DYW
Sbjct: 577 KIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 116/216 (53%), Gaps = 2/216 (0%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFP 119
           + G+++ A + FR +P  ++  WN ++ GY +     + + ++  M++ + V+P+  T  
Sbjct: 178 DTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLS 237

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L G +   A+ FG+++H   +K     S+ V  +L+S YC CG++D A  +FD  +  
Sbjct: 238 SVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTK 297

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           D+V WNAM SGY +     +  KLF +M+ +GV+P  +T++ VL+AC      D G +  
Sbjct: 298 DIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCF 357

Query: 240 RYVKEC-KIVPNLILENALTDMYAACGEMGFALEIF 274
             ++E   I P +   + + D+    G +  A+ + 
Sbjct: 358 ETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMI 393



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 159/380 (41%), Gaps = 65/380 (17%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           S  G +  A ++F  IP P    +NT++  +           ++  M   DV   N    
Sbjct: 52  SGPGRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNT--- 108

Query: 120 FLLKGFTRDIAVEFGKEL------------------HCHVLKFGFDSSVF---------- 151
            ++ G +++ A+E  + +                         G   ++F          
Sbjct: 109 -MVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAI 167

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM-ERK 210
           +  A++S Y   G V  A   F      ++V+WNA+ +GY +  +  +  ++F  M E  
Sbjct: 168 LWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDA 227

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
            V P   T+  VL  C+ L  L  G++ H++  +  +  ++ +  +L  MY  CG++  A
Sbjct: 228 IVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDA 287

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            ++F  +  KD+++W A+++GY   G                                 R
Sbjct: 288 CKLFDEMHTKDIVAWNAMISGYAQHGG-------------------------------GR 316

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNAL 389
           +A+ LF +M+   + PD  T++++LTAC + G  + G +  +T  +   ++  +   + +
Sbjct: 317 KAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCM 376

Query: 390 IDMYCKCGDVEKAQRVFREM 409
           +D+ C+ G +E+A  +   M
Sbjct: 377 VDLLCRAGLLERAVNMIHSM 396


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/738 (34%), Positives = 394/738 (53%), Gaps = 92/738 (12%)

Query: 43  GLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS---VCLWNTMIKGYSRIDSHKNG 99
           G  +N  + N LV    S  G ++ A  +F +I +     V  WN+++  + +  +    
Sbjct: 147 GFESNVFICNALVAMY-SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTA 205

Query: 100 VLIYLDML------KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           + ++  M        ++ R D  +   +L       AV   KE+H + ++ G    VFV 
Sbjct: 206 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVG 265

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK--- 210
           NALI  Y  CG ++ A  +F++    DVV+WNAM +GY +   F    +LF  M ++   
Sbjct: 266 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIP 325

Query: 211 --------------------------------GVLPTSVTIVLVLSACAKLKDLDVGKRA 238
                                           G LP  VTI+ VLSACA L     G   
Sbjct: 326 LDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI 385

Query: 239 HRY-VKECKIV---------PNLILENALTDMYAACGEMGFALEIFGNI--KNKDVISWT 286
           H Y +K C +           +L++ NAL DMY+ C     A  IF +I  + ++V++WT
Sbjct: 386 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 445

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QTSNI 344
            ++ G+          QY D                        +AL LF EM  +   +
Sbjct: 446 VMIGGH---------AQYGDS----------------------NDALKLFVEMISEPYGV 474

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND--IFVGNALIDMYCKCGDVEKA 402
            P+ +TI  IL ACA+L A+ +G+ +  Y+ ++   +    FV N LI+MY KCGDV+ A
Sbjct: 475 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 534

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           + VF  M +K   +WT+M+ G  ++G G ++LD+F +M +A  +PD++T++ VL AC+H 
Sbjct: 535 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 594

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           GMVD+G  YF  M+  +G+ P   HY   +DLL R G L++A + +K+MPM+P ++VW A
Sbjct: 595 GMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVA 654

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL ACRVH + E+AE A  +++E++ +N+  Y L+ NIYA   RW +   +R ++   GI
Sbjct: 655 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGI 714

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK PGCS ++       F  GD+SHP + +IY  L+ +   +K +GY+P+ +    DV E
Sbjct: 715 KKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDE 774

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E+K   + +HSEKLA+A+GL+++ PG  IRI KNLR+C DCH     +S + D E++VRD
Sbjct: 775 EEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRD 834

Query: 703 KTRFHHFKHGSCSCKDYW 720
            +RFHHFK+GSCSC  YW
Sbjct: 835 PSRFHHFKNGSCSCGGYW 852



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 152/502 (30%), Positives = 251/502 (50%), Gaps = 41/502 (8%)

Query: 63  GDMKYACKVFRKI-PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
           G   YA  V  ++ P P+V  WN +I+ + +     + + +   ML++  R D++T P +
Sbjct: 65  GATDYALLVLERVTPSPAV-WWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHV 123

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK--- 178
           LK      +   G   H  +   GF+S+VF+ NAL++ Y  CG ++ A  IFD   +   
Sbjct: 124 LKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI 183

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEM----------ERKGVLPTSVTIVLVLSACAK 228
           DDV++WN++ S + +         LF +M          ER  +    ++IV +L AC  
Sbjct: 184 DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI----ISIVNILPACGS 239

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           LK +   K  H          ++ + NAL D YA CG M  A+++F  ++ KDV+SW A+
Sbjct: 240 LKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAM 299

Query: 289 VTGYINRGQVDMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           V GY   G    A + F  M +     D V WTA+I GY +     EAL +FR+M  S  
Sbjct: 300 VAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGS 359

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKV----------KNDIFVGNALIDMYC 394
            P+  TI+S+L+ACA+LGA   G  +  Y  KN +            D+ V NALIDMY 
Sbjct: 360 LPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYS 419

Query: 395 KCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRA--SIIPDEV 450
           KC   + A+ +F ++  +++   TWT MI G A  G  + +L +F +M+     + P+  
Sbjct: 420 KCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAY 479

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY--GCMVDLLGRAGHLNEALEVI 508
           T   +L AC H   +  G++  A   ++H    + A++   C++++  + G ++ A  V 
Sbjct: 480 TISCILMACAHLAAIRIGKQIHA-YVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVF 538

Query: 509 KNMPMKPNSIVWGALLGACRVH 530
            +M  K ++I W +++    +H
Sbjct: 539 DSMSQK-SAISWTSMMTGYGMH 559



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 197/480 (41%), Gaps = 75/480 (15%)

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           F S   +   ++++Y  CG  D A  + +       V WN +   + +  + D    +  
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 106

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
            M R G      T+  VL AC +L     G   H  +       N+ + NAL  MY+ CG
Sbjct: 107 RMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 166

Query: 266 EMGFALEIFGNIKNK---DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            +  A  IF  I  +   DVISW +IV+ ++       A   F +M              
Sbjct: 167 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKM-------------- 212

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
                      TL    + +N R D  +IV+IL AC +L A+   + V     +N    D
Sbjct: 213 -----------TLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 261

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREM------------------------------LRK 412
           +FVGNALID Y KCG +E A +VF  M                              +RK
Sbjct: 262 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 321

Query: 413 -----DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
                D  TWTA+I G +  G   ++L++F QM+ +  +P+ VT + VLSAC   G   +
Sbjct: 322 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 381

Query: 468 GREYFAD------MTIQH---GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NS 517
           G E  A       +T+ +   G + +   Y  ++D+  +      A  +  ++P++  N 
Sbjct: 382 GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 441

Query: 518 IVWGALLGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           + W  ++G    + D+  A ++  + I E        Y + C I  AC      R  +Q+
Sbjct: 442 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC-ILMACAHLAAIRIGKQI 500



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 162/358 (45%), Gaps = 25/358 (6%)

Query: 12  TLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLT----------NPTVQNKLVTFC 58
           +L     +IS +  C S+    Q   IH+ ++K  LLT          +  V N L+   
Sbjct: 359 SLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 418

Query: 59  CSEKGDMKYACKVFRKIP--RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS--DVRPD 114
            S+    K A  +F  IP    +V  W  MI G+++     + + ++++M+     V P+
Sbjct: 419 -SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPN 477

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKF-GFDSSV-FVQNALISTYCLCGEVDMARGI 172
            YT   +L       A+  GK++H +VL+   +DSS  FV N LI+ Y  CG+VD AR +
Sbjct: 478 AYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHV 537

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           FD   +   ++W +M +GY    +  E   +F +M + G +P  +T ++VL AC+    +
Sbjct: 538 FDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMV 597

Query: 233 DVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVT 290
           D G      +  +  + P         D+ A  G +  A +   ++      + W A+++
Sbjct: 598 DQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLS 657

Query: 291 GYINRGQVDMARQYFDQMPERDYV---LWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                  V++A    +++ E +      +T + + Y    R+++   +   M+ S I+
Sbjct: 658 ACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 715


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/680 (36%), Positives = 374/680 (55%), Gaps = 39/680 (5%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A  +F K+P   +  WN M+ GY+R    ++  +++  M + DV     ++  +L G+ R
Sbjct: 83  ARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDV----VSWNAMLSGYVR 138

Query: 128 DIAVE-----FGKELHCHVLKFGFDSSVFVQNA----------------LISTYCLCGE- 165
              V+     F +  H + + +    + +V++                 LIS  CL G  
Sbjct: 139 SGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGY 198

Query: 166 -----VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
                +  AR +FD     D+++WN M SGY +     + R+LF E   + V     T  
Sbjct: 199 VKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVF----TWT 254

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            ++ A  +   LD  +R    + + + +      N +   YA    M    E+F  +   
Sbjct: 255 AMVYAYVQDGMLDEARRVFDEMPQKREMS----YNVMIAGYAQYKRMDMGRELFEEMPFP 310

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           ++ SW  +++GY   G +  AR  FD MP+RD V W A+I GY +   + EA+ +  EM+
Sbjct: 311 NIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMK 370

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
                 +  T    L+ACA++ ALELG+ V   + +   +    VGNAL+ MYCKCG ++
Sbjct: 371 RDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCID 430

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
           +A  VF+ +  KD  +W  M+ G A +G G ++L +F  M+ A + PDE+T VGVLSAC+
Sbjct: 431 EAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACS 490

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           HTG+ D G EYF  M   +GI PN  HY CM+DLLGRAG L EA  +I+NMP +P++  W
Sbjct: 491 HTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATW 550

Query: 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
           GALLGA R+H + E+ E AA+ + +++P N  +YVLL N+YAA  RW +  ++R  +   
Sbjct: 551 GALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQI 610

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
           G++KTPG S +E+   +H F  GD  HP+   IY  L+E+   +K  GY+     V  DV
Sbjct: 611 GVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDV 670

Query: 641 GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIV 700
            EE+K+  +  HSEKLA+AFG+++   G  IR++KNLR+C DCH   K +S +  R +IV
Sbjct: 671 EEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIV 730

Query: 701 RDKTRFHHFKHGSCSCKDYW 720
           RD  R+HHF  G CSC+DYW
Sbjct: 731 RDSHRYHHFSEGICSCRDYW 750



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 183/390 (46%), Gaps = 52/390 (13%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           ++ GD+  A ++F + P   V  W  M+  Y +         ++ +M +        ++ 
Sbjct: 230 AQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQK----REMSYN 285

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ----NALISTYCLCGEVDMARGIFDV 175
            ++ G+ +   ++ G+EL        F+   F      N +IS YC  G++  AR +FD+
Sbjct: 286 VMIAGYAQYKRMDMGREL--------FEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDM 337

Query: 176 SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
             + D V+W A+ +GY +   ++E   +  EM+R G      T    LSACA +  L++G
Sbjct: 338 MPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELG 397

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           K+ H  V         ++ NAL  MY  CG +  A ++F  +++KD++SW  ++ GY   
Sbjct: 398 KQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGY--- 454

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
                AR  F                        R+ALT+F  M T+ ++PDE T+V +L
Sbjct: 455 -----ARHGFG-----------------------RQALTVFESMITAGVKPDEITMVGVL 486

Query: 356 TACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKD 413
           +AC++ G  + G E+  +      +  +      +ID+  + G +E+AQ + R M    D
Sbjct: 487 SACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPD 546

Query: 414 KFTWTAMIVGLAINGH---GDKSLDMFSQM 440
             TW A++    I+G+   G+++ +M  +M
Sbjct: 547 AATWGALLGASRIHGNMELGEQAAEMVFKM 576



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 197/453 (43%), Gaps = 48/453 (10%)

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKEL---HCHVLKFGFDS----SVFVQNALISTYCLCG 164
           RP NY  P      T          +   HC +    FD+    +    NA+IS Y    
Sbjct: 19  RPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNA 78

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP---------- 214
           +  +AR +FD     D+ +WN M +GY R ++  + R LF  M  K V+           
Sbjct: 79  KFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVR 138

Query: 215 -----------------TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
                             S++   +L+A  +   L+  +R    + E K    LI  N L
Sbjct: 139 SGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARR----LFESKSDWELISCNCL 194

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
              Y     +G A ++F  I  +D+ISW  +++GY   G +  AR+ F++ P RD   WT
Sbjct: 195 MGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWT 254

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           AM+  Y++     EA  +F EM        E +   ++   A    +++G   +   ++ 
Sbjct: 255 AMVYAYVQDGMLDEARRVFDEMPQKR----EMSYNVMIAGYAQYKRMDMG---RELFEEM 307

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
              N I   N +I  YC+ GD+ +A+ +F  M ++D  +W A+I G A NG  +++++M 
Sbjct: 308 PFPN-IGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNML 366

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
            +M R     +  T+   LSAC     ++ G++    + ++ G E        +V +  +
Sbjct: 367 VEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQV-VRTGYEKGCLVGNALVGMYCK 425

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            G ++EA +V + +  K + + W  +L     H
Sbjct: 426 CGCIDEAYDVFQGVQHK-DIVSWNTMLAGYARH 457



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 153/343 (44%), Gaps = 45/343 (13%)

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           N +  NA+   Y    +   A ++F  + +KD+ SW  ++TGY    ++  AR  FD MP
Sbjct: 63  NSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMP 122

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-- 367
           E+D V W AM+ GY+R     EA  +F  M   N      +   +L A    G LE    
Sbjct: 123 EKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKN----SISWNGLLAAYVRSGRLEEARR 178

Query: 368 ------EW--------VKTYIDKNKVKN-----------DIFVGNALIDMYCKCGDVEKA 402
                 +W        +  Y+ +N + +           D+   N +I  Y + GD+ +A
Sbjct: 179 LFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQA 238

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           +R+F E   +D FTWTAM+     +G  D++  +F +M +      E++Y  +++     
Sbjct: 239 RRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKR----EMSYNVMIAGYAQY 294

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
             +D GRE F +M       PN   +  M+    + G L +A  +   MP + +S+ W A
Sbjct: 295 KRMDMGRELFEEMPF-----PNIGSWNIMISGYCQNGDLAQARNLFDMMPQR-DSVSWAA 348

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAV-YVLLCNIYAAC 564
           ++     +    + E A   ++E+  D E++     C   +AC
Sbjct: 349 IIAG---YAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSAC 388



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 3/254 (1%)

Query: 52  NKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV 111
           N +++  C + GD+  A  +F  +P+     W  +I GY++   ++  + + ++M +   
Sbjct: 316 NIMISGYC-QNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGE 374

Query: 112 RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
             +  TF   L       A+E GK++H  V++ G++    V NAL+  YC CG +D A  
Sbjct: 375 SLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYD 434

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           +F      D+V+WN M +GY R     +   +F  M   GV P  +T+V VLSAC+    
Sbjct: 435 VFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGL 494

Query: 232 LDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIV 289
            D G    H   K+  I PN      + D+    G +  A  +  N+    D  +W A++
Sbjct: 495 TDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALL 554

Query: 290 TGYINRGQVDMARQ 303
                 G +++  Q
Sbjct: 555 GASRIHGNMELGEQ 568



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 5/194 (2%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQ+H Q ++ G      V N LV   C + G +  A  VF+ +    +  WNTM+ GY+R
Sbjct: 398 KQVHGQVVRTGYEKGCLVGNALVGMYC-KCGCIDEAYDVFQGVQHKDIVSWNTMLAGYAR 456

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE-LHCHVLKFGFDSSVF 151
               +  + ++  M+ + V+PD  T   +L   +     + G E  H     +G   +  
Sbjct: 457 HGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSK 516

Query: 152 VQNALISTYCLCGEVDMARG-IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
               +I      G ++ A+  I ++ ++ D  TW A+  G  R+    E  +   EM  K
Sbjct: 517 HYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALL-GASRIHGNMELGEQAAEMVFK 575

Query: 211 GVLPTSVTIVLVLS 224
            + P +  + ++LS
Sbjct: 576 -MEPHNSGMYVLLS 588


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/657 (37%), Positives = 368/657 (56%), Gaps = 24/657 (3%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS--DVRPDNYTFPF--LLK 123
           A ++F  +P   V  WN+++ GY+     +NG   Y+D  +   D  P+  +  +  LL 
Sbjct: 130 ARRLFDLMPEKDVVSWNSLLSGYA-----QNG---YVDEAREVFDNMPEKNSISWNGLLA 181

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
            +  +  +E      C + +   D  +   N L+  +    ++  AR +FD     D ++
Sbjct: 182 AYVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAIS 237

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           WN M SGY +     + R+LF E   + V     T   ++S   +   LD  K     + 
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDESPTRDVF----TWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           E     N +  NA+   Y    +M  A E+F ++  +++ SW  ++TGY   G +  AR+
Sbjct: 294 E----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARK 349

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           +FD MP+RD V W A+I GY +   + EAL +F E++      +  T    L+ CA++ A
Sbjct: 350 FFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAA 409

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           LELG+ +     K       FVGNAL+ MY KCG +++A   F  +  KD  +W  M+ G
Sbjct: 410 LELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAG 469

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            A +G G ++L +F  M  A + PDE+T VGVLSAC+HTG++D G EYF  MT  +G+ P
Sbjct: 470 YARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIP 529

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              HY CM+DLLGRAG L EA ++I+NMP +P +  WGALLGA R+H + E+ E AA+ +
Sbjct: 530 TSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMV 589

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
            +++P N  +YVLL N+YAA  RW +  ++R  + D G++K PG S +E+   +H F  G
Sbjct: 590 FKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVG 649

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           D SHP+ + IY  L+E+   ++  GY+     V  DV EE+KE  +  HSEKLA+AFG++
Sbjct: 650 DCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGIL 709

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +   G  IR++KNLR+C DCH   K +S +  R +I+RD  RFHHF  G CSC DYW
Sbjct: 710 TIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 181/391 (46%), Gaps = 54/391 (13%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN-YTF 118
           ++ G +  A ++F + P   V  W  M+ GY      +NG+L        ++   N  ++
Sbjct: 246 AQGGGLSQARRLFDESPTRDVFTWTAMVSGYV-----QNGMLDEAKTFFDEMPEKNEVSY 300

Query: 119 PFLLKGFTR----DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174
             ++ G+ +    DIA E  + + C         ++   N +I+ Y   G++  AR  FD
Sbjct: 301 NAMIAGYVQTKKMDIARELFESMPCR--------NISSWNTMITGYGQIGDIAQARKFFD 352

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
           +  + D V+W A+ +GY +   ++E   +F E+++ G      T    LS CA +  L++
Sbjct: 353 MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALEL 412

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           GK+ H    +        + NAL  MY  CG +  A + F  I+ KDV+SW  ++ GY  
Sbjct: 413 GKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGY-- 470

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
                 AR  F                        R+ALT+F  M+T+ ++PDE T+V +
Sbjct: 471 ------ARHGFG-----------------------RQALTVFESMKTAGVKPDEITMVGV 501

Query: 355 LTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRK 412
           L+AC++ G L+ G E+  +      V         +ID+  + G +E+AQ + R M  + 
Sbjct: 502 LSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQP 561

Query: 413 DKFTWTAMIVGLAINGH---GDKSLDMFSQM 440
              +W A++    I+G+   G+K+ +M  +M
Sbjct: 562 GAASWGALLGASRIHGNTELGEKAAEMVFKM 592



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 3/259 (1%)

Query: 47  NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM 106
           N +  N ++T    + GD+  A K F  +P+     W  +I GY++   ++  + +++++
Sbjct: 327 NISSWNTMIT-GYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385

Query: 107 LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166
            +     +  TF   L       A+E GK++H   +K G+ +  FV NAL++ Y  CG +
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSI 445

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
           D A   F+   + DVV+WN M +GY R     +   +F  M+  GV P  +T+V VLSAC
Sbjct: 446 DEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSAC 505

Query: 227 AKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVIS 284
           +    LD G    +   K+  ++P       + D+    G +  A ++  N+       S
Sbjct: 506 SHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAAS 565

Query: 285 WTAIVTGYINRGQVDMARQ 303
           W A++      G  ++  +
Sbjct: 566 WGALLGASRIHGNTELGEK 584



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 153/359 (42%), Gaps = 67/359 (18%)

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
           P+++  N     +   G    AL +F  +  +  +S+ A+++GY+   + ++AR  FDQM
Sbjct: 47  PDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM 106

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI------------------------ 344
           PERD   W  M+ GY+R  R  +A  LF  M   ++                        
Sbjct: 107 PERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFD 166

Query: 345 -RPDEFTIV--SILTACANLGALE-------------LGEW---VKTYIDKNKVKN---- 381
             P++ +I    +L A  + G +E             L  W   +  ++ K K+ +    
Sbjct: 167 NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 382 -------DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
                  D    N +I  Y + G + +A+R+F E   +D FTWTAM+ G   NG  D++ 
Sbjct: 227 FDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAK 286

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
             F +M       +EV+Y  +++    T  +D  RE F  M  +     N + +  M+  
Sbjct: 287 TFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITG 337

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
            G+ G + +A +    MP + + + W A++     +  +   E A    +E+  D E++
Sbjct: 338 YGQIGDIAQARKFFDMMPQR-DCVSWAAIIAG---YAQSGHYEEALNMFVEIKQDGESL 392



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 57/261 (21%)

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           +TG++D G EYF  M  ++ + P   HY CM+DLLGR   L E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
           GALLGA R+H + E+ E AA+   ++ P N  +                       + D 
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------SKMRDV 857

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
           G++K PG S  E+   +H F  G         ++L     + + + +G++ ++ ++ +  
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVG---------LFL-----SRERENIGFLEEL-DLKMRE 902

Query: 641 GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN-LRMCVDCHRMAKLVSMVYDREVI 699
            EE+KER +   SE LA A G+++   G   R++K  + +C DC    K +S +  R + 
Sbjct: 903 REEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           +RD    H F    CSC +YW
Sbjct: 963 LRDS---HRFNESICSCGEYW 980



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 55/253 (21%)

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           +K+ D++ W   ++ ++  G  D A   F+ MP R  V + AMI GYLR ++F  A  LF
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY--- 393
            +M                                        + D+F  N ++  Y   
Sbjct: 104 DQMP---------------------------------------ERDLFSWNVMLTGYVRN 124

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
           C+ GD   A+R+F  M  KD  +W +++ G A NG+ D++ ++F  M       + +++ 
Sbjct: 125 CRLGD---ARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE----KNSISWN 177

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
           G+L+A  H G ++E     A +  +   + +   + C++    R   L +A  +   MP+
Sbjct: 178 GLLAAYVHNGRIEE-----ACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPV 232

Query: 514 KPNSIVWGALLGA 526
           + ++I W  ++  
Sbjct: 233 R-DAISWNTMISG 244



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 12/209 (5%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVT--FCCSEKGDMKYACKVFRKIPR 77
           + TC  +  L   KQIH Q +K+G  T   V N L+   F C   G +  A   F  I  
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKC---GSIDEANDTFEGIEE 457

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
             V  WNTM+ GY+R    +  + ++  M  + V+PD  T   +L   +    ++ G E 
Sbjct: 458 KDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEY 517

Query: 138 HCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVK 195
              + K +G   +      +I      G ++ A+ +  ++ ++    +W A+  G  R+ 
Sbjct: 518 FYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALL-GASRIH 576

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLS 224
              E  +   EM  K + P +  + ++LS
Sbjct: 577 GNTELGEKAAEMVFK-MEPQNSGMYVLLS 604


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/711 (35%), Positives = 389/711 (54%), Gaps = 32/711 (4%)

Query: 36  HSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV---CLWNTMIKGYSR 92
           H+   + G  +N  V N +V+    + G +++A  +F  +    +     WN+++  Y  
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMY-GKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMW 340

Query: 93  IDSHKNGVLIYLDMLKSDV-RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
                  + ++  M    +  PD  +   +L       A   G+++H   ++ G    VF
Sbjct: 341 ASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVF 400

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V NA++  Y  CG+++ A  +F      DVV+WNAM +GY +  + +    LF  M  + 
Sbjct: 401 VGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEEN 460

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG--- 268
           +    VT   V++  A+           R + +C   PN++    L  + +AC  +G   
Sbjct: 461 IELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVV---TLVSLLSACVSVGALL 517

Query: 269 -------FALEIFGNIKNKD-------VISWTAIVTGYINRGQVDMARQYFDQMP--ERD 312
                  +A++   N+   D       VI+   ++  Y      ++AR+ FD +   +RD
Sbjct: 518 HGKETHCYAIKFILNLDGPDPGADDLKVIN--GLIDMYAKCQSTEVARKMFDSVSPKDRD 575

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREM--QTSNIRPDEFTIVSILTACANLGALELGEWV 370
            V WT MI GY +      AL LF  M     +I+P++FT+   L ACA L AL  G  V
Sbjct: 576 VVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQV 635

Query: 371 KTYIDKNKVKND-IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
             Y+ +N   +  +FV N LIDMY K GDV+ AQ VF  M +++  +WT+++ G  ++G 
Sbjct: 636 HAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGR 695

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
           G+ +L +F +M +  ++PD +T++ VL AC+H+GMVD G  +F  M+   G++P   HY 
Sbjct: 696 GEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYA 755

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           CMVDL GRAG L EA+++I  MPM+P  +VW ALL ACR+H + E+ E AA ++LEL+  
Sbjct: 756 CMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESG 815

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           N+  Y LL NIYA   RW +   +R  +   GIKK PGCS I+    V  F  GD+SHPQ
Sbjct: 816 NDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQ 875

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
           +++IY  L ++   +K +GY+P  S    DV +E+K   +++HSEKLA+A+G+++  P  
Sbjct: 876 SQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLHPRA 935

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            IRI KNLR+C DCH     +S + + E+I+RD +RFHHFK+GSCSCK YW
Sbjct: 936 PIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 191/609 (31%), Positives = 307/609 (50%), Gaps = 32/609 (5%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
            S  +    L+  T  I+ ++ C S+   K +H Q+I  GLL +    N + T+  S   
Sbjct: 149 QSQFTNTRLLSCATIPITALKECNSLAHAKLLHQQSIMQGLLFH-LATNLIGTYIASNS- 206

Query: 64  DMKYACKVFRKIPRP--SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
              YA  +  ++P    SV  WN +I+    + S ++   +Y  M      PD+YTFPF+
Sbjct: 207 -TAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFV 265

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYK-- 178
            K      ++  G  LH  V + GF S+VFV NA++S Y  CG +  A  +F D+ ++  
Sbjct: 266 FKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGI 325

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKR 237
            D+V+WN++ S Y      +    LF +M  + ++ P  +++V +L ACA L     G++
Sbjct: 326 QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQ 385

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H +     +V ++ + NA+ DMYA CG+M  A ++F  +K KDV+SW A+VTGY   G+
Sbjct: 386 VHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGR 445

Query: 298 VDMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
           ++ A   F++M E     D V WTA+I GY +  +  EAL +FR+M     RP+  T+VS
Sbjct: 446 LEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVS 505

Query: 354 ILTACANLGALELGEWVKTYIDK--------NKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           +L+AC ++GAL  G+    Y  K        +   +D+ V N LIDMY KC   E A+++
Sbjct: 506 LLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKM 565

Query: 406 FREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLR--ASIIPDEVTYVGVLSACTH 461
           F  +  KD+   TWT MI G A +G  + +L +FS M +   SI P++ T    L AC  
Sbjct: 566 FDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACAR 625

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
              +  GR+  A +              C++D+  ++G ++ A  V  NMP + N++ W 
Sbjct: 626 LAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQR-NAVSWT 684

Query: 522 ALLGACRVHRDAEMAEMAAKQI--LELDPDNEAVYVLL--CNIYAACNRWDNFRELRQMI 577
           +L+    +H   E A     ++  + L PD     V+L  C+     +   NF    +M 
Sbjct: 685 SLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINF--FNRMS 742

Query: 578 LDRGIKKTP 586
            D G+   P
Sbjct: 743 KDFGVDPGP 751


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/657 (37%), Positives = 368/657 (56%), Gaps = 24/657 (3%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS--DVRPDNYTFPF--LLK 123
           A ++F  +P   V  WN+++ GY+     +NG   Y+D  +   D  P+  +  +  LL 
Sbjct: 130 ARRLFDLMPEKDVVSWNSLLSGYA-----QNG---YVDEAREVFDNMPEKNSISWNGLLA 181

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
            +  +  +E      C + +   D  +   N L+  +    ++  AR +FD     D ++
Sbjct: 182 AYVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAIS 237

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           WN M SGY +     + R+LF E   + V     T   ++S   +   LD  K     + 
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDESPTRDVF----TWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           E     N +  NA+   Y    +M  A E+F ++  +++ SW  ++TGY   G +  AR+
Sbjct: 294 E----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARK 349

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           +FD MP+RD V W A+I GY +   + EAL +F E++      +  T    L+ CA++ A
Sbjct: 350 FFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAA 409

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           LELG+ +     K       FVGNAL+ MY KCG +++A   F  +  KD  +W  M+ G
Sbjct: 410 LELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAG 469

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            A +G G ++L +F  M  A + PDE+T VGVLSAC+HTG++D G EYF  MT  +G+ P
Sbjct: 470 YARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIP 529

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              HY CM+DLLGRAG L EA ++I+NMP +P +  WGALLGA R+H + E+ E AA+ +
Sbjct: 530 TSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMV 589

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
            +++P N  +YVLL N+YAA  RW +  ++R  + D G++K PG S +E+   +H F  G
Sbjct: 590 FKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVG 649

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           D SHP+ + IY  L+E+   ++  GY+     V  DV EE+KE  +  HSEKLA+AFG++
Sbjct: 650 DCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGIL 709

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +   G  IR++KNLR+C DCH   K +S +  R +I+RD  RFHHF  G CSC DYW
Sbjct: 710 TIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 181/391 (46%), Gaps = 54/391 (13%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN-YTF 118
           ++ G +  A ++F + P   V  W  M+ GY      +NG+L        ++   N  ++
Sbjct: 246 AQGGGLSQARRLFDESPTRDVFTWTAMVSGYV-----QNGMLDEAKTFFDEMPEKNEVSY 300

Query: 119 PFLLKGFTR----DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174
             ++ G+ +    DIA E  + + C         ++   N +I+ Y   G++  AR  FD
Sbjct: 301 NAMIAGYVQTKKMDIARELFESMPCR--------NISSWNTMITGYGQIGDIAQARKFFD 352

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
           +  + D V+W A+ +GY +   ++E   +F E+++ G      T    LS CA +  L++
Sbjct: 353 MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALEL 412

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           GK+ H    +        + NAL  MY  CG +  A + F  I+ KDV+SW  ++ GY  
Sbjct: 413 GKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGY-- 470

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
                 AR  F                        R+ALT+F  M+T+ ++PDE T+V +
Sbjct: 471 ------ARHGFG-----------------------RQALTVFESMKTAGVKPDEITMVGV 501

Query: 355 LTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRK 412
           L+AC++ G L+ G E+  +      V         +ID+  + G +E+AQ + R M  + 
Sbjct: 502 LSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQP 561

Query: 413 DKFTWTAMIVGLAINGH---GDKSLDMFSQM 440
              +W A++    I+G+   G+K+ +M  +M
Sbjct: 562 GAASWGALLGASRIHGNTELGEKAAEMVFKM 592



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 3/259 (1%)

Query: 47  NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM 106
           N +  N ++T    + GD+  A K F  +P+     W  +I GY++   ++  + +++++
Sbjct: 327 NISSWNTMIT-GYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385

Query: 107 LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166
            +     +  TF   L       A+E GK++H   +K G+ +  FV NAL++ Y  CG +
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSI 445

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
           D A   F+   + DVV+WN M +GY R     +   +F  M+  GV P  +T+V VLSAC
Sbjct: 446 DEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSAC 505

Query: 227 AKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVIS 284
           +    LD G    +   K+  ++P       + D+    G +  A ++  N+       S
Sbjct: 506 SHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAAS 565

Query: 285 WTAIVTGYINRGQVDMARQ 303
           W A++      G  ++  +
Sbjct: 566 WGALLGASRIHGNTELGEK 584



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 153/359 (42%), Gaps = 67/359 (18%)

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
           P+++  N     +   G    AL +F  +  +  +S+ A+++GY+   + ++AR  FDQM
Sbjct: 47  PDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM 106

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI------------------------ 344
           PERD   W  M+ GY+R  R  +A  LF  M   ++                        
Sbjct: 107 PERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFD 166

Query: 345 -RPDEFTIV--SILTACANLGALE-------------LGEW---VKTYIDKNKVKN---- 381
             P++ +I    +L A  + G +E             L  W   +  ++ K K+ +    
Sbjct: 167 NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 382 -------DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
                  D    N +I  Y + G + +A+R+F E   +D FTWTAM+ G   NG  D++ 
Sbjct: 227 FDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAK 286

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
             F +M       +EV+Y  +++    T  +D  RE F  M  +     N + +  M+  
Sbjct: 287 TFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITG 337

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
            G+ G + +A +    MP + + + W A++     +  +   E A    +E+  D E++
Sbjct: 338 YGQIGDIAQARKFFDMMPQR-DCVSWAAIIAG---YAQSGHYEEALNMFVEIKQDGESL 392



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 55/253 (21%)

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           +K+ D++ W   ++ ++  G  D A   F+ MP R  V + AMI GYLR ++F  A  LF
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY--- 393
            +M                                        + D+F  N ++  Y   
Sbjct: 104 DQMP---------------------------------------ERDLFSWNVMLTGYVRN 124

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
           C+ GD   A+R+F  M  KD  +W +++ G A NG+ D++ ++F  M       + +++ 
Sbjct: 125 CRLGD---ARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE----KNSISWN 177

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
           G+L+A  H G ++E     A +  +   + +   + C++    R   L +A  +   MP+
Sbjct: 178 GLLAAYVHNGRIEE-----ACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPV 232

Query: 514 KPNSIVWGALLGA 526
           + ++I W  ++  
Sbjct: 233 R-DAISWNTMISG 244



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 12/209 (5%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVT--FCCSEKGDMKYACKVFRKIPR 77
           + TC  +  L   KQIH Q +K+G  T   V N L+   F C   G +  A   F  I  
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKC---GSIDEANDTFEGIEE 457

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
             V  WNTM+ GY+R    +  + ++  M  + V+PD  T   +L   +    ++ G E 
Sbjct: 458 KDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEY 517

Query: 138 HCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARG-IFDVSYKDDVVTWNAMFSGYKRVK 195
              + K +G   +      +I      G ++ A+  I ++ ++    +W A+  G  R+ 
Sbjct: 518 FYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALL-GASRIH 576

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLS 224
              E  +   EM  K + P +  + ++LS
Sbjct: 577 GNTELGEKAAEMVFK-MEPQNSGMYVLLS 604


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/553 (41%), Positives = 338/553 (61%), Gaps = 32/553 (5%)

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           AR +F+   + D+V +N+M  GY R     E   LF E+   G+LP + T   +L ACA 
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
            K L+ G++ H    +  +  N+ +   L +MY  C +                      
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECED---------------------- 179

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
                    VD AR  FD++ E   V + AMI GY R NR  EAL+LFREMQ   ++P+E
Sbjct: 180 ---------VDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNE 230

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T++S+L++CA LG+L+LG+W+  Y  K+     + V  ALIDM+ KCG ++ A  +F +
Sbjct: 231 ITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEK 290

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M  KD   W+AMIV  A +G  +KS+ MF +M   ++ PDE+T++G+L+AC+HTG V+EG
Sbjct: 291 MRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEG 350

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           R+YF+ M  + GI P+  HYG MVDLL RAG+L +A E I  +P+ P  ++W  LL AC 
Sbjct: 351 RKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACS 410

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
            H + ++AE  +++I ELD  +   YV+L N+YA   +W+    LR+++ DR   K PGC
Sbjct: 411 SHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGC 470

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF-LDVGEEDKER 647
           S IE+N VVHEF +GD     T +++  LDEM  +LK  GY+PD S V   ++ +++KE 
Sbjct: 471 SSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEI 530

Query: 648 AVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFH 707
            +  HSEKLA+ FGL+++ PG TIR+VKNLR+C DCH  AKL+S+++ R+V++RD  RFH
Sbjct: 531 TLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFH 590

Query: 708 HFKHGSCSCKDYW 720
           HF+ G CSC D+W
Sbjct: 591 HFEDGKCSCGDFW 603



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 209/394 (53%), Gaps = 36/394 (9%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE--KGDMKYAC 69
           T+  + P++  I  C S+ +L QI +  IK   + + +   KL+ FC     +  M YA 
Sbjct: 26  TVNTQNPILL-ISKCNSLRELMQIQAYAIK-SHIEDVSFVAKLINFCTESPTESSMSYAR 83

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
            +F  +  P + ++N+M +GYSR  +      +++++L+  + PDNYTFP LLK      
Sbjct: 84  HLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAK 143

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A+E G++LHC  +K G D +V+V   LI+ Y  C +VD AR +FD   +  VV +NAM +
Sbjct: 144 ALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMIT 203

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY R  + +E   LF EM+ K + P  +T++ VLS+CA L  LD+GK  H+Y K+     
Sbjct: 204 GYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
            + +  AL DM+A CG +  A+ IF  ++ KD  +W+A++  Y N G+ +          
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAE---------- 313

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-E 368
                                +++ +F  M++ N++PDE T + +L AC++ G +E G +
Sbjct: 314 ---------------------KSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRK 352

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
           +    + K  +   I    +++D+  + G++E A
Sbjct: 353 YFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDA 386


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/659 (38%), Positives = 368/659 (55%), Gaps = 38/659 (5%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A ++F +IP P +  +NT+I  Y+        + ++  M +  +  D +T   ++     
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCD 152

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNA 186
           D+ +    +LH   +  GFDS V V NAL++ Y   G++D A+ +F  +    D V+WN+
Sbjct: 153 DVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M   Y + ++  +   LF EM R+G+     T+  VL+A   L+DL  G + H  + +  
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              N  + + L D+Y+ CG                              G +   R+ F+
Sbjct: 271 FHQNSHVGSGLIDLYSKCG------------------------------GGMSDCRKVFE 300

Query: 307 QMPERDYVLWTAMIDGYLRVNRFRE-ALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
           ++ E D VLW  M+ GY +   F E AL  FR+MQ    RP++ + V +++AC+NL +  
Sbjct: 301 EITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPS 360

Query: 366 LGEWVKTYIDKNKV-KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
            G+ + +   K+ +  N I V NALI MY KCG+++ A+R+F  M   +  +  +MI G 
Sbjct: 361 QGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGY 420

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A +G   +SL +F  ML   I P  +T++ VLSAC HTG V+EG  YF  M  +  IEP 
Sbjct: 421 AQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPE 480

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HY CM+DLLGRAG L+EA  +I  MP  P SI W +LLGACR H + E+A  AA Q+L
Sbjct: 481 AEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVL 540

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           +L+P N A YV+L N+YA+  RW+    +R+ + DRG+KK PGCS IE+   +H FVA D
Sbjct: 541 QLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAED 600

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL-DVGEEDKERAVY--QHSEKLAMAFG 661
            SHP  KEIY  L+EM+  +K  GY+PD+    + D G    E+ +    HSEKLA+AFG
Sbjct: 601 SSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFG 660

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LIS+  G  + +VKNLR+C DCH   K +S +  RE+ VRD  RFH FK G CSC DYW
Sbjct: 661 LISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 153/305 (50%), Gaps = 6/305 (1%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L  C   +DL  GK  H    +  I P+    N    +Y+ CG + +A + F +I + +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V S+ AI+  Y    +  +A Q FDQ+PE D V +  +I  Y        AL LF  M+ 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             +  D FT+ +++TAC +   L +G+ + +    +   + + V NAL+  Y K GD++ 
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGL-IGQ-LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDD 191

Query: 402 AQRVFREMLR-KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
           A+RVF  M   +D+ +W +MIV    +  G K+L +F +M+R  +  D  T   VL+A T
Sbjct: 192 AKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFT 251

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR-AGHLNEALEVIKNMPMKPNSIV 519
               +  G ++   + I+ G   N      ++DL  +  G +++  +V + +  +P+ ++
Sbjct: 252 CLEDLSGGLQFHGQL-IKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEI-TEPDLVL 309

Query: 520 WGALL 524
           W  ++
Sbjct: 310 WNTMV 314



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 178/403 (44%), Gaps = 17/403 (4%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           F  LLK    +  +  GK LH   +K     S +  N  I  Y  CG +  AR  F    
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
             +V ++NA+ + Y +  +     +LF ++      P  V+   ++SA A   +      
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPE----PDLVSYNTLISAYADCGETAPALG 126

Query: 238 AHRYVKECKI-VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW----TAIVTGY 292
               ++E  + +    L   +T   A C ++G   ++     +    S+     A++T Y
Sbjct: 127 LFSGMREMGLDMDGFTLSAVIT---ACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYY 183

Query: 293 INRGQVDMARQYFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
              G +D A++ F  M   RD V W +MI  Y +     +AL LF+EM    +  D FT+
Sbjct: 184 GKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTL 243

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC-GDVEKAQRVFREML 410
            S+LTA   L  L  G      + K     +  VG+ LID+Y KC G +   ++VF E+ 
Sbjct: 244 ASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEIT 303

Query: 411 RKDKFTWTAMIVGLAINGHG-DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
             D   W  M+ G + N    + +L+ F QM      P++ ++V V+SAC++     +G+
Sbjct: 304 EPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGK 363

Query: 470 EYFADMTIQHGIEPNEAHY-GCMVDLLGRAGHLNEALEVIKNM 511
           +  + + ++  I  N       ++ +  + G+L +A  +   M
Sbjct: 364 QIHS-LALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405



 Score = 42.7 bits (99), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 42/251 (16%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNP-TVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           +IS      S  Q KQIHS  +K  + +N  +V N L+    S+ G+++ A ++F ++  
Sbjct: 349 VISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAM-YSKCGNLQDARRLFDRMAE 407

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            +    N+MI GY++       + ++  ML+  + P + TF  +L        VE G   
Sbjct: 408 HNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNY 467

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
                                        +M +  F++  + +   ++ M     R  + 
Sbjct: 468 ----------------------------FNMMKEKFNI--EPEAEHYSCMIDLLGRAGKL 497

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV---KECKIVPNLILE 254
            E   L   M      P S+    +L AC    ++++  +A   V   +     P ++L 
Sbjct: 498 SEAENLIARMPFN---PGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLS 554

Query: 255 NALTDMYAACG 265
           N    MYA+ G
Sbjct: 555 N----MYASAG 561


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/666 (35%), Positives = 374/666 (56%), Gaps = 41/666 (6%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           ++ GD+    +VF  +   +V +W  +I  Y++       V ++LDML++  +PD YT  
Sbjct: 200 AKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLS 259

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC---GEVDMARGIFDVS 176
            +L   T   +   G++LH   L+ G +S   V   L+  Y        +  AR +F+  
Sbjct: 260 SMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRM 319

Query: 177 YKDDVVTWNAMFSGY-KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
            K +V+ W A+ SGY +R  Q ++   LF +M  +G+ P  +T   +L ACA L D D G
Sbjct: 320 PKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSG 379

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           ++ H +  +  +    ++ NAL  MYA                                 
Sbjct: 380 RQIHTHCVKSNLADLNVVGNALVSMYA-------------------------------ES 408

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G ++ AR  FDQ+ E++ V ++  +DG  R N +++      +++   +    FT  S++
Sbjct: 409 GSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQD-----YQIERMELGISTFTFGSLI 463

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
           +A A++G L  G+ +     K    +D  +GN+L+ MY +CG +  A +VF EM   +  
Sbjct: 464 SAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVI 523

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           +WT+MI GLA +G+  ++L++F  M+ A + P++VTY+ VLSAC+H G+V EG+E+F  M
Sbjct: 524 SWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMM 583

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535
              HG+ P   HY CMVDLLGR+G + +AL+ I  MP + +++VW  LLGAC+ H + ++
Sbjct: 584 QKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDI 643

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
            E+AA  +++L+P + A YVLL N+YA    WD    +R ++ D+ + K  G S + ++ 
Sbjct: 644 GEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDN 703

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
            +HEF AGD SHPQ +EIY KL+ +  ++K +GY+PD S V  D+ +E KE  + QHSEK
Sbjct: 704 TIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEK 763

Query: 656 LAMAFGLISSGPGVT-IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           +A+AFGLIS       IRI KNLR+CVDCH   K VS    RE+I+RD  RFH  K G C
Sbjct: 764 IAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGEC 823

Query: 715 SCKDYW 720
           SC +YW
Sbjct: 824 SCGEYW 829



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 134/557 (24%), Positives = 244/557 (43%), Gaps = 51/557 (9%)

Query: 29  MHQLKQIHSQTIKLGLL--TNPTVQNKLVTFCCSEKGDMKYACKVFRKIP--RPSVCLWN 84
           +H  + +    ++ G L  T+  V N L+T   S+   +  A  VF  +P     +  W 
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLY-SKCSAVAAARSVFDGMPVGLRDLVSWT 121

Query: 85  TMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG-FTRDIAVEFGKELHCHVLK 143
            M    SR  +    + ++ + L+  + P+ +T     +  F  ++    G  +   V K
Sbjct: 122 AMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFK 181

Query: 144 FGF-DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
            GF  + V V  ALI  +   G++   R +FD  ++  VV W  + + Y +    DE  +
Sbjct: 182 LGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVE 241

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           LF +M   G  P   T+  +LSAC +L    +G++ H       +  +  +   L DMYA
Sbjct: 242 LFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYA 301

Query: 263 AC---GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
                  +  A E+F  +   +V++WTA+++GY+ RG  D                    
Sbjct: 302 KSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQD-------------------- 341

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
                      + + LF +M    IRP+  T  S+L ACANLG  + G  + T+  K+ +
Sbjct: 342 ----------NQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNL 391

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
            +   VGNAL+ MY + G +E+A+  F ++  K+  +++       ++G G  +     Q
Sbjct: 392 ADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSG-----NLDGDGRSNTYQDYQ 446

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           + R  +     T+  ++SA    GM+ +G+   A ++++ G   + A    +V +  R G
Sbjct: 447 IERMELGISTFTFGSLISAAASVGMLTKGQRLHA-LSLKAGFGSDRAIGNSLVSMYSRCG 505

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLLC 558
           +L +A +V   M    N I W +++     H  A  A E+    I      N+  Y+   
Sbjct: 506 YLVDACQVFDEMN-DHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYI--- 561

Query: 559 NIYAACNRWDNFRELRQ 575
            + +AC+     +E ++
Sbjct: 562 AVLSACSHAGLVKEGKE 578


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/528 (42%), Positives = 333/528 (63%), Gaps = 33/528 (6%)

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRA 238
           +V  WN +  GY  +        L+ EM   G++ P + T   ++ A   + D+ +G+  
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H  V        + ++N+L  +YA CG++  A ++                         
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKV------------------------- 178

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                 FD+MPE+D V W ++I+G+    +  EAL L+ EM +  I+PD FTIVS+L+AC
Sbjct: 179 ------FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A +GAL LG+ V  Y+ K  +  ++   N L+D+Y +CG VE+A+ +F EM+ K+  +WT
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRA-SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           ++IVGLA+NG G +++++F  M     ++P E+T+VG+L AC+H GMV EG EYF  M  
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
           ++ IEP   H+GCMVDLL RAG + +A E IK+MPM+PN ++W  LLGAC VH D+++AE
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE 412

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
            A  QIL+L+P++   YVLL N+YA+  RW + +++R+ +L  G+KK PG S++E+   V
Sbjct: 413 FARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRV 472

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLA 657
           HEF+ GDKSHPQ+  IY KL EMT  L+  GY+P IS V++DV EE+KE AV  HSEK+A
Sbjct: 473 HEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIA 532

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           +AF LIS+     I +VKNLR+C DCH   KLVS VY+RE++VRD++R
Sbjct: 533 IAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 229/430 (53%), Gaps = 43/430 (10%)

Query: 28  SMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCCS--EKGDMKYACKVFRKIPRP-SVCLW 83
           S+ +L+QIH+ +I+ G+ +++  +   L+ +  S      M YA KVF KI +P +V +W
Sbjct: 29  SITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIW 88

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           NT+I+GY+ I +  +   +Y +M  S  V PD +T+PFL+K  T    V  G+ +H  V+
Sbjct: 89  NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           + GF S ++VQN+L+  Y  CG+V  A  +FD   + D+V WN++ +G+    + +E   
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           L+ EM  KG+ P   TIV +LSACAK+  L +GKR H Y+ +  +  NL   N L D+YA
Sbjct: 209 LYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG +  A  +F  + +K+ +SWT+++ G                               
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVG------------------------------- 297

Query: 323 YLRVNRF-REALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKV 379
            L VN F +EA+ LF+ M+ T  + P E T V IL AC++ G ++ G E+ +   ++ K+
Sbjct: 298 -LAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKI 356

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +  I     ++D+  + G V+KA    + M ++ +   W  ++    +  HGD  L  F+
Sbjct: 357 EPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTV--HGDSDLAEFA 414

Query: 439 QMLRASIIPD 448
           ++    + P+
Sbjct: 415 RIQILQLEPN 424



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 152/330 (46%), Gaps = 13/330 (3%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           LI  + T   +   + IHS  I+ G  +   VQN L+    +  GD+  A KVF K+P  
Sbjct: 127 LIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLY-ANCGDVASAYKVFDKMPEK 185

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            +  WN++I G++     +  + +Y +M    ++PD +T   LL    +  A+  GK +H
Sbjct: 186 DLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVH 245

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
            +++K G   ++   N L+  Y  CG V+ A+ +FD     + V+W ++  G        
Sbjct: 246 VYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGK 305

Query: 199 ETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENA 256
           E  +LF  ME  +G+LP  +T V +L AC+    +  G    R ++ E KI P +     
Sbjct: 306 EAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGC 365

Query: 257 LTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMAR----QYFDQMPER 311
           + D+ A  G++  A E   ++    +V+ W  ++      G  D+A     Q     P  
Sbjct: 366 MVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNH 425

Query: 312 --DYVLWTAMIDGYLRVNRFREALTLFREM 339
             DYVL + M   Y    R+ +   + ++M
Sbjct: 426 SGDYVLLSNM---YASEQRWSDVQKIRKQM 452


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/692 (35%), Positives = 378/692 (54%), Gaps = 36/692 (5%)

Query: 33   KQIHSQTIKLGLLTNP-TVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
             ++H+  I+ GLL     + N L+    ++ G +  AC VFR +       WN+MI G  
Sbjct: 408  SEVHAFLIRSGLLNAQIAIGNGLINMY-AKCGAINDACVVFRLMDNKDSVTWNSMITGLD 466

Query: 92   RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
            +       V  + +M ++++ P N+T    L        +  G++LHC  LK G D  V 
Sbjct: 467  QNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVS 526

Query: 152  VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK-QFDETRKLFGEMERK 210
            V NAL++ Y  CG V   +  F +    D V+WN++       +    E  + F  M R 
Sbjct: 527  VSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRA 586

Query: 211  GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
            G  P  VT + +L+A + L   ++GK+ H  V +  +  +  +ENAL   Y  CG+MG+ 
Sbjct: 587  GWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYC 646

Query: 271  LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
              IF  + ++                              +D V W +MI GY+      
Sbjct: 647  ENIFSRMSDR------------------------------QDEVSWNSMISGYIHNELLP 676

Query: 331  EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
            +A+ +   M     R D FT  ++L+ACA +  LE G  V     +  +++DI +G+AL+
Sbjct: 677  KAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALV 736

Query: 391  DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            DMY KCG ++ A R F  M  ++ ++W +MI G A +GHG KSLD+F+QM     +PD V
Sbjct: 737  DMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHV 796

Query: 451  TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
            T+VGVLSAC+H G+V+EG  +F  M+  +G+ P   H+ CMVDLLGR G LN+  + +  
Sbjct: 797  TFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQ 856

Query: 511  MPMKPNSIVWGALLGA-CRVH-RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
            MP+KPN ++W  +LGA CR + R+  +   AA+ +LE++P N   Y+LL N+YA+  +WD
Sbjct: 857  MPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWD 916

Query: 569  NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
            +  + R  +    +KK  GCS + M   VH FVAGDKSHP+   IY KL E+   ++  G
Sbjct: 917  DVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAG 976

Query: 629  YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
            Y+P+      D+  E KE  +  HSEK+A+AF +++    + IRI+KNLR+C DCH   K
Sbjct: 977  YIPETRFALYDLEGESKEELLSYHSEKIAVAF-VLTRPSKMPIRILKNLRVCGDCHSAFK 1035

Query: 689  LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             +S + +R++++RD  RFHHF++G CSC D+W
Sbjct: 1036 YISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 141/543 (25%), Positives = 256/543 (47%), Gaps = 48/543 (8%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           L+Q+ ++  K G L +  V + LV+   ++ G + YA  +F+K+   +V   N +I G  
Sbjct: 303 LEQLLTRVEKSGFLHDLYVGSALVS-GFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLV 361

Query: 92  RIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGK----ELHCHVLKFGF 146
           R    +  V ++++M  S ++ P++Y    +L  F     +E GK    E+H  +++ G 
Sbjct: 362 RQKRGEEAVELFMEMKDSVELNPNSYMI--ILTAFPEFHVLENGKRKGSEVHAFLIRSGL 419

Query: 147 -DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
            ++ + + N LI+ Y  CG ++ A  +F +    D VTWN+M +G  + KQF E  K F 
Sbjct: 420 LNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQ 479

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           EM R  + P++ T++  LS+CA L  + VG++ H    +  +  ++ + NAL  +Y  CG
Sbjct: 480 EMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECG 539

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            +    + F  + + D +SW +++                D  P                
Sbjct: 540 YVKECQKAFSLMLDYDHVSWNSLIGALA------------DSEPS--------------- 572

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
                EA+  F  M  +   P+  T ++IL A ++L   ELG+ +   + K  V  D  +
Sbjct: 573 ---MLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAI 629

Query: 386 GNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
            NAL+  Y KCGD+   + +F  M  R+D+ +W +MI G   N    K++DM   M++  
Sbjct: 630 ENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKG 689

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
              D  T+  VLSAC     ++ G E     +++  +E +      +VD+  + G ++ A
Sbjct: 690 QRLDGFTFATVLSACATVATLERGMEVHG-CSVRACLESDIVIGSALVDMYAKCGRIDYA 748

Query: 505 LEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAAKQILELD-PDNEAVYVLLCNIYA 562
               + MP + N   W +++ G  R     +  ++ A+  L+   PD    +V    + +
Sbjct: 749 SRFFEMMPAR-NLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPD----HVTFVGVLS 803

Query: 563 ACN 565
           AC+
Sbjct: 804 ACS 806



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 135/507 (26%), Positives = 235/507 (46%), Gaps = 47/507 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +++H Q  K G + +  + N L+    +  GD+    KVF ++P  ++  W+ +I GY+R
Sbjct: 93  EELHLQLFKNGFVNDLFLCNTLINIY-ARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTR 151

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR--DIAVEFGKELHCHVLKFGFDSSV 150
                    ++  M+     P++Y F  +++      +  ++FG ++H  + K  + + V
Sbjct: 152 NRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDV 211

Query: 151 FVQNALISTYC-LCGEVDMARGIFDVSYKDDVVTWNAMFSGY----KRVKQFDETRKLFG 205
              N LIS Y    G VD AR  FD  +  ++V+ N+M S Y      V  FD    +  
Sbjct: 212 TASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQK 271

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           E+   G+ P   T   ++SA   L +  +                ++LE  LT +  +  
Sbjct: 272 EVMGDGLKPNEYTFGSLISATCSLANSGL----------------VLLEQLLTRVEKS-- 313

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
             GF           D+   +A+V+G+   G +  A+  F +M  R+ V    +I G +R
Sbjct: 314 --GFL---------HDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVR 362

Query: 326 VNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEW----VKTYIDKNKVK 380
             R  EA+ LF EM+ S  + P+ + I  ILTA      LE G+     V  ++ ++ + 
Sbjct: 363 QKRGEEAVELFMEMKDSVELNPNSYMI--ILTAFPEFHVLENGKRKGSEVHAFLIRSGLL 420

Query: 381 N-DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
           N  I +GN LI+MY KCG +  A  VFR M  KD  TW +MI GL  N    +++  F +
Sbjct: 421 NAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQE 480

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M R  + P   T +  LS+C   G +  G +   +  ++ G++ + +    ++ L G  G
Sbjct: 481 MRRTELYPSNFTMISALSSCASLGWISVGEQLHCE-GLKLGLDLDVSVSNALLALYGECG 539

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGA 526
           ++ E  +    M +  + + W +L+GA
Sbjct: 540 YVKECQKAFSLM-LDYDHVSWNSLIGA 565



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 166/363 (45%), Gaps = 41/363 (11%)

Query: 10  PSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           PS  T    +IS + +C S+  +   +Q+H + +KLGL  + +V N L+     E G +K
Sbjct: 488 PSNFT----MISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALY-GECGYVK 542

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRID-SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
              K F  +       WN++I   +  + S    V  +L M+++   P+  TF  +L   
Sbjct: 543 ECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAV 602

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTW 184
           +     E GK++H  VLK    +   ++NAL++ Y  CG++     IF  +S + D V+W
Sbjct: 603 SSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSW 662

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N+M SGY   +   +   +   M +KG      T   VLSACA +  L+ G   H     
Sbjct: 663 NSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVR 722

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
             +  ++++ +AL DMYA CG + +A   F  +  +++ SW ++++GY   G        
Sbjct: 723 ACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGT----- 777

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                                     ++L LF +M+     PD  T V +L+AC++ G +
Sbjct: 778 --------------------------KSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLV 811

Query: 365 ELG 367
             G
Sbjct: 812 NEG 814


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/659 (38%), Positives = 368/659 (55%), Gaps = 38/659 (5%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A ++F +IP P +  +NT+I  Y+        + ++  M +  +  D +T   ++     
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCD 152

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNA 186
           D+ +    +LH   +  GFDS V V NAL++ Y   G++D A+ +F  +    D V+WN+
Sbjct: 153 DVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M   Y + ++  +   LF EM R+G+     T+  VL+A   L+DL  G + H  + +  
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              N  + + L D+Y+ CG                              G +   R+ F+
Sbjct: 271 FHQNSHVGSGLIDLYSKCG------------------------------GGMSDCRKVFE 300

Query: 307 QMPERDYVLWTAMIDGYLRVNRFRE-ALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
           ++ E D VLW  M+ GY +   F E AL  FR+MQ    RP++ + V +++AC+NL +  
Sbjct: 301 EITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPS 360

Query: 366 LGEWVKTYIDKNKV-KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
            G+ + +   K+ +  N I V NALI MY KCG+++ A+R+F  M   +  +  +MI G 
Sbjct: 361 QGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGY 420

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A +G   +SL +F  ML   I P  +T++ VLSAC HTG V+EG  YF  M  +  IEP 
Sbjct: 421 AQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPE 480

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HY CM+DLLGRAG L+EA  +I  MP  P SI W +LLGACR H + E+A  AA Q+L
Sbjct: 481 AEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVL 540

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           +L+P N A YV+L N+YA+  RW+    +R+ + DRG+KK PGCS IE+   +H FVA D
Sbjct: 541 QLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAED 600

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL-DVGEEDKERAVY--QHSEKLAMAFG 661
            SHP  KEIY  L+EM+  +K  GY+PD+    + D G    E+ +    HSEKLA+AFG
Sbjct: 601 SSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFG 660

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LIS+  G  + +VKNLR+C DCH   K +S +  RE+ VRD  RFH FK G CSC DYW
Sbjct: 661 LISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 153/305 (50%), Gaps = 6/305 (1%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L  C   +DL  GK  H    +  I P+    N    +Y+ CG + +A + F +I + +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V S+ AI+  Y    +  +A Q FDQ+PE D V +  +I  Y        AL LF  M+ 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             +  D FT+ +++TAC +   L +G+ + +    +   + + V NAL+  Y K GD++ 
Sbjct: 134 MGLDMDXFTLSAVITACCDDVGL-IGQ-LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDD 191

Query: 402 AQRVFREMLR-KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
           A+RVF  M   +D+ +W +MIV    +  G K+L +F +M+R  +  D  T   VL+A T
Sbjct: 192 AKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFT 251

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR-AGHLNEALEVIKNMPMKPNSIV 519
               +  G ++   + I+ G   N      ++DL  +  G +++  +V + +  +P+ ++
Sbjct: 252 CLEDLSGGLQFHGQL-IKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEI-TEPDLVL 309

Query: 520 WGALL 524
           W  ++
Sbjct: 310 WNTMV 314



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 179/402 (44%), Gaps = 15/402 (3%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           F  LLK    +  +  GK LH   +K     S +  N  I  Y  CG +  AR  F    
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
             +V ++NA+ + Y +  +     +LF ++      P  V+   ++SA A   +      
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPE----PDLVSYNTLISAYADCGETAPALG 126

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW----TAIVTGYI 293
               ++E  +  +    +A+  + A C ++G   ++     +    S+     A++T Y 
Sbjct: 127 LFSGMREMGLDMDXFTLSAV--ITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYG 184

Query: 294 NRGQVDMARQYFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
             G +D A++ F  M   RD V W +MI  Y +     +AL LF+EM    +  D FT+ 
Sbjct: 185 KNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLA 244

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC-GDVEKAQRVFREMLR 411
           S+LTA   L  L  G      + K     +  VG+ LID+Y KC G +   ++VF E+  
Sbjct: 245 SVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITE 304

Query: 412 KDKFTWTAMIVGLAINGHG-DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            D   W  M+ G + N    + +L+ F QM      P++ ++V V+SAC++     +G++
Sbjct: 305 PDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQ 364

Query: 471 YFADMTIQHGIEPNEAHY-GCMVDLLGRAGHLNEALEVIKNM 511
             + + ++  I  N       ++ +  + G+L +A  +   M
Sbjct: 365 IHS-LALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405



 Score = 42.7 bits (99), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 42/251 (16%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNP-TVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           +IS      S  Q KQIHS  +K  + +N  +V N L+    S+ G+++ A ++F ++  
Sbjct: 349 VISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAM-YSKCGNLQDARRLFDRMAE 407

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            +    N+MI GY++       + ++  ML+  + P + TF  +L        VE G   
Sbjct: 408 HNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNY 467

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
                                        +M +  F++  + +   ++ M     R  + 
Sbjct: 468 ----------------------------FNMMKEKFNI--EPEAEHYSCMIDLLGRAGKL 497

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV---KECKIVPNLILE 254
            E   L   M      P S+    +L AC    ++++  +A   V   +     P ++L 
Sbjct: 498 SEAENLIARMPFN---PGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLS 554

Query: 255 NALTDMYAACG 265
           N    MYA+ G
Sbjct: 555 N----MYASAG 561


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/586 (39%), Positives = 334/586 (56%), Gaps = 32/586 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           +++H HV+  G    + + N L+ TY     +D A  +FD     D  TW+ M  G+ + 
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
                    F E+ R GV P + T+  V+  C    DL +G+  H  V +  ++ +  + 
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
            +L DMYA C                       IV        V+ A++ F++M  +D V
Sbjct: 140 ASLVDMYAKC-----------------------IV--------VEDAQRLFERMLSKDLV 168

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            WT MI  Y   N + E+L LF  M+   + PD+  +V+++ ACA LGA+    +   YI
Sbjct: 169 TWTVMIGAYADCNAY-ESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYI 227

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            +N    D+ +G A+IDMY KCG VE A+ VF  M  K+  +W+AMI     +G G  ++
Sbjct: 228 VRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAI 287

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           D+F  ML  +I+P+ VT+V +L AC+H G+++EG  +F  M  +H + P+  HY CMVDL
Sbjct: 288 DLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDL 347

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L+EAL +I+ M ++ +  +W ALLGACR+H   E+AE AA  +LEL P N   Y
Sbjct: 348 LGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHY 407

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL NIYA   +W+   + R M+  R +KK PG + IE++   ++F  GD+SHPQ+KEIY
Sbjct: 408 VLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIY 467

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L  +   L+  GY+PD   V  DV EE K+  +Y HSEKLA+AFGLI+   G  IRI 
Sbjct: 468 EMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRIS 527

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+C DCH  +K+VS +  R +IVRD  RFHHF  G+CSC DYW
Sbjct: 528 KNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 198/398 (49%), Gaps = 35/398 (8%)

Query: 26  CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT 85
           C ++  ++Q+H+  +  G L +  + NKL+ +  ++   +  A  +F  +       W+ 
Sbjct: 13  CRNVFHIRQVHAHVVANGTLQDLVIANKLL-YTYAQHKAIDDAYSLFDGLTMRDSKTWSV 71

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           M+ G+++   H      + ++L+  V PDNYT PF+++       ++ G+ +H  VLK G
Sbjct: 72  MVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHG 131

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
             S  FV  +L+  Y  C  V+ A+ +F+     D+VTW  M   Y     + E+  LF 
Sbjct: 132 LLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY-ESLVLFD 190

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
            M  +GV+P  V +V V++ACAKL  +   + A+ Y+       ++IL  A+ DMYA CG
Sbjct: 191 RMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCG 250

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            +  A E+F  +K K+VISW+A++  Y   G                             
Sbjct: 251 SVESAREVFDRMKEKNVISWSAMIAAYGYHG----------------------------- 281

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIF 384
             R ++A+ LF  M +  I P+  T VS+L AC++ G +E G  +  +  +++ V+ D+ 
Sbjct: 282 --RGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVK 339

Query: 385 VGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
               ++D+  + G +++A R+   M + KD+  W+A++
Sbjct: 340 HYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALL 377


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/620 (39%), Positives = 364/620 (58%), Gaps = 55/620 (8%)

Query: 24  ETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCL 82
           E C SM  LK +H+Q I  GL        KL++FC   + GD++YA ++F +IP+P+  +
Sbjct: 122 EKCSSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFM 181

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           +N++I+GYS  D   + VL++  M+ S + P+ +T PF+LK      A      +H   +
Sbjct: 182 YNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAI 241

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K G  S VFVQNALI+ Y +CG +  AR +FD      +V+WN+M               
Sbjct: 242 KLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSM--------------- 286

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
               +E  GV                                 KI  ++I+ NAL DMYA
Sbjct: 287 ----IEITGV---------------------------------KI--DIIVRNALXDMYA 307

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG +  A  IF   + K+V+SWT++++ Y   G +++ARQ FDQMP ++ V W +MI  
Sbjct: 308 KCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISC 367

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           YLR  ++REAL LF +M+ S + PDE T+VSIL AC+ LG L +G+ +  YI  NK    
Sbjct: 368 YLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYG 427

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           + + N+LIDMY KCG V  A  +F EM  K+  +W  +I  LA++G G +++ +F +M  
Sbjct: 428 VTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQA 487

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
              +PDE+T  G+LSAC+H+G+VD G  YF  M + + +     HY CMVDLLGR G L 
Sbjct: 488 DGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLG 547

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           EA+E+I  MPMKP+ +VWGALLGACR+H + E+ +   KQ+LEL+P +  +YVL+ NIY 
Sbjct: 548 EAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYW 607

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
              RW++ +++R++++DRGIKK    S IE++G ++EF+  DK H  +  IY  LD++T 
Sbjct: 608 EAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTD 667

Query: 623 DLKFVGYMPDISEVFLDVGE 642
            L+  GY+ +IS VF +  E
Sbjct: 668 HLRSAGYLCNISSVFFEAEE 687


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/589 (39%), Positives = 356/589 (60%), Gaps = 34/589 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLC--GEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H HVLK G     F  + L++T  L   G +D A  IF    +     +N M  G  
Sbjct: 15  KQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNV 74

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
              + +E   L+ +M  +GV P   T   VL AC+ L  +D G + H +V +  +  ++I
Sbjct: 75  NDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVI 134

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           ++N+L +MY  CGE+  A ++                               F+ M E+ 
Sbjct: 135 VQNSLINMYGKCGEIKNACDV-------------------------------FNGMDEKS 163

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVK 371
              W+A+I  +  V  + E L L  +M +    R +E T+V++L+AC +LG+ +LG+ + 
Sbjct: 164 VASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIH 223

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
             + +N  + ++ V  +LIDMY K G +EK  RVF+ M  K+++++T MI GLAI+G G 
Sbjct: 224 GILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGK 283

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L +FS+M+   + PD+V YVGV SAC+H G+V+EG + F  M  +H IEP   HYGCM
Sbjct: 284 EALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCM 343

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGR G L EA E+IK+M +KPN ++W +LL AC+VH + E+ ++AA+ +  L+ +N 
Sbjct: 344 VDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNS 403

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             Y++L N+YA   +WD+  ++R  + +R + +TPG S+IE    V++FV+ DKS PQ  
Sbjct: 404 GDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWN 463

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            IY  + +M   LKF GY+PD S+V LDV +E+K+  +  HS+KLA+AFGLI +  G  +
Sbjct: 464 IIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPL 523

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI +NLRMC DCH   K +SM+Y+RE+ VRD+ RFHHFK+GSCSCKDYW
Sbjct: 524 RITRNLRMCSDCHTYTKYISMIYEREITVRDRLRFHHFKNGSCSCKDYW 572



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 201/403 (49%), Gaps = 35/403 (8%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK-GDMKYACKVFRKIPRPSVCLWNTMI 87
           M + KQ+H+  +K G+  +    + LV  C   K G M YAC +F +I  PS   +NTMI
Sbjct: 11  MEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMI 70

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           +G       +  +L+Y+DM++  V PD +T+PF+LK  +    V+ G ++H HV K G +
Sbjct: 71  RGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLE 130

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
             V VQN+LI+ Y  CGE+  A  +F+   +  V +W+A+   +  V+ ++E   L G+M
Sbjct: 131 GDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKM 190

Query: 208 ERKGVLPT-SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
             +G       T+V VLSAC  L   D+GK  H  +       N++++ +L DMY   G 
Sbjct: 191 SSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGC 250

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +   L +F N+  K+  S+T +++G    G                              
Sbjct: 251 LEKGLRVFKNMSEKNRYSYTVMISGLAIHG------------------------------ 280

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFV 385
            R +EAL +F EM    + PD+   V + +AC++ G +E G +  K+   ++K++  +  
Sbjct: 281 -RGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQH 339

Query: 386 GNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
              ++D+  + G +++A  + + M ++ +   W +++    ++
Sbjct: 340 YGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVH 382


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/738 (34%), Positives = 394/738 (53%), Gaps = 92/738 (12%)

Query: 43  GLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR---PSVCLWNTMIKGYSRIDSHKNG 99
           G  +N  + N LV    S  G ++ A  +F +I +     V  WN+++  + +  +    
Sbjct: 40  GFESNVFICNALVAMY-SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTA 98

Query: 100 VLIYLDML------KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           + ++  M        ++ R D  +   +L       AV   KE+H + ++ G    VFV 
Sbjct: 99  LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVG 158

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK--- 210
           NALI  Y  CG ++ A  +F++    DVV+WNAM +GY +   F    +LF  M ++   
Sbjct: 159 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIP 218

Query: 211 --------------------------------GVLPTSVTIVLVLSACAKLKDLDVGKRA 238
                                           G LP  VTI+ VLSACA L     G   
Sbjct: 219 LDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI 278

Query: 239 HRY-VKECKIV---------PNLILENALTDMYAACGEMGFALEIFGNI--KNKDVISWT 286
           H Y +K C +           +L++ NAL DMY+ C     A  IF +I  + ++V++WT
Sbjct: 279 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 338

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QTSNI 344
            ++ G+          QY D                        +AL LF EM  +   +
Sbjct: 339 VMIGGH---------AQYGDS----------------------NDALKLFVEMISEPYGV 367

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND--IFVGNALIDMYCKCGDVEKA 402
            P+ +TI  IL ACA+L A+ +G+ +  Y+ ++   +    FV N LI+MY KCGDV+ A
Sbjct: 368 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 427

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           + VF  M +K   +WT+M+ G  ++G G ++LD+F +M +A  +PD++T++ VL AC+H 
Sbjct: 428 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 487

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           GMVD+G  YF  M+  +G+ P   HY   +DLL R G L++A + +K+MPM+P ++VW A
Sbjct: 488 GMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVA 547

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL ACRVH + E+AE A  +++E++ +N+  Y L+ NIYA   RW +   +R ++   GI
Sbjct: 548 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGI 607

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK PGCS ++       F  GD+SHP + +IY  L+ +   +K +GY+P+ +    DV E
Sbjct: 608 KKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDE 667

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E+K   + +HSEKLA+A+GL+++ PG  IRI KNLR+C DCH     +S + D E++VRD
Sbjct: 668 EEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRD 727

Query: 703 KTRFHHFKHGSCSCKDYW 720
            +RFHHFK+GSCSC  YW
Sbjct: 728 PSRFHHFKNGSCSCGGYW 745



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/458 (31%), Positives = 231/458 (50%), Gaps = 39/458 (8%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           ML++  R D++T P +LK      +   G   H  +   GF+S+VF+ NAL++ Y  CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 166 VDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEM----------ERKGV 212
           ++ A  IFD   +   DDV++WN++ S + +         LF +M          ER  +
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
               ++IV +L AC  LK +   K  H          ++ + NAL D YA CG M  A++
Sbjct: 121 ----ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVK 176

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER----DYVLWTAMIDGYLRVNR 328
           +F  ++ KDV+SW A+V GY   G    A + F  M +     D V WTA+I GY +   
Sbjct: 177 VFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGC 236

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV--------- 379
             EAL +FR+M  S   P+  TI+S+L+ACA+LGA   G  +  Y  KN +         
Sbjct: 237 SHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGG 296

Query: 380 -KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDM 436
              D+ V NALIDMY KC   + A+ +F ++  +++   TWT MI G A  G  + +L +
Sbjct: 297 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 356

Query: 437 FSQMLRA--SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY--GCMV 492
           F +M+     + P+  T   +L AC H   +  G++  A   ++H    + A++   C++
Sbjct: 357 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHA-YVLRHHQYDSSAYFVANCLI 415

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           ++  + G ++ A  V  +M  K ++I W +++    +H
Sbjct: 416 NMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMH 452



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 162/358 (45%), Gaps = 25/358 (6%)

Query: 12  TLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLT----------NPTVQNKLVTFC 58
           +L     +IS +  C S+    Q   IH+ ++K  LLT          +  V N L+   
Sbjct: 252 SLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 311

Query: 59  CSEKGDMKYACKVFRKIP--RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS--DVRPD 114
            S+    K A  +F  IP    +V  W  MI G+++     + + ++++M+     V P+
Sbjct: 312 -SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPN 370

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKF-GFDSSV-FVQNALISTYCLCGEVDMARGI 172
            YT   +L       A+  GK++H +VL+   +DSS  FV N LI+ Y  CG+VD AR +
Sbjct: 371 AYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHV 430

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           FD   +   ++W +M +GY    +  E   +F +M + G +P  +T ++VL AC+    +
Sbjct: 431 FDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMV 490

Query: 233 DVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVT 290
           D G      +  +  + P         D+ A  G +  A +   ++      + W A+++
Sbjct: 491 DQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLS 550

Query: 291 GYINRGQVDMARQYFDQMPERDYV---LWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                  V++A    +++ E +      +T + + Y    R+++   +   M+ S I+
Sbjct: 551 ACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 608


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/676 (37%), Positives = 365/676 (53%), Gaps = 31/676 (4%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP-FLLKGFT 126
           A  +F K+P   +  WN M+ GY R         ++  M K DV   N     +   GF 
Sbjct: 96  ARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFV 155

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNA----------------LISTYCLCGE----- 165
            +    F K  H + + +    + +V N                 LIS  CL G      
Sbjct: 156 DEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRN 215

Query: 166 -VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
            +  AR +FD     DV++WN M SGY +V    + ++LF E   + V     T   ++S
Sbjct: 216 MLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVF----TWTAMVS 271

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
              +   +D    A +Y  E   V N I  NA+   Y    +M  A E+F  +  +++ S
Sbjct: 272 GYVQNGMVD---EARKYFDEMP-VKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISS 327

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           W  ++TGY   G +  AR+ FD MP+RD V W A+I GY +   + EAL +F EM+    
Sbjct: 328 WNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGE 387

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
             +  T    L+ CA++ ALELG+ V   + K   +   FVGNAL+ MY KCG  ++A  
Sbjct: 388 SSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEAND 447

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           VF  +  KD  +W  MI G A +G G ++L +F  M +A + PDE+T VGVLSAC+H+G+
Sbjct: 448 VFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGL 507

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           +D G EYF  M   + ++P   HY CM+DLLGRAG L EA  +++NMP  P +  WGALL
Sbjct: 508 IDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALL 567

Query: 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
           GA R+H + E+ E AA+ + +++P N  +YVLL N+YAA  RW +  ++R  + + G++K
Sbjct: 568 GASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQK 627

Query: 585 TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED 644
             G S +E+   +H F  GD  HP+   IY  L+E+   ++  GY+     V  DV EE+
Sbjct: 628 VTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEE 687

Query: 645 KERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKT 704
           KE  +  HSEKLA+AFG+++   G  IR++KNLR+C DCH   K +S +  R +I+RD  
Sbjct: 688 KEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSH 747

Query: 705 RFHHFKHGSCSCKDYW 720
           RFHHF  G CSC DYW
Sbjct: 748 RFHHFSEGICSCGDYW 763



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 210/474 (44%), Gaps = 79/474 (16%)

Query: 108 KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV-----------QNAL 156
           +S  R  N   P  +K    DI V + K +  H+     DS++ V            NA+
Sbjct: 25  RSKRRSTNSYSPSSVKFKDPDI-VTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAM 83

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           IS Y    +  +AR +FD   + D+ +WN M +GY R ++  E  KLF  M +K V    
Sbjct: 84  ISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDV---- 139

Query: 217 VTIVLVLSACAKLKDLD-----VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V+   +LS  A+   +D       K  HR         N I  N L   Y   G +  A 
Sbjct: 140 VSWNAMLSGYAQNGFVDEAREVFNKMPHR---------NSISWNGLLAAYVHNGRLKEAR 190

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            +F +  N ++ISW  ++ GY+ R  +  ARQ FD+MP RD + W  MI GY +V    +
Sbjct: 191 RLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQ 250

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG----- 386
           A  LF E   S IR D FT  ++++     G ++     + Y D+  VKN+I        
Sbjct: 251 AKRLFNE---SPIR-DVFTWTAMVSGYVQNGMVDE---ARKYFDEMPVKNEISYNAMLAG 303

Query: 387 -------------------------NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
                                    N +I  Y + G + +A+++F  M ++D  +W A+I
Sbjct: 304 YVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAII 363

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G A NGH +++L+MF +M R     +  T+   LS C     ++ G++    + ++ G 
Sbjct: 364 SGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQV-VKAGF 422

Query: 482 EPNEAHYGCMVD--LLG---RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           E      GC V   LLG   + G  +EA +V + +  K + + W  ++     H
Sbjct: 423 ET-----GCFVGNALLGMYFKCGSTDEANDVFEGIEEK-DVVSWNTMIAGYARH 470



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 195/425 (45%), Gaps = 72/425 (16%)

Query: 53  KLVTFCCSEKGDMKY-----ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML 107
           +L+++ C   G +K      A ++F ++P   V  WNTMI GY+++        ++ +  
Sbjct: 200 ELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE-- 257

Query: 108 KSDVRPDNYTFPFLLKGFTRDIAVEFGK----------ELHCHVLKFGFDS--------- 148
            S +R D +T+  ++ G+ ++  V+  +          E+  + +  G+           
Sbjct: 258 -SPIR-DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGE 315

Query: 149 --------SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
                   ++   N +I+ Y   G +  AR +FD+  + D V+W A+ SGY +   ++E 
Sbjct: 316 LFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEA 375

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             +F EM+R G      T    LS CA +  L++GK+ H  V +        + NAL  M
Sbjct: 376 LNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGM 435

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           Y  CG    A ++F  I+ KDV+SW  ++ GY        AR  F               
Sbjct: 436 YFKCGSTDEANDVFEGIEEKDVVSWNTMIAGY--------ARHGFG-------------- 473

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KV 379
                    R+AL LF  M+ + ++PDE T+V +L+AC++ G ++ G      +D++  V
Sbjct: 474 ---------RQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNV 524

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH---GDKSLD 435
           K        +ID+  + G +E+A+ + R M       +W A++    I+G+   G+K+ +
Sbjct: 525 KPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAE 584

Query: 436 MFSQM 440
           M  +M
Sbjct: 585 MVFKM 589



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 123/259 (47%), Gaps = 3/259 (1%)

Query: 47  NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM 106
           N +  N ++T    + G +  A K+F  +P+     W  +I GY++   ++  + ++++M
Sbjct: 324 NISSWNTMIT-GYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382

Query: 107 LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166
            +     +  TF   L       A+E GK++H  V+K GF++  FV NAL+  Y  CG  
Sbjct: 383 KRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGST 442

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
           D A  +F+   + DVV+WN M +GY R     +   LF  M++ GV P  +T+V VLSAC
Sbjct: 443 DEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSAC 502

Query: 227 AKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVIS 284
           +    +D G    +   ++  + P       + D+    G +  A  +  N+  +    S
Sbjct: 503 SHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAAS 562

Query: 285 WTAIVTGYINRGQVDMARQ 303
           W A++      G  ++  +
Sbjct: 563 WGALLGASRIHGNTELGEK 581



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 24/228 (10%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVT--FCCSEKGDMKYACKVFRKIPR 77
           + TC  +  L   KQ+H Q +K G  T   V N L+   F C   G    A  VF  I  
Sbjct: 398 LSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKC---GSTDEANDVFEGIEE 454

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
             V  WNTMI GY+R    +  ++++  M K+ V+PD  T   +L   +    ++ G E 
Sbjct: 455 KDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEY 514

Query: 138 HCHVLKFGFDSSVFVQNALISTYCL------CGEVDMARGIF-DVSYKDDVVTWNAMFSG 190
                 +  D    V+       C+       G ++ A  +  ++ +     +W A+  G
Sbjct: 515 F-----YSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALL-G 568

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA--CAKLKDLDVGK 236
             R+    E  +   EM  K + P +  + ++LS    A  + +DVGK
Sbjct: 569 ASRIHGNTELGEKAAEMVFK-MEPQNSGMYVLLSNLYAASGRWVDVGK 615


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/688 (37%), Positives = 392/688 (56%), Gaps = 44/688 (6%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF-- 120
           G ++ A +VF ++P   +  WN+M+ GY + +  +    ++      D  P+  T  +  
Sbjct: 30  GQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLF------DKMPERNTVSWNG 83

Query: 121 LLKGFTRDIAVE-----FGKELHCHVLKFGFDSSVFVQNALIS----------------- 158
           L+ G+ ++  V      F      +V+ +      +VQ  L+S                 
Sbjct: 84  LISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSW 143

Query: 159 TYCLCG-----EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           T  L G      +D ARG+FD+    DVV    M SGY +  +  E R+LF EM R+ V+
Sbjct: 144 TVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVI 203

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
             +  I    S   +   +DV ++    + E     N +   A+   Y   G +  A E+
Sbjct: 204 SWTTMI----SGYVQNGQVDVARKLFEVMPE----KNEVSWTAMLMGYTQGGRIEEASEL 255

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  K V++  A++ G+   G+V  ARQ FDQ+ E+D   W+AMI  Y R     EAL
Sbjct: 256 FDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEAL 315

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LF  MQ   ++ +  +++S+L+ CA+L +L+ G  V   + K++  +D+FV + LI MY
Sbjct: 316 NLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMY 375

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KCGD+ KA+++F     KD   W ++I G A +G  +++L +F +M  + +  D VT+V
Sbjct: 376 VKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFV 435

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
           GVLSAC++TG V EG E F  M  ++ +EP   HY CMVDLLGRAG +N+A+++I+ MP+
Sbjct: 436 GVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPV 495

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           + ++I+WGALLGACR H +  +AE+AAK++L+L+P N   Y+LL NIYA+  RW +  EL
Sbjct: 496 EADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAEL 555

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAG-DKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           R+ +  + + K+PGCS IE+   VH F  G    HP+   I   L+++   L+  GY PD
Sbjct: 556 RRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPD 615

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            S V  DV EE+K R++  HSE+LA+AFGL+    G+ IR++KNLR+C DCH   KL++ 
Sbjct: 616 SSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAK 675

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  RE+I+RD  RFHHFK G CSC+DYW
Sbjct: 676 ITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 178/378 (47%), Gaps = 55/378 (14%)

Query: 52  NKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNG-VLIYLDMLKSD 110
           N +  +C  ++G +  A ++F ++PR +V  W TMI GY      +NG V +   + +  
Sbjct: 176 NMISGYC--QEGRLAEARELFDEMPRRNVISWTTMISGYV-----QNGQVDVARKLFEVM 228

Query: 111 VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS----SVFVQNALISTYCLCGEV 166
              +  ++  +L G+T+   +E   EL        FD+    +V   NA+I  +   GEV
Sbjct: 229 PEKNEVSWTAMLMGYTQGGRIEEASEL--------FDAMPVKAVVACNAMILGFGQNGEV 280

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD-ETRKLFGEMERKGVLPTSVTIVLVLSA 225
             AR +FD   + D  TW+AM   Y+R K F+ E   LF  M+R+GV     +++ VLS 
Sbjct: 281 AKARQVFDQIREKDDGTWSAMIKVYER-KGFEVEALNLFALMQREGVQSNFPSLISVLSV 339

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           CA L  LD G++ H  + + +   ++ + + L  MY  CG++  A +IF     KD++ W
Sbjct: 340 CASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMW 399

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            +I+TGY   G V+                               EAL +F EM +S + 
Sbjct: 400 NSIITGYAQHGLVE-------------------------------EALQVFHEMCSSGMA 428

Query: 346 PDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
            D  T V +L+AC+  G ++ G E  ++   K  V+        ++D+  + G V  A  
Sbjct: 429 TDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMD 488

Query: 405 VFREM-LRKDKFTWTAMI 421
           + ++M +  D   W A++
Sbjct: 489 LIQKMPVEADAIIWGALL 506



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 187/416 (44%), Gaps = 41/416 (9%)

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           S     N+ I+ Y   G+++ AR +FD      +V+WN+M +GY +  +  E R LF +M
Sbjct: 14  SVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM 73

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
             +     +V+   ++S   K + +   ++A   + E     N++   A+   Y   G +
Sbjct: 74  PER----NTVSWNGLISGYVKNRMVSEARKAFDTMPE----RNVVSWTAMVRGYVQEGLV 125

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  +F  +  K+V+SWT ++ G I   ++D AR  FD MP +D V  T MI GY +  
Sbjct: 126 SEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEG 185

Query: 328 RFREALTLFREMQTSNI---------------------------RPDEFTIVSILTACAN 360
           R  EA  LF EM   N+                             +E +  ++L     
Sbjct: 186 RLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQ 245

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
            G +E         D   VK  +   NA+I  + + G+V KA++VF ++  KD  TW+AM
Sbjct: 246 GGRIEEA---SELFDAMPVKA-VVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAM 301

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I      G   ++L++F+ M R  +  +  + + VLS C     +D GR+  A++ ++  
Sbjct: 302 IKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAEL-VKSQ 360

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
            + +      ++ +  + G L +A ++      K + ++W +++     H   E A
Sbjct: 361 FDSDVFVASVLITMYVKCGDLVKARQIFDRFSPK-DIVMWNSIITGYAQHGLVEEA 415


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/714 (34%), Positives = 386/714 (54%), Gaps = 41/714 (5%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT---FCCSEKGDMKY 67
           S L Q  P  S +   + +  L+QIH+Q I  GL  N  + N L+    +C    G +  
Sbjct: 21  SPLAQ--PHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYC----GLLAD 74

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A ++F   P  +V  W  +I G ++ D     + ++ +M+  + +P+  T   +L  F  
Sbjct: 75  AKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFAN 134

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
              +   K +HC  ++ GF+ +VFV+ AL+  Y   G + +AR +F+   + +VVTWNA+
Sbjct: 135 LGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAI 194

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            SGY      +E   LF  M RKG+L    TI+ ++ A   +  L VG   H ++     
Sbjct: 195 VSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGY 254

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             +  ++ AL D+Y                               ++   VD A + F +
Sbjct: 255 ENDKHIKTALMDIY-------------------------------VSHNCVDDAHRVFSE 283

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALEL 366
           M  +D   WT M+ G+     +  A+  F +M    N++ D   ++ IL++C++ GAL+ 
Sbjct: 284 MSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQ 343

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G  V     K    N+IFVG+A+IDMY  CG++E A+R F  M  KD   W AMI G  +
Sbjct: 344 GRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGM 403

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           NG+G  ++D+F QM  + + PDE T+V VL AC+H GMV EG + F  M     + PN  
Sbjct: 404 NGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQ 463

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY C++D+LGRAG L+ A   I NMP +P+  V+  LLGACR+H + ++    +++I E+
Sbjct: 464 HYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEM 523

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           +P++   YVLL N+YA    W+  +  R  +  + +KK PG S IE+N  ++ F+AG+K 
Sbjct: 524 EPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKD 583

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           HPQ  +I   L  +   +K  GY+P+ + +  DV ++ K+  +Y HSEK+A+AFGL+ + 
Sbjct: 584 HPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTK 643

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           P   IRI KNLR C DCH  +K VS V+ R ++++D  RFH F+ G CSC+DYW
Sbjct: 644 PETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/529 (42%), Positives = 326/529 (61%), Gaps = 22/529 (4%)

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  V++V VL ACA +     GK  H          +L + NAL DMYA CG +  A ++
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD----YVLWTAMIDGYLRVNRF 329
           F  IK KDV+SW A+V GY   G+ + A   F++M E +     V W+A+I  + +    
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLG 130

Query: 330 REALTLFREMQTSN-----------------IRPDEFTIVSILTACANLGALELGEWVKT 372
            E L +FREMQ                    ++P+ FTI   L ACA L AL LG  +  
Sbjct: 131 CETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHA 190

Query: 373 YIDKNKVKND-IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
           YI +N   +  ++V N LIDMY K GD++ A+ VF  + +K+  +WT+++ G  ++G G 
Sbjct: 191 YILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGK 250

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L++F +M R  + PD VT + VL AC+H+GM+D+G E+F  M+ + G+ P + HY CM
Sbjct: 251 EALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACM 310

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAG LNEA+E+I+ M M+P+SIVW ALL  CR+H + E+ E AAKQ+LEL+ +N+
Sbjct: 311 VDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSEND 370

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             Y LL NIYA   RW +   +R ++ + GI+K PGCS ++       F   DK+HPQ+K
Sbjct: 371 GSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQSK 430

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           +IY  L  +T  +K +GY+P+ S    DV +E+K   +++HSEKLA+A+G++ S PG  I
Sbjct: 431 QIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGAPI 490

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI KNLR+C DCH     +SM+ D E+I+RD +RFHHFK GSCSC  YW
Sbjct: 491 RITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 155/375 (41%), Gaps = 86/375 (22%)

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
           D+RPD  +   +L       A   GK +H   ++ G    +FV NAL+  Y  CG VD A
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG------------------ 211
             +FD   + DVV+WNAM +GY ++ +F++   LF +M  +                   
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 212 ----------------------------------VLPTSVTIVLVLSACAKLKDLDVGKR 237
                                             V P   TI   L ACA+L  L +G++
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 238 AHRYVKECKI-VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
            H Y+         L + N L DMYA  G++  A  +F N+K K+ +SWT+++TGY   G
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
                                          R +EAL +F EM+   ++PD  T++ +L 
Sbjct: 248 -------------------------------RGKEALEVFDEMRRVGLQPDGVTLLVVLY 276

Query: 357 ACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
           AC++ G ++ G E+  +   +  V         ++D+  + G + +A  +   M +    
Sbjct: 277 ACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSS 336

Query: 415 FTWTAMIVGLAINGH 429
             W A++ G  I+ +
Sbjct: 337 IVWVALLSGCRIHAN 351



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 171/391 (43%), Gaps = 64/391 (16%)

Query: 17  TPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
             L++ +  C SM      K +H   ++ G   +  V N LV    ++ G +  A KVF 
Sbjct: 14  VSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMY-AKCGMVDEASKVFD 72

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIY------------------------------ 103
           +I    V  WN M+ GYS+I   ++ + ++                              
Sbjct: 73  RIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCE 132

Query: 104 -LD-------------------MLKSD--VRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
            LD                   M K D  V+P+ +T    L    R  A+  G+++H ++
Sbjct: 133 TLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYI 192

Query: 142 LKFGFDSS-VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           L+  FDS+ ++V N LI  Y   G++D+AR +FD   + + V+W ++ +GY    +  E 
Sbjct: 193 LRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEA 252

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENALTD 259
            ++F EM R G+ P  VT+++VL AC+    +D G +  +   KE  ++P       + D
Sbjct: 253 LEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVD 312

Query: 260 MYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDM----ARQYFDQMPERDYV 314
           +    G +  A+E+   ++     I W A+++G      V++    A+Q  +   E D  
Sbjct: 313 LLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSENDGS 372

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            +T + + Y    R+++   +   M+ S IR
Sbjct: 373 -YTLLSNIYANARRWKDVARVRSLMKNSGIR 402



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 133/297 (44%), Gaps = 44/297 (14%)

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
           ++RPD  ++V++L ACA++GA   G+ V     ++    D+FVGNAL+DMY KCG V++A
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
            +VF  +  KD  +W AM+ G +  G  + +L +F +M   +I  + V++  V++A    
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-----PMKPNS 517
           G+  E  + F +M  QH                   G  N+ALE+   M      +KPN 
Sbjct: 128 GLGCETLDVFREM--QH-------------------GEANDALELFSWMFKQDGLVKPNC 166

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC--NIYAACNRWDNFRELRQ 575
                 L AC       +       IL    D+  +YV  C  ++YA     D  R    
Sbjct: 167 FTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVAR---- 222

Query: 576 MILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
            + D  +K+    S   +       + G   H + KE     DEM    + VG  PD
Sbjct: 223 FVFDN-LKQKNFVSWTSL-------MTGYGMHGRGKEALEVFDEM----RRVGLQPD 267


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/662 (37%), Positives = 365/662 (55%), Gaps = 79/662 (11%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
            +GD+  A + F   PR +   +N ++ GY+R            D + +   PD      
Sbjct: 29  RRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT---PD------ 79

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
                    AV +   L CH     F S               G+ D AR +F      D
Sbjct: 80  ---------AVSYNTLLSCH-----FAS---------------GDADGARRLFASMPVRD 110

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           VV+WN M SG  +    +E + +F  M                                 
Sbjct: 111 VVSWNTMVSGLSKSGAVEEAKAVFLAMP-------------------------------- 138

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVD 299
                  V N +  NA+   +A   +M  A E F N   K D + WTA+V+GY++ G V 
Sbjct: 139 -------VRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVV 191

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTAC 358
            A +YF+ MP R+ V W A++ GY++ +   +AL LFR M + +N++P+  T+ S+L  C
Sbjct: 192 KAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 251

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           +NL AL  G+ +  +  K  +  ++ VG +L+ MYCKCGD+  A ++F EM  +D   W 
Sbjct: 252 SNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWN 311

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           AMI G A +G G +++++F +M    + P+ +T+V VL+AC HTG+ D G   F  M   
Sbjct: 312 AMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQEL 371

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           +GIEP   HY CMVDLL RAG L  A+++I++MP +P+   +G LL ACRV+++ E AE+
Sbjct: 372 YGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAEL 431

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           AA +++E DP +   YV L NIYA  N+WD+   +R+ + D  + KTPG S IE+ GV+H
Sbjct: 432 AAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMH 491

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
           EF + D+ HPQ   I+ KL ++   +K +GY+PD+  V  DV E  K + + +HSEKLA+
Sbjct: 492 EFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAI 551

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           +FGLIS+ PG+T+RI KNLR+C DCH  AK++S + DRE+I+RD TRFHHF+ G CSC D
Sbjct: 552 SFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGD 611

Query: 719 YW 720
           YW
Sbjct: 612 YW 613



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 168/366 (45%), Gaps = 40/366 (10%)

Query: 46  TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLD 105
           T   V    +  C    GD   A ++F  +P   V  WNTM+ G S+  + +    ++L 
Sbjct: 77  TPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLA 136

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           M    VR ++ ++  ++ GF     +   +E   +  + G      +  A++S Y   G 
Sbjct: 137 M---PVR-NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGN 189

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLS 224
           V  A   F+     ++V+WNA+ +GY +    D+  +LF  M R+  V P + T+  VL 
Sbjct: 190 VVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLL 249

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
            C+ L  L  GK+ H++  +  +  NL +  +L  MY  CG++  A ++FG +  +DV++
Sbjct: 250 GCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVA 309

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           W A+++GY   G                        DG       +EA+ LF  M+   +
Sbjct: 310 WNAMISGYAQHG------------------------DG-------KEAINLFERMKDEGV 338

Query: 345 RPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
            P+  T V++LTAC + G  + G    +   +   ++  +   + ++D+ C+ G +E+A 
Sbjct: 339 EPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAV 398

Query: 404 RVFREM 409
            + R M
Sbjct: 399 DLIRSM 404



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 21/247 (8%)

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR-VNRFREALTLFREMQTSNI 344
           T  V   + RG +  A + F   P +    +  ++ GY R + R  +A  LF  + T   
Sbjct: 21  TVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT--- 77

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
            PD  +  ++L+     G     +  +       V+ D+   N ++    K G VE+A+ 
Sbjct: 78  -PDAVSYNTLLSCHFASGD---ADGARRLFASMPVR-DVVSWNTMVSGLSKSGAVEEAKA 132

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           VF  M  ++  +W AM+ G A +     + + F     A    D V +  ++S     G 
Sbjct: 133 VFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRN---APEKGDAVLWTAMVSGYMDIGN 189

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKPNSIVW 520
           V +  EYF  M +++ +  N    G +     +  H ++AL + + M     ++PN+   
Sbjct: 190 VVKAIEYFEAMPVRNLVSWNAVVAGYV-----KNSHADDALRLFRTMVREANVQPNASTL 244

Query: 521 GALLGAC 527
            ++L  C
Sbjct: 245 SSVLLGC 251


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/648 (37%), Positives = 371/648 (57%), Gaps = 70/648 (10%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+S + T  S+ Q+ QIH+QT+  GL     +  KL+         + YA  V  + P P
Sbjct: 2   LLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDL-----HSIDYARFVLDQTPSP 56

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           +   WN++I+ Y+   S +N + +YL ML+S  +P N+TFPF+LK  +   +V  G+++H
Sbjct: 57  TDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIH 116

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
            HVL+ GF S +FV N+LI  YC C  +D AR  +D     D V+WN++ SGY +  Q +
Sbjct: 117 THVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVE 176

Query: 199 ETRKLFGEME-RKGVL---------------------------------PTSVTIVLVLS 224
           + R LF EM  R+ V+                                 P + T+V +LS
Sbjct: 177 KARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLS 236

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           AC+ L + +VG+    ++   KI  N IL  AL DMY+ CG+                  
Sbjct: 237 ACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGD------------------ 278

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                        V+ A + FD +  ++   W A+I G ++     EA+ L+R M+  ++
Sbjct: 279 -------------VEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSV 325

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           +P+E T+V++L+ACA LGALELG  V  Y+ +N +  ++ +  AL+DMY KCG ++ A  
Sbjct: 326 KPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACL 385

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           +F +   KD   W AMI+GLA +G G  SL +FSQM+RA + P++VT++GVLSAC H+G+
Sbjct: 386 IFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGL 445

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           V+EGR  F+ M  +HG+ P   HY CMVDLLGRAGHL EA E+++NM + P+SI+WGALL
Sbjct: 446 VEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALL 505

Query: 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
            ACR+HR+ E+A+  ++ I+     N    +LL NIYA+  RW +   +R+ + ++ IKK
Sbjct: 506 SACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKK 565

Query: 585 TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
             GCS +E++GVVH FV  D +H ++ EIY   + + + LK  GY+ +
Sbjct: 566 PSGCSWVEVDGVVHRFVVEDTTHLKSGEIYGAYEILVNHLKAEGYVAN 613


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/619 (38%), Positives = 365/619 (58%), Gaps = 11/619 (1%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC--SEKGDMKYACKVFRKI 75
           PL+S +E+C S  +L Q+H+     GL  +    ++L+ FC   +       A  + R  
Sbjct: 37  PLLSLLESCASFRRLLQLHALLTVTGLAAHRFPASRLLAFCALSTPPRLAHAAAILARAS 96

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG- 134
           P P+  +  TM++G+ R       + ++  +++  +  D  TF F +K        E G 
Sbjct: 97  PGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGG 156

Query: 135 -----KELHCHVLKFGF-DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
                + +HC  LK GF   SV V NAL+  Y     +D A  +FD   + DVV+W  + 
Sbjct: 157 TPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLV 216

Query: 189 SGYKRVKQFDETRKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            GY R    DE  +LF  M    G+ P +VT+V  +SA  ++  L  G   H+YV E  +
Sbjct: 217 DGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGV 276

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             ++ L+NAL DM+  CG + +A E+F  ++ KDV SWT++V  Y   G ++ A Q F  
Sbjct: 277 ARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKD 336

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           MP R+ V W+ MI  Y ++N+  EA+ LFREM  + + P + T+VS+L+ACA LG L+LG
Sbjct: 337 MPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLG 396

Query: 368 EWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
            W+ + YI  NK+   + +GNALIDM+ KCGDV +A ++F EM  ++  +W  MI+  A+
Sbjct: 397 RWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAV 456

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G  ++++ +F Q+   +I+PD++T++G+L++C+H+G+V EGR YF +M + + IEP   
Sbjct: 457 HGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVE 516

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY CM+DLLG+ G L EA EV + MPM+ +   WGALL ACR+H + E+    A +++EL
Sbjct: 517 HYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVEL 576

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           DP +  +YVL+  IYA+ N+WD  + LR  + DRG+KK PGCS IE+ G  H+F+  D S
Sbjct: 577 DPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLVADVS 636

Query: 607 HPQTKEIYLKLDEMTSDLK 625
           H  ++EIY  L  +   LK
Sbjct: 637 HACSEEIYSALKNIYFHLK 655


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/571 (39%), Positives = 351/571 (61%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           I    S++ +K++H+Q ++  +  +P+  ++++         +  A  VF +I RP++ +
Sbjct: 21  ISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLV 80

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN MI G S+ D   + +  Y  M    ++  + TF FL K   R   V  G+ +  H +
Sbjct: 81  WNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSM 140

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K GF+S +FV NALI  Y   GE+ MA+ +FD   + DVV+WN++  GY +  +F +   
Sbjct: 141 KLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLD 200

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           LF EM+   V   SVT++  +SA   L + ++G    +Y+ E  +V +L L N L DMY 
Sbjct: 201 LFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYG 260

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
             G + FA  +F  +K K+++SW A++ GY   G +  A++ F++MP RD + WT+MI G
Sbjct: 261 RRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIG 320

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           Y    +  EA+ LF+EM  S ++PDE T+ + L+ACA+LG+L+ GE V  YI K+ +K+D
Sbjct: 321 YSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSD 380

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           +FVGN+LIDMYCKCG VEKA +VF +M  +D  +WT++I GLA+NG  + +L++F QML+
Sbjct: 381 VFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLK 440

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             I P   T+VGVL AC H G+VD+G E+F  M   + + P   HYGC+VDLL R+G+L+
Sbjct: 441 EGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLD 500

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
            A   IK MP+ P+ ++W  LL AC++H +  +AE+ +K++L LDP N   YVL  + YA
Sbjct: 501 MAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYA 560

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
             +RWD+  ++R+++    ++K    S IE+
Sbjct: 561 GSDRWDDVIKIRKLMEVTNLQKPCAYSSIEV 591


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/654 (35%), Positives = 366/654 (55%), Gaps = 33/654 (5%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFT 126
           A +VF ++ + ++  W+ +I  ++    H    L Y  M++ + + P+  TF  LL GFT
Sbjct: 315 AAQVFGRMKQTNLITWSAIITAFAD-HGHCGEALRYFRMMQQEGILPNRVTFISLLNGFT 373

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
               +E    +H  + + G D +  ++NAL++ Y  C   D AR +FD     ++++WN+
Sbjct: 374 TPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNS 433

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M   Y + ++ D+  +LF  M+++G+ P  V  + +L AC         K  H+ V+E  
Sbjct: 434 MIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESG 493

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
           +  + +++ +L +MYA  GE+                               D+A     
Sbjct: 494 LGGSPLVQTSLVNMYAKAGEL-------------------------------DVAEVILQ 522

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
           +M E+    W  +I+GY    R REAL  ++++Q   I  D+ T +S+L AC +  +L  
Sbjct: 523 EMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAE 582

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+ + +   +  + +D+ V NAL +MY KCG +E A+R+F  M  +   +W  M+   A 
Sbjct: 583 GKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQ 642

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G  ++ L +  +M +  +  + +T+V VLS+C+H G++ EG +YF  +    GIE    
Sbjct: 643 HGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTE 702

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HYGC+VDLLGRAG L EA + I  MP++P  + W +LLGACRV +D +  ++AA ++LEL
Sbjct: 703 HYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLEL 762

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           DP N +  V+L NIY+    W N  +LR+ +  R +KK PG S I++   VHEF   D S
Sbjct: 763 DPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTS 822

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           HP+  EIY K++E+   ++  GY+PD   V  DV EE KE  +  HSEKLA+AFGLIS+ 
Sbjct: 823 HPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTP 882

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              ++ I KNLR+C DCH   K +S +  RE++VRD  RFHHF+ GSCSCKDYW
Sbjct: 883 ETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 153/535 (28%), Positives = 241/535 (45%), Gaps = 47/535 (8%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           S  G +  A   F KI   +V  WN MI  YS   S +  + ++  ML   V P+  T  
Sbjct: 3   SRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLV 62

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L        +  G  +H   L+ GF  +  V  AL++ Y  CG +  A+ +F+   + 
Sbjct: 63  AVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEK 122

Query: 180 DVVTWNAMFSGYK-RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           +VVTWNAM   Y  +   +    +LF  M  +GV    +T + VL++      L  GK  
Sbjct: 123 NVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFI 182

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H  V+E +                       +L++F N         TA+V  Y   G +
Sbjct: 183 HSCVRESE----------------------HSLDVFVN---------TALVNTYTKCGSL 211

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
             AR+ FD MP R    W +MI  Y    R  EA  +F+ MQ    R D  T +SIL AC
Sbjct: 212 TDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDAC 271

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
            N   L+ G+ V+  I +   + D+FVG ALI MY +C   E A +VF  M + +  TW+
Sbjct: 272 VNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWS 331

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA-CTHTGMVDEGREYFADMTI 477
           A+I   A +GH  ++L  F  M +  I+P+ VT++ +L+   T +G+ +  R +   +  
Sbjct: 332 AIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHL--LIT 389

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG---ACRVHRDAE 534
           +HG++        +V++ GR    ++A  V   + + PN I W +++G    C  H DA 
Sbjct: 390 EHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLEL-PNLISWNSMIGIYVQCERHDDA- 447

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE---LRQMILDRGIKKTP 586
           +      Q   + PD     V    I  AC    + R    + Q + + G+  +P
Sbjct: 448 LQLFRTMQQQGIQPDR----VNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSP 498



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 184/407 (45%), Gaps = 38/407 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIP 76
           L++   T   + +L +IH    + GL    T++N LV     C    D +    VF ++ 
Sbjct: 368 LLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDAR---TVFDQLE 424

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
            P++  WN+MI  Y + + H + + ++  M +  ++PD   F  +L   T        K 
Sbjct: 425 LPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKL 484

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  V + G   S  VQ +L++ Y   GE+D+A  I     +  +  WN + +GY    +
Sbjct: 485 VHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGR 544

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
             E  + + +++ + +    VT + VL+AC     L  GK  H    EC +  ++I++NA
Sbjct: 545 SREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNA 604

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           LT+MY+ CG M  A  IF ++  +  +SW  ++  Y   G+ +                 
Sbjct: 605 LTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESE----------------- 647

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYID 375
                         E L L R+M+   ++ +  T VS+L++C++ G +  G ++  +   
Sbjct: 648 --------------EVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGH 693

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
              ++        L+D+  + G +++A++   +M L     TW +++
Sbjct: 694 DRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLL 740



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 36/269 (13%)

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY+ CG +G A+  FG I+ ++V+SW                                 M
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSW-------------------------------NVM 29

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I  Y     F+EAL LF  M    + P+  T+V++L +C +   L  G  V     +   
Sbjct: 30  ISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFRELRDGILVHALSLERGF 89

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK-SLDMFS 438
             +  V  AL++MY KCG +  AQ VF EM  K+  TW AM+   ++ G   K ++++F+
Sbjct: 90  FQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFT 149

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-CMVDLLGR 497
           +ML   +  + +T++ VL++      + +G+  F    ++      +      +V+   +
Sbjct: 150 RMLLEGVKANVITFLNVLNSVVDPDALRKGK--FIHSCVRESEHSLDVFVNTALVNTYTK 207

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            G L +A +V   MP +     W +++ A
Sbjct: 208 CGSLTDARKVFDGMPCRSVG-TWNSMISA 235


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/596 (38%), Positives = 353/596 (59%), Gaps = 33/596 (5%)

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           R  A+  G+ +H H++K  +   V+++  LI  Y  C  +  AR +FDV  + +VV+W A
Sbjct: 70  RKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTA 129

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M S Y +     +   LF +M R G  P   T   VL++C       +G++ H ++ +  
Sbjct: 130 MISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLN 189

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              ++ + ++L DMYA                 KD              G++  AR  F 
Sbjct: 190 YEAHVYVGSSLLDMYA-----------------KD--------------GKIHEARGIFQ 218

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
            +PERD V  TA+I GY ++    EAL LFR +Q   ++ +  T  S+LTA + L AL+ 
Sbjct: 219 CLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDH 278

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+ V  ++ +++V + + + N+LIDMY KCG++  A+R+F  +  +   +W AM+VG + 
Sbjct: 279 GKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSK 338

Query: 427 NGHGDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI-QHGIEPN 484
           +G G + L++F+ M+    + PD VT + VLS C+H G+ D+G + F DMT  +  ++P+
Sbjct: 339 HGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPD 398

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGC+VD+LGRAG +  A E +K MP +P++ +WG LLGAC VH + ++ E    Q+L
Sbjct: 399 SKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLL 458

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           +++P+N   YV+L N+YA+  RW++ R LR ++L + + K PG S IE++ V+H F A D
Sbjct: 459 QIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASD 518

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
            SHP+ +E+  K+ E+++  K  GY+PD+S V  DV EE KE+ +  HSEKLA+ FGLI+
Sbjct: 519 CSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIA 578

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +   V IR++KNLR+CVDCH  AK  S +Y REV +RDK RFH    G CSC DYW
Sbjct: 579 TPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 194/398 (48%), Gaps = 47/398 (11%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           +++H+  IK   L    ++ +L+ F   C    D ++   VF  +P  +V  W  MI  Y
Sbjct: 78  QRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARH---VFDVMPERNVVSWTAMISAY 134

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           S+       + +++ ML+S   P+ +TF  +L           G+++H H++K  +++ V
Sbjct: 135 SQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHV 194

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
           +V ++L+  Y   G++  ARGIF    + DVV+  A+ SGY ++   +E  +LF  ++R+
Sbjct: 195 YVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQRE 254

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G+    VT   VL+A + L  LD GK+ H ++   ++   ++L+N+L DMY+ CG + +A
Sbjct: 255 GMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYA 314

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
             IF  +  + VISW A++ GY   G+                                R
Sbjct: 315 RRIFDTLHERTVISWNAMLVGYSKHGE-------------------------------GR 343

Query: 331 EALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYID----KNKVKNDIFV 385
           E L LF  M   N ++PD  T++++L+ C++ G  + G  +  + D    K  V+ D   
Sbjct: 344 EVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKG--MDIFYDMTSGKISVQPDSKH 401

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
              ++DM  + G VE A     E ++K  F  +A I G
Sbjct: 402 YGCVVDMLGRAGRVEAA----FEFVKKMPFEPSAAIWG 435


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/555 (39%), Positives = 336/555 (60%), Gaps = 13/555 (2%)

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           +  A  IF  +   +V  + A+  G      + +   L+ +M    ++P S  +  VL A
Sbjct: 80  IGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKA 139

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           C     L  G+  H  V +  +  N  +   L ++Y  CG    A  +F  +  +DV++ 
Sbjct: 140 CGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVAS 199

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           T ++  Y + G              +D V WTAMIDG +R      AL +FR MQ  ++ 
Sbjct: 200 TVMINYYFDHGI-------------KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVM 246

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           P+E TIV +L+AC+ LGAL+LG WV++Y+DK++++ + FVG ALI+MY +CGD+++AQRV
Sbjct: 247 PNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRV 306

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F +M  K+  T+ +MI+G A++G   +++++F  +++    P  VT+VGVL+AC+H G+ 
Sbjct: 307 FEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLA 366

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           + G E F  M   +GIEP   HYGCMVDLLGR G L EA   I+ M + P+ ++ GALL 
Sbjct: 367 ELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLS 426

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           AC++H + E+AE  AK ++     +   Y+LL N Y++  +W    E+R  + + GI+K 
Sbjct: 427 ACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKE 486

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
           PGCS IE+N  +HEF+ GD  HPQ ++IY KL+E+   L+  GY P    V  D+ + +K
Sbjct: 487 PGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEK 546

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           E A+  HSE+LA+ +GLIS+ P  T+R+VKNLR+C DCH   KL+S +  R+++VRD+ R
Sbjct: 547 EWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNR 606

Query: 706 FHHFKHGSCSCKDYW 720
           FHHF++G CSC DYW
Sbjct: 607 FHHFENGVCSCGDYW 621



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 135/500 (27%), Positives = 230/500 (46%), Gaps = 56/500 (11%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           NS   P +T  +    IS ++ C+  +Q+  I+++ I+     +P V  +L+  C S   
Sbjct: 20  NSGTKPKNTPNRRRHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVC-SNLN 78

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            + YA K+F     P+V L+  +I G      + +G+ +Y  M+ S + PD+Y    +LK
Sbjct: 79  SIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLK 138

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
                +A++ G+E+H  VLK G  S+  ++  LI  Y  CG  + AR +FD   + DVV 
Sbjct: 139 ACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVA 198

Query: 184 ------------------WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
                             W AM  G  R  + +   ++F  M+R+ V+P  VTIV VLSA
Sbjct: 199 STVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSA 258

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           C++L  L +G+    Y+ + +I  N  +  AL +MY+ CG++  A  +F  +K K+VI++
Sbjct: 259 CSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITY 318

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            +++ G+   G                               +  EA+ LFR +      
Sbjct: 319 NSMIMGFALHG-------------------------------KSVEAVELFRGLIKQGFT 347

Query: 346 PDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           P   T V +L AC++ G  ELG E   +      ++  I     ++D+  + G +E+A  
Sbjct: 348 PSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYS 407

Query: 405 VFREM-LRKDKFTWTAMIVGLAINGHGDKSL-DMFSQMLRASIIPDEVTYVGVLSACTHT 462
             R M +  D     A++    I  HG+  L +  ++ L A    D  TY+ + +A + +
Sbjct: 408 FIRMMKVAPDHVMLGALLSACKI--HGNLELAERVAKSLVACKNADSGTYILLSNAYSSS 465

Query: 463 GMVDEGREYFADMTIQHGIE 482
           G   E  E   +M  + GIE
Sbjct: 466 GKWKEAAEVRTNMR-EEGIE 484


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/687 (34%), Positives = 394/687 (57%), Gaps = 34/687 (4%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IH   +K     +  V N L+    ++ G M+ A +VF  +       WNT++ G  + +
Sbjct: 270 IHGAVLKSNHFADVYVANALIAMY-AKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNE 328

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
            + + +  + DM  S  +PD  +   L+    R   +  GKE+H + ++ G DS++ + N
Sbjct: 329 LYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGN 388

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
            L+  Y  C  V      F+  ++ D+++W  + +GY + +   E   LF +++ KG+  
Sbjct: 389 TLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDV 448

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
             + I  VL AC+ LK  +  +  H YV + + + +++L+NA+ ++Y   GE+G      
Sbjct: 449 DPMMIGSVLRACSGLKSRNFIREIHGYVFK-RDLADIMLQNAIVNVY---GEVG------ 498

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
                                  +D AR+ F+ +  +D V WT+MI   +      EAL 
Sbjct: 499 ----------------------HIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALE 536

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LF  ++ +NI+PD   I+S L+A ANL +L+ G+ +  ++ +     +  + ++L+DMY 
Sbjct: 537 LFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYA 596

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
            CG VE ++++F  + ++D   WT+MI    ++G G+K++ +F +M   ++IPD +T++ 
Sbjct: 597 CCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLA 656

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           +L AC+H+G++ EG+ +F  M   + +EP   HY CMVDLL R+  L EA   ++NMP+K
Sbjct: 657 LLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIK 716

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
           P+S +W ALLGAC +H + E+ E+AAK++L+ D +N   Y L+ NI+AA  RW++  E+R
Sbjct: 717 PSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVR 776

Query: 575 QMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL-KFVGYMPDI 633
             +   G+KK PGCS IE++  +H F+A DKSHPQT +IYLKL + T  L K  GY+   
Sbjct: 777 LRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQT 836

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
             VF +V EE+K + +Y HSE+LA+ +GL+ +  G  IRI KNLR+C DCH   K+ S V
Sbjct: 837 KFVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEV 896

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
             R ++VRD  RFHHF+ G CSC D+W
Sbjct: 897 SQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/540 (26%), Positives = 246/540 (45%), Gaps = 60/540 (11%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           + S   ++ PS L     L+  ++ C   +++ Q +Q+H+  +K  L  +  +  KLV  
Sbjct: 33  LLSTHPLATPSRLEHAHSLL--LDLCVAAKALPQGQQLHALLLKSHL--SAFLATKLVLM 88

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
              + G ++ A KVF ++   ++  WN ++  +     +   + +Y DM    V  D  T
Sbjct: 89  Y-GKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACT 147

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD--V 175
           FP +LK          G E+H   +K G+   VFV NALI+ Y  CG++  AR +FD  +
Sbjct: 148 FPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIM 207

Query: 176 SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
             K+D V+WN++ S +       E   LF  M+  GV   + T V  L        + +G
Sbjct: 208 MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
              H  V +     ++ + NAL  MYA CG M                            
Sbjct: 268 MGIHGAVLKSNHFADVYVANALIAMYAKCGRM---------------------------- 299

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
              + A + F+ M  RDYV W  ++ G ++   + +AL  FR+MQ S  +PD+ ++++++
Sbjct: 300 ---EDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLI 356

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
            A    G L  G+ V  Y  +N + +++ +GN L+DMY KC  V+     F  M  KD  
Sbjct: 357 AASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLI 416

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY---- 471
           +WT +I G A N    +++++F ++    +  D +    VL AC+     +  RE     
Sbjct: 417 SWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYV 476

Query: 472 ----FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
                AD+ +Q+ I          V++ G  GH++ A    +++  K + + W +++  C
Sbjct: 477 FKRDLADIMLQNAI----------VNVYGEVGHIDYARRAFESIRSK-DIVSWTSMITCC 525



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 180/420 (42%), Gaps = 69/420 (16%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTF---CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
           K++H+  I+ GL +N  + N LV     CC     +KY    F  +    +  W T+I G
Sbjct: 369 KEVHAYAIRNGLDSNMQIGNTLVDMYAKCCC----VKYMGHAFECMHEKDLISWTTIIAG 424

Query: 90  YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
           Y++ + H   + ++  +    +  D      +L+  +   +  F +E+H +V K    + 
Sbjct: 425 YAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-AD 483

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           + +QNA+++ Y   G +D AR  F+     D+V+W +M +         E  +LF  +++
Sbjct: 484 IMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ 543

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
             + P S+ I+  LSA A L  L  GK  H ++          + ++L DMYA CG +  
Sbjct: 544 TNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVEN 603

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           + ++F ++K +D+I WT+++      G  +                              
Sbjct: 604 SRKMFHSVKQRDLILWTSMINANGMHGCGN------------------------------ 633

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGAL--------------ELGEWVKTYID 375
            +A+ LF++M   N+ PD  T +++L AC++ G +              +L  W + Y  
Sbjct: 634 -KAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYA- 691

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSL 434
                        ++D+  +   +E+A    R M ++     W A++    I  H +K L
Sbjct: 692 ------------CMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHI--HSNKEL 737



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 99/211 (46%), Gaps = 2/211 (0%)

Query: 27  ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
           +S + +++IH    K  L  +  +QN +V     E G + YA + F  I    +  W +M
Sbjct: 464 KSRNFIREIHGYVFKRDL-ADIMLQNAIVNVY-GEVGHIDYARRAFESIRSKDIVSWTSM 521

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           I            + ++  + +++++PD+      L       +++ GKE+H  +++ GF
Sbjct: 522 ITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGF 581

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
                + ++L+  Y  CG V+ +R +F    + D++ W +M +        ++   LF +
Sbjct: 582 FLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKK 641

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           M  + V+P  +T + +L AC+    +  GKR
Sbjct: 642 MTDQNVIPDHITFLALLYACSHSGLMVEGKR 672


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/716 (34%), Positives = 384/716 (53%), Gaps = 43/716 (6%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+ +T    L+  +  C  + Q + IHS   + GL     V   L +   +  G +  A 
Sbjct: 226 PARIT----LVITLSVCAKIRQARAIHSIVRESGLEQTLVVSTALAS-AYARLGHLDQAK 280

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF +     V  WN M+  Y++        L++  ML   + P   T   L+   T   
Sbjct: 281 EVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVT---LVNASTGCS 337

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           ++ FG+ +H   L+ G D  + + NAL+  Y  CG  + AR +F+     + V+WN M +
Sbjct: 338 SLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFE-GIPGNAVSWNTMIA 396

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA----KLKDLDVGKRAHRYVKEC 245
           G  +  Q     +LF  M+ +G+ P   T + +L A A    + + +  G++ H  +  C
Sbjct: 397 GSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSC 456

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
                  +  A+  MYA+CG +  A   F                    RG ++      
Sbjct: 457 GYASEPAIGTAVVKMYASCGAIDEAAASF-------------------QRGAME------ 491

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
                 D V W A+I    +    + AL  FR M    + P++ T V++L ACA   AL 
Sbjct: 492 ---DRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALT 548

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGL 424
            G  V  ++  + +++++FV  AL  MY +CG +E A+ +F ++ + +D   + AMI   
Sbjct: 549 EGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAY 608

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           + NG   ++L +F +M +    PDE ++V VLSAC+H G+ DEG E F  M   +GI P+
Sbjct: 609 SQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPS 668

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
           E HY C VD+LGRAG L +A E+I+ M +KP  +VW  LLGACR +RD +   +A   + 
Sbjct: 669 EDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVR 728

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           ELDP +E+ YV+L NI A   +WD   E+R  +  RG++K  G S IE+   VHEFVAGD
Sbjct: 729 ELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGD 788

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           +SHP+++EIY +L+ + ++++ +GY+PD   V   V E +KER + QHSE+LA+A G++S
Sbjct: 789 RSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMS 848

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S    T+R++KNLR+C DCH   K +S + ++E++VRD  RFHHF  GSCSC DYW
Sbjct: 849 SSTD-TVRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 160/660 (24%), Positives = 282/660 (42%), Gaps = 107/660 (16%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CS 60
           S+S  + P+ L +   L+        + Q ++IH++ + LGL     + N L+     C 
Sbjct: 22  SSSGATRPAHLVR---LLRAAGDDRLLSQGRRIHARIVSLGL--EEELGNHLLRLYLKCE 76

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
             GD++   +VF ++       W T+I  Y+     K  + ++  M +  VR D  TF  
Sbjct: 77  SLGDVE---EVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLA 133

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +LK   R   +  G+ +H  +++ G +    + N L+  Y  CG V  A  +F+   + D
Sbjct: 134 VLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFE-RMERD 192

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           +V+WNA  +   +    D   +LF  M+ +GV P  +T+V+ LS CAK++     +  H 
Sbjct: 193 LVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQ---ARAIHS 249

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
            V+E  +   L++  AL   YA  G +  A E+F     +DV+SW A++  Y   G +  
Sbjct: 250 IVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSE 309

Query: 301 ARQYFDQM-----P-------------------------------ERDYVLWTAMIDGYL 324
           A   F +M     P                               +RD VL  A++D Y 
Sbjct: 310 AALLFARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYT 369

Query: 325 RV------------------------------NRFREALTLFREMQTSNIRPDEFTIVSI 354
           R                                + + AL LF+ MQ   + P   T +++
Sbjct: 370 RCGSPEEARHLFEGIPGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNL 429

Query: 355 LTACAN----LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           L A A+      A+  G  + + I      ++  +G A++ MY  CG +++A   F+   
Sbjct: 430 LEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGA 489

Query: 411 ---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
              R D  +W A+I  L+ +GHG ++L  F +M    + P+++T V VL AC     + E
Sbjct: 490 MEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTE 549

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
           G     D     G+E N      +  + GR G L  A E+ + + ++ + +++ A++ A 
Sbjct: 550 G-VIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA- 607

Query: 528 RVHRDAEMAEMAAKQILELD-----PDNEAVYVLLCNIYAACNR-------WDNFRELRQ 575
             +    +A  A K    +      PD ++      ++ +AC+        W+ FR +RQ
Sbjct: 608 --YSQNGLAGEALKLFWRMQQEGSRPDEQS----FVSVLSACSHGGLADEGWEIFRSMRQ 661



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 134/283 (47%), Gaps = 10/283 (3%)

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
           + F ++  RD   WT +I  Y    + + A+ +F  MQ   +R D  T +++L ACA LG
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            L  G  +  +I ++ ++    + N L+ +Y  CG V  A  +F E + +D  +W A I 
Sbjct: 143 DLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLF-ERMERDLVSWNAAIA 201

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
             A +G  D +L++F +M    + P  +T V  LS C     + + R   + +  + G+E
Sbjct: 202 ANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAK---IRQARAIHS-IVRESGLE 257

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD-AEMAEMAAK 541
                   +     R GHL++A EV  +   + + + W A+LGA   H   +E A + A+
Sbjct: 258 QTLVVSTALASAYARLGHLDQAKEVF-DRAAERDVVSWNAMLGAYAQHGHMSEAALLFAR 316

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
            + E  P ++   V L N    C+     R +    L++G+ +
Sbjct: 317 MLHEGIPPSK---VTLVNASTGCSSLRFGRMIHACALEKGLDR 356


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/715 (34%), Positives = 396/715 (55%), Gaps = 41/715 (5%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           P+T T     ++ ++ CE    +KQ   IH+  +K     N  V N L+    +  G M 
Sbjct: 316 PNTYT----FVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMY-ARFGKMG 370

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
            A  +F  +       WN+M+ G+ +   +   +  Y +M  +  +PD      ++    
Sbjct: 371 EAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA 430

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           R      G ++H + +K G DS + V N+L+  Y     +     IFD     DVV+W  
Sbjct: 431 RSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTT 490

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + +G+ +        +LF E++ +G+    + I  +L AC+ LK +   K  H Y+   K
Sbjct: 491 IIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR-K 549

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
            + +L+L+N + D+Y  CG                                VD A + F+
Sbjct: 550 GLSDLVLQNGIVDVYGECG-------------------------------NVDYAARMFE 578

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
            +  +D V WT+MI  Y+      EAL LF  M+ + + PD  ++VSIL+A A+L AL+ 
Sbjct: 579 LIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKK 638

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+ +  ++ +     +  + + L+DMY +CG +EK++ VF  +  KD   WT+MI    +
Sbjct: 639 GKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGM 698

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G  ++D+F +M   SI PD + +V VL AC+H+G+++EGR +   M  ++ +EP   
Sbjct: 699 HGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPE 758

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY C+VDLLGRA HL EA + +K M ++P + VW ALLGAC++H + E+ E+AA+++LE+
Sbjct: 759 HYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEM 818

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           DP+N   YVL+ N+YAA  RW +  E+R  +   G+KK PGCS IE+   VH F+A DKS
Sbjct: 819 DPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKS 878

Query: 607 HPQTKEIYLKLDEMTSDL-KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           HPQ+ EIY KL ++T  L K  GY+     V  +  EE+K + +Y HSE+LA+A+G++++
Sbjct: 879 HPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTT 938

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             G ++RI KNLR+C DCH   KL+S  ++RE+++RD  RFHHFK G CSC D W
Sbjct: 939 PEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 156/544 (28%), Positives = 259/544 (47%), Gaps = 62/544 (11%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTF 57
           +F+N S   PS  + +    S +E C S   L   +Q+H+  I    L N    +  + F
Sbjct: 102 LFANQS---PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVF 158

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
              + G +  A K+F  +P  ++  WN MI  Y         + +Y +M  S +  D  T
Sbjct: 159 MYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACT 218

Query: 118 FPFLLK--GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD- 174
           FP +LK  G  +D     G E+H   +K G+ S VFV N+++  Y  C +++ AR +FD 
Sbjct: 219 FPCILKACGLLKD--RRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDR 276

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
           +  K+DVV+WN+M S Y    Q  E  +LFGEM++  + P + T V  L AC     +  
Sbjct: 277 MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQ 336

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G   H  V +     N+ + NAL  MYA  G+MG A  IF N+ + D ISW ++++G++ 
Sbjct: 337 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 396

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G                                + EAL  + EM+ +  +PD   ++SI
Sbjct: 397 NG-------------------------------LYHEALQFYHEMRDAGQKPDLVAVISI 425

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           + A A  G    G  +  Y  KN + +D+ VGN+L+DMY K   ++    +F +M  KD 
Sbjct: 426 IAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDV 485

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY--- 471
            +WT +I G A NG   ++L++F ++    I  D +    +L AC+   ++   +E    
Sbjct: 486 VSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSY 545

Query: 472 -----FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
                 +D+ +Q+GI          VD+ G  G+++ A  + + +  K + + W +++ +
Sbjct: 546 IIRKGLSDLVLQNGI----------VDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-S 593

Query: 527 CRVH 530
           C VH
Sbjct: 594 CYVH 597


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/553 (41%), Positives = 336/553 (60%), Gaps = 32/553 (5%)

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           AR +F+   + D+V +N+M  GY R     E   LF E+   G+LP + T   +L ACA 
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
            K L+ G++ H    +  +  N+ +   L +MY  C +                      
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECED---------------------- 179

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
                    VD AR  FD++ E   V + AMI GY R NR  EAL+LFREMQ   ++P+E
Sbjct: 180 ---------VDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNE 230

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T++S+L++CA LG+L+LG+W+  Y  K+     + V  ALIDM+ KCG ++ A  +F +
Sbjct: 231 ITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEK 290

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M  KD   W+AMIV  A +G  +KS+ MF +M   ++ PDE+T++G+L+AC+HTG V+EG
Sbjct: 291 MRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEG 350

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           R+YF+ M  + GI P+  HYG MVDLL  AG+L +A E I  +P+ P  ++W  LL AC 
Sbjct: 351 RKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACS 410

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
            H + ++AE  +++I ELD  +   YV+L N+YA   +W+    LR+++ DR   K PGC
Sbjct: 411 SHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGC 470

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF-LDVGEEDKER 647
           S IE+N VVHEF +GD     T +++  LDEM  +LK  GY+PD S V   ++ +++KE 
Sbjct: 471 SSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEI 530

Query: 648 AVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFH 707
            +  HSEKLA+ FGL+++ PG TIR+VKNLR+C DCH  AKL+S+++ R+V+ RD  RFH
Sbjct: 531 TLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFH 590

Query: 708 HFKHGSCSCKDYW 720
           HF+ G CSC D+W
Sbjct: 591 HFEDGKCSCGDFW 603



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 208/394 (52%), Gaps = 36/394 (9%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE--KGDMKYAC 69
           T+  + P++  I  C S+ +L QI +  IK   + + +   KL+ FC     +  M YA 
Sbjct: 26  TVNTQNPILL-ISKCNSLRELMQIQAYAIK-SHIEDVSFVAKLINFCTESPTESSMSYAR 83

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
            +F  +  P + ++N+M +GYSR  +      +++++L+  + PDNYTFP LLK      
Sbjct: 84  HLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAK 143

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A+E G++LHC  +K G D +V+V   LI+ Y  C +VD AR +FD   +  VV +NAM +
Sbjct: 144 ALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMIT 203

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY R  + +E   LF EM+ K + P  +T++ VLS+CA L  LD+GK  H+Y K+     
Sbjct: 204 GYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
            + +  AL DM+A CG +  A+ IF  ++ KD  +W+A++  Y N G+ +          
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAE---------- 313

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-E 368
                                +++ +F  M++ N++PDE T + +L AC++ G +E G +
Sbjct: 314 ---------------------KSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRK 352

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
           +    + K  +   I    +++D+    G++E A
Sbjct: 353 YFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDA 386


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/621 (37%), Positives = 345/621 (55%), Gaps = 41/621 (6%)

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
           L  L +   P   ++  + +  T    ++ G ++H H+L  G   +  V + +++ Y   
Sbjct: 59  LQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASS 118

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G++D                          V  F+     F             T   VL
Sbjct: 119 GDID------------------------SSVSVFNGIGDYF-------------TFPFVL 141

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            +  +L  + +GK  H  +    +  +L +  +L  +Y  CGE+  A ++F N+  +DV 
Sbjct: 142 KSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVS 201

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QT 341
           SW A++ GY   G +D A   F++MP R+ V WT MI GY +    ++AL+LF EM  + 
Sbjct: 202 SWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKED 261

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
           S +RP+  TI+S+L ACA L  LE G  +     +  + ++  V  AL  MY KCG +  
Sbjct: 262 SGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVD 321

Query: 402 AQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           A+  F ++ R +K    W  MI   A  GHG +++  F +M++A I PD++T+ G+LS C
Sbjct: 322 ARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGC 381

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H+G+VD G +YF  M+  + I P   HY C+ DLLGRAG L EA +++  MPM     +
Sbjct: 382 SHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSI 441

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           WG+LL ACR HR+ EMAE AA+++  L+P+N   YVLL N+YA   RW    +LR ++  
Sbjct: 442 WGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKS 501

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
           +G KK+PGCS IE+NG  H F+ GD SHPQ KEIY+ L+ +   +K  GY PD S V  D
Sbjct: 502 QGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHD 561

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           + EE+KE  +  HSEKLA+AFG++++     +R+ KNLR+C DCH     +S +Y REVI
Sbjct: 562 ISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVI 621

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           VRD  RFHHFK G CSC DYW
Sbjct: 622 VRDINRFHHFKGGCCSCGDYW 642



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 187/444 (42%), Gaps = 83/444 (18%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM 65
           ++ PPS+   +   ISP+    ++  L Q  S      +L+   V   L      + G  
Sbjct: 33  TVPPPSSPPFKCS-ISPLTISATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQ 91

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
            +A  + R + +P+  + + M+  Y+      + V ++  +       D +TFPF+LK  
Sbjct: 92  VHAHMLLRGL-QPTALVGSKMVAFYASSGDIDSSVSVFNGI------GDYFTFPFVLKSS 144

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
              ++V  GK +H  +L+ G    ++V  +LI  Y  CGE++ A  +FD     DV +WN
Sbjct: 145 VELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWN 204

Query: 186 AMFSGYKRVKQFD-------------------------------ETRKLFGEM--ERKGV 212
           A+ +GY +    D                               +   LF EM  E  GV
Sbjct: 205 ALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGV 264

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P  VTI+ VL ACA+L  L+ G++ H       +  N  +  ALT MYA CG +  A  
Sbjct: 265 RPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARN 324

Query: 273 IFG--NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            F   N   K++I+W  ++T Y + G                                  
Sbjct: 325 CFDKLNRNEKNLIAWNTMITAYASYGH-------------------------------GL 353

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-----EWVKTYIDKNKVKNDIFV 385
           +A++ FREM  + I+PD+ T   +L+ C++ G +++G         TY    +V++   V
Sbjct: 354 QAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACV 413

Query: 386 GNALIDMYCKCGDVEKAQRVFREM 409
                D+  + G + +A ++  EM
Sbjct: 414 A----DLLGRAGRLAEASKLVGEM 433


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/589 (39%), Positives = 346/589 (58%), Gaps = 22/589 (3%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY-KR 193
           K++H  +L  G     +  + L++T         A  IF+      +  +N + S     
Sbjct: 22  KQVHAQMLTTGLSFQTYYLSHLLNTSSKFAST-YAFTIFNHIPNPTLFLYNTLISSLTHH 80

Query: 194 VKQFDETRKLFGE-MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP-NL 251
             Q      L+   +  K + P S T   +  ACA    L  G   H +V +    P + 
Sbjct: 81  SDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLHAHVLKFLQPPYDP 140

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            ++N+L + YA  G++  +  +F  I   D+ +W  ++  Y    Q      Y     + 
Sbjct: 141 FVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAY---AQSASHVSYSTSFEDA 197

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D  L               EAL LF +MQ S I+P+E T+V++++AC+NLGAL  G W  
Sbjct: 198 DMSL---------------EALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAH 242

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            Y+ +N +K + FVG AL+DMY KCG +  A ++F E+  +D F + AMI G A++GHG+
Sbjct: 243 GYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGN 302

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L+++  M    ++PD  T V  + AC+H G+V+EG E F  M   HG+EP   HYGC+
Sbjct: 303 QALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCL 362

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           +DLLGRAG L EA E +++MPMKPN+I+W +LLGA ++H + EM E A K ++EL+P+  
Sbjct: 363 IDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETS 422

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL N+YA+  RW++ + +R ++ D G+ K PG S++E+NG +HEF+ GDK+HP +K
Sbjct: 423 GNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSK 482

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           EIY K+ E+   L   G+ P  SEV  DV EEDKE  +  HSE+LA+AF LI+S   + I
Sbjct: 483 EIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPI 542

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI+KNLR+C DCH + KL+S  Y R++IVRD+ RFHHFK GSCSC DYW
Sbjct: 543 RIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 208/439 (47%), Gaps = 61/439 (13%)

Query: 13  LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           L    P++  ++ C +++ LKQ+H+Q +  GL       + L+    S K    YA  +F
Sbjct: 2   LNLNHPILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLN--TSSKFASTYAFTIF 59

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-----SDVRPDNYTFPFLLKGFTR 127
             IP P++ L+NT+I   S +  H + + +   +         ++P+++TFP L K    
Sbjct: 60  NHIPNPTLFLYNTLI---SSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACAS 116

Query: 128 DIAVEFGKELHCHVLKF---GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
              ++ G  LH HVLKF    +D   FVQN+L++ Y   G++ ++R +FD   + D+ TW
Sbjct: 117 HPWLQHGPPLHAHVLKFLQPPYDP--FVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATW 174

Query: 185 NAMFSGYKRVKQ-------FD------ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           N M + Y +          F+      E   LF +M+   + P  VT+V ++SAC+ L  
Sbjct: 175 NTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGA 234

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           L  G  AH YV    +  N  +  AL DMY+ CG +  A ++F  + ++D   + A++ G
Sbjct: 235 LSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGG 294

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           +   G  +                               +AL L+R M+  ++ PD  TI
Sbjct: 295 FAVHGHGN-------------------------------QALELYRNMKLEDLVPDGATI 323

Query: 352 VSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM- 409
           V  + AC++ G +E G E  ++    + ++  +     LID+  + G +++A+   ++M 
Sbjct: 324 VVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMP 383

Query: 410 LRKDKFTWTAMIVGLAING 428
           ++ +   W +++    ++G
Sbjct: 384 MKPNAILWRSLLGAAKLHG 402



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 149/343 (43%), Gaps = 26/343 (7%)

Query: 21  SPIETCESMHQLKQ---IHSQTIK-LGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           S  + C S   L+    +H+  +K L    +P VQN L+ F  ++ G +  +  +F +I 
Sbjct: 109 SLFKACASHPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFY-AKYGKLCVSRYLFDQIS 167

Query: 77  RPSVCLWNTMIKGYSRIDSHKN-------------GVLIYLDMLKSDVRPDNYTFPFLLK 123
            P +  WNTM+  Y++  SH +              + ++ DM  S ++P+  T   L+ 
Sbjct: 168 EPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALIS 227

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
             +   A+  G   H +VL+     + FV  AL+  Y  CG +++A  +FD     D   
Sbjct: 228 ACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFC 287

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           +NAM  G+      ++  +L+  M+ + ++P   TIV+ + AC+    ++ G      +K
Sbjct: 288 YNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMK 347

Query: 244 ECK-IVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMA 301
               + P L     L D+    G +  A E   ++  K + I W +++      G ++M 
Sbjct: 348 GVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMG 407

Query: 302 RQYFDQM----PER--DYVLWTAMIDGYLRVNRFREALTLFRE 338
                 +    PE   +YVL + M     R N  +    L ++
Sbjct: 408 EAALKHLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKD 450


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/615 (37%), Positives = 351/615 (57%), Gaps = 65/615 (10%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  ++  GF     + + LI+ Y L  + D+AR +FD +     + WN+M   Y R K
Sbjct: 70  QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 128

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           Q++E  +++  M  KG L                +D+ +G                    
Sbjct: 129 QYNEALEMYYCMVEKGGLE---------------RDVFIGA------------------- 154

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
            L DMY+  G++  A E+F  +  +DV++W A++ G        +AR+ FDQM ++D V 
Sbjct: 155 GLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVS 214

Query: 316 WTAMIDGYLRVNRF------------------------------REALTLFREMQTSNIR 345
           W  M+ GY     F                              +EA++ F +M+  N  
Sbjct: 215 WGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFH 274

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           P+  T VS+L A A L A   G      I +    ++  VGN+LIDMY KCG ++ ++++
Sbjct: 275 PNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKL 334

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F EM  KD  +W AM+ G A++GHGD+++ +FS M  + +  D V++V VLSAC H G+V
Sbjct: 335 FNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLV 394

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           +EGR+ F  M+ ++ I+P+  HY CMVDLLGRAG  +E L  IK MP++P++ VWGALLG
Sbjct: 395 EEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLG 454

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           +CR+H + ++ E+A   +++L+P N A +V+L +IYA   RW +  + R  + D G+KKT
Sbjct: 455 SCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKT 514

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
           PGCS +E+   VH F  GDKSHPQ + ++L  + +   ++ +GY+PD S V  +V EEDK
Sbjct: 515 PGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDK 574

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           E  +Y HSE+LA+ F L+++ PG TI+IVKNLR+C DCH   K +S +  R +IVRD TR
Sbjct: 575 EMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATR 634

Query: 706 FHHFKHGSCSCKDYW 720
           FHHF+ G CSC DYW
Sbjct: 635 FHHFEDGICSCNDYW 649



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 190/444 (42%), Gaps = 70/444 (15%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           ST T        + +C+ ++ L QIH+Q I  G   + ++ + +  +    K D+  A  
Sbjct: 47  STYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDL--ARS 104

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDI 129
           VF   P PS  LWN+MI+ Y+R   +   + +Y  M+ K  +  D +    L+  +++  
Sbjct: 105 VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMG 164

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            ++  +E+   + K      V   NA+I+      +  +AR +FD     D V+W  M +
Sbjct: 165 DLKRAREVFDKMPK----RDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMA 220

Query: 190 GYKRVKQFDETRKLFGEMERKGVL------------------------------PTSVTI 219
           GY     F E  +LF +M+   V                               P SVT 
Sbjct: 221 GYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTF 280

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
           V VL A A L     G   H  + +   + N ++ N+L DMYA CG++ ++ ++F  + +
Sbjct: 281 VSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDH 340

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           KD +SW A+++GY   G  D                                A+ LF  M
Sbjct: 341 KDTVSWNAMLSGYAVHGHGD-------------------------------RAIALFSLM 369

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           Q S ++ D  + VS+L+AC + G +E G  +  +  DK  +K D+     ++D+  + G 
Sbjct: 370 QESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGL 429

Query: 399 VEKAQRVFREM-LRKDKFTWTAMI 421
            ++     + M +  D   W A++
Sbjct: 430 FDETLGFIKVMPVEPDAGVWGALL 453



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 97/231 (41%), Gaps = 8/231 (3%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN +I  Y +    K  +  +  M   +  P++ TF  +L       A   G   H  ++
Sbjct: 245 WNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACII 304

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           + GF S+  V N+LI  Y  CG++D +  +F+     D V+WNAM SGY      D    
Sbjct: 305 QMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIA 364

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMY 261
           LF  M+   V   SV+ V VLSAC     ++ G++  H    +  I P+L     + D+ 
Sbjct: 365 LFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDL- 423

Query: 262 AACGEMGFALEIFGNIK----NKDVISWTAIVTGYINRGQVDMARQYFDQM 308
              G  G   E  G IK      D   W A++        V +     D +
Sbjct: 424 --LGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHL 472


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/688 (34%), Positives = 380/688 (55%), Gaps = 36/688 (5%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTF--CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +HS   KLG   N  V + L+     CS   D ++   VF  I R    +W  M+  YS 
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEH---VFNGIVRKDAVVWTAMVSCYSE 240

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            D  +N   ++  M  S  +P+ +    +LK      +V  GK +H   +K   D+   V
Sbjct: 241 NDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHV 300

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             AL+  Y  CG++  AR  F++   DDV+  + M S Y +  Q ++  +LF  + R  V
Sbjct: 301 GGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSV 360

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
           LP   ++  VL AC  +  LD GK+ H +  +     +L + NAL D YA C +M  +L+
Sbjct: 361 LPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLK 420

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           IF ++++ + +S                               W  ++ G+ +     EA
Sbjct: 421 IFSSLRDANEVS-------------------------------WNTIVVGFSQSGLGEEA 449

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L++F EMQ + +   + T  S+L ACA+  ++     +   I+K+   ND  +GN+LID 
Sbjct: 450 LSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDT 509

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG +  A +VF+ ++ +D  +W A+I G A++G    +L++F +M ++++  +++T+
Sbjct: 510 YAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITF 569

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           V +LS C+ TG+V+ G   F  M I HGI+P+  HY C+V LLGRAG LN+AL+ I ++P
Sbjct: 570 VALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIP 629

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
             P+++VW ALL +C +H++  +   +A++ILE++P +E  YVLL N+YAA    D    
Sbjct: 630 SAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVAL 689

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           LR+ + + G++K PG S +E+ G +H F  G   HP  + I   L+ +       GY+PD
Sbjct: 690 LRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPD 749

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
           I+ V  DV +E K R ++ HSE+LA+A+GL+ + PG  IRI+KNLR C+DCH    ++S 
Sbjct: 750 INVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISK 809

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  RE+IVRD  RFHHF+ G CSC DYW
Sbjct: 810 IVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 204/441 (46%), Gaps = 43/441 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K IH   IK    T P V   L+    ++ GD+K A   F  IP   V L + MI  Y++
Sbjct: 283 KGIHGCAIKTLNDTEPHVGGALLDMY-AKCGDIKDARLAFEMIPYDDVILLSFMISRYAQ 341

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            + ++    ++L +++S V P+ Y+   +L+  T  + ++FGK++H H +K G +S +FV
Sbjct: 342 SNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFV 401

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL+  Y  C ++D +  IF      + V+WN +  G+ +    +E   +F EM+   +
Sbjct: 402 GNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQM 461

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
             T VT   VL ACA    +    + H  +++     + ++ N+L D YA CG +  AL+
Sbjct: 462 PCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALK 521

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F ++  +D+ISW AI++GY   GQ                                 +A
Sbjct: 522 VFQHLMERDIISWNAIISGYALHGQA-------------------------------ADA 550

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NA 388
           L LF  M  SN+  ++ T V++L+ C++ G +  G    +  D  ++ + I         
Sbjct: 551 LELFDRMNKSNVESNDITFVALLSVCSSTGLVNHG---LSLFDSMRIDHGIKPSMEHYTC 607

Query: 389 LIDMYCKCGDVEKAQRVFREMLRK-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           ++ +  + G +  A +   ++        W A++    I  H + +L  FS      I P
Sbjct: 608 IVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII--HKNVALGRFSAEKILEIEP 665

Query: 448 -DEVTYVGVLSACTHTGMVDE 467
            DE TYV + +     G +D+
Sbjct: 666 QDETTYVLLSNMYAAAGSLDQ 686



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 5/240 (2%)

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
           G +   D+     ++  Y   G +  AR+ FD+MPER+ V +  ++  + +   F  A  
Sbjct: 89  GGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAA 148

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LFR ++      ++F + ++L     + A  L   V +   K    ++ FVG+ LID Y 
Sbjct: 149 LFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYS 208

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
            C  V  A+ VF  ++RKD   WTAM+   + N   + +  +FS+M  +   P+      
Sbjct: 209 LCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTS 268

Query: 455 VLSA--CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           VL A  C  + ++ +G    A  T+ +  EP+    G ++D+  + G + +A    + +P
Sbjct: 269 VLKAAVCLPSVVLGKGIHGCAIKTL-NDTEPHVG--GALLDMYAKCGDIKDARLAFEMIP 325


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/557 (38%), Positives = 344/557 (61%)

Query: 29   MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
            M  +K++H+  +  GL       +K++      + D+  A KVF++I  P+  LWNT+++
Sbjct: 854  MEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLR 913

Query: 89   GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
            G ++ D+ K+ ++ Y    +  ++PDN TFPF+LK   +  A + G+++H HV+K GF  
Sbjct: 914  GLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLL 973

Query: 149  SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
             +FV N+LI  Y  CG +  AR +F+     DVV+WN++  GY +  +  E   LF  M+
Sbjct: 974  DIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQ 1033

Query: 209  RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
             + V    VT+V V+SAC  L D  +     RY++   I  ++ L N L D Y   G++ 
Sbjct: 1034 AEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQ 1093

Query: 269  FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
             A ++F  +K+K+ ++  A++T Y   G +  A++ FDQ+P +D + W++MI  Y + + 
Sbjct: 1094 SAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASH 1153

Query: 329  FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
            F ++L LFR+MQ + ++PD   I S+L+ACA+LGAL+LG+W+  Y+ +N +K D  + N+
Sbjct: 1154 FSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENS 1213

Query: 389  LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
            LIDM+ KCG V++A +VF +M  KD  +W ++I+GLA NG  D++LD+F  ML     P+
Sbjct: 1214 LIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPN 1273

Query: 449  EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
            EVT++GVL AC +  +V+EG ++F  M   H +EP   HYGC+VD+L RAG L +A+  I
Sbjct: 1274 EVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFI 1333

Query: 509  KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
              MP+ P+ +VW  LLGACR H +  +AEMA K++ ELDP N A  +LL NIYA+ +RW 
Sbjct: 1334 SEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELDPGNSADSMLLSNIYASADRWS 1393

Query: 569  NFRELRQMILDRGIKKT 585
            +   +R+   D  + ++
Sbjct: 1394 DAMNVRRWTADNAVGES 1410



 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 145/417 (34%), Positives = 238/417 (57%), Gaps = 6/417 (1%)

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           A  +FD S       W A    Y       E   LF +  R+ +   +     VL ACA 
Sbjct: 437 ALKVFDQS----PAPWRAFLKAYSHGPFPLEALHLF-KHARQHLADDTFVFTFVLKACAG 491

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           L     G + H  V +     +  +  AL ++Y     +  A ++F  +  K+V+SW  +
Sbjct: 492 LGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVM 551

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           +TG+   G+V+ AR  FDQMP R+ V WT +IDGY R   + EALTL R M    I P E
Sbjct: 552 ITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSE 611

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T+++++ A +NLG + +GE +  Y +K  + +D  VGN+LID+Y K G V+ + +VF E
Sbjct: 612 ITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDE 671

Query: 409 ML-RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
           ML R++  +WT++I G A++G   ++L++F++M RA I P+ +T++ V++AC+H G+V++
Sbjct: 672 MLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQ 731

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
           G  +F  M  ++ I+P   H+GC++D+LGRAG L EA ++I+ +PM+ N  VW  LLG C
Sbjct: 732 GLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCC 791

Query: 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
             + +  M E A K I +L+ ++   + +L N+     R+ +  + R+++  R I K
Sbjct: 792 SKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVK 848



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/480 (23%), Positives = 204/480 (42%), Gaps = 85/480 (17%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           ++  PP++ T  + L +P+           +  Q +     T P           S    
Sbjct: 380 TACPPPASATSASGLWAPVSRLCPRRSSSGLRHQALSYSS-TAPVPATAR-----SSTPP 433

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK---SDVRPDNYTFPFL 121
            + A KVF + P P    W   +K YS    H    L  L + K     +  D + F F+
Sbjct: 434 SRTALKVFDQSPAP----WRAFLKAYS----HGPFPLEALHLFKHARQHLADDTFVFTFV 485

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY----CLC-------------- 163
           LK          G +LH  V++ GF+   +V  ALI+ Y    CL               
Sbjct: 486 LKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNV 545

Query: 164 -------------GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
                        GEV+ AR +FD     +VV+W  +  GY R   + E   L   M   
Sbjct: 546 VSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAG 605

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G+ P+ +T++ V+ A + L  + +G+  + Y ++  I+ +  + N+L D+YA  G +  +
Sbjct: 606 GISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNS 665

Query: 271 LEIFGN-IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           L++F   +  ++++SWT+I++G+   G                           L V   
Sbjct: 666 LKVFDEMLDRRNLVSWTSIISGFAMHG---------------------------LSV--- 695

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNA 388
            EAL LF EM+ + I+P+  T +S++ AC++ G +E G  + K+ + +  +  +I     
Sbjct: 696 -EALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGC 754

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN----GHGDKSLDMFSQMLRAS 444
           +IDM  + G + +A+++   +  +   T   +++G          G++++ M S + R S
Sbjct: 755 IIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERES 814



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 106/474 (22%), Positives = 204/474 (43%), Gaps = 19/474 (4%)

Query: 63   GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
            G+++YA  +F ++P  +V  W  +I GY+R   +   + +   M+   + P   T   ++
Sbjct: 559  GEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVI 618

Query: 123  KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDV 181
               +    +  G+ L+ +  K G  S   V N+LI  Y   G V  +  +FD +  + ++
Sbjct: 619  PAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNL 678

Query: 182  VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR- 240
            V+W ++ SG+       E  +LF EM R G+ P  +T + V++AC+    ++ G    + 
Sbjct: 679  VSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKS 738

Query: 241  YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVD 299
             V E  I P +     + DM    G +  A +I   +  + +V  W  ++      G+V 
Sbjct: 739  MVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVA 798

Query: 300  MARQYFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
            M  +    +   ER+     A++   L        L  F + + +    D+  IV +  A
Sbjct: 799  MGERAIKMISDLERESGGDFAVLSNVL------TELGRFSDAEQARKLLDQRKIVKLQEA 852

Query: 358  CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC-KCGDVEKAQRVFREMLRKDKFT 416
                  +E  + +  ++  + + N  +  + +I +Y     D+  A +VF+++     F 
Sbjct: 853  -----VMEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFL 907

Query: 417  WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
            W  ++ GLA +     ++  + +     + PD +T+  VL AC  T    EG E   +  
Sbjct: 908  WNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEG-EQMHNHV 966

Query: 477  IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            I+ G   +      ++ L    G L  A  V   M +K + + W +L+G    H
Sbjct: 967  IKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVK-DVVSWNSLIGGYSQH 1019


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/671 (37%), Positives = 374/671 (55%), Gaps = 49/671 (7%)

Query: 52  NKLVTFCCSEKGDMKYACKVFRKIP-RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD 110
           N L+      +  +  A      IP  PSV  + ++++GY R     + + ++  M + +
Sbjct: 83  NALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERN 142

Query: 111 VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170
               + T+  LL GF     V   ++L   +     D  V  + A++S YC  G +  AR
Sbjct: 143 ----HVTYTVLLGGFLDAGRVNEARKLFDEMP----DKDVVARTAMLSGYCQAGRITEAR 194

Query: 171 GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK 230
            +FD   K +VV+W AM SGY +  +    RKLF  M  +                    
Sbjct: 195 ALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR-------------------- 234

Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
                              N +   A+   Y   G +  A ++F  + +  V +  A++ 
Sbjct: 235 -------------------NEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMV 275

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
           G+   G VD A+  F++M  RD   W+AMI  Y +     EAL+ FREM    IRP+  +
Sbjct: 276 GFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTS 335

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
            +SILT CA L   + G  +   + +     D+F  +ALI MY KCG+++KA+RVF    
Sbjct: 336 FISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFE 395

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            KD   W +MI G A +G G+++L +F  +  A + PD +TY+GVL+AC++TG V EGRE
Sbjct: 396 PKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGRE 455

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            F  M +   I    AHY CMVDLLGRAG ++EAL++I NMP++P++I+WGAL+GACR+H
Sbjct: 456 IFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMH 515

Query: 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590
           ++AE+AE+AAK++LEL+P +   YVLL +IY +  RW++  ++R+ I  R + K+PGCS 
Sbjct: 516 KNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSW 575

Query: 591 IEMNGVVHEFVAGDK-SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAV 649
           IE N +VH F +GD  SHP+   I   L+E+   L   GY  D S V  DV EE K +++
Sbjct: 576 IEYNKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQSL 635

Query: 650 YQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHF 709
             HSE+ A+A+GL+    G+ IR++KNLR+C DCH   KL++ +  RE+I+RD  RFHHF
Sbjct: 636 RYHSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHF 695

Query: 710 KHGSCSCKDYW 720
           K G CSC+DYW
Sbjct: 696 KDGLCSCRDYW 706



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 106/466 (22%), Positives = 203/466 (43%), Gaps = 45/466 (9%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           +V   NA I+     G ++ AR  FD        ++NA+ +GY R    D    LF  M 
Sbjct: 16  AVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMP 75

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
            + +   +  I  +      L D      A   +    + P+++   +L   Y   G + 
Sbjct: 76  SRDLGSYNALIAGLSLRRHTLPD------AAAALASIPLPPSVVSFTSLLRGYVRHGLLA 129

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A+ +F  +  ++ +++T ++ G+++ G+V+ AR+ FD+MP++D V  TAM+ GY +  R
Sbjct: 130 DAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGR 189

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-------------EWVKT--- 372
             EA  LF EM   N+     +  ++++  A  G + L               W      
Sbjct: 190 ITEARALFDEMPKRNV----VSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVG 245

Query: 373 YIDKNKVKN--DIFVG---------NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
           YI    V++  D+F           NA++  + + G V+ A+ +F  M  +D  TW+AMI
Sbjct: 246 YIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMI 305

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
                N    ++L  F +ML   I P+  +++ +L+ C      D GRE  A M ++   
Sbjct: 306 KVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAM-LRCSF 364

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE--MAEMA 539
           + +      ++ +  + G+L++A  V  NM    + ++W +++     H   E  +    
Sbjct: 365 DTDVFAVSALITMYIKCGNLDKAKRVF-NMFEPKDVVMWNSMITGYAQHGLGEEALGIFD 423

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
             ++  + PD     +    +  AC+     +E R++    G+  +
Sbjct: 424 DLRLARMAPDG----ITYIGVLTACSYTGKVKEGREIFNSMGMNSS 465



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 144/394 (36%), Gaps = 79/394 (20%)

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
            P ++  NA        G +  A   F  +  +   S+ A++ GY      D A   F +
Sbjct: 14  APAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHR 73

Query: 308 MPERDY---------------------------------VLWTAMIDGYLRVNRFREALT 334
           MP RD                                  V +T+++ GY+R     +A+ 
Sbjct: 74  MPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIR 133

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LF +M      P+   +   +     L A  + E  K +        D+    A++  YC
Sbjct: 134 LFHQM------PERNHVTYTVLLGGFLDAGRVNEARKLF--DEMPDKDVVARTAMLSGYC 185

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD--EVTY 452
           + G + +A+ +F EM +++  +WTAMI G A NG    +  +F       ++PD  EV++
Sbjct: 186 QAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLF------EVMPDRNEVSW 239

Query: 453 VGVLSACTHTGMVDEGREYFADMTI--------------QHGI------------EPNEA 486
             +L      G V++  + F  M                QHG+              ++ 
Sbjct: 240 TAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDG 299

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNM---PMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
            +  M+ +  +   L EAL   + M    ++PN   + ++L  C     A+        +
Sbjct: 300 TWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAM 359

Query: 544 LELDPDNEAVYV-LLCNIYAACNRWDNFRELRQM 576
           L    D +   V  L  +Y  C   D  + +  M
Sbjct: 360 LRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNM 393



 Score = 45.8 bits (107), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 17  TPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           T  IS +  C ++      +++H+  ++    T+    + L+T    + G++  A +VF 
Sbjct: 334 TSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYI-KCGNLDKAKRVFN 392

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
                 V +WN+MI GY++    +  + I+ D+  + + PD  T+  +L   +    V+ 
Sbjct: 393 MFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKE 452

Query: 134 GKELHCHVLKFGFDSSVFVQNA----LISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMF 188
           G+E+       G +SS+ +  A    ++      G VD A  +  ++  + D + W A+ 
Sbjct: 453 GREIFN---SMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALM 509

Query: 189 SG 190
             
Sbjct: 510 GA 511


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/508 (44%), Positives = 315/508 (62%), Gaps = 30/508 (5%)

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P + T   +L ACA+L  L  G+  H    +  +V  + ++N+L  +Y ACG    A  +
Sbjct: 120 PDTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRV 179

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  I                               PER+ V W ++++G+    R  E L
Sbjct: 180 FDEIPP-----------------------------PERNLVSWNSVLNGFAANGRPNEVL 210

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
           T+FREM      PD FT+VS+LTACA +G L LG  V  ++ K  +  +   GNALID+Y
Sbjct: 211 TVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLY 270

Query: 394 CKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
            KCG V+ A+++F EM + +   +WT++IVGLA+NG G  +L +FS M R  ++P E+T 
Sbjct: 271 AKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITM 330

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           VGVL AC+H G+VD+G  YF  M  ++GI P   H GCMVDLLGRAG + EA   I  MP
Sbjct: 331 VGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMP 390

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
           ++PN++VW  LLGAC +H+  E+ E A  +++ELDP +   YVLL N+YA   RW +   
Sbjct: 391 LEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHV 450

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           LR+ ++  G++K PG S++E+   V+EFV GD+SHP+T +IY  L ++   L+  GY+P 
Sbjct: 451 LRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPH 510

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            S V  D+ +E+KE A+  HSE+LA+AF L+ S PG  IRIVKNLR+C DCH   KL+S 
Sbjct: 511 TSNVLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLISK 570

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           VYDRE+IVRD++RFHHFK G+CSCKDYW
Sbjct: 571 VYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 194/414 (46%), Gaps = 52/414 (12%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPT----VQNKLVTFCCSEKGDMKYACKVFRKI-PRPSVCL 82
           S+   KQ+H++ ++      P+     ++ L      +   ++YA  V   + P P    
Sbjct: 33  SLATAKQLHARALRAAPGVTPSHPLLAKHLLFHLAALKAPPLRYAVAVLSGLLPSPDPFS 92

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
            NT+++ ++     +  + ++   L     PD +T+P LL+   R +A+ +G+ LH    
Sbjct: 93  LNTVLRIFASSARPRVALALHRRHLAP---PDTHTYPPLLQACARLLALRYGEGLHAEAC 149

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFD--VSYKDDVVTWNAMFSGYKRVKQFDET 200
           K G  S VFV+N+L+  Y  CG  + A  +FD     + ++V+WN++ +G+    + +E 
Sbjct: 150 KNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEV 209

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             +F EM      P   T+V VL+ACA++  L +G+R H +V +  +V N    NAL D+
Sbjct: 210 LTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDL 269

Query: 261 YAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           YA CG +  A ++FG +   + V+SWT+++ G                            
Sbjct: 270 YAKCGGVDDARKMFGEMGVGRTVVSWTSLIVG---------------------------- 301

Query: 320 IDGYLRVNRF-REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
               L VN F  +AL LF  M+   + P E T+V +L AC++ G ++ G     Y D+ K
Sbjct: 302 ----LAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDG---FRYFDQMK 354

Query: 379 VKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
            +  I         ++D+  + G VE+A      M L  +   W  ++   A++
Sbjct: 355 AEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMH 408



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 161/353 (45%), Gaps = 22/353 (6%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF--CCSEKGD 64
           ++PP T T   PL+       ++   + +H++  K GL++   V+N LV     C   G 
Sbjct: 117 LAPPDTHTY-PPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGAC---GL 172

Query: 65  MKYACKVFRKIPRPSVCL--WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
            + A +VF +IP P   L  WN+++ G++        + ++ +ML+ +  PD +T   +L
Sbjct: 173 FESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVL 232

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDV 181
                   +  G+ +H  V K G   +    NALI  Y  CG VD AR +F ++     V
Sbjct: 233 TACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTV 292

Query: 182 VTWNAMFSGYKRVKQFD-ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           V+W ++  G   V  F  +  +LF  MER+ ++PT +T+V VL AC+    +D G R   
Sbjct: 293 VSWTSLIVGLA-VNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFD 351

Query: 241 YVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQV 298
            +K E  I P +     + D+    G +  A      +    + + W  ++       ++
Sbjct: 352 QMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKL 411

Query: 299 DMARQYFDQMPE------RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           ++    + ++ E       DYVL + +  G   V R+ +   L + M T  +R
Sbjct: 412 EIGEAAWARLVELDPGHSGDYVLLSNLYAG---VGRWADVHVLRKTMVTHGVR 461



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 138/302 (45%), Gaps = 26/302 (8%)

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           +P  D      ++  +    R R AL L R        PD  T   +L ACA L AL  G
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALHRRHLAP---PDTHTYPPLLQACARLLALRYG 141

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLA 425
           E +     KN + + +FV N+L+ +Y  CG  E A RVF E+   ++   +W +++ G A
Sbjct: 142 EGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFA 201

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            NG  ++ L +F +ML     PD  T V VL+AC   G++  GR        + G+  N 
Sbjct: 202 ANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHV-FVAKVGLVGN- 259

Query: 486 AHYG-CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
           AH G  ++DL  + G +++A ++   M +    + W +L+    V+       M A Q+ 
Sbjct: 260 AHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFG----MDALQLF 315

Query: 545 ELDPDNE--AVYVLLCNIYAACNRW----DNFRELRQMILDRGIKKTP-----GCSMIEM 593
            +    +     + +  +  AC+      D FR   QM  + GI  TP     GC M+++
Sbjct: 316 SMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGI--TPRIEHLGC-MVDL 372

Query: 594 NG 595
            G
Sbjct: 373 LG 374


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/691 (35%), Positives = 374/691 (54%), Gaps = 40/691 (5%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           +I S  ++ G+  N  V + +++F   + G +  A +VF  +P   V  WN++I GY + 
Sbjct: 151 EIISSAVEKGMEKNRFVGSSMISFLV-KFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQA 209

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
                   ++ +M  S ++P   T   L++       ++ GK +H +VL  G  + + V 
Sbjct: 210 GCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVL 269

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
            + +  Y   G+++ AR +F      ++V+WNAM SG  R     E+  LF  + R    
Sbjct: 270 TSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGG 329

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP---NLILENALTDMYAACGEMGFA 270
               TIV +L  C++   L  GK  H     C I     NLIL  A+ D+Y+ CG +   
Sbjct: 330 FDLTTIVSLLQGCSQTASLATGKILH----GCAIRSFESNLILSTAIVDLYSKCGSL--- 382

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
                                         A   F++M +R+ + WTAM+ G  +     
Sbjct: 383 ----------------------------KQATFVFNRMKDRNVITWTAMLVGLAQNGHAE 414

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           +AL LF +MQ   I  +  T VS++ +CA+LG+L+ G  +  ++ +     DI    AL+
Sbjct: 415 DALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALV 474

Query: 391 DMYCKCGDVEKAQRVFRE-MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           DMY KCG +  A+R+F    + KD   W +MI G  ++GHG +++ ++ +M+   + P++
Sbjct: 475 DMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQ 534

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
            T++ +LSAC+H+ +V++G   F  M   H I P E HY C+VDLL RAG   EA  +I+
Sbjct: 535 TTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIE 594

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
            MP +P + V  ALL  CR H++  +    + ++L LD  N  +Y++L NIYA   RWD 
Sbjct: 595 KMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDK 654

Query: 570 FRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGY 629
              +R ++ +RG+KKTPG S++E    VH F AGD SHP  +EIY  L+ + S ++  GY
Sbjct: 655 VDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGY 714

Query: 630 MPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKL 689
           +PD S V  DV EE K R ++ HSE+LA+AFGL+++  G  IRI KNLR+C DCH + K 
Sbjct: 715 VPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKY 774

Query: 690 VSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +S +  RE+IVRD  RFHHF +G CSC DYW
Sbjct: 775 ISKIVKREIIVRDANRFHHFSNGECSCGDYW 805


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/515 (43%), Positives = 321/515 (62%), Gaps = 34/515 (6%)

Query: 209  RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
            R+  LP + T   ++ ACA+L  L  G+  H    +   V  + ++N+L  +Y ACG   
Sbjct: 797  RRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLF- 855

Query: 269  FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP--ERDYVLWTAMIDGYLRV 326
                                          + A + FD+MP   R+ V W +M++ +   
Sbjct: 856  ------------------------------ESAHKVFDEMPVRGRNLVSWNSMLNSFAAN 885

Query: 327  NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
             R  E LT+F EM   +  PD FTIVS+LTACA  GAL LG  V  Y++K  +  +  V 
Sbjct: 886  GRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVS 945

Query: 387  NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            NALID+Y KCG V  A+R+F EM L +   +WT++IVGLA NG G ++L++FS M R  +
Sbjct: 946  NALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKL 1005

Query: 446  IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
            +P E+T VGVL AC+H G+VD+G  YF  M   +GI P   H GCMVDLLGRAG + EA 
Sbjct: 1006 VPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAY 1065

Query: 506  EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
            + I  MP++PN++VW  LLG+C +H+  E+ ++A ++++ELDP +   YVLL N+YAA  
Sbjct: 1066 DYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVG 1125

Query: 566  RWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625
             W +   LR+ ++   ++K PG S++E+   V+EFV GD+SHP++++IY  L E+   L+
Sbjct: 1126 MWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLR 1185

Query: 626  FVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHR 685
              GY+P  S V  D+ EE+KE A+  HSE+LA+AF L+ S PG+ IRI+KNLRMC DCH 
Sbjct: 1186 REGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHV 1245

Query: 686  MAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
               L+S VYDRE+IVRD++RFHHF+ G+CSCKDYW
Sbjct: 1246 AFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 155/324 (47%), Gaps = 44/324 (13%)

Query: 113  PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
            PD +T+P L++   R +A+  G+ LH    K GF + VFVQN+L+  Y  CG  + A  +
Sbjct: 802  PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 861

Query: 173  FD--VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK 230
            FD       ++V+WN+M + +    + +E   +F EM      P   TIV VL+ACA+  
Sbjct: 862  FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFG 921

Query: 231  DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIV 289
             L +G+R H YV++  +V N  + NAL D+YA CG +  A  IF  +   + V+SWT+++
Sbjct: 922  ALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLI 981

Query: 290  TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFREMQTSNIRPDE 348
             G                                L  N F +EAL LF  M+   + P E
Sbjct: 982  VG--------------------------------LAANGFGKEALELFSLMEREKLVPTE 1009

Query: 349  FTIVSILTACANLGALELGEWVKTYIDKNK----VKNDIFVGNALIDMYCKCGDVEKAQR 404
             T+V +L AC++ G ++ G     Y D+ K    +   I     ++D+  + G VE+A  
Sbjct: 1010 ITMVGVLYACSHCGLVDDG---FRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYD 1066

Query: 405  VFREM-LRKDKFTWTAMIVGLAIN 427
                M L  +   W  ++   A++
Sbjct: 1067 YIITMPLEPNAVVWRTLLGSCAMH 1090



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 143/301 (47%), Gaps = 15/301 (4%)

Query: 23   IETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTF--CCSEKGDMKYACKVFRKIPR 77
            I+ C  +  L++   +H++  K G +T   VQN LV     C   G  + A KVF ++P 
Sbjct: 811  IQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGAC---GLFESAHKVFDEMPV 867

Query: 78   PSVCL--WNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
                L  WN+M+  ++  +   N VL ++ +ML  D  PD +T   +L       A+  G
Sbjct: 868  RGRNLVSWNSMLNSFAA-NGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALG 926

Query: 135  KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKR 193
            + +H +V K G   +  V NALI  Y  CG V+ AR IF ++     VV+W ++  G   
Sbjct: 927  RRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAA 986

Query: 194  VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLI 252
                 E  +LF  MER+ ++PT +T+V VL AC+    +D G R    +KE   I P + 
Sbjct: 987  NGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIE 1046

Query: 253  LENALTDMYAACGEMGFALE-IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
                + D+    G +  A + I       + + W  ++       ++++ +  ++++ E 
Sbjct: 1047 HLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVEL 1106

Query: 312  D 312
            D
Sbjct: 1107 D 1107


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/714 (36%), Positives = 396/714 (55%), Gaps = 35/714 (4%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV---CLWNTMIKGY 90
            +H+     G   N  V N LV+      G  + A +VF ++    V     WN+++  Y
Sbjct: 147 SVHAVVFASGFEWNVFVGNGLVSMY-GRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 205

Query: 91  SRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
            +       + ++  M +   +RPD  +   +L       A   GK++H + L+ G    
Sbjct: 206 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFED 265

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           VFV NA++  Y  CG ++ A  +F+     DVV+WNAM +GY ++ +FD+   LF ++  
Sbjct: 266 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIRE 325

Query: 210 KGVLPTSVTIVLVLSACAK----LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           + +    VT   V++  A+     + LDV     R ++ C   PN++    L  + + C 
Sbjct: 326 EKIELNVVTWSAVIAGYAQRGLGFEALDV----FRQMRLCGSEPNVV---TLVSLLSGCA 378

Query: 266 EMG--------------FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
             G              + L +  N    D++   A++  Y        AR  FD +P +
Sbjct: 379 LAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPK 438

Query: 312 D--YVLWTAMIDGYLRVNRFREALTLFREM-QTSN-IRPDEFTIVSILTACANLGALELG 367
           D   V WT +I G  +     EAL LF +M Q  N + P+ FTI   L ACA LGAL  G
Sbjct: 439 DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 498

Query: 368 EWVKTYIDKNKVKND-IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
             +  Y+ +N+ ++  +FV N LIDMY K GDV+ A+ VF  M +++  +WT+++ G  +
Sbjct: 499 RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGM 558

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G+++L +F +M +  ++PD VT+V VL AC+H+GMVD+G  YF  M    G+ P   
Sbjct: 559 HGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAE 618

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY CMVDLL RAG L+EA+E+I+ MPMKP   VW ALL ACRV+ + E+ E AA Q+LEL
Sbjct: 619 HYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLEL 678

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           +  N+  Y LL NIYA    W +   +R ++ + GIKK PGCS ++       F AGD S
Sbjct: 679 ESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWS 738

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           HP +++IY  L ++   +K +GY+PD      DV +E+K   + +HSEKLA+A+G++++ 
Sbjct: 739 HPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTA 798

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           PG  IRI KNLR C DCH     +S++ + E+IVRD +RFHHFK+GSCSC+ YW
Sbjct: 799 PGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 187/576 (32%), Positives = 294/576 (51%), Gaps = 39/576 (6%)

Query: 11  STLTQETPLISPI-ETCESMHQLKQIHSQTIKLGLLTNPT-VQNKLVTFCCSEKGDMKYA 68
           ST +  T L S +   C+S+   + IH Q +  GL  +PT + +  +TF    K     A
Sbjct: 23  STASSTTDLTSTLFHQCKSLASAELIHQQLLVQGLPHDPTHIISMYLTFNSPAK-----A 77

Query: 69  CKVFRKIPRPS--VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
             V R++   S  V  WN +I+    +   ++ + +Y  M +   RPD+YTFPF+LK   
Sbjct: 78  LSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACG 137

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVT 183
              +   G  +H  V   GF+ +VFV N L+S Y  CG  + AR +FD   +    D+V+
Sbjct: 138 EIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVS 197

Query: 184 WNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           WN++ + Y +        K+F  M E  G+ P +V++V VL ACA +     GK+ H Y 
Sbjct: 198 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 257

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
               +  ++ + NA+ DMYA CG M  A ++F  +K KDV+SW A+VTGY   G+ D A 
Sbjct: 258 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDAL 317

Query: 303 QYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
             F+++ E     + V W+A+I GY +     EAL +FR+M+     P+  T+VS+L+ C
Sbjct: 318 GLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGC 377

Query: 359 ANLGALELG--------EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           A  G L  G        +W+   +D+N   +D+ V NALIDMY KC   + A+ +F  + 
Sbjct: 378 ALAGTLLHGKETHCHAIKWILN-LDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIP 436

Query: 411 RKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRAS--IIPDEVTYVGVLSACTHTGMVD 466
            KD+   TWT +I G A +G  +++L++FSQML+    ++P+  T    L AC   G + 
Sbjct: 437 PKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR 496

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            GR+  A +              C++D+  ++G ++ A  V  NM  + N + W +L+  
Sbjct: 497 FGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLMTG 555

Query: 527 CRVHRDAEMA-----EMAAKQILELDPDNEAVYVLL 557
             +H   E A     EM   Q + L PD     V+L
Sbjct: 556 YGMHGRGEEALQIFYEM---QKVGLVPDGVTFVVVL 588


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/469 (48%), Positives = 315/469 (67%), Gaps = 6/469 (1%)

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N++   +A  G++  A  +F  + +   ++WT++V G    G V  AR+ F++MP RD V
Sbjct: 79  NSMIHAHAMSGDVVSARRLFERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLV 138

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W AM+ G     R  EAL LFR M      P+  T++S L ACA  GALE G+W+  ++
Sbjct: 139 SWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFV 198

Query: 375 DKNKVKN--DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           ++ ++    D F+G AL+DMY KCG VE A  VF ++  ++  TW AMI GLA+NG+  K
Sbjct: 199 ERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAK 258

Query: 433 SLDMFSQM-LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           +LDMF +M L  +++PDEVT+VGVL AC+H G VD GRE+F  +  ++GI     HY CM
Sbjct: 259 ALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACM 318

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLL R+GHL EA ++I  MPMKP+++VW ALLG CR+H+D +MAE A   I E++    
Sbjct: 319 VDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHKDVKMAETA---ISEMEATCS 375

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             +VLL N+YAA  RW    ++R+ +  +GI+K PGCS IE+N  +HEFV+GDKSHP   
Sbjct: 376 GDHVLLSNLYAAVGRWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSHPSYN 435

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           +I+ KL E+++ ++  GY+ + +EVF DV EE+KE+A+  HSEKLA+AFGLI   P V I
Sbjct: 436 DIHAKLAEISARMQQQGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPPNVAI 495

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RIVKNLR C DCH+ AKLVS +Y  E++VRD+ RFHHF  G+CSC D+W
Sbjct: 496 RIVKNLRFCADCHKFAKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 133/275 (48%), Gaps = 36/275 (13%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
            ++++  C  G+V  AR +F+     D+V+WNAM SG    ++  E   LF  M  +G  
Sbjct: 110 TSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFA 169

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP--NLILENALTDMYAACGEMGFAL 271
           P   T++  L+ACA    L+ GK  H +V+  ++    +  L  AL DMYA CG +  AL
Sbjct: 170 PNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELAL 229

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           ++F  +++++  +W A++ G                            ++GY       +
Sbjct: 230 DVFTKLRSRNTCTWNAMINGL--------------------------AMNGY-----SAK 258

Query: 332 ALTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA-L 389
           AL +FR+M+    + PDE T V +L AC++ G +++G      I+K      I    A +
Sbjct: 259 ALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACM 318

Query: 390 IDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVG 423
           +D+  + G +++A ++   M ++ D   W A++ G
Sbjct: 319 VDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGG 353



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 137/312 (43%), Gaps = 24/312 (7%)

Query: 47  NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM 106
            P     +V   C   GD+  A ++F ++P   +  WN M+ G +        + ++  M
Sbjct: 105 TPVTWTSMVAGLC-RAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRM 163

Query: 107 LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV----LKFGFDSSVFVQNALISTYCL 162
           +     P+  T    L       A+E GK +H  V    L   +D   F+  AL+  Y  
Sbjct: 164 MAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDE--FLGTALLDMYAK 221

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYK----RVKQFDETRKLFGEMERKGVLPTSVT 218
           CG V++A  +F      +  TWNAM +G        K  D  RK+  E++R  V+P  VT
Sbjct: 222 CGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKM--ELDRT-VVPDEVT 278

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN--ALTDMYAACGEMGFALEIFGN 276
            V VL AC+    +DVG R H ++ E K    LILE+   + D+ A  G +  A +I   
Sbjct: 279 FVGVLLACSHGGFVDVG-REHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAG 337

Query: 277 IKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREA 332
           +  K D + W A++ G      V MA     +M      D+VL + +   Y  V R+   
Sbjct: 338 MPMKPDAVVWRALLGGCRLHKDVKMAETAISEMEATCSGDHVLLSNL---YAAVGRWSGV 394

Query: 333 LTLFREMQTSNI 344
             + R M++  I
Sbjct: 395 EDVRRTMRSKGI 406


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/660 (37%), Positives = 363/660 (55%), Gaps = 40/660 (6%)

Query: 63   GDMKYACKVFRKIPRPSVCL--WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
            G +  A  VF+++P PS  L  WN M+  Y++ D  K      ++ML+  V PD  +F  
Sbjct: 487  GSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTS 546

Query: 121  LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
            +L   +     +  + L   +L+ G+ S+  ++ ALIS +  C E++ AR +FD     D
Sbjct: 547  VL---SSCYCSQEAQVLRMCILESGYRSAC-LETALISMHGRCRELEQARSVFDEMDHGD 602

Query: 181  VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
            VV+W AM S     + F E   LF  M+ +GV+P   T+   L  C     L +GK  H 
Sbjct: 603  VVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHA 662

Query: 241  YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
             V E  +  ++ +ENAL +MY+ CG+   AL                             
Sbjct: 663  CVTEIGLEADIAVENALLNMYSNCGDWREAL----------------------------- 693

Query: 301  ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
               +F+ M  RD V W  M   Y +    +EA+ LFR MQ   ++PD+ T  + L     
Sbjct: 694  --SFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGG 751

Query: 361  LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
               +  G+       ++ + +D+ V   L+ +Y KCG +++A  +FR   +       A+
Sbjct: 752  SALVSDGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAI 811

Query: 421  IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
            I  LA +G  ++++ MF +M +  + PD  T V ++SAC H GMV+EG   F  M    G
Sbjct: 812  IGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFG 871

Query: 481  IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
            I P   HY C VDLLGRAG L  A ++I+ MP + N++VW +LLG C++  DAE+ E  A
Sbjct: 872  ISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCA 931

Query: 541  KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
            ++ILELDP N A +V+L NIY A  +W +    R+ +LD+ +K  PG S +E+   VHEF
Sbjct: 932  QRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEF 991

Query: 601  VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
            VAGD+SHPQT EIY+ LD++   ++  GY  D     LD  +E KE+A+  HSE++A+AF
Sbjct: 992  VAGDRSHPQTDEIYVVLDKLELLMRRAGYEADKG---LDAEDELKEKALGYHSERIAIAF 1048

Query: 661  GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            GLI++ P  T++IVKNLR+C DCH   K +SM+  RE+IVRD  RFHHF +G+CSCKD W
Sbjct: 1049 GLIATPPDTTLKIVKNLRVCGDCHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 138/607 (22%), Positives = 253/607 (41%), Gaps = 91/607 (14%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
            P+ +T     I+ +  C S+     +HS   + GL  +P   N L+     + GD + A
Sbjct: 230 APNVIT----FITALGACTSLRDGTWLHSLLHEAGLGFDPLAGNALINMY-GKCGDWEGA 284

Query: 69  CKVFRKIPRPS---VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             VF+ +       +  WN MI        H + + I+  +    +RP++ T   +L   
Sbjct: 285 YGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNAL 344

Query: 126 TRDIAVEFG--KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVV 182
                V+FG  ++ H  + + G+   V V NA+IS Y  CG    A  +F  + +K DV+
Sbjct: 345 AAS-GVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVI 403

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WN M    +  K F +    F  M   G+ P  V+ + +L+AC+  + LD G++ H  +
Sbjct: 404 SWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLI 463

Query: 243 --KECKIVPNLILENALTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVTGYINRGQV 298
             +    V + +    L  MY  CG +  A  +F    + ++ +++W  ++  Y    Q 
Sbjct: 464 LTRRRDYVESSV-ATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAY---AQN 519

Query: 299 DMARQYFDQMPE--------------------------------------RDYVLWTAMI 320
           D +++ F  + E                                      R   L TA+I
Sbjct: 520 DRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALI 579

Query: 321 DGYLRVNRFREALTLF-------------------------------REMQTSNIRPDEF 349
             + R     +A ++F                               R MQ   + PD+F
Sbjct: 580 SMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKF 639

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
           T+ + L  C +   L LG+ +   + +  ++ DI V NAL++MY  CGD  +A   F  M
Sbjct: 640 TLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETM 699

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
             +D  +W  M    A  G   +++ +F  M    + PD++T+   L+    + +V +G+
Sbjct: 700 KARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGK 759

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529
             F  +  + G++ + +    +V L  + G L+EA+ + +    +   ++  A++GA   
Sbjct: 760 -LFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRG-ACQWTVVLLNAIIGALAQ 817

Query: 530 HRDAEMA 536
           H  +E A
Sbjct: 818 HGFSEEA 824



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 212/486 (43%), Gaps = 48/486 (9%)

Query: 107 LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166
           ++ D   D   +  LL+       +  GK  H  +   G +  +F+ N LI+ Y  CG +
Sbjct: 17  VRVDRAADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSL 76

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME-RKGVLPTSVTIVLVLSA 225
           + A  IF    + +VV+W A+ S   +   F     LF  M       P S T+V +L+A
Sbjct: 77  EEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNA 136

Query: 226 CAKLKDLDVGKRAHRYVKECKI----VPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           CA  +DL +G+  H  + E  +        ++ NA+ +MYA CG    A+ +F  I    
Sbjct: 137 CANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTI---- 192

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFREMQ 340
                                      PE+D V WTAM   Y +  RF  +AL +FREM 
Sbjct: 193 ---------------------------PEKDVVSWTAMAGAYAQERRFYPDALRIFREML 225

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
              + P+  T ++ L AC +L     G W+ + + +  +  D   GNALI+MY KCGD E
Sbjct: 226 LQPLAPNVITFITALGACTSL---RDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWE 282

Query: 401 KAQRVFREMLRK---DKFTWTAMIVGLAING-HGDKSLDMFSQMLRASIIPDEVTYVGVL 456
            A  VF+ M  +   D  +W AMI      G HGD ++ +F ++    + P+ VT + +L
Sbjct: 283 GAYGVFKAMASRQELDLVSWNAMISASVEAGRHGD-AMAIFRRLRLEGMRPNSVTLITIL 341

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           +A   +G+       F     + G   +      ++ +  + G  + A  V + +  K +
Sbjct: 342 NALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCD 401

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQIL--ELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
            I W  +LGA    +           +L   +DP N+  ++ + N  +     D  R++ 
Sbjct: 402 VISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDP-NKVSFIAILNACSNSEALDFGRKIH 460

Query: 575 QMILDR 580
            +IL R
Sbjct: 461 SLILTR 466



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 140/550 (25%), Positives = 237/550 (43%), Gaps = 66/550 (12%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGL----LTNPTVQNK 53
           M   SS +P S       L++ +  C +   L   + IH+   +LGL     T   V N 
Sbjct: 117 MLLESSAAPNSY-----TLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNA 171

Query: 54  LVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDS-HKNGVLIYLDMLKSDVR 112
           ++    ++ G  + A  VF  IP   V  W  M   Y++    + + + I+ +ML   + 
Sbjct: 172 MINMY-AKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLA 230

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHC--HVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170
           P+  TF   L   T   ++  G  LH   H    GFD      NALI+ Y  CG+ + A 
Sbjct: 231 PNVITFITALGACT---SLRDGTWLHSLLHEAGLGFDP--LAGNALINMYGKCGDWEGAY 285

Query: 171 GIFDVSYKD---DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
           G+F         D+V+WNAM S      +  +   +F  +  +G+ P SVT++ +L+A A
Sbjct: 286 GVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALA 345

Query: 228 KLK-DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISW 285
               D    ++ H  + E   + ++++ NA+  MYA CG    A  +F  I+ K DVISW
Sbjct: 346 ASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISW 405

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
             ++    +R                                 F + +  F  M  + I 
Sbjct: 406 NTMLGASEDR-------------------------------KSFGKVVNTFHHMLLAGID 434

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYI-DKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           P++ + ++IL AC+N  AL+ G  + + I  + +   +  V   L+ MY KCG + +A+ 
Sbjct: 435 PNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAEL 494

Query: 405 VFREM--LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           VF+EM    +   TW  M+   A N    ++     +ML+  ++PD +++  VLS+C  +
Sbjct: 495 VFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS 554

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
                 R     M I      +      ++ + GR   L +A  V   M    + + W A
Sbjct: 555 QEAQVLR-----MCILESGYRSACLETALISMHGRCRELEQARSVFDEMD-HGDVVSWTA 608

Query: 523 LLGACRVHRD 532
           ++ A   +RD
Sbjct: 609 MVSATAENRD 618



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 6/299 (2%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L + ++TC     L   K IH+   ++GL  +  V+N L+    S  GD + A   F  +
Sbjct: 641 LATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMY-SNCGDWREALSFFETM 699

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
               +  WN M   Y++    K  VL++  M    V+PD  TF   L        V  GK
Sbjct: 700 KARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGK 759

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
             H    + G DS V V   L+  Y  CG++D A  +F  + +  VV  NA+     +  
Sbjct: 760 LFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHG 819

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLILE 254
             +E  K+F +M+++GV P   T+V ++SAC     ++ G  +   +KE   I P L   
Sbjct: 820 FSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHY 879

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKD-VISWTAIVTGYINRGQVDMARQYFDQMPERD 312
               D+    G++  A +I   +  +D  + WT+++     +G  ++  +   ++ E D
Sbjct: 880 ACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELD 938


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/728 (33%), Positives = 387/728 (53%), Gaps = 72/728 (9%)

Query: 25  TCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWN 84
           + +S  Q +Q+H+Q +K    +   +   L  +  S    +  + ++F  I  P    W 
Sbjct: 18  SIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIY--SHINLLHDSLRLFNTIHFPPALAWK 75

Query: 85  TMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF 144
           ++I+ Y+        +  ++ ML S + PD+  FP +LK     + +  G+ LH ++++ 
Sbjct: 76  SVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRV 135

Query: 145 GFDSSVFVQNALISTYCL-------------CGEV-------------------DMARGI 172
           G D  ++  NAL++ Y                GEV                   D  R I
Sbjct: 136 GLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKI 195

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           F++  + D+V+WN + +G  R   ++ET ++  EM    + P S T+  VL   A+  D+
Sbjct: 196 FEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDI 255

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
             GK  H       +  ++ + ++L DMYA C  +  +  +F                  
Sbjct: 256 SRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF------------------ 297

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
                          + ERD + W ++I G ++   F E L  FR+M  + I+P  ++  
Sbjct: 298 -------------TLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFS 344

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           SI+ ACA+L  L LG+ +  YI +N    +IF+ ++L+DMY KCG++  A+++F  M  +
Sbjct: 345 SIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR 404

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D  +WTAMI+G A++G    ++++F QM    I         VL+AC+H G+VDE  +YF
Sbjct: 405 DMVSWTAMIMGCALHGQAPDAIELFEQMETEGI-------KAVLTACSHGGLVDEAWKYF 457

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
             MT   GI P   HY  + DLLGRAG L EA + I  M + P   +W  LL ACRVH++
Sbjct: 458 NSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKN 517

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE 592
            +MAE  A +ILE+DP+N   Y+LL NIY+A  RW    + R  +   GI+KTP CS IE
Sbjct: 518 IDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIE 577

Query: 593 MNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQH 652
           +   V+ F+AGD+SHP  ++I   ++ +   ++  GY+PD SEV  DV EE K+  V  H
Sbjct: 578 VKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSH 637

Query: 653 SEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHG 712
           SE+LA+ FG+I++  G+TIR+ KNLR+C DCH   K +S +  RE++VRD +RFHHFK+G
Sbjct: 638 SERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNG 697

Query: 713 SCSCKDYW 720
           +CSC DYW
Sbjct: 698 TCSCGDYW 705


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/551 (40%), Positives = 340/551 (61%), Gaps = 6/551 (1%)

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRV----KQFDETRKLFGEMERKGVLPTSVTIVL 221
           +D A  I D S K  +   N+M   + +     K FD   ++       G+ P + T+  
Sbjct: 64  LDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSS--GNGLKPDNYTVNF 121

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           ++ AC  L   + G + H          +  ++  L  +YA  G +    ++F ++   D
Sbjct: 122 LVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPD 181

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
            +  TA+VT     G V  AR+ F+ MPE+D + W AMI GY +V   REAL LF  MQ 
Sbjct: 182 FVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQL 241

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             ++ +  +++S+L+AC  LGAL+ G W  +YI++NK+K  + +G  L+D+Y KCGD++K
Sbjct: 242 EGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDK 301

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A  VF  M  K+ +TW++ + GLA+NG G+K L +FS M +  + P+ VT+V VL  C+ 
Sbjct: 302 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSV 361

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
            G VDEG+++F  M  + GIEP   HYGC+VDL  RAG L +A+ +I+ MPMK ++ VW 
Sbjct: 362 VGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWS 421

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
           +LL A R++++ E+  +A+K++LEL+  N   YVLL NIYA  + WDN   +RQ +  +G
Sbjct: 422 SLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKG 481

Query: 582 IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
           ++K PGCS++E+NG VHEF  GDKSHP+  EI     +++  L+  GY  D + V  D+ 
Sbjct: 482 VRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDID 541

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
           EE+KE A+  HSEK A+AFG++S    V IRIVKNLR+C DCH+++ ++S +++RE+IVR
Sbjct: 542 EEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 601

Query: 702 DKTRFHHFKHG 712
           D+ RFHHFK G
Sbjct: 602 DRNRFHHFKDG 612



 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 184/511 (36%), Positives = 289/511 (56%), Gaps = 32/511 (6%)

Query: 211  GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
            G  P  VT + ++SAC    + + G   H  V +  ++  + + NAL ++Y   G++  +
Sbjct: 632  GFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISS 691

Query: 271  LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
             ++F ++  K+++S                               W  MI  +L+     
Sbjct: 692  CKLFEDLSVKNLVS-------------------------------WNTMIVIHLQNGLAE 720

Query: 331  EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
            E L  F   +   ++PD+ T +++L  C ++G + L + +   I       +  +  AL+
Sbjct: 721  EGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALL 780

Query: 391  DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            D+Y K G +E +  VF E+   D   WTAM+   A +G+G  ++  F  M+   + PD V
Sbjct: 781  DLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHV 840

Query: 451  TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
            T+  +L+AC+H+G+V+EGR YF  M+ ++ IEP   HY CMVDL+GR+G L +A  +IK 
Sbjct: 841  TFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKE 900

Query: 511  MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
            MPM+P+S VWGALLGACRV++D ++   AAK++ EL+P +   Y++L NIY+A   W + 
Sbjct: 901  MPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDA 960

Query: 571  RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF-VGY 629
              +R ++  +G+ +  G S IE    +H+FV GD SHP++++I  KL E+   +K  +G+
Sbjct: 961  SRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGF 1020

Query: 630  MPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKL 689
                  V  DV E+ KE  + QHSEK+AMAFGL+   P   I I KNLR+C DCH  AK 
Sbjct: 1021 KSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKA 1080

Query: 690  VSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +S++  R +I+RD  RFHHF  GSCSC+DYW
Sbjct: 1081 ISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 208/441 (47%), Gaps = 69/441 (15%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIP 76
           P IS +++  +  +++QIH++    G L +  +  + V     S+   + YA ++  +  
Sbjct: 16  PAISLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSD 75

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRDIAVEFG 134
           +P++   N+MI+ + +    +     Y  +L S   ++PDNYT  FL++  T     E G
Sbjct: 76  KPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETG 135

Query: 135 KELHCHVLKFGFDSSVFVQNALISTY----CL---------------------------C 163
            ++H   ++ GFD+   VQ  LIS Y    CL                           C
Sbjct: 136 LQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARC 195

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G+V  AR +F+   + D + WNAM SGY +V +  E   LF  M+ +GV    V+++ VL
Sbjct: 196 GDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVL 255

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           SAC +L  LD G+ AH Y++  KI   + L   L D+YA CG+M  A+E+F  ++ K+V 
Sbjct: 256 SACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVY 315

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFREMQTS 342
           +W++ + G                                L +N F E  L LF  M+  
Sbjct: 316 TWSSALNG--------------------------------LAMNGFGEKCLKLFSLMKQD 343

Query: 343 NIRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
            + P+  T VS+L  C+ +G ++ G+    +  ++  ++  +     L+D+Y + G +E 
Sbjct: 344 GVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLED 403

Query: 402 AQRVFREM-LRKDKFTWTAMI 421
           A  + ++M ++     W++++
Sbjct: 404 AVSIIQQMPMKAHAAVWSSLL 424



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 135/320 (42%), Gaps = 35/320 (10%)

Query: 106 MLKSDV--RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
           M++S+V  RP+  TF  ++         E G  +H  V+K G    V V NAL++ Y   
Sbjct: 626 MMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKT 685

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G++  +  +F+     ++V+WN M   + +    +E    F      G+ P   T + VL
Sbjct: 686 GDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVL 745

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
             C  +  + + +  H  +  C    N  +  AL D+YA  G +  +  +F  I + D +
Sbjct: 746 RVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSM 805

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           +WTA++  Y   G                                 R+A+  F  M    
Sbjct: 806 AWTAMLAAYATHGY-------------------------------GRDAIKHFELMVHYG 834

Query: 344 IRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
           + PD  T   +L AC++ G +E G  + +T   + +++  +   + ++D+  + G ++ A
Sbjct: 835 LSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDA 894

Query: 403 QRVFREM-LRKDKFTWTAMI 421
             + +EM +      W A++
Sbjct: 895 YGLIKEMPMEPSSGVWGALL 914



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 9/247 (3%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IH   +K G+L    V N L+     + GD+  +CK+F  +   ++  WNTMI  + +  
Sbjct: 659 IHGLVMKSGVLEEVKVVNALMNLY-GKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNG 717

Query: 95  SHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIA-VEFGKELHCHVLKFGFDSSVFV 152
             + G L Y +M +   ++PD  TF  +L+    DI  V   + +H  ++  GF+++  +
Sbjct: 718 LAEEG-LAYFNMSRWVGLKPDQATFLAVLR-VCEDIGVVRLSQGIHGLIMFCGFNANTCI 775

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             AL+  Y   G ++ +  +F      D + W AM + Y       +  K F  M   G+
Sbjct: 776 TTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGL 835

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFAL 271
            P  VT   +L+AC+    ++ G+     + K  +I P L   + + D+    G  G   
Sbjct: 836 SPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLM---GRSGLLQ 892

Query: 272 EIFGNIK 278
           + +G IK
Sbjct: 893 DAYGLIK 899


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/540 (42%), Positives = 332/540 (61%), Gaps = 39/540 (7%)

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLP-TSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           WN M  GY R     E   L+  M  KG+ P  + T   +L++CA+L  L+ G   H ++
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +     +L + NAL  +Y+          +FGN+                     ++AR
Sbjct: 62  IKHGFESDLFVRNALIHLYS----------VFGNL---------------------NLAR 90

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
             FD+   RD V +  MI GY  VN+   AL LF EMQ S    DE T+V++L+ACA LG
Sbjct: 91  TLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSACARLG 146

Query: 363 ALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR--KDKFTWTA 419
           A +LG+ +   YI+      +  +  A++DMY KCG ++ A  +FR + +  K  F + +
Sbjct: 147 AFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNS 206

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           MI GLA +G G+ ++ +F +++   + PDEVT+VGVL AC H+G+++EG++ F  M   +
Sbjct: 207 MIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAY 266

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           GI+P   HYGCMVDLLGR G L EA ++++ MP + NS++W ALL ACR H + ++ E+A
Sbjct: 267 GIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIA 326

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
            +++LE++  + A YVLL NI A  N+W+  R++R+++ D GI+K PG S IE+ G +H 
Sbjct: 327 GQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHR 386

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA 659
           FVA DKSHPQ KEI L L +M   LK  GY+P+ ++V  D+ EE+KE  V  HSEKLA+A
Sbjct: 387 FVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALA 446

Query: 660 FGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
           FGL+   P  TIRIVKNLR+C DCH+  KLVS +Y RE+ VRD  RFHHF++GSCSC D+
Sbjct: 447 FGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 206/383 (53%), Gaps = 49/383 (12%)

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP-DNYTFPFLLKGFTRDIAVEFGKELHCH 140
           +WNTMI+GYSR D+ +  +++Y+ M+   + P +N+TFPFLL    R  ++E G E+H H
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           ++K GF+S +FV+NALI  Y + G +++AR +FD S   D+V++N M  GY  V Q +  
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNLILENALTD 259
             LFGEM+        VT+V VLSACA+L   D+GKR  H+Y++      N IL  A+ D
Sbjct: 121 LCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMD 176

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA CG +  ALEIF  +          + TG++                      + +M
Sbjct: 177 MYAKCGSIDSALEIFRRVGKN-------MKTGFV----------------------FNSM 207

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNK 378
           I G  +      A+T+FRE+ ++ ++PDE T V +L AC + G +E G +  ++  +   
Sbjct: 208 IAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYG 267

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH-------G 430
           +K  +     ++D+  + G +E+A  + ++M    +   W A++     +G+       G
Sbjct: 268 IKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAG 327

Query: 431 DKSLDMFSQ-----MLRASIIPD 448
            K L+M +Q     +L ++I+ D
Sbjct: 328 QKLLEMEAQHGARYVLLSNILAD 350



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 16/252 (6%)

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRP-DEFTIVSILTACANLGALELGEWVKTY 373
           +W  MI GY R +  REA+ L+  M    I P + FT   +L +CA L +LE G  V ++
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           I K+  ++D+FV NALI +Y   G++  A+ +F E L +D  ++  MI G A     + +
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI-EPNEAHYGCMV 492
           L +F +M  +    DEVT V VLSAC   G  D G+  +    I++G+   N      ++
Sbjct: 121 LCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQY-IENGVFNQNTILTAAVM 175

Query: 493 DLLGRAGHLNEALEVI----KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--L 546
           D+  + G ++ ALE+     KNM       V+ +++     H   E A    ++++   L
Sbjct: 176 DMYAKCGSIDSALEIFRRVGKNM---KTGFVFNSMIAGLAQHGLGETAITVFRELISTGL 232

Query: 547 DPDNEAVYVLLC 558
            PD      +LC
Sbjct: 233 KPDEVTFVGVLC 244



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 157/350 (44%), Gaps = 20/350 (5%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           I+PP+  T   P +  + +C  +  L+   ++HS  IK G  ++  V+N L+    S  G
Sbjct: 30  IAPPNNFT--FPFL--LNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLY-SVFG 84

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           ++  A  +F +     +  +NTMIKGY+ ++  ++ + ++ +M  S    D  T   +L 
Sbjct: 85  NLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLS 140

Query: 124 GFTRDIAVEFGKELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD--D 180
              R  A + GK L+   ++ G F+ +  +  A++  Y  CG +D A  IF    K+   
Sbjct: 141 ACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKT 200

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
              +N+M +G  +    +    +F E+   G+ P  VT V VL AC     ++ GK+   
Sbjct: 201 GFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFE 260

Query: 241 YV-KECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQV 298
            +     I P +     + D+    G +  A ++   +    + + W A+++     G V
Sbjct: 261 SMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNV 320

Query: 299 ---DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
              ++A Q   +M  +    +  + +     N++ EA  + + M+   IR
Sbjct: 321 KIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIR 370


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/715 (34%), Positives = 395/715 (55%), Gaps = 41/715 (5%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           P+T T     ++ ++ CE    +KQ   IH+  +K     N  V N L+    +  G M 
Sbjct: 280 PNTYT----FVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMY-ARFGKMG 334

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
            A  +F  +       WN+M+ G+ +   +   +  Y +M  +  +PD      ++    
Sbjct: 335 EAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA 394

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           R      G ++H + +K G DS + V N+L+  Y     +     IFD     DVV+W  
Sbjct: 395 RSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTT 454

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           + +G+ +        +LF E++ +G+    + I  +L AC+ LK +   K  H Y+   K
Sbjct: 455 IIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR-K 513

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
            + +L+L+N + D+Y  CG                                VD A + F+
Sbjct: 514 GLSDLVLQNGIVDVYGECG-------------------------------NVDYAARMFE 542

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
            +  +D V WT+MI  Y+      EAL LF  M+ + + PD  ++VSIL+A A+L AL+ 
Sbjct: 543 LIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKK 602

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+ +  ++ +     +  + + L+DMY +CG +EK++ VF  +  KD   WT+MI    +
Sbjct: 603 GKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGM 662

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G  ++D+F +M   SI PD + +V VL AC+H+G+++EGR +   M  ++ +EP   
Sbjct: 663 HGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPE 722

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY C+VDLLGRA HL EA + +K M ++P + VW ALLGAC++H + E+ E+AA+++LE+
Sbjct: 723 HYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEM 782

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           DP+N   YVL+ N+Y+A  RW +   +R  +   G+KK PGCS IE+   VH F+A DKS
Sbjct: 783 DPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKS 842

Query: 607 HPQTKEIYLKLDEMTSDL-KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           HPQ+ EIY KL ++T  L K  GY+     V  +  EE+K + +Y HSE+LA+A+G++++
Sbjct: 843 HPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTT 902

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             G ++RI KNLR+C DCH   KL+S  ++RE+++RD  RFHHFK G CSC D W
Sbjct: 903 PEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 156/544 (28%), Positives = 260/544 (47%), Gaps = 62/544 (11%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTF 57
           +F+N S   PS  + +    S +E C S   L   +Q+H+  I    L N    +  + F
Sbjct: 66  LFANQS---PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVF 122

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
              + G +  A K+F  +P  ++  WN MI  Y         + +Y +M  S +  D  T
Sbjct: 123 MYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACT 182

Query: 118 FPFLLK--GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD- 174
           FP +LK  G  +D    +G E+H   +K G+ S VFV N+++  Y  C +++ AR +FD 
Sbjct: 183 FPCILKACGLLKD--RRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDR 240

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
           +  K+DVV+WN+M S Y    Q  E  +LFGEM++  + P + T V  L AC     +  
Sbjct: 241 MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQ 300

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G   H  V +     N+ + NAL  MYA  G+MG A  IF N+ + D ISW ++++G++ 
Sbjct: 301 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 360

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G                                + EAL  + EM+ +  +PD   ++SI
Sbjct: 361 NG-------------------------------LYHEALQFYHEMRDAGQKPDLVAVISI 389

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           + A A  G    G  +  Y  KN + +D+ VGN+L+DMY K   ++    +F +M  KD 
Sbjct: 390 IAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDV 449

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY--- 471
            +WT +I G A NG   ++L++F ++    I  D +    +L AC+   ++   +E    
Sbjct: 450 VSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSY 509

Query: 472 -----FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
                 +D+ +Q+GI          VD+ G  G+++ A  + + +  K + + W +++ +
Sbjct: 510 IIRKGLSDLVLQNGI----------VDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-S 557

Query: 527 CRVH 530
           C VH
Sbjct: 558 CYVH 561


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/588 (38%), Positives = 349/588 (59%), Gaps = 35/588 (5%)

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  +++ G     F+   L+ +   C  +D A  IF  ++  +V  + A+  G+     
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
           + E  +L+  M  + +LP +  +  +L AC     L  G+  H    +     N ++   
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 177

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE----RD 312
           + ++Y  CGE+G                                AR+ F++MPE    +D
Sbjct: 178 IMELYGKCGELG-------------------------------DARRVFEEMPEDVVAKD 206

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V WTAMIDG++R      AL  FR MQ  N+RP+EFTIV +L+AC+ LGALE+G WV +
Sbjct: 207 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS 266

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           Y+ K +++ ++FVGNALI+MY +CG +++AQ VF EM  +D  T+  MI GL++NG   +
Sbjct: 267 YMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQ 326

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           ++++F  M+   + P  VT+VGVL+AC+H G+VD G E F  M   + +EP   HYGCMV
Sbjct: 327 AIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMV 386

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGR G L EA ++I+ M M P+ I+ G LL AC++H++ E+ E  AK++ +    +  
Sbjct: 387 DLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSG 446

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVLL ++YA+  +W    ++R  + + G++K PGCS IE+N  +HEF+ GD  HPQ + 
Sbjct: 447 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKER 506

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY KL+E+   L+  GY P+   V  D+ + +KE A+  HSE+LA+ +GLIS+ P   IR
Sbjct: 507 IYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIR 566

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++KNLR+C DCH   KL++ +  R+++VRD+ RFH+F++G+CSC DYW
Sbjct: 567 VMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 235/482 (48%), Gaps = 46/482 (9%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           SNS+     +L Q+  +IS ++    ++Q+  IH+Q I+ G   +P +  +L+   CS+ 
Sbjct: 27  SNSNPKSLKSLDQKQ-IISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLR-SCSKC 84

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
             + YA ++F+    P+V L+  +I G+    ++   + +Y  ML   + PDNY    +L
Sbjct: 85  HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASIL 144

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD--- 179
           K     +A+  G+E+H   LK GF S+  V+  ++  Y  CGE+  AR +F+   +D   
Sbjct: 145 KACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVA 204

Query: 180 -DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D V W AM  G+ R ++ +   + F  M+ + V P   TIV VLSAC++L  L++G+  
Sbjct: 205 KDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWV 264

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H Y+++ +I  NL + NAL +MY+ CG +  A  +F  +K++DVI++  +++G    G+ 
Sbjct: 265 HSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKS 324

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                                          R+A+ LFR M    +RP   T V +L AC
Sbjct: 325 -------------------------------RQAIELFRVMVGRRLRPTNVTFVGVLNAC 353

Query: 359 ANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
           ++ G ++ G E   +     +V+  I     ++D+  + G +E+A  + R M    K T 
Sbjct: 354 SHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM----KMTP 409

Query: 418 TAMIVGLAING-HGDKSLDMFSQM---LRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +++G  ++     K+L++  Q+   L      D  TYV +      +G   E  +  A
Sbjct: 410 DHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRA 469

Query: 474 DM 475
            M
Sbjct: 470 KM 471



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 174/352 (49%), Gaps = 19/352 (5%)

Query: 11  STLTQETPLISPIETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDM 65
           S L     + S ++ C S   + + +++HS+ +KLG  +N  V+ +++     C E GD 
Sbjct: 132 SILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDA 191

Query: 66  KYACKVFRKIP-----RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           +   +VF ++P     + +VC W  MI G+ R +     +  +  M   +VRP+ +T   
Sbjct: 192 R---RVFEEMPEDVVAKDTVC-WTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVC 247

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +L   ++  A+E G+ +H ++ KF  + ++FV NALI+ Y  CG +D A+ +FD     D
Sbjct: 248 VLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRD 307

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG-KRAH 239
           V+T+N M SG     +  +  +LF  M  + + PT+VT V VL+AC+    +D G +  H
Sbjct: 308 VITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFH 367

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQV 298
              ++ ++ P +     + D+    G +  A ++   +K   D I    +++       +
Sbjct: 368 SMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNL 427

Query: 299 DMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           ++  Q   ++ +R   D   +  +   Y    +++EA  +  +M+ + ++ +
Sbjct: 428 ELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE 479


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/660 (37%), Positives = 362/660 (54%), Gaps = 40/660 (6%)

Query: 63   GDMKYACKVFRKIPRPSVCL--WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
            G +  A  VF+++P PS  L  WN M+  Y++ D  K      ++ML+  V PD  +F  
Sbjct: 487  GSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTS 546

Query: 121  LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
            +L   +     +  + L   +L+ G+ S+  ++ ALIS +  C E++ AR +F+     D
Sbjct: 547  VL---SSCYCSQEAQVLRMCILESGYRSAC-LETALISMHGRCRELEQARSVFNEMDHGD 602

Query: 181  VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
            VV+W AM S     + F E   LF  M+ +GV+P   T+   L  C     L +GK  H 
Sbjct: 603  VVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHA 662

Query: 241  YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
             V E  +  ++ +ENAL +MY+ CG+   AL                             
Sbjct: 663  CVTEIGLEADIAVENALLNMYSNCGDWREAL----------------------------- 693

Query: 301  ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
               +F+ M  RD V W  M   Y +    +EA+ LFR+MQ   ++PD+ T  + L     
Sbjct: 694  --SFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGG 751

Query: 361  LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
               +  G+       ++ + +D+ V   L+ +Y KCG +++A  +FR           A+
Sbjct: 752  SALVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAI 811

Query: 421  IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
            I  LA +G  ++++ MF +M +  + PD  T V ++SAC H GMV+EG   F  M    G
Sbjct: 812  IGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFG 871

Query: 481  IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
            I P   HY C VDLLGRAG L  A ++I+ MP + N++VW +LLG C++  DAE+ E  A
Sbjct: 872  ISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCA 931

Query: 541  KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
            ++ILELDP N A +V+L NIY A  +W +    R+ +LD  +K  PG S  E+   VHEF
Sbjct: 932  QRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEF 991

Query: 601  VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
            VAGD+SHP+T EIY+ LD++   ++  GY  D     LDV +E KE+A+  HSE++A+AF
Sbjct: 992  VAGDRSHPKTDEIYVVLDKLELLMRRAGYEADKG---LDVEDELKEKALGYHSERIAIAF 1048

Query: 661  GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            GLI++ P  T++IVKNLR+C DCH   K +SMV  RE+IVRD  RFHHF +G+CSCKD W
Sbjct: 1049 GLIATPPETTLKIVKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/607 (22%), Positives = 251/607 (41%), Gaps = 91/607 (14%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
            P+ +T     I+ +  C S+     +HS   +  L  +P   N L+     + GD + A
Sbjct: 230 APNVIT----FITALGACTSLRDGTWLHSLLHEASLGFDPLASNALINMY-GKCGDWEGA 284

Query: 69  CKVFRKIPRPS---VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             VF+ +       +  WN MI        H + + I+  +    +RP++ T   +L   
Sbjct: 285 YSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNAL 344

Query: 126 TRDIAVEFG--KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVV 182
                V+FG  +  H  + + G+   V + NA+IS Y  CG    A  +F  + +K DV+
Sbjct: 345 AAS-GVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVI 403

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WN M    +  K F +    F  M   G+ P  V+ + +L+AC+  + LD G++ H  +
Sbjct: 404 SWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLI 463

Query: 243 --KECKIVPNLILENALTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVTGYINRGQV 298
             +    V + +    L  MY  CG +  A  +F    + ++ +++W  ++  Y    Q 
Sbjct: 464 LTRRRDYVESSV-ATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAY---AQN 519

Query: 299 DMARQYFDQMPE--------------------------------------RDYVLWTAMI 320
           D +++ F  + E                                      R   L TA+I
Sbjct: 520 DRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALI 579

Query: 321 DGYLRVNRFREALTLF-------------------------------REMQTSNIRPDEF 349
             + R     +A ++F                               R MQ   + PD+F
Sbjct: 580 SMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKF 639

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
           T+ + L  C     L LG+ +   + +  ++ DI V NAL++MY  CGD  +A   F  M
Sbjct: 640 TLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETM 699

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469
             +D  +W  M    A  G   +++ +F QM    + PD++T+   L+    + +V +G+
Sbjct: 700 KARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGK 759

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529
            + A +  + G++ + +    +V L  + G L+EA+ + +        ++  A++GA   
Sbjct: 760 LFHA-LAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRG-ACDWTVVLLNAIIGALAQ 817

Query: 530 HRDAEMA 536
           H  +E A
Sbjct: 818 HGFSEEA 824



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 213/485 (43%), Gaps = 46/485 (9%)

Query: 107 LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166
           ++ D   D   +  LL+       +  GK  H  +   G +  +F+ N LI+ Y  CG +
Sbjct: 17  VRVDRAADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSL 76

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSA 225
           + A  IF    + +VV+W A+ S   +   F     LF  M       P S T+V +L+A
Sbjct: 77  EEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNA 136

Query: 226 CAKLKDLDVGKRAHRYVKECKI----VPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           CA  +DL +G+  H  + E  +        ++ NA+ +MYA CG +  A+ +F  I  KD
Sbjct: 137 CANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKD 196

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V+SWTA+   Y                 ER +               + +AL +FREM  
Sbjct: 197 VVSWTAMAGAYAQ---------------ERRF---------------YPDALRIFREMLL 226

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             + P+  T ++ L AC +   L  G W+ + + +  +  D    NALI+MY KCGD E 
Sbjct: 227 QPLAPNVITFITALGACTS---LRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEG 283

Query: 402 AQRVFREMLRK---DKFTWTAMIVGLAING-HGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
           A  VF+ M  +   D  +W AMI      G HGD ++ +F ++    + P+ VT + +L+
Sbjct: 284 AYSVFKAMASRQELDLVSWNAMISASVEAGRHGD-AMAIFRRLRLEGMRPNSVTLITILN 342

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           A   +G+       F     + G   +      ++ +  + G  + A  V + +  K + 
Sbjct: 343 ALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDV 402

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQIL--ELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           I W  +LGA    +           +L   +DP N+  ++ + N  +     D  R++  
Sbjct: 403 ISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDP-NKVSFIAILNACSNSEALDFGRKIHS 461

Query: 576 MILDR 580
           +IL R
Sbjct: 462 LILTR 466



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 139/550 (25%), Positives = 236/550 (42%), Gaps = 66/550 (12%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGL----LTNPTVQNK 53
           M   SS +P S       L++ +  C +   L   + IH+   +LGL     T   V N 
Sbjct: 117 MLLESSAAPNSY-----TLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNA 171

Query: 54  LVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDS-HKNGVLIYLDMLKSDVR 112
           ++    ++ G ++ A  VF  IP   V  W  M   Y++    + + + I+ +ML   + 
Sbjct: 172 MINMY-AKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLA 230

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHC--HVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170
           P+  TF   L   T   ++  G  LH   H    GFD      NALI+ Y  CG+ + A 
Sbjct: 231 PNVITFITALGACT---SLRDGTWLHSLLHEASLGFDP--LASNALINMYGKCGDWEGAY 285

Query: 171 GIFDVSYKD---DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
            +F         D+V+WNAM S      +  +   +F  +  +G+ P SVT++ +L+A A
Sbjct: 286 SVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALA 345

Query: 228 KLK-DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISW 285
               D    +  H  + E   + ++++ NA+  MYA CG    A  +F  I+ K DVISW
Sbjct: 346 ASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISW 405

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
             ++    +R                                 F + +  F  M  + I 
Sbjct: 406 NTMLGASEDR-------------------------------KSFGKVVNTFHHMLLAGID 434

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYI-DKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           P++ + ++IL AC+N  AL+ G  + + I  + +   +  V   L+ MY KCG + +A+ 
Sbjct: 435 PNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAEL 494

Query: 405 VFREM--LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           VF+EM    +   TW  M+   A N    ++     +ML+  ++PD +++  VLS+C  +
Sbjct: 495 VFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS 554

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
                 R     M I      +      ++ + GR   L +A  V   M    + + W A
Sbjct: 555 QEAQVLR-----MCILESGYRSACLETALISMHGRCRELEQARSVFNEMD-HGDVVSWTA 608

Query: 523 LLGACRVHRD 532
           ++ A   +RD
Sbjct: 609 MVSATAENRD 618



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 6/299 (2%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L + ++TC +   L   K IH+   ++GL  +  V+N L+    S  GD + A   F  +
Sbjct: 641 LATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMY-SNCGDWREALSFFETM 699

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
               +  WN M   Y++    K  VL++  M    V+PD  TF   L        V  GK
Sbjct: 700 KARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGK 759

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
             H    + G DS V V   L+  Y  CG++D A  +F  +    VV  NA+     +  
Sbjct: 760 LFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHG 819

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLILE 254
             +E  K+F +M+++GV P   T+V ++SAC     ++ G  +   +KE   I P L   
Sbjct: 820 FSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHY 879

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKD-VISWTAIVTGYINRGQVDMARQYFDQMPERD 312
               D+    G++  A +I   +  +D  + WT+++     +G  ++  +   ++ E D
Sbjct: 880 ACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELD 938


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 344/600 (57%), Gaps = 32/600 (5%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           L+    R  +++  + +H H+    F  SVF+ N+LI  YC CG V  AR +FD     D
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           + +W ++ +GY +    DE   L   M R    P   T   +L A        +G++ H 
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
              +     ++ + +AL DMYA CG M                               DM
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRM-------------------------------DM 218

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           A   FDQ+  ++ V W A+I G+ R       L +F EMQ +      FT  S+ +A A 
Sbjct: 219 AIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAG 278

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           +GALE G+WV  ++ K+  +   FVGN ++DMY K G +  A++VF  + +KD  TW +M
Sbjct: 279 IGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSM 338

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           +   A  G G +++  F +M +  +  +++T++ +L+AC+H G+V EG++YF DM  ++ 
Sbjct: 339 LTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-DMMKEYN 397

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           +EP   HY  +VDLLGRAG LN+AL  I  MPMKP + VWGALLG+CR+H++A++ + AA
Sbjct: 398 LEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAA 457

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
             + ELDPD+    VLL NIYA+  +WD    +R+M+   G+KK P CS +E+   VH F
Sbjct: 458 DHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMF 517

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
           VA D +HP+++EIY K +E++  ++  GY+P+   V L V E++++  +  HSEK+A+AF
Sbjct: 518 VANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAF 577

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            LI+   G TIRI+KN+R+C DCH   + +S V+ RE++VRD  RFHHF  GSCSC DYW
Sbjct: 578 ALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 189/409 (46%), Gaps = 43/409 (10%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           LI+      S+   + IH+         +  + N L+   C + G +  A +VF  +P  
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYC-KCGAVADARRVFDGMPAR 128

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            +C W ++I GY++ D     + +   ML+   +P+ +TF  LLK      +   G+++H
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
              +K+ +   V+V +AL+  Y  CG +DMA  +FD     + V+WNA+ +G+ R    +
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 248

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
            T  +F EM+R G   T  T   V SA A +  L+ GK  H ++ +     +  + N + 
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA  G M  A ++F  +  KDV++W +++T +   G                      
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLG-------------------- 348

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
                      REA+T F EM+   +  ++ T +SILTAC++ G ++ G   K Y D  K
Sbjct: 349 -----------REAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEG---KQYFDMMK 394

Query: 379 VKN-----DIFVGNALIDMYCKCGDVEKAQR-VFREMLRKDKFTWTAMI 421
             N     D +V   ++D+  + G +  A   +F+  ++     W A++
Sbjct: 395 EYNLEPEIDHYV--TVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 441



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 92/182 (50%), Gaps = 2/182 (1%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           S++TACA   +L+    +  ++  ++    +F+ N+LI +YCKCG V  A+RVF  M  +
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D  +WT++I G A N   D++L +   MLR    P+  T+  +L A   +     G +  
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
           A +T+++    +      ++D+  R G ++ A+ V   +  K N + W AL+       D
Sbjct: 189 A-LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAGFARKGD 246

Query: 533 AE 534
            E
Sbjct: 247 GE 248


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/719 (34%), Positives = 381/719 (52%), Gaps = 68/719 (9%)

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           KVF  +P+ +V  W +++ GY +  +  + + ++  M    V P++ TF  +L       
Sbjct: 160 KVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQG 219

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            V+ G+ +H   +KFG  S+VFV N+L++ Y  CG V+ AR +F      D+V+WN + +
Sbjct: 220 MVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMA 279

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           G        E  +LF +      + T  T   V+  CA +K L + ++ H  V +     
Sbjct: 280 GLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHS 339

Query: 250 NLILENALTDMYAACGEMGFALEIF-----------------GNIKNKDV---------- 282
              +  AL D Y+  G++G AL+IF                 G I+N DV          
Sbjct: 340 YGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRM 399

Query: 283 ----------------------------------------ISWTAIVTGYINRGQVDMAR 302
                                                   I  TA++  Y      + A 
Sbjct: 400 REDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEAL 459

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
             F  + ++D V W+AM+  Y +      A  +F +M    ++P+EFTI S++ ACA+  
Sbjct: 460 SIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPT 519

Query: 363 A-LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
           A ++LG        K++  + + V +AL+ MY + G +E AQ +F     +D  +W +M+
Sbjct: 520 AGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSML 579

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G A +G+  K+LD+F QM    I  D VT++ V+  C H G+V+EG+ YF  M   +GI
Sbjct: 580 SGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGI 639

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
            P   HY CMVDL  RAG L+EA+ +I+ M      +VW  LLGAC+VH++ E+ ++AA+
Sbjct: 640 TPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAE 699

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           ++L L+P + A YVLL NIY+A  +W    E+R+++  + +KK  GCS I++   VH F+
Sbjct: 700 KLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFI 759

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
           A DKSHP +++IY KL  MT+ LK  GY PD S    +V EE KE  +  HSE+LA+AFG
Sbjct: 760 ASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFG 819

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LI++ PG  + I KNLR+C DCH + K+VS + DRE+++RD +RFHHF  G CSC D+W
Sbjct: 820 LIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/477 (24%), Positives = 201/477 (42%), Gaps = 79/477 (16%)

Query: 133 FGKELHCHVLKFGFD-SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
            GK+LH   ++ G D   V V  +L+  Y     V   R +F+   K +VVTW ++ +GY
Sbjct: 121 LGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGY 180

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            +     +  +LF  M  +GV P SVT   VLS  A    +D+G+R H    +      +
Sbjct: 181 IQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTV 240

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG--------------- 296
            + N+L +MYA CG +  A  +F  ++ +D++SW  ++ G +  G               
Sbjct: 241 FVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSS 300

Query: 297 --------------------QVDMARQYFDQMPERDYVLW----TAMIDGYLRVNRFREA 332
                               Q+ +ARQ    + +R +  +    TA++D Y +  +   A
Sbjct: 301 ITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNA 360

Query: 333 L--------------------------------TLFREMQTSNIRPDEFTIVSILTACAN 360
           L                                 LF  M+   + P++FT  +ILTA   
Sbjct: 361 LDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA--- 417

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
                L   +   + K   +    VG AL+  Y K  + E+A  +F+ + +KD  +W+AM
Sbjct: 418 -SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAM 476

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC-THTGMVDEGREYFADMTIQH 479
           +   A  G  D + ++F +M    + P+E T   V+ AC + T  VD GR++ A ++I+H
Sbjct: 477 LTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHA-ISIKH 535

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
                      +V +  R G + E+ + I       + + W ++L     H  ++ A
Sbjct: 536 RCHDALCVSSALVSMYARKGSI-ESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKA 591



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 142/295 (48%), Gaps = 12/295 (4%)

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           +K C  VP+ +L   L  +   CG               DV   T++V  Y+    V   
Sbjct: 110 LKVCGSVPDRVLGKQLHGLCIRCGH-----------DRGDVGVGTSLVDMYMKWHSVVDG 158

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
           R+ F+ MP+R+ V WT+++ GY++     + + LF  M+   + P+  T  S+L+  A+ 
Sbjct: 159 RKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQ 218

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
           G ++LG  V     K    + +FV N+L++MY KCG VE+A+ VF  M  +D  +W  ++
Sbjct: 219 GMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLM 278

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            GL +NGH  ++L +F     +  +  + TY  V+  C +   +   R+  + + ++ G 
Sbjct: 279 AGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSV-LKRGF 337

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
                    ++D   +AG L  AL++   M    N + W A++  C  + D  +A
Sbjct: 338 HSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLA 392



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 123/267 (46%), Gaps = 8/267 (2%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+  T  T L + + +        QIH+Q IK        V   L+    S+  + + A 
Sbjct: 406 PNDFTYSTILTASVASLP-----PQIHAQVIKTNYECTSIVGTALLA-SYSKLCNTEEAL 459

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
            +F+ I +  V  W+ M+  Y++         I++ M    ++P+ +T   ++       
Sbjct: 460 SIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPT 519

Query: 130 A-VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
           A V+ G++ H   +K     ++ V +AL+S Y   G ++ A+ IF+     D+V+WN+M 
Sbjct: 520 AGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSML 579

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKI 247
           SGY +     +   +F +ME +G+    VT + V+  CA    ++ G+R      ++  I
Sbjct: 580 SGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGI 639

Query: 248 VPNLILENALTDMYAACGEMGFALEIF 274
            P +     + D+Y+  G++  A+ + 
Sbjct: 640 TPTMEHYACMVDLYSRAGKLDEAMSLI 666



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 138/307 (44%), Gaps = 7/307 (2%)

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
           K++  ++ +  +    N      ARQ FD++P R+  L  A+ D + R     +AL  F 
Sbjct: 34  KSQSTLACSVPLENQTNLNDATGARQAFDEIPHRN-TLDHALFD-HARRGSVHQALDHFL 91

Query: 338 EM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTY-IDKNKVKNDIFVGNALIDMYCK 395
           ++ +    R     +V +L  C ++    LG+ +    I     + D+ VG +L+DMY K
Sbjct: 92  DVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMK 151

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
              V   ++VF  M +++  TWT+++ G   +G     +++F +M    + P+ VT+  V
Sbjct: 152 WHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASV 211

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           LS     GMVD GR   A  +++ G          ++++  + G + EA  V   M  + 
Sbjct: 212 LSVVASQGMVDLGRRVHAQ-SVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETR- 269

Query: 516 NSIVWGALLGACRVH-RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
           + + W  L+    ++  D E  ++       +    ++ Y  +  + A   +    R+L 
Sbjct: 270 DMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLH 329

Query: 575 QMILDRG 581
             +L RG
Sbjct: 330 SSVLKRG 336


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/590 (38%), Positives = 346/590 (58%), Gaps = 37/590 (6%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM--ARGIFDVSYKDDVVTWNAMFSGYKR 193
           ++H H+++     + F+    +S   L    DM  +  +F    K     +N M   Y  
Sbjct: 86  QIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPSGSQYNVMIRAYSM 145

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLI 252
               ++   L+ EM R+GV P  ++   V+ +C ++  L  G + H R +++     NL+
Sbjct: 146 SHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLL 205

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           L   L D+Y+ C +   A ++F                               D++P+ D
Sbjct: 206 L-TTLMDLYSCCDKFEEACKVF-------------------------------DEIPQWD 233

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTS--NIRPDEFTIVSILTACANLGALELGEWV 370
            V W  +I   +   R R+AL +F  MQ++     PD+ T + +L ACANLGALE GE V
Sbjct: 234 TVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERV 293

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             YI+++     + + N+LI MY +CG +EKA  +F+ M  ++  +W+AMI G A++G+G
Sbjct: 294 HNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYG 353

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
            ++++ F QM +  + PD+ T  GVLSAC+H G+VD+G  +F  M+   GIEPN  HYGC
Sbjct: 354 REAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGC 413

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           MVDLLGRAG L++A ++I +M +KP+S +W  LLGACR+HR A + E     ++EL    
Sbjct: 414 MVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQE 473

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              YVLL NIY++   WD   +LR+ + ++GI+ +PGCS IE+ G VHEFV  D  HP+T
Sbjct: 474 AGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRT 533

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
            EIY  LDE+   LK  GY+ ++S    ++G E+K   +  HSEKLA+AFG++++ PG T
Sbjct: 534 DEIYEMLDEIGKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTT 593

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IR+ KNLR+CVDCH  AK++S  Y+REV++RD+TRFHHF+ G CSC  YW
Sbjct: 594 IRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 225/477 (47%), Gaps = 38/477 (7%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKY 67
           P S    E  LIS I++C     L QIH+  I+  L+ N  +  + ++    S   DM Y
Sbjct: 61  PKSRDESENQLISLIKSCSKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGY 120

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           + +VF +I +PS   +N MI+ YS   S + G  +Y +M +  V P+  +  F++K   R
Sbjct: 121 SSQVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIR 180

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             ++  G ++H  +L+ G  S   +   L+  Y  C + + A  +FD   + D V+WN +
Sbjct: 181 ISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVL 240

Query: 188 FSGYKRVKQFDETRKLFGEMERK--GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
            S     ++  +  ++F  M+    G  P  VT +L+L ACA L  L+ G+R H Y++E 
Sbjct: 241 ISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEH 300

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
                L L N+L  MY+ CG +  A  IF  +  ++V+SW+A+++G+             
Sbjct: 301 GYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGF------------- 347

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
                         + GY      REA+  F +MQ   + PD+ T+  +L+AC++ G ++
Sbjct: 348 -------------AMHGY-----GREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVD 389

Query: 366 LGEWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVG 423
            G      + K   ++ +I     ++D+  + G +++A ++   M ++ D   W  ++  
Sbjct: 390 DGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGA 449

Query: 424 LAINGHGDKSLDMFSQM--LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
             I+ H      +   +  L+A    D V  + + S+  +   V + R++  +  IQ
Sbjct: 450 CRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQ 506


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/552 (40%), Positives = 341/552 (61%), Gaps = 36/552 (6%)

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229
           RGI D    D    +N M  GY  V  F+E    + EM ++G  P + T   +L AC +L
Sbjct: 90  RGIDDPCTFD----FNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRL 145

Query: 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289
           K +  GK+ H  V +  +  ++ ++N+L +MY  CGEM  +  +F  +++K   S     
Sbjct: 146 KSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAAS----- 200

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDE 348
                                     W++M+     +  + E L LFR M   +N++ +E
Sbjct: 201 --------------------------WSSMVSARAGMGMWSECLLLFRGMCSETNLKAEE 234

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
             +VS L ACAN GAL LG  +  ++ +N  + +I V  +L+DMY KCG ++KA  +F++
Sbjct: 235 SGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQK 294

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M +++  T++AMI GLA++G G+ +L MFS+M++  + PD V YV VL+AC+H+G+V EG
Sbjct: 295 MEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEG 354

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           R  FA+M  +  +EP   HYGC+VDLLGRAG L EALE I+++P++ N ++W   L  CR
Sbjct: 355 RRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCR 414

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
           V ++ E+ ++AA+++L+L   N   Y+L+ N+Y+    WD+    R  I  +G+K+TPG 
Sbjct: 415 VRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGF 474

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERA 648
           S++E+ G  H FV+ D+SHP+ KEIY  L +M   LKF GY PD++++ L+V EE+K+  
Sbjct: 475 SIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKER 534

Query: 649 VYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHH 708
           +  HS+K+A+AFGL+ + PG  I+I +NLRMC DCH   K +SM+Y+RE++VRD+ RFH 
Sbjct: 535 LKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHL 594

Query: 709 FKHGSCSCKDYW 720
           FK G+CSCKDYW
Sbjct: 595 FKGGTCSCKDYW 606



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 199/413 (48%), Gaps = 37/413 (8%)

Query: 15  QETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG---DMKYACKV 71
           +E   +  ++ C ++ + KQ+H++ IKL L  + +     V   C+  G    M YA  +
Sbjct: 29  KEQECLYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASI 88

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           FR I  P    +NTMI+GY  + S +  +  Y +M++    PDN+T+P LLK  TR  ++
Sbjct: 89  FRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSI 148

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             GK++H  V K G ++ VFVQN+LI+ Y  CGE++++  +F+        +W++M S  
Sbjct: 149 REGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSAR 208

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVT-IVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
             +  + E   LF  M  +  L    + +V  L ACA    L++G   H ++       N
Sbjct: 209 AGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELN 268

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           +I++ +L DMY  CG +  AL IF  ++ ++ ++++A+++G    G+ +           
Sbjct: 269 IIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGE----------- 317

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
                                AL +F +M    + PD    VS+L AC++ G ++ G  V
Sbjct: 318 --------------------SALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRV 357

Query: 371 -KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
               + + KV+        L+D+  + G +E+A    + + + K+   W   +
Sbjct: 358 FAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFL 410



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 136/288 (47%), Gaps = 6/288 (2%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+      +S+ + KQIH Q  KLGL  +  VQN L+       G+M+ +  VF K+   
Sbjct: 138 LLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINM-YGRCGEMELSSAVFEKLESK 196

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
           +   W++M+   + +      +L++  M  +++++ +       L       A+  G  +
Sbjct: 197 TAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSI 256

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H  +L+   + ++ VQ +L+  Y  CG +D A  IF    K + +T++AM SG     + 
Sbjct: 257 HGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEG 316

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILENA 256
           +   ++F +M ++G+ P  V  V VL+AC+    +  G+R     +KE K+ P       
Sbjct: 317 ESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGC 376

Query: 257 LTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVTGYINRGQVDMAR 302
           L D+    G +  ALE   +  I+  DVI W   ++    R  +++ +
Sbjct: 377 LVDLLGRAGLLEEALETIQSIPIEKNDVI-WRTFLSQCRVRQNIELGQ 423



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 2/125 (1%)

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A  +FR +     F +  MI G       +++L  +++M++    PD  TY  +L ACT 
Sbjct: 85  AASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTR 144

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
              + EG++    +  + G+E +      ++++ GR G +  +  V + +  K  +  W 
Sbjct: 145 LKSIREGKQIHGQV-FKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESK-TAASWS 202

Query: 522 ALLGA 526
           +++ A
Sbjct: 203 SMVSA 207


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/714 (36%), Positives = 395/714 (55%), Gaps = 35/714 (4%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV---CLWNTMIKGY 90
            +H+     G   N  V N LV+      G  + A +VF ++    V     WN+++  Y
Sbjct: 166 SVHAVVFASGFEWNVFVGNGLVSMY-GRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 224

Query: 91  SRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
            +       + ++  M +   +RPD  +   +L       A   GK++H + L+ G    
Sbjct: 225 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFED 284

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           VFV NA++  Y  CG ++ A  +F+     DVV+WNAM +GY ++ +FD+   LF ++  
Sbjct: 285 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIRE 344

Query: 210 KGVLPTSVTIVLVLSACAK----LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           + +    VT   V++  A+     + LDV     R +  C   PN++    L  + + C 
Sbjct: 345 EKIELNVVTWSAVIAGYAQRGLGFEALDV----FRQMLLCGSEPNVV---TLVSLLSGCA 397

Query: 266 EMG--------------FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
             G              + L +  N    D++   A++  Y        AR  FD +P +
Sbjct: 398 SAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPK 457

Query: 312 D--YVLWTAMIDGYLRVNRFREALTLFREM-QTSN-IRPDEFTIVSILTACANLGALELG 367
           D   V WT +I G  +     EAL LF +M Q  N + P+ FTI   L ACA LGAL  G
Sbjct: 458 DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 517

Query: 368 EWVKTYIDKNKVKND-IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
             +  Y+ +N+ ++  +FV N LIDMY K GDV+ A+ VF  M +++  +WT+++ G  +
Sbjct: 518 RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGM 577

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G+++L +F +M +  ++PD VT+V VL AC+H+GMVD+G  YF  M    G+ P   
Sbjct: 578 HGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAE 637

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY CMVDLL RAG L+EA+E+I+ MPMKP   VW ALL ACRV+ + E+ E AA Q+LEL
Sbjct: 638 HYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLEL 697

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           +  N+  Y LL NIYA    W +   +R ++ + GIKK PGCS ++       F AGD S
Sbjct: 698 ESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWS 757

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           HP +++IY  L ++   +K +GY+PD      DV +E+K   + +HSEKLA+A+G++++ 
Sbjct: 758 HPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTA 817

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           PG  IRI KNLR C DCH     +S++ + E+IVRD +RFHHFK+GSCSC+ YW
Sbjct: 818 PGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 186/576 (32%), Positives = 293/576 (50%), Gaps = 39/576 (6%)

Query: 11  STLTQETPLISPI-ETCESMHQLKQIHSQTIKLGLLTNPT-VQNKLVTFCCSEKGDMKYA 68
           ST +  T L S +   C+S+   +  H Q +  GL  +PT + +  +TF    K     A
Sbjct: 42  STASSTTDLTSTLFHQCKSLASAELTHQQLLVQGLPHDPTHIISMYLTFNSPAK-----A 96

Query: 69  CKVFRKIPRPS--VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
             V R++   S  V  WN +I+    +   ++ + +Y  M +   RPD+YTFPF+LK   
Sbjct: 97  LSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACG 156

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVT 183
              +   G  +H  V   GF+ +VFV N L+S Y  CG  + AR +FD   +    D+V+
Sbjct: 157 EIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVS 216

Query: 184 WNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           WN++ + Y +        K+F  M E  G+ P +V++V VL ACA +     GK+ H Y 
Sbjct: 217 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 276

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
               +  ++ + NA+ DMYA CG M  A ++F  +K KDV+SW A+VTGY   G+ D A 
Sbjct: 277 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDAL 336

Query: 303 QYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
             F+++ E     + V W+A+I GY +     EAL +FR+M      P+  T+VS+L+ C
Sbjct: 337 GLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGC 396

Query: 359 ANLGALELG--------EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           A+ G L  G        +W+   +D+N   +D+ V NALIDMY KC   + A+ +F  + 
Sbjct: 397 ASAGTLLHGKETHCHAIKWILN-LDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIP 455

Query: 411 RKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRAS--IIPDEVTYVGVLSACTHTGMVD 466
            KD+   TWT +I G A +G  +++L++FSQML+    ++P+  T    L AC   G + 
Sbjct: 456 PKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR 515

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            GR+  A +              C++D+  ++G ++ A  V  NM  + N + W +L+  
Sbjct: 516 FGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLMTG 574

Query: 527 CRVHRDAEMA-----EMAAKQILELDPDNEAVYVLL 557
             +H   E A     EM   Q + L PD     V+L
Sbjct: 575 YGMHGRGEEALQIFYEM---QKVXLVPDGVTFVVVL 607


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/585 (39%), Positives = 343/585 (58%), Gaps = 52/585 (8%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  +      S+  V   LIS+ C    +D A  IF      ++  +NA+  G     
Sbjct: 58  QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           +F+ +   F  M R  + P  +T+  VL + A L D+ +G+  H  V +  +  +  +  
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRV 177

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           +L DMY   GE+GF L                               Q FD+ P+R+   
Sbjct: 178 SLVDMYVKIGELGFGL-------------------------------QLFDESPQRNKA- 205

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
                          E++ L+     + +RP++ T+VS L AC  +GAL++GE +  Y+ 
Sbjct: 206 ---------------ESILLW-----NGVRPNDLTVVSALLACTKIGALQVGERIHNYLS 245

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
            N  + +  +G AL+DMY KCG+++ A RVF E   KD  TW+ MI G AI+G  D++L 
Sbjct: 246 SNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQ 305

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
            F +M  A I PDEV ++ +L+AC+H+G VD+G  +F  M + + IEP   HY  +VDLL
Sbjct: 306 CFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLL 365

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
           GRAG L+EAL  I++MP+ P+ ++WGAL  ACR H++ EMAE+ A+++L+L+P +   YV
Sbjct: 366 GRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYV 425

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
            L N+YAA  RW++   +R ++ +RG++K PG S IE+ G VH FVAGD +H + +EI L
Sbjct: 426 FLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISL 485

Query: 616 KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
           KL+E+T+  K  GYMP+ + V  ++ EE+KE A+  HSEKLA+AFGLIS+ PG TIRIVK
Sbjct: 486 KLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVK 545

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH M K  S +  RE+I+RD  RFHHFK G+CSC DYW
Sbjct: 546 NLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 188/413 (45%), Gaps = 63/413 (15%)

Query: 14  TQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           + ET  I  I    ++ QL QIH+Q     L +N  V  +L++  CS K  + YA  +FR
Sbjct: 38  SPETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLK-SLDYALSIFR 96

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
               P++ ++N +I+G +     +  V  ++ ML+  +RPD  T PF+LK     + V  
Sbjct: 97  CFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGL 156

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK----DDVVTWNAMFS 189
           G+ LH  V+K G +   FV+ +L+  Y   GE+     +FD S +    + ++ WN    
Sbjct: 157 GRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWN---- 212

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
                                GV P  +T+V  L AC K+  L VG+R H Y+       
Sbjct: 213 ---------------------GVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQL 251

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           N  +  AL DMYA CG +  A  +F   K KD+++W+ ++ G+   G        FDQ  
Sbjct: 252 NRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHG-------CFDQ-- 302

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-E 368
                                 AL  F +M+++ I PDE   ++ILTAC++ G ++ G  
Sbjct: 303 ----------------------ALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLN 340

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAM 420
           + ++      ++  +     ++D+  + G +++A    + M +  D   W A+
Sbjct: 341 FFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGAL 393



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 152/370 (41%), Gaps = 41/370 (11%)

Query: 224 SACAKLKDLDVGKRAHRYVK--ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           S  AK   +    RAH   +  E   +P +   N L  ++    ++ F   +F N +   
Sbjct: 18  SPPAKTTTVTTTTRAHGPSRSPETHFIPLIHASNTLPQLHQIHAQI-FLHNLFSNSR--- 73

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V+  T +++   +   +D A   F      +  ++ A+I G    +RF  +++ F  M  
Sbjct: 74  VV--TQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLR 131

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
            +IRPD  T+  +L + A L  + LG  +   + K  ++ D FV  +L+DMY K G++  
Sbjct: 132 LSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGF 191

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
             ++F E  +++K                       S +L   + P+++T V  L ACT 
Sbjct: 192 GLQLFDESPQRNKAE---------------------SILLWNGVRPNDLTVVSALLACTK 230

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
            G +  G E   +    +G + N      +VD+  + G++  A  V      K + + W 
Sbjct: 231 IGALQVG-ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGK-DLLTWS 288

Query: 522 ALLGACRVHR--DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE----LRQ 575
            ++    +H   D  +      +   ++PD     V+   I  AC+   N  +       
Sbjct: 289 VMIWGWAIHGCFDQALQCFVKMKSAGINPDE----VIFLAILTACSHSGNVDQGLNFFES 344

Query: 576 MILDRGIKKT 585
           M LD  I+ T
Sbjct: 345 MRLDYSIEPT 354


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/734 (33%), Positives = 391/734 (53%), Gaps = 75/734 (10%)

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
           +G +  A +VF +IP P    +N +I+ YS        + +Y  ML   V P+ YTFPF+
Sbjct: 46  RGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFV 105

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           LK  +    +  G+ +H H    G  + +FV  ALI  Y  C     A  +F      DV
Sbjct: 106 LKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDV 165

Query: 182 VTWNAMFSGYKRVKQFDET-RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           V WNAM +GY     +      L    +R G+ P + T+V +L   A+   L  G   H 
Sbjct: 166 VAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHA 225

Query: 241 Y-----------------------------VKECKIVPNLILEN-----ALTDMYAACGE 266
           Y                             V  C++   + + N     AL   +  C  
Sbjct: 226 YCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDR 285

Query: 267 MGFALEIFGNIK----------------------------------------NKDVISWT 286
           M  A  +F ++                                         + D+ +  
Sbjct: 286 MTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGN 345

Query: 287 AIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
           ++++ Y   G ++ A   FD++  +D + + A++ GY++  +  EA  +F++MQ  N++P
Sbjct: 346 SLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQP 405

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           D  T+VS++ AC++L AL+ G      +    +  +  + N+LIDMY KCG ++ +++VF
Sbjct: 406 DIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVF 465

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
            +M  +D  +W  MI G  I+G G ++  +F  M      PD+VT++ +++AC+H+G+V 
Sbjct: 466 DKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVT 525

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           EG+ +F  MT ++GI P   HY CMVDLL R G L+EA + I++MP+K +  VWGALLGA
Sbjct: 526 EGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGA 585

Query: 527 CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTP 586
           CR+H++ ++ +  ++ I +L P+    +VLL NI++A  R+D   E+R +   +G KK+P
Sbjct: 586 CRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSP 645

Query: 587 GCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKE 646
           GCS IE+NG +H FV GD+SHP + +IY +LD +  D+K +GY  D S V  D+ EE+KE
Sbjct: 646 GCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKE 705

Query: 647 RAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRF 706
           +A+  HSEKLA+AFG++S     TI + KNLR+C DCH   K +++V +R +IVRD  RF
Sbjct: 706 KALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRF 765

Query: 707 HHFKHGSCSCKDYW 720
           HHFK+G CSC D+W
Sbjct: 766 HHFKNGQCSCGDFW 779



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 6/251 (2%)

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           KD   W   +  +I RGQ+ +ARQ FD++P  D   + A+I  Y     F  A+ L+R M
Sbjct: 31  KDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSM 90

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
               + P+++T   +L AC+ L  L  G  +  +     +  D+FV  ALID+Y +C   
Sbjct: 91  LYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARF 150

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML-RASIIPDEVTYVGVLSA 458
             A  VF +M  +D   W AM+ G A +G    ++     M  R  + P+  T V +L  
Sbjct: 151 GPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPL 210

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHY---GCMVDLLGRAGHLNEALEVIKNMPMKP 515
               G + +G    A   ++  ++ NE        ++D+  +  HL  A  V   M ++ 
Sbjct: 211 LAQHGALFQGTSVHA-YCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVR- 268

Query: 516 NSIVWGALLGA 526
           N + W AL+G 
Sbjct: 269 NEVTWSALIGG 279


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/709 (34%), Positives = 381/709 (53%), Gaps = 53/709 (7%)

Query: 57  FCCSEKGDMKYACKVFRKIP---RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP 113
           +C S  GD+  A  VF K P   R +V ++N MI G+S  +   + + ++  M     +P
Sbjct: 90  YCAS--GDITLARGVFEKAPVCMRDTV-MYNAMITGFSHNNDGYSAINLFCKMKHEGFKP 146

Query: 114 DNYTFPFLLKGFT-----RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE--- 165
           DN+TF  +L G           V+F    H   LK G      V NAL+S Y  C     
Sbjct: 147 DNFTFASVLAGLALVADDEKQCVQF----HAAALKSGAGYITSVSNALVSVYSKCASSPS 202

Query: 166 -VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD-------------------------- 198
            +  AR +FD   + D  +W  M +GY +   FD                          
Sbjct: 203 LLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYV 262

Query: 199 ------ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
                 E  ++   M   G+     T   V+ ACA    L +GK+ H YV   +   +  
Sbjct: 263 NRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDF-SFH 321

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
            +N+L  +Y  CG+   A  IF  +  KD++SW A+++GY++ G +  A+  F +M E++
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            + W  MI G        E L LF  M+     P ++     + +CA LGA   G+    
Sbjct: 382 ILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHA 441

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            + K    + +  GNALI MY KCG VE+A++VFR M   D  +W A+I  L  +GHG +
Sbjct: 442 QLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAE 501

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           ++D++ +ML+  I PD +T + VL+AC+H G+VD+GR+YF  M   + I P   HY  ++
Sbjct: 502 AVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLI 561

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLL R+G  ++A  VI+++P KP + +W ALL  CRVH + E+  +AA ++  L P+++ 
Sbjct: 562 DLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDG 621

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            Y+LL N++AA  +W+    +R+++ DRG+KK   CS IEM   VH F+  D SHP+ + 
Sbjct: 622 TYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEA 681

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           +Y+ L ++  +++ +GY+PD S V  DV  +  KE  +  HSEK+A+AFGL+   PG TI
Sbjct: 682 VYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTI 741

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI KNLR C DCH   + +S V  R++I+RD+ RFHHF++G CSC ++W
Sbjct: 742 RIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 135/511 (26%), Positives = 228/511 (44%), Gaps = 79/511 (15%)

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALI----------------------------- 157
           R  +++  + +H +++ FGF     + N LI                             
Sbjct: 26  RRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTT 85

Query: 158 --STYCLCGEVDMARGIFDVSY--KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
             S YC  G++ +ARG+F+ +     D V +NAM +G+           LF +M+ +G  
Sbjct: 86  MVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI--LENALTDMYAACGE----M 267
           P + T   VL+  A + D D  +    +    K     I  + NAL  +Y+ C      +
Sbjct: 146 PDNFTFASVLAGLALVAD-DEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLL 204

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER-DYVLWTAMIDGYLRV 326
             A ++F  I  KD  SWT ++TGY+  G  D+  +  + M +    V + AMI GY+  
Sbjct: 205 HSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNR 264

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI----------DK 376
             ++EAL + R M +S I  DEFT  S++ ACA  G L+LG+ V  Y+          D 
Sbjct: 265 GFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN 324

Query: 377 NKVK--------------------NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           + V                      D+   NAL+  Y   G + +A+ +F+EM  K+  +
Sbjct: 325 SLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           W  MI GLA NG G++ L +FS M R    P +  + G + +C   G    G++Y A + 
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQL- 443

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
           ++ G + + +    ++ +  + G + EA +V + MP   +S+ W AL+ A   H     A
Sbjct: 444 LKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCL-DSVSWNALIAALGQHGHGAEA 502

Query: 537 EMAAKQILE--LDPDNEAVYVLLCNIYAACN 565
               +++L+  + PD     + L  +  AC+
Sbjct: 503 VDVYEEMLKKGIRPDR----ITLLTVLTACS 529



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 158/347 (45%), Gaps = 48/347 (13%)

Query: 223 LSACAKLK--DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
           L  C  L+   L + +  H  +      P   + N L D+Y    E+ +A ++F  I   
Sbjct: 19  LRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEP 78

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFRE 338
           D I+ T +V+GY   G + +AR  F++ P   RD V++ AMI G+   N    A+ LF +
Sbjct: 79  DKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID--KNKVKNDIFVGNALIDMYCKC 396
           M+    +PD FT  S+L   A L A +  + V+ +    K+       V NAL+ +Y KC
Sbjct: 139 MKHEGFKPDNFTFASVLAGLA-LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKC 197

Query: 397 GD----VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD--------------------- 431
                 +  A++VF E+L KD+ +WT M+ G   NG+ D                     
Sbjct: 198 ASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAM 257

Query: 432 -----------KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
                      ++L+M  +M+ + I  DE TY  V+ AC   G++  G++  A +  +  
Sbjct: 258 ISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR-- 315

Query: 481 IEPNEAHY-GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            E    H+   +V L  + G  +EA  + + MP K + + W ALL  
Sbjct: 316 -EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSG 360



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 19/168 (11%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q H+Q +K+G  ++ +  N L+T   ++ G ++ A +VFR +P      WN +I    +
Sbjct: 437 QQYHAQLLKIGFDSSLSAGNALITM-YAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQ 495

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  V +Y +MLK  +RPD  T   +L   +    V+ G++         FDS   V
Sbjct: 496 HGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKY--------FDSMETV 547

Query: 153 QNA---------LISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSG 190
                       LI   C  G+   A  + + + +K     W A+ SG
Sbjct: 548 YRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSG 595


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 264/790 (33%), Positives = 401/790 (50%), Gaps = 88/790 (11%)

Query: 5   SSISPPSTLTQETPLISPIETCE-------SMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           SS  PP     E   ++    CE        M    +  ++    GL     + + LV F
Sbjct: 89  SSPEPP----DEGAYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVRF 144

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
                G++ +A +VF K+P   V  WN M+ GY ++   +  + +Y  ML + +RPD YT
Sbjct: 145 -----GEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYT 199

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           FP +L+          G+E+H HVL+FGF   V V NAL++ Y  CG++  AR +FD   
Sbjct: 200 FPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMA 259

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
             D ++WNAM +G+    + +   +LF  M    V P  +TI  V  A   L ++   K 
Sbjct: 260 VTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKE 319

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H +  +     ++   N+L  MY + G MG A +IF  ++ KD +SWTA+++GY   G 
Sbjct: 320 MHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGF 379

Query: 298 VDMARQYFDQM------PE---------------------------------RDYVLWTA 318
            D A + +  M      P+                                 R  V+  A
Sbjct: 380 PDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANA 439

Query: 319 MIDGYLRVNRFREALTLFREMQT------------------------------SNIRPDE 348
           +++ Y +     +A+ +F+ M                                 +++P+ 
Sbjct: 440 LLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHVKPNS 499

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T ++ L+ACA  GAL  G+ +  Y+ +  + ++ +V NAL+D+Y KCG    A   F  
Sbjct: 500 VTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSV 559

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
              KD  +W  M+ G   +G GD +L +F+QM+     PDEVT+V +L AC+  GMV +G
Sbjct: 560 HSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQG 619

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
            E F  MT +  I PN  HY CMVDLL R G L EA  +I  MP+KP++ VWGALL  CR
Sbjct: 620 WELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCR 679

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
           +HR  E+ E+AAK ILEL+P++ A +VLLC++Y    +W     +R+ + ++G+++  GC
Sbjct: 680 IHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGC 739

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERA 648
           S +E+ GV H F+  D+SHPQ KEI + L  +   +K  G+ P  S    +V E+D    
Sbjct: 740 SWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVSEDD---I 796

Query: 649 VYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHH 708
           +  HSE+LA+AFGLI++ PG TI + KN   C  CH + K +S +  RE+ VRD  + H 
Sbjct: 797 LCGHSERLAVAFGLINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHC 856

Query: 709 FKHGSCSCKD 718
           FK G CSC D
Sbjct: 857 FKDGDCSCGD 866



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 2/188 (1%)

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           +++S   PDE   V++   C    A++ G       D       + +GNA++ M  + G+
Sbjct: 87  LESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVRFGE 146

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           +  A RVF +M  +D F+W  M+ G    G  +++LD++ +ML A + PD  T+  VL  
Sbjct: 147 IWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRT 206

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C        GRE  A + ++ G          +V +  + G +  A +V   M +  + I
Sbjct: 207 CGGIPDWRMGREVHAHV-LRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVT-DCI 264

Query: 519 VWGALLGA 526
            W A++  
Sbjct: 265 SWNAMIAG 272


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/613 (37%), Positives = 353/613 (57%), Gaps = 41/613 (6%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           + +C++  Q+ QI +Q I  G   N  +  KLVT C + K  M YA ++F +IP P++ L
Sbjct: 108 MRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLK-RMTYARQLFDQIPDPNIAL 166

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN+M +GY++ +S++  V ++  M   D+RP+ +TFP +LK   +  A+  G+++HC ++
Sbjct: 167 WNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLI 226

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K GF  + FV   LI  Y   G V  A  IF   ++ +VV W +M +GY         R+
Sbjct: 227 KCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARR 286

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           LF     + V                                       +L N +   Y 
Sbjct: 287 LFDLAPERDV---------------------------------------VLWNIMVSGYI 307

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
             G+M  A ++F  + N+DV+ W  ++ GY   G V+     F++MPER+   W A+I G
Sbjct: 308 EGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGG 367

Query: 323 YLRVNRFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           Y     F E L  F+ M + S++ P++ T+V++L+ACA LGAL+LG+WV  Y + + +K 
Sbjct: 368 YAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKG 427

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
           +++VGNAL+DMY KCG +E A  VFR M  KD  +W  +I GLA++  G  +L++F QM 
Sbjct: 428 NVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMK 487

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
            A   PD +T++G+L ACTH G+V++G  YF  M   + I P   HYGCMVD+L RAG L
Sbjct: 488 NAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRL 547

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
            +A   ++ MP++ + ++W  LLGACR++++ E+AE+A ++++EL+P N A YV+L NIY
Sbjct: 548 EQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIY 607

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMT 621
               RW++   L+  + D G KK PGCS+IE+N  V EF + D+ HPQ +EIY  L  + 
Sbjct: 608 GDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLV 667

Query: 622 SDLKFVGYMPDIS 634
             L+  GY+PD++
Sbjct: 668 KVLRSFGYVPDLT 680


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/617 (38%), Positives = 359/617 (58%), Gaps = 43/617 (6%)

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
           +++ D Y    LL       AV  G+ +H H++K  +   V++   LI  Y  C  +  A
Sbjct: 7   EIKFDGYNM--LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCA 64

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229
           R +FD   + +VV+W AM SGY +     E   LF +M R    P   T   VLS+C   
Sbjct: 65  RHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGF 124

Query: 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289
              ++G++ H ++ +     ++ + ++L DMYA  G                        
Sbjct: 125 SGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAG------------------------ 160

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
                  ++  AR  F+ +PERD V  TA+I GY ++    EAL LF  +Q   +  +  
Sbjct: 161 -------RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYV 213

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
           T  S+LTA + L AL+ G+ V +++ + ++   + + N+LIDMY KCG++  A+++F  M
Sbjct: 214 TYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNM 273

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDEG 468
             +   +W AM+VG + +G G + + +F  M   + + PD VT++ VLS C+H G+ D+G
Sbjct: 274 PVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKG 333

Query: 469 REYFADM-----TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
            E F +M      I+ GIE    HYGC++DLLGRAG + EA E+IK MP +P + +WG+L
Sbjct: 334 LEMFDEMMNGGDEIEAGIE----HYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSL 389

Query: 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           LGACRVH +  + E    ++LE++P+N   YV+L N+YA+  RW++ R +R++++++ + 
Sbjct: 390 LGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVI 449

Query: 584 KTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEE 643
           K PG S IE++  +H F A D+SHP+ +E++LK+ E+    K  GY+PD S V  DV EE
Sbjct: 450 KEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEE 509

Query: 644 DKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDK 703
            KE+ +  HSEKLA+AFGLIS+  GV +R++KNLR+CVDCH  AK VS VY R+V +RDK
Sbjct: 510 QKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDK 569

Query: 704 TRFHHFKHGSCSCKDYW 720
            RFHH   G CSC DYW
Sbjct: 570 NRFHHVAGGICSCGDYW 586



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 213/435 (48%), Gaps = 50/435 (11%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           +++H+  IK   L    +  +L+     C   G  ++   VF ++   +V  W  MI GY
Sbjct: 30  QRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARH---VFDEMRERNVVSWTAMISGY 86

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           S+       + +++ ML+SD  P+ +TF  +L   T     E G+++H H+ K  +++ +
Sbjct: 87  SQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHI 146

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
           FV ++L+  Y   G +  ARG+F+   + DVV+  A+ SGY ++   +E  +LF  ++R+
Sbjct: 147 FVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQRE 206

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G+    VT   +L+A + L  LD GK+ H +V  C++   ++L+N+L DMY+ CG + +A
Sbjct: 207 GMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYA 266

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            +IF N+  + VISW A++ GY   G                               +  
Sbjct: 267 RKIFNNMPVRTVISWNAMLVGYSKHG-------------------------------KGI 295

Query: 331 EALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG--- 386
           E + LF+ M+  N ++PD  T +++L+ C++ G  + G  ++ + +     ++I  G   
Sbjct: 296 EVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKG--LEMFDEMMNGGDEIEAGIEH 353

Query: 387 -NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING---HGDKSLDMFSQMLR 442
              +ID+  + G VE+A     E+++K  F  TA I G  +     H + ++  F     
Sbjct: 354 YGCVIDLLGRAGRVEEA----FELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRL 409

Query: 443 ASIIPDEVTYVGVLS 457
             I P+      +LS
Sbjct: 410 LEIEPENAGNYVILS 424



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 8/118 (6%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           S       L++ +    ++   KQ+HS  ++  L     +QN L+    S+ G++ YA K
Sbjct: 210 SNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDM-YSKCGNLNYARK 268

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGV----LIYLDMLKSDVRPDNYTFPFLLKG 124
           +F  +P  +V  WN M+ GYS+   H  G+    L  L   ++ V+PD+ TF  +L G
Sbjct: 269 IFNNMPVRTVISWNAMLVGYSK---HGKGIEVVKLFKLMREENKVKPDSVTFLAVLSG 323


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/683 (35%), Positives = 357/683 (52%), Gaps = 63/683 (9%)

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRD 128
           ++F  +P      +N +I G+S   S    V +Y  +L+ + VRP   T   ++   +  
Sbjct: 100 RLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASAL 159

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYC--------------------------- 161
                G  +HC VL+ GF +  FV + L+  Y                            
Sbjct: 160 SDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLI 219

Query: 162 ----LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
                C  ++ A+G+F +    D +TW  M +G  +     E   +F  M  +GV     
Sbjct: 220 TGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQY 279

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T   +L+AC  L  L+ GK+ H Y+       N+ + +AL DMY+ C             
Sbjct: 280 TFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR------------ 327

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
                               + +A   F +M  R+ + WTAMI GY +     EA+  F 
Sbjct: 328 -------------------SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFS 368

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
           EMQ   I+PD+FT+ S++++CANL +LE G         + +   I V NAL+ +Y KCG
Sbjct: 369 EMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCG 428

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            +E A R+F EM   D+ +WTA++ G A  G   +++D+F +ML   + PD VT++GVLS
Sbjct: 429 SIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLS 488

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           AC+  G+V++G +YF  M   HGI P + HY CM+DL  R+G   EA E IK MP  P++
Sbjct: 489 ACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDA 548

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
             W  LL +CR+  + E+ + AA+ +LE DP N A YVLLC+++AA  +W     LR+ +
Sbjct: 549 FGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGM 608

Query: 578 LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF 637
            DR +KK PGCS I+    VH F A D+SHP +  IY KL+ + S +   GY PD+S V 
Sbjct: 609 RDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVL 668

Query: 638 LDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDRE 697
            DV + DK   +  HSEKLA+AFGLI     + IRIVKNLR+CVDCH   K +S +  R+
Sbjct: 669 HDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRD 728

Query: 698 VIVRDKTRFHHFKHGSCSCKDYW 720
           ++VRD  RFH F  G+CSC D+W
Sbjct: 729 ILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 128/472 (27%), Positives = 217/472 (45%), Gaps = 41/472 (8%)

Query: 130 AVEFGKELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            V     +HC +LK F      F+ N L++ Y   G +  AR +FD     ++ T NA+ 
Sbjct: 27  GVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALL 86

Query: 189 SGYKRVKQFDETRKLFGEMERK--------------------------------GVLPTS 216
           S     +   +  +LF  M  +                                 V PT 
Sbjct: 87  SALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTR 146

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
           +T+  ++   + L D  +G   H  V          + + L DMYA  G +  A  +F  
Sbjct: 147 ITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQE 206

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           ++ K V+ +  ++TG +    ++ A+  F  M +RD + WT M+ G  +     EAL +F
Sbjct: 207 MEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVF 266

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
           R M+   +  D++T  SILTAC  L ALE G+ +  YI +   ++++FVG+AL+DMY KC
Sbjct: 267 RRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKC 326

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
             +  A+ VFR M  ++  +WTAMIVG   N   ++++  FS+M    I PD+ T   V+
Sbjct: 327 RSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVI 386

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           S+C +   ++EG ++   + +  G+         +V L G+ G + +A  +   M    +
Sbjct: 387 SSCANLASLEEGAQFHC-LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-D 444

Query: 517 SIVWGALL-GACRVHRDAEMAEMAAKQILE-LDPDNEAVYVLLCNIYAACNR 566
            + W AL+ G  +  +  E  ++  K +   L PD     V    + +AC+R
Sbjct: 445 QVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDG----VTFIGVLSACSR 492



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 159/365 (43%), Gaps = 46/365 (12%)

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
            P   L N L   YA  G +  A  +F  + + ++ +  A+++   +   V    + F  
Sbjct: 45  APPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFAS 104

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFRE-MQTSNIRPDEFTIVSILTACANLGALEL 366
           MPERD V + A+I G+        ++ L+R  ++  ++RP   T+ +++   + L    L
Sbjct: 105 MPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRAL 164

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM---------------LR 411
           G  V   + +       FVG+ L+DMY K G +  A+RVF+EM               LR
Sbjct: 165 GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLR 224

Query: 412 ----------------KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
                           +D  TWT M+ GL  NG   ++LD+F +M    +  D+ T+  +
Sbjct: 225 CKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSI 284

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           L+AC     ++EG++  A +T +   E N      +VD+  +   +  A  V + M  + 
Sbjct: 285 LTACGALAALEEGKQIHAYIT-RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCR- 342

Query: 516 NSIVWGALL-----GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           N I W A++      AC        +EM   Q+  + PD+      L ++ ++C    + 
Sbjct: 343 NIISWTAMIVGYGQNACSEEAVRAFSEM---QMDGIKPDD----FTLGSVISSCANLASL 395

Query: 571 RELRQ 575
            E  Q
Sbjct: 396 EEGAQ 400



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 150/328 (45%), Gaps = 12/328 (3%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           ++ + KQIH+   +     N  V + LV    S+   ++ A  VFR++   ++  W  MI
Sbjct: 293 ALEEGKQIHAYITRTWYEDNVFVGSALVDMY-SKCRSIRLAEAVFRRMTCRNIISWTAMI 351

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
            GY +    +  V  + +M    ++PD++T   ++       ++E G + HC  L  G  
Sbjct: 352 VGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLM 411

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
             + V NAL++ Y  CG ++ A  +FD     D V+W A+ +GY +  +  ET  LF +M
Sbjct: 412 RYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKM 471

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENALTDMYAACGE 266
              G+ P  VT + VLSAC++   ++ G        K+  IVP       + D+Y+  G 
Sbjct: 472 LANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGR 531

Query: 267 MGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTAM 319
              A E    + +  D   W  +++    RG +++ +   + + E D      YVL  +M
Sbjct: 532 FKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSM 591

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPD 347
              +    ++ E   L R M+   ++ +
Sbjct: 592 ---HAAKGQWTEVAHLRRGMRDRQVKKE 616



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 37/223 (16%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L S I +C ++  L+   Q H   +  GL+   TV N LVT    + G ++ A ++F ++
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTL-YGKCGSIEDAHRLFDEM 440

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  W  ++ GY++    K  + ++  ML + ++PD  TF  +L   +R   VE G 
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGC 500

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           +         FDS                 +    GI  +   DD   +  M   Y R  
Sbjct: 501 DY--------FDS-----------------MQKDHGIVPI---DD--HYTCMIDLYSRSG 530

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           +F E  +   +M      P +     +LS+C    ++++GK A
Sbjct: 531 RFKEAEEFIKQMPHS---PDAFGWATLLSSCRLRGNMEIGKWA 570


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/489 (45%), Positives = 318/489 (65%), Gaps = 7/489 (1%)

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF--GNIKNKDVISWTAIVTGYINR 295
           AH    +   + + ++ N L  +Y A G +  A  +F      + D  SW  +V+GY   
Sbjct: 138 AHGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKC 197

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G ++ AR+ F +MPER  V W+AMID  +R   F EAL +F +M  +  RPD   + S+L
Sbjct: 198 GDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVL 257

Query: 356 TACANLGALELGEWVKTYIDK---NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
            ACA+LGALE G WV  ++      +  +++ +  AL+DMYCKCG +++A  VF  +  +
Sbjct: 258 KACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQ 317

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D   W AMI GLA+NGHG ++L++F +ML    +P+E T+V VL ACTHTG VDEG+E F
Sbjct: 318 DVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIF 377

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
             M   HGIEP   HYGC+ DLLGRAG L EA  V+ +MPM+P++  WGAL+ +C +H +
Sbjct: 378 RSMC-DHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNN 436

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE 592
             + E   K+++EL+PD+   YV+L N+YA    W++ + LR+M+ +RG KK  G S IE
Sbjct: 437 VGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIE 496

Query: 593 MNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQ 651
            NG+VHEF +GD  HPQT++IY  L++M   L+ +GY+ D S+V +D+  EEDK   +  
Sbjct: 497 WNGLVHEFRSGDTRHPQTRQIYALLEDMEQRLQLIGYVKDTSQVLMDMDDEEDKGNTLSY 556

Query: 652 HSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH 711
           HSE+LA+AFG++++   + IRIVKNLR+C DCH  AKLVS +Y RE+I+RD+ RFH F+ 
Sbjct: 557 HSERLALAFGILNTPRHMPIRIVKNLRVCRDCHVYAKLVSKLYQREIIMRDRHRFHLFRG 616

Query: 712 GSCSCKDYW 720
           G CSC D+W
Sbjct: 617 GVCSCNDFW 625



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 41/286 (14%)

Query: 146 FDSS------VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           FD+S       F  N ++S Y  CG+++ AR +F    +  +V+W+AM     R  +F E
Sbjct: 174 FDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSE 233

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE---CKIVPNLILENA 256
             ++F +M   G  P +V +  VL ACA L  L+ G+  HR++K     +   N++LE A
Sbjct: 234 ALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETA 293

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L DMY  CG M  A  +F  ++++DV+ W A++ G    G                    
Sbjct: 294 LVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGH------------------- 334

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
                        + AL LFR M      P+E T V +L AC + G ++ G+ +   +  
Sbjct: 335 ------------GKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCD 382

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
           + ++        L D+  + G +E+A+ V  +M +      W A++
Sbjct: 383 HGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALM 428



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 127/321 (39%), Gaps = 36/321 (11%)

Query: 26  CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS------------------------- 60
           C+ +      H Q +K G L +P V N L+   C+                         
Sbjct: 129 CDRLAAAGLAHGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWN 188

Query: 61  -------EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP 113
                  + GD++ A +VF ++P   +  W+ MI    R       + ++  M+ +  RP
Sbjct: 189 TMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRP 248

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS---VFVQNALISTYCLCGEVDMAR 170
           D      +LK      A+E G+ +H  +   G   S   V ++ AL+  YC CG +D A 
Sbjct: 249 DAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAW 308

Query: 171 GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK 230
            +FD     DVV WNAM  G           +LF  M   G +P   T V+VL AC    
Sbjct: 309 WVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTG 368

Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIV 289
            +D GK   R + +  I P       L D+    G +  A  +  ++  +   S W A++
Sbjct: 369 RVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALM 428

Query: 290 TGYINRGQVDMARQYFDQMPE 310
           +  +    V +  +   ++ E
Sbjct: 429 SSCLMHNNVGVGERVGKKLIE 449


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/588 (38%), Positives = 350/588 (59%), Gaps = 35/588 (5%)

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  +++ G     F+   L+ +   C  +D A  IF  ++  +V  + A+  G+     
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 110

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
           + +  +L+  M    +LP +  +  +L AC     L  G+  H    +  +  N ++   
Sbjct: 111 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 170

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE----RD 312
           + ++Y  CGE+G                                AR+ F++MPE    +D
Sbjct: 171 IMELYGKCGELG-------------------------------DARRVFEEMPEDVVAKD 199

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V WTAMIDG++R      AL  FR MQ  N+RP+EFTIV +L+AC+ LGALE+G WV +
Sbjct: 200 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS 259

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           Y+ K +++ ++FVGNALI+MY +CG +++AQ VF EM  +D  T+  MI GL++NG   +
Sbjct: 260 YMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQ 319

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           ++++F  M+   + P  VT+VGVL+AC+H G+VD G + F  MT  +G+EP   HYGCMV
Sbjct: 320 AIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMV 379

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGR G L EA ++I+ M M P+ I+ G LL AC++H++ E+ E  AK + +    +  
Sbjct: 380 DLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSG 439

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVLL ++YA+  +W    ++R  + + G++K PGCS IE+N  +HEF+ GD  HP+ + 
Sbjct: 440 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKER 499

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY KL+E+   L+  GY P+   V  D+ + +KE A+  HSE+LA+ +GLIS+ P   IR
Sbjct: 500 IYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIR 559

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++KNLR+C DCH   KL++ +  R+V+VRD+ RFH+F++G+CSC DYW
Sbjct: 560 VMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 224/453 (49%), Gaps = 54/453 (11%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           SNS+     +L Q+  +IS ++  + ++Q+  IH+Q I+ G   +P +  +L+   CS+ 
Sbjct: 20  SNSNPKSLKSLDQKQ-IISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLR-SCSKC 77

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
             + YA ++F+    P+V L+  +I G+    ++ + + +Y  ML   + PDNY    +L
Sbjct: 78  HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASIL 137

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD--- 179
           K     +A+  G+E+H   LK G  S+  V+  ++  Y  CGE+  AR +F+   +D   
Sbjct: 138 KACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVA 197

Query: 180 -DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D V W AM  G+ R ++ +   + F  M+ + V P   TIV VLSAC++L  L++G+  
Sbjct: 198 KDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWV 257

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY------ 292
           H Y+++ +I  NL + NAL +MY+ CG +  A  +F  +K++DVI++  +++G       
Sbjct: 258 HSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKS 317

Query: 293 ----------INR-------------------GQVDMARQYFDQMPERDYVL------WT 317
                     I R                   G VD   + F  M  RDY +      + 
Sbjct: 318 RQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMT-RDYGVEPQIEHYG 376

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-KTYIDK 376
            M+D   RV R  EA  L R M+ +   PD   + ++L+AC     LELGE V K   D+
Sbjct: 377 CMVDLLGRVGRLEEAYDLIRTMKMT---PDHIMLGTLLSACKMHKNLELGEQVAKVLEDR 433

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
            +  +  +V   L  +Y   G  ++A +V  +M
Sbjct: 434 GQADSGTYV--LLSHVYASSGKWKEAAQVRAKM 464


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/596 (39%), Positives = 356/596 (59%), Gaps = 5/596 (0%)

Query: 130 AVEFGKELHCHVLKFGFDSS--VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
           A+   + LH H+L     +S   F+ N LI  Y  CG +  AR +F+     +V TW   
Sbjct: 75  AISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVA 134

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVT--IVLVLSACAKLKDLDVGKRAHRYVKEC 245
            + +       E    F  M + G  P  VT  ++L   A      +D G+  HRY +  
Sbjct: 135 MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 194

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
            ++PN+++  A+  MY  CG +  A   F  ++ K+ ++W A++T Y   G+   A + F
Sbjct: 195 GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 254

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGAL 364
            +M + D V W AMI  Y +  R ++AL L+R M  T+++ P + T V+++  CA L AL
Sbjct: 255 REMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSAL 314

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           + G  +   +       ++ V NAL+ MY KCG +++A  VF  M  KD+ +W  +I   
Sbjct: 315 KQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSY 374

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A +GH D++L ++ +M    + P EVT+VG+LSAC+H G+V +G +YF  M   H I+P+
Sbjct: 375 AYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPS 434

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             H+GC++DLLGR G L EA  V+K+MP++ N++ W +LLGAC+ H D +    AA Q++
Sbjct: 435 VPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVV 494

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           +  P     YVLL NIYAA  RW +  ++R+++  RG+KK+PG S IE+  VVHEFV+GD
Sbjct: 495 DRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGD 554

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
            SHPQ +EIY++L +M  ++K +GY+PD S VF D+ EE+KE  +  HSEKLA+ +G + 
Sbjct: 555 SSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMV 614

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
                 +RIVKNLR+C+DCH   K +S +  R+++VRD  RFH F++GSCSC+DYW
Sbjct: 615 VPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 670



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 192/450 (42%), Gaps = 70/450 (15%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLL-TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           LI       ++   +++HS  + L    + P     L+     + G + YA ++F  +P 
Sbjct: 66  LIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFESMPS 125

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL--KGFTRDIAVEFGK 135
            +V  W   +  +S    H   ++ +  M +S  RPD  TF  +L         A++ G+
Sbjct: 126 RNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGR 185

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           E+H +    G   +V V  A+IS Y  CG +D AR  F+     + VTWNAM + YK   
Sbjct: 186 EIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDG 245

Query: 196 QFDETRKLFGEM--------------------------------ERKGVLPTSVTIVLVL 223
           +  E  +LF EM                                +   + P   T V V+
Sbjct: 246 RDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVI 305

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
             CA+L  L  G+  H  V+      NL++ NAL  MY  CG +  AL++F ++K KD I
Sbjct: 306 DVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEI 365

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           SW  I++ Y   G  D                               +AL L++EM    
Sbjct: 366 SWNTIISSYAYHGHSD-------------------------------QALLLYQEMDLQG 394

Query: 344 IRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
           ++P E T V +L+AC++ G +  G ++     D +++K  +     +ID+  + G + +A
Sbjct: 395 VKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEA 454

Query: 403 QRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
           + V + M ++ +   W +++   A   HGD
Sbjct: 455 ELVLKSMPIQANAVQWMSLLG--ACKTHGD 482



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 132/281 (46%), Gaps = 7/281 (2%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFL 121
           G  + A ++FR++       WN MI  Y++    K  + +Y  M   +D+ P   TF  +
Sbjct: 245 GRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTV 304

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           +       A++ G+ +H  V    FD+++ V NAL+  Y  CG +D A  +F      D 
Sbjct: 305 IDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDE 364

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG-KRAHR 240
           ++WN + S Y      D+   L+ EM+ +GV PT VT V +LSAC+    +  G    +R
Sbjct: 365 ISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYR 424

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVD 299
              + +I P++     + D+    G +  A  +  ++    + + W +++      G + 
Sbjct: 425 MQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLK 484

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
              +  DQ+ +R  V WT+   GY+ ++    A   +++++
Sbjct: 485 RGVRAADQVVDR--VPWTS--GGYVLLSNIYAAAGRWKDVE 521


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/744 (34%), Positives = 392/744 (52%), Gaps = 85/744 (11%)

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID--SHKNGVLIYLDMLKSDVRPDNYTFP 119
            G +  A  +F +IP P V  +N +I+ YS     +  +G+ +Y  ML+  V P+NYTFP
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           F LK  +       G+ +H H +  G  + +FV  AL+  Y  C  +  A  IF      
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 180 DVVTWNAMFSGYKRVKQFDE--TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           D+V WNAM +GY     +       L  +M+   + P + T+V +L   A+   L  G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 238 AHRY-VKEC---------KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
            H Y ++ C         K+   ++L  AL DMYA CG + +A  +F  +  ++ ++W+A
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 288 IVTGYINRGQVDMARQYFDQMPER------------------------------------ 311
           ++ G++   ++  A   F  M  +                                    
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 312 ----DYVLWTAMIDGYLRVNRFREALTLFREM---------------------------- 339
               D     +++  Y +     +A+ LF EM                            
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 340 ---QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
              Q  N+ PD  T+VS++ AC++L AL+ G      +    + ++  + NALIDMY KC
Sbjct: 430 KKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKC 489

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G ++ +++VF  M  +D  +W  MI G  I+G G ++  +F +M      PD VT++ +L
Sbjct: 490 GRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLL 549

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+H+G+V EG+ +F  M   +G+ P   HY CMVDLL R G L+EA E I++MP++ +
Sbjct: 550 SACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD 609

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
             VW ALLGACRV+++ ++ +  ++ I EL P+    +VLL NIY+A  R+D   E+R +
Sbjct: 610 VRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRII 669

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
              +G KK+PGCS IE+NG +H FV GD+SHPQ+ EIY +LD +   +K +GY PD S V
Sbjct: 670 QKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFV 729

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             D+ EE+KE+A+  HSEKLA+A+G++S     TI + KNLR+C DCH + K +S+V  R
Sbjct: 730 LQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRR 789

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
            +IVRD  RFHHFK+G CSC D+W
Sbjct: 790 AIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 135/326 (41%), Gaps = 32/326 (9%)

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA--LTLFREMQTSNIRPDEF 349
           +I  G +  A   FDQ+P  D   +  +I  Y   +    A  L L+R M    + P+ +
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
           T    L AC+ L     G  +  +     ++ D+FV  AL+DMY KC  +  A  +F  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 410 LRKDKFTWTAMIVGLAING--HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
             +D   W AM+ G A +G  H   +  +  QM    + P+  T V +L      G + +
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVD--LLGRA--------GHLNEALEVIKNMPMKPNS 517
           G    A   I+  + PN      + D  LLG A        G L  A  V   MP + N 
Sbjct: 247 GTSVHA-YCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NE 304

Query: 518 IVWGALLGA---CRVHRDAEM--AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR- 571
           + W AL+G    C     A +    M A+ +  L P + A      +   AC   D+ R 
Sbjct: 305 VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA------SALRACASLDHLRM 358

Query: 572 --ELRQMILDRGIKK--TPGCSMIEM 593
             +L  ++   G+    T G S++ M
Sbjct: 359 GEQLHALLAKSGVHADLTAGNSLLSM 384


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/470 (44%), Positives = 318/470 (67%), Gaps = 2/470 (0%)

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +EN+L   Y ACG++G A ++F  +  KDVISWT+IV  Y   G +  A + F + P +D
Sbjct: 179 VENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKD 238

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V WTAM+ GY +     +AL +F  M    +  DE ++   ++ACA LGAL    WV+ 
Sbjct: 239 MVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQE 298

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
             ++    N++ VG+ L+DMY KCG +++A +VF  M  K+ +T+++MI GLA +G   +
Sbjct: 299 IAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASE 358

Query: 433 SLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++ +F +M+ RA++ P+ VT++GVL+AC+H GMV EGR YFA M  ++GI P+  HY CM
Sbjct: 359 AIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACM 418

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAG ++EAL+++++M + P+  VWGALLGACR+H  +E+A++ A+ + +L+P++ 
Sbjct: 419 VDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESI 478

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE-MNGVVHEFVAGDKSHPQT 610
             YVLL NI A+  +W+   ++R ++  + +KK P  S+ E  +G+VH+F AGD +HP+T
Sbjct: 479 GNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRT 538

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
            EI   L E+ + LK  GY+P +S +  DV +E+KER +  HSEKLA++FGL++ G G T
Sbjct: 539 HEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCT 598

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IRI+KNLR+C DCH   +LVS V   E+IVRD  RFHHFK+G CSC  +W
Sbjct: 599 IRIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 31/308 (10%)

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           VL  GFD   FV+N+LI  Y  CG+V  AR +FD   + DV++W ++   Y R       
Sbjct: 168 VLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSA 227

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
            ++FG    K ++  +  +         +K L+V  R    + E  +V   I E +LT  
Sbjct: 228 EEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDR----MAELGMV---IDEVSLTGA 280

Query: 261 YAACGEMG------FALEI-----FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
            +AC ++G      +  EI     FGN    +V+  + +V  Y   G +D A + F  M 
Sbjct: 281 ISACAQLGALRRAAWVQEIAERTGFGN----NVVVGSGLVDMYAKCGLIDEASKVFYGMQ 336

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGE 368
           E++   +++MI G     R  EA+ LF+EM   +N+ P+  T + +LTAC++ G +  G 
Sbjct: 337 EKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGR 396

Query: 369 WVKTYIDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVG 423
           +   Y  + K K  I         ++D+  + G V++A  + R M +      W A++  
Sbjct: 397 Y---YFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGA 453

Query: 424 LAINGHGD 431
             I+G  +
Sbjct: 454 CRIHGKSE 461



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 34/213 (15%)

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT--------------------------- 416
           FV N+LI  Y  CGDV  A++VF EM+ KD  +                           
Sbjct: 178 FVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVK 237

Query: 417 ----WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
               WTAM+ G A N    K+L++F +M    ++ DEV+  G +SAC   G +     + 
Sbjct: 238 DMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRA-AWV 296

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
            ++  + G   N      +VD+  + G ++EA +V   M  K N   + +++     H  
Sbjct: 297 QEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEK-NVYTYSSMIAGLASHGR 355

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
           A  A    K+++    + E  +V    +  AC+
Sbjct: 356 ASEAIALFKEMVN-RANVEPNHVTFIGVLTACS 387



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 137/317 (43%), Gaps = 20/317 (6%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           E  LI     C  +   +++  + ++  +++  ++         +  GDM+ A +VF + 
Sbjct: 180 ENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSI-----VVAYTRSGDMRSAEEVFGRC 234

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P   +  W  M+ GY++       + ++  M +  +  D  +    +    +  A+    
Sbjct: 235 PVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAA 294

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
            +     + GF ++V V + L+  Y  CG +D A  +F    + +V T+++M +G     
Sbjct: 295 WVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHG 354

Query: 196 QFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLIL 253
           +  E   LF EM  R  V P  VT + VL+AC+    +  G+     +K+   I+P+   
Sbjct: 355 RASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADH 414

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVIS----WTAIVTGYINRGQVDMAR----QYF 305
              + D+    G +  AL++   +++  V      W A++      G+ ++A+      F
Sbjct: 415 YACMVDLLGRAGLVDEALDL---VRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLF 471

Query: 306 DQMPER--DYVLWTAMI 320
              PE   +YVL + ++
Sbjct: 472 KLEPESIGNYVLLSNIL 488


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/569 (40%), Positives = 335/569 (58%), Gaps = 41/569 (7%)

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N L+S +  CG++D AR +F      DV +WN M SG  +    +E   +F       ++
Sbjct: 81  NTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFR------IM 134

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P                                 V N +  NA+    A  G+MG A ++
Sbjct: 135 P---------------------------------VRNAVSWNAMVAALACSGDMGAAEDL 161

Query: 274 FGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           F N   K D I WTA+V+GY++ G V  A ++F  MP R+ V W A++ GY++ +R  +A
Sbjct: 162 FRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDA 221

Query: 333 LTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           L +F+ M + S ++P+  T+ S+L  C+NL AL  G  V  +  K  +  ++ VG +L+ 
Sbjct: 222 LRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLS 281

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MYCKCGD+  A +VF EM  KD   W AMI G A +G G +++ +F +M    ++PD +T
Sbjct: 282 MYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWIT 341

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
            + VL+AC HTG+ D G + F  M   + IEP   HY CMVDLL RAG L  A+ +I +M
Sbjct: 342 LLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSM 401

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P +P+   +G LL ACRV+++ E AE AA++++E DP N   YV L NIYA  N+W +  
Sbjct: 402 PFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVS 461

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            +R+ + D  + KTPG S +E+ GV HEF + D+ HPQ   I+ KLD +   +K +GY+P
Sbjct: 462 RVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVP 521

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           D+     DV +  K + + +HSEKLA+AFGLIS+ PG+T+RI KNLR+C DCH  AKL+S
Sbjct: 522 DLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLIS 581

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + DRE+I+RD TRFHHF+ G CSC DYW
Sbjct: 582 KIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 115/216 (53%), Gaps = 2/216 (0%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFP 119
           + G+++ A + F  +P  ++  WN ++ GY +     + + ++  M++ S V+P+  T  
Sbjct: 183 DTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLS 242

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L G +   A+ FG+++H   +K     +V V  +L+S YC CG+++ A  +FD     
Sbjct: 243 SVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK 302

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           D+V WNAM SGY +     +  KLF +M+ +GV+P  +T++ VL+AC      D G +  
Sbjct: 303 DIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCF 362

Query: 240 RYVKEC-KIVPNLILENALTDMYAACGEMGFALEIF 274
             ++E  KI P +   + + D+    G +  A+ + 
Sbjct: 363 ETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMI 398


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/690 (36%), Positives = 379/690 (54%), Gaps = 39/690 (5%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IH   +KLGL     V N +V +  S+ G +  A   F K    +V  WNTMI  +S ++
Sbjct: 270 IHGLAVKLGLSEEVMVNNAMV-YMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFS-LE 327

Query: 95  SHKN---GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
              N    +L  + +   +++ +  T   +L      + +   KELH +  +  F   V 
Sbjct: 328 GDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQH-VE 386

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           + NA I  Y  CG ++ A  +F       V +WNA+  G+ +     +   L  +M   G
Sbjct: 387 LSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSG 446

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL-TDMYAACGEMGFA 270
             P   TI  +L ACA LK L  GK  H YV          L N L TD +         
Sbjct: 447 QQPDWFTISSLLLACAHLKSLQYGKEIHGYV----------LRNGLETDFFVG------- 489

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
                          T++++ YI+ G+   AR  FD+M +++ V W AMI GY +     
Sbjct: 490 ---------------TSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPY 534

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           E+L LFR+  +  I+  E  IVS+  AC+ L AL LG+    Y+ K     D FVG ++I
Sbjct: 535 ESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSII 594

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMY K G ++++++VF  +  K+  +W A+IV   I+GHG ++++++ +M +   +PD  
Sbjct: 595 DMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRF 654

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           TY+G+L AC H G+V+EG +YF +M   + IEP   HY C++D+L RAG L++AL ++  
Sbjct: 655 TYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNE 714

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MP + ++ +W +LL +CR     E+ E  AK++LEL+PD    YVLL N+YA   +WD  
Sbjct: 715 MPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGV 774

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
           R +RQM+ + G++K  GCS IE+ G V+ FV GD   P++ EI +    +   +  +GY 
Sbjct: 775 RRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYK 834

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           P+ S V  +VGEE+K   +  HSEKLA++FGL+ +  G T+RI KNLR+C DCH  AKL+
Sbjct: 835 PNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLI 894

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S   +RE++VRD  RFHHF+ G CSC DYW
Sbjct: 895 SKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 156/599 (26%), Positives = 271/599 (45%), Gaps = 84/599 (14%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDI 129
           VF  +   ++  WN ++ GY+R   + + V +++D++  +D +PDN+TFP ++K     +
Sbjct: 101 VFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGIL 160

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF- 188
            V  G+ +H  V+K G    VFV NAL+  Y  CG VD A  +FD   + ++V+WN+M  
Sbjct: 161 DVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMIC 220

Query: 189 ----SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
               +G+ R   FD   ++ GE   +G+LP  VT+V +L  CA   ++D+G   H    +
Sbjct: 221 AFSENGFSR-DSFDLLMEMLGE---EGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVK 276

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
             +   +++ NA+  MY+ CG +  A   F    NK+V+SW  +++ +   G V+     
Sbjct: 277 LGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVN----- 331

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN--IRPDEFTIVSILTACANLG 362
                                     EA  L +EMQ     ++ +E TI+++L AC +  
Sbjct: 332 --------------------------EAFNLLQEMQIQGEEMKANEVTILNVLPACLDKL 365

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            L   + +  Y  ++  ++ + + NA I  Y KCG +  A++VF  +  K   +W A+I 
Sbjct: 366 QLRSLKELHGYSFRHCFQH-VELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIG 424

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A NG   K+L +  QM  +   PD  T   +L AC H   +  G+E      +++G+E
Sbjct: 425 GHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHG-YVLRNGLE 483

Query: 483 PNEAHYGCMVDLLGRAGHLNEA--LEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMA 539
            +   +     LL    H  +A    V+ +     N + W A++ G  +     E   + 
Sbjct: 484 TD---FFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALF 540

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFR---ELRQMILDRGIKKTP--GCSMIEM- 593
            K + E    +E   + + +++ AC++    R   E    +L     +    GCS+I+M 
Sbjct: 541 RKSLSEGIQSHE---IAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMY 597

Query: 594 --NGVVHE------------------FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
             +G + E                   +     H   KE      E+   +K VG MPD
Sbjct: 598 AKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAI----ELYERMKKVGQMPD 652



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 170/368 (46%), Gaps = 38/368 (10%)

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN-LILENALTDMYAACGEMGFAL 271
           L     I L+L AC   KD++ G+R H++V +     N  +L   L  MYA CG      
Sbjct: 40  LQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGS----- 94

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
                                     +D +R  FD M  ++ + W A++ GY R   + +
Sbjct: 95  -------------------------PLD-SRLVFDNMETKNLIQWNALVSGYTRNGLYGD 128

Query: 332 ALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
            + +F ++ + ++ +PD FT  S++ AC  +  + LGE +   + K  +  D+FVGNAL+
Sbjct: 129 VVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALV 188

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML-RASIIPDE 449
            MY KCG V++A +VF  M   +  +W +MI   + NG    S D+  +ML    ++PD 
Sbjct: 189 GMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDV 248

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA-LEVI 508
           VT V +L  C   G VD G      + ++ G+         MV +  + G+LNEA +  +
Sbjct: 249 VTVVTILPVCAGEGEVDIGMGIHG-LAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFV 307

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
           KN     N + W  ++ A  +  D   A    +++     + +A  V + N+  AC    
Sbjct: 308 KN--NNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKL 365

Query: 569 NFRELRQM 576
             R L+++
Sbjct: 366 QLRSLKEL 373



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 186/418 (44%), Gaps = 51/418 (12%)

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF-----VQNALISTYCLCGEVDMARGIFD 174
            LL+       +E G+ LH    KF  DS+ +     +   LI  Y +CG    +R +FD
Sbjct: 48  LLLQACGNQKDIETGRRLH----KFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFD 103

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLD 233
                +++ WNA+ SGY R   + +  K+F ++       P + T   V+ AC  + D+ 
Sbjct: 104 NMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVR 163

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
           +G+  H  V +  +V ++ + NAL  MY  CG +  A+++F  +   +++SW +++  + 
Sbjct: 164 LGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFS 223

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
             G    +R  FD + E                            +    + PD  T+V+
Sbjct: 224 ENG---FSRDSFDLLMEM---------------------------LGEEGLLPDVVTVVT 253

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           IL  CA  G +++G  +     K  +  ++ V NA++ MY KCG + +AQ  F +   K+
Sbjct: 254 ILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKN 313

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQM--LRASIIPDEVTYVGVLSACTHTGMVDEGRE- 470
             +W  MI   ++ G  +++ ++  +M      +  +EVT + VL AC     +   +E 
Sbjct: 314 VVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKEL 373

Query: 471 --YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
             Y      QH +E + A     +    + G LN A +V   +  K  S  W AL+G 
Sbjct: 374 HGYSFRHCFQH-VELSNA----FILAYAKCGALNSAEKVFHGIGDKTVS-SWNALIGG 425


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/716 (34%), Positives = 388/716 (54%), Gaps = 57/716 (7%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           E G M  A  +F K+      +WN +I+GY+     +  +  Y  M    +R DN+TFPF
Sbjct: 70  ESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPF 129

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           ++K     +A+  G+++H  ++K GFD  V+V N LI  Y   G +++A  +FD     D
Sbjct: 130 VIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRD 189

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           +V+WN+M SGY+       +   F EM R G       ++  L AC+    L  G   H 
Sbjct: 190 LVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHC 249

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-------------------- 280
            V   ++  +++++ +L DMY  CG++ +A  +F  I +K                    
Sbjct: 250 QVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIP 309

Query: 281 DVISW-----------------------------------TAIVTGYINRGQVDMARQYF 305
           DVI+                                    TA+V  Y   G++ +A   F
Sbjct: 310 DVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVF 369

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
           +QM E++ V W  M+  Y++  +++EAL +F+ +    ++PD  TI S+L A A L +  
Sbjct: 370 NQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRS 429

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            G+ + +YI K  + ++ F+ NA++ MY KCGD++ A+  F  M+ KD  +W  MI+  A
Sbjct: 430 EGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYA 489

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           I+G G  S+  FS+M      P+  T+V +L+AC+ +G++DEG  +F  M +++GI+P  
Sbjct: 490 IHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGI 549

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HYGCM+DLLGR G+L+EA   I+ MP+ P + +WG+LL A R H D  +AE+AA+ IL 
Sbjct: 550 EHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILS 609

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           L  DN   YVLL N+YA   RW++   ++ ++ ++G+ KT GCSM+++NG    F+  D+
Sbjct: 610 LKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDR 669

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF-LDVGEEDKERAVYQHSEKLAMAFGLIS 664
           SH  T  IY  LD +   +    Y+  +++   LDV ++      Y HS KLA+ FGLIS
Sbjct: 670 SHAHTNLIYDVLDILLKKIGEDIYLHSLTKFRPLDVAKKRGNSPEY-HSVKLAICFGLIS 728

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  G  + + KN R+C DCHR AK +S V  RE++V D   FHHF+ G CSC+DYW
Sbjct: 729 TAIGNPVIVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW 784



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 184/398 (46%), Gaps = 57/398 (14%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           +IS +  C   H L+   +IH Q I+  L  +  VQ  L+     + G + YA +VF +I
Sbjct: 228 MISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMY-GKCGKVDYAERVFNRI 286

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              ++  WN MI G    D                V PD  T   LL   ++  A+  GK
Sbjct: 287 YSKNIVAWNAMIGGMQEDDK---------------VIPDVITMINLLPSCSQSGALLEGK 331

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
            +H   ++  F   + ++ AL+  Y  CGE+ +A  +F+   + ++V+WN M + Y + +
Sbjct: 332 SIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNE 391

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
           Q+ E  K+F  +  + + P ++TI  VL A A+L     GK+ H Y+ +  +  N  + N
Sbjct: 392 QYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISN 451

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           A+  MYA CG++  A E F  +  KDV+SW  ++  Y                       
Sbjct: 452 AIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAY----------------------- 488

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
               I G+ R      ++  F EM+    +P+  T VS+LTAC+  G ++ G W   + +
Sbjct: 489 ---AIHGFGRT-----SIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEG-W--GFFN 537

Query: 376 KNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM 409
             KV+  I  G      ++D+  + G++++A+    EM
Sbjct: 538 SMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEM 575



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 125/253 (49%), Gaps = 2/253 (0%)

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +   + ++ T  + G++  G +  A   F++M   D  +W  +I GY     F+EA+
Sbjct: 50  FKPLARPNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAI 109

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
             +  M+   IR D FT   ++ AC  L AL +G+ V   + K     D++V N LIDMY
Sbjct: 110 DFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMY 169

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            K G +E A++VF EM  +D  +W +M+ G  I+G G  SL  F +MLR     D    +
Sbjct: 170 LKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMI 229

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
             L AC+    +  G E    + I+  +E +      ++D+ G+ G ++ A E + N   
Sbjct: 230 SALGACSIEHCLRSGMEIHCQV-IRSELELDIMVQTSLIDMYGKCGKVDYA-ERVFNRIY 287

Query: 514 KPNSIVWGALLGA 526
             N + W A++G 
Sbjct: 288 SKNIVAWNAMIGG 300



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 17/144 (11%)

Query: 4   NSSISPPS-TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           N  + P + T+    P ++ +    S  + KQIHS  +KLGL +N  + N +V +  ++ 
Sbjct: 405 NEPLKPDAITIASVLPAVAELA---SRSEGKQIHSYIMKLGLGSNTFISNAIV-YMYAKC 460

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD++ A + F  +    V  WNTMI  Y+     +  +  + +M     +P+  TF  LL
Sbjct: 461 GDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLL 520

Query: 123 K------------GFTRDIAVEFG 134
                        GF   + VE+G
Sbjct: 521 TACSISGLIDEGWGFFNSMKVEYG 544


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/599 (39%), Positives = 352/599 (58%), Gaps = 47/599 (7%)

Query: 135 KELHCHVLKFG--FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H H++  G  F +    +  LIS+  +      A  IF+      +  +N + S   
Sbjct: 26  KQVHAHMITTGLIFHTYPLSRILLISSTIV---FTHALSIFNHIPNPTIFLYNTLISSLA 82

Query: 193 RVKQFDETR-KLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVP 249
            +K        L+  +     L P   T   +  AC     L  G+  H +V K  +   
Sbjct: 83  NIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFLEPTC 142

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           +  ++ AL + YA CG++G                                 R  F+Q+ 
Sbjct: 143 DPFVQAALLNYYAKCGKVG-------------------------------ACRYLFNQIS 171

Query: 310 ERDYVLWTAMIDGYLR--------VNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
           + D   W +++  Y+         V+   E LTLF EMQ S I+ +E T+V++++ACA L
Sbjct: 172 KPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAEL 231

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
           GAL  G W   Y+ K+ +K + FVG ALIDMY KCG ++ A ++F ++  +D   + AMI
Sbjct: 232 GALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMI 291

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G AI+G+G ++LD+F +M    + PD+VT V  + +C+H G+V+EG + F  M   +G+
Sbjct: 292 GGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGV 351

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           EP   HYGC+VDLLGRAG L EA E + NMPMKPN+++W +LLGA RVH + E+ E+  K
Sbjct: 352 EPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLK 411

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
            +++L+P+    YVLL N+YA+ NRWD+ + +R+++ D GI K PG S++E+ G +HEF+
Sbjct: 412 HLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFL 471

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
            GDK+HP++KEIYLKL+EM+  L   G+ P   EV  D+ EE+KE A+  HSE+LA+AF 
Sbjct: 472 MGDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFA 531

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LI+S     IRI+KNLR+C DCH  +KL+S +Y+RE+IVRD+ RFHHFK G+CSC DYW
Sbjct: 532 LIASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 208/424 (49%), Gaps = 46/424 (10%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           P +  +E C+++  LKQ+H+  I  GL+ +    ++++    S      +A  +F  IP 
Sbjct: 11  PTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLI--SSTIVFTHALSIFNHIPN 68

Query: 78  PSVCLWNTMIKGYSRIDSHKN-GVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P++ L+NT+I   + I  H +    +Y  +L  + ++P+ +TFP L K       +  G+
Sbjct: 69  PTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGR 128

Query: 136 ELHCHVLKFGFDS-SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY--- 191
            LH HVLKF   +   FVQ AL++ Y  CG+V   R +F+   K D+ +WN++ S Y   
Sbjct: 129 ALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHN 188

Query: 192 -----KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
                + V    E   LF EM++  +    VT+V ++SACA+L  L  G  AH YV +  
Sbjct: 189 SGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHN 248

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
           +  N  +  AL DMY+ CG +  A ++F  + ++D + + A++ G+              
Sbjct: 249 LKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGF-------------- 294

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
                        I GY       +AL LF++M    + PD+ T+V  + +C+++G +E 
Sbjct: 295 ------------AIHGY-----GHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEE 337

Query: 367 G-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA-QRVFREMLRKDKFTWTAMIVGL 424
           G +  ++  +   V+  +     L+D+  + G + +A +RV    ++ +   W +++   
Sbjct: 338 GCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAA 397

Query: 425 AING 428
            ++G
Sbjct: 398 RVHG 401



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 149/335 (44%), Gaps = 33/335 (9%)

Query: 33  KQIHSQTIK-LGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
           + +H+  +K L    +P VQ  L+ +   C + G  +Y   +F +I +P +  WN+++  
Sbjct: 128 RALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRY---LFNQISKPDLASWNSILSA 184

Query: 90  YSRIDSHKNGVL------------IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
           Y     H +G +            ++++M KS ++ +  T   L+       A+  G   
Sbjct: 185 YV----HNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWA 240

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H +VLK     + FV  ALI  Y  CG +D+A  +FD     D + +NAM  G+      
Sbjct: 241 HVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYG 300

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILENA 256
            +   LF +M  +G+ P  VT+V+ + +C+ +  ++ G      +KE   + P L     
Sbjct: 301 HQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGC 360

Query: 257 LTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQM----PER 311
           L D+    G +  A E   N+  K + + W +++      G +++       +    PE 
Sbjct: 361 LVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPET 420

Query: 312 --DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
             +YVL + M   Y  +NR+ +   + + M+   I
Sbjct: 421 SGNYVLLSNM---YASINRWDDVKRVRKLMKDHGI 452


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/716 (34%), Positives = 384/716 (53%), Gaps = 43/716 (6%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+ +T    L+  +  C ++ Q + IH    + GL     V   L +   +  G +  A 
Sbjct: 226 PARIT----LVIALTVCATIRQAQAIHFIVRESGLEQTLVVSTALAS-AYARLGHLYQAK 280

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           +VF +     V  WN M+  Y++        L++  ML   + P   T   L+   T   
Sbjct: 281 EVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVT---LVNASTGCS 337

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           ++ FG+ +H   L+ G D  + + NAL+  Y  CG  + AR +F      + V+WN M +
Sbjct: 338 SLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFK-RIPCNAVSWNTMIA 396

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA----KLKDLDVGKRAHRYVKEC 245
           G  +  Q     +LF  M+ +G+ P   T + +L A A    + + +  G++ H  +  C
Sbjct: 397 GSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSC 456

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
                  +  A+  MYA+CG +  A   F                    RG ++      
Sbjct: 457 GYASEPAIGTAVVKMYASCGAIDEAAASF-------------------QRGAME------ 491

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
                 D V W A+I    +    + AL  FR M    + P++ T V++L ACA   AL 
Sbjct: 492 ---DRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALT 548

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGL 424
            GE V  ++  + +++++FV  AL  MY +CG +E A+ +F ++ + +D   + AMI   
Sbjct: 549 EGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAY 608

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           + NG   ++L +F +M +    PDE ++V VLSAC+H G+ DEG E F  M   +GI P+
Sbjct: 609 SQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPS 668

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
           E HY C VD+LGRAG L +A E+I+ M +KP  +VW  LLGACR +RD +   +A   + 
Sbjct: 669 EDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVR 728

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           ELDP +E+ YV+L NI A   +WD   E+R  +  RG++K  G S IE+   VHEFVAGD
Sbjct: 729 ELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGD 788

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           +SHP+++EIY +L+ + ++++ +GY+PD   V   V E +KER + QHSE+LA+A G++S
Sbjct: 789 RSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMS 848

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S    T+R++KNLR+C DCH   K +S + ++E++VRD  RFHHF  GSCSC DYW
Sbjct: 849 SSTD-TVRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 157/660 (23%), Positives = 280/660 (42%), Gaps = 107/660 (16%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CS 60
           S+S  + P+ L +   L+        + Q ++IH++ + LGL     + N L+     C 
Sbjct: 22  SSSGATRPAHLVR---LLRAAGDDRLLSQGRRIHARIVSLGL--EEELGNHLLRLYLKCE 76

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
             GD++   +VF ++       W T+I  Y+     K  + ++  M +  VR D  TF  
Sbjct: 77  SLGDVE---EVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLA 133

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +LK   R   +  G+ +H  +++ G      + N L+  Y  CG V  A  +F+   + D
Sbjct: 134 VLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFE-KMERD 192

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           +V+WNA  +   +        +LF  M+ +GV P  +T+V+ L+ CA ++     +  H 
Sbjct: 193 LVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQ---AQAIHF 249

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
            V+E  +   L++  AL   YA  G +  A E+F     +DV+SW A++  Y   G +  
Sbjct: 250 IVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSE 309

Query: 301 ARQYFDQM------P------------------------------ERDYVLWTAMIDGYL 324
           A   F +M      P                              +RD VL  A++D Y 
Sbjct: 310 AALLFARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYT 369

Query: 325 RV------------------------------NRFREALTLFREMQTSNIRPDEFTIVSI 354
           R                                + + A+ LF+ MQ   + P   T +++
Sbjct: 370 RCGSPEEARHLFKRIPCNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNL 429

Query: 355 LTACAN----LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           L A A+      A+  G  + + I      ++  +G A++ MY  CG +++A   F+   
Sbjct: 430 LEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGA 489

Query: 411 ---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
              R D  +W A+I  L+ +GHG ++L  F +M    + P+++T V VL AC     + E
Sbjct: 490 MEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTE 549

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
           G E   D     G+E N      +  + GR G L  A E+ + + ++ + +++ A++ A 
Sbjct: 550 G-EIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA- 607

Query: 528 RVHRDAEMAEMAAKQILELD-----PDNEAVYVLLCNIYAACNR-------WDNFRELRQ 575
             +    +A  A K    +      PD ++      ++ +AC+        W+ FR +RQ
Sbjct: 608 --YSQNGLAGEALKLFWRMQQEGSRPDEQS----FVSVLSACSHGGLADEGWEIFRSMRQ 661



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 128/284 (45%), Gaps = 12/284 (4%)

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
           + F ++  RD   WT +I  Y    + + A+ +F  MQ   +R D  T +++L ACA LG
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            L  G  +  +I ++ +K    + N L+ +Y  CG V  A  +F +M R D  +W A I 
Sbjct: 143 DLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKMER-DLVSWNAAIA 201

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
             A +G    +L++F +M    + P  +T V  L+ C          +    +  + G+E
Sbjct: 202 ANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQA----QAIHFIVRESGLE 257

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD-AEMAEMAAK 541
                   +     R GHL +A EV  +   + + + W A+LGA   H   +E A + A+
Sbjct: 258 QTLVVSTALASAYARLGHLYQAKEVF-DRAAERDVVSWNAMLGAYAQHGHMSEAALLFAR 316

Query: 542 QILE-LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
            + E + P      V L N    C+     R +    L++G+ +
Sbjct: 317 MLHEGISPSK----VTLVNASTGCSSLRFGRMIHGCALEKGLDR 356


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/660 (36%), Positives = 376/660 (56%), Gaps = 39/660 (5%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A  +F +IP+P +  +NT+I  Y+      + + ++ +M +  +  D +TF  ++     
Sbjct: 93  AHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCN 152

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD--DVVTWN 185
            + +   ++LH      GFDS V V+N+L++ Y   G ++ A  +F+   ++  D V+WN
Sbjct: 153 HVGLI--RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWN 210

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           +M   Y + K+  +   L+ +M  +G      T+  VL+  + ++DL  G + H    + 
Sbjct: 211 SMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKT 270

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
               N  + + L DMYA CG                                +  +R+ F
Sbjct: 271 GFNKNRHVGSGLIDMYAKCG------------------------------AGMSESRKVF 300

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFR-EALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           +++   D V+W  MI GY +      EAL  FR+MQ +   PD+ + V  ++AC+NL + 
Sbjct: 301 EEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSP 360

Query: 365 ELGEWVKTYIDKNKV-KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
             G+       K+++  N I V NAL+ MY KCG+++ A+++F+ M + +  T  ++I G
Sbjct: 361 SQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAG 420

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            A +G G +SL++F QML ASI P  +T V +LSAC HTG V+EG++YF  M    GIEP
Sbjct: 421 YAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEP 480

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              HY CM+DLLGRAG L+EA  +I  MP  P S  W ALLGACR + + E+AE AA Q 
Sbjct: 481 EAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQF 540

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           L+L+P N   Y++L ++Y+A  +W+    +R+++ DRGI+K PGCS IE+N  VH FVA 
Sbjct: 541 LQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAE 600

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL---DVGEEDKERAVYQHSEKLAMAF 660
           D SHP+ KEI++ LDEM   +K  GY+PD+   F+   + GE++KE  +  HSEKLA+AF
Sbjct: 601 DNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAF 660

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           GL+ +  G  + +VKNLR+C DCH   K +S +  R++ VRD  RFH F+ G CSC DYW
Sbjct: 661 GLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 197/439 (44%), Gaps = 56/439 (12%)

Query: 26  CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP---RPSVCL 82
           C  +  ++Q+HS     G  +  +V+N L+T+  S+ G ++ A  VF  +    R  V  
Sbjct: 151 CNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTY-YSKNGILEEAEMVFNGMGEEVRDEVS- 208

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN+MI  Y +       + +Y DM+      D +T   +L  F+    +  G + H   +
Sbjct: 209 WNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAI 268

Query: 143 KFGFDSSVFVQNALISTYCLCGE-VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD-ET 200
           K GF+ +  V + LI  Y  CG  +  +R +F+     D+V WN M SGY + K+   E 
Sbjct: 269 KTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEA 328

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI-LENALTD 259
            + F +M+R G  P   + V  +SAC+ L     GK+ H    + +I  N I + NAL  
Sbjct: 329 LECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVT 388

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY+ CG +  A ++F  +   + ++  +I+ GY   G                       
Sbjct: 389 MYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGT-------------------- 428

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
                      E+L LF +M  ++I P   T+VSIL+ACA+ G +E G   K Y +  K 
Sbjct: 429 -----------ESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEG---KKYFNMMK- 473

Query: 380 KNDIFV-------GNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH-- 429
             DIF         + +ID+  + G + +A+R+   M        W A++      G+  
Sbjct: 474 --DIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNME 531

Query: 430 -GDKSLDMFSQMLRASIIP 447
             +K+ + F Q+   + +P
Sbjct: 532 LAEKAANQFLQLEPTNAVP 550



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 201/424 (47%), Gaps = 32/424 (7%)

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           +F  +LK    +  +  GK LH   LK    SS ++ N  I  Y  C  +  A   F+ +
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
           ++ +V ++NA+ + Y +         LF ++ +    P  V+   +++A A   D     
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQ----PDLVSFNTLINAYADRGDTLSAL 125

Query: 237 RAHRYVKECKIVPN-LILENALTDMYAACGEMGFALEI----FGNIKNKDVISWTAIVTG 291
                ++E  +V +       +T   A C  +G   ++    F +  +  V    +++T 
Sbjct: 126 SLFGEMREMGLVMDGFTFSGVIT---ACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTY 182

Query: 292 YINRGQVDMARQYFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF 349
           Y   G ++ A   F+ M E  RD V W +MI  Y +  R  +AL L+R+M       D F
Sbjct: 183 YSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMF 242

Query: 350 TIVSILTACANL----GALEL-GEWVKTYIDKNKVKNDIFVGNALIDMYCKCG-DVEKAQ 403
           T+ S+LT  + +    G L+   + +KT  +KN+      VG+ LIDMY KCG  + +++
Sbjct: 243 TLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNR-----HVGSGLIDMYAKCGAGMSESR 297

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGH-GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           +VF E+   D   W  MI G + N     ++L+ F QM RA   PD+ ++V  +SAC++ 
Sbjct: 298 KVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNL 357

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHY-GCMVDLLGRAGHLNEALEVIKNMPMKP----NS 517
               +G+++ A + ++  I  N+      +V +  + G+L +A ++ + MP       NS
Sbjct: 358 SSPSQGKQFHA-LAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNS 416

Query: 518 IVWG 521
           I+ G
Sbjct: 417 IIAG 420



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 139/315 (44%), Gaps = 21/315 (6%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L +C   KDL  GK  H    +  I  +  L N    +Y+ C  +  A   F      +
Sbjct: 14  ILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPN 73

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V S+ A++  Y     + +A   FDQ+P+ D V +  +I+ Y        AL+LF EM+ 
Sbjct: 74  VFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMRE 133

Query: 342 SNIRPDEFTIVSILTACAN-------LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
             +  D FT   ++TAC N       L +L       +Y+          V N+L+  Y 
Sbjct: 134 MGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVS---------VKNSLLTYYS 184

Query: 395 KCGDVEKAQRVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           K G +E+A+ VF  M    +D+ +W +MIV    +  G K+L ++  M+      D  T 
Sbjct: 185 KNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTL 244

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH-LNEALEVIKNM 511
             VL+  +    +  G ++ A   I+ G   N      ++D+  + G  ++E+ +V + +
Sbjct: 245 ASVLTTFSCVEDLSGGLQFHAK-AIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEI 303

Query: 512 PMKPNSIVWGALLGA 526
               + +VW  ++  
Sbjct: 304 -CGSDLVVWNTMISG 317



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 93/202 (46%), Gaps = 9/202 (4%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNP-TVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           IS      S  Q KQ H+  +K  + +N  +V N LVT   S+ G+++ A K+F+++P+ 
Sbjct: 351 ISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTM-YSKCGNLQDARKLFQRMPQH 409

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           +    N++I GY++       + ++  ML + + P + T   +L        VE GK+ +
Sbjct: 410 NTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKK-Y 468

Query: 139 CHVLK--FGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSG---YK 192
            +++K  FG +      + +I      G++  A  + D + +      W A+      Y 
Sbjct: 469 FNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYG 528

Query: 193 RVKQFDETRKLFGEMERKGVLP 214
            ++  ++    F ++E    +P
Sbjct: 529 NMELAEKAANQFLQLEPTNAVP 550


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/687 (34%), Positives = 396/687 (57%), Gaps = 34/687 (4%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IH   +K     +  V N L+    ++ G M+ A +VF  +       WNT++ G  + +
Sbjct: 270 IHGAALKSNHFADVYVANALIAMY-AKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNE 328

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
            +++ +  + DM  S  +PD  +   L+    R   +  GKE+H + ++ G DS++ + N
Sbjct: 329 LYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGN 388

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
            LI  Y  C  V      F+  ++ D+++W  + +GY + +   E   LF +++ KG+  
Sbjct: 389 TLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDV 448

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
             + I  VL AC+ LK  +  +  H YV + + + +++L+NA+ ++Y   GE+G      
Sbjct: 449 DPMMIGSVLRACSGLKSRNFIREIHGYVFK-RDLADIMLQNAIVNVY---GEVG------ 498

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
                                   D AR+ F+ +  +D V WT+MI   +      EAL 
Sbjct: 499 ----------------------HRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALE 536

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LF  ++ +NI+PD   I+S L+A ANL +L+ G+ +  ++ +     +  + ++L+DMY 
Sbjct: 537 LFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYA 596

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
            CG VE ++++F  + ++D   WT+MI    ++G G++++ +F +M   ++IPD +T++ 
Sbjct: 597 CCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLA 656

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           +L AC+H+G++ EG+ +F  M   + +EP   HY CMVDLL R+  L EA + +++MP+K
Sbjct: 657 LLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIK 716

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
           P+S VW ALLGAC +H + E+ E+AAK++L+ D  N   Y L+ NI+AA  RW++  E+R
Sbjct: 717 PSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVR 776

Query: 575 QMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL-KFVGYMPDI 633
             +   G+KK PGCS IE++  +H F+A DKSHPQT +IYLKL + T  L K  GY+   
Sbjct: 777 LRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQT 836

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
             VF +V EE+K + +Y+HSE+LA+ +GL+ +  G +IRI KNLR+C DCH   K+ S V
Sbjct: 837 KFVFHNVSEEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEV 896

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
             R ++VRD  RFHHF+ G CSC D+W
Sbjct: 897 SQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 145/541 (26%), Positives = 247/541 (45%), Gaps = 62/541 (11%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           + S   ++ PS L     L+  ++ C   +++ Q +Q+H++ +K  L  +  +  KL+  
Sbjct: 33  LLSTHPLATPSRLEHAHSLL--LDLCVAVKALPQGQQLHARLLKSHL--SAFLATKLLHM 88

Query: 58  CCSEK-GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
              EK G +K A KVF ++   ++  WN M+  +     +   + +Y +M    V  D  
Sbjct: 89  --YEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDAC 146

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-- 174
           TFP +LK          G E+H   +K GF   VFV NALI+ Y  CG++  AR +FD  
Sbjct: 147 TFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGI 206

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
           +  K+D V+WN++ S +    +  E   LF  M+  GV   + T V  L        + +
Sbjct: 207 MMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL 266

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G   H    +     ++ + NAL  MYA CG M                           
Sbjct: 267 GMGIHGAALKSNHFADVYVANALIAMYAKCGRM--------------------------- 299

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
               + A + F  M  RDYV W  ++ G ++   +R+AL  FR+MQ S  +PD+ +++++
Sbjct: 300 ----EDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNL 355

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           + A    G L  G+ V  Y  +N + +++ +GN LIDMY KC  V+     F  M  KD 
Sbjct: 356 IAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDL 415

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY--- 471
            +WT +I G A N    +++++F ++    +  D +    VL AC+     +  RE    
Sbjct: 416 ISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGY 475

Query: 472 -----FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
                 AD+ +Q+ I          V++ G  GH + A    +++  K + + W +++  
Sbjct: 476 VFKRDLADIMLQNAI----------VNVYGEVGHRDYARRAFESIRSK-DIVSWTSMITC 524

Query: 527 C 527
           C
Sbjct: 525 C 525



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 181/420 (43%), Gaps = 69/420 (16%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTF---CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
           K++H+  I+ GL +N  + N L+     CC  K  M YA   F  +    +  W T+I G
Sbjct: 369 KEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVK-HMGYA---FECMHEKDLISWTTIIAG 424

Query: 90  YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
           Y++ + H   + ++  +    +  D      +L+  +   +  F +E+H +V K    + 
Sbjct: 425 YAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-AD 483

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
           + +QNA+++ Y   G  D AR  F+     D+V+W +M +         E  +LF  +++
Sbjct: 484 IMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ 543

Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
             + P S+ I+  LSA A L  L  GK  H ++          + ++L DMYA CG +  
Sbjct: 544 TNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVEN 603

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           + ++F ++K +D+I WT+++      G  +                              
Sbjct: 604 SRKMFHSVKQRDLILWTSMINANGMHGCGN------------------------------ 633

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGAL--------------ELGEWVKTYID 375
            EA+ LF++M   N+ PD  T +++L AC++ G +              +L  W + Y  
Sbjct: 634 -EAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYA- 691

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSL 434
                        ++D+  +   +E+A +  R M ++     W A++    I  H +K L
Sbjct: 692 ------------CMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHI--HSNKEL 737



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 2/211 (0%)

Query: 27  ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
           +S + +++IH    K  L  +  +QN +V     E G   YA + F  I    +  W +M
Sbjct: 464 KSRNFIREIHGYVFKRDL-ADIMLQNAIVNVY-GEVGHRDYARRAFESIRSKDIVSWTSM 521

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           I            + ++  + +++++PD+      L       +++ GKE+H  +++ GF
Sbjct: 522 ITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGF 581

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
                + ++L+  Y  CG V+ +R +F    + D++ W +M +        +E   LF +
Sbjct: 582 FLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKK 641

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           M  + V+P  +T + +L AC+    +  GKR
Sbjct: 642 MTDENVIPDHITFLALLYACSHSGLMVEGKR 672


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/518 (44%), Positives = 319/518 (61%), Gaps = 31/518 (5%)

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
            F  M R   LP   T   +L ACA      VG +AH    +     +  + N L  MY+
Sbjct: 133 FFPLMLRSATLPNKFTFPFLLKACAAFPG--VGVQAHAAALKFGFTTDQYVSNTLIHMYS 190

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
                 F  E  G+                        AR  FD+M +   V W+AMI G
Sbjct: 191 C-----FGGEFLGD------------------------ARNVFDRMAKSSAVTWSAMIGG 221

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           Y+R     +A+ LFREMQ S +RPDE T++ +L A A+LGALEL  WV  +++K  +   
Sbjct: 222 YVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKS 281

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           + + NALID   KCGD++ A  VF+ M  +   +WT++I  LA+ G G +++ +F +M  
Sbjct: 282 VTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKT 341

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
           A + PD+V ++GVL+AC+H GMVDEG  YF  M + +GI+P   HYGCMVD+ GRAG + 
Sbjct: 342 AGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVE 401

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
            A+E +  MPMKPN I+W  L+ ACR H   E+ E   + +L   P +EA YV+L N+YA
Sbjct: 402 RAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYA 461

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
              RW    E+R+ +  RGIKK PGCS++E++G VHEF+AGD+SHPQ KEIY+ ++EM  
Sbjct: 462 LTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMAR 521

Query: 623 DLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
           +L+  G++   SEV LD+ EEDKE A+  HSEKLA+AF L+ + PG  +R+VKNLR+C D
Sbjct: 522 ELRRAGHISATSEVLLDLDEEDKEVALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSD 581

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           CH   K +S+VY+RE+IVRD++RFH FK+GSCSC D+W
Sbjct: 582 CHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 144/324 (44%), Gaps = 18/324 (5%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           Q H+  +K G  T+  V N L+  + C     +  A  VF ++ + S   W+ MI GY R
Sbjct: 165 QAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVR 224

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                + V ++ +M  S VRPD  T   +L       A+E  + +   V K G   SV +
Sbjct: 225 SGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTL 284

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NALI     CG++D A  +F    +  +V+W ++        +  E   +F EM+  GV
Sbjct: 285 CNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGV 344

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV----PNLILENALTDMYAACGEMG 268
            P  V  + VL+AC+    +D G   + Y +  ++     P +     + DM+   G + 
Sbjct: 345 RPDDVAFIGVLTACSHAGMVDEG---YGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVE 401

Query: 269 FALEIFGNIKNK-DVISWTAIVTGYINRGQVDMA----RQYFDQMP--ERDYVLWTAMID 321
            A+E    +  K + I W  +V      G++++     R   ++ P  E +YV+ + +  
Sbjct: 402 RAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNV-- 459

Query: 322 GYLRVNRFREALTLFREMQTSNIR 345
            Y    R++E   + REM    I+
Sbjct: 460 -YALTRRWKEKSEIRREMSKRGIK 482



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 9/202 (4%)

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
           R R A + F  M  S   P++FT   +L ACA      +G        K     D +V N
Sbjct: 127 RLRAA-SFFPLMLRSATLPNKFTFPFLLKACAAFPG--VGVQAHAAALKFGFTTDQYVSN 183

Query: 388 ALIDMY-CKCGD-VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            LI MY C  G+ +  A+ VF  M +    TW+AMI G   +G    ++ +F +M  + +
Sbjct: 184 TLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGV 243

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
            PDEVT +GVL+A    G ++  R +      + GI  +      ++D L + G L+ A+
Sbjct: 244 RPDEVTMIGVLAAAADLGALELAR-WVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAM 302

Query: 506 EVIKNMPMKPNSIV-WGALLGA 526
            V +   MK  +IV W +++ A
Sbjct: 303 AVFQG--MKERTIVSWTSVIDA 322


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 206/441 (46%), Positives = 295/441 (66%)

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           K ++S TA++T Y   G +D AR  FD + ERD + W  MIDGY +     E L LFR+M
Sbjct: 4   KSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQM 63

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
             + +RP+E T++++L+AC   GALE G WV +YI+ N +  ++ VG +LIDMY KCG +
Sbjct: 64  LNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSL 123

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           E A+ VF  +  KD   W +M+VG A++G    +L +F +M      P ++T++GVL+AC
Sbjct: 124 EDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNAC 183

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H G+V EG ++F  M  ++GIEP   HYGCMV+LLGRAG+L EA E++KNM +  + ++
Sbjct: 184 SHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVL 243

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           WG LLGACR+H +  + E  A+ ++  +  N   YVLL NIYAA   W+    +R ++ +
Sbjct: 244 WGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKE 303

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
            G +K PGCS IE+N  VHEF+AGD  HP+++EIY  L+E+   LK  GY P    V  D
Sbjct: 304 SGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHD 363

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           + +  KER++  HSEKLA+AFGLI++ PG TI+IVKNLR+C DCH + KL+S +  R+V+
Sbjct: 364 LEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVV 423

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           +RD+ RFHHF +G CSC DYW
Sbjct: 424 MRDRNRFHHFVNGLCSCGDYW 444



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 148/310 (47%), Gaps = 36/310 (11%)

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
           + S+    A+I+ Y   G +D AR +FD   + D + WN M  GY +    +E   LF +
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQ 62

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M    V P  VT++ VLSAC +   L+ G+  H Y++   I  N+ +  +L DMY+ CG 
Sbjct: 63  MLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGS 122

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +  A  +F  I NKDV++W ++V GY   G        F Q                   
Sbjct: 123 LEDARLVFERISNKDVVAWNSMVVGYAMHG--------FSQ------------------- 155

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFV 385
               +AL LF+EM     +P + T + +L AC++ G +  G ++  +  D+  ++  +  
Sbjct: 156 ----DALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEH 211

Query: 386 GNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSL-DMFSQMLRA 443
              ++++  + G +E+A  + + M + +D   W  ++    +  HG+ +L +  ++ L +
Sbjct: 212 YGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRL--HGNIALGEQIAEYLVS 269

Query: 444 SIIPDEVTYV 453
             + +  TYV
Sbjct: 270 QNLANSGTYV 279



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 2/257 (0%)

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
           C ++ G +  A  +F  +       WN MI GY++      G+L++  ML + VRP+  T
Sbjct: 15  CYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVT 74

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
              +L    +  A+E G+ +H ++   G   +V V  +LI  Y  CG ++ AR +F+   
Sbjct: 75  VLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERIS 134

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
             DVV WN+M  GY       +  +LF EM   G  PT +T + VL+AC+    +  G +
Sbjct: 135 NKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWK 194

Query: 238 AHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINR 295
               +K E  I P +     + ++    G +  A E+  N++ ++D + W  ++      
Sbjct: 195 FFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLH 254

Query: 296 GQVDMARQYFDQMPERD 312
           G + +  Q  + +  ++
Sbjct: 255 GNIALGEQIAEYLVSQN 271


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/663 (36%), Positives = 363/663 (54%), Gaps = 53/663 (7%)

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           V  WNTMI    +       V +  DM+   VRPD  TF   L   +R   +  G+E+H 
Sbjct: 247 VVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHA 306

Query: 140 HVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYKRVKQ 196
            VLK     ++ FV +AL+  Y    +V  AR +FD+       +  WNAM  GY +   
Sbjct: 307 VVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGM 366

Query: 197 FDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
            +E  +LF  ME + G  P+  T+  VL ACA+ +     +  H YV +  +  N  ++N
Sbjct: 367 DEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQN 426

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           AL DMYA  GEM                               D+AR+ F  +  RD V 
Sbjct: 427 ALMDMYARLGEM-------------------------------DVARRIFAMIDPRDVVS 455

Query: 316 WTAMIDGYLRVNRFREALTLFREMQ----------------TSNIRPDEFTIVSILTACA 359
           W  +I G +      EA  L  EMQ                     P+  T++++L  CA
Sbjct: 456 WNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCA 515

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
            L A   G+ +  Y  ++ +++DI VG+AL+DMY KCG +  ++ VF  + R++  TW  
Sbjct: 516 ALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNV 575

Query: 420 MIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           +I+   ++G GD+++ +F +M       P+EVT++  L+AC+H+G+VD G E F  M   
Sbjct: 576 LIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERD 635

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRVHRDAEMAE 537
           HG++P    + C+VD+LGRAG L+EA  +I +M P +     W +LLGACR+HR+ E+ E
Sbjct: 636 HGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGE 695

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
           +AA+++ EL+P   + YVLLCNIY+A   WD    +R  +  +G+ K PGCS IE++G +
Sbjct: 696 VAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAI 755

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLA 657
           H F+AG+ SHP + E++  +D +   ++  GY PD S V  DV E++K   +  HSEKLA
Sbjct: 756 HRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLA 815

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           +AFGL+ + PG  IR+ KNLR+C DCH  AK +S +  R++++RD  RFHHF+ GSCSC 
Sbjct: 816 IAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCG 875

Query: 718 DYW 720
           DYW
Sbjct: 876 DYW 878



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 186/429 (43%), Gaps = 61/429 (14%)

Query: 21  SPIETCESMHQL---KQIHSQTIK-LGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKI 75
           S +  C  +  L   +++H+  +K   L  N  V + LV  +  +EK  +  A +VF  +
Sbjct: 287 SALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEK--VASARRVFDMV 344

Query: 76  PRPS--VCLWNTMIKGYSRIDSHKNGVLIYLDM-LKSDVRPDNYTFPFLLKGFTRDIAVE 132
           P PS  + +WN MI GY++    +  + ++  M  ++   P   T   +L    R     
Sbjct: 345 PEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFA 404

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
             + +H +V+K G   + FVQNAL+  Y   GE+D+AR IF +    DVV+WN + +G  
Sbjct: 405 GKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCV 464

Query: 193 RVKQFDETRKLFGEM----------------ERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
                 E  +L  EM                E    +P ++T++ +L  CA L     GK
Sbjct: 465 VQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGK 524

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
             H Y     +  ++ + +AL DMYA CG +  +  +F  +  ++VI+W  ++  Y   G
Sbjct: 525 EIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHG 584

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRPDEFTIVSIL 355
             D                               EA+ LF EM       P+E T ++ L
Sbjct: 585 LGD-------------------------------EAVALFDEMAAGGEATPNEVTFIAAL 613

Query: 356 TACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
            AC++ G ++ G E        + VK    +   ++D+  + G +++A  +   M   ++
Sbjct: 614 AACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQ 673

Query: 415 --FTWTAMI 421
               W++++
Sbjct: 674 QVSAWSSLL 682


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 356/578 (61%), Gaps = 1/578 (0%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           I++  S+  +K+ H+  I+     NP   + ++      +  +  A   F +I +P++ +
Sbjct: 64  IKSGFSIKSIKEQHAHLIRTHHHKNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLI 123

Query: 83  WNTMIKGYSRIDSHKNGVLIYLD-MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           +N +I+G S+ ++    +++Y D M    +  DN TF +L K  +R   V  G+  H  V
Sbjct: 124 FNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQV 183

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           LK GF S +F++N+LI  Y   GE+  A+ +FD     D+V+WN++  GY +  +F E  
Sbjct: 184 LKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVL 243

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
            LF  M    V   SVT+V V+ AC+ L +  V     +Y+++  +  ++ L N+L DMY
Sbjct: 244 DLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMY 303

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
              G +  A  +F  ++ K+++SW A++TGY   G +  A++ F++MP R+ + WT MI 
Sbjct: 304 GRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMIS 363

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           G  + N+  +AL LF+EM  +N++PDE T+ S+L+AC++LG L+ G+ V  Y+ ++ +K+
Sbjct: 364 GCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKS 423

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
           D++VGNALIDMYCKCG V+KA  VF +M +KD  +WT+MI+GLA+NG  D   ++FSQML
Sbjct: 424 DVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQML 483

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
           R  + P   +++G+L ACTH G+VD+G EYF  M   +G+ P   HYGC+VDLL R+G L
Sbjct: 484 RDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGEL 543

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
           + A E IK MP+ P+ ++W  LL AC++HR+  +AE+A  ++LELDP N   YVLL N Y
Sbjct: 544 DRAYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSNTY 603

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
           A  +RWD+   +R +++   ++K    S IE+ G  ++
Sbjct: 604 AGSDRWDDASRMRDLMVVGDVQKPSSWSSIEVIGATNK 641


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 254/744 (34%), Positives = 392/744 (52%), Gaps = 85/744 (11%)

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID--SHKNGVLIYLDMLKSDVRPDNYTFP 119
            G +  A  +F +IP P V  +N +I+ YS     +  +G+ +Y  ML+  V P+NYTFP
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           F LK  +       G+ +H H +  G  + +FV  AL+  Y  C  +  A  IF      
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 180 DVVTWNAMFSGYKRVKQFDE--TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           D+V WNAM +GY     +       L  +M+   + P + T+V +L   A+   L  G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 238 AHRY-VKEC---------KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
            H Y ++ C         K+   ++L  AL DMYA CG + +A  +F  +  ++ ++W+A
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 288 IVTGYINRGQVDMARQYFDQMPER------------------------------------ 311
           ++ G++   ++  A   F  M  +                                    
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 312 ----DYVLWTAMIDGYLRVNRFREALTLFREM---------------------------- 339
               D     +++  Y +     +A+ LF EM                            
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 340 ---QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
              Q  N+ PD  T+VS++ AC++L AL+ G      +    + ++  + NALIDMY KC
Sbjct: 430 KKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKC 489

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G ++ +++VF  M  +D  +W  MI G  I+G G ++  +F +M      PD VT++ +L
Sbjct: 490 GRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLL 549

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+H+G+V EG+ +F  M   +G+ P   HY CMVDLL R G L+EA E I++MP++ +
Sbjct: 550 SACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD 609

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
             VW ALLGACRV+++ ++ +  ++ I EL P+    +VLL NIY+A  R+D   E+R +
Sbjct: 610 VRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRII 669

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
              +G KK+PGCS IE+NG +H FV GD+SHPQ+ EIY +LD +   +K +GY PD S V
Sbjct: 670 QKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFV 729

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             D+ EE+KE+A+  HSEKLA+A+G++S     TI + KNLR+C DCH + K +S++  R
Sbjct: 730 LQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRR 789

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
            +IVRD  RFHHFK+G CSC D+W
Sbjct: 790 AIIVRDANRFHHFKNGQCSCGDFW 813



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 134/326 (41%), Gaps = 32/326 (9%)

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA--LTLFREMQTSNIRPDEF 349
           +I  G +  A   FDQ+P  D   +  +I  Y   +    A  L L+R M    + P+ +
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
           T    L AC+ L     G  +  +     ++ D+FV  AL+DMY KC  +  A  +F  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 410 LRKDKFTWTAMIVGLAING--HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
             +D   W AM+ G A +G  H   +  +  QM    + P+  T V +L      G + +
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVD--LLGRA--------GHLNEALEVIKNMPMKPNS 517
           G    A   I+  +  N      + D  LLG A        G L  A  V   MP + N 
Sbjct: 247 GTSVHA-YRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NE 304

Query: 518 IVWGALLGA---CRVHRDAEM--AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR- 571
           + W AL+G    C     A +    M A+ +  L P + A      +   AC   D+ R 
Sbjct: 305 VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA------SALRACASLDHLRM 358

Query: 572 --ELRQMILDRGIKK--TPGCSMIEM 593
             +L  ++   G+    T G S++ M
Sbjct: 359 GEQLHALLAKSGVHADLTAGNSLLSM 384


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/589 (39%), Positives = 353/589 (59%), Gaps = 52/589 (8%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLC---GEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           +++H  +LK G        + L++ +C     G +  AR +FD  ++ +   WN M  GY
Sbjct: 35  RQIHGQMLKTGLILDEIPASKLLA-FCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGY 93

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
              K+ +E   L+  M    V   + T   +L AC+ +  L+  ++ H ++ +       
Sbjct: 94  SNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIK------- 146

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
                          MGF  EI+         +  +++  Y   G +  AR  FDQ+ +R
Sbjct: 147 ---------------MGFGSEIY---------TTNSLLNVYSKSGDIKSARLLFDQVDQR 182

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D                  EAL LF  MQT+ I+ D   +VS L ACA+LG L+ G+W+ 
Sbjct: 183 D-----------------TEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIH 225

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            YI K++++ D  +G  LIDMY KCGD+E+A  VFR+M  K    WTAMI G AI+G G 
Sbjct: 226 AYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGR 285

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L+ F +M  A + P+++T+ G+L+AC+H G+V E +  F  M   HG +P+  HYGCM
Sbjct: 286 EALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCM 345

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAG L EA E+I+NMP+KPN+ +WGALL AC +H + E+ +   K ++++DP + 
Sbjct: 346 VDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHG 405

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             Y+ L +I+AA   W+    +R+ + ++G+ K PGCS+I +NG  HEF+AGD+SHPQ K
Sbjct: 406 GRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIK 465

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           EI   L+++   L+  GY P + ++ LD+ +++KE A++ HSEKLA+ FGLIS+ PG+TI
Sbjct: 466 EIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTI 525

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RIVKNLR+C DCH + KL+S VY RE+++RD+TRFH FK G+C+C DYW
Sbjct: 526 RIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574



 Score =  219 bits (558), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 134/428 (31%), Positives = 219/428 (51%), Gaps = 56/428 (13%)

Query: 8   SPPSTLTQET---PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKG 63
           +P S L+ E+     +  ++ C +M +L+QIH Q +K GL+ +    +KL+ FC S   G
Sbjct: 7   TPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSG 66

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            + YA  VF +I RP+  +WNTMI+GYS     +  +L+Y  ML   V  + YTFPFLLK
Sbjct: 67  SLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLK 126

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
             +   A+E  +++H H++K GF S ++  N+L++ Y   G++  AR +FD         
Sbjct: 127 ACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFD--------- 177

Query: 184 WNAMFSGYKRVKQFD-ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
                    +V Q D E   LF  M+  G+   +V +V  L ACA L  LD GK  H Y+
Sbjct: 178 ---------QVDQRDTEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYI 228

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
           K+ +I  + IL   L DMYA CG++  A+E+F  ++ K V  WTA+++GY   G      
Sbjct: 229 KKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG------ 282

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                    R REAL  F +MQT+ + P++ T   ILTAC++ G
Sbjct: 283 -------------------------RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAG 317

Query: 363 ALELGEWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAM 420
            +   + +   +++ +  K  I     ++D+  + G +++A+ +   M ++ +   W A+
Sbjct: 318 LVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGAL 377

Query: 421 IVGLAING 428
           +    I+G
Sbjct: 378 LNACHIHG 385


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/753 (34%), Positives = 395/753 (52%), Gaps = 99/753 (13%)

Query: 33  KQIHSQTIKLGLLTNPTV--QNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           K+IH   IK     NP +   N LV+   ++   + YA +VF ++P+ ++  WNT++  Y
Sbjct: 29  KKIHCHIIKA--FRNPEIFLLNNLVS-AYAKFDRITYARRVFDQMPQRNLYSWNTLLSSY 85

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDN-----------------------YTFPFLLKGF-- 125
           S++        ++  M   D+   N                       Y  PF L     
Sbjct: 86  SKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIAL 145

Query: 126 -------TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
                  ++   V  G ++H HV+KFGF S VFV + L+  Y   G V  AR  FD   +
Sbjct: 146 STMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPE 205

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV------------------ 220
            +VV +N + +G  R  + +++R+LF +M+ K  +  +  I                   
Sbjct: 206 KNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREM 265

Query: 221 -------------LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
                         VL+AC  +  L  GK+ H Y+       N+ + +AL DMY  C  +
Sbjct: 266 RLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSI 325

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  +F  +  K+V+S                               WTAM+ GY +  
Sbjct: 326 KSAETVFRKMNCKNVVS-------------------------------WTAMLVGYGQNG 354

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
              EA+ +F +MQ + I PD+FT+ S++++CANL +LE G         + + + I V N
Sbjct: 355 YSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSN 414

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           AL+ +Y KCG +E + R+F EM   D+ +WTA++ G A  G  +++L +F  ML     P
Sbjct: 415 ALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKP 474

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D+VT++GVLSAC+  G+V +G + F  M  +H I P E HY CM+DL  RAG L EA + 
Sbjct: 475 DKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKF 534

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           I  MP  P++I W +LL +CR HR+ E+ + AA+ +L+L+P N A Y+LL +IYAA  +W
Sbjct: 535 INKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKW 594

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           +    LR+ + D+G++K PGCS I+    VH F A D+S+P + +IY +L+++   +   
Sbjct: 595 EEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQE 654

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           GY+PD++ V  DV + +K + +  HSEKLA+AFGLI   PG+ IR+VKNLR+C DCH   
Sbjct: 655 GYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNAT 714

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           K +S +  RE++VRD  RFH FK G CSC D+W
Sbjct: 715 KYISKITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 136/266 (51%), Gaps = 5/266 (1%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           ++ + KQ+H+  I+     N  V + LV   C  K  +K A  VFRK+   +V  W  M+
Sbjct: 289 ALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCK-SIKSAETVFRKMNCKNVVSWTAML 347

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
            GY +    +  V I+ DM  + + PD++T   ++       ++E G + HC  L  G  
Sbjct: 348 VGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLI 407

Query: 148 SSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
           S + V NAL++ Y  CG ++ +  +F ++SY D+V +W A+ SGY +  + +ET +LF  
Sbjct: 408 SFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEV-SWTALVSGYAQFGKANETLRLFES 466

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACG 265
           M   G  P  VT + VLSAC++   +  G +     +KE +I+P       + D+++  G
Sbjct: 467 MLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAG 526

Query: 266 EMGFALEIFGNIK-NKDVISWTAIVT 290
            +  A +    +  + D I W ++++
Sbjct: 527 RLEEARKFINKMPFSPDAIGWASLLS 552



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 144/331 (43%), Gaps = 34/331 (10%)

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           C  LK     K+ H ++ +    P + L N L   YA    + +A  +F  +  +++ SW
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-I 344
             +++ Y     +    + F  MP RD V W ++I  Y       +++  +  M  +   
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK--------- 395
             +   + ++L   +  G + LG  V  ++ K   ++ +FVG+ L+DMY K         
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQ 198

Query: 396 ----------------------CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
                                 C  +E ++++F +M  KD  +WTAMI G   NG   ++
Sbjct: 199 AFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREA 258

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           +D+F +M   ++  D+ T+  VL+AC     + EG++  A   I+   + N      +VD
Sbjct: 259 IDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHA-YIIRTDYQDNIFVGSALVD 317

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           +  +   +  A  V + M  K N + W A+L
Sbjct: 318 MYCKCKSIKSAETVFRKMNCK-NVVSWTAML 347



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 112/267 (41%), Gaps = 45/267 (16%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           N+ I P      +  L S I +C ++  L+   Q H + +  GL++  TV N LVT    
Sbjct: 368 NNGIEP-----DDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTL-YG 421

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           + G ++ + ++F ++       W  ++ GY++       + ++  ML    +PD  TF  
Sbjct: 422 KCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIG 481

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +L   +R   V+ G ++        F+S                   M +    +  +D 
Sbjct: 482 VLSACSRAGLVQKGNQI--------FES-------------------MIKEHRIIPIEDH 514

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
              +  M   + R  + +E RK   +M      P ++    +LS+C   +++++GK A  
Sbjct: 515 ---YTCMIDLFSRAGRLEEARKFINKMPFS---PDAIGWASLLSSCRFHRNMEIGKWAAE 568

Query: 241 YVKECKIVP-NLILENALTDMYAACGE 266
            +   K+ P N      L+ +YAA G+
Sbjct: 569 SL--LKLEPHNTASYILLSSIYAAKGK 593


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/704 (34%), Positives = 381/704 (54%), Gaps = 39/704 (5%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT---FCCSEKGDMKYACKVFRKIPR 77
           S +   + +  L+QIH+Q I  GL  N  + N L+    +C    G +  A ++F   P 
Sbjct: 29  SILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYC----GLLADAKQIFHHTPC 84

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            +V  W  +I G ++ D     + ++ +M   + +P+  T   +L  F     +   K +
Sbjct: 85  KNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSV 144

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           HC  ++ GF+ +VFV+ AL+  Y   G + +AR +F+   + +VV+WNA+ SGY      
Sbjct: 145 HCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFS 204

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           +E   LF  M RKG+L    TI+ ++ A   +  L VG   H ++       +  ++ AL
Sbjct: 205 EEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTAL 264

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            D+Y                               ++   VD A + F +M  +D   WT
Sbjct: 265 MDIY-------------------------------VSHNCVDDAHRVFSEMFVKDVAAWT 293

Query: 318 AMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
            M+ G+     +  A+  F +M    N++ D   ++ IL++C++ GAL+ G  V     K
Sbjct: 294 LMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIK 353

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
               N+IFVG+A+IDMY  CG++E A+R F  M  KD   W AMI G  +NG+G  ++D+
Sbjct: 354 TCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDL 413

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F QM  + + PDE T+V VL AC+H GMV EG + F  M       PN  HY C++D+LG
Sbjct: 414 FLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILG 473

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           RAG L+ A   I NMP +P+  V+  LLGACR+H + ++    +++I E++P++   YVL
Sbjct: 474 RAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVL 533

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L N+YA    W+  +  R  +  + +KK PG S IE+N  ++ F+AG+K HPQ  +I   
Sbjct: 534 LSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGI 593

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L  +   +K  GY+P+ + +  DV ++ K+  +Y HSEK+A+AFGL+ + PG  IRI KN
Sbjct: 594 LKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKN 653

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR C DCH  +K VS V+ R ++++D  RFH F+ G CSC+DYW
Sbjct: 654 LRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 256/718 (35%), Positives = 392/718 (54%), Gaps = 56/718 (7%)

Query: 23  IETCESM---HQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPR 77
           ++ C ++   H  + IH   I  GL  +  V   L+     C+   D   A  +F  +P 
Sbjct: 17  LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD---AAHIFATMPA 73

Query: 78  PSVCLWNTMIKGYSRIDSHKNGV--LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
             +  WN M+ GY+    + + V  L+ + M    +RP+  T   LL    +  A+  G 
Sbjct: 74  RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGT 133

Query: 136 ELHCHVL----------KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
            +H + +          K      V +  AL+  Y  CG +  AR +FD     + VTW+
Sbjct: 134 SVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 193

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVL---PTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           A+  G+    +  +   LF  M  +G+    PTS  I   L ACA L  L +G++ H  +
Sbjct: 194 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGEQLHALL 251

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +  +  +L   N+L  MYA                                 G +D A 
Sbjct: 252 AKSGVHADLTAGNSLLSMYA-------------------------------KAGLIDQAI 280

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
             FD+M  +D V ++A++ GY++  R  EA  +F++MQ  N+ PD  T+VS++ AC++L 
Sbjct: 281 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 340

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
           AL+ G      +    + ++  + NALIDMY KCG ++ +++VF  M  +D  +W  MI 
Sbjct: 341 ALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA 400

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G  I+G G ++  +F +M      PD VT++ +LSAC+H+G+V EG+ +F  M   +G+ 
Sbjct: 401 GYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLT 460

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   HY CMVDLL R G L+EA E I++MP++ +  VW ALLGACRV+++ ++ +  ++ 
Sbjct: 461 PRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRM 520

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           I EL P+    +VLL NIY+A  R+D   E+R +   +G KK+PGCS IE+NG +H FV 
Sbjct: 521 IQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 580

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
           GD+SHPQ+ EIY +LD +   +K +GY PD S V  D+ EE+KE+A+  HSEKLA+A+G+
Sbjct: 581 GDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGI 640

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +S     TI + KNLR+C DCH + K +S+V  R +IVRD  RFHHFK+G CSC D+W
Sbjct: 641 LSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/702 (34%), Positives = 389/702 (55%), Gaps = 38/702 (5%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S ++ C ++    +IH   +K G + +  V   L+      K  +  A  +F ++P   +
Sbjct: 158 SVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKA-VGNARILFDEMPVRDM 216

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP-DNYTFPFLLKGFTRDIAVEFGKELHC 139
             WN MI GY +  + K  +      L + +R  D+ T   LL   T       G  +H 
Sbjct: 217 GSWNAMISGYCQSGNAKEAL-----TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHS 271

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           + +K G +S +FV N LI  Y   G +   + +FD  Y  D+++WN++   Y+  +Q   
Sbjct: 272 YSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLR 331

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
              LF EM    + P  +T++ + S  ++L D          ++ C+ V    L      
Sbjct: 332 AISLFQEMRLSRIQPDCLTLISLASILSQLGD----------IRACRSVQGFTLRK---- 377

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
                   G+ LE        D+    A+V  Y   G VD AR  F+ +P  D + W  +
Sbjct: 378 --------GWFLE--------DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTI 421

Query: 320 IDGYLRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           I GY +     EA+ ++  M+    I  ++ T VS+L AC+  GAL  G  +   + KN 
Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 481

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +  D+FV  +L DMY KCG +E A  +F ++ R +   W  +I     +GHG+K++ +F 
Sbjct: 482 LYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 541

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +ML   + PD +T+V +LSAC+H+G+VDEG+  F  M   +GI P+  HYGCMVD+ GRA
Sbjct: 542 EMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRA 601

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G L  AL+ IK+M ++P++ +WGALL ACRVH + ++ ++A++ + E++P++   +VLL 
Sbjct: 602 GQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLS 661

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           N+YA+  +W+   E+R +   +G++KTPG S +E++  V  F  G+++HP  +E+Y +L 
Sbjct: 662 NMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 721

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
            + + LK +GY+PD   V  DV +++KE  +  HSE+LA+AF LI++    TIRI KNLR
Sbjct: 722 ALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLR 781

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C DCH + K +S + +RE+IVRD  RFHHFK+G CSC DYW
Sbjct: 782 VCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 169/582 (29%), Positives = 270/582 (46%), Gaps = 58/582 (9%)

Query: 26  CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT 85
           C ++   K +H++ +    + N  +  KLV   C   G++  A   F  I    V  WN 
Sbjct: 64  CTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCY-LGNVALARHTFDHIQNRDVYAWNL 122

Query: 86  MIKGYSRIDSHKNGVLIY-LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF 144
           MI GY R  +    +  + L ML S + PD  TFP +LK     I    G ++HC  LKF
Sbjct: 123 MISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKF 179

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           GF   V+V  +LI  Y     V  AR +FD     D+ +WNAM SGY +     E   L 
Sbjct: 180 GFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLS 239

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
             +        SVT+V +LSAC +  D + G   H Y  +  +   L + N L D+YA  
Sbjct: 240 NGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEF 295

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
           G +    ++F  +  +D+ISW +I+  Y             ++ P R             
Sbjct: 296 GRLRDCQKVFDRMYVRDLISWNSIIKAY-----------ELNEQPLR------------- 331

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY-IDKNKVKNDI 383
                  A++LF+EM+ S I+PD  T++S+ +  + LG +     V+ + + K     DI
Sbjct: 332 -------AISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDI 384

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM-LR 442
            +GNA++ MY K G V+ A+ VF  +   D  +W  +I G A NG   ++++M++ M   
Sbjct: 385 TIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEE 444

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             I  ++ T+V VL AC+  G + +G +    + +++G+  +      + D+ G+ G L 
Sbjct: 445 GEIAANQGTWVSVLPACSQAGALRQGMKLHGRL-LKNGLYLDVFVVTSLADMYGKCGRLE 503

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNI 560
           +AL +   +P + NS+ W  L+     H   E A M  K++L+  + PD+     LL   
Sbjct: 504 DALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLL--- 559

Query: 561 YAACNRWDNFRE----LRQMILDRGIK---KTPGCSMIEMNG 595
            +AC+      E       M  D GI    K  GC M++M G
Sbjct: 560 -SACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGC-MVDMYG 599



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 143/312 (45%), Gaps = 19/312 (6%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLG-LLTNPTVQNKLVTFCCSEKGDM 65
           IS  S L+Q    +  I  C S+         T++ G  L + T+ N +V    ++ G +
Sbjct: 352 ISLASILSQ----LGDIRACRSVQGF------TLRKGWFLEDITIGNAVVVMY-AKLGLV 400

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM-LKSDVRPDNYTFPFLLKG 124
             A  VF  +P   V  WNT+I GY++       + +Y  M  + ++  +  T+  +L  
Sbjct: 401 DSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPA 460

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
            ++  A+  G +LH  +LK G    VFV  +L   Y  CG ++ A  +F    + + V W
Sbjct: 461 CSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPW 520

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK- 243
           N + + +      ++   LF EM  +GV P  +T V +LSAC+    +D G+     ++ 
Sbjct: 521 NTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQT 580

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMAR 302
           +  I P+L     + DMY   G++  AL+   ++    D   W A+++     G VD+ +
Sbjct: 581 DYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGK 640

Query: 303 ----QYFDQMPE 310
                 F+  PE
Sbjct: 641 IASEHLFEVEPE 652


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/541 (41%), Positives = 320/541 (59%), Gaps = 32/541 (5%)

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
            V+W A+ + Y       E   +       G+ P S T V VL+ACA++ DL+ G+    
Sbjct: 6   TVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAVWA 65

Query: 241 YVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
             + E  +  ++ +  A  D+Y  CGEM                               +
Sbjct: 66  AARQEEGVAESVFVATAALDLYVKCGEM-------------------------------E 94

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
            AR  FD+M  RD V W AM+ GY      REAL LF  MQ    +PD +T+V  L+AC 
Sbjct: 95  KARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACT 154

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
            LGAL+LG      +  ++V  +  +G ALIDMY KCG   +A  VF++ML +D   W A
Sbjct: 155 RLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNA 214

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           MI+GL + GH   +  +  QM ++ +  ++ T++G+L +CTHTG+V++GR+YF +MT  +
Sbjct: 215 MILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVY 274

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
            I P   HYGCMVDL  RAG L EA ++I +MPM  N++VWGALLG C++HR+A++AE A
Sbjct: 275 RISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHA 334

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
            KQ++ L+P N   YV+L NIY+   RW++  +LR  +  +GI+K P  S +E++G VH+
Sbjct: 335 LKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHK 394

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA 659
           F  GD SHP + +IY KLDE+  ++K +GY P    V  DV  E+KE  +  HSEK+A+A
Sbjct: 395 FYVGDDSHPLSDKIYAKLDELGMEMKAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIA 454

Query: 660 FGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
           F LI++ PG TIR+ KNLR+C DCH   KL+S +  RE++VRD  RFH F+ G CSC DY
Sbjct: 455 FSLITTEPGETIRVTKNLRVCTDCHSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDY 514

Query: 720 W 720
           W
Sbjct: 515 W 515



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 117/218 (53%), Gaps = 3/218 (1%)

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           MP    V WTA+I  Y+      EA+ + R    S +RPD FT V +LTACA +  LE G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 368 EWVKTYIDKNK-VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           E V     + + V   +FV  A +D+Y KCG++EKA+ VF EM  +D   W AM+ G A 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           NGH  ++LD+F  M      PD  T VG LSACT  G +D GR+    M     +  N  
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVG-MVHWDEVLGNPV 179

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
               ++D+  + G  +EA  V + M ++ + IVW A++
Sbjct: 180 LGTALIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMI 216



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 162/371 (43%), Gaps = 34/371 (9%)

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           +P PS   W  +I  Y         + +      S +RPD++T   +L    R   +E G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 135 KELHCHVLKF-GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           + +     +  G   SVFV  A +  Y  CGE++ AR +FD     D V W AM  GY  
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                E   LF  M+ +G  P   T+V  LSAC +L  LD+G++A   V   +++ N +L
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVL 180

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             AL DMYA CG    A  +F  +  +D+I W A++ G    G   +             
Sbjct: 181 GTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKI------------- 227

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKT 372
                             A  L  +M+ S ++ ++ T + +L +C + G +  G ++   
Sbjct: 228 ------------------AFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHN 269

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
                ++   I     ++D++ + G +E+A ++  +M +  +   W A++ G  I+ + D
Sbjct: 270 MTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNAD 329

Query: 432 KSLDMFSQMLR 442
            +     Q++R
Sbjct: 330 LAEHALKQLIR 340



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 120/290 (41%), Gaps = 11/290 (3%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G+M+ A  VF ++       W  M+ GY+     +  + ++  M     +PD YT    L
Sbjct: 91  GEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGAL 150

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
              TR  A++ G++    V       +  +  ALI  Y  CG    A  +F    + D++
Sbjct: 151 SACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDII 210

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA-HRY 241
            WNAM  G            L G+M++ GV     T + +L +C     ++ G++  H  
Sbjct: 211 VWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNM 270

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-KDVISWTAIVTGYINRGQVDM 300
               +I P +     + D+++  G +  A ++ G++    + + W A++ G       D+
Sbjct: 271 THVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADL 330

Query: 301 ARQYFDQM------PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           A     Q+         +YV+ + +   Y    R+ +A  L  EM+   I
Sbjct: 331 AEHALKQLIRLEPWNSGNYVMLSNI---YSNSGRWEDAAKLRLEMKAKGI 377


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/662 (37%), Positives = 367/662 (55%), Gaps = 35/662 (5%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFL 121
            D++ A KVF K+   +V  W  MI   ++   +   + ++L+ML  S   PD +T   L
Sbjct: 209 ADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGL 268

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           +        +  GKELH  V++ G    + V  +L+  Y  CG V  AR +FD   + +V
Sbjct: 269 ISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNV 328

Query: 182 VTWNAMFSGYKRVKQF--DETRKLFGEME-RKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           ++W A+ +GY R       E  ++F  M  + GV P   T   VL ACA L D D G++ 
Sbjct: 329 MSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQV 388

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H    +  +                      A++  GN           +V+ Y   G++
Sbjct: 389 HGQTIKLGLS---------------------AIDCVGN----------GLVSVYAKSGRM 417

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
           + AR+ FD + E++ V  T + D  ++         L RE++        FT  S+L+  
Sbjct: 418 ESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGA 477

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A +G +  GE +   + K   + D+ V NALI MY KCG+ E A +VF +M   +  TWT
Sbjct: 478 ACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWT 537

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           ++I G A +G   K+L++F  ML   + P++VTY+ VLSAC+H G++DE  ++F  M   
Sbjct: 538 SIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDN 597

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           HGI P   HY CMVDLLGR+G L+EA+E I +MP   +++VW   LG+CRVHR+ ++ E 
Sbjct: 598 HGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEH 657

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           AAK ILE +P + A Y+LL N+YA   RW++   +R+ +  + I K  G S IE+   VH
Sbjct: 658 AAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVH 717

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
           +F  GD  HP+ ++IY KLDE+   +K VGY+P+   V  DV +E KE+ ++QHSEKLA+
Sbjct: 718 KFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAV 777

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           AF LIS+     IR+ KNLR+C DCH   K +SMV  RE++VRD  RFHH K G+CSC D
Sbjct: 778 AFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCND 837

Query: 719 YW 720
           YW
Sbjct: 838 YW 839



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 144/569 (25%), Positives = 252/569 (44%), Gaps = 60/569 (10%)

Query: 27  ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI--PRPSVCLWN 84
           ++ H  K +H +     L  +  + N L+T   S+  D   A  +F+ +   +  V  ++
Sbjct: 66  KNTHLGKLLHHKLTTSNLPLDTLLLNSLITLY-SKSNDPITAFSIFQSMENSKRDVVSYS 124

Query: 85  TMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           ++I  ++   +    V ++  +L  D V P+ Y F  +++   +    + G  L   VLK
Sbjct: 125 SIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLK 184

Query: 144 FG-FDSSVFVQNALISTY---CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            G FDS V V   LI  +   C   +++ AR +FD   + +VVTW  M +   +    DE
Sbjct: 185 TGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDE 244

Query: 200 TRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
              LF EM    G +P   T+  ++S CA+++ L +GK  H +V    +V +L +  +L 
Sbjct: 245 AIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLV 304

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA CG +  A ++F  ++  +V+SWTA+V GY+  G                      
Sbjct: 305 DMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGG---------------------- 342

Query: 319 MIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
              GY      REA+ +F  M     + P+ FT   +L ACA+L   + GE V     K 
Sbjct: 343 --GGYE-----REAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKL 395

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM----IVGLAINGHGDKS 433
            +     VGN L+ +Y K G +E A++ F  +  K+  + T +    +    +N   D  
Sbjct: 396 GLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQD-- 453

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           LD   + + + +     TY  +LS     G + +G +  A M ++ G   + +    ++ 
Sbjct: 454 LDREVEYVGSGV--SSFTYASLLSGAACIGTIGKGEQIHA-MVVKIGFRTDLSVNNALIS 510

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD-PDNEA 552
           +  + G+   AL+V  +M    N I W +++     H  A  A      +LE     N+ 
Sbjct: 511 MYSKCGNKEAALQVFNDME-DCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDV 569

Query: 553 VYVLLCNIYAACNR-------WDNFRELR 574
            Y+    + +AC+        W +F  +R
Sbjct: 570 TYIA---VLSACSHVGLIDEAWKHFTSMR 595



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 168/352 (47%), Gaps = 35/352 (9%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           T LIS     + +   K++HS  I+ GL+ +  V   LV    ++ G ++ A KVF  + 
Sbjct: 266 TGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDM-YAKCGLVQEARKVFDGMR 324

Query: 77  RPSVCLWNTMIKGYSRIDS--HKNGVLIYLDM-LKSDVRPDNYTFPFLLKGFTRDIAVEF 133
             +V  W  ++ GY R      +  + ++ +M L+  V P+ +TF  +LK        +F
Sbjct: 325 EHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDF 384

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+++H   +K G  +   V N L+S Y   G ++ AR  FDV ++ ++V+   +     +
Sbjct: 385 GEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVK 444

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
               +  + L  E+E  G   +S T   +LS  A +  +  G++ H  V +     +L +
Sbjct: 445 DFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSV 504

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            NAL  MY+ CG    AL++F ++++ +VI+WT+I+ G+   G                 
Sbjct: 505 NNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFAS-------------- 550

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
                            +AL LF  M  + ++P++ T +++L+AC+++G ++
Sbjct: 551 -----------------KALELFYNMLETGVKPNDVTYIAVLSACSHVGLID 585



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 180/399 (45%), Gaps = 43/399 (10%)

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV- 175
           T   LLK   R      GK LH  +          + N+LI+ Y    +   A  IF   
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSM 113

Query: 176 -SYKDDVVTWNAMFSGYKRVKQFDETRKLFGE-MERKGVLPTSVTIVLVLSACAKLKDLD 233
            + K DVV+++++ S +   +   +  ++F + + + GV P       V+ AC K     
Sbjct: 114 ENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFK 173

Query: 234 VGKRAHRYV-KECKIVPNLILENALTDMYA---ACGEMGFALEIFGNIKNKDVISWTAIV 289
            G     +V K      ++ +   L DM+    +  ++  A ++F  ++ K+V++WT ++
Sbjct: 174 TGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMI 233

Query: 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDE 348
           T     G  D                               EA+ LF EM  +S   PD 
Sbjct: 234 TRLAQYGYND-------------------------------EAIDLFLEMLVSSGYVPDR 262

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
           FT+  +++ CA +  L LG+ + +++ ++ +  D+ VG +L+DMY KCG V++A++VF  
Sbjct: 263 FTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDG 322

Query: 409 MLRKDKFTWTAMIVGLAINGHG--DKSLDMFSQM-LRASIIPDEVTYVGVLSACTHTGMV 465
           M   +  +WTA++ G    G G   +++ MFS M L+  + P+  T+ GVL AC      
Sbjct: 323 MREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDF 382

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           D G +     TI+ G+   +     +V +  ++G +  A
Sbjct: 383 DFGEQVHGQ-TIKLGLSAIDCVGNGLVSVYAKSGRMESA 420



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 180/410 (43%), Gaps = 74/410 (18%)

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
           +T  L+L  C + K+  +GK  H  +    +  + +L N+L  +Y+   +   A  IF +
Sbjct: 53  ITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQS 112

Query: 277 IKN--KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
           ++N  +DV+S+++I++ + N      A + FDQ+  +D                      
Sbjct: 113 MENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQD---------------------- 150

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK-VKNDIFVGNALIDMY 393
                    + P+E+   +++ AC   G  + G  +  ++ K     + + VG  LIDM+
Sbjct: 151 --------GVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMF 202

Query: 394 ---CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDE 449
              C   D+E A++VF +M  K+  TWT MI  LA  G+ D+++D+F +ML +S  +PD 
Sbjct: 203 VKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDR 262

Query: 450 VTYVGVLSACTHTGMVDEGREY------------------FADMTIQHGI---------- 481
            T  G++S C     +  G+E                     DM  + G+          
Sbjct: 263 FTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDG 322

Query: 482 --EPNEAHYGCMVD--LLGRAGHLNEALEVIKNMPMK----PNSIVWGALLGACRVHRDA 533
             E N   +  +V+  + G  G+  EA+ +  NM ++    PN   +  +L AC    D 
Sbjct: 323 MREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDF 382

Query: 534 EMAEMAAKQILELDPDN-EAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           +  E    Q ++L     + V   L ++YA   R ++ R+   ++ ++ +
Sbjct: 383 DFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNL 432


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/725 (33%), Positives = 383/725 (52%), Gaps = 71/725 (9%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD+  A  VF ++    +  WN ++ GY++       + +Y  +L + +RPD YTFP +L
Sbjct: 83  GDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVL 142

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           +     + +  G+E+H HV++F FD  V V NALI+ Y  CG+V  AR +FD     D +
Sbjct: 143 RSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRI 202

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNAM SGY    +  E  +LF  M    + P  +T+  V+SAC  L D  +G + H YV
Sbjct: 203 SWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYV 262

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR------- 295
                  N+ + N+L  MY + G    A  +F  ++ +DV+SWT I++G ++        
Sbjct: 263 VRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKAL 322

Query: 296 ----------------------------GQVDMARQYFDQMPERDYVLW----TAMIDGY 323
                                       GQ+DM  +  +      ++L+     ++ID Y
Sbjct: 323 ETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMY 382

Query: 324 LRVNRFREALTLFREMQTSNI------------------------------RPDEFTIVS 353
            +  R  +AL +F ++   ++                              +P+  T++S
Sbjct: 383 SKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKSKPNSVTLIS 442

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
            L+ACA +GAL  G+ +  +  K  +  D F+ NA++D+Y +CG +  A   F  +  KD
Sbjct: 443 ALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQF-NLNEKD 501

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
              W  ++ G A  G G   +++F +M+ + I PD+VT++ +L AC+ +GMV EG EYF 
Sbjct: 502 VGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQ 561

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
            M + + I PN  HY C+VDLLGRAG LNEA E I+ MP+KP+  +WGALL ACR+HR  
Sbjct: 562 RMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHV 621

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
            + E+AA+ I + D ++   Y+LLCN+YA   +WD   ++R+ + + G+   PGCS +E+
Sbjct: 622 LLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEV 681

Query: 594 NGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHS 653
            G VH F++GD  HPQ +EI + L+     +K  G+        +D  +  K      HS
Sbjct: 682 KGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGFNGQECSS-MDGIQTSKADIFCGHS 740

Query: 654 EKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
           E+ A+A+ LI+S PG+ I + KNL MC  CH   K +S +  RE+ VRD  +FHHFK G 
Sbjct: 741 ERQAIAYSLINSAPGMPIWVTKNLYMCQSCHSTVKFISKIVRREISVRDTEQFHHFKDGL 800

Query: 714 CSCKD 718
           CSC D
Sbjct: 801 CSCGD 805



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 195/425 (45%), Gaps = 50/425 (11%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
           SV + NAL+S +   G+V  A  +F    + D+ +WN +  GY +   FDE   L+  + 
Sbjct: 68  SVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRIL 127

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
             G+ P   T   VL +CA   DL  G+  H +V       ++ + NAL  MY  CG++ 
Sbjct: 128 WAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVV 187

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            A  +F  +  +D ISW A+++GY                 E D  L             
Sbjct: 188 SARMLFDKMPTRDRISWNAMISGYF----------------ENDECL------------- 218

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             E L LF  M+  +I PD  T+ S+++AC  LG   LG  + +Y+ +     +I V N+
Sbjct: 219 --EGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNS 276

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           LI MY   G  ++A+ VF  M  +D  +WT +I G   N   DK+L+ +  M     +PD
Sbjct: 277 LIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPD 336

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY------GCMVDLLGRAGHLN 502
           EVT   VLSAC   G +D G +        H +     H         ++D+  +   + 
Sbjct: 337 EVTIASVLSACASLGQLDMGMKL-------HELAERTGHILYVVVANSLIDMYSKCKRIE 389

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRV-HRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
           +ALE+   +P K + I W +++   R+ +R  E      K IL+  P++    V L +  
Sbjct: 390 KALEIFHQIPDK-DVISWTSVINGLRINNRCFEALIFFRKMILKSKPNS----VTLISAL 444

Query: 562 AACNR 566
           +AC R
Sbjct: 445 SACAR 449



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 176/433 (40%), Gaps = 42/433 (9%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           F    +S    L   T +IS  E         Q+HS  ++     N +V N L+    S 
Sbjct: 225 FRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLS- 283

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
            G  K A  VF  +    V  W T+I G          +  Y  M  +   PD  T   +
Sbjct: 284 VGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASV 343

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L        ++ G +LH    + G    V V N+LI  Y  C  ++ A  IF      DV
Sbjct: 344 LSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDV 403

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           ++W ++ +G +   +  E    F +M  K   P SVT++  LSACA++  L  GK  H +
Sbjct: 404 ISWTSVINGLRINNRCFEALIFFRKMILKSK-PNSVTLISALSACARVGALMCGKEIHAH 462

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
             +  +  +  L NA+ D+Y  CG M  AL  F N+  KDV +W  ++TGY  +G+  M 
Sbjct: 463 ALKAGMGFDGFLPNAILDLYVRCGRMRTALNQF-NLNEKDVGAWNILLTGYAQKGKGAM- 520

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                          + LF+ M  S I PD+ T +S+L AC+  
Sbjct: 521 ------------------------------VMELFKRMVESEINPDDVTFISLLCACSRS 550

Query: 362 GALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFT 416
           G +  G     Y  + KV   I         ++D+  + G + +A      M ++ D   
Sbjct: 551 GMVTEG---LEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAI 607

Query: 417 WTAMIVGLAINGH 429
           W A++    I+ H
Sbjct: 608 WGALLNACRIHRH 620



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 3/199 (1%)

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGN 387
             +AL     MQ   I  +E   V+++  C N      GE+V K  +        + +GN
Sbjct: 14  LEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLGN 73

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           AL+ M+ + GDV  A  VF  M  +D F+W  ++ G    G  D++L ++ ++L A I P
Sbjct: 74  ALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRP 133

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D  T+  VL +C     +  GRE  A + ++   + +      ++ +  + G +  A  +
Sbjct: 134 DVYTFPSVLRSCAGAMDLVRGREVHAHV-VRFDFDMDVDVVNALITMYVKCGDVVSARML 192

Query: 508 IKNMPMKPNSIVWGALLGA 526
              MP + + I W A++  
Sbjct: 193 FDKMPTR-DRISWNAMISG 210


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/515 (44%), Positives = 323/515 (62%), Gaps = 34/515 (6%)

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
           R+  LP + T   ++ ACA+L  L  G+  H    +   V  + ++N+L  +Y ACG   
Sbjct: 109 RRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACG--- 165

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP--ERDYVLWTAMIDGYLRV 326
               +F                        + A + FD+MP   R+ V W +M++ +   
Sbjct: 166 ----LF------------------------ESAHKVFDEMPVRGRNLVSWNSMLNSFAAN 197

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
            R  E LT+F EM   +  PD FTIVS+LTACA  GAL LG  V  Y++K  +  +  V 
Sbjct: 198 GRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVS 257

Query: 387 NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
           NALID+Y KCG V  A+R+F EM L +   +WT++IVGLA NG G ++L++FS M R  +
Sbjct: 258 NALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKL 317

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
           +P E+T VGVL AC+H G+VD+G  YF  M   +GI P   H GCMVDLLGRAG + EA 
Sbjct: 318 VPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAY 377

Query: 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
           + I  MP++PN++VW  LLG+C +H+  E+ ++A ++++ELDP +   YVLL N+YAA  
Sbjct: 378 DYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVG 437

Query: 566 RWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625
            W +   LR+ ++   ++K PG S++E+   V+EFV GD+SHP++++IY  L E+   L+
Sbjct: 438 MWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLR 497

Query: 626 FVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHR 685
             GY+P  S V  D+ EE+KE A+  HSE+LA+AF L+ S PG+ IRI+KNLRMC DCH 
Sbjct: 498 REGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHV 557

Query: 686 MAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
              L+S VYDRE+IVRD++RFHHF+ G+CSCKDYW
Sbjct: 558 AFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 193/412 (46%), Gaps = 48/412 (11%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS--EKGDMKYACKVFRKIPRPSVCLWNT 85
           S+   KQIH++ ++ G+ T+  +  K + F  +      ++YA  V  ++  P   L   
Sbjct: 27  SLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRL-LPHGPLDPF 85

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVR-PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF 144
            +    RI +      + L++ +  +  PD +T+P L++   R +A+  G+ LH    K 
Sbjct: 86  PLNTVLRIAAGSPRPRVALELHRRRLALPDTHTYPPLIQACARLLALREGECLHAEAAKN 145

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFD--VSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           GF + VFVQN+L+  Y  CG  + A  +FD       ++V+WN+M + +    + +E   
Sbjct: 146 GFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLT 205

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           +F EM      P   TIV VL+ACA+   L +G+R H YV++  +V N  + NAL D+YA
Sbjct: 206 VFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYA 265

Query: 263 ACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
            CG +  A  IF  +   + V+SWT+++ G                              
Sbjct: 266 KCGSVNDARRIFEEMGLGRTVVSWTSLIVG------------------------------ 295

Query: 322 GYLRVNRF-REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK-- 378
             L  N F +EAL LF  M+   + P E T+V +L AC++ G ++ G     Y D+ K  
Sbjct: 296 --LAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDG---FRYFDRMKED 350

Query: 379 --VKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
             +   I     ++D+  + G VE+A      M L  +   W  ++   A++
Sbjct: 351 YGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMH 402



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 143/301 (47%), Gaps = 15/301 (4%)

Query: 23  IETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTF--CCSEKGDMKYACKVFRKIPR 77
           I+ C  +  L++   +H++  K G +T   VQN LV     C   G  + A KVF ++P 
Sbjct: 123 IQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGAC---GLFESAHKVFDEMPV 179

Query: 78  PSVCL--WNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
               L  WN+M+  ++  +   N VL ++ +ML  D  PD +T   +L       A+  G
Sbjct: 180 RGRNLVSWNSMLNSFA-ANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALG 238

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKR 193
           + +H +V K G   +  V NALI  Y  CG V+ AR IF+ +     VV+W ++  G   
Sbjct: 239 RRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAA 298

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLI 252
                E  +LF  MER+ ++PT +T+V VL AC+    +D G R    +KE   I P + 
Sbjct: 299 NGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIE 358

Query: 253 LENALTDMYAACGEMGFALE-IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
               + D+    G +  A + I       + + W  ++       ++++ +  ++++ E 
Sbjct: 359 HLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVEL 418

Query: 312 D 312
           D
Sbjct: 419 D 419


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/594 (39%), Positives = 349/594 (58%), Gaps = 34/594 (5%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC--GEVDMARGIFDVSYKDDVVTWNAM 187
           ++E  K++H H+LK G     F  + L+++  L   G ++ A  IF    +     +N M
Sbjct: 43  SMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTM 102

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
             G       +E   L+ EM  +G+ P + T   VL AC+ L  L  G + H +V    +
Sbjct: 103 IRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGL 162

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             ++ ++N L  MY  CG    A+E  G +                           F+Q
Sbjct: 163 EVDVFVQNGLISMYGKCG----AIEHAGVV---------------------------FEQ 191

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALEL 366
           M E+    W+++I  +  V  + E L L  +M +    R +E  +VS L+AC +LG+  L
Sbjct: 192 MDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNL 251

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G  +   + +N  + ++ V  +LIDMY KCG +EK   VF+ M  K+++++T MI GLAI
Sbjct: 252 GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAI 311

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G ++L +FS ML   + PD+V YVGVLSAC+H G+V EG + F  M  +H I+P   
Sbjct: 312 HGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQ 371

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HYGCMVDL+GRAG L EA ++IK+MP+KPN +VW +LL AC+VH + E+ E+AA  I +L
Sbjct: 372 HYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKL 431

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           +  N   Y++L N+YA   +W N   +R  ++++ + +TPG S++E N  V++FV+ DKS
Sbjct: 432 NKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKS 491

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
            PQ + IY  + +M   LKF GY PD+S+V LDV E++K + +  HS+KLA+AF LI + 
Sbjct: 492 QPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTS 551

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            G  +RI +NLRMC DCH   K +S++Y+RE+ VRD  RFHHFK G+CSCKDYW
Sbjct: 552 EGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 212/416 (50%), Gaps = 35/416 (8%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRK 74
           E   +S ++ C+SM + K++H+  +KLGL  +    + LV  C  S  G M+YAC +FR+
Sbjct: 31  EQGWLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQ 90

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           I  P    +NTMI+G       +  +L+Y++ML+  + PDN+T+PF+LK  +  +A++ G
Sbjct: 91  IEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEG 150

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
            ++H HV   G +  VFVQN LIS Y  CG ++ A  +F+   +  V +W+++   +  V
Sbjct: 151 VQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASV 210

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
           + + E   L G+M R+G      +I++  LSAC  L   ++G+  H  +       N+++
Sbjct: 211 EMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVV 270

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
           + +L DMY  CG +   L +F N+ +K+  S+T ++ G    G                 
Sbjct: 271 KTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHG----------------- 313

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKT 372
                         R REAL +F +M    + PD+   V +L+AC++ G ++ G +    
Sbjct: 314 --------------RGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNR 359

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
              ++ +K  I     ++D+  + G +++A  + + M ++ +   W +++    ++
Sbjct: 360 MQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVH 415


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/602 (37%), Positives = 339/602 (56%), Gaps = 38/602 (6%)

Query: 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
           L+  Y  CGE    R IFD     +VV +N M   Y     + +   +F  M  +G  P 
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPD 136

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           + T   VL AC+   +L VG + H  V +  +  NL + N L  MY  C  +  A  +  
Sbjct: 137 NYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLD 196

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMA---------------------------------- 301
            +  +D++SW ++V GY   G+ + A                                  
Sbjct: 197 EMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNV 256

Query: 302 ---RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
              +  F ++ E+  + W  MI  Y+      EA+ L+ +MQ   + PD  +I S+L AC
Sbjct: 257 LYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPAC 316

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
            +L A  LG  +  Y+++ K++ ++ + NALIDMY KCG +++A+ VF +M+ +D  +WT
Sbjct: 317 GDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWT 376

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           +MI    ++G G  ++ +F +M  +   PD + +V VL+AC+H G+VDEGR Y  ++  +
Sbjct: 377 SMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGR-YCFNLMAE 435

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           +GI P   HY CMVDLLGRAG ++EA  + + MPM+PN  VWG+LL ACRV+    +A +
Sbjct: 436 YGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALL 495

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           AA  + +L P+    YVLL NIYA   RW +   +R ++  +GIKK PG S +E+N  V+
Sbjct: 496 AADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVY 555

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
            F+AGD+SH Q+KEIY  L  +   +K +GYMP+      DV EEDKE  +  HSEKLA+
Sbjct: 556 TFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAI 615

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
            F ++++ PG TIRI KN+R+C DCH   KL+S + +RE+I+RD  RFHHF+ G CSC D
Sbjct: 616 VFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGD 675

Query: 719 YW 720
           YW
Sbjct: 676 YW 677



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 238/508 (46%), Gaps = 55/508 (10%)

Query: 2   FSNSSISPPSTLTQETPLISP-------------IETCESMHQLKQIHSQT-IKLGLLTN 47
           FS +  + P +LT + P +SP             ++       LK++HS+  I   L  N
Sbjct: 11  FSTAKQTKPFSLTTQKPQLSPKFTALTEDLCNKILDVNPDAKTLKKLHSKILIDQNLHPN 70

Query: 48  PTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML 107
           P++  KL+    +  G+  Y   +F +I   +V  +N MI+ Y     +++ +L++  M 
Sbjct: 71  PSLGIKLMR-AYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMA 129

Query: 108 KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVD 167
                PDNYT+P +LK  +    +  G ++H  V+K G D ++++ N L+S Y  C  +D
Sbjct: 130 NQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLD 189

Query: 168 MARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
            AR + D     D+V+WN+M +GY +  +F++  KL  EME   + P + T+  +L A  
Sbjct: 190 AARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVT 249

Query: 228 K--------LKDLDVGKRAHRYVKECKIVP---NLILENALTDMY--------------- 261
                    +KD+ V  +    +    ++    N  + N   D+Y               
Sbjct: 250 NTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSI 309

Query: 262 ----AACGEMGFAL---EIFGNIKNK----DVISWTAIVTGYINRGQVDMARQYFDQMPE 310
                ACG++  A+    I   ++ K    +++   A++  Y   G +  AR  FDQM  
Sbjct: 310 SSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMF 369

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           RD V WT+MI  Y    + ++A+ LF++M+ S   PD    VS+L AC++ G ++ G + 
Sbjct: 370 RDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYC 429

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
              + +  +   I   N ++D+  + G +++A  + R+M +  ++  W +++    +   
Sbjct: 430 FNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSS 489

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            + +L     + +  + P++  Y  +LS
Sbjct: 490 MNIALLAADHLFQ--LAPEQSGYYVLLS 515


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/597 (40%), Positives = 344/597 (57%), Gaps = 14/597 (2%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
            ELH   ++ G D    V   L   Y   G +D+A  +   +     V + +    +   
Sbjct: 47  SELHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSR 106

Query: 195 KQFDETRKLFGEME-RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                   L  EM    G+LPT+ T+   L AC  L    VG+  H Y  +  +     +
Sbjct: 107 GLHHAALALLSEMLLSHGLLPTAHTLSASLPACGGLA---VGRALHGYAVKLALSGEPYV 163

Query: 254 ENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
             AL  MYA  G+   A  +F  ++ +  V+S TA++T Y   G +D AR  FD +P +D
Sbjct: 164 ATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKD 223

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            + W AM+DGY +  R  EAL LFR M  S + PDE ++V  L+A A LG  E G W+ +
Sbjct: 224 LICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHS 283

Query: 373 YIDKN---KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAIN 427
           ++  +   +V+ +  VG ALIDMY KCG +E A  VF ++   D+    W AM+ G A++
Sbjct: 284 FVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMH 343

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           GH  ++L  F Q+    + P ++T++GVL+AC+H+G+VDEGRE F  M  ++GIEP   H
Sbjct: 344 GHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEH 403

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMP-MKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           YGCMVDLLGRAG + EA E++++M   KP++++W +LL ACR+H++ E+ +  A  ++  
Sbjct: 404 YGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVAN 463

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
              N   YVLL N+YAA   W     +R M+   GI+K PGCS +E+   V EFVAGD+S
Sbjct: 464 GLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRS 523

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDI---SEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           HP+  EIY KL+E+    +  G++P          D     KE+A+  HSEKLA+AFGLI
Sbjct: 524 HPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLI 583

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+ PG  I+IVKNLR C DCH + KLVS V  R+++ RD+ RFHHF  GSC+C DYW
Sbjct: 584 STPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/466 (22%), Positives = 191/466 (40%), Gaps = 81/466 (17%)

Query: 3   SNSSISPPSTLTQETPLISP-----IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           S SS   PS   Q   L +      +  C S  +  ++H+  ++ G+  +  V  +L   
Sbjct: 12  SPSSTRHPSGGVQHGVLTADRAAALLAGCASARRASELHAAAVRAGVDQDKAVDFRL-QR 70

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNY 116
             +  G +  A  + R+ P P+   + + I  +S    H   + +  +ML S  + P  +
Sbjct: 71  AYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAH 130

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA------- 169
           T    L        +  G+ LH + +K       +V  AL+  Y   G+   A       
Sbjct: 131 TLSASLPACG---GLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGM 187

Query: 170 -------------------------RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
                                    R +FD     D++ WNAM  GY +  +  E  +LF
Sbjct: 188 QPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLF 247

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC---KIVPNLILENALTDMY 261
             M R GV P  V++VL LSA A+L   + G+  H +V      ++  N  +  AL DMY
Sbjct: 248 RRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMY 307

Query: 262 AACGEMGFALEIFGNI--KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
             CG +  A+ +FG++   ++D+++W A+V GY   G                       
Sbjct: 308 YKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHS--------------------- 346

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNK 378
                     REAL  F +++   + P + T + +L AC++ G ++ G E  ++  ++  
Sbjct: 347 ----------REALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYG 396

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK--DKFTWTAMIV 422
           ++  +     ++D+  + G VE+A  + + M R   D   W +++ 
Sbjct: 397 IEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLA 442



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 138/320 (43%), Gaps = 18/320 (5%)

Query: 43  GLLTNPTVQNKLVTFCCSEK-GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101
           G+  +P V +      C  K G +  A  +F  +P   +  WN M+ GY++       + 
Sbjct: 186 GMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALR 245

Query: 102 IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS---SVFVQNALIS 158
           ++  ML+S V PD  +    L    +    E G+ LH  V          +  V  ALI 
Sbjct: 246 LFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALID 305

Query: 159 TYCLCGEVDMARGIF-DVSYKD-DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
            Y  CG ++ A  +F D+   D D+V WNAM +GY       E    FG++  +G+ PT 
Sbjct: 306 MYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTD 365

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFALEIFG 275
           +T + VL+AC+    +D G+   R + +E  I P +     + D+    G +  A E+  
Sbjct: 366 ITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQ 425

Query: 276 NI--KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTAMIDGYLRVN 327
           ++     D + W +++        +++ ++  D +          YVL + M   Y    
Sbjct: 426 SMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNM---YAAAG 482

Query: 328 RFREALTLFREMQTSNIRPD 347
            +RE   +   M+ S I+ +
Sbjct: 483 NWREVGRVRAMMRASGIQKE 502


>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 613

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/604 (39%), Positives = 364/604 (60%), Gaps = 10/604 (1%)

Query: 47  NPTVQNKLVTFCCSEKGD-MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLD 105
           +P +   L++F  +   + + ++  +F +IP P + L+N +I+ +S   +  N + +Y  
Sbjct: 9   DPFLMTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKK 68

Query: 106 MLKSD--VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
           ML S   + PD +TFPFLLK   +      G ++H HV K GF+S+VFV NAL+  Y + 
Sbjct: 69  MLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVF 128

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G+   A  +FD S   D V++N + +G  R  +   + ++F EM    V P   T V +L
Sbjct: 129 GDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALL 188

Query: 224 SACAKLKDLDVGKRAHR--YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           SAC+ L+D  +G+  H   Y K      N +L NAL DMYA CG +  A  +  N   K 
Sbjct: 189 SACSLLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKS 248

Query: 282 -VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
            V +WT++V+ Y  RG+V++AR+ FDQM ERD V WTAMI GY     F+EAL LF E++
Sbjct: 249 GVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELE 308

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN--KVKNDIFVGNALIDMYCKCGD 398
              + PDE  +V+ L+ACA LGALELG  +    D++  +  ++     A++DMY KCG 
Sbjct: 309 DLGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGS 368

Query: 399 VEKAQRVFREML--RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           +E A  VF +     K  F + +++ GLA +G G+ ++ +F +M    + PDEVTYV +L
Sbjct: 369 IEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALL 428

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
            AC H+G+VD G+  F  M  ++G+ P   HYGCMVDLLGRAGHLNEA  +I+NMP K N
Sbjct: 429 CACGHSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMPFKAN 488

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           +++W ALL AC+V  D E+A +A++++L ++ D+ A YV+L N+    ++ D    +R+ 
Sbjct: 489 AVIWRALLSACKVDGDVELARLASQELLAMENDHGARYVMLSNMLTLMDKHDEAASVRRA 548

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           I + GI+K PG S +EMNG +H+F+AGDKSHP+ K     L ++   LK +G+   +S++
Sbjct: 549 IDNVGIQKPPGWSHVEMNGTLHKFLAGDKSHPEAKATEFMLRDIDMGLKSIGHSISVSKM 608

Query: 637 FLDV 640
             DV
Sbjct: 609 VFDV 612


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/716 (34%), Positives = 392/716 (54%), Gaps = 45/716 (6%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           P   T  + L++    C S+  +K+   +H    K+G+  +  + N L++     +  ++
Sbjct: 220 PDCFTMSSVLLA----CGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFE-RLR 274

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
            A +VF K+       WNTMI GY+++  H+  V +++DM+   V PD  +    ++   
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACG 333

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           +   ++ GK +H +++  GF+      N LI  Y  CG++  A+ +FD +   D VTWN+
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNS 393

Query: 187 MFSGYKRVKQFDETRKLFG--EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           + +GY +   + E  + F   +MERK   P SVT VL+LS  ++L D++ G+  H  V +
Sbjct: 394 LINGYTQSGYYKEGLESFKMMKMERK---PDSVTFVLLLSIFSQLADINQGRGIHCDVIK 450

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                 LI+ N+L D+YA CGEM   L++F                              
Sbjct: 451 FGFEAELIIGNSLLDVYAKCGEMDDLLKVF------------------------------ 480

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
              M   D + W  +I   +  +       +  EM+T  + PDE T++ IL  C+ L   
Sbjct: 481 -SYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVR 539

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
             G+ +  YI K+  ++++ +GNALI+MY KCG +E   +VF+ M  KD  TWTA+I   
Sbjct: 540 RQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAF 599

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
            + G G K+L  F  M  + ++PD V ++  + AC+H+GMV EG  +F  M   + +EP 
Sbjct: 600 GMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPR 659

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HY C+VDLL R+G L +A E I +MPMKP++ +WGALL ACR   +  +A+  +K+IL
Sbjct: 660 MEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKIL 719

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           EL+ D+   YVL+ NIYA   +WD  + +R  +  +G+KK PG S IE+   V+ F  GD
Sbjct: 720 ELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGD 779

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           KS  Q  ++   L+ +   +   GY+ D+     DV E+DK   +  HSE+LA+AFGL++
Sbjct: 780 KSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLN 839

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + PG  + ++KNLR+C DCH + K ++ +  RE++VRD  RFH FK G+CSC D+W
Sbjct: 840 TKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 163/603 (27%), Positives = 284/603 (47%), Gaps = 55/603 (9%)

Query: 3   SNSSISP-PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           SN + +P PS     + L+  + + ++  QL+ +HS  I  GL  +     KL++     
Sbjct: 8   SNFNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQV 67

Query: 62  KGDMKYACKVFRKI-PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           K D   +  VFR I P  +V LWN++I+  +        +  Y +M +  ++PD +TFP 
Sbjct: 68  K-DPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPS 126

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           ++    R + +E G  +H H ++ GF+S +++ NALI  Y    ++D AR +F+     D
Sbjct: 127 VINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRD 186

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
            V+WN++ SGY     +++   ++ +    G++P   T+  VL AC  L  +  G   H 
Sbjct: 187 SVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHG 246

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
            +++  I  ++I+ N L  MY     +  A  +F  +  KD ++W  ++ GY   G+   
Sbjct: 247 VIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGR--- 303

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
                    E    L+  MIDG++                     PD  +I S + AC  
Sbjct: 304 --------HEASVKLFMDMIDGFV---------------------PDMLSITSTIRACGQ 334

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
            G L++G++V  Y+  +  + D    N LIDMY KCGD+  AQ VF     KD  TW ++
Sbjct: 335 SGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSL 394

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I G   +G+  + L+ F +M++    PD VT+V +LS  +    +++GR    D+ I+ G
Sbjct: 395 INGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDV-IKFG 452

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD------AE 534
            E        ++D+  + G +++ L+V   M    + I W  ++ A  VH D        
Sbjct: 453 FEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVI-ASSVHFDDCTVGFQM 510

Query: 535 MAEMAAKQILELDPDNEAVYVLL--CNIYAACNRWDNFRELRQMILDRGIKKTP--GCSM 590
           + EM  + ++   PD   V  +L  C++ A   +    +E+   I   G +     G ++
Sbjct: 511 INEMRTEGLM---PDEATVLGILPMCSLLAVRRQG---KEIHGYIFKSGFESNVPIGNAL 564

Query: 591 IEM 593
           IEM
Sbjct: 565 IEM 567


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/685 (35%), Positives = 371/685 (54%), Gaps = 47/685 (6%)

Query: 41  KLGLL-TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNG 99
           K+GL  T+  V + L+    +  GD+  A KVF  +   +V +W  +I  Y + +  +  
Sbjct: 180 KMGLWGTDVAVGSALIDML-ARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEA 238

Query: 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
           V ++LD L+    PD YT   ++   T   +V  G +LH   L+ G  S   V   L+  
Sbjct: 239 VELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDM 298

Query: 160 YC---LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK-QFDETRKLFGEMERKGVLPT 215
           Y    +   +D A  +F+   K+DV++W A+ SGY +   Q ++   LFGEM  + + P 
Sbjct: 299 YAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPN 358

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
            +T   +L +CA + D D G++ H +V +        + NAL  MYA  G M        
Sbjct: 359 HITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCM-------- 410

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
                                  + AR+ F+Q+ ER  +    + +G            L
Sbjct: 411 -----------------------EEARRVFNQLYERSMI--PCITEG--------RDFPL 437

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
              +   ++     T  S+++A A++G L  G+ +     K    +D FV N+L+ MY +
Sbjct: 438 DHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSR 497

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG +E A R F E+  ++  +WT+MI GLA +G+ +++L +F  M+   + P++VTY+ V
Sbjct: 498 CGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAV 557

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           LSAC+H G+V EG+EYF  M   HG+ P   HY CMVDLL R+G + EALE I  MP+K 
Sbjct: 558 LSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKA 617

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           +++VW  LLGACR H + E+ E+ AK ++EL+P + A YVLL N+YA    WD    +R 
Sbjct: 618 DALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRS 677

Query: 576 MILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
            + D  + K  G S +E+    HEF AGD SHP+ ++IY KLD +   +K +GY+PD S 
Sbjct: 678 AMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSI 737

Query: 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
           V  D+ +E KE+ + QHSEK+A+AFGLI++     IRI KNLR+C DCH   K +S    
Sbjct: 738 VLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATR 797

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           RE+I+RD  RFH  K G CSC +YW
Sbjct: 798 REIILRDSNRFHRMKDGECSCGEYW 822



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 177/391 (45%), Gaps = 44/391 (11%)

Query: 131 VEFGKELHCHVLKFGF-DSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMF 188
           +  G+ LH  +L+    D    V N+L++ Y  CG V  AR +FD +    D+V+W AM 
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMA 123

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           S   R      +  L GEM   G+LP + T+     AC                      
Sbjct: 124 SCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHAC---------------------F 162

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
           P+ +       +     +MG    ++G     DV   +A++      G +  AR+ FD +
Sbjct: 163 PHELYCLVGGVVLGLVHKMG----LWGT----DVAVGSALIDMLARNGDLASARKVFDGL 214

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
            E+  V+WT +I  Y++     EA+ LF +       PD +T+ S+++AC  LG++ LG 
Sbjct: 215 IEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGL 274

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCG---DVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            + +   +  + +D  V   L+DMY K      ++ A +VF  M + D  +WTA+I G  
Sbjct: 275 QLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYV 334

Query: 426 ING-HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
            +G   +K + +F +ML  SI P+ +TY  +L +C      D GR+  A     H I+ N
Sbjct: 335 QSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHA-----HVIKSN 389

Query: 485 EAHY----GCMVDLLGRAGHLNEALEVIKNM 511
           +A        +V +   +G + EA  V   +
Sbjct: 390 QASAHTVGNALVSMYAESGCMEEARRVFNQL 420



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           LIS   +   + + +Q+H+ ++K G  ++  V N LV+   S  G ++ AC+ F ++   
Sbjct: 456 LISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSM-YSRCGYLEDACRSFNELKDR 514

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           +V  W +MI G ++    +  + ++ DM+ + V+P++ T+  +L   +    V  GKE
Sbjct: 515 NVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKE 572


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/658 (35%), Positives = 355/658 (53%), Gaps = 29/658 (4%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G +  A KVF  +P  SV  WN+MI  YS  +       I+  M     R D  TF  +L
Sbjct: 59  GSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSIL 118

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
                   ++ GK +   + +  F+  +FV  ALI+ Y  C   + A  +F    + +++
Sbjct: 119 DACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLI 178

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           TW+A+ + +       E  + F  M+++G+LP  VT + +L+       L+   R H  +
Sbjct: 179 TWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLI 238

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            E  +     + NAL ++Y  C                               G++D+A 
Sbjct: 239 TEHGLDDTTTMSNALVNVYGRC-----------------------------ETGELDVAE 269

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
               +M E+    W  +I+GY    R REAL  ++ +Q   I  D+ T +S+L AC +  
Sbjct: 270 VILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSST 329

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
           +L  G+ + +   +  + +D+ V NAL +MY KCG +E A+R+F  M  +   +W  M+ 
Sbjct: 330 SLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQ 389

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
             A +G  ++ L +  +M +  +  + +T+V VLS+C+H G++ EG +YF  +    GIE
Sbjct: 390 AYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIE 449

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
               HYGC+VDLLGRAG L EA + I  MP +P  + W +LLGACRVH+D +  ++AA++
Sbjct: 450 VKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARK 509

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           +LELDP N +  V+L NIY+    W N  +LR+ +  R +KK PG S I++   VHEF  
Sbjct: 510 LLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRV 569

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
            D SHP+  EIY K++E+   ++  GY+PD   V  DV EE KE  +  HSEKLA+AFGL
Sbjct: 570 RDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGL 629

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IS+    ++ I KNLR+C DCH   K +S +  RE++VRD  RFHHF+ GSCSCKDYW
Sbjct: 630 ISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 207/440 (47%), Gaps = 50/440 (11%)

Query: 97  KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
           K  V+ +L++L S V PD               A+  GK +H  V +      VFV  AL
Sbjct: 7   KANVITFLNVLNSVVDPD---------------ALRKGKFIHSCVRESEHSLDVFVNTAL 51

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           ++TY  CG +  AR +FD      V TWN+M S Y   ++  E   +F  M+ +G     
Sbjct: 52  VNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDR 111

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
           VT + +L AC   ++L  GK     + E     +L +  AL  MYA C     A ++FG 
Sbjct: 112 VTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGR 171

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           +K K++I+W+AI+T + + G    A +Y                               F
Sbjct: 172 MKQKNLITWSAIITAFADHGHCGEALRY-------------------------------F 200

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY--C 394
           R MQ   I P+  T +S+L        LE    +   I ++ + +   + NAL+++Y  C
Sbjct: 201 RMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRC 260

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
           + G+++ A+ + +EM  +    W  +I G  ++G   ++L+ + ++   +I  D+VT++ 
Sbjct: 261 ETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFIS 320

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           VL+ACT +  + EG+   ++  ++ G++ +      + ++  + G +  A  +  +MP++
Sbjct: 321 VLNACTSSTSLAEGKMIHSN-AVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIR 379

Query: 515 PNSIVWGALLGACRVHRDAE 534
            +++ W  +L A   H ++E
Sbjct: 380 -SAVSWNGMLQAYAQHGESE 398



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 143/283 (50%), Gaps = 7/283 (2%)

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           DV   TA+V  Y   G +  AR+ FD MP R    W +MI  Y    R  EA  +F+ MQ
Sbjct: 44  DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQ 103

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
               R D  T +SIL AC N   L+ G+ V+  I +   + D+FVG ALI MY +C   E
Sbjct: 104 HEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPE 163

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA-C 459
            A +VF  M +K+  TW+A+I   A +GH  ++L  F  M +  I+P+ VT++ +L+   
Sbjct: 164 NAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFT 223

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR--AGHLNEALEVIKNMPMKPNS 517
           T +G+ +  R +   +  +HG++        +V++ GR   G L+ A  +++ M  +   
Sbjct: 224 TPSGLEELSRIHL--LITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQI 280

Query: 518 IVWGALLGACRVH-RDAEMAEMAAKQILELDPDNEAVYVLLCN 559
             W  L+    +H R  E  E   +  LE  P ++  ++ + N
Sbjct: 281 TAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLN 323



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 1/210 (0%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT-FCCSEKGDMKYACKVFRKIPR 77
           L++   T   + +L +IH    + GL    T+ N LV  +   E G++  A  + +++  
Sbjct: 218 LLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDE 277

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
             +  WN +I GY+     +  +  Y  +    +  D  TF  +L   T   ++  GK +
Sbjct: 278 QQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMI 337

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H + ++ G DS V V+NAL + Y  CG ++ AR IFD       V+WN M   Y +  + 
Sbjct: 338 HSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGES 397

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACA 227
           +E  KL  +ME++GV    +T V VLS+C+
Sbjct: 398 EEVLKLIRKMEQEGVKLNGITFVSVLSSCS 427



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 116/264 (43%), Gaps = 17/264 (6%)

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M    ++ +  T +++L +  +  AL  G+++ + + +++   D+FV  AL++ Y KCG 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           +  A++VF  M  +   TW +MI   +I+    ++  +F +M       D VT++ +L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 459 CTHTGMVDEG---REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           C +   +  G   RE  ++ + +  +    A    ++ +  R      A +V   M  K 
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTA----LITMYARCRSPENAAQVFGRMKQK- 175

Query: 516 NSIVWGALLGACRVHRDAEMA-----EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           N I W A++ A   H     A      M  + IL     N   ++ L N +   +  +  
Sbjct: 176 NLITWSAIITAFADHGHCGEALRYFRMMQQEGIL----PNRVTFISLLNGFTTPSGLEEL 231

Query: 571 RELRQMILDRGIKKTPGCSMIEMN 594
             +  +I + G+  T   S   +N
Sbjct: 232 SRIHLLITEHGLDDTTTMSNALVN 255


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/615 (38%), Positives = 356/615 (57%), Gaps = 39/615 (6%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S ++ C S+ QLKQIH+Q     LLTN   +     +  ++  D  YA   F  I  P+ 
Sbjct: 37  SLLQQCLSIKQLKQIHAQ-----LLTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPTE 91

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
             +N MI+G S   +  +  L +   +K   ++P+N T+PFL    +  +AVE G+  HC
Sbjct: 92  YSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHC 151

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            V++ G D    V ++LI+ Y  CG++  AR +FD   + D+V+WN+M SGY +++   E
Sbjct: 152 SVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGE 211

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
              LF EM   G  P  +++V VL AC +L DL +G     +V E K+  N  + +AL  
Sbjct: 212 AVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIH 271

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY  CG               D++S                AR+ FD M ++D V W AM
Sbjct: 272 MYGKCG---------------DLVS----------------ARRIFDSMKKKDKVTWNAM 300

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I GY +     EA+ LF++M+ S+  PD+ T++ IL+ACA++GAL+LG+ V+ Y  +   
Sbjct: 301 ITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGF 360

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
           ++D++VG AL+DMY KCG ++ A RVF  M +K++ +W AMI  LA +G   ++L +F  
Sbjct: 361 QDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKS 420

Query: 440 MLR--ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           M+    ++ P+++T+VGVLSAC H G+VDEGR  F  M+   G+ P   HY CMVDL  R
Sbjct: 421 MMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSR 480

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
           AGHL EA + +  MP KP+ ++ GALLGAC+  ++ +++E   K +LEL+P N   YV+ 
Sbjct: 481 AGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVIS 540

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
             +YA   RWD+   +R ++  +G+ KTPGCS I++N  +HEF AGD  H +  EI+  L
Sbjct: 541 SKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQIL 600

Query: 618 DEMTSDLKFVGYMPD 632
           D +  DL+  GY+P+
Sbjct: 601 DLLIDDLRREGYIPN 615


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/689 (34%), Positives = 383/689 (55%), Gaps = 38/689 (5%)

Query: 35  IHSQTIKLGLLTNPTVQNKLV---TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           IH+   KLG   N  V + L+   + C    G + +A  VF  I       W  M+  YS
Sbjct: 172 IHACACKLGHDRNAFVGSSLIDAYSLC----GAVSHARCVFDGIIWKDAVTWTAMVSCYS 227

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
             D  ++ +  +  M  +  +P+ +    +LK      +   GK +H   +K   D+   
Sbjct: 228 ENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPH 287

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V  AL+  Y  CG ++ AR +F++   DDV+ W+ + S Y +  Q ++  ++F  M R  
Sbjct: 288 VGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSS 347

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V+P   ++  VL ACA +  LD+G++ H  V +      L + NAL D+YA C  M  +L
Sbjct: 348 VVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSL 407

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           EIF ++++ + +SW  I+                                GY +     +
Sbjct: 408 EIFRSLRDANEVSWNTIIV-------------------------------GYCQSGFAED 436

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL++F+EM+ +++   + T  S+L ACAN  +++    + + I+K+   ND  V N+LID
Sbjct: 437 ALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLID 496

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
            Y KCG +  A +VF  +++ D  +W A+I G A++G    +L++F++M ++   P++VT
Sbjct: 497 TYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVT 556

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +V +LS C  TG+V++G   F  MT+ H I+P+  HY C+V LLGRAG LN+AL+ I ++
Sbjct: 557 FVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDI 616

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P  P+ +VW ALL +C VH++  + + +A+++LE++P +E  YVLL N+YAA    D   
Sbjct: 617 PSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVA 676

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            LR+ + + G+KK  G S +E+ G VH F  G   HP  + I   L+ +       GY+P
Sbjct: 677 LLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYVP 736

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           DI+ V  DV EE+K R ++ HSE+LA+A+GL  + PG  IRI+KNLR C+DCH + K++S
Sbjct: 737 DINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTVFKVIS 796

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +  RE++VRD  RFHHF  G CSC DYW
Sbjct: 797 KIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 201/438 (45%), Gaps = 37/438 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K IH   +K    T P V   L+    ++ G ++ A  VF  IP   V LW+ +I  Y++
Sbjct: 271 KGIHGCAVKTLCDTEPHVGGALLDMY-AKCGYIEDARTVFEIIPHDDVILWSFLISRYAQ 329

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              ++    ++L M++S V P+ ++   +L+       ++ G+++H  V+K G++S +FV
Sbjct: 330 SYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFV 389

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL+  Y  C  ++ +  IF      + V+WN +  GY +    ++   +F EM    V
Sbjct: 390 GNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHV 449

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
           L T VT   VL ACA    +    + H  +++     + I+ N+L D YA CG +  AL+
Sbjct: 450 LSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALK 509

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F +I   DV+SW AI++GY   G                               R  +A
Sbjct: 510 VFESIIQCDVVSWNAIISGYALHG-------------------------------RATDA 538

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALID 391
           L LF  M  S+ +P++ T V++L+ C + G +  G     +    +++K  +     ++ 
Sbjct: 539 LELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVR 598

Query: 392 MYCKCGDVEKAQRVFREMLRK-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DE 449
           +  + G +  A +   ++        W A++    +  H + +L  FS      I P DE
Sbjct: 599 LLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVV--HKNVALGKFSAEKVLEIEPQDE 656

Query: 450 VTYVGVLSACTHTGMVDE 467
            TYV + +     G++D+
Sbjct: 657 TTYVLLSNMYAAAGILDQ 674



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 207/445 (46%), Gaps = 55/445 (12%)

Query: 98  NGVLIYLD-MLKSDVRP--DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV--FV 152
           N  L +LD  L S   P  D+Y    LL+          G+ +H  V++ G  + +  F 
Sbjct: 27  NAALQWLDDELASLALPKLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFC 86

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG- 211
            N L++ Y   G +  AR +FD   + ++V++  +  GY     F+E   LF  ++R+G 
Sbjct: 87  ANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGH 146

Query: 212 -----VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP--NLILENALTDMYAAC 264
                VL T + +++ + A         G     +   CK+    N  + ++L D Y+ C
Sbjct: 147 EVNHFVLTTILKVLVAMDA--------PGLTCCIHACACKLGHDRNAFVGSSLIDAYSLC 198

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
           G +  A  +F  I  KD ++WTA+V+ Y             + +PE              
Sbjct: 199 GAVSHARCVFDGIIWKDAVTWTAMVSCYSE-----------NDIPE-------------- 233

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
                 +AL  F +M+ +  +P+ F + S+L A   L +  LG+ +     K     +  
Sbjct: 234 ------DALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPH 287

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           VG AL+DMY KCG +E A+ VF  +   D   W+ +I   A +   +++ +MF +M+R+S
Sbjct: 288 VGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSS 347

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           ++P+E +  GVL AC +   +D G++   ++ I+ G E        ++D+  +  ++  +
Sbjct: 348 VVPNEFSLSGVLQACANVAFLDLGQQ-IHNLVIKLGYESELFVGNALMDVYAKCRNMENS 406

Query: 505 LEVIKNMPMKPNSIVWGALL-GACR 528
           LE+ +++    N + W  ++ G C+
Sbjct: 407 LEIFRSL-RDANEVSWNTIIVGYCQ 430


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 266/762 (34%), Positives = 404/762 (53%), Gaps = 101/762 (13%)

Query: 26  CESMH--QLKQIHSQTIKLGLLTNPT--VQNKLVTFCCSEKGDMKYACKVFRKIPRPSVC 81
           CE+ +  Q+K++H + I+   LTNP   + N L+     + GD+K A  VF  IP+P++ 
Sbjct: 16  CEARNRAQVKKLHCRIIRT--LTNPETFLYNNLIN-TYGKLGDLKNARNVFDHIPQPNLF 72

Query: 82  LWNTMIKGYSRI----------DSHKN---------------------GVLIYLDMLK-S 109
            WNT++  YS++          DS  N                      V +Y  MLK  
Sbjct: 73  SWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDG 132

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
            V  +  TF  +L   +    V+ G+++H  + KFG+ S +FV + L+  Y   G ++ A
Sbjct: 133 SVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDA 192

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK---------------GVLP 214
             IF+   + ++V +N M +G  R +   E  +LF  M  K               G+  
Sbjct: 193 NRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFK 252

Query: 215 TSV----------------TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
            +V                T   VL+AC     LD GK+ H Y+       N+ + +AL 
Sbjct: 253 EAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALL 312

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMY  C  + +A  +F  +++K+VIS                               WTA
Sbjct: 313 DMYCKCRNVKYAEAVFRKMRHKNVIS-------------------------------WTA 341

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           M+ GY +     EA+ +F +MQ + I PD+FT+ S++++CANL +LE G         + 
Sbjct: 342 MLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASG 401

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +   + V NALI +Y KCG +E A ++F EM  +D+ +WTA++ G A  G  ++++ +F 
Sbjct: 402 LICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFE 461

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
            ML   I+PD VT+VGVLSAC+  G+V++G  YF  M  +H I P   HY CM+DLL RA
Sbjct: 462 TMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRA 521

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G L EA   I  MP  P++I W  LL +CR++ + E+ + AA+ + +L+P N A Y+LL 
Sbjct: 522 GRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLS 581

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           +IYAA  +WD+  +LR+ + + G+KK PG S I+    VH F A D+S P + +IY KL+
Sbjct: 582 SIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLE 641

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
            +   +   GY+PD+S V  DV + +K + +  HSEKLA+AFGL+    G+ IR+VKNLR
Sbjct: 642 SLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLR 701

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C DCH   K +S +  RE++VRD  RFH FK G CSC D+W
Sbjct: 702 VCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 148/335 (44%), Gaps = 34/335 (10%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
            L  C + ++    K+ H  +      P   L N L + Y   G++  A  +F +I   +
Sbjct: 11  ALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPN 70

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-Q 340
           + SW  +++ Y   G +   ++ FD MP  D V W +++ GY       E++ ++  M +
Sbjct: 71  LFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLK 130

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
             ++  +  T  ++L   +N G ++LG  +   I K   ++ +FVG+ L+DMY K G + 
Sbjct: 131 DGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFIN 190

Query: 401 KAQRVFRE-------------------------------MLRKDKFTWTAMIVGLAINGH 429
            A R+F E                               M  KD  +WT +I GL  NG 
Sbjct: 191 DANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGL 250

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
             +++D F +M       D+ T+  VL+AC     +DEG++  A   I+   + N     
Sbjct: 251 FKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHA-YIIRTDYQDNIFVGS 309

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
            ++D+  +  ++  A  V + M  K N I W A+L
Sbjct: 310 ALLDMYCKCRNVKYAEAVFRKMRHK-NVISWTAML 343



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 3/173 (1%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           +IS      S+ +  Q H Q +  GL+   TV N L+T    + G +++A ++F ++   
Sbjct: 377 VISSCANLASLEEGAQFHGQALASGLICFVTVSNALITL-YGKCGSLEHAHQLFHEMKIR 435

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE-L 137
               W  ++ GY++       + ++  ML   + PD  TF  +L   +R   VE G    
Sbjct: 436 DEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYF 495

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFS 189
            C V +            +I      G ++ A+   + + +  D + W  + S
Sbjct: 496 ECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLS 548


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/622 (37%), Positives = 346/622 (55%), Gaps = 33/622 (5%)

Query: 100 VLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
           VL  LD+L + ++ P    +   +    +   +E  +++H H+    F    F+ N+LI 
Sbjct: 35  VLRDLDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIH 94

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            YC C  V  AR +FD   + D+V+W ++ +GY +     E   L   M +    P   T
Sbjct: 95  MYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFT 154

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
              +L A     D   G++ H    +C    ++ + +AL DMYA CG+M           
Sbjct: 155 FASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKM----------- 203

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
                               DMA   FD++  ++ V W A+I G+ R      AL  F E
Sbjct: 204 --------------------DMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAE 243

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M  +      FT  S+ ++ A LGALE G+WV  ++ K++ K   FVGN L+DMY K G 
Sbjct: 244 MLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGS 303

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           +  A++VF  +  KD  TW +M+   A  G G +++  F +M ++ +  +++T++ +L+A
Sbjct: 304 MIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTA 363

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C+H G+V EG+ YF +M  ++ +EP   HY  +V LLGRAG LN AL  I  MPM+P + 
Sbjct: 364 CSHGGLVKEGKRYF-EMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAA 422

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           VWGALL ACR+H++A++ + AA  + ELDPD+    VLL NIYA+  +WD    +R M+ 
Sbjct: 423 VWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMK 482

Query: 579 DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL 638
             G+KK P CS +EM   VH FVA D +HPQ +EIY    E++  ++  GY+PD+  V L
Sbjct: 483 TTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLL 542

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
            V +++KE  +  HSEKLA+AF LI    G TIRI+KN+R+C DCH   K +S V+ RE+
Sbjct: 543 HVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREI 602

Query: 699 IVRDKTRFHHFKHGSCSCKDYW 720
           +VRD  RFHHF  GSCSC DYW
Sbjct: 603 VVRDTNRFHHFSSGSCSCGDYW 624



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 32/350 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            I+     +++   ++IH+         +  + N L+   C  +  +  A  VF ++ R 
Sbjct: 57  FITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLD-ARNVFDQMRRK 115

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            +  W ++I GY++ D     + +   MLK   +P+ +TF  LLK          G+++H
Sbjct: 116 DMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIH 175

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
              +K G+   V+V +AL+  Y  CG++DMA  +FD     + V+WNA+ SG+ R    +
Sbjct: 176 ALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGE 235

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
                F EM R G   T  T   V S+ A+L  L+ GK  H +V + +      + N L 
Sbjct: 236 SALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLL 295

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA  G M  A ++F  + NKD+++W +++T +   G                      
Sbjct: 296 DMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLG-------------------- 335

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                      +EA++ F EM+ S +  ++ T + ILTAC++ G ++ G+
Sbjct: 336 -----------KEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGK 374


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/621 (38%), Positives = 356/621 (57%), Gaps = 35/621 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           +++H  + +    SS  V    IS+      VD A  IF      +   +NA+  G    
Sbjct: 59  RQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAEN 118

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
            +F+ +   F  M +  + P  +T   VL + A L +  VG+  H  + +  +  +  + 
Sbjct: 119 SRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVR 178

Query: 255 NALTDMYAACGEMGFALEIFG----NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
            +L DMY    E+G AL++F     ++KN  V+ W  ++ GY   G +  A + FD MP+
Sbjct: 179 VSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPK 238

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI-------------------------- 344
           +D   W ++I+G++++     A  LF +M   N+                          
Sbjct: 239 KDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCM 298

Query: 345 -----RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
                RP+++TIVS L+ACA +GAL+ G  +  Y+  N  K ++ +G AL+DMY KCG++
Sbjct: 299 LEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNI 358

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           E A++VF E   K    W+ MI G AI+GH  K+L  F  M      PD V ++ VL+AC
Sbjct: 359 EHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNAC 418

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H+G V+EG ++F +M   + IEP+  HY  +VD+LGRAG L+EAL+ I+ MP+ P+ +V
Sbjct: 419 SHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVV 478

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           WGAL  ACR H++ EMAE+A+K++L+L+P +   YV L N YA+  RWD+   +R  + D
Sbjct: 479 WGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRD 538

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
            G  K PG S IE++  +H FVAGD +H +  EIY KLDE+++  +  GY  +I  V  +
Sbjct: 539 HGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKEIECVLHN 598

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           + EE+KE A+  HSEKLA+AFG++S+ PG T+RIVKNLR+CVDCH   K  S +  RE+I
Sbjct: 599 IEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYASKMSKREII 658

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           +RD  RFHHF  G CSC DYW
Sbjct: 659 LRDMKRFHHFNDGVCSCGDYW 679



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 200/478 (41%), Gaps = 108/478 (22%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           ET  I  I    S H+L+QIH Q  +  + ++  V  + ++  CS    + YA  +F++ 
Sbjct: 42  ETHFIDLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFIS-SCSSLNSVDYAISIFQRF 100

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              +  L+N +I+G +     ++ +  ++ MLK  + PD  TFPF+LK          G+
Sbjct: 101 ELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGR 160

Query: 136 ELHCHVLKFG--FDS---------------------------------SVFVQNALISTY 160
            LHC +LKFG  FDS                                 SV + N LI  Y
Sbjct: 161 ALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGY 220

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL------- 213
           C  G++  A  +FD   K D  +WN++ +G+ ++      ++LF +M  K V+       
Sbjct: 221 CRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVN 280

Query: 214 ------------------------PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
                                   P   TIV  LSACAK+  LD G R H Y+       
Sbjct: 281 GFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKL 340

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           NL++  AL DMYA CG +  A ++F   K K ++ W+ ++ G+   G    A QYF+   
Sbjct: 341 NLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFE--- 397

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-- 367
                 W                      M+ +  +PD    +++L AC++ G +  G  
Sbjct: 398 ------W----------------------MKFTGTKPDSVVFLAVLNACSHSGQVNEGLK 429

Query: 368 ---EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
                 + Y+ +  +K+   V    +DM  + G +++A +  R M +  D   W A+ 
Sbjct: 430 FFDNMRRGYLIEPSMKHYTLV----VDMLGRAGRLDEALKFIRAMPITPDFVVWGALF 483



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 126/275 (45%), Gaps = 5/275 (1%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GDM  A ++F K+P  +V  W TM+ G+S+    +  +  +  ML+   RP++YT    L
Sbjct: 255 GDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSAL 314

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
               +  A++ G  +H ++   GF  ++ +  AL+  Y  CG ++ A  +F  + +  ++
Sbjct: 315 SACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLL 374

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
            W+ M  G+     F +  + F  M+  G  P SV  + VL+AC+    ++ G +    +
Sbjct: 375 IWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNM 434

Query: 243 KECKIV-PNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDM 300
           +   ++ P++     + DM    G +  AL+    +    D + W A+         V+M
Sbjct: 435 RRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEM 494

Query: 301 AR---QYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           A    +   Q+  +    +  + + Y  V R+ +A
Sbjct: 495 AELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDA 529



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 133/348 (38%), Gaps = 72/348 (20%)

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR----GQVDMARQYFDQM 308
           LE    D+  A        +I G +   +V S + +VT +I+       VD A   F + 
Sbjct: 41  LETHFIDLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRF 100

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
             ++  L+ A+I G    +RF  +++ F  M    I PD  T   +L + A L    +G 
Sbjct: 101 ELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGR 160

Query: 369 WVKTYIDKNKVKNDIFVGNALIDM-----------------------------------Y 393
            +   I K  ++ D FV  +L+DM                                   Y
Sbjct: 161 ALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGY 220

Query: 394 CKCGDVEKAQRVFREMLRKDK-------------------------------FTWTAMIV 422
           C+ GD+ KA  +F  M +KD                                 +WT M+ 
Sbjct: 221 CRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVN 280

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G + NG  +K+L+ F  ML     P++ T V  LSAC   G +D G      ++  +G +
Sbjct: 281 GFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLS-GNGFK 339

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            N      +VD+  + G++  A +V      K   ++W  ++    +H
Sbjct: 340 LNLVIGTALVDMYAKCGNIEHAEKVFHETKEK-GLLIWSVMIWGWAIH 386


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/554 (40%), Positives = 349/554 (62%), Gaps = 34/554 (6%)

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ-FDETRKLFGEMERKGVL-PTSVTIVL 221
           G++D AR +F    + ++ +WN+M  G  + +    E   LF +M R+G   P + T+  
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 166

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           VL AC+ +  L+ G++ H  V +     +  +E AL + YA C               +D
Sbjct: 167 VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKC---------------ED 211

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           ++                +A + FD++ +R+ V W+ MI GY R+    EAL LFR+MQ 
Sbjct: 212 IV----------------LASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQK 255

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
           + + PDE T+VS+++ACA  GAL+ G+WV  YI+K  ++ D+ +  AL++MY KCG +E+
Sbjct: 256 AGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIER 315

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A+ VF  M  KD   W++MIVGLAING  + +L+ F +M  A + P+ VT++GVLSAC H
Sbjct: 316 AKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAH 375

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
           +G+V EGR Y++ M ++ GI P+   YGCMVDLL RA  + +A  +++ MP+ PN ++W 
Sbjct: 376 SGLVSEGRRYWSSM-LEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWR 434

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
            LL  C+  ++ + +E+ A+++LEL+P N   Y+LL N+YA+ ++W+   ++R+ +   G
Sbjct: 435 TLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMG 494

Query: 582 IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
           IK  PGCS IE++G+VHEFV GD SHP+  E+   L +++  +  VG+ P IS+V  +V 
Sbjct: 495 IKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVV 554

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
           +E+KE A+ +HSE+LA+A+GL+ +   + IRIVKNLR+C DCH + K++S  Y RE+IVR
Sbjct: 555 DEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVR 614

Query: 702 DKTRFHHFKHGSCS 715
           D+ RFH F +GSCS
Sbjct: 615 DRVRFHKFVNGSCS 628



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 222/433 (51%), Gaps = 37/433 (8%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQN--KLVTFCC-SEKG 63
           +SP   L +E  +   I  C SM  L+QIH++ +   +  +       K++ FC  S  G
Sbjct: 48  VSPEEVLEEEERIALLIRKCRSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYG 107

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDS-HKNGVLIYLDMLKSDV-RPDNYTFPFL 121
           D+ YA K+F +I RP++  WN+MI+G S+  +  K  V+++  M++     P+ +T  F+
Sbjct: 108 DIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFV 167

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           LK  +   A+E G+++H +VLK GF SS FV+ AL++ Y  C ++ +A  +FD     ++
Sbjct: 168 LKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNL 227

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           V W+ M SGY R+   +E   LF +M++ GV+P  VT+V V+SACA    LD GK  H Y
Sbjct: 228 VAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAY 287

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           + +  I  +L L  AL +MYA CG +  A E+F  +  KD  +W++++ G    G  +  
Sbjct: 288 INKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAE-- 345

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                        +AL  F  M+ + ++P+  T + +L+ACA+ 
Sbjct: 346 -----------------------------DALEEFFRMEEAKVKPNHVTFIGVLSACAHS 376

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAM 420
           G +  G    + + +  +   + +   ++D+ C+   VE A  +   M +  +   W  +
Sbjct: 377 GLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTL 436

Query: 421 IVGLAINGHGDKS 433
           +VG   + + DKS
Sbjct: 437 LVGCKKSKNLDKS 449


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/615 (38%), Positives = 355/615 (57%), Gaps = 39/615 (6%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S ++ C S+ QLKQIH+Q     LLTN   +     +  ++  D  YA   F  I  P+ 
Sbjct: 37  SLLQQCLSIKQLKQIHAQ-----LLTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPTE 91

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
             +N MI+G S   +  +  L +   +K   ++P+N T+PFL    +  +AVE G+  HC
Sbjct: 92  YSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHC 151

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            V++ G D    V ++LI+ Y  CG++  AR +FD   + D+V+WN+M SGY +++   E
Sbjct: 152 SVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGE 211

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
              LF EM   G  P  +++V VL AC +L DL +G     +V E K+  N  + +AL  
Sbjct: 212 AVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIH 271

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY  CG               D++S                AR+ FD M ++D V W AM
Sbjct: 272 MYGKCG---------------DLVS----------------ARRIFDSMKKKDKVTWNAM 300

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I GY +     EA+ LF++M+ S+  PD+ T++ IL+ACA++GAL+LG+ V+ Y  +   
Sbjct: 301 ITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGF 360

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
           ++D++VG AL+DMY KCG ++ A RVF  M  K++ +W AMI  LA +G   ++L +F  
Sbjct: 361 QDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKS 420

Query: 440 MLR--ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           M+    ++ P+++T+VGVLSAC H G+VDEGR  F  M+   G+ P   HY CMVDL  R
Sbjct: 421 MMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSR 480

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
           AGHL EA + +  MP KP+ ++ GALLGAC+  ++ +++E   K +LEL+P N   YV+ 
Sbjct: 481 AGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVIS 540

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
             +YA   RWD+   +R ++  +G+ KTPGCS I++N  +HEF AGD  H +  EI+  L
Sbjct: 541 SKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQIL 600

Query: 618 DEMTSDLKFVGYMPD 632
           D +  DL+  GY+P+
Sbjct: 601 DLLIDDLRREGYIPN 615


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/622 (38%), Positives = 362/622 (58%), Gaps = 26/622 (4%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFG--FDSSVFVQNALISTYCLCGEVDMARGIFDV 175
           F  LL+   R  AV  G++LH      G  F  S F+ NAL+  Y  C     AR +FD 
Sbjct: 15  FRSLLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKLFDR 74

Query: 176 ---SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
              S+KD V      ++   R     +  + + +M ++ +    V ++  L AC+KL D 
Sbjct: 75  IPHSHKDSVD-----YTALIRCSHPLDALRFYLQMRQRALPLDGVALICALGACSKLGDS 129

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
           ++  + H  V +   + +  + N + D Y  CG +G A  +F  I+   V+SWT ++ G 
Sbjct: 130 NLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGV 189

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS---NIRPDEF 349
           +    V+  +  FD+MPER+ V WT +I GY+     +EA  L +EM          +  
Sbjct: 190 VKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSI 249

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKND--IFVGNALIDMYCKCGDVEKAQRVFR 407
           T+ S+L+AC+  G + +G WV  Y  K  V  D  + VG +L+DMY KCG +  A  VFR
Sbjct: 250 TLCSVLSACSQSGDVSVGRWVHCYAVK-AVGWDLGVMVGTSLVDMYAKCGRISAALMVFR 308

Query: 408 EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
            M R++   W AM+ GLA++G G   ++MF+ M+   + PD VT++ +LS+C+H+G+V++
Sbjct: 309 HMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVE-EVKPDAVTFMALLSSCSHSGLVEQ 367

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
           G +YF D+   +GI P   HY CMVDLLGRAG L EA +++K +P+ PN +V G+LLGAC
Sbjct: 368 GWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGSLLGAC 427

Query: 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPG 587
             H    + E   ++++++DP N   ++LL N+YA C + D    LR+++ +RGI+K PG
Sbjct: 428 YAHGKLRLGEKIMRELVQMDPLNTEYHILLSNMYALCGKADKANSLRKVLKNRGIRKVPG 487

Query: 588 CSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS-EVFLDVGE---- 642
            S I ++G +H F+AGDKSHP+T +IY+KLD+M   L+  GY+P+ + +V          
Sbjct: 488 MSSIYVDGQLHRFIAGDKSHPRTADIYMKLDDMICKLRLAGYVPNTNCQVLFGCSNGDDC 547

Query: 643 ----EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
               E+ E+ ++ HSEKLA+ FGL+S+     + I KNLR+C DCH   K+ S +Y RE+
Sbjct: 548 MEAFEEVEQVLFTHSEKLALCFGLMSTPSSSPLCIFKNLRICQDCHSAIKIASDIYKREI 607

Query: 699 IVRDKTRFHHFKHGSCSCKDYW 720
           +VRD+ RFH FK GSCSC DYW
Sbjct: 608 VVRDRYRFHSFKQGSCSCSDYW 629



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 105/249 (42%), Gaps = 44/249 (17%)

Query: 19  LISPIETCESM---HQLKQIHSQTIKLGLLTNPTVQNKLVT--FCCSEKGDMKYACKVFR 73
           LI  +  C  +   + + Q+H   +K G L +  V N ++     C   G+ +   +VF 
Sbjct: 116 LICALGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEAR---RVFE 172

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM--------------------------- 106
           +I  PSV  W  +++G  + +  ++G +++ +M                           
Sbjct: 173 EIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLL 232

Query: 107 LKSDVRPDNYTFPF-------LLKGFTRDIAVEFGKELHCHVLK-FGFDSSVFVQNALIS 158
           LK  V    + F         +L   ++   V  G+ +HC+ +K  G+D  V V  +L+ 
Sbjct: 233 LKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVD 292

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y  CG +  A  +F    + +VV WNAM  G           ++F  M  + V P +VT
Sbjct: 293 MYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVEE-VKPDAVT 351

Query: 219 IVLVLSACA 227
            + +LS+C+
Sbjct: 352 FMALLSSCS 360


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/601 (37%), Positives = 352/601 (58%), Gaps = 2/601 (0%)

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           LK  T+  A    K++H  ++K G +    + N L+  Y  C  +  A  +FD   + D 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHR 240
           V+W ++ + Y + K  ++T  +F  M     L P       +L ACA L  L +GK+ H 
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHA 128

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
                  V + +++++L DMYA CG    A  +F +I  K  +SWTA+++GY   G  D 
Sbjct: 129 RFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDE 188

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-PDEFTIVSILTACA 359
           A + F + P R+   WTA+I G ++     +   +F EM+   +   D   + S++ ACA
Sbjct: 189 AMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACA 248

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
           NL  L LG+ +   +  +  ++ +F+ NAL+DMY KC D+  A+ VF  ML +D  +WT+
Sbjct: 249 NLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTS 308

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           +IVG A +G   ++LD++ QM+ A I P+EVT+VG++ AC+H G+V +GR+ F  M   +
Sbjct: 309 IIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDY 368

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
            I P+   + C +DLL R+GHLNEA ++IK MP KP+   W ALL AC+ H + EM    
Sbjct: 369 RISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRI 428

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
           A ++L L+    + YVLL N+YA   +W+    +R+++ D  +K+ PG S I++      
Sbjct: 429 ADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQV 488

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA 659
           F AG+  HP   EI+  L E+ ++++  GY+PD S V  D+ E++KER ++ HSE+ A+A
Sbjct: 489 FHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVA 548

Query: 660 FGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
           +GL+ + PG  IRIVKNLR+C DCH   KL S +  +E+IVRD TR+HHFK G CSC D+
Sbjct: 549 YGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDF 608

Query: 720 W 720
           W
Sbjct: 609 W 609



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 205/458 (44%), Gaps = 72/458 (15%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           K+IH+Q +K GL     + N L+     C+   D  Y   +F ++P+     W +++  Y
Sbjct: 22  KKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHY---LFDEMPQRDHVSWASILTAY 78

Query: 91  SRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
           ++       + I+  M  +D ++PD++ +  LLK      ++  GK++H   +   F   
Sbjct: 79  NQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDD 138

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG---- 205
             V+++L+  Y  CG   +AR +FD       V+W AM SGY R    DE  +LF     
Sbjct: 139 DVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPV 198

Query: 206 ---------------------------EMERKGV-LPTSVTIVLVLSACAKLKDLDVGKR 237
                                      EM R+GV +   + +  V+ ACA L  L +GK+
Sbjct: 199 RNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQ 258

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H  V        L + NAL DMYA C ++  A  +F  + ++DV+SWT+I+ G    G 
Sbjct: 259 IHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHG- 317

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
                                         R +EAL L+ +M  + I+P+E T V ++ A
Sbjct: 318 ------------------------------RAKEALDLYDQMVLAEIKPNEVTFVGLIYA 347

Query: 358 CANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-DKF 415
           C++ G +  G +  K  I+  ++   + +    +D+  + G + +A+ + + M  K D+ 
Sbjct: 348 CSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEP 407

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
           TW A++     +G+ +  + +  ++L  + + +  TYV
Sbjct: 408 TWAALLSACKHHGNTEMGVRIADRLLSLN-MHEPSTYV 444



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 8/182 (4%)

Query: 18  PLI--SPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           PL+  S +  C ++  L   KQIH   I  G  +   + N LV    ++  D+  A  VF
Sbjct: 237 PLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMY-AKCSDILAARNVF 295

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
            ++    V  W ++I G ++    K  + +Y  M+ ++++P+  TF  L+   +    V 
Sbjct: 296 NRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVS 355

Query: 133 FGKELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSG 190
            G++L   +++ +    S+ +    +      G ++ A  +   + +K D  TW A+ S 
Sbjct: 356 KGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSA 415

Query: 191 YK 192
            K
Sbjct: 416 CK 417


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/646 (35%), Positives = 353/646 (54%), Gaps = 30/646 (4%)

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           +P+ ++  W  MI G S+       +  +  M      P  + F   ++      ++E G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K++HC  LKFG  S +FV + L   Y  CG +  A  +F+     D V+W AM  GY ++
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
            +F+E    F +M  + V      +   L AC  LK    G+  H  V +     ++ + 
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           NALTDMY+  G+M  A  +FG                      +D           R+ V
Sbjct: 181 NALTDMYSKAGDMESASNVFG----------------------IDSEC--------RNVV 210

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            +T +IDGY+   +  + L++F E++   I P+EFT  S++ ACAN  ALE G  +   +
Sbjct: 211 SYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 270

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K     D FV + L+DMY KCG +E+A + F E+    +  W +++     +G G  ++
Sbjct: 271 MKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAI 330

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            +F +M+   + P+ +T++ +L+ C+H G+V+EG +YF  M   +G+ P E HY C++DL
Sbjct: 331 KIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDL 390

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L EA E I  MP +PN+  W + LGACR+H D EM ++AA+++++L+P N    
Sbjct: 391 LGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGAL 450

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL NIYA   +W++ R +R  + D  +KK PG S +++    H F A D SHP+   IY
Sbjct: 451 VLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIY 510

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
            KLD +   +K  GY+P    V LD+ +  KE+ +++HSE++A+AF LIS   G  I + 
Sbjct: 511 EKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVK 570

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+CVDCH   K +S V  R++IVRD +RFHHF  GSCSC DYW
Sbjct: 571 KNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 193/423 (45%), Gaps = 46/423 (10%)

Query: 21  SPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S I  C S+  +   KQ+H   +K G+ +   V + L     S+ G M  ACKVF ++P 
Sbjct: 46  SAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMY-SKCGAMFDACKVFEEMPC 104

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
                W  MI GYS+I   +  +L +  M+  +V  D +     L       A +FG+ +
Sbjct: 105 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSV 164

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV-SYKDDVVTWNAMFSGYKRVKQ 196
           H  V+K GF+S +FV NAL   Y   G+++ A  +F + S   +VV++  +  GY   +Q
Sbjct: 165 HSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQ 224

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            ++   +F E+ R+G+ P   T   ++ ACA    L+ G + H  V +     +  + + 
Sbjct: 225 IEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI 284

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L DMY  CG +  A++ F  I +   I+W ++V+ +   GQ  +                
Sbjct: 285 LVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVF---GQHGLG--------------- 326

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
                        ++A+ +F  M    ++P+  T +S+LT C++ G +E G      +DK
Sbjct: 327 -------------KDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDK 373

Query: 377 NKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
                 +  G    + +ID+  + G +++A+     M    + F W + +    I  HGD
Sbjct: 374 T---YGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRI--HGD 428

Query: 432 KSL 434
           K +
Sbjct: 429 KEM 431


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/686 (34%), Positives = 376/686 (54%), Gaps = 32/686 (4%)

Query: 35   IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
            +H+   KLG   N  V + L+    S  G +  A +VF  I       W  M+  YS  D
Sbjct: 553  VHACACKLGHDRNAFVGSALID-AYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSEND 611

Query: 95   SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
              +N + I+  M  +  + + +    +L+      +V  GK +H   +K  +D+   V  
Sbjct: 612  CPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYG 671

Query: 155  ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
            AL+  Y  CG ++ AR  F++   DDV+ W+ M S Y +  Q ++  +LF  M R  V P
Sbjct: 672  ALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSP 731

Query: 215  TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
               ++  VL ACA +  LD+GK+ H +  +      L + NAL D+YA C +M  +LEIF
Sbjct: 732  NEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIF 791

Query: 275  GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
             ++++ + +SW  I+                                GY +      AL+
Sbjct: 792  SSLRDVNEVSWNTIIV-------------------------------GYSKSGFGEAALS 820

Query: 335  LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
            +FREM+ +++   + T  S+L ACA+  ++     V   I+K+   +D  V N+LID Y 
Sbjct: 821  VFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYA 880

Query: 395  KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
            KCG +  A+ +F  +   D  +W A+I G A++G    + ++F  M + SI  +++T+V 
Sbjct: 881  KCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVA 940

Query: 455  VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
            +LS C  TG+V +G   F  M + HGIEP+  HY C+V LLGRAG LN+AL  I ++P  
Sbjct: 941  LLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSA 1000

Query: 515  PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
            P+++VW ALL +C VH++ E+   +A+++LE++P +E  YVLL N+Y+A    D     R
Sbjct: 1001 PSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFR 1060

Query: 575  QMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS 634
            + + + G++K PG S +E+ G VH F  G + HP  + I   L+ +       GY+PD  
Sbjct: 1061 KSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTD 1120

Query: 635  EVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVY 694
            EV  D+ EE K R ++ HSE+LA+A+GL+ + PG  IRI+KNLR C+DCH + K++S + 
Sbjct: 1121 EVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIV 1180

Query: 695  DREVIVRDKTRFHHFKHGSCSCKDYW 720
             +E+IVRD  RFHHF+ G+CSC DYW
Sbjct: 1181 KQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 200/441 (45%), Gaps = 43/441 (9%)

Query: 33   KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            K IH+ ++K    T   V   L+    ++ G+++ A   F  +    V LW+ MI  Y++
Sbjct: 652  KGIHACSVKTLYDTERHVYGALLDMY-AKCGNIEDARLAFEMVTNDDVILWSLMISRYAQ 710

Query: 93   IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
             + ++    +++ M++S V P+ ++   +L+       ++ GK++H H +K G +S +FV
Sbjct: 711  CNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFV 770

Query: 153  QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             NALI  Y  C +++ +  IF      + V+WN +  GY +    +    +F EM    V
Sbjct: 771  GNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASV 830

Query: 213  LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
              T VT   VL ACA    ++   + H  +++     + I+ N+L D YA CG +  A E
Sbjct: 831  PSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDARE 890

Query: 273  IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
            IF  +K  D++SW AI++GY   GQ  MA++ FD M +                      
Sbjct: 891  IFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSK---------------------- 928

Query: 333  LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NA 388
                     ++I+ ++ T V++L+ C + G +  G    +  D  ++ + I         
Sbjct: 929  ---------NSIKANDITFVALLSVCGSTGLVSQG---LSLFDSMRLDHGIEPSMEHYTC 976

Query: 389  LIDMYCKCGDVEKAQRVFREMLR-KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
            ++ +  + G +  A     ++        W A++    +  H +  L  FS      I P
Sbjct: 977  IVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIV--HKNVELGRFSAEKVLEIEP 1034

Query: 448  -DEVTYVGVLSACTHTGMVDE 467
             DE TYV + +  +  G +D+
Sbjct: 1035 QDETTYVLLSNMYSAAGSLDQ 1055



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 201/469 (42%), Gaps = 50/469 (10%)

Query: 92  RIDSHKNGVLIYL-DMLKSDVRP----DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           R D   N  L +L D L S   P    D+Y +  LL+G         G+ +H HV++ G 
Sbjct: 400 RRDLAANAALQWLEDELTSLAFPWPGVDSYAYARLLQGCVARGDARGGRAVHGHVVRSGG 459

Query: 147 DS--SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
            +   +F  N L++ Y   G    A  +FD   + ++V++  +  G+    +F+E   LF
Sbjct: 460 LARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALF 519

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
             +  +G       +  VL     +  L +    H    +     N  + +AL D Y+ C
Sbjct: 520 QRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMC 579

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
           G +  A  +F  I  KD ++WTA+V+ Y             +  PE              
Sbjct: 580 GVVSDARRVFDGIVGKDAVAWTAMVSCYSE-----------NDCPE-------------- 614

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
                   L +F +M+ +  + + F + S+L A   L ++ LG+ +     K     +  
Sbjct: 615 ------NTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERH 668

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           V  AL+DMY KCG++E A+  F  +   D   W+ MI   A     +++ ++F +M+R+S
Sbjct: 669 VYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSS 728

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           + P+E +   VL AC +  ++D G++   +  I+ G E        ++DL  +   +  +
Sbjct: 729 VSPNEFSLSSVLQACANMPLLDLGKQ-IHNHAIKIGHESELFVGNALIDLYAKCSDMESS 787

Query: 505 LEVIKNMPMKPNSIVWGALL----------GACRVHRDAEMAEMAAKQI 543
           LE+  ++    N + W  ++           A  V R+   A + + Q+
Sbjct: 788 LEIFSSL-RDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQV 835



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 160/366 (43%), Gaps = 27/366 (7%)

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
           G +   D+     ++  Y   G    A + FD +PER+ V +  ++ G+     F EA  
Sbjct: 458 GGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASA 517

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LF+ ++      ++F + ++L     +  L L   V     K     + FVG+ALID Y 
Sbjct: 518 LFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYS 577

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA--SIIPDEVTY 452
            CG V  A+RVF  ++ KD   WTAM+   + N   + +L +FS+M  A   + P  +T 
Sbjct: 578 MCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTS 637

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH-YGCMVDLLGRAGHLNEALEVIKNM 511
           V   + C  + ++ +G    +  T+       E H YG ++D+  + G++ +A  +   M
Sbjct: 638 VLRAAVCLSSVVLGKGIHACSVKTLYD----TERHVYGALLDMYAKCGNIEDA-RLAFEM 692

Query: 512 PMKPNSIVWGALLGA-CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
               + I+W  ++    + +++ +  E+  + +      NE     L ++  AC      
Sbjct: 693 VTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNE---FSLSSVLQACANMP-L 748

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
            +L + I +  IK      +   N ++              ++Y K  +M S L+    +
Sbjct: 749 LDLGKQIHNHAIKIGHESELFVGNALI--------------DLYAKCSDMESSLEIFSSL 794

Query: 631 PDISEV 636
            D++EV
Sbjct: 795 RDVNEV 800


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/622 (37%), Positives = 361/622 (58%), Gaps = 36/622 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALI--STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H +V K G D+   +   L+  S   +   +D AR +F      DV   N +  G  
Sbjct: 22  KQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLA 81

Query: 193 RVKQFDETRKLFGEMERKGVLPT-SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
                  +   F EM R+   P  S +   +L A A  + L+ G + H       +  +L
Sbjct: 82  ESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHL 141

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT--------------------- 290
            +   L  MY+ CG + FA ++F  +   +V++W A+VT                     
Sbjct: 142 FVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFR 201

Query: 291 ----------GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
                     GY   G++++AR+ F +MP +D V W+ MI G+     F EA   FRE+Q
Sbjct: 202 NLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQ 261

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
              +RP+E ++   L+ACA+ GA+E G+ +  +I+K+     + V NAL+D Y KCG+V 
Sbjct: 262 QVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVG 321

Query: 401 KAQRVFREMLRKDKF-TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
            A+ VF  M  K    +WT+MI GLA++G+G++++ +F +M  + I PD + ++ +L AC
Sbjct: 322 MARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYAC 381

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H G++++G EYF  M   + IEP   HYGCMVDL GRAG L++A E I +MP+ P +I+
Sbjct: 382 SHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAII 441

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           W  LLGAC +H + ++AE   +++ ELDP+N   +VLL NIYA   +W +   +R+ + D
Sbjct: 442 WRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTD 501

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG-YMPDISEVFL 638
           + + KTPG SMIE++ +++ FVAG+  +  T+E Y KL E+   L+  G Y+P++  V  
Sbjct: 502 QRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLH 561

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
           D+ +E+KE +V +HSEKLA+AFG+     G  IRIVKNLR+C DCH + KL+S VY  E+
Sbjct: 562 DIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEI 621

Query: 699 IVRDKTRFHHFKHGSCSCKDYW 720
           +VRD++RFH FK GSCSC+DYW
Sbjct: 622 VVRDRSRFHSFKTGSCSCRDYW 643



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 210/476 (44%), Gaps = 98/476 (20%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD-MKYACKVFRKIPRPS 79
           S +  C S+  LKQ+H+   K GL T+P +  KL+        D + YA ++F   P P 
Sbjct: 10  SLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPD 69

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP-DNYTFPFLLKGFTRDIAVEFGKELH 138
           V + NT+I+G +  D+ +N ++ +++M +    P D+++F FLLK      ++E G +LH
Sbjct: 70  VFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLH 129

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA------------ 186
           C  +  G D+ +FV   L+S Y  CG V  A+ +F+  ++ +VV WNA            
Sbjct: 130 CQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVK 189

Query: 187 -------------------MFSGYKRVKQFDETRKLFGEMERK----------------- 210
                              M +GY +  + +  RKLF EM  K                 
Sbjct: 190 GADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGF 249

Query: 211 --------------GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
                         G+ P  V++   LSACA    ++ GK  H ++++   +  + + NA
Sbjct: 250 FYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNA 309

Query: 257 LTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           L D Y+ CG +G A  +F  +  K  ++SWT+++ G    G  +                
Sbjct: 310 LLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGE---------------- 353

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYI 374
                          EA+ LF EM+ S IRPD    +SIL AC++ G +E G E+     
Sbjct: 354 ---------------EAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMK 398

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           D   ++  I     ++D+Y + G ++KA      M +      W  ++   +I+G+
Sbjct: 399 DIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGN 454



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 3/256 (1%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           ++ G+++ A K+F ++P      W+TMI G++           + ++ +  +RP+  +  
Sbjct: 214 TKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLT 273

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYK 178
             L       A+EFGK LH  + K GF   V V NAL+ TY  CG V MAR +F+ +  K
Sbjct: 274 GALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEK 333

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
             +V+W +M +G       +E  +LF EME  G+ P  +  + +L AC+    ++ G   
Sbjct: 334 RSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEY 393

Query: 239 HRYVKEC-KIVPNLILENALTDMYAACGEMGFALEIFGNIKN-KDVISWTAIVTGYINRG 296
              +K+   I P +     + D+Y   G++  A E   ++      I W  ++      G
Sbjct: 394 FYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHG 453

Query: 297 QVDMARQYFDQMPERD 312
            V +A +  +++ E D
Sbjct: 454 NVKLAERVKERLSELD 469


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/440 (47%), Positives = 308/440 (70%)

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           D  + ++++   +N   +   R     + +  +  WT+MI GY++  + +EA+ LF +M+
Sbjct: 160 DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKME 219

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
            + ++ +E T+V++L ACA+LGAL+LG  +  Y +++  K ++ + N LIDMY KCG +E
Sbjct: 220 EAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLE 279

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
           +A +VF EM  +   +W+AMI GLA++G  +++L +FS M +  I P+ VT++G+L AC+
Sbjct: 280 EACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACS 339

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           H G++ EGR +FA MT  +GI P   HYGCMVDLL RAG L+EA E I NMPMKPN +VW
Sbjct: 340 HMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVW 399

Query: 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
           GALLGACRVH++ EMAE A K +LELDP N+  YV+L NIYA   RW++   +R+ + DR
Sbjct: 400 GALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDR 459

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
            +KKTPG S I ++GVVHEFVAG++SHP T++I+ + +E+  +++  GY+P+ S V LD+
Sbjct: 460 QVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDI 519

Query: 641 GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIV 700
            E +K + V +HSEKLA+ FGL+++     IRI+KNLR+C DCH   KL+S + +RE++V
Sbjct: 520 EEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVV 579

Query: 701 RDKTRFHHFKHGSCSCKDYW 720
           RD+ RFH F   SCSC+DYW
Sbjct: 580 RDRNRFHCFNDNSCSCRDYW 599



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 9/254 (3%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           W +MI GY +    K  + ++  M ++ V+ +  T   +L       A++ G  +H +  
Sbjct: 195 WTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSN 254

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           + GF  +V + N LI  Y  CG ++ A  +F+   +  VV+W+AM  G     + +E  +
Sbjct: 255 RHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALR 314

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILENALTDMY 261
           LF +M + G+ P  VT + +L AC+ +  +  G+R      ++  I+P +     + D+ 
Sbjct: 315 LFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLL 374

Query: 262 AACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           +  G +  A E   N+  K + + W A++        V+MA +    + E D      + 
Sbjct: 375 SRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELD-----PLN 429

Query: 321 DGYLRV--NRFREA 332
           DGY  V  N + EA
Sbjct: 430 DGYYVVLSNIYAEA 443


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/780 (32%), Positives = 402/780 (51%), Gaps = 88/780 (11%)

Query: 15  QETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKV 71
            E  L + + +C ++ +     +  +   K G  +NP + + L+ F  S+ G  + A +V
Sbjct: 115 NEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFY-SKCGCTQEAYRV 173

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           F  +    +  W  M+  +    S    + +Y  M+++ V P+ +TF  LL   +  + +
Sbjct: 174 FEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAA-SSFLGL 232

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
            +GK +H H++ +  + ++ ++ AL+  YC C  ++ A  +  ++ + DV  W A+ SG+
Sbjct: 233 NYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGF 292

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            +  +F E    F EME  GV+P + T   +L+AC+ +  LD+GK+ H  V    +  ++
Sbjct: 293 TQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDV 352

Query: 252 ILENALTDMYAACGEM-GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM-- 308
            + N+L DMY  C  M   A+  F  I + +VISWT+++ G+   G  + + + F  M  
Sbjct: 353 SVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQG 412

Query: 309 -------------------------------------PERDYVLWTAMIDGY-------- 323
                                                 + D V+  A++D Y        
Sbjct: 413 VGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDD 472

Query: 324 --------------------LRVNR---FREALTLFREMQTSNIRPDEFTIVSILTACAN 360
                                R+N+      AL +   M   ++R D F++ S L+A A 
Sbjct: 473 AWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAG 532

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           +  +E G+ +  Y  K+ + + I V N L+D+Y KCG +  A R F E+   D  +W  +
Sbjct: 533 IPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGL 592

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I GLA NGH   +L  F  M  A + PD++T + VL AC+H G+VD G +YF  M  +HG
Sbjct: 593 IFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHG 652

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           I P   HY C+VDLLGRAG L EA+ VI+ MP KP+++++  LLGAC++H +  + E  A
Sbjct: 653 IRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMA 712

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
           +Q LELDP + A YVLL N+Y    R +   + R+M+ +RG++K PG S +E   +VH F
Sbjct: 713 RQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLF 772

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
            AGD SHPQ  +I+ K++ + +  +  G                + RA+  HSEKLA+AF
Sbjct: 773 TAGDTSHPQIGKIHEKIESLIAQFRNQGIW------------YQENRALAHHSEKLAVAF 820

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           GLIS+ P   IRI+KN+R+C DCH     V+ + DRE+IVRD  RFH FK G CSC+ YW
Sbjct: 821 GLISTPPKAPIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGECSCRGYW 880



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 142/517 (27%), Positives = 249/517 (48%), Gaps = 39/517 (7%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IHS  IK+G   +  + N L++      G +  A ++F ++P   V  W  ++  Y +I 
Sbjct: 37  IHSPIIKMGFQEDMFLSNNLLSLYGKCFG-VAEARQLFDEMPCRDVASWTMLMSAYGKIG 95

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
           +H+  + ++  ML S   P+ +T    L+  +       G      V K GFDS+  + +
Sbjct: 96  NHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGS 155

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           ALI  Y  CG    A  +F+     D+V+W  M S +     + +  +L+  M + GV P
Sbjct: 156 ALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAP 215

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
              T V +L+A + L  L+ GK  H ++   +I  NL+L+ AL DMY  C  +  A+++ 
Sbjct: 216 NEFTFVKLLAASSFL-GLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVS 274

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
                 DV  WTAI++G+                                +  +FREA+T
Sbjct: 275 KLTLEYDVFLWTAIISGFT-------------------------------QSLKFREAIT 303

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
            F EM+TS + P+ FT   IL AC+++ AL+LG+ + + +    ++ND+ VGN+L+DMY 
Sbjct: 304 AFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYM 363

Query: 395 KCGD-VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
           KC + +E A R FR +   +  +WT++I G + +G  ++S+ +F  M    + P+  T  
Sbjct: 364 KCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLS 423

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            +L AC     + + R+      I++  + +      +VD     G +++A  V   M  
Sbjct: 424 TILGACGTIKSLTQTRKLHG-YIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKH 482

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           + + I + +L  A R+++     EMA   I  ++ D+
Sbjct: 483 R-DVITYTSL--ATRINQTGN-HEMALNIITHMNKDD 515



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/543 (24%), Positives = 231/543 (42%), Gaps = 69/543 (12%)

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
           F    +V  G  +H  ++K GF   +F+ N L+S Y  C  V  AR +FD     DV +W
Sbjct: 25  FCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASW 84

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
             + S Y ++   +E  +LF  M   G  P   T+   L +C+ L++ + G R    V +
Sbjct: 85  TMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTK 144

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                N +L +AL D Y+ CG    A  +F                 Y+N G        
Sbjct: 145 SGFDSNPVLGSALIDFYSKCGCTQEAYRVFE----------------YMNNG-------- 180

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                  D V WT M+  ++    + +AL L+  M  + + P+EFT V +L A + LG L
Sbjct: 181 -------DIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG-L 232

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
             G+ V  ++   +++ ++ +  AL+DMYCKC  +E A +V +  L  D F WTA+I G 
Sbjct: 233 NYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGF 292

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA---------DM 475
             +    +++  F +M  + ++P+  TY G+L+AC+    +D G++  +         D+
Sbjct: 293 TQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDV 352

Query: 476 TIQHGI----------------------EPNEAHYGCMVDLLGRAGHLNEALEVIKNMP- 512
           ++ + +                       PN   +  ++      G   E+++V   M  
Sbjct: 353 SVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQG 412

Query: 513 --MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV-LLCNIYAACNRWDN 569
             ++PNS     +LGAC   +           I++ + DN+ V    L + YA     D+
Sbjct: 413 VGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDD 472

Query: 570 FRELRQMILDRG-IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
              +  M+  R  I  T   + I   G  HE      +H    ++ +    + S L    
Sbjct: 473 AWHVTSMMKHRDVITYTSLATRINQTG-NHEMALNIITHMNKDDVRMDGFSLASFLSAAA 531

Query: 629 YMP 631
            +P
Sbjct: 532 GIP 534



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 143/338 (42%), Gaps = 12/338 (3%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P++ T  T ++    T +S+ Q +++H   IK     +  V N LV    +  G +  A 
Sbjct: 417 PNSFTLST-ILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVD-AYAGLGMVDDAW 474

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
            V   +    V  + ++    ++  +H+  + I   M K DVR D ++    L       
Sbjct: 475 HVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIP 534

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV-DMARGIFDVSYKDDVVTWNAMF 188
            +E GK+LHC+ +K G  S + V N L+  Y  CG + D  R   +++ + D V+WN + 
Sbjct: 535 IMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEIT-EPDAVSWNGLI 593

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK-I 247
            G             F +M   GV P  +T +LVL AC+    +D+G    + ++E   I
Sbjct: 594 FGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGI 653

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQV----DMAR 302
            P L     L D+    G +  A+ +   +  K D + +  ++      G +     MAR
Sbjct: 654 RPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMAR 713

Query: 303 QYFDQMPERD--YVLWTAMIDGYLRVNRFREALTLFRE 338
           Q  +  P     YVL   + D   R     +   + RE
Sbjct: 714 QGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRE 751



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 83/164 (50%), Gaps = 1/164 (0%)

Query: 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407
           E++++  + +  N  ++  G  + + I K   + D+F+ N L+ +Y KC  V +A+++F 
Sbjct: 15  EYSLLKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFD 74

Query: 408 EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
           EM  +D  +WT ++      G+ +++L++F  ML +   P+E T    L +C+     + 
Sbjct: 75  EMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNH 134

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           G  + A +T + G + N      ++D   + G   EA  V + M
Sbjct: 135 GTRFQALVT-KSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYM 177


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/621 (40%), Positives = 370/621 (59%), Gaps = 24/621 (3%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV--FVQNALISTYCLCGEVDMARGIFD- 174
           F  LL+  +R  A+  G++LH   +  G  SS   F++NAL+  Y  C     AR +FD 
Sbjct: 23  FRSLLRQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSHARKLFDE 82

Query: 175 --VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK-- 230
              S+KD V  + A+    +    F E+ KLF +M +  +    V +V  L+ACA+L   
Sbjct: 83  IPQSHKDSV-DYTALI---RHCPPF-ESLKLFIQMRQFDLPLDGVVMVCALNACARLGGG 137

Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
           D  VG + H  V +   V    + NAL ++Y   G +G A ++F  I+ + V+SW+  + 
Sbjct: 138 DTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLE 197

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEF 349
           G +    V+  R  FD+MPER+ V WT MI GY+     +EA  L +EM      R    
Sbjct: 198 GLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFV 257

Query: 350 TIVSILTACANLGALELGEWVKTY-IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
           T+ S+L+AC+  G + +G WV  Y + +  +   + VG +L+DMY KCG +  A  VFR 
Sbjct: 258 TLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRS 317

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           ML+++   W AM+ GLA++G G  ++DMF  M+   + PD VT++ +LSAC+H+G+V++G
Sbjct: 318 MLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVE-EVKPDGVTFMALLSACSHSGLVEKG 376

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
            +YF D+   + I+P   HY CMV LLGRAG L EA  ++KNM + PN +V G+L+G+C 
Sbjct: 377 WDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLIGSCY 436

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
            H   ++ E   + +LE+DP N   +++L N+YA   + +    LRQ++  RGIKK PG 
Sbjct: 437 AHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGM 496

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL-------DVG 641
           S I ++G +H+F+AGDKSH +T EIY+KLDEM   L+  GY+P+ S   L       D  
Sbjct: 497 SSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDCS 556

Query: 642 E--EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           E  E+ E+ ++ HSEKLA+ FGL+S+  G  + I KNLR+C DCH   K+ S VY RE++
Sbjct: 557 ESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNLRICQDCHSAIKIASKVYKREIV 616

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           VRD+ RFH FKHGSCSC DYW
Sbjct: 617 VRDRYRFHSFKHGSCSCSDYW 637



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDI 129
           +F ++P  +   W  MI GY      K   L+  +M+     R    T   +L   ++  
Sbjct: 211 LFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSG 270

Query: 130 AVEFGKELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            V  G+ +HC+ +K  G D  V V  +L+  Y  CG ++ A  +F    K +VV WNAM 
Sbjct: 271 DVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAML 330

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
            G            +F  M  + V P  VT + +LSAC+
Sbjct: 331 GGLAMHGMGKIAVDMFPSMVEE-VKPDGVTFMALLSACS 368


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/570 (41%), Positives = 350/570 (61%), Gaps = 11/570 (1%)

Query: 154 NALISTYCLC-GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
           N L++ Y    G +  AR +FD     DVV++N +   +      D  R+LF  M  + V
Sbjct: 52  NCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDV 111

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
              + T+V  LS    +++  V       V     V N +  NA+   +A  G+M  A E
Sbjct: 112 ASWN-TMVSGLSKSGAVEEAKV-------VFLAMPVRNSVSWNAMVSGFACSGDMSTAEE 163

Query: 273 IFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            F N   K D + WTA+V+GY++ G V  A +YF+ MP R+ V W A++ GY++ +   +
Sbjct: 164 WFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADD 223

Query: 332 ALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           AL LFR M + +N++P+  T+ S+L  C+NL AL  G+ +  +  K  +  ++ VG +L+
Sbjct: 224 ALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLV 283

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            MYCKCGD+  A  +F EM  +D   W AMI G A +G G +++++F +M    + P+ +
Sbjct: 284 SMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWI 343

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T+V VL+AC HTG+ D G + F  M   +GIEP   HY CMVDLL RAG L  A++ I++
Sbjct: 344 TFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRS 403

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MP +P+   +G LL ACRV+++ E AE+AA +++E DP +   YV L NIYA  N+WD+ 
Sbjct: 404 MPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDV 463

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
             +R+ + D  + KTPG S IE+ GV+HEF + D+ HPQ   I+ KL ++   +K +GY+
Sbjct: 464 SRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYV 523

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           PD+  V  DV E  K + + +HSEKLA+AFGLIS+  G+T+RI KNLR+C DCH  AK++
Sbjct: 524 PDLDFVLHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVI 583

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           SM+ DRE+I+RD TRFHHF+ G CSC DYW
Sbjct: 584 SMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 166/366 (45%), Gaps = 40/366 (10%)

Query: 46  TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLD 105
           T   V    +  C    GD   A ++F  +P   V  WNTM+ G S+  + +   +++L 
Sbjct: 77  TPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLA 136

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           M    VR ++ ++  ++ GF     +   +E   +  +        +  A++S Y   G 
Sbjct: 137 M---PVR-NSVSWNAMVSGFACSGDMSTAEEWFRNAPE---KEDAVLWTAMVSGYMDIGN 189

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLS 224
           V  A   F+     ++V+WNA+ +GY +    D+  +LF  M R+  V P + T+  VL 
Sbjct: 190 VVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLL 249

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
            C+ L  L  GK+ H++  +  +  NL +  +L  MY  CG++  A  +FG +  +DV++
Sbjct: 250 GCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVA 309

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           W A+++GY   G                        DG       +EA+ LF  M+   +
Sbjct: 310 WNAMISGYAQHG------------------------DG-------KEAINLFERMKDEGV 338

Query: 345 RPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
            P+  T V +LTAC + G  + G +  +   +   ++  +   + ++D+ C+ G +E+A 
Sbjct: 339 EPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAV 398

Query: 404 RVFREM 409
              R M
Sbjct: 399 DFIRSM 404


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/599 (37%), Positives = 343/599 (57%), Gaps = 32/599 (5%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           L+    R  +++  + +H H+    F  SVF+ N+LI  YC CG V  AR +FD     D
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           + +W ++ +GY +    DE   L   M R    P   T   +L A        +G++ H 
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
              +     ++ + +AL DMYA CG M                               DM
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRM-------------------------------DM 218

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           A   FDQ+  ++ V W A+I G+ R       L +F EMQ +      FT  S+ +A A 
Sbjct: 219 AIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAG 278

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           +GALE G+WV  ++ K+  +   FVGN ++DMY K G +  A++VF  + +KD  TW +M
Sbjct: 279 IGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSM 338

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           +   A  G G +++  F +M +  +  +++T++ +L+AC+H G+V EG++YF DM  ++ 
Sbjct: 339 LTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-DMMKEYN 397

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           +EP   HY  +VDLLGRAG LN+AL  I  MPMKP + VWGALLG+CR+H++A++ + AA
Sbjct: 398 LEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAA 457

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
             + ELDPD+    VLL NIYA+  +WD    +R+M+   G+KK P CS +E+   VH F
Sbjct: 458 DHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMF 517

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
           VA D +HP+++EIY K +E++  ++  GY+P+   V L V E++++  +  HSEK+A+AF
Sbjct: 518 VANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAF 577

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
            LI+   G TIRI+KN+R+C DCH   + +S V+ RE++VRD  RFHHF  GSCSC DY
Sbjct: 578 ALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 189/409 (46%), Gaps = 43/409 (10%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           LI+      S+   + IH+         +  + N L+   C + G +  A +VF  +P  
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYC-KCGAVADARRVFDGMPAR 128

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            +C W ++I GY++ D     + +   ML+   +P+ +TF  LLK      +   G+++H
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
              +K+ +   V+V +AL+  Y  CG +DMA  +FD     + V+WNA+ +G+ R    +
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 248

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
            T  +F EM+R G   T  T   V SA A +  L+ GK  H ++ +     +  + N + 
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA  G M  A ++F  +  KDV++W +++T +   G                      
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLG-------------------- 348

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
                      REA+T F EM+   +  ++ T +SILTAC++ G ++ G   K Y D  K
Sbjct: 349 -----------REAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEG---KQYFDMMK 394

Query: 379 VKN-----DIFVGNALIDMYCKCGDVEKAQR-VFREMLRKDKFTWTAMI 421
             N     D +V   ++D+  + G +  A   +F+  ++     W A++
Sbjct: 395 EYNLEPEIDHYV--TVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 441



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 92/182 (50%), Gaps = 2/182 (1%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           S++TACA   +L+    +  ++  ++    +F+ N+LI +YCKCG V  A+RVF  M  +
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D  +WT++I G A N   D++L +   MLR    P+  T+  +L A   +     G +  
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
           A +T+++    +      ++D+  R G ++ A+ V   +  K N + W AL+       D
Sbjct: 189 A-LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAGFARKGD 246

Query: 533 AE 534
            E
Sbjct: 247 GE 248


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/631 (37%), Positives = 374/631 (59%), Gaps = 9/631 (1%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKY 67
           P   L    P +  +E C S  Q KQI    ++  L+      ++L+ F   S   +++ 
Sbjct: 24  PTVDLKLNHPSLILLEKCNSRTQFKQILGHMMRNNLVGQTFPMSRLLFFSAVSHPENLEL 83

Query: 68  ACKVFRKI-PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           A  +F    P P++ ++NTMI G+    S++    IY  ML++   PD  TF +LL+  T
Sbjct: 84  AILLFNHFTPYPNLYIFNTMILGFPF--SNEKAFTIYRSMLQNGTYPDRQTFLYLLQ--T 139

Query: 127 RDIAVEFGKELHCHVLKFGFDS-SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
                E  K++HCH L FG  S   +++N+LI  Y   G  + AR +FD     +VV++N
Sbjct: 140 TKFVAEV-KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYN 198

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
            M  G+ +V       +LF +M   G+ P   T++ +L  C +L +  +GK  H  +++ 
Sbjct: 199 TMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKS 258

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
               NLIL NAL DMY  C E+  A ++F     KD +SW  I+ GY   G++++A   F
Sbjct: 259 IGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLF 318

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
           +Q+P RD V W ++I GY +   +     LF  M   N++PD+ TIV++++A A +GAL+
Sbjct: 319 NQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALD 378

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            G W+     K   K + F G+ALIDMYCKCG +E+A  +F ++  KD  TWT MI G A
Sbjct: 379 QGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFA 438

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            +G G+K+L++FS M +A   P++VT+V VL+AC+H+G+VDEG + F+ M  ++ IEP  
Sbjct: 439 FHGFGNKALELFSVM-QAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGV 497

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HYGC+VDLL R+G L +A+ VI+ MPM+P+  +WGA+L ACR+HR+ E+AE A  ++L+
Sbjct: 498 EHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLK 557

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           L+P+ E  Y+LL N+YA C RW     +R+++  RG+KK  GCS + ++G+VH+F A +K
Sbjct: 558 LEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNK 617

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
            HP+  +I   L  +T++++    +P  S +
Sbjct: 618 QHPRWMDICSILSFLTNEMRLEADVPSKSHL 648


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/594 (39%), Positives = 349/594 (58%), Gaps = 34/594 (5%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC--GEVDMARGIFDVSYKDDVVTWNAM 187
           ++E  K++H H+LK G     F  + L+++  L   G ++ A  IF    +     +N M
Sbjct: 43  SMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTM 102

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
             G       +E   L+ EM  +G+ P + T   VL AC+ L  L  G + H +V +  +
Sbjct: 103 IRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGL 162

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             ++ ++N L  MY  CG    A+E  G +                           F+Q
Sbjct: 163 EVDVFVQNGLISMYGKCG----AIEHAGVV---------------------------FEQ 191

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGALEL 366
           M E+    W+++I  +  V  + E L L  +M      R +E  +VS L+AC +LG+  L
Sbjct: 192 MDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNL 251

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G  +   + +N  + ++ V  +LIDMY KCG +EK   VF+ M  K+++++T MI GLAI
Sbjct: 252 GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAI 311

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G G +++ +FS ML   + PD+V YVGVLSAC+H G+V+EG + F  M  +H I+P   
Sbjct: 312 HGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQ 371

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HYGCMVDL+GRAG L EA ++IK+MP+KPN +VW +LL AC+VH + E+ E+AA+ I  L
Sbjct: 372 HYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRL 431

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           +  N   Y++L N+YA   +W N   +R  + ++ + +TPG S++E N  V++FV+ DKS
Sbjct: 432 NKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKS 491

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
            P  + IY  + +M   LKF GY PD+S+V LDV E++K + +  HS+KLA+AF LI + 
Sbjct: 492 QPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTS 551

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            G  IRI +NLRMC DCH   K +S++Y+RE+ VRD+ RFHHFK G+CSCKDYW
Sbjct: 552 EGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 212/423 (50%), Gaps = 40/423 (9%)

Query: 8   SPPSTLT-----QETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SE 61
           SPP +        E   +S ++ C+SM + KQ+H+  +KLGL  +    + LV  C  S 
Sbjct: 18  SPPQSSELNAKFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSR 77

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
            G M+YAC +F +I  P    +NTMI+G       +  +L+Y++ML+  + PDN+T+PF+
Sbjct: 78  WGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFV 137

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           LK  +  +A++ G ++H HV K G +  VFVQN LIS Y  CG ++ A  +F+   +  V
Sbjct: 138 LKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSV 197

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKRAHR 240
            +W+++   +  V+ + E   L G+M  +G      +I++  LSAC  L   ++G+  H 
Sbjct: 198 ASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHG 257

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
            +       N++++ +L DMY  CG +   L +F N+ +K+  S+T ++ G    G    
Sbjct: 258 ILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHG---- 313

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
                                      R REA+ +F +M    + PD+   V +L+AC++
Sbjct: 314 ---------------------------RGREAVRVFSDMLEEGLTPDDVVYVGVLSACSH 346

Query: 361 LGALELGEWVKTYID-KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWT 418
            G +  G      +  ++ +K  I     ++D+  + G +++A  + + M ++ +   W 
Sbjct: 347 AGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWR 406

Query: 419 AMI 421
           +++
Sbjct: 407 SLL 409


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/616 (36%), Positives = 354/616 (57%), Gaps = 32/616 (5%)

Query: 105 DMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCG 164
           D+  S +  D   +  LLK  T    +  G+ +H H+L+  F   + + N L++ Y  CG
Sbjct: 50  DLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG 109

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
            ++ AR +F+   + D VTW  + SGY +  +  +    F +M R G  P   T+  V+ 
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIK 169

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           A A  +    G + H +  +C    N+ + +AL D+Y   G M                 
Sbjct: 170 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM----------------- 212

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                         D A+  FD +  R+ V W A+I G+ R +   +AL LF+ M     
Sbjct: 213 --------------DDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGF 258

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           RP  F+  S+  AC++ G LE G+WV  Y+ K+  K   F GN L+DMY K G +  A++
Sbjct: 259 RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARK 318

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           +F  + ++D  +W +++   A +G G +++  F +M R  I P+E++++ VL+AC+H+G+
Sbjct: 319 IFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGL 378

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           +DEG  Y+ ++  + GI P   HY  +VDLLGRAG LN AL  I+ MP++P + +W ALL
Sbjct: 379 LDEGWHYY-ELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437

Query: 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
            ACR+H++ E+   AA+ + ELDPD+   +V+L NIYA+  RW++   +R+ + + G+KK
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497

Query: 585 TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED 644
            P CS +E+   +H FVA D+ HPQ +EI  K +E+ + +K +GY+PD S V + V +++
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 557

Query: 645 KERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKT 704
           +E  +  HSEK+A+AF L+++ PG TI I KN+R+C DCH   KL S V  RE+IVRD  
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617

Query: 705 RFHHFKHGSCSCKDYW 720
           RFHHFK G+CSCKDYW
Sbjct: 618 RFHHFKDGNCSCKDYW 633



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 182/388 (46%), Gaps = 34/388 (8%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A KVF K+P+     W T+I GYS+ D   + +L +  ML+    P+ +T   ++
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K    +     G +LH   +K GFDS+V V +AL+  Y   G +D A+ +FD     + V
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 228

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNA+ +G+ R    ++  +LF  M R G  P+  +   +  AC+    L+ GK  H Y+
Sbjct: 229 SWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYM 288

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +          N L DMYA  G +  A +IF  +  +DV+SW +++T Y   G      
Sbjct: 289 IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHG------ 342

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
             F                        +EA+  F EM+   IRP+E + +S+LTAC++ G
Sbjct: 343 --FG-----------------------KEAVWWFEEMRRVGIRPNEISFLSVLTACSHSG 377

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            L+ G      + K+ +  + +    ++D+  + GD+ +A R   EM +      W A++
Sbjct: 378 LLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDE 449
              A   H +  L  ++      + PD+
Sbjct: 438 N--ACRMHKNTELGAYAAEHVFELDPDD 463



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 102/272 (37%), Gaps = 55/272 (20%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
           + Q K +H+  IK G        N L+    ++ G +  A K+F ++ +  V  WN+++ 
Sbjct: 278 LEQGKWVHAYMIKSGEKLVAFAGNTLLDMY-AKSGSIHDARKIFDRLAKRDVVSWNSLLT 336

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
            Y++    K  V  + +M +  +RP+  +F  +L   +                      
Sbjct: 337 AYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHS-------------------- 376

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV--TWN--AMFSGYKRVKQFDETRKLF 204
                          G +D     +++  KD +V   W+   +     R    +   +  
Sbjct: 377 ---------------GLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC---KIVPNLILENALTDMY 261
            EM    + PT+     +L+AC   K+ ++G  A  +V E       P++IL N    +Y
Sbjct: 422 EEMP---IEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYN----IY 474

Query: 262 AACGEMGFALEIF-----GNIKNKDVISWTAI 288
           A+ G    A  +        +K +   SW  I
Sbjct: 475 ASGGRWNDAARVRKKMKESGVKKEPACSWVEI 506


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/688 (34%), Positives = 379/688 (55%), Gaps = 33/688 (4%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           +I    ++ G   +  V + +V F   ++G +  A KVF  +P   V  WN++I GY + 
Sbjct: 166 EIIRAAVRRGFHLHLYVGSSMVNFLV-KRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQK 224

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
                 + ++L+M+   +RP   T   LLK   +    + G   H +VL  G  + VFV 
Sbjct: 225 GLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVL 284

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
            +L+  Y   G+   A  +FD      +++WNAM SGY +     E+  LF  + + G  
Sbjct: 285 TSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSG 344

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
             S T+V ++  C++  DL+ G+  H  +   ++  +L+L  A+ DMY+ CG        
Sbjct: 345 FDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGA------- 397

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
              IK   ++                     F +M +++ + WTAM+ G  +     +AL
Sbjct: 398 ---IKQATIV---------------------FGRMGKKNVITWTAMLVGLSQNGYAEDAL 433

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LF +MQ   +  +  T+VS++  CA+LG+L  G  V  +  ++    D  + +ALIDMY
Sbjct: 434 KLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMY 493

Query: 394 CKCGDVEKAQRVFR-EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
            KCG +  A+++F  E   KD     +MI+G  ++GHG  +L ++S+M+   + P++ T+
Sbjct: 494 AKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTF 553

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           V +L+AC+H+G+V+EG+  F  M   H + P   HY C+VDL  RAG L EA E++K MP
Sbjct: 554 VSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMP 613

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
            +P++ V  ALL  CR H++  M    A +++ LD  N  +YV+L NIYA   +W++   
Sbjct: 614 FQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNY 673

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R ++  +G+KK PG S+IE+   V+ F A D SHP   +IY  L+ +  +++  GY+PD
Sbjct: 674 IRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPD 733

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            S V  DV E  K + ++ HSE+LA+AFGL+S+  G  I+I KNLR+CVDCH + K +S 
Sbjct: 734 TSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISK 793

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  RE+IVRD  RFHHF +G CSC D+W
Sbjct: 794 IVQREIIVRDANRFHHFVNGKCSCNDFW 821


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/591 (36%), Positives = 353/591 (59%), Gaps = 5/591 (0%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEV---DMARGIFDVSYKDDVVTWNAMFSGY 191
           K+ H  +L  G  +   + + L++   +       D A  I++      V   N M   +
Sbjct: 48  KQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIRCF 107

Query: 192 KRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
            +      +  L+  M R  V  P   T+  VL AC+    +  G +   +V +   V +
Sbjct: 108 VKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKD 167

Query: 251 LILENALTDMYAACGEMGFALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           + + NAL  +Y  C  +  A ++F  +  ++DV+SW +++ G++  GQ+ +A++ F +MP
Sbjct: 168 VFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMP 227

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           E+D + W  +I G ++     +AL  F+E+    +RP+E  +VS+L A A LG LE G+ 
Sbjct: 228 EKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKR 287

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           + +  +  +      +G AL+DMY KCG +++++ +F  M  KDK++W  MI GLA +G 
Sbjct: 288 IHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGL 347

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
           G ++L +F + L     P  VT++GVL+AC+  G+V EG+ +F  MT  +GIEP   HYG
Sbjct: 348 GQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYG 407

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           CMVDLL RAG + +A+E+I  MP  P+ ++W ++LG+C+VH   E+ E    +++++DP 
Sbjct: 408 CMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPT 467

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           +   YV L  I+A   +W++  ++R+++ +R   K  G S+IE  G VH FVAGDK H +
Sbjct: 468 HNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHER 527

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
           T EIY  L+ M   +   GY  ++S V  D+ EE+KE A+ +HSE+LA+AFGL+ +  G 
Sbjct: 528 TTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTKDGD 587

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            IRI+KNLR+C DCH ++K++S+V++RE+IVRD +RFHHFK G CSC+DYW
Sbjct: 588 CIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 135/540 (25%), Positives = 224/540 (41%), Gaps = 107/540 (19%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK--YACKVFRKIPRPSVCLWNTMIK 88
           Q+KQ H++ + LGL  +  + + L+ F       +   YA  ++  I  P+V   N MI+
Sbjct: 46  QIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIR 105

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVR-PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
            + + D  ++ + +Y  M +S V  P+ +T  F+L+  +   A+  G ++  HV+K GF 
Sbjct: 106 CFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFV 165

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
             VFV+NALI  YC C  V+ A+ +FD V    DVV+WN+M  G+ R+ Q    +KLF E
Sbjct: 166 KDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVE 225

Query: 207 MERKGVL-------------------------------PTSVTIVLVLSACAKLKDLDVG 235
           M  K V+                               P    +V +L+A A+L  L+ G
Sbjct: 226 MPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYG 285

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           KR H      +      L  AL DMYA CG +  +  +F  +  KD  SW  ++ G    
Sbjct: 286 KRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATH 345

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G                                 +EAL LF +  T    P   T + +L
Sbjct: 346 GLG-------------------------------QEALALFEKFLTQGFHPVNVTFIGVL 374

Query: 356 TACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           TAC+  G +  G+ + K   D   ++ ++     ++D+  + G V  A            
Sbjct: 375 TACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDA------------ 422

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
                              ++M ++M      PD V +  VL +C   G ++ G E   +
Sbjct: 423 -------------------VEMINRM---PAPPDPVLWASVLGSCQVHGFIELGEE-IGN 459

Query: 475 MTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV--WGALLGACRVHR 531
             IQ  ++P +  HY  +  +  R     +  +V + M  + ++ +  W  +    RVHR
Sbjct: 460 KLIQ--MDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHR 517


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/699 (34%), Positives = 385/699 (55%), Gaps = 44/699 (6%)

Query: 15  QETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA--CKVF 72
           Q T L     T  S+ Q +Q H+  +K GL  +  +  KL++   +   +M +A    V 
Sbjct: 15  QHTILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYAN---NMCFADATLVL 71

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             +P P+V  ++T+I  +S+     + +  +  ML   + PDN   P  +K      A++
Sbjct: 72  DLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALK 131

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
             +++H      GFDS  FVQ++L+  Y  C ++  A  +FD  ++ DVV+W+A+ + Y 
Sbjct: 132 PARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYA 191

Query: 193 RVKQFDETRKLFGEMERKGVLPTSV----------------------------------- 217
           R    DE ++LF EM   GV P  +                                   
Sbjct: 192 RQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGT 251

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           TI  VL A   L+DL +G   H YV +  +V +  + +AL DMY  C       ++F  +
Sbjct: 252 TISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQM 311

Query: 278 KNKDVISWTAIVTGYINRGQVDMA----RQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
            + DV S  A + G    GQV+ +    RQ  DQ  E + V WT+MI    +  R  EAL
Sbjct: 312 DHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEAL 371

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LFREMQ + ++P+  TI  +L AC N+ AL  G+    +  +  +  D++VG+ALIDMY
Sbjct: 372 ELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMY 431

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KCG ++ ++  F  +  K+   W A+I G A++G   +++++F  M R+   PD +++ 
Sbjct: 432 AKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFT 491

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            VLSAC+ +G+ +EG  YF  M+ ++GIE    HY CMV LL RAG L +A  +I+ MP+
Sbjct: 492 CVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPV 551

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
            P++ VWGALL +CRVH +  + E+AA+++ EL+P N   Y+LL NIYA+   W+    +
Sbjct: 552 NPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRV 611

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R M+ ++G++K PGCS IE+   VH  +AGDKSHPQ  +I   LD+++ ++K +GY P+I
Sbjct: 612 RDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKLGYFPEI 671

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           + V  DV E+DKE+ +  HSEKLA+ FGL+++ PG  ++
Sbjct: 672 NFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQ 710


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/709 (34%), Positives = 379/709 (53%), Gaps = 63/709 (8%)

Query: 37  SQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSH 96
           SQ +   LL NP   N +V  C  ++    +A  V      P    W  +IK Y+     
Sbjct: 4   SQNVMRSLLRNP---NTVVPTCHVKQ---LHAQIVKTTKATPHSLAWICIIKCYASHGLL 57

Query: 97  KNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA 155
           ++  L   ++L+S  + PD + FP LL+  T        + LH  V++ GF   ++  NA
Sbjct: 58  RHS-LASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANA 116

Query: 156 LISTYC----------------------LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           L++ Y                          ++D  R +FD     DVV+WN + +G  +
Sbjct: 117 LMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQ 176

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
              ++E   +  EM ++ + P S T+  +L    +  ++  GK  H Y        ++ +
Sbjct: 177 NGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFI 236

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            ++L DMYA C ++  ++  F  + N+D ISW +I+ G +  G                 
Sbjct: 237 GSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNG----------------- 279

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
                         RF + L  FR M    ++P + +  S++ ACA+L AL LG+ +  Y
Sbjct: 280 --------------RFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAY 325

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR--EMLRKDKFTWTAMIVGLAINGHGD 431
           I +    ++ F+ ++L+DMY KCG+++ A+ +F   EM  +D  +WTA+I+G A++GH  
Sbjct: 326 IIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHAL 385

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
            ++ +F +ML   + P  V ++ VL+AC+H G+VDEG +YF  M    G+ P   HY  +
Sbjct: 386 DAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAV 445

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
            DLLGRAG L EA + I NM  +P   VW  LL ACR H++ E+AE    +IL +DP N 
Sbjct: 446 ADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNM 505

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             +V++ NIY+A  RW +  +LR  +   G+KKTP CS IE+   VH F+AGDKSHP   
Sbjct: 506 GAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYD 565

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           +I   L+ +   ++  GY+ D +EV  DV EE K   +  HSE+LA+AFG+IS+  G TI
Sbjct: 566 KINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTI 625

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R++KN+R+CVDCH   K ++ +  RE+IVRD +RFHHFK+GSCSC DYW
Sbjct: 626 RVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/750 (34%), Positives = 394/750 (52%), Gaps = 48/750 (6%)

Query: 2    FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
            FS SS   P    Q   L        S   L  +H+  +K G L      N L+T   ++
Sbjct: 279  FSISSYFYPPLWLQSCSLYH-FTLSNSPPPLGTLHALYVKNGSLQTLNPANHLLTLY-AK 336

Query: 62   KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
              +M +A K+F +IP+ +   W  +I G++R  S +    ++ +M      P+ YT   +
Sbjct: 337  SNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSV 396

Query: 122  LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
            LK  + D  ++ GK +H  +L+ G D  V + N+++  Y  C   + A  +F++  + DV
Sbjct: 397  LKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDV 456

Query: 182  VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP--------------------------- 214
            V+WN M   Y R    +++  +F  +  K V+                            
Sbjct: 457  VSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVEC 516

Query: 215  ----TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
                ++VT  + L   + L  +++G++ H  V +     +  + ++L +MY  CG M  A
Sbjct: 517  GTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKA 576

Query: 271  LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
              I  ++   DV+           +G    AR  + + P+   V W +M+ GY+   ++ 
Sbjct: 577  SIILRDVP-LDVL----------RKGN---ARVSYKE-PKAGIVSWGSMVSGYVWNGKYE 621

Query: 331  EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
            + L  FR M    +  D  T+ +I++ACAN G LE G  V  Y+ K   + D +VG++LI
Sbjct: 622  DGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLI 681

Query: 391  DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            DMY K G ++ A  VFR+    +   WT+MI G A++G G  ++ +F +ML   IIP+EV
Sbjct: 682  DMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEV 741

Query: 451  TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
            T++GVL+AC+H G+++EG  YF  M   + I P   H   MVDL GRAGHL +    I  
Sbjct: 742  TFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFK 801

Query: 511  MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
              +   + VW + L +CR+H++ EM +  ++ +L++ P +   YVLL N+ A+ +RWD  
Sbjct: 802  NGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEA 861

Query: 571  RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
              +R ++  RG+KK PG S I++   +H FV GD+SHPQ  EIY  LD +   LK +GY 
Sbjct: 862  ARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYS 921

Query: 631  PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
             D+  V  DV EE  E  +  HSEKLA+ FG+I++     IRI+KNLR+C DCH   K  
Sbjct: 922  FDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYA 981

Query: 691  SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            S + DRE+IVRD  RFHHFKHGSCSC DYW
Sbjct: 982  SQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 386/706 (54%), Gaps = 36/706 (5%)

Query: 19  LISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           +++ I  C ++ +++    +H    KLG+    TV N LV    S+ G +  A  +F   
Sbjct: 302 MVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMY-SKCGYLGEARALFDMN 360

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFG 134
              +V  WNT+I GYS+    +    +  +M + + VR +  T   +L   + +  +   
Sbjct: 361 GGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSL 420

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           KE+H +  + GF     V NA ++ Y  C  +D A  +F       V +WNA+   + + 
Sbjct: 421 KEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQN 480

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
               ++  LF  M   G+ P   TI  +L ACA+LK L  GK  H +          +L 
Sbjct: 481 GFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGF----------MLR 530

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N            G  L+ F  I         ++++ YI    + + +  FD+M  +  V
Sbjct: 531 N------------GLELDEFIGI---------SLMSLYIQCSSMLLGKLIFDKMENKSLV 569

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W  MI G+ +     EAL  FR+M +  I+P E  +  +L AC+ + AL LG+ V ++ 
Sbjct: 570 CWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFA 629

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K  +  D FV  ALIDMY KCG +E++Q +F  +  KD+  W  +I G  I+GHG K++
Sbjct: 630 LKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAI 689

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++F  M      PD  T++GVL AC H G+V EG +Y   M   +G++P   HY C+VD+
Sbjct: 690 ELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDM 749

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L EAL+++  MP +P+S +W +LL +CR + D E+ E  +K++LEL+P+    Y
Sbjct: 750 LGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENY 809

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL N+YA   +WD  R++RQ + + G+ K  GCS IE+ G+V+ F+  D S  ++K+I 
Sbjct: 810 VLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQ 869

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
               ++   +  +GY PD S V  ++ EE K + +  HSEKLA++FGL+++  G T+R+ 
Sbjct: 870 QTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVC 929

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+CVDCH   KLVS V  R++IVRD  RFHHFK+G C+C D+W
Sbjct: 930 KNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 162/597 (27%), Positives = 259/597 (43%), Gaps = 82/597 (13%)

Query: 27  ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
           +++H  +++H+       L N  V +  +    S  G    +  VF       + L+N +
Sbjct: 106 KNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNAL 165

Query: 87  IKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           + GYSR    ++ + ++L++L  +D+ PDN+T P + K       VE G+ +H   LK G
Sbjct: 166 LSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAG 225

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
             S  FV NALI+ Y  CG V+ A  +F+     ++V+WN++         F E   +F 
Sbjct: 226 GFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFK 285

Query: 206 EM---ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
            +   E +G++P   T+V V+ ACA + ++ +G   H    +  I   + + N+L DMY+
Sbjct: 286 RLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYS 345

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG +G A  +F     K+V+SW  I+ GY   G                          
Sbjct: 346 KCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGD------------------------- 380

Query: 323 YLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
                 FR    L +EMQ    +R +E T++++L AC+    L   + +  Y  ++    
Sbjct: 381 ------FRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLK 434

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
           D  V NA +  Y KC  ++ A+RVF  M  K   +W A+I   A NG   KSLD+F  M+
Sbjct: 435 DELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMM 494

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE--------AHYGCMVD 493
            + + PD  T   +L AC     +  G+E    M +++G+E +E         +  C   
Sbjct: 495 DSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFM-LRNGLELDEFIGISLMSLYIQCSSM 553

Query: 494 LLGR------------------AGHLN-----EALEVIKNM---PMKPNSIVWGALLGAC 527
           LLG+                   G        EAL+  + M    +KP  I    +LGAC
Sbjct: 554 LLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGAC 613

Query: 528 R----VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
                +    E+   A K  L  D     V   L ++YA C       E  Q I DR
Sbjct: 614 SQVSALRLGKEVHSFALKAHLSEDA---FVTCALIDMYAKC----GCMEQSQNIFDR 663



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 148/314 (47%), Gaps = 43/314 (13%)

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILENALTDMYAACGEMGFALEIFGN 276
            I ++L AC   K++ VG++ H  V    K+  +++L   +  MY+ACG           
Sbjct: 94  AIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACG----------- 142

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
                                   +R  FD   E+D  L+ A++ GY R   FR+A++LF
Sbjct: 143 --------------------SPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLF 182

Query: 337 REM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
            E+   +++ PD FT+  +  ACA +  +ELGE V     K    +D FVGNALI MY K
Sbjct: 183 LELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGK 242

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML---RASIIPDEVTY 452
           CG VE A +VF  M  ++  +W +++   + NG   +   +F ++L      ++PD  T 
Sbjct: 243 CGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATM 302

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI---- 508
           V V+ AC   G V  G      +  + GI         +VD+  + G+L EA  +     
Sbjct: 303 VTVIPACAAVGEVRMGMVVHG-LAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNG 361

Query: 509 -KNMPMKPNSIVWG 521
            KN+ +  N+I+WG
Sbjct: 362 GKNV-VSWNTIIWG 374


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/537 (41%), Positives = 329/537 (61%), Gaps = 2/537 (0%)

Query: 79  SVCLWNTMIKGY--SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           +V +WNTMI+    + + +    +L Y+  L++ +RP+ +TF +LLK       V+ G+E
Sbjct: 53  NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  V++ GF  S FV  AL+  Y  CG V   R +FD   +  +V W  +   Y  V  
Sbjct: 113 VHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTF 172

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            ++  +LF  M   G+ P  V I  V+SAC  L DL V K  H ++++  I  +  + + 
Sbjct: 173 PEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSST 232

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L   Y  CG + +A   F     K+++ W  ++   +    +++ +Q F  MP+RD V W
Sbjct: 233 LISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSW 292

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
            +MI G+ R+ +++EALT F EM+ S + P+  T++S L+ACA+ GAL+ G W+  Y+DK
Sbjct: 293 NSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDK 352

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           N +  D  + ++LIDMY KCGD++KA ++F E  R+D FTWT+++ GLA++G G+K+L  
Sbjct: 353 NDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHY 412

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           FS+M  A + PD+VT VGVLSAC H G++D+G  YF  M    G+ P   HYGCMVDLLG
Sbjct: 413 FSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLG 472

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R G L EA ++I  MPM+ N I+WGA L ACRVH + E+ E+AA+++L LDP +    V+
Sbjct: 473 RMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPWARVM 532

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           L N+YA   +WD    LR+ I  +G+KK+PGCS IE+NG VH F+ GD SHP   EI
Sbjct: 533 LSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYTEI 589



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 179/393 (45%), Gaps = 71/393 (18%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF--CCSEKGDMKYACKVFRKIP 76
           L+  + + + + + +++H+  ++ G   +  V   L+ F   C   G  +   +VF ++ 
Sbjct: 97  LLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGR---QVFDEMR 153

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--GFTRDIAVEFG 134
           +P + LW  +I+ Y  +   +  + ++  M +  + PD      ++   G   D+ V   
Sbjct: 154 QPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGV--A 211

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA------------------------- 169
           K +HC + K G +   FV + LISTY  CG +D A                         
Sbjct: 212 KAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEH 271

Query: 170 ------RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
                 + +F      DVV+WN+M  G+ R+ Q+ E    F EME  GV P ++T++  L
Sbjct: 272 NNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTL 331

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           SACA    LD G   H YV +  +  +  L+++L DMY+ CG++  A++IF     +D+ 
Sbjct: 332 SACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLF 391

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           +WT+IV G    G+ + A  YF +M E                               + 
Sbjct: 392 TWTSIVCGLAMHGRGEKALHYFSKMKE-------------------------------AQ 420

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           ++PD+ T+V +L+ACA+ G L+ G W    ++K
Sbjct: 421 VQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEK 453



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 7/277 (2%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           + LIS    C S+    +   +T     + N  V N ++     E  +++   ++F+ +P
Sbjct: 231 STLISTYGECGSLDYAYRFFQETP----MKNIVVWNTMIHQSV-EHNNLELGKQLFQSMP 285

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
              V  WN+MI G++RI  ++  +  + +M  S V P+  T    L       A++ G  
Sbjct: 286 DRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAW 345

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H +V K   +    + ++LI  Y  CG++D A  IF+ S + D+ TW ++  G     +
Sbjct: 346 IHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGR 405

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILEN 255
            ++    F +M+   V P  VT+V VLSACA    LD G    + +++   +VP +    
Sbjct: 406 GEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYG 465

Query: 256 ALTDMYAACGEMGFALE-IFGNIKNKDVISWTAIVTG 291
            + D+    G +  A + I G     + I W A ++ 
Sbjct: 466 CMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSA 502


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/569 (40%), Positives = 349/569 (61%), Gaps = 9/569 (1%)

Query: 60  SEKGDMKYACKVFRKI-PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           S   ++  A  +F    P P++ ++NT+I  +S +   ++   +Y  +L S   PD  T 
Sbjct: 11  SHPDNLDLAITLFNHFTPNPNLFIYNTLISAFSSLKKIES-FYLYNVLLSSGECPDKQTL 69

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
            +LL+       V   K++HC  +  G  S  ++QN LI  Y   G V +A  +F+    
Sbjct: 70  LYLLQAVNFISQV---KQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPS 126

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D+V++N M  GY +     E  +LF EM   G+ P   TI+ +L +C +L ++  GK  
Sbjct: 127 PDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAV 186

Query: 239 HRYVKECK--IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
           H +++  K  I  NLIL NAL DMY  C ++  AL  FG +K KD++SW  IV G    G
Sbjct: 187 HGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVG 246

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
           +++ AR +F QMP RD V W +++ GY     F     L  +M    + PD  T++S+++
Sbjct: 247 ELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVS 306

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           A    GAL+ G W   ++ + ++K D F+G+ALIDMYCKCG +E+A RVF+E+ +KD   
Sbjct: 307 AATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTV 366

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           WT MI GLA +G+G K+L++FS+M +  + PD+VT+V VLSAC+H+G+VD+G + F+ MT
Sbjct: 367 WTTMITGLAFHGYGSKALELFSEM-QEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMT 425

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
             +GIEP   HYGC+VDLL R+G L+EA ++I  MPMKP+  +WGA+L AC+   D E+A
Sbjct: 426 -DYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELA 484

Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           E+A++++L LDP+ E  Y LL NIYAA  RW   +++R+ +  RG+KKT GCS + ++GV
Sbjct: 485 EIASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGV 544

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625
           VH F++ DK HP   +I   L+ + +++K
Sbjct: 545 VHNFISADKCHPGWVDISSILNCLKNEMK 573



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 212/465 (45%), Gaps = 69/465 (14%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+  ++    + Q+KQIH Q I  GL +   +QN L+     E G ++ A +VF K+P P
Sbjct: 69  LLYLLQAVNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYL-ENGLVRLAHQVFEKMPSP 127

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            +  +N MI GY++       + ++ +M+   + PD +T   LL    +   V+FGK +H
Sbjct: 128 DIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVH 187

Query: 139 CHV--LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
             +   K    S++ + NAL+  Y  C +V++A   F    + D+V+WN + +G  +V +
Sbjct: 188 GWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGE 247

Query: 197 FDETRKLFGEME-------------------------------RKGVLPTSVTIVLVLSA 225
            ++ R  F +M                                 + V+P +VT++ ++SA
Sbjct: 248 LEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSA 307

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
             +   LD G+ AH +V   +I  +  L +AL DMY  CG +  A  +F  I  KDV  W
Sbjct: 308 ATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVW 367

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           T ++TG    G                                  +AL LF EMQ  ++ 
Sbjct: 368 TTMITGLAFHGYGS-------------------------------KALELFSEMQ-EDVS 395

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           PD+ T VS+L+AC++ G ++ G  V + +    ++  +     L+D+  + G + +A+ +
Sbjct: 396 PDDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDI 455

Query: 406 FREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
             +M ++  +  W AM+   A    GD  L   +     ++ P+E
Sbjct: 456 IDQMPMKPSRSIWGAMLN--ACQAQGDVELAEIASRELLNLDPEE 498


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/615 (37%), Positives = 352/615 (57%), Gaps = 36/615 (5%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           M +  V  D+ T+  L+K      AV  GK +H H+   G+    F+ N LI+ Y     
Sbjct: 276 MERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNL 335

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           ++ A+ +FD   + +VV+W  M S Y   +  D   +L   M R GV+P   T   VL A
Sbjct: 336 LEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRA 395

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           C +L DL   K+ H ++ +  +  ++ + +AL D+Y+  GE+  AL++            
Sbjct: 396 CERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKV------------ 440

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                              F +M   D V+W ++I  + + +   EAL L++ M+     
Sbjct: 441 -------------------FREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFP 481

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
            D+ T+ S+L AC +L  LELG   + ++   K   D+ + NAL+DMYCKCG +E A+ +
Sbjct: 482 ADQSTLTSVLRACTSLSLLELGR--QAHVHVLKFDQDLILNNALLDMYCKCGSLEDAKFI 539

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F  M +KD  +W+ MI GLA NG   ++L++F  M      P+ +T +GVL AC+H G+V
Sbjct: 540 FNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLV 599

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           +EG  YF  M   +GI+P   HYGCM+DLLGRA  L++ +++I  M  +P+ + W  LL 
Sbjct: 600 NEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLD 659

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           ACR  ++ ++A  AAK+IL+LDP +   YVLL NIYA   RW++  E+R+ +  RGI+K 
Sbjct: 660 ACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKE 719

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
           PGCS IE+N  +H F+ GDKSHPQ  EI  +L++    L   GY+PD + V  D+  E +
Sbjct: 720 PGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQR 779

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           E ++  HSEKLA+ FG++S     TIRI KNL++C DCH+ AKL++ +  R +++RD  R
Sbjct: 780 EDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIR 839

Query: 706 FHHFKHGSCSCKDYW 720
           +HHF+ G CSC DYW
Sbjct: 840 YHHFQDGVCSCGDYW 854



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 156/340 (45%), Gaps = 47/340 (13%)

Query: 33  KQIHSQTIKLG-----LLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           K++H      G      LTN  + N  V F   E+  +     +F K+P  +V  W TMI
Sbjct: 305 KRVHRHIFSNGYHPKTFLTNILI-NMYVKFNLLEEAQV-----LFDKMPERNVVSWTTMI 358

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
             YS    +   + +   M +  V P+ +TF  +L+   R   +   K+LH  ++K G +
Sbjct: 359 SAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLE 415

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           S VFV++ALI  Y   GE+  A  +F      D V WN++ + + +    DE   L+  M
Sbjct: 416 SDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSM 475

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
            R G      T+  VL AC  L  L++G++AH +V   K   +LIL NAL DMY  CG +
Sbjct: 476 RRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHV--LKFDQDLILNNALLDMYCKCGSL 533

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  IF  +  KDVISW+ ++ G        +A+  F                      
Sbjct: 534 EDAKFIFNRMAKKDVISWSTMIAG--------LAQNGFSM-------------------- 565

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
              EAL LF  M+    +P+  TI+ +L AC++ G +  G
Sbjct: 566 ---EALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEG 602



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 161/335 (48%), Gaps = 14/335 (4%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S +  CE ++ LKQ+HS  +K+GL ++  V++ L+    S+ G++  A KVFR++     
Sbjct: 391 SVLRACERLYDLKQLHSWIMKVGLESDVFVRSALID-VYSKMGELLEALKVFREMMTGDS 449

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            +WN++I  +++       + +Y  M +     D  T   +L+  T    +E G++ H H
Sbjct: 450 VVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVH 509

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           VLK  FD  + + NAL+  YC CG ++ A+ IF+   K DV++W+ M +G  +     E 
Sbjct: 510 VLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEA 567

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILENALTD 259
             LF  M+ +G  P  +TI+ VL AC+    ++ G    R +     I P       + D
Sbjct: 568 LNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLD 627

Query: 260 MYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD------ 312
           +     ++   +++   +    DV++W  ++     R  VD+A     ++ + D      
Sbjct: 628 LLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGA 687

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           YVL + +   Y    R+ +   + R M+   IR +
Sbjct: 688 YVLLSNI---YAISKRWNDVAEVRRTMKKRGIRKE 719



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 5/205 (2%)

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           A+ +   M+   +  D  T   ++  C   GA+  G+ V  +I  N      F+ N LI+
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY K   +E+AQ +F +M  ++  +WT MI   +     D+++ + + M R  ++P+  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +  VL AC     + +   +   +    G+E +      ++D+  + G L EAL+V + M
Sbjct: 389 FSSVLRACERLYDLKQLHSWIMKV----GLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 512 PMKPNSIVWGALLGACRVHRDAEMA 536
            M  +S+VW +++ A   H D + A
Sbjct: 445 -MTGDSVVWNSIIAAFAQHSDGDEA 468


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/614 (37%), Positives = 347/614 (56%), Gaps = 44/614 (7%)

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           P    +  LL+      A++ GK+LH  V   GF     +   L++ YC+C  +  AR +
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           FD   K ++  WN +  GY     ++   +L+ +M   G++P + T   VL ACA L  +
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
           + G+  H +V +     ++ +  AL DMYA C                            
Sbjct: 193 EHGREIHEHVVQTGWEKDVFVGAALIDMYAKC---------------------------- 224

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G V  AR+ FD++  RD VLW +M+  Y +       L+L  EM  + +RP E T+V
Sbjct: 225 ---GCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLV 281

Query: 353 SILTACANLGALELG------EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           + ++A A+  AL  G       W + +   +KVK       AL+DMY KCG V  A+ +F
Sbjct: 282 TAISASADNAALPQGRELHGLSWRQEFESHDKVKT------ALVDMYAKCGSVRVARNLF 335

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
             +  K   +W AMI G A++GH  ++LD+F +M R +  PD +T+VGVLSAC+H G+++
Sbjct: 336 ERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVAK-PDHITFVGVLSACSHGGLLE 394

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
           EG  +F  M   + I+P   HY CMVDLLG +G L+EA  +I  M + P+S VWGALL +
Sbjct: 395 EGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNS 454

Query: 527 CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTP 586
           C++H + E+ E+A ++++EL+PD+   YV+L NIYA   +W+   +LR+++ DR +KK+ 
Sbjct: 455 CKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSI 514

Query: 587 GCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKE 646
            CS IE+   VH F++GD SHP + EIY +L+ +   +K  GY P    VF DV +++K 
Sbjct: 515 ACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKA 574

Query: 647 RAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRF 706
             V  HSE+LA+AFGLIS+ PG  + I KNLR+C DCH   K +S + +RE+ VRD  R+
Sbjct: 575 NMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRY 634

Query: 707 HHFKHGSCSCKDYW 720
           HHFK G CSC DYW
Sbjct: 635 HHFKDGVCSCGDYW 648



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/428 (30%), Positives = 198/428 (46%), Gaps = 39/428 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQ+H+Q    G   +  +  KLV   C     +  A  +F +IP+ ++ LWN +I+GY+ 
Sbjct: 95  KQLHAQVCLAGFGFDTVIATKLVNLYCV-CDSLSSARLLFDRIPKHNIFLWNVLIRGYAW 153

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              ++  V +Y  M    + PDN+TFPF+LK      A+E G+E+H HV++ G++  VFV
Sbjct: 154 NGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFV 213

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             ALI  Y  CG V  AR +FD     D V WN+M + Y +    D    L  EM   G+
Sbjct: 214 GAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGL 273

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            PT  T+V  +SA A    L  G+  H      +   +  ++ AL DMYA CG +  A  
Sbjct: 274 RPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARN 333

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  +  K V+SW A++TGY   G                                  EA
Sbjct: 334 LFERLGVKRVVSWNAMITGYAMHGHAT-------------------------------EA 362

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV--KTYIDKNKVKNDIFVGNALI 390
           L LF EM     +PD  T V +L+AC++ G LE G W+  +T I   K+   +     ++
Sbjct: 363 LDLFEEMNRV-AKPDHITFVGVLSACSHGGLLEEG-WMFFETMIRDYKIDPTVQHYTCMV 420

Query: 391 DMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           D+    G +++A  +  +M +  D   W A++    I  H +  L   +      + PD+
Sbjct: 421 DLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKI--HANVELGEIALERLIELEPDD 478

Query: 450 VTYVGVLS 457
                +LS
Sbjct: 479 AGNYVILS 486


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/610 (38%), Positives = 354/610 (58%), Gaps = 54/610 (8%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+ +H H++K  +  SVF++  LI  Y  C  +  A  +FD   + +VV+W AM S Y +
Sbjct: 262 GQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQ 321

Query: 194 VKQFDETRKLFG---EMERKGVL------------------PTSVTIVLVLSACAKLKDL 232
                +   LF    ++   GV                   P   T   VL++C      
Sbjct: 322 RGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGF 381

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
            +G++ H  + +     ++ + ++L DMYA                 KD           
Sbjct: 382 ILGRQIHSLIIKLNYEDHVFVGSSLLDMYA-----------------KD----------- 413

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G++  AR  F+ +PERD V  TA+I GY ++    EAL LFR +Q   ++ +  T  
Sbjct: 414 ---GKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYT 470

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
            +LTA + L AL+LG+ V  ++ ++++ + + + N+LIDMY KCG++  ++R+F  M  +
Sbjct: 471 GVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYER 530

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDEGREY 471
              +W AM+VG + +G G + L +F+ M   + + PD VT + VLS C+H G+ D+G   
Sbjct: 531 TVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNI 590

Query: 472 FADMTI-QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           F DM+  +  +EP   HYGC+VDLLGR+G + EA E IK MP +P + +WG+LLGACRVH
Sbjct: 591 FNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 650

Query: 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590
            + ++ E A +Q+LE++P N   YV+L N+YA+  RW++   LR ++L + + K PG S 
Sbjct: 651 SNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSS 710

Query: 591 IEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVY 650
           IE++ V+H F A D+SHP+ +EI +K+ E+++  K VGY+PD+S V  DV EE KE+ + 
Sbjct: 711 IELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILL 770

Query: 651 QHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFK 710
            HSEKLA++FGLI+S   V IR++KNLR+CVDCH  AK +S VY REV +RDK RFH   
Sbjct: 771 GHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIV 830

Query: 711 HGSCSCKDYW 720
            G CSC+DYW
Sbjct: 831 GGKCSCEDYW 840



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 197/417 (47%), Gaps = 64/417 (15%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           +++H+  IK   L +  ++ +L+     C   GD   A  VF ++P  +V  W  MI  Y
Sbjct: 263 QRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGD---AHNVFDEMPERNVVSWTAMISAY 319

Query: 91  SRIDSHKNGVLIY-------------LDMLKSD--------VRPDNYTFPFLLKGFTRDI 129
           S+       + ++             +D LK            P+ +TF  +L   T  +
Sbjct: 320 SQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSL 379

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
               G+++H  ++K  ++  VFV ++L+  Y   G++  AR +F+   + DVV+  A+ S
Sbjct: 380 GFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIIS 439

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY ++   +E  +LF  ++ +G+    VT   VL+A + L  LD+GK+ H +V   +I  
Sbjct: 440 GYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPS 499

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
            ++L+N+L DMY+ CG + ++  IF  +  + VISW A++ GY   G+            
Sbjct: 500 FVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEG----------- 548

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGE 368
                               RE L LF  M + + ++PD  TI+++L+ C++ G  + G 
Sbjct: 549 --------------------REVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGL 588

Query: 369 WVKTYIDKNKVKNDIFVGN--ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
            +   +   K++ +  + +   ++D+  + G VE+A     E ++K  F  TA I G
Sbjct: 589 NIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEA----FEFIKKMPFEPTAAIWG 641



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 149/308 (48%), Gaps = 22/308 (7%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L+ C   +    G+R H ++ + + +P++ L   L  +Y  C  +G A  +F  +  ++
Sbjct: 249 ILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERN 308

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V+SWTA+++ Y  RG    A   F       +      + G   +++ +        +  
Sbjct: 309 VVSWTAMISAYSQRGYASQALNLF-------FADVKISLTGVYAIDKLK--------LSN 353

Query: 342 SN-----IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            N       P+EFT  ++LT+C +     LG  + + I K   ++ +FVG++L+DMY K 
Sbjct: 354 PNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKD 413

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G + +A+ VF  +  +D  + TA+I G A  G  +++L++F ++    +  + VTY GVL
Sbjct: 414 GKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVL 473

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           +A +    +D G++   +  ++  I         ++D+  + G+L  +  +   M  +  
Sbjct: 474 TALSGLAALDLGKQ-VHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTM-YERT 531

Query: 517 SIVWGALL 524
            I W A+L
Sbjct: 532 VISWNAML 539



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 22/207 (10%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           +IL  C N  A   G+ V  ++ K +    +F+   LI +Y KC  +  A  VF EM  +
Sbjct: 248 AILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPER 307

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII---------------------PDEVT 451
           +  +WTAMI   +  G+  ++L++F   ++ S+                      P+E T
Sbjct: 308 NVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFT 367

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +  VL++CT +     GR+  + + I+   E +      ++D+  + G ++EA  V + +
Sbjct: 368 FATVLTSCTSSLGFILGRQIHS-LIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECL 426

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEM 538
           P +        + G  ++  D E  E+
Sbjct: 427 PERDVVSCTAIISGYAQLGLDEEALEL 453


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/710 (33%), Positives = 400/710 (56%), Gaps = 45/710 (6%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            +S ++ CE    +K    IH+  +K    T+  V N L+    +  G M+ A +VF+ +
Sbjct: 254 FVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMY-ANCGQMEDAERVFKSM 312

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  WNT++ G  + D + + +  + DM  S  +PD  +   ++    R   +  G 
Sbjct: 313 LFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGM 372

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR-- 193
           E+H + +K G DS++ + N+LI  Y  C  V      F+   + D+++W  + +GY +  
Sbjct: 373 EVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNE 432

Query: 194 --VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
             +   +  RK+  ++E+  V P  +  +L+  AC+ LK   + K  H YV +  +  ++
Sbjct: 433 CHLDALNLLRKV--QLEKMDVDPMMIGSILL--ACSGLKSEKLIKEIHGYVLKGGLA-DI 487

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
           +++NA+ ++Y   GE+                              VD AR  F+ +  +
Sbjct: 488 LIQNAIVNVY---GELAL----------------------------VDYARHVFESINSK 516

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D V WT+MI   +      EAL LF  +  +NI PD  T+VS+L A A L +L+ G+ + 
Sbjct: 517 DIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIH 576

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            ++ +     +  + N+L+DMY +CG +E A+ +F  + ++D   WT+MI    ++G G 
Sbjct: 577 GFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGK 636

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
            ++D+FS+M   +++PD +T++ +L AC+H+G+V EG+++F  M  ++ +EP   HY C+
Sbjct: 637 DAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACL 696

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLL R+  L EA   ++NMP++P++ VW ALLGACR+H + ++ E+AAK++L+L+ +N 
Sbjct: 697 VDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENS 756

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVL+ N +AA  RW++  E+R ++    +KK PGCS IE+   +H F+A DKSHPQ  
Sbjct: 757 GNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCN 816

Query: 612 EIYLKLDEMTSDLKFV-GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
            IYLKL + T  LK   GY      VF DV EE+K + +Y HSE+LA+ +GL+ +  G  
Sbjct: 817 NIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVTSKGTC 876

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +RI KNLR+C DCH   K+ S +  R ++VRD +RFHHF+ G CSC D+W
Sbjct: 877 LRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 145/557 (26%), Positives = 249/557 (44%), Gaps = 62/557 (11%)

Query: 23  IETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           +E C S   + Q +Q+H+  +K     +    +        + G    A KVF K+   +
Sbjct: 53  LELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERT 112

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           +  WN MI        +   + +Y +M    V  D +TFP +LK          G E+H 
Sbjct: 113 IFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHG 172

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY--KDDVVTWNAMFSGYKRVKQF 197
             +K G+   VFV NALI+ Y  CG++  AR +FD     KDD V+WN++ S +    + 
Sbjct: 173 VAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGES 232

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
            E   LF  M+  GV   + T V  L AC     + +G+  H  + +     ++ + NAL
Sbjct: 233 LEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNAL 292

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
             MYA CG+M  A  +F ++  KD +SW  +++G +   Q DM                 
Sbjct: 293 IAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMV---QNDM----------------- 332

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                      + +A+  F++MQ S  +PD+ ++++++ A      L  G  V  Y  K+
Sbjct: 333 -----------YSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKH 381

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            + +++ +GN+LIDMY KC  V+     F  M  KD  +WT +I G A N     +L++ 
Sbjct: 382 GIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLL 441

Query: 438 SQMLRASIIPDEVTYVGVLSACT---HTGMVDEGREY-----FADMTIQHGIEPNEAHYG 489
            ++    +  D +    +L AC+      ++ E   Y      AD+ IQ+ I        
Sbjct: 442 RKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQNAI-------- 493

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL---EL 546
             V++ G    ++ A  V +++  K + + W +++  C VH    +  +     L    +
Sbjct: 494 --VNVYGELALVDYARHVFESINSK-DIVSWTSMITCC-VHNGLAIEALELFNSLIETNI 549

Query: 547 DPDNEAVYVLLCNIYAA 563
           +PD   +  L+  +YAA
Sbjct: 550 EPD---LITLVSVLYAA 563



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 192/428 (44%), Gaps = 44/428 (10%)

Query: 109 SDVRPDNYTFPFLLKGFTRDI-------AVEFGKELHCHVLKF-GFDSSVFVQNALISTY 160
           +D  P    FP L + +++ +       A+  G++LH H LK   +  SVF+    +  Y
Sbjct: 34  TDPLPTTTRFP-LQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMY 92

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
             CG    A  +FD   +  + TWNAM        ++ E  +L+ EM   GV   + T  
Sbjct: 93  GKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFP 152

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            VL AC   K+  +G   H    +C     + + NAL  MYA CG++G            
Sbjct: 153 CVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLG------------ 200

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQ--MPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
                               AR  FD   M + D V W ++I  ++      EAL+LFR 
Sbjct: 201 -------------------GARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRR 241

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           MQ   +  + +T VS L AC     +++G  +   I K+    D++V NALI MY  CG 
Sbjct: 242 MQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQ 301

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           +E A+RVF+ ML KD  +W  ++ G+  N     +++ F  M  +   PD+V+ + +++A
Sbjct: 302 MEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAA 361

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
              +  +  G E  A   I+HGI+ N      ++D+ G+   +       + MP K + I
Sbjct: 362 SGRSANLLAGMEVHA-YAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEK-DLI 419

Query: 519 VWGALLGA 526
            W  ++  
Sbjct: 420 SWTTIIAG 427


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/587 (37%), Positives = 354/587 (60%), Gaps = 32/587 (5%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+++H  ++   +  +VF+   L++ Y  CG +D AR + D   +  VV+W  M SGY +
Sbjct: 61  GRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQ 120

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
            ++  E   LF +M R G +P   T+  VL++C+  + +  GK+ H  + +     ++ +
Sbjct: 121 TERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFV 180

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            ++L DMYA               K++++                  AR+ FD +PERD 
Sbjct: 181 GSSLLDMYA---------------KSENI----------------QEARRVFDTLPERDV 209

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           V  TA+I GY +     EAL LFR++ +  ++ +  T  +++TA + L +L+ G+ V   
Sbjct: 210 VSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHAL 269

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           I + ++   + + N+LIDMY KCG +  ++RVF  ML +   +W AM++G   +G G + 
Sbjct: 270 ILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEV 329

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           + +F   L   + PD VT + VLS C+H G+VDEG + F  +  +     +  HYGC++D
Sbjct: 330 ISLFKD-LHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIID 388

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           LLGR+G L +AL +I+NMP +    +WG+LLGACRVH +  + E+ A+++LE++P+N   
Sbjct: 389 LLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGN 448

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           YV+L NIYAA   W +  ++R+++L++ + K PG S I ++ V+H F + ++ HP  K+I
Sbjct: 449 YVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDI 508

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
             K+ E+  D+K  G++PD+S V  DV +E KER +  HSEKLA+ FGL+++ PG+TIR+
Sbjct: 509 NAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRV 568

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +KNLR+CVDCH  AK VS VY+RE+ +RDK RFH   HG+C+C DYW
Sbjct: 569 MKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 185/378 (48%), Gaps = 34/378 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H++ I         +  +LVT      G +  A  V  ++P  SV  W TMI GYS+
Sbjct: 62  RQVHARMITARYRPAVFLGTRLVTMYV-RCGALDDARNVLDRMPERSVVSWTTMISGYSQ 120

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            + H   + +++ ML++   P+ YT   +L   +   ++  GK++H  ++K  F+S +FV
Sbjct: 121 TERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFV 180

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            ++L+  Y     +  AR +FD   + DVV+  A+ SGY +    +E   LF ++  +G+
Sbjct: 181 GSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGM 240

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
               VT   +++A + L  LD GK+ H  +   ++   + L+N+L DMY+ CG++ ++  
Sbjct: 241 QCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRR 300

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F N+  + V+SW A++ GY   G                         G+       E 
Sbjct: 301 VFDNMLERSVVSWNAMLMGYGRHGL------------------------GH-------EV 329

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALID 391
           ++LF+++    ++PD  T++++L+ C++ G ++ G +   T + +            +ID
Sbjct: 330 ISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIID 388

Query: 392 MYCKCGDVEKAQRVFREM 409
           +  + G +EKA  +   M
Sbjct: 389 LLGRSGRLEKALNLIENM 406



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 165/344 (47%), Gaps = 38/344 (11%)

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           ++AC + + L  G++ H  +   +  P + L   L  MY  CG +  A  +   +  + V
Sbjct: 49  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 108

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +SWT                                MI GY +  R  EAL LF +M  +
Sbjct: 109 VSWTT-------------------------------MISGYSQTERHVEALDLFIKMLRA 137

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
              P+E+T+ ++LT+C+   ++  G+ V + + K   ++ +FVG++L+DMY K  ++++A
Sbjct: 138 GCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEA 197

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           +RVF  +  +D  + TA+I G A  G  +++LD+F Q+    +  + VT+  +++A +  
Sbjct: 198 RRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGL 257

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
             +D G++  A + ++  +    A    ++D+  + G L  +  V  NM ++ + + W A
Sbjct: 258 ASLDYGKQVHA-LILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNM-LERSVVSWNA 315

Query: 523 -LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
            L+G  R     E+  +      E+ PD+    V L  + + C+
Sbjct: 316 MLMGYGRHGLGHEVISLFKDLHKEVKPDS----VTLLAVLSGCS 355



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 105/228 (46%), Gaps = 1/228 (0%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           + +TAC    AL  G  V   +   + +  +F+G  L+ MY +CG ++ A+ V   M  +
Sbjct: 47  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 106

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
              +WT MI G +      ++LD+F +MLRA  IP+E T   VL++C+    + +G++  
Sbjct: 107 SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVH 166

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
           + + ++   E +      ++D+  ++ ++ EA  V   +P +        + G  +   D
Sbjct: 167 S-LLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLD 225

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
            E  ++  +   E    N   +  L    +     D  +++  +IL +
Sbjct: 226 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRK 273



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           T L++ +    S+   KQ+H+  ++  L     +QN L+    S+ G + Y+ +VF  + 
Sbjct: 248 TTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM-YSKCGKLLYSRRVFDNML 306

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             SV  WN M+ GY R       + ++ D+ K +V+PD+ T   +L G +    V+ G +
Sbjct: 307 ERSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGLVDEGLD 365

Query: 137 LHCHVLKFGFDSSVFVQNALIST 159
           +        FD+ V  Q+AL+ T
Sbjct: 366 I--------FDTVVKEQSALLHT 380


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 350/587 (59%), Gaps = 32/587 (5%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G+++H  ++   +  +VF+   L++ Y  CG +D AR + D   +  VV+W  M SGY +
Sbjct: 29  GRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQ 88

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
            ++  E   LF +M R G +P   T+  VL++C+  + +  GK+ H  + +     ++ +
Sbjct: 89  TERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFV 148

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            ++L DMYA                                   +  AR+ FD +PERD 
Sbjct: 149 GSSLLDMYA-------------------------------KSENIQEARRVFDTLPERDV 177

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           V  TA+I GY +     EAL LFR++ +  ++ +  T  +++TA + L +L+ G+ V   
Sbjct: 178 VSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHAL 237

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           I + ++   + + N+LIDMY KCG +  ++RVF  ML +   +W AM++G   +G G + 
Sbjct: 238 ILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEV 297

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           + +F   L   + PD VT + VLS C+H G+VDEG + F  +  +     +  HYGC++D
Sbjct: 298 ISLFKD-LHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIID 356

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           LLGR+G L +AL +I+NMP +    +WG+LLGACRVH +  + E+ A+++LE++P+N   
Sbjct: 357 LLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGN 416

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           YV+L NIYAA   W +  ++R+++L++ + K PG S I ++ V+H F + ++ HP  K+I
Sbjct: 417 YVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDI 476

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
             K+ E+  D+K  G++PD+S V  DV +E KER +  HSEKLA+ FGL+++ PG+TIR+
Sbjct: 477 NAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRV 536

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +KNLR+CVDCH  AK VS VY+RE+ +RDK RFH   HG+C+C DYW
Sbjct: 537 MKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 185/378 (48%), Gaps = 34/378 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H++ I         +  +LVT      G +  A  V  ++P  SV  W TMI GYS+
Sbjct: 30  RQVHARMITARYRPAVFLGTRLVTMYV-RCGALDDARNVLDRMPERSVVSWTTMISGYSQ 88

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            + H   + +++ ML++   P+ YT   +L   +   ++  GK++H  ++K  F+S +FV
Sbjct: 89  TERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFV 148

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            ++L+  Y     +  AR +FD   + DVV+  A+ SGY +    +E   LF ++  +G+
Sbjct: 149 GSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGM 208

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
               VT   +++A + L  LD GK+ H  +   ++   + L+N+L DMY+ CG++ ++  
Sbjct: 209 QCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRR 268

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F N+  + V+SW A++ GY   G                         G+       E 
Sbjct: 269 VFDNMLERSVVSWNAMLMGYGRHGL------------------------GH-------EV 297

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALID 391
           ++LF+++    ++PD  T++++L+ C++ G ++ G +   T + +            +ID
Sbjct: 298 ISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIID 356

Query: 392 MYCKCGDVEKAQRVFREM 409
           +  + G +EKA  +   M
Sbjct: 357 LLGRSGRLEKALNLIENM 374



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 165/344 (47%), Gaps = 38/344 (11%)

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           ++AC + + L  G++ H  +   +  P + L   L  MY  CG +  A  +   +  + V
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +SWT                                MI GY +  R  EAL LF +M  +
Sbjct: 77  VSWTT-------------------------------MISGYSQTERHVEALDLFIKMLRA 105

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
              P+E+T+ ++LT+C+   ++  G+ V + + K   ++ +FVG++L+DMY K  ++++A
Sbjct: 106 GCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEA 165

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           +RVF  +  +D  + TA+I G A  G  +++LD+F Q+    +  + VT+  +++A +  
Sbjct: 166 RRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGL 225

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
             +D G++  A + ++  +    A    ++D+  + G L  +  V  NM ++ + + W A
Sbjct: 226 ASLDYGKQVHA-LILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNM-LERSVVSWNA 283

Query: 523 -LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
            L+G  R     E+  +      E+ PD+    V L  + + C+
Sbjct: 284 MLMGYGRHGLGHEVISLFKDLHKEVKPDS----VTLLAVLSGCS 323



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 105/228 (46%), Gaps = 1/228 (0%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           + +TAC    AL  G  V   +   + +  +F+G  L+ MY +CG ++ A+ V   M  +
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
              +WT MI G +      ++LD+F +MLRA  IP+E T   VL++C+    + +G++  
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVH 134

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
           + + ++   E +      ++D+  ++ ++ EA  V   +P +        + G  +   D
Sbjct: 135 S-LLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLD 193

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
            E  ++  +   E    N   +  L    +     D  +++  +IL +
Sbjct: 194 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRK 241



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           T L++ +    S+   KQ+H+  ++  L     +QN L+    S+ G + Y+ +VF  + 
Sbjct: 216 TTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM-YSKCGKLLYSRRVFDNML 274

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             SV  WN M+ GY R       + ++ D+ K +V+PD+ T   +L G +    V+ G +
Sbjct: 275 ERSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGLVDEGLD 333

Query: 137 LHCHVLKFGFDSSVFVQNALIST 159
           +        FD+ V  Q+AL+ T
Sbjct: 334 I--------FDTVVKEQSALLHT 348


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/749 (34%), Positives = 382/749 (51%), Gaps = 82/749 (10%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            ++ I    ++HQL Q H+Q I  GL  +     KL T   S    +  A  +F  IP P
Sbjct: 13  FLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKL-THKLSHLKAIDQASLLFSTIPNP 71

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            + L+N +I+ +S  +S  + V +Y  + KS  + PDN+T+ F++ G +           
Sbjct: 72  DLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAH 131

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
               +  GF S +FV +A+++ Y     V  AR +FD   + D V WN M SG  +   F
Sbjct: 132 S---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCF 188

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           DE   +FG+M + G+   S T+  VL   A+L+DL +G        +     +  +   L
Sbjct: 189 DEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGL 248

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
             +Y+ CGE                               ++ AR  F Q+ + D V + 
Sbjct: 249 ACLYSKCGE-------------------------------IETARLLFGQIGQPDLVSYN 277

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           AMI GY   N    ++ LF+E+  S  + +  +IV ++      G L L   +  +  K+
Sbjct: 278 AMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKS 337

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            V ++  V  AL  +Y +  ++E A+ +F E   K   +W AMI G A NG  +K++ +F
Sbjct: 338 GVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLF 397

Query: 438 SQM----------------------------------------------LRASIIPDEVT 451
            +M                                              L + + P  VT
Sbjct: 398 QEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFMLHSRVSPTGVT 457

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           ++ VL AC+H G+V EG E F  M   HG EP   HY CMVDLLGRAG+L++AL+ I+ M
Sbjct: 458 FLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKM 517

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P++P   VWGALLGAC +H+DA +A +A+ ++ ELDP N   YVLL NIY+A   +    
Sbjct: 518 PVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAA 577

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            +R ++  R + KTPGC++IE+   +H F +GD+SHPQ   IY  L+++T  ++  G+  
Sbjct: 578 SVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQT 637

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           +      DV EE+KE  V  HSEKLA+AFGLI+S PG  IRI+KNLR+C+DCH   K +S
Sbjct: 638 ETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFIS 697

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + +R ++VRD  RFHHFK G CSC DYW
Sbjct: 698 KITERVIVVRDANRFHHFKDGICSCGDYW 726


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/559 (40%), Positives = 332/559 (59%), Gaps = 39/559 (6%)

Query: 169 ARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETR-----KLFGEMERKGVLPTSVTIVLV 222
           AR +FD V +  D V +N +  GY R      +      ++F  M  +GV P + T V +
Sbjct: 80  ARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSL 139

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L ACA  +  + G++AH    +     +  +   L +MYA CG+   A  +FG      V
Sbjct: 140 LKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCV 199

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +S+ A                               MI   +R +R  EAL LFREMQ  
Sbjct: 200 VSYNA-------------------------------MIAAAVRSSRPGEALVLFREMQGK 228

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
            ++P   T++S+L+ACA LGALELG WV  Y+ K  + + + V  ALIDMY KCG +E A
Sbjct: 229 GLKPTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDA 288

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
             VF+ M  KD+  W+ MIV  A +G+G +++ +F +M +  + PD++T++GVL AC+H+
Sbjct: 289 IDVFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHS 348

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G+V EG +YF DM   HGI P   HYGC+ DLL R+G L  A + I  +P+ P  I+W  
Sbjct: 349 GLVSEGLQYFDDMK-DHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRT 407

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL AC  H D E+ +   ++IL+LD  +   YV+  N+ A    W+    +R+++ ++G+
Sbjct: 408 LLSACGGHGDFELGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGV 467

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF-LDVG 641
            K PGCS IE++  VHEF AGD  HP+++E    +DE+   LK VGY+P+ S VF +++G
Sbjct: 468 VKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMG 527

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
           EE+K  ++  HSEKLA+AFGL+++ PG T+R+VKNLR+C DCH MAKLVSMV++R +I+R
Sbjct: 528 EEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILR 587

Query: 702 DKTRFHHFKHGSCSCKDYW 720
           D  RFHHF+ G CSC DYW
Sbjct: 588 DLNRFHHFEEGICSCGDYW 606



 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 224/446 (50%), Gaps = 45/446 (10%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE---KGDM 65
           P S   Q+ P++S +  C S+  L Q+H+  +K GL  +P +  +L+T C         +
Sbjct: 18  PKSPPPQQHPVLSHLPHCTSLRTLAQLHAAAVKAGLAAHPALVTRLLTLCTGPDAGPAHL 77

Query: 66  KYACKVFRKIPRPSVCLW-NTMIKGYSRIDSHKN-----GVLIYLDMLKSDVRPDNYTFP 119
            YA +VF ++P P+  +W NT+++GY+R  +  +      V +++ ML+  V PD YTF 
Sbjct: 78  AYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFV 137

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            LLK      A E G++ H   +K G     +V+  LI+ Y  CG+   AR +F  +   
Sbjct: 138 SLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGG 197

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
            VV++NAM +   R  +  E   LF EM+ KG+ PTSVT++ VLSACA L  L++G+  H
Sbjct: 198 CVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVH 257

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
            YV++  +   + +  AL DMYA CG +  A+++F  +++KD  +W+ ++  Y N G   
Sbjct: 258 DYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGY-- 315

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
                                         REA++LF EM+   ++PD+ T + +L AC+
Sbjct: 316 -----------------------------GREAISLFEEMKKEGMKPDDITFLGVLYACS 346

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWT 418
           + G +  G      +  + +   I     + D+  + G +E+A +   E+ +      W 
Sbjct: 347 HSGLVSEGLQYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWR 406

Query: 419 AMIVGLAINGHGDKSLD--MFSQMLR 442
            ++   A  GHGD  L   +F ++L+
Sbjct: 407 TLLS--ACGGHGDFELGKRVFERILK 430


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/694 (36%), Positives = 368/694 (53%), Gaps = 41/694 (5%)

Query: 33  KQIHSQTIKLGLLTNPT---VQNKLVTFCCSEKGDMKYACKVFRKI-PRPSVCLWNTMIK 88
           +  H+Q IK   L NP    + N LV      K D   + ++   + P  SV  W  +I 
Sbjct: 26  RAAHAQIIKT--LDNPLPSFIYNHLVNM--YSKLDRPNSAQLLLSLTPNRSVVTWTALIA 81

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
           G  +     + +  + +M +  ++P+++TFP   K      +   GK++H   +K G  S
Sbjct: 82  GSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQIS 141

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
            VFV  +    Y   G  + AR +FD   + ++ TWNA  S      ++D+    F E  
Sbjct: 142 DVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFR 201

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
            +G  P  +T    L+ACA    L +G++ H +V +     ++ + N L D Y  C ++G
Sbjct: 202 HEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVG 261

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
            +  IF  I   + +SW +                               MI  Y++ + 
Sbjct: 262 CSEIIFSGISKPNDVSWCS-------------------------------MIVSYVQNDE 290

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             +A  +F   +   I P +F + S+L+ACA L  LE+G+ V T   K  V  +IFVG+A
Sbjct: 291 EEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSA 350

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS--II 446
           L+DMY KCG +E A+R F EM  ++  TW AMI G A  G  D ++ +F +M   S  + 
Sbjct: 351 LVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVA 410

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P+ VT+V VLSAC+  G V+ G E F  M  ++GIEP   HY C+VDLLGRAG + +A +
Sbjct: 411 PNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQ 470

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
            IK MP++P   VWGALLGA ++   +E+ ++AA  + ELDP +   +VLL N++AA  R
Sbjct: 471 FIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGR 530

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           W+    +R+ + D GIKK  GCS I     VH F A D SH +  EI   L ++  +++ 
Sbjct: 531 WEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEA 590

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            GY+PD S    D+ EE+K   V+ HSEK+A+AFGLIS   GV IRI KNLR+C DCH  
Sbjct: 591 AGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSA 650

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            K +S +  RE+IVRD   FH F+   CSC+DYW
Sbjct: 651 IKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/593 (39%), Positives = 356/593 (60%), Gaps = 41/593 (6%)

Query: 135 KELHCHVLKF--GFDSSVFVQNALISTYCLC--GEVDMARGIFDVSYKDDVVTWNAMFSG 190
           +++H  +L       S  F+ + ++S   L   G  D AR IF       +  +N++  G
Sbjct: 5   RQIHARILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRG 64

Query: 191 --YKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
             Y ++    E   LF +M  KG   P + T+  VL AC+ +  L+ GK+ H  +     
Sbjct: 65  CLYTKIPS-KEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGF 123

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             +  ++++L + Y+ C E                               + +AR+ FD+
Sbjct: 124 SSSPYVQSSLVNFYSKCEE-------------------------------ITIARKVFDE 152

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           + ER+ V W+AM+ GY R+    EAL +FREMQ   I PDE ++V +L+ACA +GAL++G
Sbjct: 153 ITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIG 212

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           +WV  YI K  +  D+ +  ALI+MY KCG +EKA+ +F EM  KD   W++MIVGLAI+
Sbjct: 213 KWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIH 272

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G  + +L++FS+M  A   P+ VT++G+LSAC H G+V +G+ Y++ M ++ GIEP+  H
Sbjct: 273 GLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSM-LELGIEPSMEH 331

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           YGCMVDLL R G ++EA +    +P  P+ ++W  LL A   +R  + AEM A ++LEL+
Sbjct: 332 YGCMVDLLCRGGLIDEAYDFALIIP-TPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELE 390

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P     Y++L N+YA+ ++ +    +R+M+ + GIK  PGC+ IE++G VH FV GD SH
Sbjct: 391 PWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSH 450

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P+ +EI   L ++   +   GY P +S V   V +E+KE  +Y+HSE+LA+A+GL+ +  
Sbjct: 451 PEAEEIKKTLRDVALKILISGYKPFVSVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKA 510

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             TIRIVKNLR+C DCH + K++S +YDRE+IVRD+ RFH F +G+CSCKDYW
Sbjct: 511 PATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 218/410 (53%), Gaps = 48/410 (11%)

Query: 29  MHQLKQIHSQTIKLGLLTN-PTVQN------KLVTFCC-SEKGDMKYACKVFRKIPRPSV 80
           M  L+QIH++     +LT+ P + +      K+++F   S  G+  YA K+F +IP P +
Sbjct: 1   MQILRQIHAR-----ILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGI 55

Query: 81  CLWNTMIKG--YSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
             +N++I+G  Y++I S K  + ++ DM+ K    P+ +T  F+LK  +  +A+E GK++
Sbjct: 56  FAYNSVIRGCLYTKIPS-KEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQI 114

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H  +L+ GF SS +VQ++L++ Y  C E+ +AR +FD   + ++V W+AM SGY R+   
Sbjct: 115 HAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMI 174

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           +E   +F EM+  G+ P  V++V VLSACA +  LD+GK  H Y+K+  I  +L L  AL
Sbjct: 175 NEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTAL 234

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            +MYA CG +  A EIF  ++ KD  +W++++ G    G  +                  
Sbjct: 235 INMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAE------------------ 276

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                        +AL +F  M+ +  +P+  T + IL+ACA+ G +  G+   + + + 
Sbjct: 277 -------------DALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLEL 323

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
            ++  +     ++D+ C+ G +++A      +   D   W  ++V    N
Sbjct: 324 GIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAYTKN 373



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 147/321 (45%), Gaps = 9/321 (2%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           ++ + KQIH+Q ++ G  ++P VQ+ LV F  S+  ++  A KVF +I   ++  W+ M+
Sbjct: 107 ALEEGKQIHAQILRSGFSSSPYVQSSLVNFY-SKCEEITIARKVFDEITERNLVCWSAMV 165

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
            GY+R+      ++++ +M    + PD  +   +L       A++ GK +H ++ K    
Sbjct: 166 SGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIH 225

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
             + +  ALI+ Y  CG ++ AR IFD     D   W++M  G       ++   +F  M
Sbjct: 226 VDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRM 285

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           E     P  VT + +LSACA    +  GKR    + E  I P++     + D+    G +
Sbjct: 286 EEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLI 345

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA-----MIDG 322
             A +    I   D + W  ++  Y     +  A     ++ E +   W A     + + 
Sbjct: 346 DEAYDFALIIPTPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELE--PWKAENYIILANL 403

Query: 323 YLRVNRFREALTLFREMQTSN 343
           Y  V++  E ++  R+M   N
Sbjct: 404 YASVSQL-EKVSHVRKMMKEN 423


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/683 (35%), Positives = 355/683 (51%), Gaps = 63/683 (9%)

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRD 128
           ++F  +P      +N +I G+S   S    V +Y  +L+ + VRP   T   ++   +  
Sbjct: 100 RLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASAL 159

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYC--------------------------- 161
                G  +HC VL+ GF +  FV + L+  Y                            
Sbjct: 160 SDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLI 219

Query: 162 ----LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
                C  ++ A+G+F +    D +TW  M +G  +     E   +F  M  +GV     
Sbjct: 220 TGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQY 279

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T   +L+AC  L   + GK+ H Y+       N+ + +AL DMY+ C             
Sbjct: 280 TFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR------------ 327

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
                               + +A   F +M  R+ + WTAMI GY +     EA+  F 
Sbjct: 328 -------------------SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFS 368

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
           EMQ   I+PD+FT+ S++++CANL +LE G         + +   I V NAL+ +Y KCG
Sbjct: 369 EMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCG 428

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            +E A R+F EM   D+ +WTA++ G A  G   +++D+F +ML   + PD VT++GVLS
Sbjct: 429 SIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLS 488

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           AC+  G+V++G +YF  M   H I P + HY CM+DL  R+G   EA E IK MP  P++
Sbjct: 489 ACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDA 548

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
             W  LL +CR+  + E+ + AA+ +LE DP N A YVLLC+++AA  +W     LR+ +
Sbjct: 549 FGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGM 608

Query: 578 LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF 637
            DR +KK PGCS I+    VH F A D+SHP +  IY KL+ + S +   GY PD+S V 
Sbjct: 609 RDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVL 668

Query: 638 LDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDRE 697
            DV + DK   +  HSEKLA+AFGLI     + IRIVKNLR+CVDCH   K +S +  R+
Sbjct: 669 HDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRD 728

Query: 698 VIVRDKTRFHHFKHGSCSCKDYW 720
           ++VRD  RFH F  G+CSC D+W
Sbjct: 729 ILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/543 (25%), Positives = 239/543 (44%), Gaps = 55/543 (10%)

Query: 130 AVEFGKELHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
            V     +HC +LK F      F+ N L++ Y   G +  AR +FD     ++ T NA+ 
Sbjct: 27  GVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALL 86

Query: 189 SGYKRVKQFDETRKLFGEMERK--------------------------------GVLPTS 216
           S     +   +  +LF  M  +                                 V PT 
Sbjct: 87  SALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTR 146

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
           +T+  ++   + L D  +G   H  V          + + L DMYA  G +  A  +F  
Sbjct: 147 ITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQE 206

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
           ++ K V+ +  ++TG +    ++ A+  F  M +RD + WT M+ G  +     EAL +F
Sbjct: 207 MEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVF 266

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
           R M+   +  D++T  SILTAC  L A E G+ +  YI +   ++++FVG+AL+DMY KC
Sbjct: 267 RRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKC 326

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
             +  A+ VFR M  ++  +WTAMIVG   N   ++++  FS+M    I PD+ T   V+
Sbjct: 327 RSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVI 386

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           S+C +   ++EG ++   + +  G+         +V L G+ G + +A  +   M    +
Sbjct: 387 SSCANLASLEEGAQFHC-LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-D 444

Query: 517 SIVWGALL-GACRVHRDAEMAEMAAKQILE-LDPDNEAVYVLLCNIYAACNRWDNFRELR 574
            + W AL+ G  +  +  E  ++  K ++  L PD     V    + +AC+R        
Sbjct: 445 QVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDG----VTFIGVLSACSR-------- 492

Query: 575 QMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS 634
                 G+ +  GC   +     H+ V  D  +    ++Y +        +F+  MP   
Sbjct: 493 -----AGLVE-KGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSP 546

Query: 635 EVF 637
           + F
Sbjct: 547 DAF 549



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 147/323 (45%), Gaps = 12/323 (3%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQIH+   +     N  V + LV    S+   ++ A  VFR++   ++  W  MI GY +
Sbjct: 298 KQIHAYITRTWYEDNVFVGSALVDMY-SKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQ 356

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               +  V  + +M    ++PD++T   ++       ++E G + HC  L  G    + V
Sbjct: 357 NACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL++ Y  CG ++ A  +FD     D V+W A+ +GY +  +  ET  LF +M   G+
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGL 476

Query: 213 LPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
            P  VT + VLSAC++   ++ G        K+  IVP       + D+Y+  G    A 
Sbjct: 477 KPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAE 536

Query: 272 EIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTAMIDGYL 324
           E    + +  D   W  +++    RG +++ +   + + E D      YVL  +M   + 
Sbjct: 537 EFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSM---HA 593

Query: 325 RVNRFREALTLFREMQTSNIRPD 347
              ++ E   L R M+   ++ +
Sbjct: 594 AKGQWTEVAHLRRGMRDRQVKKE 616



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 37/223 (16%)

Query: 19  LISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L S I +C ++  L+   Q H   +  GL+   TV N LVT    + G ++ A ++F ++
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTL-YGKCGSIEDAHRLFDEM 440

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  W  ++ GY++    K  + ++  ML + ++PD  TF  +L   +R   VE G 
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKG- 499

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
                                      C   D  +   D+   DD   +  M   Y R  
Sbjct: 500 ---------------------------CDYFDSMQKDHDIVPIDD--HYTCMIDLYSRSG 530

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           +F E  +   +M      P +     +LS+C    ++++GK A
Sbjct: 531 RFKEAEEFIKQMPHS---PDAFGWATLLSSCRLRGNMEIGKWA 570


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/597 (38%), Positives = 353/597 (59%), Gaps = 34/597 (5%)

Query: 101 LIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF-DSSVFVQNALIS 158
           L  LD++ +  + PD   +  LLK  TR   VE G+ +H H++   F D+ + +QN +++
Sbjct: 72  LYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVN 131

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y  CG +D AR +FD     D+VTW A+ +G+ +  +  +   LF +M R G+ P   T
Sbjct: 132 MYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFT 191

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           +  +L A      LD G + H +  +     ++ + +AL DMYA CG M           
Sbjct: 192 LSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHM----------- 240

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
                               D A+  FD MP +  V W A+I G+ R      AL L  +
Sbjct: 241 --------------------DAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWK 280

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           MQ  N +P  FT  S+ +ACA++GALE G+WV  ++ K+ +K   F+GN L+DMY K G 
Sbjct: 281 MQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGS 340

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           ++ A+RVF  +++ D  +W  M+ G A +G G ++LD F QMLR  I P+E++++ VL+A
Sbjct: 341 IDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTA 400

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C+H+G++DEG  YF ++  ++ +EP+  HY   VDLLGR G L+ A   I+ MP++P + 
Sbjct: 401 CSHSGLLDEGLYYF-ELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAA 459

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           VWGALLGACR+H++ E+   AA++  ELDP +    +LL NIYA+  RW +  ++R+M+ 
Sbjct: 460 VWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMK 519

Query: 579 DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL 638
           + G+KK P CS +E+   VH FVA D++HPQ KEI  K +E++  +K +GY+PD S V L
Sbjct: 520 ESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIKEIGYVPDTSHVLL 579

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
            V ++++E  +  HSEKLA+AF L+++  G  IRI KN+R+C DCH   K VS +Y+
Sbjct: 580 FVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKIYE 636



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 195/403 (48%), Gaps = 35/403 (8%)

Query: 23  IETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           ++ C  + +++Q   +H+  +    L N  V   ++    ++ G +  A ++F ++P   
Sbjct: 94  LKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKD 153

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           +  W  +I G+S+ +  ++ +L++  ML+  ++P+++T   LLK    +  ++ G +LH 
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHA 213

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
             LK+G+ SSV+V +AL+  Y  CG +D A+  FD       V+WNA+ SG+ R  + + 
Sbjct: 214 FCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEH 273

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
              L  +M+RK   PT  T   V SACA +  L+ GK  H ++ +  +     + N L D
Sbjct: 274 ALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLD 333

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA  G +  A  +F  +   DV+SW  ++TG    G                       
Sbjct: 334 MYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHG----------------------- 370

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
                     +E L  F +M    I P+E + + +LTAC++ G L+ G +    + K KV
Sbjct: 371 --------LGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKV 422

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
           + D+      +D+  + G +++A+R  REM +      W A++
Sbjct: 423 EPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
            G G  +LD+     R S++PD   Y  +L  CT  G V++GR   A +   H ++ +  
Sbjct: 68  GGTGLYALDLIQ---RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLV 124

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE- 545
               +V++  + G L++A  +   MP K + + W AL+     +     A +   Q+L  
Sbjct: 125 LQNIIVNMYAKCGCLDDARRMFDEMPTK-DMVTWTALIAGFSQNNRPRDALLLFPQMLRL 183

Query: 546 -LDPDNEAVYVLL 557
            L P++  +  LL
Sbjct: 184 GLQPNHFTLSSLL 196


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/606 (38%), Positives = 356/606 (58%), Gaps = 52/606 (8%)

Query: 135 KELHCHVLKFGFD---SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           K+LH   L+  +    +++F+   ++       +V+ A  +FD         WN +    
Sbjct: 65  KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRAC 124

Query: 192 KR-VKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
              V + +E   L+ +M ER    P   T   VL ACA +     GK+ H  + +     
Sbjct: 125 AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGG 184

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ + N L  +Y +CG +                               D+AR+ FD+MP
Sbjct: 185 DVYVNNGLIHLYGSCGCL-------------------------------DLARKVFDEMP 213

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ER  V W +MID  +R   +  AL LFREMQ S   PD +T+ S+L+ACA LG+L LG W
Sbjct: 214 ERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTW 272

Query: 370 VKTYIDKN---KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
              ++ +     V  D+ V N+LI+MYCKCG +  A++VF+ M ++D  +W AMI+G A 
Sbjct: 273 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 332

Query: 427 NGHGDKSLDMFSQML--RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           +G  +++++ F +M+  R ++ P+ VT+VG+L AC H G V++GR+YF  M   + IEP 
Sbjct: 333 HGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPA 392

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC-RVHRDAEMAEMAAKQI 543
             HYGC+VDL+ RAG++ EA++++ +MPMKP++++W +LL AC +     E++E  A+ I
Sbjct: 393 LEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 452

Query: 544 LELDPDNEA-------VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           +    DNE+        YVLL  +YA+ +RW++   +R+++ + GI+K PGCS IE+NG+
Sbjct: 453 IGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGI 512

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED--KERAVYQHSE 654
            HEF AGD SHPQTK+IY +L  +   L+ +GY+PD S+  L     D  KE ++  HSE
Sbjct: 513 SHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSE 572

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           +LA+AFGLI+  P   IRI KNLR+C DCH + KL+S V++ E+IVRD+ RFHHFK GSC
Sbjct: 573 RLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 632

Query: 715 SCKDYW 720
           SC DYW
Sbjct: 633 SCLDYW 638



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 212/427 (49%), Gaps = 41/427 (9%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPT---VQNKLVTFCCSE 61
           SS S  +       + S  ETC  M QLKQ+H+ T++      P    +  K++    S 
Sbjct: 37  SSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLS-SS 95

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKN-GVLIYLDML-KSDVRPDNYTFP 119
             D+ YA +VF  I   S  +WNT+I+  +   S K    ++Y  ML + +  PD +TFP
Sbjct: 96  FSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFP 155

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           F+LK          GK++HC ++K GF   V+V N LI  Y  CG +D+AR +FD   + 
Sbjct: 156 FVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER 215

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
            +V+WN+M     R  ++D   +LF EM+R    P   T+  VLSACA L  L +G  AH
Sbjct: 216 SLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAH 274

Query: 240 RY-VKEC--KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
            + +++C   +  +++++N+L +MY  CG +  A ++F  ++ +D+ SW A++ G+   G
Sbjct: 275 AFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHG 334

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
           + + A  +FD+M ++                  RE           N+RP+  T V +L 
Sbjct: 335 RAEEAMNFFDRMVDK------------------RE-----------NVRPNSVTFVGLLI 365

Query: 357 ACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
           AC + G +  G ++    +    ++  +     ++D+  + G + +A  +   M ++ D 
Sbjct: 366 ACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDA 425

Query: 415 FTWTAMI 421
             W +++
Sbjct: 426 VIWRSLL 432


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/606 (38%), Positives = 356/606 (58%), Gaps = 52/606 (8%)

Query: 135 KELHCHVLKFGFD---SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           K+LH   L+  +    +++F+   ++       +V+ A  +FD         WN +    
Sbjct: 56  KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRAC 115

Query: 192 KR-VKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
              V + +E   L+ +M ER    P   T   VL ACA +     GK+ H  + +     
Sbjct: 116 AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGG 175

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ + N L  +Y +CG +                               D+AR+ FD+MP
Sbjct: 176 DVYVNNGLIHLYGSCGCL-------------------------------DLARKVFDEMP 204

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ER  V W +MID  +R   +  AL LFREMQ S   PD +T+ S+L+ACA LG+L LG W
Sbjct: 205 ERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTW 263

Query: 370 VKTYIDKN---KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
              ++ +     V  D+ V N+LI+MYCKCG +  A++VF+ M ++D  +W AMI+G A 
Sbjct: 264 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 323

Query: 427 NGHGDKSLDMFSQML--RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           +G  +++++ F +M+  R ++ P+ VT+VG+L AC H G V++GR+YF  M   + IEP 
Sbjct: 324 HGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPA 383

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC-RVHRDAEMAEMAAKQI 543
             HYGC+VDL+ RAG++ EA++++ +MPMKP++++W +LL AC +     E++E  A+ I
Sbjct: 384 LEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 443

Query: 544 LELDPDNEA-------VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           +    DNE+        YVLL  +YA+ +RW++   +R+++ + GI+K PGCS IE+NG+
Sbjct: 444 IGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGI 503

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED--KERAVYQHSE 654
            HEF AGD SHPQTK+IY +L  +   L+ +GY+PD S+  L     D  KE ++  HSE
Sbjct: 504 SHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSE 563

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           +LA+AFGLI+  P   IRI KNLR+C DCH + KL+S V++ E+IVRD+ RFHHFK GSC
Sbjct: 564 RLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 623

Query: 715 SCKDYW 720
           SC DYW
Sbjct: 624 SCLDYW 629



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 212/427 (49%), Gaps = 41/427 (9%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPT---VQNKLVTFCCSE 61
           SS S  +       + S  ETC  M QLKQ+H+ T++      P    +  K++    S 
Sbjct: 28  SSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLS-SS 86

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKN-GVLIYLDML-KSDVRPDNYTFP 119
             D+ YA +VF  I   S  +WNT+I+  +   S K    ++Y  ML + +  PD +TFP
Sbjct: 87  FSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFP 146

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           F+LK          GK++HC ++K GF   V+V N LI  Y  CG +D+AR +FD   + 
Sbjct: 147 FVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER 206

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
            +V+WN+M     R  ++D   +LF EM+R    P   T+  VLSACA L  L +G  AH
Sbjct: 207 SLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAH 265

Query: 240 RY-VKEC--KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
            + +++C   +  +++++N+L +MY  CG +  A ++F  ++ +D+ SW A++ G+   G
Sbjct: 266 AFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHG 325

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
           + + A  +FD+M ++                  RE           N+RP+  T V +L 
Sbjct: 326 RAEEAMNFFDRMVDK------------------RE-----------NVRPNSVTFVGLLI 356

Query: 357 ACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
           AC + G +  G ++    +    ++  +     ++D+  + G + +A  +   M ++ D 
Sbjct: 357 ACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDA 416

Query: 415 FTWTAMI 421
             W +++
Sbjct: 417 VIWRSLL 423


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/700 (34%), Positives = 381/700 (54%), Gaps = 35/700 (5%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP--SV 80
           + +C ++  L ++H+  I     +   + +  +    +  GD+  A       P    S+
Sbjct: 10  LSSCAALRTLTRLHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLATAPTSPSSI 69

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
             WN ++  +SR  S    + ++   L    RPD+ TF   L    R   +  G+ +   
Sbjct: 70  PAWNALLAAHSRGASPHEALRVF-RALPPAARPDSTTFTLALSACARLGDLATGEVVTDR 128

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
               G+ + +FV +++++ Y  CG +D A  +FD   K D VTW+ M +G+    Q  + 
Sbjct: 129 ASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQA 188

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
            +++  M R G+    V IV V+ ACA   D  +G   H Y+    +  ++++  +L DM
Sbjct: 189 IEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDM 248

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           YA               KN                G  D AR+ F+ MP R+ V W+A+I
Sbjct: 249 YA---------------KN----------------GLFDQARRVFELMPHRNDVSWSALI 277

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
               +     EAL LFR MQ S + P+   +V  L AC++LG L+LG+ +  +I +  ++
Sbjct: 278 SQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRT-LE 336

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D  VG A+IDMY KCG +  AQ +F +++ +D  +W  MI     +G G  +L +F +M
Sbjct: 337 LDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEM 396

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
            R  + PD  T+  +LSA +H+G+V+EG+ +F  M  ++GIEP E H  C+VDLL R+G 
Sbjct: 397 KRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGL 456

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           + EA  ++ ++  KP   +  ALL  C  +   E+ E  A++ILEL P +  V  L+ N+
Sbjct: 457 VEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNL 516

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YAA   W   RE+R+++ D G KK PGCS IE+ G +H FV  D+SHPQ ++I   + ++
Sbjct: 517 YAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKL 576

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
            S+++ +GY+P    V+ D+ E  KE+ + +HSE+LA AFGL+++ PG  + ++KNLR+C
Sbjct: 577 DSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVC 636

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            DCH   K +S + DRE++VRD  RFHHFK G+CSC DYW
Sbjct: 637 GDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/593 (38%), Positives = 333/593 (56%), Gaps = 34/593 (5%)

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           +E G+ +H  +   GF  +   QN L+S Y  CG +D AR IF+   +  VV+W+AM   
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 191 YKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV- 248
           Y    +  E   LF  M   G V P ++T   V +AC  ++DL+ G+  H        + 
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 249 -PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             N ILENAL +M                               Y+  G ++ AR+ FD 
Sbjct: 121 SSNAILENALLNM-------------------------------YVRCGSLEEARKVFDT 149

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           M   D   WT+MI          EAL LF  M    I P   T+ S+L ACA  GAL++G
Sbjct: 150 MDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVG 209

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           + + + +D +   + +    AL+DMY KCG +E + +VF  M  ++  +WTAMI  LA +
Sbjct: 210 KQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQH 269

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G GD++L++F +M    ++ D  T++ VL AC+H G++ E  E+F  M   + I P E H
Sbjct: 270 GQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETH 329

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y   +D +GRAG L +A E+I +MP  P ++ W  LL ACR+H  AE A   A+ + +L 
Sbjct: 330 YCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLA 389

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P++   Y LL N+YAA  R+ +   +R+ + DRG+KK PG S IE+   VHEFVAGD++H
Sbjct: 390 PEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAH 449

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P   EI L+L+++   ++  GY+P+  +V   V EE+KE+ +  HSEKLA+AFGLI++ P
Sbjct: 450 PSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPP 509

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G  + IVKNLR+C DCH   K+++ +  R ++VRD  RFHHF+ G CSCKDYW
Sbjct: 510 GTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 192/432 (44%), Gaps = 42/432 (9%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
           M + ++IHS+    G       QN LV+   ++ G +  A  +F  I   +V  W+ MI 
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMY-AKCGCLDEARAIFNGILERTVVSWSAMIG 59

Query: 89  GYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFP--FLLKGFTRDIAVEFGKELHCHVLKFG 145
            Y+     +  +L++  M     V P+  TF   F   G   D+  E G+E+H   +  G
Sbjct: 60  AYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDL--EQGREIHALAMASG 117

Query: 146 --FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
               S+  ++NAL++ Y  CG ++ AR +FD     D  +W +M +      +  E  +L
Sbjct: 118 ELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALEL 177

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           F  M  +G+ PTSVT+  VL+ACA    L VGK+ H  +       +++ + AL DMYA 
Sbjct: 178 FHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAK 237

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           CG +  + ++F  ++ ++ +SWTA++      GQ D                        
Sbjct: 238 CGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGD------------------------ 273

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL-ELGEWVKTYIDKNKVKND 382
                  EAL LF+EM    +  D  T + +L AC++ G + E  E+  + ++   +   
Sbjct: 274 -------EALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPT 326

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
                  +D   + G ++ A+ +   M    +  TW  ++    I+   +++  + +++L
Sbjct: 327 ETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKV-AELL 385

Query: 442 RASIIPDEVTYV 453
                 D + Y 
Sbjct: 386 SKLAPEDSMAYT 397


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/594 (37%), Positives = 359/594 (60%), Gaps = 34/594 (5%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC--GEVDMARGIFDVSYKDDVVTWNAM 187
           ++E  K++H  +LKFG     F  +++++T  L     +D A  IF    +     +N M
Sbjct: 44  SLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTM 103

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
             GY     F+    L+ +M ++ V P + T  +VL ACA+L  +  G + H +V +  +
Sbjct: 104 IRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGL 163

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             ++ ++N+L +MY  C ++  +  IF  ++ K V S                       
Sbjct: 164 EDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVAS----------------------- 200

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI-RPDEFTIVSILTACANLGALEL 366
                   W+A+I  +  +  + E L LF +M      R +E  +V++L+AC +LGA  L
Sbjct: 201 --------WSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHL 252

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G      + KN  + ++ V  +L+DMY KCG ++K   +F+ M RK++ +++ +I GL +
Sbjct: 253 GRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGL 312

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G+G ++L +FS+M+   + PD+VTYV VLSAC+H+G+VDEG + F  M  ++ IEP   
Sbjct: 313 HGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQ 372

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HYGCMVDL GRAG L EA +++++MP+K N ++W +LL AC+VH + ++ E+AA+ +  L
Sbjct: 373 HYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRL 432

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
              N + Y++L N+YA   +W+N  ++R  +++RG+ +TPG S++E+   V++FV+ DKS
Sbjct: 433 SSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDKS 492

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
           + ++  IY  + +M   L+F GYMPD S+V LDV EE+K   +  HS+KLA+AF LI + 
Sbjct: 493 YCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGERLKGHSQKLAIAFALIHTS 552

Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            G  IRI++NLRMC DCH   KLVSM+Y+RE+ VRD+ RFHHFK G+CSC+DYW
Sbjct: 553 QGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKDGNCSCRDYW 606



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 216/420 (51%), Gaps = 41/420 (9%)

Query: 15  QETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFR 73
           +E   +  ++ C+S+ + KQ+H Q +K GL  +    + ++  C  S+   M YAC +F+
Sbjct: 31  KEQEYLCLVKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQ 90

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           ++  P+   +NTMI+GY    + +N + +Y DML+ +V PDN+T+P +LK   R   ++ 
Sbjct: 91  QLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQE 150

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G ++H HV K G +  V+VQN+LI+ Y  C +++M+  IF    +  V +W+A+ + +  
Sbjct: 151 GMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHAS 210

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +  + E   LF +M R+G      +I++ VLSAC  L    +G+ AH  + +     N+ 
Sbjct: 211 LAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVA 270

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +  +L DMY  CG +   L +F N+  K+ +S++ I++G                     
Sbjct: 271 VMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGL-------------------- 310

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
                  + GY      R+AL +F EM    + PD+ T VS+L+AC++ G ++ G     
Sbjct: 311 ------GLHGY-----GRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEG---LD 356

Query: 373 YIDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
             DK K +  I         ++D+  + G +E+A ++ + M ++ +   W +++    ++
Sbjct: 357 LFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVH 416


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/591 (36%), Positives = 345/591 (58%), Gaps = 3/591 (0%)

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
             K+LH  ++K G +    + N L++ Y  CG +  A  +FD   + D V W ++ +   
Sbjct: 21  LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACN 80

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV--GKRAHRYVKECKIVPN 250
              +      +   +   G  P       ++ ACA L  L V  GK+ H          +
Sbjct: 81  LSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDD 140

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
            +++++L DMYA  G   +   +F +I + + ISWT +++GY   G+   A + F Q P 
Sbjct: 141 DVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPY 200

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-PDEFTIVSILTACANLGALELGEW 369
           R+   WTA+I G ++     +A  LF EM+   I   D   + S++ ACANL   ELG+ 
Sbjct: 201 RNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQ 260

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           +   +     ++ +F+ NALIDMY KC D+  A+ +F EM RKD  +WT++IVG A +G 
Sbjct: 261 MHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQ 320

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
            +++L ++ +M+ A + P+EVT+VG++ AC+H G+V +GR  F  M   HGI P+  HY 
Sbjct: 321 AEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYT 380

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           C++DL  R+GHL+EA  +I+ MP+ P+   W ALL +C+ H + +MA   A  +L L P+
Sbjct: 381 CLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPE 440

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           + + Y+LL NIYA    W++  ++R++++    KK PG S I++    H F AG+ SHP 
Sbjct: 441 DPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPM 500

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
             EI   + E+  +++  GY PD S V  D+ +++KER ++ HSE+LA+A+GL+ + PG 
Sbjct: 501 RDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGT 560

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            IRIVKNLR+C DCH + KL+S + +RE+ VRD  R+HHFK G+CSC D+W
Sbjct: 561 VIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 234/525 (44%), Gaps = 89/525 (16%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K++H+Q IK GL  +  + N L+     + G ++ A ++F  +PR     W +++   + 
Sbjct: 23  KKLHAQIIKAGLNQHEPIPNTLLN-AYGKCGLIQDALQLFDALPRRDPVAWASLLTACNL 81

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR--DIAVEFGKELHCHVLKFGFDSSV 150
            +     + I   +L +   PD++ F  L+K       + V+ GK++H       F    
Sbjct: 82  SNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDD 141

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV-KQFDETR-------- 201
            V+++LI  Y   G  D  R +FD     + ++W  M SGY R  ++F+  R        
Sbjct: 142 VVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYR 201

Query: 202 ----------------------KLFGEMERKGVLPTSVTIVLVLS----ACAKLKDLDVG 235
                                  LF EM  +G+   SVT  LVLS    ACA L   ++G
Sbjct: 202 NLFAWTALISGLVQSGNGVDAFHLFVEMRHEGI---SVTDPLVLSSVVGACANLALWELG 258

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           K+ H  V        L + NAL DMYA C ++  A  IF  +  KDV+SWT+I+ G    
Sbjct: 259 KQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQH 318

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           GQ +                               EAL L+ EM  + ++P+E T V ++
Sbjct: 319 GQAE-------------------------------EALALYDEMVLAGVKPNEVTFVGLI 347

Query: 356 TACANLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKD 413
            AC++ G +  G  + +T ++ + +   +     L+D++ + G +++A+ + R M +  D
Sbjct: 348 HACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPD 407

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGM---VDEGR 469
           + TW A++     +G+   ++ +   +L  ++ P D  +Y+ + +     GM   V + R
Sbjct: 408 EPTWAALLSSCKRHGNTQMAVRIADHLL--NLKPEDPSSYILLSNIYAGAGMWEDVSKVR 465

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           +    MT++    P    Y C +D LG+  H+  A E   + PM+
Sbjct: 466 KLM--MTLEAKKAPG---YSC-ID-LGKGSHVFYAGET--SHPMR 501


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/664 (36%), Positives = 366/664 (55%), Gaps = 42/664 (6%)

Query: 13  LTQETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
            T  +P    ++ C    S    + +H + I+        +QN+L+     + G + YA 
Sbjct: 21  FTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLID-VYGKCGYLDYAR 79

Query: 70  KVFRKI-------------------------------PRPSVCLWNTMIKGYSRIDSHKN 98
           KVF ++                               P    C WN+MI G+++ D  + 
Sbjct: 80  KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEE 139

Query: 99  GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
            +  ++ M + D   ++Y+F   L   +R   ++ G ++H  + K  +   VF+ + LI 
Sbjct: 140 ALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLID 199

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y  CG V  AR +FD   + +VV+WN + + Y++     E  + FG M   G  P  VT
Sbjct: 200 FYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVT 259

Query: 219 IVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           +  V+SACA L     G + H R VK  K   +LIL NAL DMYA CG +  A  +F  +
Sbjct: 260 LASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRM 319

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
             ++ +S T +V+GY     V  AR  F  + ++D V W A+I GY +     EAL LFR
Sbjct: 320 PVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFR 379

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK------NDIFVGNALID 391
            ++  ++ P  +T  ++L A ANL  LELG    +++ K+  +       DIFVGN+LID
Sbjct: 380 MLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLID 439

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCG VE+  RVF  M+ KD  +W  MI+G A NG+G ++L++F +ML +   PD VT
Sbjct: 440 MYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVT 499

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
            +G L AC+H G+V+EGR YF  MT +HG+ P + HY CMVDLLGRAG L EA ++I++M
Sbjct: 500 MIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESM 559

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P +P+++VW +LL AC+VHR+  + +  A++I E+DP +   YVLL N+Y+   RW +  
Sbjct: 560 PKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAV 619

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            +R+++  RG+ K PGCS I++   VH F+  DK HPQ KEIY  L  +T  ++  GY+P
Sbjct: 620 SVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYVP 679

Query: 632 DISE 635
           D S+
Sbjct: 680 DASD 683


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/682 (35%), Positives = 371/682 (54%), Gaps = 37/682 (5%)

Query: 43  GLLTNPTVQNKLVTFCCS--EKGDMKYACKVFRKIPRPSVCL--WNTMIKGYSRIDSHKN 98
            LL   + QN   +   +    G +  A       P    C+  WN ++   SR  S   
Sbjct: 36  ALLVVSSSQNLFPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGA 95

Query: 99  GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
            + ++   L S  RPD+ TF   L    R   ++  + +       G+   VFV +AL+ 
Sbjct: 96  ALRVF-RALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLH 154

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y  CG +  A  +FD   + D V W+ M +G+    +  E   ++  M   GV    V 
Sbjct: 155 VYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVV 214

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           +V V+ AC    +  +G   H       +  ++++  +L DMYA               K
Sbjct: 215 MVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYA---------------K 259

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
           N                G  D+ARQ F  MP R+ V W A+I G+ +     EAL LFRE
Sbjct: 260 N----------------GHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFRE 303

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M TS ++PD   +VS L ACA++G L+LG+ +  +I + +++    +G A++DMY KCG 
Sbjct: 304 MSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILR-RLEFQCILGTAVLDMYSKCGS 362

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           +E A+++F ++  +D   W AMI     +G G  +L +F ++    I PD  T+  +LSA
Sbjct: 363 LESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSA 422

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
            +H+G+V+EG+ +F  M  + GIEP E H  C+VDLL R+G + EA E++ +M  +P   
Sbjct: 423 LSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIP 482

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           +W ALL  C  ++  E+ E  AK+ILE  P++  V  L+ N+YAA  +WD  RE+R+++ 
Sbjct: 483 IWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMK 542

Query: 579 DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL 638
           D G KK PG S+IE++G  H FV  D+SHPQ +EI   + +++ +++ +GY+P    V+ 
Sbjct: 543 DSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYH 602

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
           D+ E+ KE+ +  HSE+LA+AFGL+++ PG  + I+KNLR+C DCH   K +S + DRE+
Sbjct: 603 DLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREI 662

Query: 699 IVRDKTRFHHFKHGSCSCKDYW 720
           +VRD  RFHHFK G+CSC DYW
Sbjct: 663 VVRDAKRFHHFKDGACSCGDYW 684


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/606 (38%), Positives = 356/606 (58%), Gaps = 52/606 (8%)

Query: 135 KELHCHVLKFGFD---SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           K+LH   L+  +    +++F+   ++       +V+ A  +FD         WN +    
Sbjct: 122 KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRAC 181

Query: 192 KR-VKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
              V + +E   L+ +M ER    P   T   VL ACA +     GK+ H  + +     
Sbjct: 182 AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGG 241

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ + N L  +Y +CG +                               D+AR+ FD+MP
Sbjct: 242 DVYVNNGLIHLYGSCGCL-------------------------------DLARKVFDEMP 270

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ER  V W +MID  +R   +  AL LFREMQ S   PD +T+ S+L+ACA LG+L LG W
Sbjct: 271 ERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTW 329

Query: 370 VKTYIDKN---KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
              ++ +     V  D+ V N+LI+MYCKCG +  A++VF+ M ++D  +W AMI+G A 
Sbjct: 330 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 389

Query: 427 NGHGDKSLDMFSQML--RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           +G  +++++ F +M+  R ++ P+ VT+VG+L AC H G V++GR+YF  M   + IEP 
Sbjct: 390 HGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPA 449

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC-RVHRDAEMAEMAAKQI 543
             HYGC+VDL+ RAG++ EA++++ +MPMKP++++W +LL AC +     E++E  A+ I
Sbjct: 450 LEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 509

Query: 544 LELDPDNEA-------VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           +    DNE+        YVLL  +YA+ +RW++   +R+++ + GI+K PGCS IE+NG+
Sbjct: 510 IGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGI 569

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED--KERAVYQHSE 654
            HEF AGD SHPQTK+IY +L  +   L+ +GY+PD S+  L     D  KE ++  HSE
Sbjct: 570 SHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSE 629

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           +LA+AFGLI+  P   IRI KNLR+C DCH + KL+S V++ E+IVRD+ RFHHFK GSC
Sbjct: 630 RLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 689

Query: 715 SCKDYW 720
           SC DYW
Sbjct: 690 SCLDYW 695



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/479 (29%), Positives = 228/479 (47%), Gaps = 73/479 (15%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPT---VQNKLVTFCCSEKGDMKYACKVFRKI 75
           + S  ETC  M QLKQ+H+ T++      P    +  K++    S   D+ YA +VF  I
Sbjct: 108 IFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLS-SSFSDVNYAFRVFDSI 166

Query: 76  PRPSVCLWNTMIKGYSRIDSHKN-GVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEF 133
              S  +WNT+I+  +   S K    ++Y  ML + +  PD +TFPF+LK          
Sbjct: 167 ENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE 226

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK++HC ++K GF   V+V N LI  Y  CG +D+AR +FD   +  +V+WN+M     R
Sbjct: 227 GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 286

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKEC--KIVPN 250
             ++D   +LF EM+R    P   T+  VLSACA L  L +G  AH + +++C   +  +
Sbjct: 287 FGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMD 345

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           ++++N+L +MY  CG +  A ++F  ++ +D+ SW A++ G+   G+ + A  +FD+M +
Sbjct: 346 VLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVD 405

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           +                  RE           N+RP+  T V +L AC + G        
Sbjct: 406 K------------------RE-----------NVRPNSVTFVGLLIACNHRG-------- 428

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             +++K +   D+ V +     YC    +E A              +  ++  +A  G+ 
Sbjct: 429 --FVNKGRQYFDMMVRD-----YC----IEPALE-----------HYGCIVDLIARAGYI 466

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
            +++DM   M    + PD V +  +L AC   G   E  E  A   I    E NE+  G
Sbjct: 467 TEAIDMVMSM---PMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTK-EDNESSNG 521


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/557 (40%), Positives = 328/557 (58%), Gaps = 31/557 (5%)

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G V  A  IF  ++  ++  WN +  GY           L+ +M   G+ P S T   VL
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           +AC KL  L  G+  H  + +  +     L N L  +YAACG M +A  +F         
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMF--------- 125

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
                                 D+MPE D   W+ M+ GY +  +  E L L REMQ  N
Sbjct: 126 ----------------------DEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAEN 163

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           +  D FT+ S++  C +LG L+LG+WV +YIDK  VK D+ +G AL+ MY KCG ++ A 
Sbjct: 164 VSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNAL 223

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
           +VF+ M  +D  TW+ MI G AI+GH +K+L +F  M R+ IIP+ VT+  VLSA +H+G
Sbjct: 224 KVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSG 283

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
           +V++G + F  M  ++ I P   HYGCMVDL  RAG +  A + I+ MP++PN ++W  L
Sbjct: 284 LVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTL 343

Query: 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           LGAC+ H    + E  +++IL+LDP +   YV + N+YA+  RW +  ++R ++ ++  K
Sbjct: 344 LGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPK 403

Query: 584 KTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEE 643
           K  G S IE+N +VH+F+ G++SHP+ ++IY  L +M   LK VG++    +V  D+ EE
Sbjct: 404 KQHGWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARKLKQVGHVASTVDVLHDIDEE 463

Query: 644 DKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDK 703
           +KE A+  HSE+LA+A+GL+ +  G  IRIVKNLR C DCH + KL+S VY+RE+I+RD+
Sbjct: 464 EKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLISEVYNREIILRDR 523

Query: 704 TRFHHFKHGSCSCKDYW 720
             FHHF+   CSC DYW
Sbjct: 524 VCFHHFRERGCSCNDYW 540



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 183/377 (48%), Gaps = 35/377 (9%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           S  G + YA  +F     P++ +WNT+I+GYS  DS  + + +Y DM    + P++YTF 
Sbjct: 12  SPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFG 71

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           F+L    + + +  G+ELH  ++K G D    + N LI  Y  CG +D A  +FD   + 
Sbjct: 72  FVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEP 131

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           D  +W+ M SGY +  Q  ET KL  EM+ + V   + T+  V+  C  L  LD+GK  H
Sbjct: 132 DSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVH 191

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
            Y+ +  +  +++L  AL  MY+ CG +  AL++F  +  +DV +W+ ++ GY   G  +
Sbjct: 192 SYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDE 251

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
            A Q FD                                M+ S I P+  T  S+L+A +
Sbjct: 252 KALQLFDA-------------------------------MKRSKIIPNCVTFTSVLSAYS 280

Query: 360 NLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTW 417
           + G +E G  + +T   + K+   I     ++D++C+ G V  A +  + M +  +   W
Sbjct: 281 HSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLW 340

Query: 418 TAMIVGLAINGHGDKSL 434
             ++   A   HG K L
Sbjct: 341 RTLLG--ACKTHGYKGL 355


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/606 (38%), Positives = 356/606 (58%), Gaps = 52/606 (8%)

Query: 135 KELHCHVLKFGFD---SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           K+LH   L+  +    +++F+   ++       +V+ A  +FD         WN +    
Sbjct: 42  KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRAC 101

Query: 192 KR-VKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
              V + +E   L+ +M ER    P   T   VL ACA +     GK+ H  + +     
Sbjct: 102 AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGG 161

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ + N L  +Y +CG +                               D+AR+ FD+MP
Sbjct: 162 DVYVNNGLIHLYGSCGCL-------------------------------DLARKVFDEMP 190

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ER  V W +MID  +R   +  AL LFREMQ S   PD +T+ S+L+ACA LG+L LG W
Sbjct: 191 ERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTW 249

Query: 370 VKTYIDKN---KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
              ++ +     V  D+ V N+LI+MYCKCG +  A++VF+ M ++D  +W AMI+G A 
Sbjct: 250 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 309

Query: 427 NGHGDKSLDMFSQML--RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           +G  +++++ F +M+  R ++ P+ VT+VG+L AC H G V++GR+YF  M   + IEP 
Sbjct: 310 HGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPA 369

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC-RVHRDAEMAEMAAKQI 543
             HYGC+VDL+ RAG++ EA++++ +MPMKP++++W +LL AC +     E++E  A+ I
Sbjct: 370 LEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 429

Query: 544 LELDPDNEA-------VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           +    DNE+        YVLL  +YA+ +RW++   +R+++ + GI+K PGCS IE+NG+
Sbjct: 430 IGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGI 489

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED--KERAVYQHSE 654
            HEF AGD SHPQTK+IY +L  +   L+ +GY+PD S+  L     D  KE ++  HSE
Sbjct: 490 SHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSE 549

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           +LA+AFGLI+  P   IRI KNLR+C DCH + KL+S V++ E+IVRD+ RFHHFK GSC
Sbjct: 550 RLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 609

Query: 715 SCKDYW 720
           SC DYW
Sbjct: 610 SCLDYW 615



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 141/495 (28%), Positives = 234/495 (47%), Gaps = 73/495 (14%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPT---VQNKLVTFCC 59
           SN S+   S    +    + ++TC  M QLKQ+H+ T++      P    +  K++    
Sbjct: 12  SNVSLGQSSCYQLDRVHATVLQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLS- 70

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKN-GVLIYLDML-KSDVRPDNYT 117
           S   D+ YA +VF  I   S  +WNT+I+  +   S K    ++Y  ML + +  PD +T
Sbjct: 71  SSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHT 130

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           FPF+LK          GK++HC ++K GF   V+V N LI  Y  CG +D+AR +FD   
Sbjct: 131 FPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMP 190

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           +  +V+WN+M     R  ++D   +LF EM+R    P   T+  VLSACA L  L +G  
Sbjct: 191 ERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTW 249

Query: 238 AHRY-VKEC--KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           AH + +++C   +  +++++N+L +MY  CG +  A ++F  ++ +D+ SW A++ G+  
Sbjct: 250 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 309

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G+ + A  +FD+M ++                  RE           N+RP+  T V +
Sbjct: 310 HGRAEEAMNFFDRMVDK------------------RE-----------NVRPNSVTFVGL 340

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           L AC + G          +++K +   D+ V +     YC    +E A            
Sbjct: 341 LIACNHRG----------FVNKGRQYFDMMVRD-----YC----IEPALE---------- 371

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
             +  ++  +A  G+  +++DM   M    + PD V +  +L AC   G   E  E  A 
Sbjct: 372 -HYGCIVDLIARAGYITEAIDMVMSM---PMKPDAVIWRSLLDACCKKGASVELSEEIAR 427

Query: 475 MTIQHGIEPNEAHYG 489
             I    E NE+  G
Sbjct: 428 NIIGTK-EDNESSNG 441


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/469 (45%), Positives = 303/469 (64%), Gaps = 3/469 (0%)

Query: 255 NALTDMYAACGEMGFALEIFGNIKNK---DVISWTAIVTGYINRGQVDMARQYFDQMPER 311
           NAL   Y A G    A  +FG+  +    DV+SWT +V G    G VD AR+ FD MPER
Sbjct: 131 NALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPER 190

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           + + W AMI GY++  RF +AL +F +M+   I  + F   S + AC   G L  G  V 
Sbjct: 191 NLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVH 250

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            +++++ +  D  +  A++DMYCKCG VE+A  VF+ +  K   +W  MI GLA++G   
Sbjct: 251 RWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCK 310

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
            ++++F +M R  + PD+VT V VL+AC HTGMV +G  YF  +  ++GIEP   HYGCM
Sbjct: 311 DAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGCM 370

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDL GRAG L+EA +VI +MPM+P+  V GAL GAC++HRD ++ E    +++ELDP N 
Sbjct: 371 VDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELDPQNS 430

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL N+ A+  +W +  ++R+++ +R + K  G S+IE++G V EF  G   H Q K
Sbjct: 431 GRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQEK 490

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           EI+  + +M   ++  GYMPD S+V  D+ EE+KE  +  HSEKLA+AFGL+ + PG T+
Sbjct: 491 EIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPGDTV 550

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI KNLR+C DCH   K +S V++RE++VRD+ RFHHFK G+CSC+DYW
Sbjct: 551 RITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 181/425 (42%), Gaps = 69/425 (16%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
            P ++PI    ++ +LKQ HSQ ++LGL + P    +L+ F   +   + YA ++    P
Sbjct: 3   APSVTPIPIT-TISELKQHHSQLVRLGLASRPEHVRRLLAFLARDPAGVPYAARLLAHHP 61

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT------------------- 117
            P   L+N +   ++ +  H     + L ML   + PD++T                   
Sbjct: 62  DPHPALFNPL---FASLPPHHAAAFLAL-MLSLPLHPDHFTLPRLLPAAPLPLAAQLHAL 117

Query: 118 ------------FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
                       F  LL  +  +   +    L       G D  V     ++   C  G 
Sbjct: 118 LLKLNFHSHAHSFNALLAAYLANGRADLASRLFGSCSSPG-DLDVVSWTTMVGGLCRLGL 176

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           VD AR +FD   + ++++WNAM SGY +  +F +  ++F +M   G+          + A
Sbjct: 177 VDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVA 236

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           C     L  G+  HR+V++  I  +  L  A+ DMY  CG +  A  +F  +  K + SW
Sbjct: 237 CTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSW 296

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
             ++ G    G                               R ++A+ LF EM+  ++ 
Sbjct: 297 NCMIGGLAVHG-------------------------------RCKDAIELFHEMEREDVA 325

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYI-DKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           PD+ T+V++LTACA+ G +  G     YI  +  ++  +     ++D++ + G +++A++
Sbjct: 326 PDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGCMVDLFGRAGLLDEAKK 385

Query: 405 VFREM 409
           V  +M
Sbjct: 386 VIDDM 390



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 75/168 (44%), Gaps = 3/168 (1%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +++H    + G+  +  +   +V   C + G ++ A  VF+ +P   +  WN MI G + 
Sbjct: 247 REVHRWVEQSGITMDEKLATAVVDMYC-KCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAV 305

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL-KFGFDSSVF 151
               K+ + ++ +M + DV PD+ T   +L        V  G     +++ ++G +  + 
Sbjct: 306 HGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKME 365

Query: 152 VQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVKQFD 198
               ++  +   G +D A+ +  D+  + D+    A+F   K  +  D
Sbjct: 366 HYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLD 413


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/545 (39%), Positives = 338/545 (62%), Gaps = 34/545 (6%)

Query: 179 DDVVTWN--AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
           DD  T++   M  GY     F+     + EM  +G+ P + T   +L AC +LK +  GK
Sbjct: 94  DDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREGK 153

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
           + H +V +  +  ++ ++N+L +MY  CGEM  +  +F  ++ K   S            
Sbjct: 154 QIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAAS------------ 201

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSIL 355
                              W++M    + +  + E L LFREM + +N++ +E  +VS L
Sbjct: 202 -------------------WSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSAL 242

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
           +ACAN GAL LG  +  ++ +N  + +I V  +L+DMY KCG ++ A  +F++M +++  
Sbjct: 243 SACANTGALNLGMSIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNL 302

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           T++AMI G A++G G+ +L MFS+M++  + PD V YV +L+AC+H+G+V EGR  F +M
Sbjct: 303 TYSAMISGFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEM 362

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535
             +  +EP   HYGC+VDLLGRAG L EALE I+++P++ N +VW + L  CRVH++ E+
Sbjct: 363 LKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEQNDVVWRSFLSQCRVHQNIEL 422

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
            ++AA+++L+L   N   Y+L+ N+Y+  + WD+    R  I  +G+K+TPG S +++ G
Sbjct: 423 GQIAAQELLKLCSHNPGDYLLISNMYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKG 482

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
             H FV+ D+SHPQ KEIY  L +M   LKF GY PD++++ L+V EE+K+  +  HS+K
Sbjct: 483 KTHRFVSQDRSHPQCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQK 542

Query: 656 LAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715
           +A+AF L+ + PG  I+I +NLRMC DCH   K +SM+Y+RE++VRD+ RFH FK G+CS
Sbjct: 543 VAIAFALLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCS 602

Query: 716 CKDYW 720
           CKDYW
Sbjct: 603 CKDYW 607



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 205/413 (49%), Gaps = 37/413 (8%)

Query: 15  QETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG---DMKYACKV 71
           +E   +  ++ C ++ + KQ+H++ IKL L  + +     V   C+  G    M YA  +
Sbjct: 30  KEQECLYLLKRCNNIDEFKQVHARFIKLSLFCSSSFSASSVLAKCAHSGWENSMNYAASI 89

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           FR I  P    + TMI+GY    S +  +  Y +M++  + PDN+T+P LLK  TR  A+
Sbjct: 90  FRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAI 149

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             GK++H HV K G ++ VFVQN+LI+ Y  CGE++++  +F+        +W++MFS  
Sbjct: 150 REGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSAC 209

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVT-IVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
             +  + E   LF EM R+  L    + +V  LSACA    L++G   H ++       N
Sbjct: 210 VGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELN 269

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           +I++ +L DMY  CG +  AL IF  ++ ++ ++++A+++G+   G+ +           
Sbjct: 270 IIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGE----------- 318

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
                                AL +F EM    + PD    VS+L AC++ G ++ G  V
Sbjct: 319 --------------------SALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRV 358

Query: 371 -KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
               + + KV+        L+D+  + G +E+A    + + + ++   W + +
Sbjct: 359 FGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEQNDVVWRSFL 411



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 131/276 (47%), Gaps = 6/276 (2%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+      +++ + KQIH    KLGL  +  VQN L+       G+M+ +  VF K+   
Sbjct: 139 LLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINM-YGRCGEMELSSTVFEKLEFK 197

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
           S   W++M      +      ++++ +M + ++++ +       L       A+  G  +
Sbjct: 198 SAASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSI 257

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H  +L+   + ++ V+ +L+  Y  CG +D A  IF    K + +T++AM SG+    + 
Sbjct: 258 HGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEG 317

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILENA 256
           +   ++F EM ++G+ P  V  V +L+AC+    +  G+R     +KE K+ P       
Sbjct: 318 ESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGC 377

Query: 257 LTDMYAACGEMGFALEIFGN--IKNKDVISWTAIVT 290
           L D+    G +  ALE   +  I+  DV+ W + ++
Sbjct: 378 LVDLLGRAGLLEEALETIQSIPIEQNDVV-WRSFLS 412



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 2/126 (1%)

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A  +FR +     F +  MI G       + +L  +++M+   I PD  TY  +L ACT 
Sbjct: 86  AASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTR 145

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
              + EG++    +  + G+E +      ++++ GR G +  +  V + +  K ++  W 
Sbjct: 146 LKAIREGKQIHGHV-FKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFK-SAASWS 203

Query: 522 ALLGAC 527
           ++  AC
Sbjct: 204 SMFSAC 209


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/692 (35%), Positives = 368/692 (53%), Gaps = 42/692 (6%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IH   +KLGL+    V N L+    S+ G +  A  +FRKI   SV  WN+MI  YSR  
Sbjct: 335 IHGMAVKLGLVHELMVCNALIDMY-SKCGCLSEAAILFRKIENKSVVSWNSMIGAYSR-- 391

Query: 95  SHKNGVLIYLDMLKSD------VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
             +  V    D+L+        +  +  T   LL     +  +   + LH + L+  F  
Sbjct: 392 --EGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQY 449

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
              + NA I+ Y  CG +  A  +F       V +WNA+  G+ +     +    + EM 
Sbjct: 450 KELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMT 509

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
           R G+LP   +IV +L AC +L  L  GK  H +V    +  N  +  +L  +Y  C +  
Sbjct: 510 RLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPF 569

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
           +                                R YF++M +++ V W AM+ GY +   
Sbjct: 570 YG-------------------------------RTYFERMGDKNSVCWNAMLSGYSQNEL 598

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             EAL+LFR+M +  + PDE  I SIL AC+ L AL LG+ V  +  KN +  D FV  +
Sbjct: 599 PNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACS 658

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           L+DMY K G +  +QR+F  +  K+  +W  MI G  ++G G+K++++F  M R+   PD
Sbjct: 659 LMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPD 718

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             T++GVL AC H G+V EG  Y A M   + +EP   HY C++D+LGRAG LNEAL  I
Sbjct: 719 RFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFI 778

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
             MP +P++ +W +LL +   + D EM E  A+++L L+ +    Y+LL N+YA   +WD
Sbjct: 779 NEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWD 838

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
             R +RQ + D  ++K  GCS IE+ G V+ F+AG+ S+P + EI    + +   +  +G
Sbjct: 839 VVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIG 898

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           Y PD S V  ++ E +K + +  HSEK+A+ FG +++  G T+RI KNLR+C DCH  AK
Sbjct: 899 YTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAK 958

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +S    RE+++RD  RFHHFK G CSC DYW
Sbjct: 959 YISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 242/504 (48%), Gaps = 46/504 (9%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDI 129
           VF ++   ++  WN ++ GY R + +   +  +L+++  ++ +PDN+TFP L+K  T   
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKC 224

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            +  GK +H   +K G    +FV NA+I+ Y  CG +D A  +FD   + ++++WN++  
Sbjct: 225 DIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIR 284

Query: 190 GYKRVKQFDETRKLFGEM--ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
           G+     + E  + F  +     G++P   T+V +L  C+   ++DVG   H    +  +
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
           V  L++ NAL DMY+ CG +  A  +F  I+NK V+SW +++  Y   G V    + FD 
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFV---FETFDL 401

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           + +    +W                      M+   +  +E TI+++L AC     L   
Sbjct: 402 LRK----MW----------------------MEEELMEVNEVTILNLLPACLEESELLSL 435

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
             +  Y  ++  +    + NA I  Y KCG +  A+ VF  M  K   +W A+I G A N
Sbjct: 436 RALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQN 495

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G   K+LD + +M R  I+PD+ + V +L AC   G++  G+E      +++G+E N   
Sbjct: 496 GDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHG-FVLRNGLEMNSF- 553

Query: 488 YGCMVDLLGRAGHLNEAL---EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
               V LL    H ++        + M  K NS+ W A+L     +     A    +Q+L
Sbjct: 554 --VAVSLLSLYFHCSKPFYGRTYFERMGDK-NSVCWNAMLSGYSQNELPNEALSLFRQML 610

Query: 545 E--LDPDNEAVYVLLCNIYAACNR 566
              L+PD  A+     +I  AC++
Sbjct: 611 SDGLEPDEIAI----ASILGACSQ 630



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 229/514 (44%), Gaps = 42/514 (8%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
           +H  K +H   +K+GL+ +  V N ++     + G +  A ++F K+P  ++  WN++I+
Sbjct: 226 IHLGKSVHGMAVKMGLIMDLFVGNAMIALY-GKCGFLDEAVELFDKMPEQNLISWNSLIR 284

Query: 89  GYSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           G+S           +  +L+S   + PD  T   LL   + +  V+ G  +H   +K G 
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR----VKQFDETRK 202
              + V NALI  Y  CG +  A  +F       VV+WN+M   Y R     + FD  RK
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           ++  ME + +    VTI+ +L AC +  +L   +  H Y          ++ NA    YA
Sbjct: 405 MW--MEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYA 462

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG + FA  +F  +  K V S                               W A+I G
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSS-------------------------------WNAVIGG 491

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           + +     +AL  + EM    I PD+F+IVS+L AC  LG L+ G+ +  ++ +N ++ +
Sbjct: 492 HAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMN 551

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
            FV  +L+ +Y  C      +  F  M  K+   W AM+ G + N   +++L +F QML 
Sbjct: 552 SFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLS 611

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             + PDE+    +L AC+    +  G+E      +++ +  +      ++D+  ++G L 
Sbjct: 612 DGLEPDEIAIASILGACSQLSALGLGKEVHC-FALKNSLMEDNFVACSLMDMYAKSGFLG 670

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
            +  +   +  K  +  W  ++    VH     A
Sbjct: 671 HSQRIFNRLNGKEVA-SWNVMITGFGVHGQGNKA 703



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 184/400 (46%), Gaps = 36/400 (9%)

Query: 14  TQETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
             E  +++ +  C     +  L+ +H  +++        + N  +    ++ G + +A  
Sbjct: 414 VNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIA-AYAKCGSLVFAEH 472

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF  +   SV  WN +I G+++       +  Y +M +  + PD+++   LL    R   
Sbjct: 473 VFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGL 532

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           +++GKE+H  VL+ G + + FV  +L+S Y  C +    R  F+     + V WNAM SG
Sbjct: 533 LQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSG 592

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y + +  +E   LF +M   G+ P  + I  +L AC++L  L +GK  H +  +  ++ +
Sbjct: 593 YSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMED 652

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
             +  +L DMYA  G +G +  IF  +  K+V SW  ++TG+   GQ +           
Sbjct: 653 NFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGN----------- 701

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EW 369
                               +A+ LF +M+ S+ +PD FT + +L AC + G +  G  +
Sbjct: 702 --------------------KAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNY 741

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
           +       K++ ++     +IDM  + G + +A     EM
Sbjct: 742 LAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEM 781



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 147/310 (47%), Gaps = 37/310 (11%)

Query: 221 LVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
           ++L  C + K++++G++    +    +   + +L   L  MY+ CG   + LE       
Sbjct: 112 MLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICG---YPLE------- 161

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
                                +R  FD++  ++   W A++ GY+R   + EA+  F E+
Sbjct: 162 ---------------------SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 340 -QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
              +  +PD FT   ++ AC     + LG+ V     K  +  D+FVGNA+I +Y KCG 
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA--SIIPDEVTYVGVL 456
           +++A  +F +M  ++  +W ++I G + NG   ++   F  +L +   +IPD  T V +L
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
             C+  G VD G      M ++ G+         ++D+  + G L+EA  + + +  K +
Sbjct: 321 PVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENK-S 378

Query: 517 SIVWGALLGA 526
            + W +++GA
Sbjct: 379 VVSWNSMIGA 388


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/719 (34%), Positives = 383/719 (53%), Gaps = 36/719 (5%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTV--QNKLVTFCCSEK 62
           +++SP S L     L    +T +++   K IHS  I     T  ++   N L+ F  ++ 
Sbjct: 22  NAVSPSSPLDLIKLLKLSADT-KNLKVGKTIHSHLIVTSRATENSIIEVNSLINFY-AKV 79

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFL 121
             +  A  +F ++P  +V  W+ ++ GY         + +  DM+ + +V P+ Y     
Sbjct: 80  NQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIA 139

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           +        VE G++ H  +LK GF    +V+NAL+S Y  C  V  A G+++    +D+
Sbjct: 140 ISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDI 199

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           V +N++ S         E  ++   M  + V    VT V   S CA LKDL +G   H  
Sbjct: 200 VAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGK 259

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           +    +  +  + +A+ +MY  CG+   A  +F  +++++V+ WTA++      G     
Sbjct: 260 MLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGC---- 315

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                      F EAL LF +M+  N++ +EFT   +L ACA L
Sbjct: 316 ---------------------------FEEALNLFSKMEQENVKSNEFTYAVLLNACAGL 348

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            A   G  +  + +K+  K+ + VGNALI+MY K GD+E A++VF +M+ +D  TW AMI
Sbjct: 349 SARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMI 408

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G + +G G K+L +F  ML A   P+ VT+ GVLSAC H G+V EG  Y   +  Q G+
Sbjct: 409 CGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGV 468

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           +P   HY C+V LL + G LNEA   ++  P+K + + W  LL AC VH++  +    A+
Sbjct: 469 QPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAE 528

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
            +LE+DP++   Y LL NIYA   RWD   ++R+++ D+ IKK PG S IE+  V H F 
Sbjct: 529 FVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFT 588

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
           + D  HP   + Y K+ E+ + +K +GY PDI  V  DV +E KE  +  HSEKLA+A+G
Sbjct: 589 SEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYG 648

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           L+      +I ++KNLR+C DCH   +L+S V +R ++VRD  RFHHF+ G CSC DYW
Sbjct: 649 LLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 195/430 (45%), Gaps = 50/430 (11%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           M S  ++SP      E  L   I +C     + + +Q H   +K G   +  V+N LV+ 
Sbjct: 123 MISEGNVSP-----NEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSM 177

Query: 58  C--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN 115
              CS   D   A  V+ ++P   +  +N+++         + G+ +   M+   V+ D 
Sbjct: 178 YSKCSIVQD---AMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDK 234

Query: 116 YTF--PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
            TF   F L    +D+    G  +H  +L    +   +V +A+I+ Y  CG+  MARG+F
Sbjct: 235 VTFVNAFSLCASLKDL--RLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVF 292

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233
           D     +VV W A+ +   +   F+E   LF +ME++ V     T  ++L+ACA L    
Sbjct: 293 DGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARR 352

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
            G   H + ++     ++++ NAL +MYA  G++  A ++F ++ ++D+I+W A++ G+ 
Sbjct: 353 NGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFS 412

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
           + G                                 ++AL +F++M  +   P+  T   
Sbjct: 413 HHGL-------------------------------GKKALLVFQDMLAAEEHPNYVTFTG 441

Query: 354 ILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LR 411
           +L+AC +LG ++ G +   ++ K   V+  +     ++ +  K G + +A+   R   ++
Sbjct: 442 VLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVK 501

Query: 412 KDKFTWTAMI 421
            D   W  ++
Sbjct: 502 WDVVAWRTLL 511


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/717 (34%), Positives = 390/717 (54%), Gaps = 50/717 (6%)

Query: 19  LISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            I+ + +C   ES+    +IH   +   L  +P V N L+     + G + +A +VF K+
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMY-KKCGSLSHAKRVFAKM 119

Query: 76  PRP-SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
            R  +V  W+ M   ++   +    +  +  ML   ++        +L   +    V+ G
Sbjct: 120 ERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG 179

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYK 192
           + +H  +   GF+S + V NA+++ Y  CG V+ AR +FD       DVV+WN M S Y 
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYV 239

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
              +  +  +L+  M+ +   P  VT V +LSAC+  +D+ +G+  H+ +   ++  N+I
Sbjct: 240 HNDRGKDAIQLYQRMQLR---PDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVI 296

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + NAL  MYA C                               G    AR  FD+M +R 
Sbjct: 297 VGNALVSMYAKC-------------------------------GSHTEARAVFDKMEQRS 325

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREM-------QTSNIRPDEFTIVSILTACANLGALE 365
            + WT +I  Y+R     EA  LF++M        +  ++PD    V+IL ACA++ ALE
Sbjct: 326 IISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALE 385

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIVGL 424
            G+ V        + +D  VG A++++Y KCG++E+A+R+F  +  R D   W AMI   
Sbjct: 386 QGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVY 445

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH-GIEP 483
           A  G   ++L +F +M    + PD  ++V +L AC+HTG+ D+G+ YF  MT ++  +  
Sbjct: 446 AQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTR 505

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              H+GC+ DLLGR G L EA E ++ +P+KP+++ W +LL ACR HRD + A+  A ++
Sbjct: 506 TIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKL 565

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           L L+P     YV L NIYA   +W    ++R+ + ++G+KK  G S IE+   +H+F  G
Sbjct: 566 LRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATG 625

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           D +HP+ +EI  +L ++ S +K  GY+PD   V   V E++KER ++ HSE+LA+A GLI
Sbjct: 626 DDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLI 685

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+  G  +R+ KNLR+C DCH   KL+S +  R+++VRD TRFH FK G CSC+DYW
Sbjct: 686 STPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 197/445 (44%), Gaps = 55/445 (12%)

Query: 16  ETPLISPIETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           ++ +++ +  C S   +   + IHS     G  +   V N ++T      G ++ A KVF
Sbjct: 160 KSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMY-GRCGAVEEARKVF 218

Query: 73  RKIPRP--SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
             +      V  WN M+  Y   D  K+ + +Y  M    +RPD  T+  LL   +    
Sbjct: 219 DAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM---QLRPDKVTYVSLLSACSSAED 275

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           V  G+ LH  ++    + +V V NAL+S Y  CG    AR +FD   +  +++W  + S 
Sbjct: 276 VGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISA 335

Query: 191 YKRVKQFDETRKLFGEM---ERKG----VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           Y R +   E   LF +M   E+ G    V P ++  V +L+ACA +  L+ GK       
Sbjct: 336 YVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAA 395

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMAR 302
            C +  +  +  A+ ++Y  CGE+  A  IF  + ++ DV  W A++  Y   GQ     
Sbjct: 396 SCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQS---- 451

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                       EAL LF  M+   +RPD F+ VSIL AC++ G
Sbjct: 452 ---------------------------HEALKLFWRMEMEGVRPDSFSFVSILLACSHTG 484

Query: 363 ALELGE--WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTA 419
             + G+  +     +   V   I     + D+  + G +++A+    ++ ++ D   WT+
Sbjct: 485 LEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTS 544

Query: 420 MIVGLAINGHGD--KSLDMFSQMLR 442
           ++   A   H D  ++ ++ +++LR
Sbjct: 545 LLA--ACRNHRDLKRAKEVANKLLR 567



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 180/399 (45%), Gaps = 39/399 (9%)

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
           Y  C     A+  FD   + ++ +W  + + +    Q  ET +    M + GV P +VT 
Sbjct: 2   YAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTF 61

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI-K 278
           +  L +C   + L  G R H+ V + ++  +  + NAL +MY  CG +  A  +F  + +
Sbjct: 62  ITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMER 121

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
            ++VISW+ +   +   G V                 W              EAL  FR 
Sbjct: 122 TRNVISWSIMAGAHALHGNV-----------------W--------------EALRHFRF 150

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M    I+  +  +V+IL+AC++   ++ G  + + I  +  ++++ V NA++ MY +CG 
Sbjct: 151 MLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGA 210

Query: 399 VEKAQRVFREM--LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           VE+A++VF  M    +D  +W  M+     N  G  ++ ++ +M    + PD+VTYV +L
Sbjct: 211 VEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM---QLRPDKVTYVSLL 267

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+    V  GR       +   +E N      +V +  + G   EA  V   M  + +
Sbjct: 268 SACSSAEDVGLGR-VLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQR-S 325

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
            I W  ++ A    R    A    +Q+LEL+ +  +  V
Sbjct: 326 IISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRV 364



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 160/325 (49%), Gaps = 14/325 (4%)

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           A+  FD + +R+   WT ++  +    + +E L     M+   +RPD  T ++ L +C +
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 70

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-KDKFTWTA 419
             +L  G  +   +  ++++ D  V NAL++MY KCG +  A+RVF +M R ++  +W+ 
Sbjct: 71  PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 130

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           M    A++G+  ++L  F  ML   I   +   V +LSAC+   +V +GR   + + +  
Sbjct: 131 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALS- 189

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           G E        ++ + GR G + EA +V   M      +V   ++ +  VH D     + 
Sbjct: 190 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQ 249

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNF---RELRQMILDRGIKKTPGCSMIEMNGV 596
             Q ++L PD     V   ++ +AC+  ++    R L + I++  ++K    ++I  N +
Sbjct: 250 LYQRMQLRPDK----VTYVSLLSACSSAEDVGLGRVLHKQIVNDELEK----NVIVGNAL 301

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMT 621
           V  + A   SH + + ++ K+++ +
Sbjct: 302 VSMY-AKCGSHTEARAVFDKMEQRS 325



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 1/139 (0%)

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY  C     A+  F  + +++ ++WT ++   AI+G   ++L    +M +  + PD VT
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           ++  L +C     + +G      M +   +E +      ++++  + G L+ A  V   M
Sbjct: 61  FITALGSCGDPESLRDGIR-IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119

Query: 512 PMKPNSIVWGALLGACRVH 530
               N I W  + GA  +H
Sbjct: 120 ERTRNVISWSIMAGAHALH 138


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/483 (45%), Positives = 310/483 (64%), Gaps = 7/483 (1%)

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIF--GNIKNKDVISWTAIVTGYINRGQVDMA 301
           +C  + + ++ N L  +Y A G +  A  +F        DV+SW  +V+GY   G ++ A
Sbjct: 109 KCGALAHPVVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAA 168

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
           R+ F +MPER  V W+AMID  +R   F EAL +F +M  +  +PD   +VS+L  CA+L
Sbjct: 169 REVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHL 228

Query: 362 GALELGEWVKTYIDKNKV---KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           GALE G WV  ++   ++     ++ +  AL+DMYCKCG + +A  VF  +   D   W 
Sbjct: 229 GALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWN 288

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           AMI GLA+NGHG ++L++F +ML    +P+E T+V  L AC HTG VDEG + F  M   
Sbjct: 289 AMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMR-D 347

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           HGIEP   HYGC+ DLLGRAG L EA  V+ +MPM+P++  WGAL+ +C +H +  + E 
Sbjct: 348 HGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGER 407

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
             K+++EL+PD+   YV L N+YA    W++ + LR+M+ +RG KK  G S IE NG+VH
Sbjct: 408 VGKKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVH 467

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQHSEKLA 657
           EF +GD  HPQT+ IY  L++M   L+ +GY+ D S+V LD+  EEDK   +  HSE+LA
Sbjct: 468 EFRSGDTRHPQTRLIYALLEDMEQRLQLIGYVKDTSQVLLDMDNEEDKGNTLSYHSERLA 527

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           +AFG+++    + IRIVKNLR+C DCH  AKLVS +Y RE+IVRD+ RFH F+ G CSC 
Sbjct: 528 LAFGILNIPHDMPIRIVKNLRVCRDCHVHAKLVSKLYQREIIVRDRHRFHLFRDGVCSCN 587

Query: 718 DYW 720
           D+W
Sbjct: 588 DFW 590



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 130/286 (45%), Gaps = 41/286 (14%)

Query: 146 FDSS------VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           FD+S      V   N ++S Y  CG+++ AR +F    +  +V+W+AM     R  +F E
Sbjct: 139 FDTSGATALDVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSE 198

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI---VPNLILENA 256
             ++F +M   G  P +V +V VL  CA L  L+ G+  HR++K  ++     N++LE A
Sbjct: 199 ALRVFDQMTGNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETA 258

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L DMY  CG M  A  +F  +++ DV+ W A++ G    G                    
Sbjct: 259 LVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGH------------------- 299

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
                        + AL LFR M      P+E T V  L AC + G ++ GE V   +  
Sbjct: 300 ------------GKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMRD 347

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
           + ++        L D+  + G +E+A+ V  +M +      W A++
Sbjct: 348 HGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALM 393



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 6/253 (2%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD++ A +VF ++P   +  W+ MI    R       + ++  M  +  +PD      +L
Sbjct: 163 GDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVL 222

Query: 123 KGFTRDIAVEFGKELHCHVLKF----GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
           K      A+E G+ +H   LK     G   +V ++ AL+  YC CG ++ A  +FD    
Sbjct: 223 KTCAHLGALERGRWVH-RFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQS 281

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            DVV WNAM  G           +LF  M  KG +P   T V+ L AC     +D G+  
Sbjct: 282 HDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDV 341

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQ 297
            R +++  I P       L D+    G +  A  +  ++  +   S W A+++  +    
Sbjct: 342 FRSMRDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNN 401

Query: 298 VDMARQYFDQMPE 310
           V +  +   ++ E
Sbjct: 402 VGVGERVGKKLIE 414


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/704 (36%), Positives = 382/704 (54%), Gaps = 42/704 (5%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           + TC  +  L   +++H   I+ G  ++  V N L+T    + GD+  A  VF ++PR  
Sbjct: 202 LRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYV-KCGDIFSARLVFDRMPRRD 260

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
              WN MI GY   D    G+ ++  M +  V PD  T   ++           G+E+H 
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHG 320

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           +V+K GF + V V N+LI  +   G  D A  +F      D+V+W AM SGY++    ++
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEK 380

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             + +  ME +GV+P  +TI  VLSACA L  LD G   H +     +   +I+ N+L D
Sbjct: 381 AVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLID 440

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY+ C  +  ALE+F  I                               P ++ + WT++
Sbjct: 441 MYSKCRCIDKALEVFHRI-------------------------------PNKNVISWTSI 469

Query: 320 IDGYLRVN-RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           I G LR+N R  EAL  F++M  S ++P+  T+VS+L+ACA +GAL  G+ +  +  +  
Sbjct: 470 ILG-LRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +  D F+ NAL+DMY +CG +E A   F     KD  +W  ++ G A  G G  ++++F 
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFH 586

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M+ + + PDE+T+  +L AC+ +GMV +G EYF  M  +  I PN  HY  +VDLLGRA
Sbjct: 587 KMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRA 646

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G L +A E IK MP+ P+  +WGALL ACR++++ E+ E+AA+ I E+D  +   Y+LLC
Sbjct: 647 GRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLC 706

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           N+YA   +WD    +R+++ +  +   PGCS +E+ G VH F+ GD  HPQ KEI   L+
Sbjct: 707 NLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLE 766

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
                ++  G          D+ +  K      HSE+LA+AFGLI++ PG  I + KNL 
Sbjct: 767 GFYEKMEATGLSMSKDSRRDDI-DASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLY 825

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD--YW 720
           MC +CH   K +S V  R + VRD  +FHHFK G CSC D  YW
Sbjct: 826 MCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 175/563 (31%), Positives = 280/563 (49%), Gaps = 57/563 (10%)

Query: 15  QETPLISPIETCE---SMHQLKQIHSQTIK----LGLLTNPTVQNKLVTFCCSEKGDMKY 67
           +E   I+ +  CE   +  +  ++HS   K    LG+     + +  V F     GD+  
Sbjct: 93  EEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRF-----GDLVE 147

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--GF 125
           A  VF K+    +  WN ++ GY++       + +Y  ML   +RPD YTFP +L+  G 
Sbjct: 148 AWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGG 207

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
             D+A   G+E+H HV+++GF+S V V NALI+ Y  CG++  AR +FD   + D ++WN
Sbjct: 208 LPDLAR--GREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWN 265

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           AM SGY       E  +LF  M    V P  +T+  V+SAC  L D  +G+  H YV + 
Sbjct: 266 AMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKT 325

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
             V  + + N+L  M+++ G    A  +F  ++ KD++SWTA+++GY   G         
Sbjct: 326 GFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNG--------- 376

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
             +PE+                    A+  +  M+   + PDE TI S+L+ACA LG L+
Sbjct: 377 --LPEK--------------------AVETYTIMEHEGVVPDEITIASVLSACAGLGLLD 414

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            G  +  + D+  + + + V N+LIDMY KC  ++KA  VF  +  K+  +WT++I+GL 
Sbjct: 415 KGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLR 474

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           +N    ++L  F QM+  S+ P+ VT V VLSAC   G +  G+E  A   ++ G+  + 
Sbjct: 475 LNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAH-ALRTGLGFDG 532

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAAKQI- 543
                ++D+  R G +  A     +      S  W  LL G  +  +     E+  K I 
Sbjct: 533 FLPNALLDMYVRCGRMEPAWNQFNSCEKDVAS--WNILLTGYAQQGKGGLAVELFHKMIE 590

Query: 544 LELDPDNEAVYVLLCNIYAACNR 566
            +++PD      LLC    AC+R
Sbjct: 591 SDVNPDEITFTSLLC----ACSR 609



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 145/470 (30%), Positives = 223/470 (47%), Gaps = 43/470 (9%)

Query: 101 LIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
           LI+LD ++   V  +  T+  LL+      A   G  +H +V K      V + NAL+S 
Sbjct: 79  LIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSM 138

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
           +   G++  A  +F    + D+ +WN +  GY +   FDE   L+  M   G+ P   T 
Sbjct: 139 FVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTF 198

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
             VL  C  L DL  G+  H +V       ++ + NAL  MY  CG              
Sbjct: 199 PCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCG-------------- 244

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
            D+ S                AR  FD+MP RD + W AMI GY   +   E L LF  M
Sbjct: 245 -DIFS----------------ARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMM 287

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
           +   + PD  T+ S+++AC  LG   LG  V  Y+ K     ++ V N+LI M+   G  
Sbjct: 288 REFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCW 347

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           ++A+ VF +M  KD  +WTAMI G   NG  +K+++ ++ M    ++PDE+T   VLSAC
Sbjct: 348 DEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSAC 407

Query: 460 THTGMVDEG--REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
              G++D+G     FAD T   G+         ++D+  +   +++ALEV   +P K N 
Sbjct: 408 AGLGLLDKGIMLHEFADRT---GLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNK-NV 463

Query: 518 IVWGALLGACRV-HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
           I W +++   R+ +R  E      + IL L P++    V L ++ +AC R
Sbjct: 464 ISWTSIILGLRLNYRSFEALFFFQQMILSLKPNS----VTLVSVLSACAR 509



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 180/418 (43%), Gaps = 45/418 (10%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV----TFCCSEKGDM 65
           P  +T  T +IS  E        +++H   IK G +   +V N L+    +  C ++ +M
Sbjct: 294 PDLMTM-TSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEM 352

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
                VF K+    +  W  MI GY +    +  V  Y  M    V PD  T   +L   
Sbjct: 353 -----VFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSAC 407

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
                ++ G  LH    + G  S V V N+LI  Y  C  +D A  +F      +V++W 
Sbjct: 408 AGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWT 467

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           ++  G +   +  E    F +M    + P SVT+V VLSACA++  L  GK  H +    
Sbjct: 468 SIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRT 526

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
            +  +  L NAL DMY  CG M  A   F N   KDV SW  ++TGY  +G+  +A + F
Sbjct: 527 GLGFDGFLPNALLDMYVRCGRMEPAWNQF-NSCEKDVASWNILLTGYAQQGKGGLAVELF 585

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
            +M E D                               + PDE T  S+L AC+  G + 
Sbjct: 586 HKMIESD-------------------------------VNPDEITFTSLLCACSRSGMVT 614

Query: 366 LG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            G E+ ++   K  +  ++    +++D+  + G +E A    ++M +  D   W A++
Sbjct: 615 DGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALL 672



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 2/198 (1%)

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             +AL     MQ   +  +E T +++L  C    A   G  V +Y+ K   +  + +GNA
Sbjct: 75  LEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNA 134

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           L+ M+ + GD+ +A  VF +M  +D F+W  ++ G A  G+ D++L+++ +ML   I PD
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             T+  VL  C     +  GRE    + I++G E +      ++ +  + G +  A  V 
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHV-IRYGFESDVDVVNALITMYVKCGDIFSARLVF 253

Query: 509 KNMPMKPNSIVWGALLGA 526
             MP + + I W A++  
Sbjct: 254 DRMPRR-DRISWNAMISG 270


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 333/555 (60%), Gaps = 39/555 (7%)

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           +  A  +F + +  +V TWN M  GY          + + +M    + P + T   +L A
Sbjct: 80  LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKA 139

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
            +K  ++  G+  H           + ++N+L  +YAACG+                   
Sbjct: 140 ISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGD------------------- 180

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                        + A   F+ M +RD V   ++I+G+    R  EALTLFREM    + 
Sbjct: 181 ------------TESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVE 228

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           PD FT+VS+L+A A LGALELG  V  Y+ K  ++ +  V N+L+D+Y KC  + + +R 
Sbjct: 229 PDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXER- 287

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
                  +  +WT++IVGLA+NG G+++L++F +M    ++P E+T+VGVL AC+H GM+
Sbjct: 288 -------NAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGML 340

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           DEG +YF  M  + GI P   HYGCMVDLL RAG + +A E I+NMP++PN++ W  LLG
Sbjct: 341 DEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLG 400

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           AC +H    + E A   +L+L+P +   YVLL N+Y +  RW + + +R+ +L  G+KKT
Sbjct: 401 ACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKT 460

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
            G S++E+   V+EF  G++SHPQ++++Y  L+++T  LK  GY+P  + V  D+ EE+K
Sbjct: 461 SGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEK 520

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           E+A+  HSEK A+AF  +++ PG TIR++KNLR+C DCH   KL++ VYDRE+++RD+ R
Sbjct: 521 EQALSYHSEKXAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGR 580

Query: 706 FHHFKHGSCSCKDYW 720
           FHHF+ GSCSCKDYW
Sbjct: 581 FHHFRGGSCSCKDYW 595



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/437 (29%), Positives = 214/437 (48%), Gaps = 59/437 (13%)

Query: 12  TLTQETPL---ISPIETC-ESMHQLKQIHSQTIKLG-LLTNPTVQNKLVTFCCSEKGDMK 66
           + T E PL   I  ++ C  S H+L+ IH+ +I+ G LL NP +   L+    S    M 
Sbjct: 11  STTPEYPLTKCIYLLQFCASSKHKLRXIHAFSIRHGVLLNNPDMGKHLIFTIVSLSAPMS 70

Query: 67  YACKVFR-----------KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN 115
           YA  VF             I  P+V  WNTM +GY+  D+    +  Y  M+ S + PD 
Sbjct: 71  YAYNVFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDT 130

Query: 116 YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV 175
           +T+PFLLK  ++ + V  G+ +H   ++ GF+S VFVQN+L+  Y  CG+ + A  +F++
Sbjct: 131 HTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFEL 190

Query: 176 SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
               D+V   ++ +G+    +  E   LF EM  +GV P   T+V +LSA A+L  L++G
Sbjct: 191 MRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELG 250

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           +R H Y+ +  +  N  + N+L D+YA C  +            ++ +SWT+++ G    
Sbjct: 251 RRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEX--------ERNAVSWTSLIVG---- 298

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFREMQTSNIRPDEFTIVSI 354
                                       L VN F  EAL LFREM+   + P E T V +
Sbjct: 299 ----------------------------LAVNGFGEEALELFREMEGQGLVPSEITFVGV 330

Query: 355 LTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRK 412
           L AC++ G L+ G ++ +   ++  +   I     ++D+  + G V++A    + M ++ 
Sbjct: 331 LYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQP 390

Query: 413 DKFTWTAMIVGLAINGH 429
           +  TW  ++    I+GH
Sbjct: 391 NAVTWRTLLGACTIHGH 407


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/508 (43%), Positives = 316/508 (62%), Gaps = 33/508 (6%)

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P S T+   L ACA +     G++ H       +  +  ++  L ++YA C         
Sbjct: 124 PNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCE-------- 175

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP-ERDYVLWTAMIDGYLRVNRFREA 332
                                  QV +AR  FD M  +++ V W+AM+ GY RV    EA
Sbjct: 176 -----------------------QVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEA 212

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L LFREMQ   + PDE T+VS+++ACA  GAL+LG+WV  YID+  +  D+ +  ALIDM
Sbjct: 213 LGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDM 272

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG +E+A+ VF  M+ KD   W+AMIVG AI+G  + +L +FS+ML   + P+ VT+
Sbjct: 273 YAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTF 332

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           +GVLSAC H+G+V++GR Y++ M    GI+P+  +YGCMVDLL R+G L++A   +  MP
Sbjct: 333 IGVLSACAHSGLVEDGRRYWSIMQ-NLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMP 391

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
           + PNS++W  LL AC+     ++AE A K++LEL+P N   YVLL N+YA+ ++WD    
Sbjct: 392 VSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSY 451

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           LR+ +  + +    G S IE+NG +HEFV  D SHP+ +EI L L EM   ++  G+ P 
Sbjct: 452 LRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPW 511

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            + V  DVGEE+KE A+ QHSE+LA+A+GL+ +     IR+VKNLR C+DCH +AK++S 
Sbjct: 512 TAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRFCLDCHEVAKIISK 571

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            Y+RE++VRD+ RFH F  GSCSCKD+W
Sbjct: 572 AYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 196/420 (46%), Gaps = 44/420 (10%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGL--LTNPTVQNKLVTFCCSEKGDMKYAC---- 69
           E  ++S +  C  +  L+  H+   +L L  LT     +KL+  C S             
Sbjct: 18  EAHIVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASS 77

Query: 70  ---KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGF 125
               +F +IP P+   +N++I+      S    + +Y  ML++   RP+++T  F LK  
Sbjct: 78  YARNLFDQIPDPTAFCYNSLIRALPAAGS-APALAVYRRMLRAGSPRPNSFTLAFALKAC 136

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD-DVVTW 184
               A   G++LH   L+ G  +S +VQ  L++ Y  C +V +AR +FD    D ++V W
Sbjct: 137 AAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAW 196

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           +AM SGY RV   +E   LF EM+  GV P  VT+V V+SACAK   LD+GK  H Y+  
Sbjct: 197 SAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDR 256

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
             I  +L L  AL DMYA CG +  A  +F  +  KD  +W+A++ G+   G V+     
Sbjct: 257 KGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE----- 311

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                                     +AL LF  M    +RP+  T + +L+ACA+ G +
Sbjct: 312 --------------------------DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLV 345

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVG 423
           E G    + +    +K  +     ++D+ C+ G ++ A      M +  +   W  ++V 
Sbjct: 346 EDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVA 405



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 149/320 (46%), Gaps = 12/320 (3%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP-RPSVCLWNTMIKGYS 91
           +Q+H+Q ++ GL T+  VQ  L+    ++   +  A  VF  +    ++  W+ M+ GYS
Sbjct: 146 RQLHAQALRQGLATSAYVQTGLLNLY-AKCEQVALARTVFDGMAGDKNLVAWSAMVSGYS 204

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           R+      + ++ +M    V PD  T   ++    +  A++ GK +H ++ + G    + 
Sbjct: 205 RVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLE 264

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           +  ALI  Y  CG ++ ARG+FD   + D   W+AM  G+      ++   LF  M    
Sbjct: 265 LSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELK 324

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V P +VT + VLSACA    ++ G+R    ++   I P++     + D+    G +  A 
Sbjct: 325 VRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAY 384

Query: 272 E-IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE------RDYVLWTAMIDGYL 324
             + G   + + + W  ++    +  ++D+A     ++ E       +YVL + +   Y 
Sbjct: 385 SFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNL---YA 441

Query: 325 RVNRFREALTLFREMQTSNI 344
             +++     L R+M+  N+
Sbjct: 442 SNSQWDRVSYLRRKMKGKNV 461



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 11/267 (4%)

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACAN 360
           R  FDQ+P+     + ++I   L       AL ++R M +  + RP+ FT+   L ACA 
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRA-LPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 138

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTA 419
           + A   G  +     +  +    +V   L+++Y KC  V  A+ VF  M   K+   W+A
Sbjct: 139 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 198

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           M+ G +  G  +++L +F +M    + PDEVT V V+SAC   G +D G+   A +  + 
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYID-RK 257

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           GI  +      ++D+  + G +  A  V   M ++ ++  W A++    +H   E A   
Sbjct: 258 GITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALGL 316

Query: 540 AKQILELD--PDNEAVYVLLCNIYAAC 564
             ++LEL   P+N    V    + +AC
Sbjct: 317 FSRMLELKVRPNN----VTFIGVLSAC 339


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/709 (34%), Positives = 377/709 (53%), Gaps = 41/709 (5%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            +S +  C S   L   + IH   ++ GL     V + LV+      G ++ A  +F  +
Sbjct: 131 FVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMY-GRCGSLRDANALFGHL 189

Query: 76  PRP-SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
            R   V LWN MI   S+  S +  + I+  ML+  + PD  TF  + K  +   ++   
Sbjct: 190 ERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRAS 249

Query: 135 --KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
             K  H  + + G  S V V  AL++ Y  CGE+D AR  F    + + V+W +M + + 
Sbjct: 250 QVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFT 309

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           ++       + F  M  +GV+PT  T+   L  C   +DL V +      +E  +V ++ 
Sbjct: 310 QIGHLLAV-ETFHAMLLEGVVPTRSTLFAALEGC---EDLRVARLVEAIAQEIGVVTDVA 365

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +   L   YA C     A+ +F                          AR+      E D
Sbjct: 366 IVTDLVMAYARCDGQEDAIRVFS-------------------------AREE----GEWD 396

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
             L TAMI  Y +    R    L+       I PD    ++ L ACA+L AL  G  +  
Sbjct: 397 AALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHA 456

Query: 373 YIDKNK-VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            +  ++ +  D+ +GNA++ MY +CG +  A+  F  M  +D+ +W AM+   A +G  +
Sbjct: 457 CVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVE 516

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
              D+F  ML+     + + ++ +LSAC H G+V  G E+F+ MT  HG+ P   HYGCM
Sbjct: 517 DCCDLFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGCEHFSAMTGDHGVVPATEHYGCM 576

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGR G L +A  +++ MP+ P++  W AL+GACR++ D E    AA+++LEL  D+ 
Sbjct: 577 VDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRADHT 636

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
           A YV LCNIY+A  RWD+   +R+++ D G++K PG S IE+   VHEFV  D+SHPQ++
Sbjct: 637 AAYVALCNIYSAAGRWDDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSE 696

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            IY +L+ +   ++  GY     EV  DV EE KE+ +  HSEKLA+AFG++S+  G T+
Sbjct: 697 AIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTL 756

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R++KNLR+CVDCH  +K +S V+ RE++VRD  RFHHFK G+CSC DYW
Sbjct: 757 RVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 123/507 (24%), Positives = 207/507 (40%), Gaps = 43/507 (8%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A  VF KI   S+ LW  +I  Y         + ++  +L+  +  D   F  +L
Sbjct: 76  GSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVL 135

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDV 181
              + +  +  G+ +H   ++ G      V +AL+S Y  CG +  A  +F  +    DV
Sbjct: 136 SACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDV 195

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG--KRAH 239
           V WNAM +   +     E  ++F  M + G+ P  VT V V  AC+    L     K  H
Sbjct: 196 VLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFH 255

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
             + E  +  ++++  AL + YA CGE+  A + F  +  ++ +SWT+++  +   G + 
Sbjct: 256 ACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHL- 314

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
                                           A+  F  M    + P   T+ + L  C 
Sbjct: 315 -------------------------------LAVETFHAMLLEGVVPTRSTLFAALEGCE 343

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF--REMLRKDKFTW 417
           +L    L E +   I    V  D+ +   L+  Y +C   E A RVF  RE    D    
Sbjct: 344 DLRVARLVEAIAQEIG---VVTDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALV 400

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           TAMI   A       +  ++   +   I PD + Y+  L AC     + EGR+  A +  
Sbjct: 401 TAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAA 460

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
              ++ +      +V + G+ G L +A +    MP + + I W A+L A   H   E   
Sbjct: 461 DRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPAR-DEISWNAMLSASAQHGRVEDCC 519

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAAC 564
              + +L+   D E +  L  N+ +AC
Sbjct: 520 DLFRAMLQEGFDAERIAFL--NLLSAC 544



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 7/193 (3%)

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D ++ ++L+ MY +CG +E A  VF ++  K    WT +I      GH   ++ +F ++
Sbjct: 60  RDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRI 119

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           L+  I  D + +V VLSAC+    +  GR       ++ G+   E     +V + GR G 
Sbjct: 120 LQEGIALDAIVFVSVLSACSSEEFLAAGR-LIHRCAVEAGLGLQEIVASALVSMYGRCGS 178

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD--PDNEAVYVLLC 558
           L +A  +  ++    + ++W A++ A   +     A     ++L+L   PD     V   
Sbjct: 179 LRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPD----LVTFV 234

Query: 559 NIYAACNRWDNFR 571
           +++ AC+   + R
Sbjct: 235 SVFKACSSSPSLR 247


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/603 (38%), Positives = 339/603 (56%), Gaps = 42/603 (6%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           IS +  C S++Q+KQIH+Q +K  L     V  KL+    S    M  A  VF +I  P 
Sbjct: 21  ISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIA-AFSLCRQMTLAVNVFNQIQDPD 79

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           V L+NT+I+ + R         ++ +M  S V  DN+T+PFLLK  +  + V   + +H 
Sbjct: 80  VLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHA 139

Query: 140 HVLKFGFDSSVFVQNALISTYCLCG--EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
            V K GF   +FV N+LI +Y  CG   V  AR +F+V  + D V+WN+M  G  +V + 
Sbjct: 140 QVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGEL 199

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
            E R+LF EM  +                                       + +  N +
Sbjct: 200 GEARRLFDEMPER---------------------------------------DTVSWNTI 220

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            D Y   GEM  A E+F  +  ++V+SW+ +V GY   G +DMAR  FD+MP ++ V WT
Sbjct: 221 LDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWT 280

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
            MI GY      ++A+ L+ +M+ + ++ D+ T++SIL+ACA  G L LG+ V   I++ 
Sbjct: 281 IMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERT 340

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
           + K    V NALIDMY KCG +E A  +F  M+RKD  +W A+I GLA++GHG+K+L +F
Sbjct: 341 RFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLF 400

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           S+M     +PD+VT+VGVL ACTH G VDEG  YF  M   +G+ P   HYGCMVDLLGR
Sbjct: 401 SRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGR 460

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
            G L EA  ++ +MP++PN+I+WG LLGACR+H    +AE    ++++ +  +     +L
Sbjct: 461 GGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSML 520

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            NIYAA   WDNF  +R  +    I+K  G S IE++  VHEF   D+SHP++  IY  +
Sbjct: 521 SNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTI 580

Query: 618 DEM 620
           D +
Sbjct: 581 DGL 583


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/607 (37%), Positives = 333/607 (54%), Gaps = 42/607 (6%)

Query: 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
           L+  Y    +V  AR +FD   + +V+  N M   Y     + E  K+FG M    V P 
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
             T   VL AC+    + +G++ H    +  +   L + N L  MY  CG +  A  +  
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMA---------------------------------- 301
            +  +DV+SW ++V GY    + D A                                  
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 302 ---RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
              +  F +M ++  V W  MI  Y++     EA+ L+  M+     PD  +I S+L AC
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
            +  AL LG+ +  YI++ K+  ++ + NALIDMY KCG +EKA+ VF  M  +D  +WT
Sbjct: 320 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           AMI     +G G  ++ +FS++  + ++PD + +V  L+AC+H G+++EGR  F  MT  
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           + I P   H  CMVDLLGRAG + EA   I++M M+PN  VWGALLGACRVH D ++  +
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           AA ++ +L P+    YVLL NIYA   RW+    +R ++  +G+KK PG S +E+N ++H
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
            F+ GD+SHPQ+ EIY +LD +   +K +GY+PD      DV EEDKE  +  HSEKLA+
Sbjct: 560 TFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAI 619

Query: 659 AFGLISS-----GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
            F L+++         TIRI KNLR+C DCH  AKL+S +  RE+I+RD  RFH F+ G 
Sbjct: 620 VFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGV 679

Query: 714 CSCKDYW 720
           CSC DYW
Sbjct: 680 CSCGDYW 686



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 239/498 (47%), Gaps = 48/498 (9%)

Query: 5   SSISPPSTLTQETP------LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC 58
           SS  P   L Q++P      L   ++T   +  L+ +HS+ I   L  N ++  KL+   
Sbjct: 25  SSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAY 84

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
            S K D+  A KVF +IP  +V + N MI+ Y     +  GV ++  M   +VRPD+YTF
Sbjct: 85  ASLK-DVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTF 143

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
           P +LK  +    +  G+++H    K G  S++FV N L+S Y  CG +  AR + D   +
Sbjct: 144 PCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSR 203

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK--------LK 230
            DVV+WN++  GY + ++FD+  ++  EME   +   + T+  +L A +         +K
Sbjct: 204 RDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVK 263

Query: 231 DL--DVGKRA--------HRYVKECKIVPNLILEN------------ALTDMYAACGE-- 266
           D+   +GK++          Y+K    V  + L +            ++T +  ACG+  
Sbjct: 264 DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTS 323

Query: 267 -MGFALEIFGNIKNKDVIS----WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
            +    +I G I+ K +I       A++  Y   G ++ AR  F+ M  RD V WTAMI 
Sbjct: 324 ALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMIS 383

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVK 380
            Y    R  +A+ LF ++Q S + PD    V+ L AC++ G LE G    K   D  K+ 
Sbjct: 384 AYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 443

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
             +     ++D+  + G V++A R  ++M +  ++  W A++    +  H D  + + + 
Sbjct: 444 PRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRV--HSDTDIGLLAA 501

Query: 440 MLRASIIPDEVTYVGVLS 457
                + P++  Y  +LS
Sbjct: 502 DKLFQLAPEQSGYYVLLS 519



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           +G  L+  Y    DV  A++VF E+  ++      MI     NG   + + +F  M   +
Sbjct: 76  LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           + PD  T+  VL AC+ +G +  GR+     T + G+         +V + G+ G L+EA
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSAT-KVGLSSTLFVGNGLVSMYGKCGFLSEA 194

Query: 505 LEVIKNMPMKPNSIVWGALL 524
             V+  M  + + + W +L+
Sbjct: 195 RLVLDEMSRR-DVVSWNSLV 213


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/558 (41%), Positives = 337/558 (60%), Gaps = 38/558 (6%)

Query: 169 ARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETRK----LFGEMERKGVLPTSVTIVLVL 223
           AR +FD + +  DVV +N +  GY R        +    +F  M  +GV P + T V +L
Sbjct: 86  ARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            ACA  +  + G++AH    +     +  +   L +MYA CG+                 
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGD----------------- 188

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
                         V  AR  FD+M     V + AMI   +R +   EAL LFREMQ   
Sbjct: 189 --------------VRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKG 234

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           ++P   T++S+L+ACA LGALELG W+  YI K ++ + + V  ALIDMY KCG +E A 
Sbjct: 235 LKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAI 294

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
            VF++M  +DK  W+ M+V  A +G+G +++ MF +M +  + PD+VT++GVL AC+H+G
Sbjct: 295 GVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSG 354

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
           MV EG +YF  M  ++GI     HYGC+ DLL R+G L  A + I  +P+KP +I+W  L
Sbjct: 355 MVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTL 413

Query: 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           L AC  H D +M +   ++ILELD  +   YV+  N+ A   RW+    +R+++ ++G+ 
Sbjct: 414 LSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVV 473

Query: 584 KTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF-LDVGE 642
           K PGCS IE++ +VHEF AGD SHP ++E    +DE+   LK VGY+P+ S VF +++GE
Sbjct: 474 KVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGE 533

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E+K  ++  HSEKLA++FGL+++ PG T+RIVKNLR+C DCH MAKLVSMV++R +I+RD
Sbjct: 534 EEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRD 593

Query: 703 KTRFHHFKHGSCSCKDYW 720
             RFHHF+ G CSC DYW
Sbjct: 594 LNRFHHFEDGVCSCGDYW 611



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 230/464 (49%), Gaps = 50/464 (10%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLG--LLTNPTVQNKLVTFCCSEKGD----MKYACKVF 72
           L++ +  C S+  L Q+H+  +K G  L  +P    +L+T C  +  +    + YA +VF
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVF 90

Query: 73  RKIPRPSVCLW-NTMIKGYSRIDSHKNGVL----IYLDMLKSDVRPDNYTFPFLLKGFTR 127
            +IP P   +W NT+++GY+R      G      +++ M++  V PD YTF  LLK    
Sbjct: 91  DRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACAS 150

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             A E G++ H   +K G     +V   LI+ Y  CG+V  AR +FD    + VV++NAM
Sbjct: 151 ARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAM 210

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            +   R     E   LF EM+ KG+ PTSVT++ VLSACA L  L++G+  H Y+++ ++
Sbjct: 211 ITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRL 270

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
              + +  AL DMYA CG +  A+ +F +++++D  +W+ ++  Y N G           
Sbjct: 271 DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGY---------- 320

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                 REA+++F EM+   ++PD+ T + +L AC++ G +  G
Sbjct: 321 ---------------------GREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEG 359

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAI 426
                 + +  + + I     + D+  + G +E+A +   E+ ++     W  ++   A 
Sbjct: 360 LQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACA- 418

Query: 427 NGHGDKSLDMFSQMLRASIIPDEV---TYVGVLSACTHTGMVDE 467
            GHGD  +DM  ++    +  D+     YV   + C +TG  +E
Sbjct: 419 -GHGD--VDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEE 459


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/508 (43%), Positives = 316/508 (62%), Gaps = 33/508 (6%)

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P S T+   L ACA +     G++ H       +  +  ++  L ++YA C         
Sbjct: 173 PNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCE-------- 224

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP-ERDYVLWTAMIDGYLRVNRFREA 332
                                  QV +AR  FD M  +++ V W+AM+ GY RV    EA
Sbjct: 225 -----------------------QVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEA 261

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L LFREMQ   + PDE T+VS+++ACA  GAL+LG+WV  YID+  +  D+ +  ALIDM
Sbjct: 262 LGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDM 321

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG +E+A+ VF  M+ KD   W+AMIVG AI+G  + +L +FS+ML   + P+ VT+
Sbjct: 322 YAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTF 381

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           +GVLSAC H+G+V++GR Y++ M    GI+P+  +YGCMVDLL R+G L++A   +  MP
Sbjct: 382 IGVLSACAHSGLVEDGRRYWSIMQ-NLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMP 440

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
           + PNS++W  LL AC+     ++AE A K++LEL+P N   YVLL N+YA+ ++WD    
Sbjct: 441 VSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSY 500

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           LR+ +  + +    G S IE+NG +HEFV  D SHP+ +EI L L EM   ++  G+ P 
Sbjct: 501 LRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPW 560

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            + V  DVGEE+KE A+ QHSE+LA+A+GL+ +     IR+VKNLR C+DCH +AK++S 
Sbjct: 561 TAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRFCLDCHEVAKIISK 620

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            Y+RE++VRD+ RFH F  GSCSCKD+W
Sbjct: 621 AYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 196/420 (46%), Gaps = 44/420 (10%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGL--LTNPTVQNKLVTFCCSEKGDMKYAC---- 69
           E  ++S +  C  +  L+  H+   +L L  LT     +KL+  C S             
Sbjct: 67  EAHIVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASS 126

Query: 70  ---KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGF 125
               +F +IP P+   +N++I+      S    + +Y  ML++   RP+++T  F LK  
Sbjct: 127 YARNLFDQIPDPTAFCYNSLIRALPAAGS-APALAVYRRMLRAGSPRPNSFTLAFALKAC 185

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD-DVVTW 184
               A   G++LH   L+ G  +S +VQ  L++ Y  C +V +AR +FD    D ++V W
Sbjct: 186 AAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAW 245

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           +AM SGY RV   +E   LF EM+  GV P  VT+V V+SACAK   LD+GK  H Y+  
Sbjct: 246 SAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDR 305

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
             I  +L L  AL DMYA CG +  A  +F  +  KD  +W+A++ G+   G V+     
Sbjct: 306 KGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE----- 360

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                                     +AL LF  M    +RP+  T + +L+ACA+ G +
Sbjct: 361 --------------------------DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLV 394

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVG 423
           E G    + +    +K  +     ++D+ C+ G ++ A      M +  +   W  ++V 
Sbjct: 395 EDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVA 454



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 149/320 (46%), Gaps = 12/320 (3%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP-RPSVCLWNTMIKGYS 91
           +Q+H+Q ++ GL T+  VQ  L+    ++   +  A  VF  +    ++  W+ M+ GYS
Sbjct: 195 RQLHAQALRQGLATSAYVQTGLLNLY-AKCEQVALARTVFDGMAGDKNLVAWSAMVSGYS 253

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           R+      + ++ +M    V PD  T   ++    +  A++ GK +H ++ + G    + 
Sbjct: 254 RVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLE 313

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           +  ALI  Y  CG ++ ARG+FD   + D   W+AM  G+      ++   LF  M    
Sbjct: 314 LSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELK 373

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V P +VT + VLSACA    ++ G+R    ++   I P++     + D+    G +  A 
Sbjct: 374 VRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAY 433

Query: 272 E-IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE------RDYVLWTAMIDGYL 324
             + G   + + + W  ++    +  ++D+A     ++ E       +YVL + +   Y 
Sbjct: 434 SFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNL---YA 490

Query: 325 RVNRFREALTLFREMQTSNI 344
             +++     L R+M+  N+
Sbjct: 491 SNSQWDRVSYLRRKMKGKNV 510



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 11/267 (4%)

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACAN 360
           R  FDQ+P+     + ++I   L       AL ++R M +  + RP+ FT+   L ACA 
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRA-LPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 187

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTA 419
           + A   G  +     +  +    +V   L+++Y KC  V  A+ VF  M   K+   W+A
Sbjct: 188 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 247

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           M+ G +  G  +++L +F +M    + PDEVT V V+SAC   G +D G+   A +  + 
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYID-RK 306

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           GI  +      ++D+  + G +  A  V   M ++ ++  W A++    +H   E A   
Sbjct: 307 GITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALGL 365

Query: 540 AKQILELD--PDNEAVYVLLCNIYAAC 564
             ++LEL   P+N    V    + +AC
Sbjct: 366 FSRMLELKVRPNN----VTFIGVLSAC 388


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/692 (35%), Positives = 367/692 (53%), Gaps = 42/692 (6%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           IH   +KLGL+    V N L+    S+ G +  A  +FRKI   SV  WN+MI  YSR  
Sbjct: 335 IHGMAVKLGLVHELMVCNALIDMY-SKCGCLSEAAILFRKIENKSVVSWNSMIGAYSR-- 391

Query: 95  SHKNGVLIYLDMLKSD------VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
             +  V    D+L+        +  +  T   LL     +  +   + LH + L+  F  
Sbjct: 392 --EGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQY 449

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
              + NA I+ Y  CG +  A  +F       V +WNA+  G+ +     +    + EM 
Sbjct: 450 KELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMT 509

Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
           R G+LP   +IV +L AC +L  L  GK  H +V    +  N  +  +L  +Y  C +  
Sbjct: 510 RLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPF 569

Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
           +                                R YF+ M +++ V W AM+ GY +   
Sbjct: 570 YG-------------------------------RTYFETMGDKNSVCWNAMLSGYSQNEL 598

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             EAL+LFR+M +  + PDE  I SIL AC+ L AL LG+ V  +  KN +  D FV  +
Sbjct: 599 PNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACS 658

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           L+DMY K G +  +QR+F  +  K+  +W  MI G  ++G G+K++++F  M R+   PD
Sbjct: 659 LMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPD 718

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             T++GVL AC H G+V EG  Y A M   + +EP   HY C++D+LGRAG LNEAL  I
Sbjct: 719 RFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFI 778

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
             MP +P++ +W +LL +   + D EM E  A+++L L+ +    Y+LL N+YA   +WD
Sbjct: 779 NEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWD 838

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
             R +RQ + D  ++K  GCS IE+ G V+ F+AG+ S+P + EI    + +   +  +G
Sbjct: 839 VVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIG 898

Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
           Y PD S V  ++ E +K + +  HSEK+A+ FG +++  G T+RI KNLR+C DCH  AK
Sbjct: 899 YTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAK 958

Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +S    RE+++RD  RFHHFK G CSC DYW
Sbjct: 959 YISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 242/504 (48%), Gaps = 46/504 (9%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDI 129
           VF ++   ++  WN ++ GY R + +   +  +L+++  ++ +PDN+TFP L+K  T   
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKC 224

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            +  GK +H   +K G    +FV NA+I+ Y  CG +D A  +FD   + ++++WN++  
Sbjct: 225 DIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIR 284

Query: 190 GYKRVKQFDETRKLFGEM--ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
           G+     + E  + F  +     G++P   T+V +L  C+   ++DVG   H    +  +
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
           V  L++ NAL DMY+ CG +  A  +F  I+NK V+SW +++  Y   G V    + FD 
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFV---FETFDL 401

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           + +    +W                      M+   +  +E TI+++L AC     L   
Sbjct: 402 LRK----MW----------------------MEEELMEVNEVTILNLLPACLEESELLSL 435

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
             +  Y  ++  +    + NA I  Y KCG +  A+ VF  M  K   +W A+I G A N
Sbjct: 436 RALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQN 495

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G   K+LD + +M R  I+PD+ + V +L AC   G++  G+E      +++G+E N   
Sbjct: 496 GDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHG-FVLRNGLEMNSF- 553

Query: 488 YGCMVDLLGRAGHLNEAL---EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
               V LL    H ++        + M  K NS+ W A+L     +     A    +Q+L
Sbjct: 554 --VAVSLLSLYFHCSKPFYGRTYFETMGDK-NSVCWNAMLSGYSQNELPNEALSLFRQML 610

Query: 545 E--LDPDNEAVYVLLCNIYAACNR 566
              L+PD  A+     +I  AC++
Sbjct: 611 SDGLEPDEIAI----ASILGACSQ 630



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 229/514 (44%), Gaps = 42/514 (8%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
           +H  K +H   +K+GL+ +  V N ++     + G +  A ++F K+P  ++  WN++I+
Sbjct: 226 IHLGKSVHGMAVKMGLIMDLFVGNAMIALY-GKCGFLDEAVELFDKMPEQNLISWNSLIR 284

Query: 89  GYSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           G+S           +  +L+S   + PD  T   LL   + +  V+ G  +H   +K G 
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR----VKQFDETRK 202
              + V NALI  Y  CG +  A  +F       VV+WN+M   Y R     + FD  RK
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           ++  ME + +    VTI+ +L AC +  +L   +  H Y          ++ NA    YA
Sbjct: 405 MW--MEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYA 462

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG + FA  +F  +  K V S                               W A+I G
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSS-------------------------------WNAVIGG 491

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           + +     +AL  + EM    I PD+F+IVS+L AC  LG L+ G+ +  ++ +N ++ +
Sbjct: 492 HAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMN 551

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
            FV  +L+ +Y  C      +  F  M  K+   W AM+ G + N   +++L +F QML 
Sbjct: 552 SFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLS 611

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             + PDE+    +L AC+    +  G+E      +++ +  +      ++D+  ++G L 
Sbjct: 612 DGLEPDEIAIASILGACSQLSALGLGKEVHC-FALKNSLMEDNFVACSLMDMYAKSGFLG 670

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
            +  +   +  K  +  W  ++    VH     A
Sbjct: 671 HSQRIFNRLNGKEVA-SWNVMITGFGVHGQGNKA 703



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 184/400 (46%), Gaps = 36/400 (9%)

Query: 14  TQETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
             E  +++ +  C     +  L+ +H  +++        + N  +    ++ G + +A  
Sbjct: 414 VNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIA-AYAKCGSLVFAEH 472

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF  +   SV  WN +I G+++       +  Y +M +  + PD+++   LL    R   
Sbjct: 473 VFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGL 532

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           +++GKE+H  VL+ G + + FV  +L+S Y  C +    R  F+     + V WNAM SG
Sbjct: 533 LQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSG 592

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y + +  +E   LF +M   G+ P  + I  +L AC++L  L +GK  H +  +  ++ +
Sbjct: 593 YSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMED 652

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
             +  +L DMYA  G +G +  IF  +  K+V SW  ++TG+   GQ +           
Sbjct: 653 NFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGN----------- 701

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EW 369
                               +A+ LF +M+ S+ +PD FT + +L AC + G +  G  +
Sbjct: 702 --------------------KAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNY 741

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
           +       K++ ++     +IDM  + G + +A     EM
Sbjct: 742 LAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEM 781



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 147/310 (47%), Gaps = 37/310 (11%)

Query: 221 LVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
           ++L  C + K++++G++    +    +   + +L   L  MY+ CG   + LE       
Sbjct: 112 MLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICG---YPLE------- 161

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
                                +R  FD++  ++   W A++ GY+R   + EA+  F E+
Sbjct: 162 ---------------------SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 340 -QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
              +  +PD FT   ++ AC     + LG+ V     K  +  D+FVGNA+I +Y KCG 
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA--SIIPDEVTYVGVL 456
           +++A  +F +M  ++  +W ++I G + NG   ++   F  +L +   +IPD  T V +L
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
             C+  G VD G      M ++ G+         ++D+  + G L+EA  + + +  K +
Sbjct: 321 PVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENK-S 378

Query: 517 SIVWGALLGA 526
            + W +++GA
Sbjct: 379 VVSWNSMIGA 388


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/622 (36%), Positives = 364/622 (58%), Gaps = 37/622 (5%)

Query: 104 LDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           LD++ +  + PD   +  LLK  T    ++ GK +H H++   F + + ++N+++  Y  
Sbjct: 79  LDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAK 138

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKR---VKQFDETRKLFGEMERKGVLPTSVTI 219
           CG +++AR +FD     DVVTW +M +GY +            LF EM R G+ P    +
Sbjct: 139 CGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFAL 198

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
             ++  C  L     GK+ H    +     N+ + ++L DMYA CGE+            
Sbjct: 199 SSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGEL------------ 246

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
                                +R  FD++  ++ V W A+I G+ R     EAL LF +M
Sbjct: 247 -------------------RESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKM 287

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
           Q       EFT  ++L + +  G+LE G+W+  ++ K+  K   +VGN L+ MY K G++
Sbjct: 288 QREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNI 347

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM-LRASIIPDEVTYVGVLSA 458
             A++VF  +++ D  +  +M++G A +G G +++++F +M L   I P+++T++ VL+A
Sbjct: 348 CDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTA 407

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C+H G++DEG  YF ++  ++G+EP  +HY  +VDL GRAG L++A   I+ MP++PN+ 
Sbjct: 408 CSHAGLLDEGLYYF-ELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNAT 466

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           +WGALLGA ++H++ EM   AA+++LELDP     + LL NIYA+  +W +  ++R+ + 
Sbjct: 467 IWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMK 526

Query: 579 DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL 638
           D G+KK P CS +E+   VH F A D SHPQ  ++Y   + +   +K +GY+PD S V +
Sbjct: 527 DSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHV 586

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
            V +++KE  +  HSEKLA+AF L+++ PG  IRI+KN+R+C DCH   K VS+V  RE+
Sbjct: 587 FVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREI 646

Query: 699 IVRDKTRFHHFKHGSCSCKDYW 720
           IVRD  RFHHF+ GSCSC+DYW
Sbjct: 647 IVRDTNRFHHFRDGSCSCRDYW 668



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 207/430 (48%), Gaps = 47/430 (10%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTF 57
           + +N S+ P  T+  +      ++ C  + +LKQ   +H+  +      +  ++N ++ F
Sbjct: 81  LINNGSLEPDRTIYNKL-----LKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSIL-F 134

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR---IDSHKNGVLIYLDMLKSDVRPD 114
             ++ G ++ A +VF ++    V  W +MI GYS+     S    ++++L+M++  +RP+
Sbjct: 135 MYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPN 194

Query: 115 NYTFPFLLK--GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
            +    L+K  GF        GK++H    K+GF  +VFV ++L+  Y  CGE+  +R +
Sbjct: 195 EFALSSLVKCCGFLGSCVD--GKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLV 252

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           FD     + V+WNA+ SG+ R  + +E   LF +M+R+G   T  T   +L + +    L
Sbjct: 253 FDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSL 312

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
           + GK  H ++ +        + N L  MYA  G +  A ++F  +   DV+S  +++ GY
Sbjct: 313 EQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGY 372

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
              G    A + F++M     +LW                           I P++ T +
Sbjct: 373 AQHGLGKEAVELFEEM-----MLWV-------------------------EIEPNDITFL 402

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LR 411
           S+LTAC++ G L+ G +    + K  ++  +     ++D++ + G +++A+    EM + 
Sbjct: 403 SVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIE 462

Query: 412 KDKFTWTAMI 421
            +   W A++
Sbjct: 463 PNATIWGALL 472



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 161/378 (42%), Gaps = 48/378 (12%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQIH    K G   N  V + LV    +  G+++ +  VF ++   +   WN +I G++R
Sbjct: 215 KQIHGCCWKYGFQENVFVGSSLVDMY-ARCGELRESRLVFDELESKNEVSWNALISGFAR 273

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               +  + +++ M +       +T+  LL   +   ++E GK LH H++K G     +V
Sbjct: 274 KGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYV 333

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER-KG 211
            N L+  Y   G +  A+ +FD   K DVV+ N+M  GY +     E  +LF EM     
Sbjct: 334 GNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVE 393

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           + P  +T + VL+AC+    LD G      +K+  + P L     + D++   G +    
Sbjct: 394 IEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLL---- 449

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP-ERDYVLWTAMIDGYLRVNRFR 330
                                      D A+ + ++MP E +  +W A++ G  ++++  
Sbjct: 450 ---------------------------DQAKSFIEEMPIEPNATIWGALL-GASKMHKNT 481

Query: 331 E--ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           E  A    + ++     P   T++S + A A       G+W     D  KV+ ++     
Sbjct: 482 EMGAYAAQKVLELDPFYPGAHTLLSNIYASA-------GQWK----DVAKVRKEMKDSGL 530

Query: 389 LIDMYCKCGDVEKAQRVF 406
             +  C   ++E +  +F
Sbjct: 531 KKEPACSWVEIENSVHIF 548


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/624 (36%), Positives = 349/624 (55%), Gaps = 33/624 (5%)

Query: 98  NGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
           + VL  LD+L + ++ P    +   +    +   +E  +++H H+    F    F+ N+L
Sbjct: 33  SAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSL 92

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           I  YC CG V  AR +FD   + D+V+W ++ +GY +    +E   L   M +    P  
Sbjct: 93  IHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNG 152

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T   +L A     D  +G++ H    +C    ++ + +AL DMYA CG M         
Sbjct: 153 FTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMM--------- 203

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
                                 DMA   FD++  ++ V W A+I G+ R      AL  F
Sbjct: 204 ----------------------DMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTF 241

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
            EM  +      FT  S+ ++ A LGALE G+WV  ++ K++ K   F GN L+DMY K 
Sbjct: 242 AEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKS 301

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G +  A++VF  +  KD  TW  M+   A  G G +++  F +M ++ I  ++VT++ +L
Sbjct: 302 GSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCIL 361

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           +AC+H G+V EG+ YF +M  ++ +EP   H+  +V LLGRAG LN AL  I  MP++P 
Sbjct: 362 TACSHGGLVKEGKRYF-EMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPT 420

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           + VWGALL ACR+H++A++ + AA  + ELDPD+    VLL NIYA+  +WD    +R++
Sbjct: 421 AAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRI 480

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           +   G+KK P CS +EM   VH FVA D +HP+ +EIY    +++  ++  GY+PD+  V
Sbjct: 481 MKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYV 540

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
            L V ++++E  +  HSEKLA+AF LI    G TIRI+KN+R+C DCH   K +S V+ R
Sbjct: 541 LLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGR 600

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           E++VRD  RFHHF +GSCSC DYW
Sbjct: 601 EIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 162/350 (46%), Gaps = 32/350 (9%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            I+     +++   +++H+         +  + N L+   C + G +  A KVF ++ R 
Sbjct: 57  FITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYC-KCGSVLEARKVFDEMRRK 115

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            +  W ++I GY++ D  +  + +   MLK   +P+ +TF  LLK          G+++H
Sbjct: 116 DMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIH 175

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
              +K  +   V+V +AL+  Y  CG +DMA  +FD     + V+WNA+ SG+ R    +
Sbjct: 176 ALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGE 235

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
                F EM R G   T  T   V S+ A+L  L+ GK  H ++ + +        N L 
Sbjct: 236 TALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLL 295

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA  G M  A ++F  + +KD+++W  ++T +   G                      
Sbjct: 296 DMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLG-------------------- 335

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
                      +EA++ F EM+ S I  ++ T + ILTAC++ G ++ G+
Sbjct: 336 -----------KEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGK 374


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/698 (35%), Positives = 380/698 (54%), Gaps = 45/698 (6%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           + IH+     GL     + N L+   C + G + +A  VF          WN++I GY R
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYC-KCGRIDWARLVFESADELDSVSWNSLIAGYVR 119

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--GFTRDIAVEFGKELHCHVLKFGFDSSV 150
           I S+   + + + ML+  +  ++Y     LK  G     ++E GK LH   +K G D  V
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF-----DETRKLFG 205
            V  AL+ TY   G+++ A  IF +    +VV +NAM +G+ +++       +E   LF 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           EM+ +G+ P+  T   +L AC+ ++  + GK+ H  + +  +  +  + NAL ++Y+   
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSL-- 297

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
                                         G ++   + F   P+ D V WT++I G+++
Sbjct: 298 -----------------------------SGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQ 328

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
             +F   LTLF E+  S  +PDEFTI  +L+ACANL A++ GE +  Y  K  + N   +
Sbjct: 329 NGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTII 388

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            N+ I MY KCGD++ A   F+E    D  +W+ MI   A +G   +++D+F  M  + I
Sbjct: 389 QNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGI 448

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
            P+ +T++GVL AC+H G+V+EG  YF  M   HGI PN  H  C+VDLLGRAG L EA 
Sbjct: 449 APNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAE 508

Query: 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
             I +   + + ++W +LL ACRVH+  +  +  A++++EL+P+  A YVLL NIY    
Sbjct: 509 SFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAG 568

Query: 566 RWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625
                 E+R ++ DRG+KK PG S IE+  VVH FVAGD+SHP ++ IY++L+EM  ++K
Sbjct: 569 IQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIK 628

Query: 626 FVGYMPDISEVFLDVGEEDKER---AVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
            + Y   I E  +    E K +    V  HSEKLA+ FG+IS      +R++KNLR C  
Sbjct: 629 KLDY---IDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWH 685

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           CH   KL S + +RE+I+RD  RFH F+ GSCSC DYW
Sbjct: 686 CHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 723



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 140/303 (46%), Gaps = 4/303 (1%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           PS  T  + ++    T E+    KQIH+Q  K  L ++  + N LV    S  G ++   
Sbjct: 248 PSEFTFSS-ILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELY-SLSGSIEDGL 305

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           K F   P+  V  W ++I G+ +    + G+ ++ ++L S  +PD +T   +L       
Sbjct: 306 KCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLA 365

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           AV+ G+++H + +K G  +   +QN+ I  Y  CG++D A   F  +   D+V+W+ M S
Sbjct: 366 AVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMIS 425

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIV 248
              +     E   LF  M+  G+ P  +T + VL AC+    ++ G R    + K+  I 
Sbjct: 426 SNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGIT 485

Query: 249 PNLILENALTDMYAACGEMGFALE-IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
           PN+     + D+    G +  A   I  +    D + W ++++        D  ++  ++
Sbjct: 486 PNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAER 545

Query: 308 MPE 310
           + E
Sbjct: 546 VIE 548



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 148/319 (46%), Gaps = 33/319 (10%)

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           MP+R+ V W ++I GY ++  + E + LF+E + S++R D+FT  + L+ C     L LG
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
             +   I  + +   + + N+LIDMYCKCG ++ A+ VF      D  +W ++I G    
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC-THTGMVDEGREYFADMTIQHGIEPNEA 486
           G  D+ L +  +MLR  +  +       L AC ++     E  +      ++ G++ +  
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
               ++D   + G L +A ++ K MP  PN +++ A++         +M  MA       
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMIAGF-----LQMETMAD------ 228

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT--PGCSMIEMNGVVHEFVAGD 604
           +  NEA+Y+              F E++     RG+K +     S+++    +  F  G 
Sbjct: 229 EFANEAMYL--------------FFEMQS----RGMKPSEFTFSSILKACSTIEAFECGK 270

Query: 605 KSHPQTKEIYLKLDEMTSD 623
           + H Q  +  L+ DE   +
Sbjct: 271 QIHAQIFKYNLQSDEFIGN 289


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 260/724 (35%), Positives = 395/724 (54%), Gaps = 48/724 (6%)

Query: 6   SISPPST-LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           S+ PPST L+    L+     C S+H  +     T    + +  T+ N       ++   
Sbjct: 38  SLIPPSTYLSNHFTLL--YSKCGSLHNAQTSFDLTQYPNVFSYNTLINAY-----AKHSL 90

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           +  A +VF +IP+P +  +NT+I  Y+     +  + ++ ++ +     D +T   ++  
Sbjct: 91  IHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIA 150

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD---DV 181
              D+ +   ++LHC V+  G+D    V NA+++ Y   G ++ AR +F    +    D 
Sbjct: 151 CGDDVGLV--RQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDE 208

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           V+WNAM     + ++  E  +LF EM R+G+     T+  VL+A   +KDL  G + H  
Sbjct: 209 VSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGM 268

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           + +     N  + + L D+Y+ C                               G +   
Sbjct: 269 MIKSGFHGNSHVGSGLIDLYSKCA------------------------------GGMVEC 298

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFREMQTSNIRPDEFTIVSILTACAN 360
           R+ F+++   D VLW  MI G+ +     E  +  FREMQ +   PD+ + V + +AC+N
Sbjct: 299 RKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSN 358

Query: 361 LGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
           L +  +G+ V     K+ +  N + V NAL+ MY KCG+V  A+RVF  M   +  +  +
Sbjct: 359 LSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNS 418

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           MI G A +G   +SL +F  ML+  I P+ +T++ VLSAC HTG V+EG++YF  M  + 
Sbjct: 419 MIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERF 478

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
            IEP   HY CM+DLLGRAG L EA  +I+ MP  P SI W  LLGACR H + E+A  A
Sbjct: 479 RIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKA 538

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
           A + L+L+P N A YV+L N+YA+  RW+    +++++ +RG+KK PGCS IE++  VH 
Sbjct: 539 ANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHV 598

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL---DVGEEDKERAVYQHSEKL 656
           FVA D SHP  KEI++ + E+   +K  GY+PDI    +   +V  ++KER +  HSEKL
Sbjct: 599 FVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKL 658

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           A+AFGLIS+   V I +VKNLR+C DCH   KL+S +  RE+ VRD  RFH FK G CSC
Sbjct: 659 AVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSC 718

Query: 717 KDYW 720
            DYW
Sbjct: 719 GDYW 722



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 150/315 (47%), Gaps = 8/315 (2%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L AC   +DL  GK  H    +  I P+  L N  T +Y+ CG +  A   F   +  +
Sbjct: 15  LLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLTQYPN 74

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V S+  ++  Y     + +ARQ FD++P+ D V +  +I  Y      R AL LF E++ 
Sbjct: 75  VFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRE 134

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
                D FT+  ++ AC +   + L   +  ++          V NA++  Y + G + +
Sbjct: 135 LRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNE 192

Query: 402 AQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           A+RVFREM     +D+ +W AMIV    +  G +++++F +M+R  +  D  T   VL+A
Sbjct: 193 ARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTA 252

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR-AGHLNEALEVIKNMPMKPNS 517
            T    +  G + F  M I+ G   N      ++DL  + AG + E  +V + +   P+ 
Sbjct: 253 FTCVKDLVGGMQ-FHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA-APDL 310

Query: 518 IVWGALLGACRVHRD 532
           ++W  ++     + D
Sbjct: 311 VLWNTMISGFSQYED 325



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 194/431 (45%), Gaps = 38/431 (8%)

Query: 117 TFPFLLKGF---------TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVD 167
           TFP  L+ F          RD+    GK LH    K     S ++ N     Y  CG + 
Sbjct: 4   TFPLQLQTFRNLLKACIAQRDLIT--GKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLH 61

Query: 168 MARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
            A+  FD++   +V ++N + + Y +       R++F E+ +    P  V+   +++A A
Sbjct: 62  NAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQ----PDIVSYNTLIAAYA 117

Query: 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG-EMGFA--LEIFGNIKNKDVIS 284
              +     R    V+E +   +      L+ +  ACG ++G    L  F  +   D  +
Sbjct: 118 DRGECRPALRLFAEVRELRFGLDGF---TLSGVIIACGDDVGLVRQLHCFVVVCGYDCYA 174

Query: 285 W--TAIVTGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREM 339
               A++  Y  +G ++ AR+ F +M E   RD V W AMI    +     EA+ LFREM
Sbjct: 175 SVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREM 234

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC-GD 398
               ++ D FT+ S+LTA   +  L  G      + K+    +  VG+ LID+Y KC G 
Sbjct: 235 VRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGG 294

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD---MFSQMLRASIIPDEVTYVGV 455
           + + ++VF E+   D   W  MI G +   + D S D    F +M      PD+ ++V V
Sbjct: 295 MVECRKVFEEIAAPDLVLWNTMISGFS--QYEDLSEDGIWCFREMQHNGFHPDDCSFVCV 352

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHY-GCMVDLLGRAGHLNEALEVIKNMP-- 512
            SAC++      G++  A + I+  I  N       +V +  + G++++A  V   MP  
Sbjct: 353 TSACSNLSSPSVGKQVHA-LAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEH 411

Query: 513 --MKPNSIVWG 521
             +  NS++ G
Sbjct: 412 NMVSLNSMIAG 422


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 261/724 (36%), Positives = 396/724 (54%), Gaps = 48/724 (6%)

Query: 6   SISPPST-LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           S+ PPST L+    L+     C S+H  +     T    + +  T+ N       ++   
Sbjct: 38  SLIPPSTYLSNHFTLL--YSKCGSLHNAQTSFHLTQYPNVFSYNTLINAY-----AKHSL 90

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           +  A +VF +IP+P +  +NT+I  Y+        + ++ ++ +  +  D +T   ++  
Sbjct: 91  IHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITA 150

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD---DV 181
              D+ +   ++LHC V+  G D    V NA+++ Y   G +  AR +F    +    D 
Sbjct: 151 CGDDVGLV--RQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDE 208

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           V+WNAM     + ++  E   LF EM R+G+     T+  VL+A   +KDL  G++ H  
Sbjct: 209 VSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGM 268

Query: 242 VKECKIVPNLILENALTDMYAAC-GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           + +     N  + + L D+Y+ C G M    ++F  I   D++ W  +++G+        
Sbjct: 269 MIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGF-------- 320

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
               ++ + E                    + L  FREMQ +  RPD+ + V + +AC+N
Sbjct: 321 --SLYEDLSE--------------------DGLWCFREMQRNGFRPDDCSFVCVTSACSN 358

Query: 361 LGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
           L +  LG+ V     K+ V  N + V NAL+ MY KCG+V  A+RVF  M   +  +  +
Sbjct: 359 LSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNS 418

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           MI G A +G   +SL +F  ML   I P+ +T++ VLSAC HTG V+EG++YF  M  + 
Sbjct: 419 MIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERF 478

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
            IEP   HY CM+DLLGRAG L EA  +I+ MP  P SI W  LLGACR H + E+A  A
Sbjct: 479 CIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKA 538

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
           A + L L+P N A YV+L N+YA+  RW+    +++++ +RG+KK PGCS IE++  VH 
Sbjct: 539 ANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHV 598

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL---DVGEEDKERAVYQHSEKL 656
           FVA D SHP  KEI++ + +M   +K  GY+PDI    +   +V  +++ER +  HSEKL
Sbjct: 599 FVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKL 658

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           A+AFGLIS+  GV I +VKNLR+C DCH   KL+S +  RE+ VRD  RFH FK G CSC
Sbjct: 659 AVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSC 718

Query: 717 KDYW 720
           +DYW
Sbjct: 719 RDYW 722



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 154/317 (48%), Gaps = 12/317 (3%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L AC   +DL  GK  H    +  I P+  L N  T +Y+ CG +  A   F   +  +
Sbjct: 15  LLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLTQYPN 74

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V S+  ++  Y     + +AR+ FD++P+ D V +  +I  Y         L LF E++ 
Sbjct: 75  VFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRE 134

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF--VGNALIDMYCKCGDV 399
             +  D FT+  ++TAC +    ++G   + +       +D +  V NA++  Y + G +
Sbjct: 135 LRLGLDGFTLSGVITACGD----DVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFL 190

Query: 400 EKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
            +A+RVFREM     +D+ +W AMIV    +  G +++ +F +M+R  +  D  T   VL
Sbjct: 191 SEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVL 250

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR-AGHLNEALEVIKNMPMKP 515
           +A T    +  GR+ F  M I+ G   N      ++DL  + AG + E  +V + +   P
Sbjct: 251 TAFTCVKDLVGGRQ-FHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEI-TAP 308

Query: 516 NSIVWGALLGACRVHRD 532
           + ++W  ++    ++ D
Sbjct: 309 DLVLWNTMISGFSLYED 325



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 190/421 (45%), Gaps = 25/421 (5%)

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           TF  LLK       +  GK LH    K     S ++ N     Y  CG +  A+  F ++
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
              +V ++N + + Y +       R++F E+ +    P  V+   +++A A   +     
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQ----PDIVSYNTLIAAYADRGECGPTL 126

Query: 237 RAHRYVKECKI-VPNLILENALTDMYAACG-EMGFA--LEIFGNIKNKDVISW--TAIVT 290
           R    V+E ++ +    L   +T    ACG ++G    L  F  +   D  +    A++ 
Sbjct: 127 RLFEEVRELRLGLDGFTLSGVIT----ACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLA 182

Query: 291 GYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
            Y  +G +  AR+ F +M E   RD V W AMI    +     EA+ LFREM    ++ D
Sbjct: 183 CYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVD 242

Query: 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC-GDVEKAQRVF 406
            FT+ S+LTA   +  L  G      + K+    +  VG+ LID+Y KC G + + ++VF
Sbjct: 243 MFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVF 302

Query: 407 REMLRKDKFTWTAMIVGLAI-NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
            E+   D   W  MI G ++     +  L  F +M R    PD+ ++V V SAC++    
Sbjct: 303 EEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSP 362

Query: 466 DEGREYFADMTIQHGIEPNEAHY-GCMVDLLGRAGHLNEALEVIKNMP----MKPNSIVW 520
             G++  A + I+  +  N       +V +  + G++++A  V   MP    +  NS++ 
Sbjct: 363 SLGKQVHA-LAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIA 421

Query: 521 G 521
           G
Sbjct: 422 G 422


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/624 (36%), Positives = 359/624 (57%), Gaps = 37/624 (5%)

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFT---RDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
           +L +  +  +       F ++G +   R  ++E  K++H H+LK G     F  + L++T
Sbjct: 12  FLSLPNNPPQSSELNAKFNVQGLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVAT 71

Query: 160 YCLC--GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
             L   G ++ A  IF    +     +N M  G       +E   L+ EM  +G+ P + 
Sbjct: 72  CALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNF 131

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T   VL AC+ L  L  G + H +V +  +  ++ ++N L +MY  CG            
Sbjct: 132 TYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCG------------ 179

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
                               ++ A   F+QM E+    W+++I  +  V  + E L L  
Sbjct: 180 -------------------AIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLG 220

Query: 338 EMQ-TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
           +M      R +E  +VS L+AC +LG+   G  +   + +N  + ++ V  +LIDMY K 
Sbjct: 221 DMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKS 280

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G +EK   VF+ M +K+++++T +I GLAI+G G ++L +FS ML   + PD+V YVGVL
Sbjct: 281 GSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVL 340

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+H G+V+EG + F  +  +H I+P   HYGCMVDL+GRAG L  A ++IK+MP+KPN
Sbjct: 341 SACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPN 400

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
            +VW +LL AC+VH + E+ E+AA+ I +L+  N   Y++L N+YA   +W +   +R  
Sbjct: 401 DVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRTE 460

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + ++ + +TPG S++E N  V++FV+ DKS PQ + IY  + +M   LKF GY PD+S+V
Sbjct: 461 MAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQV 520

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
            LDV E++K + +  HS+KLA+AF LI +  G  IRI +N+RMC DCH   K +S++Y+R
Sbjct: 521 LLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYER 580

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           E+ VRD+ RFHHFK G+CSCKDYW
Sbjct: 581 EITVRDRNRFHHFKDGTCSCKDYW 604



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 213/427 (49%), Gaps = 43/427 (10%)

Query: 7   ISPPSTLTQETPL--------ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC 58
           +S P+   Q + L        +S ++ C+SM + KQ+H+  +KLGL  +    + LV  C
Sbjct: 13  LSLPNNPPQSSELNAKFNVQGLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATC 72

Query: 59  C-SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
             S  G M+YAC +FR+I  P    +NTMI+G     + +  +L+Y++ML+  + PDN+T
Sbjct: 73  ALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFT 132

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           +PF+LK  +   A++ G ++H HV K G +  VFVQN LI+ Y  CG ++ A  +F+   
Sbjct: 133 YPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMD 192

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGK 236
           +  V +W+++   +  V+ + E   L G+M  +G      +I++  LSAC  L   + G+
Sbjct: 193 EKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGR 252

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
             H  +       N+ ++ +L DMY   G +   L +F N+  K+  S+T I+TG    G
Sbjct: 253 CIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHG 312

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
                                          R REAL++F +M    + PD+   V +L+
Sbjct: 313 -------------------------------RGREALSVFSDMLEEGLAPDDVVYVGVLS 341

Query: 357 ACANLGALELGEWVKTYID-KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
           AC++ G +  G      +  ++K+K  I     ++D+  + G ++ A  + + M ++ + 
Sbjct: 342 ACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPND 401

Query: 415 FTWTAMI 421
             W +++
Sbjct: 402 VVWRSLL 408


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/498 (41%), Positives = 312/498 (62%), Gaps = 6/498 (1%)

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI-KNKDV 282
           SAC+ L     G   H    +     +L + NAL   Y   G++G    +F  + + +DV
Sbjct: 159 SACSFL-----GSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDV 213

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           ++W  ++ GY+  G + +AR+ FD+MP RD + W+ ++ GY++      AL +FR M   
Sbjct: 214 LTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQ 273

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
            +RP++  +V+ L+A A LG LE G++V   + ++ +   + VG AL+DMY KCG V  A
Sbjct: 274 GVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVA 333

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
           + VF  M R+D F W AMI GLA +G G  ++++F + +   + P  VT+VGVL+ C+ +
Sbjct: 334 REVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRS 393

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G+V EGR YF  +  ++ IEP   HYGCMVDLLGRAG + EA+E+I+ M + P+ ++WG 
Sbjct: 394 GLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGT 453

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           +L +C+ H   ++      +++ELDP +   YVLL  IYA  N+WD  RE+R+++  RG 
Sbjct: 454 ILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGT 513

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
            K+ G S++E +G VH+F+ GD  H  + +IY  LD +   L   GY+PD+S V  D+GE
Sbjct: 514 NKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGE 573

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E+K  AV  HSE+LA+A+G I    G  IRIVKNLR+C DCH  +K+V+MV+ RE+IVRD
Sbjct: 574 EEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRD 633

Query: 703 KTRFHHFKHGSCSCKDYW 720
            +RFHH K G CSC DYW
Sbjct: 634 GSRFHHMKEGKCSCLDYW 651



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 127/574 (22%), Positives = 214/574 (37%), Gaps = 139/574 (24%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF--------------CCSEKGD 64
           L + +    ++ Q++Q H++   LGL  +  + + L                    +   
Sbjct: 35  LAALLPPSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPDKPRHRGDDGGGDGDH 94

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
             Y   +FR+    S    N ++    R+  H     + L +     R + ++F FLL  
Sbjct: 95  YAYPLALFRRANSTSAFASNNLL----RVLPHP----LPLTLFSRFRRRNPHSFTFLLAS 146

Query: 125 FTRDI--------AVEF-GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD- 174
            +  +        A  F G  +H   +K G    +FV+NAL+  Y + G+V   R +FD 
Sbjct: 147 ISNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDE 206

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME-------------------------- 208
           +    DV+TWN + +GY R       R++F EM                           
Sbjct: 207 LPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGV 266

Query: 209 -----RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
                 +GV P    +V  LSA A+L  L+ GK  H  V+   +   + +  AL DMYA 
Sbjct: 267 FRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAK 326

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           CG +  A E+F  ++ +DV +W A++ G    G                           
Sbjct: 327 CGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGL-------------------------- 360

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKND 382
                 R+A+ LF    +  + P   T V +L  C+  G +  G  + K  ++K +++ +
Sbjct: 361 -----GRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPE 415

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           +     ++D+  + G V +A  +   M                                 
Sbjct: 416 MEHYGCMVDLLGRAGLVPEAIELIEGM--------------------------------- 442

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG---RAG 499
             I PD V +  +LS+C   G+VD G      +     IE +  H G  V L G   +A 
Sbjct: 443 -HIAPDPVLWGTILSSCKTHGLVDLGVSVGNKL-----IELDPTHSGYYVLLSGIYAKAN 496

Query: 500 HLNEALEVIKNMPMKPN--SIVWGALLGACRVHR 531
             +E  EV K M  +    S  W  +    +VH+
Sbjct: 497 KWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHK 530


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/440 (47%), Positives = 287/440 (65%)

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           DV+SWT +V G    G VD AR+ FD MP R+ V W +MI GY++ +RF +AL +F EM+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
              +  + F   S L AC   GAL  G  +  +++++ ++ D  +  A++DMYCKCG V+
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
           +A RVF  +  +   TW  MI G A++G  D +L++F QM  A + PD+VT + VL+AC 
Sbjct: 283 EAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           H G V EGR Y   +  +HGIEP   HYGCMVDL GRAG L+EA +VI  MPM P+  V 
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402

Query: 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
           GALLGAC++H D ++ E    ++++LDPDN   YVLL N+ A   RWD   ++R+++ +R
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
            + K  G S+IE++G   EF  G+  HPQ +EIY    +M S ++  GY+PD  E   DV
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 641 GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIV 700
            EEDKE A+  HSEKLA+AFGL+ + P  T+RI KNLR+C DCH   K VS V+ RE++V
Sbjct: 523 AEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVV 582

Query: 701 RDKTRFHHFKHGSCSCKDYW 720
           RD++RFHHFK G CSCKDYW
Sbjct: 583 RDRSRFHHFKDGMCSCKDYW 602



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 130/285 (45%), Gaps = 11/285 (3%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A +VF  +P  ++  WN+MI GY + D   + + ++ +M    V  + +     L   T 
Sbjct: 183 AREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACTG 242

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             A+  G+E++  V + G +    +  A++  YC CG VD A  +FD      + TWN M
Sbjct: 243 AGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCM 302

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR-AHRYVKECK 246
             G+    + D+  +LF +ME  GV P  VT++ VL+ACA   ++  G+R  +  V    
Sbjct: 303 IGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHG 362

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMAR--- 302
           I P       + D++   G++  A ++   +  + D+    A++      G VD+     
Sbjct: 363 IEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEAIG 422

Query: 303 -QYFDQMPERD--YVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
            +  D  P+    YVL   ++ G     R+ E   + R M   N+
Sbjct: 423 WRVIDLDPDNSGRYVLLANLLAG---AGRWDEVGKVRRLMDERNV 464


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 257/738 (34%), Positives = 392/738 (53%), Gaps = 58/738 (7%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQ--NKLVTFCCS 60
           SNS+    S + ++TP         S  Q KQ+H+  +K    T  T+   N LV    S
Sbjct: 2   SNSTQHTISKILRKTP---NKTLSVSTRQAKQLHAHIVK----TKGTLHSDNILVLSLYS 54

Query: 61  EKGDMKYACKVFRKIPRPSVCL-WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
               ++++  +F  +P P   L W+++IK Y+           +  M    V P+ + FP
Sbjct: 55  NLNLLQHSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFP 114

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC-------------GE- 165
            LLK  T     +    LH   ++ G DS +++ NALI+TY                GE 
Sbjct: 115 SLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGES 174

Query: 166 -VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVL 223
            +D  + +FD+    DVV+WN + +G+ +   + E   +  EM + G L P S T+  +L
Sbjct: 175 GIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSIL 234

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
              A+  D++ GK  H Y        ++ + ++L DMYA C  +  +L  F         
Sbjct: 235 PIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAF--------- 285

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
                   YI              +P +D + W ++I G ++   F   L  FR M   N
Sbjct: 286 --------YI--------------LPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKEN 323

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           ++P   +  S++ ACA+L AL LG  +   I +    ++ F+ ++L+DMY KCG+++ A+
Sbjct: 324 VKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMAR 383

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
            VF  + ++D   WTA+I+G A++GH   ++ +F  ML   + P  V ++ VL+AC+H G
Sbjct: 384 YVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAG 443

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGA 522
           +VDEG  YF  M    GI P   HY  + DLLGRAG L EA + I NM  ++P   VW  
Sbjct: 444 LVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSI 503

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL ACR H+  E+AE    ++L +D +N   YVL+ NIY+A  RW +   LR  +  +G+
Sbjct: 504 LLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGL 563

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KKTP CS IE+   VH F+AGDKSHP   +I   LD +   ++  GY+ D ++V  DV E
Sbjct: 564 KKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDE 623

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E K   ++ HSE+LA+A+G+IS+  G TIR++KN+R+C DCH   K ++ +  RE+ VRD
Sbjct: 624 ELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRD 683

Query: 703 KTRFHHFKHGSCSCKDYW 720
            +RFHHFK+GSCSC DYW
Sbjct: 684 NSRFHHFKNGSCSCGDYW 701


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/558 (41%), Positives = 337/558 (60%), Gaps = 38/558 (6%)

Query: 169 ARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETRK----LFGEMERKGVLPTSVTIVLVL 223
           AR +FD + +  DV+ +N +  GY R        +    +F  M  +GV P + T V +L
Sbjct: 86  ARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            ACA  +  + G++AH    +     +  +   L +MYA CG+                 
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGD----------------- 188

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
                         V  AR  FD+M     V + AMI   +R +   EAL LFREMQ   
Sbjct: 189 --------------VRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKG 234

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           ++P   T++S+L+ACA LGALELG W+  YI K ++ + + V  ALIDMY KCG +E A 
Sbjct: 235 LKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAI 294

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
            VF++M  +DK  W+ M+V  A +G+G +++ MF +M +  + PD+VT++GVL AC+H+G
Sbjct: 295 GVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSG 354

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
           MV EG +YF  M  ++GI     HYGC+ DLL R+G L  A + I  +P+KP +I+W  L
Sbjct: 355 MVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTL 413

Query: 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           L AC  H D +M +   ++ILELD  +   YV+  N+ A   RW+    +R+++ ++G+ 
Sbjct: 414 LSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVV 473

Query: 584 KTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF-LDVGE 642
           K PGCS IE++ +VHEF AGD SHP ++E    +DE+   LK VGY+P+ S VF +++GE
Sbjct: 474 KVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGE 533

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E+K  ++  HSEKLA++FGL+++ PG T+RIVKNLR+C DCH MAKLVSMV++R +I+RD
Sbjct: 534 EEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRD 593

Query: 703 KTRFHHFKHGSCSCKDYW 720
             RFHHF+ G CSC DYW
Sbjct: 594 LNRFHHFEDGVCSCGDYW 611



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 230/464 (49%), Gaps = 50/464 (10%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLG--LLTNPTVQNKLVTFCCSEKGD----MKYACKVF 72
           L++ +  C S+  L Q+H+  +K G  L  +P    +L+T C  +  +    + YA +VF
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVF 90

Query: 73  RKIPRPSVCLW-NTMIKGYSRIDSHKNGVL----IYLDMLKSDVRPDNYTFPFLLKGFTR 127
            +IP P   +W NT+++GY+R      G      +++ M++  V PD YTF  LLK    
Sbjct: 91  DRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACAS 150

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             A E G++ H   +K G     +V   LI+ Y  CG+V  AR +FD    + VV++NAM
Sbjct: 151 ARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAM 210

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            +   R     E   LF EM+ KG+ PTSVT++ VLSACA L  L++G+  H Y+++ ++
Sbjct: 211 ITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRL 270

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
              + +  AL DMYA CG +  A+ +F +++++D  +W+ ++  Y N G           
Sbjct: 271 DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGY---------- 320

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                 REA+++F EM+   ++PD+ T + +L AC++ G +  G
Sbjct: 321 ---------------------GREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEG 359

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAI 426
                 + +  + + I     + D+  + G +E+A +   E+ ++     W  ++   A 
Sbjct: 360 LQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACA- 418

Query: 427 NGHGDKSLDMFSQMLRASIIPDEV---TYVGVLSACTHTGMVDE 467
            GHGD  +DM  ++    +  D+     YV   + C +TG  +E
Sbjct: 419 -GHGD--VDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEE 459


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/596 (39%), Positives = 349/596 (58%), Gaps = 43/596 (7%)

Query: 134 GKELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           G++LH   ++ G F S  F  +AL+  Y  C     AR  FD     + V   AM SGY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIV------LVLSACAKLKDLDVGKRAHRYVKECK 246
           R      +  LF    RK +   S T V      +  SA A++ D  +    H  V +  
Sbjct: 168 RNNLVYPSLALF----RKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTG 223

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
           +  +  + N + D YA  G                             R  +  AR+ FD
Sbjct: 224 LDGDAGVVNTMLDAYAKGG-----------------------------RRDLGAARKVFD 254

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ--TSNIRPDEFTIVSILTACANLGAL 364
            M E+D V W +MI  Y +     +AL L+R+M   + +I+ +  T+ +IL ACA+ G +
Sbjct: 255 TM-EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTI 313

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           + G+ +   + +  ++ +++VG +++DMY KCG VE A++ F+++  K+  +W+AMI G 
Sbjct: 314 QTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGY 373

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
            ++GHG ++LD+F++M R+   P+ +T++ VL+AC+H G++D+GR ++  M  + GIEP 
Sbjct: 374 GMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPG 433

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             HYGCMVDLLGRAG L+EA  +IK M +KP++ +WGALL ACR+H++ E+AE++AK++ 
Sbjct: 434 VEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLF 493

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           ELD  N   YVLL NIYA    W +   +R ++  RGI+K PG S +E+ G  H F  GD
Sbjct: 494 ELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGD 553

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           KSHPQ KEIY  L ++   ++  GY+P+   V  D+ EE+K  A++ HSEKLA+AF L++
Sbjct: 554 KSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMN 613

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S PG  I ++KNLR+C DCH   KL++ +  RE+IVRD  RFHHFK GSCSC DYW
Sbjct: 614 SVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 173/400 (43%), Gaps = 46/400 (11%)

Query: 33  KQIHSQTIKLGLL-TNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
           +Q+H   I+ GL  ++P   + L+     CS   D +   K F +IP P+  +   M  G
Sbjct: 109 RQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDAR---KAFDEIPSPNPVIITAMASG 165

Query: 90  YSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           Y R +     + ++  ++ S      D            R         LH  V+K G D
Sbjct: 166 YVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLD 225

Query: 148 SSVFVQNALISTYCLCGEVDM--ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
               V N ++  Y   G  D+  AR +FD   K DVV+WN+M + Y +     +   L+ 
Sbjct: 226 GDAGVVNTMLDAYAKGGRRDLGAARKVFDTMEK-DVVSWNSMIALYAQNGMSADALGLYR 284

Query: 206 EM--ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           +M      +   +VT+  +L ACA    +  GK  H  V    +  N+ +  ++ DMY+ 
Sbjct: 285 KMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSK 344

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           CG +  A + F  IK K+++SW+A++TGY   G                           
Sbjct: 345 CGRVEMARKAFQKIKEKNILSWSAMITGYGMHGH-------------------------- 378

Query: 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKND 382
                 +EAL +F EM  S   P+  T +S+L AC++ G L+ G  W      +  ++  
Sbjct: 379 -----GQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPG 433

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
           +     ++D+  + G +++A  + +EM ++ D   W A++
Sbjct: 434 VEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALL 473



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 134/284 (47%), Gaps = 6/284 (2%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
            +H+  +K GL  +  V N ++  +    + D+  A KVF  + +  V  WN+MI  Y++
Sbjct: 214 SLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTMEK-DVVSWNSMIALYAQ 272

Query: 93  IDSHKNGVLIYLDML--KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
                + + +Y  ML     ++ +  T   +L        ++ GK +H  V++ G + +V
Sbjct: 273 NGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENV 332

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
           +V  +++  Y  CG V+MAR  F    + ++++W+AM +GY       E   +F EM R 
Sbjct: 333 YVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRS 392

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLILENALTDMYAACGEMGF 269
           G  P  +T + VL+AC+    LD G+  +  +K+   I P +     + D+    G +  
Sbjct: 393 GQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDE 452

Query: 270 ALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           A  +   +K K D   W A+++       V++A     ++ E D
Sbjct: 453 AYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELD 496


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/640 (38%), Positives = 373/640 (58%), Gaps = 35/640 (5%)

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA--VEFGKELHCHVLKF 144
           +  +S    H   ++ +  M +S  RPD  TF  +L    +  A  ++ G+E+H +    
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           G   +V V  A+IS Y  CG +D AR  F+     + VTWNAM + YK   +  E  +LF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 205 GEM-ER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
            EM ER +   P   +  + + AC+ L+DL+ G+  H  ++                   
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRR------------------ 162

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM-PERDYVLWTAMID 321
                       G   +KDV+  TA++  Y   G ++ AR+ FD +  + D V W AMI 
Sbjct: 163 -----------EGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIA 211

Query: 322 GYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            Y +  R ++AL L+R M  T+++ P + T V+++  CA L AL+ G  +   +      
Sbjct: 212 AYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFD 271

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            ++ V NAL+ MY KCG +++A  VF  M  KD+ +W  +I   A +GH D++L ++ +M
Sbjct: 272 ANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEM 331

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
               + P EVT+VG+LSAC+H G+V +G +YF  M   H I+P+  H+GC++DLLGR G 
Sbjct: 332 DLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGR 391

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L EA  V+K+MP++ N++ W +LLGAC+ H D +    AA Q+++  P     YVLL NI
Sbjct: 392 LAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNI 451

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YAA  RW +  ++R+++  RG+KK+PG S IE+  VVHEFV+GD+SHPQ +EIY++L +M
Sbjct: 452 YAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKM 511

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
             ++K +GY+PD S VF D+ EE+KE  +  HSEKLA+ +G +       +RIVKNLR+C
Sbjct: 512 VEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVC 571

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +DCH   K +S +  R+++VRD  RFH F++GSCSC+DYW
Sbjct: 572 LDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 154/328 (46%), Gaps = 16/328 (4%)

Query: 23  IETC---ESMHQLKQIHSQTIKLG--LLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           IE C   E + Q ++IH    + G  L  +  V   L+    S+ GD++ A KVF  I  
Sbjct: 141 IEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMY-SKCGDLEEARKVFDSIRH 199

Query: 78  P--SVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFG 134
              SVC WN MI  Y++    K  + +Y  M   +D+ P   TF  ++       A++ G
Sbjct: 200 DADSVC-WNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQG 258

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           + +H  V    FD+++ V NAL+  Y  CG +D A  +F      D ++WN + S Y   
Sbjct: 259 RAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYH 318

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLIL 253
              D+   L+ EM+ +GV PT VT V +LSAC+    +  G    +R   + +I P++  
Sbjct: 319 GHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPH 378

Query: 254 ENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
              + D+    G +  A  +  ++    + + W +++      G +    +  DQ+ +R 
Sbjct: 379 FGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDR- 437

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQ 340
            V WT+   GY+ ++    A   +++++
Sbjct: 438 -VPWTS--GGYVLLSNIYAAAGRWKDVE 462


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/698 (35%), Positives = 380/698 (54%), Gaps = 45/698 (6%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           + IH+     GL     + N L+   C + G + +A  VF          WN++I GY R
Sbjct: 140 RLIHALITVSGLGGPVLLTNSLIDMYC-KCGRIDWARLVFESADELDSVSWNSLIAGYVR 198

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--GFTRDIAVEFGKELHCHVLKFGFDSSV 150
           I S+   + + + ML+  +  ++Y     LK  G     ++E GK LH   +K G D  V
Sbjct: 199 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 258

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF-----DETRKLFG 205
            V  AL+ TY   G+++ A  IF +    +VV +NAM +G+ +++       +E   LF 
Sbjct: 259 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 318

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           EM+ +G+ P+  T   +L AC+ ++  + GK+ H  + +  +  +  + NAL ++Y+   
Sbjct: 319 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSL-- 376

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
                                         G ++   + F   P+ D V WT++I G+++
Sbjct: 377 -----------------------------SGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQ 407

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
             +F   LTLF E+  S  +PDEFTI  +L+ACANL A++ GE +  Y  K  + N   +
Sbjct: 408 NGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTII 467

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            N+ I MY KCGD++ A   F+E    D  +W+ MI   A +G   +++D+F  M  + I
Sbjct: 468 QNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGI 527

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
            P+ +T++GVL AC+H G+V+EG  YF  M   HGI PN  H  C+VDLLGRAG L EA 
Sbjct: 528 APNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAE 587

Query: 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
             I +   + + ++W +LL ACRVH+  +  +  A++++EL+P+  A YVLL NIY    
Sbjct: 588 SFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAG 647

Query: 566 RWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625
                 E+R ++ DRG+KK PG S IE+  VVH FVAGD+SHP ++ IY++L+EM  ++K
Sbjct: 648 IQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIK 707

Query: 626 FVGYMPDISEVFLDVGEEDKER---AVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
            + Y   I E  +    E K +    V  HSEKLA+ FG+IS      +R++KNLR C  
Sbjct: 708 KLDY---IDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWH 764

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           CH   KL S + +RE+I+RD  RFH F+ GSCSC DYW
Sbjct: 765 CHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 802



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 140/303 (46%), Gaps = 4/303 (1%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           PS  T  + ++    T E+    KQIH+Q  K  L ++  + N LV    S  G ++   
Sbjct: 327 PSEFTFSS-ILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELY-SLSGSIEDGL 384

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           K F   P+  V  W ++I G+ +    + G+ ++ ++L S  +PD +T   +L       
Sbjct: 385 KCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLA 444

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           AV+ G+++H + +K G  +   +QN+ I  Y  CG++D A   F  +   D+V+W+ M S
Sbjct: 445 AVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMIS 504

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIV 248
              +     E   LF  M+  G+ P  +T + VL AC+    ++ G R    + K+  I 
Sbjct: 505 SNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGIT 564

Query: 249 PNLILENALTDMYAACGEMGFALE-IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
           PN+     + D+    G +  A   I  +    D + W ++++        D  ++  ++
Sbjct: 565 PNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAER 624

Query: 308 MPE 310
           + E
Sbjct: 625 VIE 627



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 97/198 (48%), Gaps = 3/198 (1%)

Query: 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           D  T   ++      G+L  G+    ++ K   K  +F+ N L+ MYCKCG+ + A+++F
Sbjct: 18  DSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLF 77

Query: 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
             M +++  +W ++I G    G   + +++F +   + +  D+ T+   LS C  T  + 
Sbjct: 78  DRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLR 137

Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-G 525
            GR   A +T+  G+         ++D+  + G ++ A  V ++   + +S+ W +L+ G
Sbjct: 138 LGRLIHALITVS-GLGGPVLLTNSLIDMYCKCGRIDWARLVFESAD-ELDSVSWNSLIAG 195

Query: 526 ACRVHRDAEMAEMAAKQI 543
             R+  + EM  +  K +
Sbjct: 196 YVRIGSNDEMLRLLVKML 213


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/615 (36%), Positives = 343/615 (55%), Gaps = 42/615 (6%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           +  +  C   + +K++H+Q IK  L  +  V  KL++   S    M  A  VF +I  P+
Sbjct: 27  LQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLIS-AFSLCHQMNLAVNVFNQIQDPN 85

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           V L+NT+I+ + +          + DM K+ +  DN+T+PFLLK       +   + +HC
Sbjct: 86  VHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHC 145

Query: 140 HVLKFGFDSSVFVQNALISTYCLCG--EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           HV K+GF   +FV N+LI +Y  CG   V+ A  +F    + D+V+WN+M  G  +    
Sbjct: 146 HVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDL 205

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
              RKLF EM  +                                       + +  N +
Sbjct: 206 GRARKLFDEMAER---------------------------------------DAVSWNTI 226

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            D Y   GEM  A  +F  +  ++V+SW+ +V+GY   G ++MAR  FD+MP ++ V WT
Sbjct: 227 LDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWT 286

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
            +I G+      +EA TL+ +M+ + ++PD+ T++SIL ACA  G L LG+ V   I K 
Sbjct: 287 IIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKI 346

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
           ++K  + V NAL+DMY KCG V+KA  +F EM  +D  +W  M+ GLA++GHG+K++ +F
Sbjct: 347 RIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLF 406

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           S+M +    PD+VT + +L ACTH G VD+G  YF  M   HGI P+  HYGCM+DLLGR
Sbjct: 407 SKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGR 466

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
            G L EA  ++++MPM+PN ++WG LLGACRVH    +AE    +++ L+  +   Y +L
Sbjct: 467 GGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSML 526

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            NI+AA   W++   +R  +   G++K  G S IE++  VHEF   DKSHP+T +IY  L
Sbjct: 527 SNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEFTVFDKSHPETDKIYQIL 586

Query: 618 DEMTSDLKFVGYMPD 632
            ++  DLK V Y P+
Sbjct: 587 VKLGQDLKQVAYAPE 601


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/616 (36%), Positives = 353/616 (57%), Gaps = 32/616 (5%)

Query: 105 DMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCG 164
           D+  S +  D   +  LLK  T    +  G+ +H H+++  F   + + N L++ Y  CG
Sbjct: 41  DLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCG 100

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
            ++ AR +FD   + D VTW  + SGY +  +  +   LF +M R G  P   T+  V+ 
Sbjct: 101 SLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIK 160

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           A A  +    G + H +  +C    N+ + +AL D+Y   G M                 
Sbjct: 161 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM----------------- 203

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                         D A+  FD +  R+ V W A+I G+ R     +AL LF+ M     
Sbjct: 204 --------------DDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGF 249

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           RP  F+  S+  AC++ G LE G+WV  Y+ K+  K   F GN L+DMY K G +  A++
Sbjct: 250 RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARK 309

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           +F  + ++D  +W +++   A +G G++++  F +M R  I P+E++++ VL+AC+H+G+
Sbjct: 310 IFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGL 369

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           +DEG  Y+ ++  + GI     HY  +VDLLGRAG LN AL  I+ MP++P + +W ALL
Sbjct: 370 LDEGWHYY-ELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 428

Query: 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
            ACR+H++ E+   AA+ + ELDPD+   +V+L NIYA+  RW++   +R+ + + G+KK
Sbjct: 429 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 488

Query: 585 TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED 644
            P CS +E+   +H FVA D+ HPQ +EI  K +E+ + +K +GY+PD S V + V +++
Sbjct: 489 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 548

Query: 645 KERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKT 704
           +E  +  HSEK+A+AF L+++ PG TI I KN+R+C DCH   KL S    RE+IVRD  
Sbjct: 549 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTN 608

Query: 705 RFHHFKHGSCSCKDYW 720
           RFHHFK G+CSCKDYW
Sbjct: 609 RFHHFKDGACSCKDYW 624



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 195/420 (46%), Gaps = 35/420 (8%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           Q + +H   I+  +  +  V N  +    ++ G ++ A KVF K+P      W T+I GY
Sbjct: 69  QGRIVHGHLIQ-SIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGY 127

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           S+ D   + ++++  ML+    P+ +T   ++K    +     G +LH   +K GFDS+V
Sbjct: 128 SQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNV 187

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            V +AL+  Y   G +D A+ +FD     + V+WNA+ +G+ R    ++  +LF  M R+
Sbjct: 188 HVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLRE 247

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G  P+  +   +  AC+    L+ GK  H Y+ +          N L DMYA  G +  A
Sbjct: 248 GFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDA 307

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            +IF  +  +DV+SW +++T Y   G  +                               
Sbjct: 308 RKIFDRLAKRDVVSWNSLLTAYAQHGFGN------------------------------- 336

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           EA+  F EM+   IRP+E + +S+LTAC++ G L+ G      + K+ +  + +    ++
Sbjct: 337 EAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIV 396

Query: 391 DMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           D+  + GD+ +A R   EM +      W A++   A   H +  L  ++      + PD+
Sbjct: 397 DLLGRAGDLNRALRFIEEMPIEPTAAIWKALLN--ACRMHKNTELGAYAAEHVFELDPDD 454



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 144/319 (45%), Gaps = 7/319 (2%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           Q+H   +K G  +N  V + L+    +  G M  A  VF  +   +   WN +I G++R 
Sbjct: 173 QLHGFCVKCGFDSNVHVGSALLDLY-TRYGLMDDAQLVFDALESRNDVSWNALIAGHARR 231

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
              +  + ++  ML+   RP ++++  L    +    +E GK +H +++K G     F  
Sbjct: 232 CGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG 291

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N L+  Y   G +  AR IFD   K DVV+WN++ + Y +    +E    F EM R G+ 
Sbjct: 292 NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIR 351

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P  ++ + VL+AC+    LD G   +  +K+  IV        + D+    G++  AL  
Sbjct: 352 PNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRF 411

Query: 274 FGNIKNKDVIS-WTAIVTGYINRGQVDM----ARQYFDQMPERDYVLWTAMIDGYLRVNR 328
              +  +   + W A++         ++    A   F+  P+ D      + + Y    R
Sbjct: 412 IEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPD-DPGPHVILYNIYASGGR 470

Query: 329 FREALTLFREMQTSNIRPD 347
           + +A  + ++M+ S ++ +
Sbjct: 471 WNDAARVRKKMKESGVKKE 489


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/522 (41%), Positives = 324/522 (62%), Gaps = 3/522 (0%)

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
           +LF  + R G  P  +   L L+ CA+ +      + H +  +     +  + N L   Y
Sbjct: 61  RLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLIHAY 120

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           + CG +  A ++F +    D+I+W  ++ GY         R++F QMP RD V W  +I 
Sbjct: 121 SVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNTVIA 180

Query: 322 GYLRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
             +      EA+ +FREM  SN  +PD  T+VS+++A A LGAL  G W   Y+ + +++
Sbjct: 181 WCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRKEIE 240

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLR-KDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
            D  + +ALI+MY KCG +E A  VF      +   TW AM+ G   +G  +++L++F++
Sbjct: 241 VDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERALELFTR 300

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M  +  +P+++T+  +L+AC+H G V+EG  YF  MT    IEP+ AHYGCMVDL  RAG
Sbjct: 301 MESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFCRAG 360

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
              +A E+I+ MPM+P++ VW AL+GACR + + E+ + A  +++E  P++ A YVLL N
Sbjct: 361 LFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGYVLLSN 420

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           IYA    W    ++R+++L+ G++K PG S IE++GV+HEF++GDKSH + +++Y  L E
Sbjct: 421 IYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKRDVYEMLSE 480

Query: 620 MTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
           +   LK  GY PD S+V LD+ +ED KE ++  HSE+LA+AFGLIS+ PG  IRIVKNLR
Sbjct: 481 ICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPGTPIRIVKNLR 540

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C DCH   KL+S +Y R ++VRD  RFH F+ GSCSC DYW
Sbjct: 541 VCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 158/365 (43%), Gaps = 67/365 (18%)

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           R++ H   + ++  +L+S   PD   +   L    R+ A     +LH H  K G  S   
Sbjct: 53  RLNPHL-ALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRR 111

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V+N LI  Y +CG +  AR +FD   + D++ WN +  GY + +     R+ F +M  + 
Sbjct: 112 VRNGLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARD 171

Query: 212 VL--------------------------------PTSVTIVLVLSACAKLKDLDVGKRAH 239
            +                                P  VT+V V+SA A L  L  G  AH
Sbjct: 172 SVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAH 231

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN-IKNKDVISWTAIVTGYINRGQV 298
            YV   +I  +  L +AL +MY+ CG +  A+ +F N    + V +W A++ G+   G  
Sbjct: 232 AYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASG-- 289

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                      ER                    AL LF  M++S   P++ T  ++L AC
Sbjct: 290 ---------CSER--------------------ALELFTRMESSGFVPNKITFNTLLNAC 320

Query: 359 ANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFT 416
           ++ G +E G  + +   + + ++ DI     ++D++C+ G  EKA+ + + M +  D   
Sbjct: 321 SHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFCRAGLFEKAEEMIQMMPMEPDAAV 380

Query: 417 WTAMI 421
           W A++
Sbjct: 381 WKALV 385



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 120/291 (41%), Gaps = 36/291 (12%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR- 92
           Q+H    K G  ++  V+N L+    S  G +  A KVF   P   +  WN +++GY++ 
Sbjct: 96  QLHGHAAKRGAASHRRVRNGLI-HAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQG 154

Query: 93  ---------------IDS---------------HKNGVLIYLDMLKS-DVRPDNYTFPFL 121
                           DS               H+  V ++ +ML S + +PD  T   +
Sbjct: 155 RDTGALREFFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSV 214

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK-DD 180
           +       A+  G   H +V +   +    + +ALI+ Y  CG ++ A  +F+ S     
Sbjct: 215 ISAIAYLGALAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRS 274

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG-KRAH 239
           V TWNAM +G+      +   +LF  ME  G +P  +T   +L+AC+    ++ G     
Sbjct: 275 VDTWNAMLAGFTASGCSERALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFE 334

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIV 289
           R      I P++     + D++   G    A E+   +    D   W A+V
Sbjct: 335 RMTNSSSIEPDIAHYGCMVDLFCRAGLFEKAEEMIQMMPMEPDAAVWKALV 385



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 33/227 (14%)

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL LF  +  S   PD       L  CA   A      +  +  K    +   V N LI 
Sbjct: 59  ALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLIH 118

Query: 392 MYCKCGDVEKAQRV-------------------------------FREMLRKDKFTWTAM 420
            Y  CG +  A++V                               F +M  +D  +W  +
Sbjct: 119 AYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNTV 178

Query: 421 IVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           I     NG  ++++ +F +ML ++   PD VT V V+SA  + G + +G    A    + 
Sbjct: 179 IAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHA-YVCRK 237

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
            IE +E     ++++  + G +  A+ V +N     +   W A+L  
Sbjct: 238 EIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAG 284


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/615 (36%), Positives = 353/615 (57%), Gaps = 51/615 (8%)

Query: 15  QETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG----------- 63
            E P +  + +C+S+ ++KQIH+  IK    T  T    +++ C                
Sbjct: 25  HEFPQLLLLSSCKSVREIKQIHASIIKANT-TRSTTTLPIISLCTKITSLLQQDVHLADS 83

Query: 64  --DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPF 120
             ++ YA  +     +  V ++N +I+  S  ++    +  +Y  ML   + PD YT P+
Sbjct: 84  IQNLWYASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPY 143

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           LLK  ++  A     ++H H +K G  S++FV+N L+  Y + G ++    +FD     D
Sbjct: 144 LLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWD 203

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           +++W  +   Y ++    E    F  M         +T+V+VLSAC++L D  +GK+   
Sbjct: 204 LISWTTLIQAYSKMGYPSEAIAAFFRMN---CTADRMTLVVVLSACSQLGDFTLGKKILA 260

Query: 241 YVKE--CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           Y+      +  ++ L NAL DMY  CG                               Q 
Sbjct: 261 YMDHHLFDVHSDVFLGNALLDMYLKCG-------------------------------QP 289

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
            +ARQ F  MP ++ V W +MI G      F+EAL +FR MQT  ++PD  T+V +L +C
Sbjct: 290 HLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSC 349

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           ANLG LELG+WV +YIDKN +K D +V NAL+DMY KCG +++A  VF+ M  KD +++T
Sbjct: 350 ANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYT 409

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           AMIVG A++G  D++L +FS+M R  + PD VT VGVLSAC+H G+++EGR +F DM+  
Sbjct: 410 AMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRL 469

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           + ++P   HYGCMVDLLGRAG ++EA      MP+ P++ VWG+LLGAC++H   E+ E 
Sbjct: 470 YHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGET 529

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
             ++++E++P+ +  Y+L+ NIY++ NRW +  + R+ +    IKKTPGCS IE++G+VH
Sbjct: 530 VIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEVDGMVH 589

Query: 599 EFVAGDKSHPQTKEI 613
           EF  G+KSHP+++E+
Sbjct: 590 EFRKGEKSHPKSREM 604


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/622 (37%), Positives = 359/622 (57%), Gaps = 35/622 (5%)

Query: 101 LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY 160
           L+ + +L  +V+ + Y    +L       A+  G+ +H H++K  +  SV+++  LI  Y
Sbjct: 50  LLQMAILGREVKFEGYDS--ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLY 107

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
             C  +  ARG+FD   + +VV+W AM S Y +     E   LF EM R    P   T  
Sbjct: 108 NKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFA 167

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            +L++C      + G++ H    +     ++ + ++L DMYA                  
Sbjct: 168 TILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYA------------------ 209

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
                          G++  A   F  +PERD V  TA+I GY ++    EAL LFR++Q
Sbjct: 210 -------------KSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQ 256

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
              +  +  T  S+LTA + L AL  G+ V +++ ++   + + + N+LIDMY KCG+V 
Sbjct: 257 IEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVC 316

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTYVGVLSAC 459
            A+R+F  M  +   +W AM+VG + +G   + L++F  M   + + PD +TY+ VLS C
Sbjct: 317 YARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGC 376

Query: 460 THTGMVDEGREYFADMTI-QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           +H  + D G E F +M   + GIEP+  HYGC+VDLLGRAG + EA + IK MP  P + 
Sbjct: 377 SHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAA 436

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           +WG+LLG+CRVH D E+  +  +++LEL+P+N   YV+L N+YA+  +W++ R +R ++ 
Sbjct: 437 IWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQ 496

Query: 579 DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL 638
           ++ + K PG S +E++ +VH F A D +HP+ +E+  K+ E++   K  GY+PD+S V  
Sbjct: 497 EKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLY 556

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
           DV EE KE+ +  HSEKLA+AFGLI++  G TIR++KNLR+CVDCH  AK VS +Y R V
Sbjct: 557 DVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTV 616

Query: 699 IVRDKTRFHHFKHGSCSCKDYW 720
           I+RDK RFH+   G CSC DYW
Sbjct: 617 ILRDKNRFHNIVGGVCSCGDYW 638



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 199/402 (49%), Gaps = 45/402 (11%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNT 85
           ++ + +++H+  IK   L +  ++ +L+     C   GD +    +F ++P+ +V  W  
Sbjct: 77  AIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAR---GMFDEMPQRNVVSWTA 133

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           MI  YS+       + ++++ML+SD  P+++TF  +L      +  E G+++H   +K  
Sbjct: 134 MISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRN 193

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           ++S +FV ++L+  Y   G +  A G+F    + DVV   A+ SGY ++   +E  KLF 
Sbjct: 194 YESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFR 253

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           +++ +G+   SVT   VL+A + L  L+ GK+ H +V        ++L N+L DMY+ CG
Sbjct: 254 QLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCG 313

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            + +A  IF ++  +  ISW A++ GY   G                             
Sbjct: 314 NVCYARRIFDSMPERTCISWNAMLVGYSKHGMA--------------------------- 346

Query: 326 VNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALE---LGEWVKTYIDKNKVKN 381
               RE L LF+ M+  N ++PD  T +++L+ C++ G LE   L  +      K+ ++ 
Sbjct: 347 ----REVLELFKLMREENKVKPDSITYLAVLSGCSH-GQLEDMGLEIFYNMVNGKDGIEP 401

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           DI     ++D+  + G VE+A     + ++K  F  TA I G
Sbjct: 402 DIGHYGCVVDLLGRAGRVEEA----FDFIKKMPFVPTAAIWG 439


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/555 (39%), Positives = 324/555 (58%), Gaps = 31/555 (5%)

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           VD  R IF++  + D+V+WN + +G  R   + ET  +  EM    + P S T+  VL  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
            A+  D+  GK  H       +   + + ++L DMYA C                     
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKC--------------------- 348

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           T +V  Y          + F  + ERD + W ++I G ++   F E L  FR+M  + I+
Sbjct: 349 TRVVDSY----------RVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIK 398

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           P  ++  SI+ ACA+L  L LG+ +  YI +N    +IF+ ++L+DMY KCG++  A+++
Sbjct: 399 PKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQI 458

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F  M  +D  +WTAMI+G A++GH   ++++F QM    I P+ V ++ VL+AC+H G+V
Sbjct: 459 FDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLV 518

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           DE  +YF  MT+  GI P   HY  + DLLGRAG L EA + I  MP+ P   VW  LL 
Sbjct: 519 DEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLS 578

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           ACRVH++ +MAE  A +ILE+DP N   Y+LL NIY+A  RW    + R  +   GI+KT
Sbjct: 579 ACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKT 638

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
           P CS IE+   V+ F+AGD+SHP  ++I   ++ +   ++  GY+PD SEV  DV EE K
Sbjct: 639 PACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQK 698

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           +  V  HSE+LA+ FG+I++  G TIR+ KNLR+C DCH   K +S +  RE++VRD +R
Sbjct: 699 KYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSR 758

Query: 706 FHHFKHGSCSCKDYW 720
           FHHFK+G+CSC DYW
Sbjct: 759 FHHFKNGTCSCGDYW 773



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 135/594 (22%), Positives = 256/594 (43%), Gaps = 73/594 (12%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           SP ST      L+    + +S  Q +Q+H+Q +K    +   +   L  +  S    +  
Sbjct: 3   SPTSTEALVNSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIY--SHINLLHD 60

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           + ++F  +  P    W ++I+ Y+        +  ++ ML S + PD+  FP +LK    
Sbjct: 61  SLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAM 120

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA-RGIFDVSYKDDVVTWNA 186
            + +  G+ LH ++++ G D  ++  NAL++ Y     +  + R     S   D +T   
Sbjct: 121 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMT--- 177

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC------AKLKDLDVGKRA-H 239
                +R +       L G   RK    + +       +C      A++ ++D   R+ +
Sbjct: 178 -----ERTRSVRTASVLVGNQGRK---VSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEY 229

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
           R ++ C       L   + D+  +   +    +IF  +  KD++SW  I+ G    G   
Sbjct: 230 REMEACN------LGQQIKDISHSM-SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGL-- 280

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
                                        + E LT+ REM  +N++PD FT+ S+L   A
Sbjct: 281 -----------------------------YGETLTMVREMGGANLKPDSFTLSSVLPLIA 311

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
               +  G+ +     +  +  +++V ++LIDMY KC  V  + RVF  +  +D  +W +
Sbjct: 312 ENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNS 371

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           +I G   NG  D+ L  F QML A I P   ++  ++ AC H   +  G++    +T ++
Sbjct: 372 IIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYIT-RN 430

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA-EMAEM 538
           G + N      +VD+  + G++  A ++   M ++ + + W A++  C +H  A +  E+
Sbjct: 431 GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGCALHGHALDAIEL 489

Query: 539 AAKQILE-LDPDNEAVYVLLCNIYAACNRW----DNFRELRQMILDRGIKKTPG 587
             +   E ++P+    YV    +  AC+      + ++    M LD GI   PG
Sbjct: 490 FEQMKTEGIEPN----YVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGI--APG 537



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 134/324 (41%), Gaps = 55/324 (16%)

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           W ++I  Y       ++L  F  M  S + PD     S+L ACA L  L LGE +  YI 
Sbjct: 76  WKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYII 135

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQR-------VFREMLRKDKFTWTAMIVGLAING 428
           +  +  D++ GNAL++MY K   ++K+ R       V  EM  + +   TA ++   +  
Sbjct: 136 RVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVL---VGN 192

Query: 429 HGDKSLDM---------FSQMLRASIIPDEVTY-----VGVLSAC---------THTGMV 465
            G K  D+          S+   A ++  E+ Y        + AC         +H+  V
Sbjct: 193 QGRKVSDIEAFNYDVSCRSREFEAQVL--EIDYKPRSEYREMEACNLGQQIKDISHSMSV 250

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP---MKPNSIVWGA 522
           D  R+ F  M      E +   +  ++    R G   E L +++ M    +KP+S    +
Sbjct: 251 DSVRKIFEMMP-----EKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSS 305

Query: 523 LLGACR----VHRDAEMAEMAAKQILELDPDNEAVYVL--LCNIYAACNR-WDNFRELRQ 575
           +L        + +  E+   + +Q L+ +     VYV   L ++YA C R  D++R    
Sbjct: 306 VLPLIAENVDISKGKEIHGCSIRQGLDAE-----VYVASSLIDMYAKCTRVVDSYRVFTL 360

Query: 576 MILDRGIKKTPGCSMIEMNGVVHE 599
           +    GI      +    NG+  E
Sbjct: 361 LTERDGISWNSIIAGCVQNGLFDE 384


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/715 (35%), Positives = 387/715 (54%), Gaps = 74/715 (10%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQ+H+  ++ G     T  N LVT   ++ G +  A  +F       +  WNT+I   S+
Sbjct: 207 KQVHAFVLRNGDWRTFT-NNALVTMY-AKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQ 264

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL-KFGFDSSVF 151
            D  +  +L    ML+S VRP+  T   +L   +    +  GKE+H  VL       + F
Sbjct: 265 NDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSF 324

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD-ETRKLFGEMERK 210
           V  AL+  YC C + +  R +FD  ++  +  WNAM +GY R  +FD E  +LF EM  +
Sbjct: 325 VGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVR-NEFDYEAIELFVEMVFE 383

Query: 211 -GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
            G+ P SVT+  VL AC + +     +  H  V +     +  ++NAL DMY+       
Sbjct: 384 LGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYS------- 436

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
                                     G++++AR  F  M  +D V W  MI GY+   R 
Sbjct: 437 ------------------------RMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRH 472

Query: 330 REALTLFREMQTSN------------------IRPDEFTIVSILTACANLGALELGEWVK 371
            +AL L  +MQ                     ++P+  T++++L  CA L AL  G+ + 
Sbjct: 473 DDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIH 532

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            Y  K  +  D+ VG+AL+DMY KCG +  ++ VF +M  ++  TW  +I+   ++G G+
Sbjct: 533 AYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGE 592

Query: 432 KSLDMFSQMLRAS-----IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           ++L +F +M+        I P+EVTY+ + ++ +H+GMVDEG   F  M  +HGIEP   
Sbjct: 593 EALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSD 652

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLGACRVHRDAEMAEMAAKQILE 545
           HY C+VDLLGR+G + EA  +IK MP     +  W +LLGAC++H++ E+ E+AAK +  
Sbjct: 653 HYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFV 712

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           LDP+               +       L + + ++G++K PGCS IE    VH+F+AGD 
Sbjct: 713 LDPN-------------VLDYGTKQSMLGRKMKEKGVRKEPGCSWIEHGDEVHKFLAGDV 759

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           SHPQ+KE++  L+ ++  +K  GY+PD S V  +VGEE+KE  +  HSE+LA+AFGL+++
Sbjct: 760 SHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNT 819

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            PG TIR+ KNLR+C DCH   K +S + DRE+I+RD  RFHHF++G+CSC DYW
Sbjct: 820 SPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 219/462 (47%), Gaps = 49/462 (10%)

Query: 83  WNTMIKGYSRIDS-HKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           W + ++  ++  S     +  Y +M+ + V PDN+ FP +LK       +  GK+LH HV
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
            KFG      V N+L++ Y  CG++D AR +FD     D V+WN+M +   R ++++   
Sbjct: 112 FKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAV 171

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKL-KDLDVGKRAHRYV---KECKIVPNLILENAL 257
            LF  M  + V PTS T+V V  AC+ L   L +GK+ H +V    + +   N    NAL
Sbjct: 172 HLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTN----NAL 227

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
             MYA  G +  A  +F    +KD++SW  I++                 + + D     
Sbjct: 228 VTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIIS----------------SLSQND----- 266

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI-DK 376
                     RF EAL     M  S +RP+  T+ S+L AC++L  L  G+ +  ++   
Sbjct: 267 ----------RFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMN 316

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           N +  + FVG AL+DMYC C   EK + VF  M R+    W AMI G   N    +++++
Sbjct: 317 NDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIEL 376

Query: 437 FSQML-RASIIPDEVTYVGVLSACTH-TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           F +M+    + P+ VT   VL AC      +D  +E      ++ G E ++     ++D+
Sbjct: 377 FVEMVFELGLSPNSVTLSSVLPACVRCESFLD--KEGIHSCVVKWGFEKDKYVQNALMDM 434

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGA---CRVHRDA 533
             R G +  A  +  +M  K + + W  ++     C  H DA
Sbjct: 435 YSRMGRIEIARSIFGSMNRK-DIVSWNTMITGYVVCGRHDDA 475



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 179/380 (47%), Gaps = 45/380 (11%)

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILEN 255
           F +    +  M   GV P +     VL A A ++DL++GK+ H +V K  + +P  +  N
Sbjct: 66  FHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAV-PN 124

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           +L +MY  CG+                               +D AR+ FD++  RD V 
Sbjct: 125 SLVNMYGKCGD-------------------------------IDAARRVFDEITNRDDVS 153

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL-GALELGEWVKTYI 374
           W +MI+   R   +  A+ LFR M   N+ P  FT+VS+  AC+NL   L LG+ V  ++
Sbjct: 154 WNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFV 213

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            +N      F  NAL+ MY K G V +A+ +F     KD  +W  +I  L+ N   +++L
Sbjct: 214 LRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEAL 272

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MVD 493
                ML++ + P+ VT   VL AC+H  M+  G+E  A + + + +  N +  GC +VD
Sbjct: 273 LYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIEN-SFVGCALVD 331

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAAKQILE--LDPDN 550
           +        +   V   M  +    VW A++ G  R   D E  E+  + + E  L P++
Sbjct: 332 MYCNCKQPEKGRLVFDGM-FRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNS 390

Query: 551 EAVYVLLCNIYAACNRWDNF 570
               V L ++  AC R ++F
Sbjct: 391 ----VTLSSVLPACVRCESF 406



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 136/306 (44%), Gaps = 28/306 (9%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+++T  + L + +  CES    + IHS  +K G   +  VQN L+    S  G ++ A 
Sbjct: 388 PNSVTLSSVLPACVR-CESFLDKEGIHSCVVKWGFEKDKYVQNALMDM-YSRMGRIEIAR 445

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS---------DVRPDNYTFPF 120
            +F  + R  +  WNTMI GY     H + + +  DM +          D   DN  FP 
Sbjct: 446 SIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPL 505

Query: 121 ---------LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
                    +L G     A+  GKE+H + +K      V V +AL+  Y  CG ++++R 
Sbjct: 506 KPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRT 565

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-----VLPTSVTIVLVLSAC 226
           +F+     +V+TWN +   Y    + +E  KLF  M  +G     + P  VT + + ++ 
Sbjct: 566 VFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASL 625

Query: 227 AKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN--KDVI 283
           +    +D G      +K +  I P       L D+    G++  A  +   + +  K V 
Sbjct: 626 SHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVD 685

Query: 284 SWTAIV 289
           +W++++
Sbjct: 686 AWSSLL 691


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/571 (39%), Positives = 335/571 (58%), Gaps = 43/571 (7%)

Query: 154 NALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           N L+S +   G+V  AR +F    +   +V +WN M SG  R     E R +F  M  + 
Sbjct: 86  NTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPAR- 144

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
                                                 N I  NA+   +A  G+M  A 
Sbjct: 145 --------------------------------------NSISWNAMVSCFAHAGDMCAAE 166

Query: 272 EIFGNIKNKD-VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
           E F +  +K+  + WTA+V+GY++ G V+ A Q+F+ MP R  V W A++ GY++ +R  
Sbjct: 167 ECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAE 226

Query: 331 EALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
           +AL +F+ M + +++RP+E T+ S+L  C+NL AL  G  V  +  K  +   +  G +L
Sbjct: 227 DALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSL 286

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           + MYCKCGD++ A ++F EM  +D   W AMI G A +G G +++++F +M    + P+ 
Sbjct: 287 VSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNW 346

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509
           +T+V VL+AC HTGM D G + F  M   +GIE    HY CMVDLL RAG L  A+ +I+
Sbjct: 347 ITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIR 406

Query: 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
           +MP +P+   +G LL A RV+++ E AE AA +++E +P N   YV L NIYA  N+W +
Sbjct: 407 SMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWAD 466

Query: 570 FRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGY 629
              +R+ + D  + KTPG S +E+NGV+H F + D+ HPQ   I+ +L ++   +K +GY
Sbjct: 467 VSRVRRWMKDNAVVKTPGYSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGY 526

Query: 630 MPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKL 689
           +PD+     DV E  K + + +HSEKLA+AFGL+S+ PG+T+RI KNLR+C DCH  AKL
Sbjct: 527 VPDLDFALHDVDESLKVQMLMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKL 586

Query: 690 VSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +S + DRE+I+RD TRFHHF+ G CSC DYW
Sbjct: 587 ISKIEDREIILRDTTRFHHFRSGHCSCGDYW 617



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 158/369 (42%), Gaps = 63/369 (17%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           +F +IPRP    +NT++  +      +    ++  M  +     ++    +L G +R  A
Sbjct: 73  LFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWN--TMLSGLSRSGA 130

Query: 131 VEFGKELHC-----HVLKFGFDSSVFVQ-----------------------NALISTYCL 162
           V   + +       + + +    S F                          A++S Y  
Sbjct: 131 VGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMD 190

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVL 221
            G V+ A   F+      +V+WNA+ +GY +  + ++   +F  M R   V P   T+  
Sbjct: 191 SGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSS 250

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           VL  C+ L  L  G++ H++  +  +   +    +L  MY  CG++  A ++F  ++ +D
Sbjct: 251 VLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRD 310

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           VI+W A+++GY + G                        DG       REA+ LF +M++
Sbjct: 311 VIAWNAMISGYAHHG------------------------DG-------REAIELFEKMKS 339

Query: 342 SNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
             + P+  T V++LTAC + G  + G +  +   +   ++  +   + ++D+ C+ G +E
Sbjct: 340 QGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLE 399

Query: 401 KAQRVFREM 409
           +A  + R M
Sbjct: 400 RAVSLIRSM 408



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 1/185 (0%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFP 119
           + G ++ A + F  +P  S+  WN ++ GY +    ++ + ++  M++ +DVRP+  T  
Sbjct: 190 DSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLS 249

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L G +   A+ FG+++H    K      V    +L+S YC CG++D A  +F      
Sbjct: 250 SVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIR 309

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           DV+ WNAM SGY       E  +LF +M+ +GV P  +T V VL+AC      D G +  
Sbjct: 310 DVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCF 369

Query: 240 RYVKE 244
             ++E
Sbjct: 370 ERMQE 374


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/659 (36%), Positives = 368/659 (55%), Gaps = 53/659 (8%)

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF--PFLLKGFTRDIAVEFGKEL 137
           V +W    +  ++  S+ N    +LD +K    P N+ F  P L     +       K++
Sbjct: 117 VTIWFCSERNITKSSSNSN----FLDFMK----PKNHIFNHPTLQTLQQKCNNFNTLKQI 168

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDM--------ARGIFDVSYKDDVVTWNAMFS 189
           H  ++  G             TYCL   + +        A  IF+      +  +N + S
Sbjct: 169 HTQIITTGLS---------FQTYCLSHLIKISSKFNLPYAFKIFNYISNPTIFLYNTLIS 219

Query: 190 GYKRVKQFDETRKLFGEMER----KGVLPTSVTIVLVLSACAKLKD-LDVGKRAHRYVKE 244
                   ++    F    +    K + P S T   +  AC   +     G   H +V +
Sbjct: 220 SLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWFHYGPLLHTHVLK 279

Query: 245 CKIVP-NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
               P +  ++ +L + YA  G+M  +  IF  I   D+ +W  I+  Y           
Sbjct: 280 FLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSN 339

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
            FD   + D+ L               E+L LFR+MQ   IRP+E TIV++++AC+NLGA
Sbjct: 340 SFD---DADFSL---------------ESLYLFRDMQVIGIRPNEVTIVALISACSNLGA 381

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK--FTWTAMI 421
           +  G WV  ++ +NK+K + FVG A +DMY KCG +  A +VF +M   D+  F +TAMI
Sbjct: 382 VSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMI 441

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G A++G+G+++L+++ +M    ++PD  T+V  + AC+H G+V+EG E F  M   HG+
Sbjct: 442 GGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGV 501

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
           EP   HYGC++DLLGRAG L EA E + +MPMKPN+++W +LLGA R+H +  + E+A  
Sbjct: 502 EPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALT 561

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           +++EL+P+    YVLL N+YA+  R ++ + +R+++   G+ K PG S++E+ G +HEF+
Sbjct: 562 KLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFL 621

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
            GD+SHP +KEIYLK+ E+ S L+  G+    SE   D+ EEDKE  +  HSE+LA+AF 
Sbjct: 622 TGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFA 681

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LI+S   + IRI+KNLR+C DCH   KL+S+ Y RE+IVRD+ RFHHFK GSCSC DYW
Sbjct: 682 LIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 216/450 (48%), Gaps = 66/450 (14%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMK 66
           + P + +     L +  + C + + LKQIH+Q I  GL       + L+    S K ++ 
Sbjct: 140 MKPKNHIFNHPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLIKI--SSKFNLP 197

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLD-------MLKSDVRPDNYTFP 119
           YA K+F  I  P++ L+NT+I   S + +  N   I+L        +   +++P+++TFP
Sbjct: 198 YAFKIFNYISNPTIFLYNTLI---SSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFP 254

Query: 120 FLLKGFTRDIA-VEFGKELHCHVLKF---GFDSSVFVQNALISTYCLCGEVDMARGIFDV 175
            L K    + +   +G  LH HVLKF    FD+  FVQ +L++ Y   G++ ++R IFD 
Sbjct: 255 SLFKACCSNQSWFHYGPLLHTHVLKFLQPPFDN--FVQASLLNFYAKYGKMCVSRYIFDR 312

Query: 176 SYKDDVVTWNAMFSGYKRVKQ-------FD------ETRKLFGEMERKGVLPTSVTIVLV 222
             + D+ TWN + + Y R          FD      E+  LF +M+  G+ P  VTIV +
Sbjct: 313 INEPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVAL 372

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           +SAC+ L  +  G   H +V   KI  N  +  A  DMY+ CG +  A ++F        
Sbjct: 373 ISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVF-------- 424

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
                                  D+MPE  RD   +TAMI G+       +AL L+R+M+
Sbjct: 425 -----------------------DKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMK 461

Query: 341 TSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
              + PD  T V  + AC+++G +E G E  K+  + + V+  +     LID+  + G +
Sbjct: 462 FKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRL 521

Query: 400 EKAQRVFREM-LRKDKFTWTAMIVGLAING 428
           ++A+    +M ++ +   W +++    I+G
Sbjct: 522 KEAEEWLADMPMKPNAVLWRSLLGAARIHG 551



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 147/332 (44%), Gaps = 28/332 (8%)

Query: 50  VQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI-------------DSH 96
           VQ  L+ F  ++ G M  +  +F +I  P +  WN ++  Y+R              D  
Sbjct: 289 VQASLLNFY-AKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDADFS 347

Query: 97  KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
              + ++ DM    +RP+  T   L+   +   AV  G  +HC VL+     + FV  A 
Sbjct: 348 LESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAF 407

Query: 157 ISTYCLCGEVDMARGIFDVSYKDD--VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           +  Y  CG +++A  +FD   ++D     + AM  G+      ++  +L+ +M+ KG++P
Sbjct: 408 VDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVP 467

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV-PNLILENALTDMYAACGEMGFALEI 273
            S T V+ + AC+ +  ++ G    + +KE   V P L     L D+    G +  A E 
Sbjct: 468 DSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEW 527

Query: 274 FGNIKNK-DVISWTAI-----VTGYINRGQVDMARQYFDQMPER--DYVLWTAMIDGYLR 325
             ++  K + + W ++     + G +  G+V + +   +  PE   +YVL + M     R
Sbjct: 528 LADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTK-LIELEPETSGNYVLLSNMYASVGR 586

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
           VN  +    L +    + +    F++V I  A
Sbjct: 587 VNDVKRVRKLMKHHGVNKL--PGFSLVEIKGA 616


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/598 (35%), Positives = 347/598 (58%), Gaps = 3/598 (0%)

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
            R  +     ELH  ++K GFD S  + N L+  Y  CG +  A  +FD     D V+W 
Sbjct: 14  ARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWA 73

Query: 186 AMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           ++ + + +      T  +   M    G+ P       ++ AC+ L  L +GK+ H     
Sbjct: 74  SILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFML 133

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                + +++++L DMY  CG+   A  +F +I  K+ +SWT++++GY   G+   A   
Sbjct: 134 SXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDL 193

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-PDEFTIVSILTACANLGA 363
           F Q P R+   WTA+I G ++      + +LF EM+   I   D   + S++  CANL  
Sbjct: 194 FLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLAL 253

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           LELG+ +   +     ++ +F+ NAL+DMY KC D+  A+ +F  M RKD  +WT++IVG
Sbjct: 254 LELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVG 313

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            A +G  +++L ++ +M+ + I P+EVT+VG+L AC+H G+V  GRE F  MT  + I P
Sbjct: 314 TAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINP 373

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
           +  HY C++DLL R+GHL+EA  ++  +P KP+   W +LL AC  H + EM    A ++
Sbjct: 374 SLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRV 433

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           L+L P++ + Y+LL N+YA    W +  ++R+++    ++K PG S I+       F AG
Sbjct: 434 LDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAG 493

Query: 604 DK-SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
           +   HP   EI   L ++ ++++  GY+P+ S V  D+ +++KE+ ++ HSE+LA+A+GL
Sbjct: 494 ESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGL 553

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + + PG  IRIVKNLR+C DCH + K +S +  RE++VRD TR+HHFK G CSC D+W
Sbjct: 554 LKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 192/430 (44%), Gaps = 67/430 (15%)

Query: 27  ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
           +S     ++HSQ IK G   +  + N L+     + G +  A ++F ++P      W ++
Sbjct: 17  QSASAAGELHSQIIKAGFDKSSLLSNTLLDVY-GKCGLIPQALQLFDEMPNRDHVSWASI 75

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           +  +++    +  + +   M   D ++PD++ F  +++  +    +  GK++H   +   
Sbjct: 76  LTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSX 135

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE------ 199
           F     V+++LI  Y  CG+ D AR +FD     + V+W +M SGY R  +  E      
Sbjct: 136 FCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFL 195

Query: 200 -------------------------TRKLFGEMERKGV-LPTSVTIVLVLSACAKLKDLD 233
                                    +  LF EM R+G+ +   + +  V+  CA L  L+
Sbjct: 196 QAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLE 255

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
           +GK+ H  V        L + NAL DMYA C ++  A +IF  +  KDVISWT+I+ G  
Sbjct: 256 LGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTA 315

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
             G+ +                               EALTL+ EM  S I+P+E T V 
Sbjct: 316 QHGKAE-------------------------------EALTLYDEMVLSRIKPNEVTFVG 344

Query: 354 ILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LR 411
           +L AC++ G +  G E  ++      +   +     L+D+  + G +++A+ +  ++  +
Sbjct: 345 LLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFK 404

Query: 412 KDKFTWTAMI 421
            D+ TW +++
Sbjct: 405 PDEPTWASLL 414



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 166/398 (41%), Gaps = 68/398 (17%)

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L  CA+ +        H  + +     + +L N L D+Y  CG +  AL++F  + N+D 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +SW +I+T + N+  +                               R  L++   M T 
Sbjct: 70  VSWASILTAH-NKALIP------------------------------RRTLSMLNTMFTH 98

Query: 343 N-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
           + ++PD F    I+ AC++LG L LG+ V      +   +D  V ++LIDMY KCG  ++
Sbjct: 99  DGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDE 158

Query: 402 AQRVFREMLRKDK-------------------------------FTWTAMIVGLAINGHG 430
           A+ VF  +L K+                                F+WTA+I GL  +GHG
Sbjct: 159 ARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHG 218

Query: 431 DKSLDMFSQMLRASI-IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
             S  +F++M R  I I D +    V+  C +  +++ G++    + I  G E       
Sbjct: 219 IYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHG-LVIALGFESCLFISN 277

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILELDP 548
            +VD+  +   +  A ++   MP K + I W +++     H  AE A  +  + +L    
Sbjct: 278 ALVDMYAKCSDILAAKDIFYRMPRK-DVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIK 336

Query: 549 DNEAVYVLLCNIYAACNRWDNFREL-RQMILDRGIKKT 585
            NE  +V L    +        REL R M  D  I  +
Sbjct: 337 PNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPS 374



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 146/343 (42%), Gaps = 44/343 (12%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           +  C S+  L   KQ+H++ +      +  V++ L+    ++ G    A  VF  I   +
Sbjct: 112 VRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMY-TKCGQPDEARAVFDSILFKN 170

Query: 80  VCLWNTMIKGYSRIDSH--------------------------KNGVLIYLDMLKSDVRP 113
              W +MI GY+R                              ++G  IY   L +++R 
Sbjct: 171 SVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRR 230

Query: 114 DNYTF--PFLLKGFTRDIA----VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVD 167
           +      P +L       A    +E GK++H  V+  GF+S +F+ NAL+  Y  C ++ 
Sbjct: 231 EGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDIL 290

Query: 168 MARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227
            A+ IF    + DV++W ++  G  +  + +E   L+ EM    + P  VT V +L AC+
Sbjct: 291 AAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACS 350

Query: 228 KLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISW 285
               +  G+   R +  +  I P+L     L D+ +  G +  A  +   I  K D  +W
Sbjct: 351 HAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTW 410

Query: 286 TAIVTGYINRGQVDM----ARQYFDQMPE--RDYVLWTAMIDG 322
            ++++  +    ++M    A +  D  PE    Y+L + +  G
Sbjct: 411 ASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAG 453


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/655 (36%), Positives = 363/655 (55%), Gaps = 40/655 (6%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV-----RPDNYTFPFLLKGF 125
           +F  + + +V  W  ++ GY     H   VL  L + K+ +     RP+ Y F  ++   
Sbjct: 84  LFDGMRKRNVVSWGALMAGYF----HNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSC 139

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
           +    V  G + H + LK G     +V+NALI  Y    +V  A  ++      DV ++N
Sbjct: 140 SDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYN 199

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
            + +G        E  ++   M  + ++  +VT V     C+ LKDL +G + H  +   
Sbjct: 200 IIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRT 259

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
               +  + +A+ DMY  CG +  A ++F  ++ K+V+SWTAI+  Y   G         
Sbjct: 260 GAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGC-------- 311

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
                                  F EAL  F EM+   + P+E+T   +L +CA + AL 
Sbjct: 312 -----------------------FEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALG 348

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
            G+ + T I K+  ++ I VGNALI+MY K G +E A +VF EM+ +D  TW+AMI GL+
Sbjct: 349 HGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLS 408

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            +G G ++L +F +ML A   P  VT+VGVLSAC H G V EG  Y   +  Q GIEP  
Sbjct: 409 HHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGV 468

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HY C+V LL +AG L+EA   +K+ P+K + + W  LL AC VH++  + +  A+ +L+
Sbjct: 469 EHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQ 528

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           +DP +   Y+LL N+YA   RWD   ++R+++ +R +KK PG S IE+   +H FV+  K
Sbjct: 529 MDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGK 588

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISS 665
           +HP++ +IY K+ E+ + ++ +GY+PDI+ VF DV +E K   V  HSEKLA+A+GL+ +
Sbjct: 589 THPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKT 648

Query: 666 GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             G  IR++KNLRMCVDCH   KL+S V +R +IVRD  RFH F  G CSC DYW
Sbjct: 649 PSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 204/429 (47%), Gaps = 46/429 (10%)

Query: 23  IETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           I +C    Q+    Q H   +K GL+ +  V+N L+    S + D+K A  V+ ++P   
Sbjct: 136 ISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMY-SRRSDVKGAMSVWYEVPGLD 194

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLD-MLKSDVRPDNYTF--PFLLKGFTRDIAVEFGKE 136
           V  +N +I G    + + +  L  LD M+   +  DN T+   F L    +D+    G +
Sbjct: 195 VFSYNIIINGLLE-NGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDL--RLGLQ 251

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +HC + + G +   FV +A+I  Y  CG +  AR +F+     +VV+W A+ + Y +   
Sbjct: 252 VHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGC 311

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
           F+E    F EME  G+LP   T  ++L++CA +  L  GK  H  +K+     ++I+ NA
Sbjct: 312 FEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNA 371

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L +MY+  G +  A ++F  +  +D I+W+A++ G  + G                    
Sbjct: 372 LINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHG-------------------- 411

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYID 375
                        REAL +F+EM  +   P   T V +L+ACA+LG+++ G  ++   + 
Sbjct: 412 -----------LGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMK 460

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN---GHGD 431
           +  ++  +     ++ + CK G +++A+   +   ++ D   W  ++    ++   G G 
Sbjct: 461 QTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGK 520

Query: 432 KSLDMFSQM 440
           K  ++  QM
Sbjct: 521 KVAELVLQM 529



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 136/264 (51%), Gaps = 4/264 (1%)

Query: 265 GEMGFALEIFGNIKNKD-VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY 323
           G+M  A  I  N   KD ++   +++  Y    Q+ +AR  FD M +R+ V W A++ GY
Sbjct: 44  GKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGY 103

Query: 324 LRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
                  E L LF+ M + + +RP+E+   +I+++C++ G +  G     Y  K+ +   
Sbjct: 104 FHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFH 163

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
            +V NALI MY +  DV+ A  V+ E+   D F++  +I GL  NG+  ++L++  +M+ 
Sbjct: 164 QYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVD 223

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
             I+ D VTYV     C+H   +  G +    M  + G E +      ++D+ G+ G++ 
Sbjct: 224 ECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRM-FRTGAEYDSFVSSAIIDMYGKCGNIL 282

Query: 503 EALEVIKNMPMKPNSIVWGALLGA 526
            A +V   +  K N + W A+L A
Sbjct: 283 NARKVFNRLQTK-NVVSWTAILAA 305


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/561 (40%), Positives = 333/561 (59%), Gaps = 35/561 (6%)

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM--ERKGVLPTSVTIVL 221
           G++  A  I +     +    N M   Y +     +   LF  M  +     P   T   
Sbjct: 42  GDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPF 101

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L +CA+LK   VGK+ H  + +  +  +  + N L  MY++CG+ G A ++FG      
Sbjct: 102 LLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFG------ 155

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
                                    +M +RD V WT+MIDG++  +R  EA+ LF EM  
Sbjct: 156 -------------------------KMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVE 190

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             + P+E T+VS+L ACA+ GA+ +G  V+  I++ K+  +  V  ALIDMY KCG +  
Sbjct: 191 DGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGS 250

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A++VF  ++ KD F WTAMI GLA +G  ++++ +F QM    + PDE T   VLSAC +
Sbjct: 251 ARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRN 310

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
            G   EG  YF  M  ++GI+P   HYGCMVDLL R GHL+EA E I+ MP++P+ ++W 
Sbjct: 311 AGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWR 370

Query: 522 ALLGACRVHRDAEMAE--MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
            L+ A +VH D + +E  M  + +L++D D+   YVLL N+YA+  +W +  ++R+++  
Sbjct: 371 TLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQ 430

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
           +G+ K PGCS IE++G+VHEF AGD  H + ++IY KLDE+   LK  GY P +SEV L+
Sbjct: 431 KGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLE 490

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           +  ++K   +  HSEKLA+AFGLI + PG  IRIVKNLR C DCH + KL+S +Y +++I
Sbjct: 491 IDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDII 550

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           VRD+ RFHHF +G CSCKDYW
Sbjct: 551 VRDRIRFHHFINGDCSCKDYW 571



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/415 (31%), Positives = 200/415 (48%), Gaps = 43/415 (10%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNK----LVTFCC-SEKGDMKYACKVFRKIPRPSVCL 82
           S+ Q  Q+H+Q +K     +P  Q +    L TF   S  GD+ YA  +   +   +   
Sbjct: 5   SLSQAMQLHAQILKS---PDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFF 61

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDML--KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            NTMI+ YS+       + ++L ML   +  RPD +T+PFLLK   R      GK+LH  
Sbjct: 62  HNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGL 121

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           + K G +S  +V N LI  Y  CG+   A  +F      DVV+W +M  G+    +  E 
Sbjct: 122 IYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEA 181

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
            +LF EM   GV P   T+V VL ACA    + +G+R    ++E KI     +  AL DM
Sbjct: 182 IRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDM 241

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           YA CG +G A ++F  I NKDV +WTA+++G  N G  +                     
Sbjct: 242 YAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCE--------------------- 280

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKV 379
                     EA+TLF +M++  +RPDE T+ ++L+AC N G    G  +  +   K  +
Sbjct: 281 ----------EAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGI 330

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKS 433
           K  I     ++D+  + G +++A+   R+M +  D   W  +I    ++G  D+S
Sbjct: 331 KPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRS 385


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/700 (36%), Positives = 380/700 (54%), Gaps = 40/700 (5%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           + TC  +  L   +++H   I+ G  ++  V N L+T    + GD+  A  VF ++PR  
Sbjct: 202 LRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYV-KCGDIFSARLVFDRMPRRD 260

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
              WN MI GY   D    G+ ++  M +  V PD  T   ++           G+E+H 
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHG 320

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
           +V+K GF + V V N+LI  +   G  D A  +F      D+V+W AM SGY++    ++
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEK 380

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             + +  ME +GV+P  +TI  VLSACA L  LD G   H +     +   +I+ N+L D
Sbjct: 381 AVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLID 440

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY+ C  +  ALE+F  I                               P ++ + WT++
Sbjct: 441 MYSKCRCIDKALEVFHRI-------------------------------PNKNVISWTSI 469

Query: 320 IDGYLRVN-RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           I G LR+N R  EAL  F++M  S ++P+  T+VS+L+ACA +GAL  G+ +  +  +  
Sbjct: 470 ILG-LRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +  D F+ NAL+DMY +CG +E A   F     KD  +W  ++ G A  G G  ++++F 
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFH 586

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M+ + + PDE+T+  +L AC+ +GMV +G EYF  M  +  I PN  HY  +VDLLGRA
Sbjct: 587 KMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRA 646

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G L +A E IK MP+ P+  +WGALL ACR++++ E+ E+AA+ I E+D  +   Y+LLC
Sbjct: 647 GRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLC 706

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           N+YA   +WD    +R+++ +  +   PGCS +E+ G VH F+ GD  HPQ KEI   L+
Sbjct: 707 NLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLE 766

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
                ++  G          D+ +  K      HSE+LA+AFGLI++ PG  I + KNL 
Sbjct: 767 GFYEKMEATGLSMSKDSRRDDI-DASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLY 825

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           MC +CH   K +S V  R + VRD  +FHHFK G CSC D
Sbjct: 826 MCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 175/564 (31%), Positives = 280/564 (49%), Gaps = 57/564 (10%)

Query: 14  TQETPLISPIETCE---SMHQLKQIHSQTIK----LGLLTNPTVQNKLVTFCCSEKGDMK 66
            +E   I+ +  CE   +  +  ++HS   K    LG+     + +  V F     GD+ 
Sbjct: 92  VEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRF-----GDLV 146

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--G 124
            A  VF K+    +  WN ++ GY++       + +Y  ML   +RPD YTFP +L+  G
Sbjct: 147 EAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCG 206

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
              D+A   G+E+H HV+++GF+S V V NALI+ Y  CG++  AR +FD   + D ++W
Sbjct: 207 GLPDLAR--GREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISW 264

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           NAM SGY       E  +LF  M    V P  +T+  V+SAC  L D  +G+  H YV +
Sbjct: 265 NAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIK 324

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
              V  + + N+L  M+++ G    A  +F  ++ KD++SWTA+++GY   G        
Sbjct: 325 TGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNG-------- 376

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
              +PE+                    A+  +  M+   + PDE TI S+L+ACA LG L
Sbjct: 377 ---LPEK--------------------AVETYTIMEHEGVVPDEITIASVLSACAGLGLL 413

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
           + G  +  + D+  + + + V N+LIDMY KC  ++KA  VF  +  K+  +WT++I+GL
Sbjct: 414 DKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL 473

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
            +N    ++L  F QM+  S+ P+ VT V VLSAC   G +  G+E  A   ++ G+  +
Sbjct: 474 RLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAH-ALRTGLGFD 531

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL-GACRVHRDAEMAEMAAKQI 543
                 ++D+  R G +  A     +      S  W  LL G  +  +     E+  K I
Sbjct: 532 GFLPNALLDMYVRCGRMEPAWNQFNSCEKDVAS--WNILLTGYAQQGKGGLAVELFHKMI 589

Query: 544 -LELDPDNEAVYVLLCNIYAACNR 566
             +++PD      LLC    AC+R
Sbjct: 590 ESDVNPDEITFTSLLC----ACSR 609



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 145/470 (30%), Positives = 223/470 (47%), Gaps = 43/470 (9%)

Query: 101 LIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159
           LI+LD ++   V  +  T+  LL+      A   G  +H +V K      V + NAL+S 
Sbjct: 79  LIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSM 138

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI 219
           +   G++  A  +F    + D+ +WN +  GY +   FDE   L+  M   G+ P   T 
Sbjct: 139 FVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTF 198

Query: 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
             VL  C  L DL  G+  H +V       ++ + NAL  MY  CG              
Sbjct: 199 PCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCG-------------- 244

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
            D+ S                AR  FD+MP RD + W AMI GY   +   E L LF  M
Sbjct: 245 -DIFS----------------ARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMM 287

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
           +   + PD  T+ S+++AC  LG   LG  V  Y+ K     ++ V N+LI M+   G  
Sbjct: 288 REFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCW 347

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           ++A+ VF +M  KD  +WTAMI G   NG  +K+++ ++ M    ++PDE+T   VLSAC
Sbjct: 348 DEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSAC 407

Query: 460 THTGMVDEG--REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
              G++D+G     FAD T   G+         ++D+  +   +++ALEV   +P K N 
Sbjct: 408 AGLGLLDKGIMLHEFADRT---GLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNK-NV 463

Query: 518 IVWGALLGACRV-HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
           I W +++   R+ +R  E      + IL L P++    V L ++ +AC R
Sbjct: 464 ISWTSIILGLRLNYRSFEALFFFQQMILSLKPNS----VTLVSVLSACAR 509



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 180/418 (43%), Gaps = 45/418 (10%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV----TFCCSEKGDM 65
           P  +T  T +IS  E        +++H   IK G +   +V N L+    +  C ++ +M
Sbjct: 294 PDLMTM-TSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEM 352

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
                VF K+    +  W  MI GY +    +  V  Y  M    V PD  T   +L   
Sbjct: 353 -----VFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSAC 407

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
                ++ G  LH    + G  S V V N+LI  Y  C  +D A  +F      +V++W 
Sbjct: 408 AGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWT 467

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           ++  G +   +  E    F +M    + P SVT+V VLSACA++  L  GK  H +    
Sbjct: 468 SIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRT 526

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
            +  +  L NAL DMY  CG M  A   F N   KDV SW  ++TGY  +G+  +A + F
Sbjct: 527 GLGFDGFLPNALLDMYVRCGRMEPAWNQF-NSCEKDVASWNILLTGYAQQGKGGLAVELF 585

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
            +M E D                               + PDE T  S+L AC+  G + 
Sbjct: 586 HKMIESD-------------------------------VNPDEITFTSLLCACSRSGMVT 614

Query: 366 LG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            G E+ ++   K  +  ++    +++D+  + G +E A    ++M +  D   W A++
Sbjct: 615 DGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALL 672



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 2/198 (1%)

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
             +AL     MQ   +  +E T +++L  C    A   G  V +Y+ K   +  + +GNA
Sbjct: 75  LEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNA 134

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           L+ M+ + GD+ +A  VF +M  +D F+W  ++ G A  G+ D++L+++ +ML   I PD
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             T+  VL  C     +  GRE    + I++G E +      ++ +  + G +  A  V 
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHV-IRYGFESDVDVVNALITMYVKCGDIFSARLVF 253

Query: 509 KNMPMKPNSIVWGALLGA 526
             MP + + I W A++  
Sbjct: 254 DRMPRR-DRISWNAMISG 270


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/661 (35%), Positives = 373/661 (56%), Gaps = 36/661 (5%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           ++  +K A ++  +I +PS  +++T+I+   +    + G  ++  +  S   P  +    
Sbjct: 51  QQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNR 110

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           LL+ + +  ++   ++L   +     +  +   N LIS Y   G +  A+ +FD   + D
Sbjct: 111 LLEMYAKCDSLMDSQKLFDEMP----ERDLCSWNILISGYAKMGLLQEAKSLFDKMPERD 166

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
             +W AM SGY R  + +E  +LF  M+R         T+   L+A A +  L +GK  H
Sbjct: 167 NFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIH 226

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
            Y+    +  + ++ +AL+DMY  CG +  A  IF  + ++D+++W              
Sbjct: 227 GYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTW-------------- 272

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
                            TAMID Y +  R +E   LF ++  S IRP+EFT   +L ACA
Sbjct: 273 -----------------TAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACA 315

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
           N  + ELG+ V  Y+ +       F  +AL+ MY KCG++  A+RVF+E  + D F+WT+
Sbjct: 316 NQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTS 375

Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           +I G A NG  D+++  F  ++++   PD +T+VGVLSAC H G+VD+G +YF  +  Q+
Sbjct: 376 LIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQY 435

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           G+     HY C++DLL R+G  +EA  +I  M MKP+  +W +LLG CR+H + ++A+ A
Sbjct: 436 GLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRA 495

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
           A+ + E++P+N A YV L NIYA    W    ++R+ + DRG+ K PG S I +   VH 
Sbjct: 496 AEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHV 555

Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA 659
           F+ GD SHP++KEI   L +++  +K  G++PD + V  DV +E KE+ +  HSEKLA+A
Sbjct: 556 FLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVA 615

Query: 660 FGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
           FG+IS+  G  I++ KNLR CVDCH   K +S + +R++IVRD  RFH F+ G CSC+DY
Sbjct: 616 FGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDY 675

Query: 720 W 720
           W
Sbjct: 676 W 676



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 190/342 (55%), Gaps = 12/342 (3%)

Query: 195 KQFDETRKLFGEMER-KGVL--------PTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           K+FDE   +  +  R K  L        P++     ++ +C K + L  GK+ H+++K  
Sbjct: 40  KRFDEAIHILCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLS 99

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
             VP L + N L +MYA C  +  + ++F  +  +D+ SW  +++GY   G +  A+  F
Sbjct: 100 GFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLF 159

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACANLGAL 364
           D+MPERD   WTAMI GY+R +R  EAL LFR M+ S N + ++FT+ S L A A +  L
Sbjct: 160 DKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCL 219

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
            +G+ +  YI +  + +D  V +AL DMY KCG +E+A+ +F +M+ +D  TWTAMI   
Sbjct: 220 RIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRY 279

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
             +G   +  D+F+ +LR+ I P+E T+ GVL+AC +    + G++    MT + G +P 
Sbjct: 280 FQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMT-RVGFDPF 338

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
                 +V +  + G++  A  V K  P +P+   W +L+  
Sbjct: 339 SFAASALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAG 379


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/665 (35%), Positives = 352/665 (52%), Gaps = 44/665 (6%)

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
           SH N +  +L  +     PD +  P  LK      A    + LH   +  G     FV +
Sbjct: 2   SHSNSLYHFLRHVS--FPPDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVAS 56

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           +L+ +Y   G    AR +FD   + +VV W+A+ +GY      +    L  +M   GV P
Sbjct: 57  SLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEP 116

Query: 215 TSVT-----------------------------------IVLVLSACAKLKDLDVGKRAH 239
             +T                                   +   LSA   +K++ VGK+ H
Sbjct: 117 NVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVH 176

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
            YV +     +  +  AL DMY  CG     + +F    + DV S  A+V G     QV 
Sbjct: 177 GYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVS 236

Query: 300 MA----RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
            A    R++  +  E + V WT+++   ++  R  EA+ LFR MQ+  + P+  TI  +L
Sbjct: 237 EALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVL 296

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
            A AN+ AL  G     +  +    +D++VG+AL+DMY KCG    A+ +F  M  ++  
Sbjct: 297 PAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVV 356

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           +W AMI G A++G    ++ +F  M +    PD VT+  VL AC+  G+ +EGR YF +M
Sbjct: 357 SWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEM 416

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535
              HGI P   HY CMV LLGR+G L+EA ++I  MP +P+S +WG+LLG+CRV+ +  +
Sbjct: 417 QQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLL 476

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
           AE+AA+++ +L+P N   YVLL NIYA+   WD    +R  + + G+KK  GCS IE+  
Sbjct: 477 AEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKN 536

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
            VH  +AGD SHP    I  KL+++T ++  +G+ P    V  DV E++K+  +  HSEK
Sbjct: 537 KVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEK 596

Query: 656 LAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715
           LA+A GLIS+ PG  +R++KNLR+C DCH   K +S    RE+ VRD  RFHHFK G CS
Sbjct: 597 LAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCS 656

Query: 716 CKDYW 720
           C DYW
Sbjct: 657 CGDYW 661



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 156/399 (39%), Gaps = 75/399 (18%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L S +++C +    + +H+  +  GL  +P V + L+       G    A  VF ++P  
Sbjct: 23  LPSALKSCPAQPLARALHAAAVVSGLAEDPFVASSLL-HSYIRLGATGAARSVFDRMPEK 81

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR----------- 127
           +V  W+ +I GYS     +    +   M  + V P+  T+  L+ G  R           
Sbjct: 82  NVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTAL 141

Query: 128 -----------------------DIA-VEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
                                  D+  V  GK++H +V+K G      V  ALI  Y  C
Sbjct: 142 VRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKC 201

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE----------------- 206
           G  D    +F  S   DV + NA+ +G  R  Q  E   LF E                 
Sbjct: 202 GRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIV 261

Query: 207 ------------------MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
                             M+  GV P SVTI  VL A A +  L  G+ AH +      +
Sbjct: 262 ACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFL 321

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            ++ + +AL DMYA CG+   A  IF  + +++V+SW A++ GY   G    A Q F  M
Sbjct: 322 HDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSM 381

Query: 309 ----PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
                + D V +T ++    +     E    F EMQ  +
Sbjct: 382 QKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGH 420


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/570 (40%), Positives = 337/570 (59%), Gaps = 36/570 (6%)

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
           F+ N LI+ Y   G +  A+ +FD     +VV+W  M S Y   K  D+  +    M R+
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           GV P   T   VL AC  L +L   ++ H  + +  +  ++ + +AL D+Y+  GE+   
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGEL--- 114

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
                                       + A + FD+M   D V+W+++I G+ + +   
Sbjct: 115 ----------------------------ENALRVFDEMVTGDLVVWSSIIAGFAQNSDGD 146

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           EAL LF+ M+ +     + T+ S+L AC  L  LELG  V  ++   K   D+ + NAL+
Sbjct: 147 EALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHV--LKYDQDLILNNALL 204

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMYCKCG +E A  VF  M+ KD  +W+ MI GLA NG+  ++L +F  M    I P+ V
Sbjct: 205 DMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYV 264

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T VGVL AC+H G+V+EG  YF  M    GI+P   HYGCM+DLLGRAG L+EA+++I  
Sbjct: 265 TIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINE 324

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           M  +P+++ W ALL ACRVHR+ ++A  AAKQIL LDP +   YVLL NIYA   RW++ 
Sbjct: 325 MECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDV 384

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
            E+R+ + +RGIKK PGCS IE++  +H F+ GD+SHPQ +EI ++L+++   L  VGY+
Sbjct: 385 AEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYV 444

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           PD + V  D+  E  + ++  HSEKLA+ FGL+S   G TIRI KNLR+C DCH   KL+
Sbjct: 445 PDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLL 504

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + +  R +++RD  R+HHF+ G CSC D+W
Sbjct: 505 AKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 189/396 (47%), Gaps = 45/396 (11%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G +  A  VF K+P  +V  W TMI  YS    +   +   + ML+  VRP+ +T+  +L
Sbjct: 14  GLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVL 73

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           +       +   ++LHC ++K G DS VFV++ALI  Y   GE++ A  +FD     D+V
Sbjct: 74  RACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLV 130

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
            W+++ +G+ +    DE  +LF  M+R G L    T+  VL AC  L  L++G++ H +V
Sbjct: 131 VWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHV 190

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
              K   +LIL NAL DMY  CG +  A  +F  +  KDVISW+ ++ G    G      
Sbjct: 191 --LKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYS---- 244

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                      +EAL LF  M+   I+P+  TIV +L AC++ G
Sbjct: 245 ---------------------------KEALKLFESMKVLGIKPNYVTIVGVLFACSHAG 277

Query: 363 ALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTW 417
            +E G +   Y    K    I  G      +ID+  + G + +A  +  EM    D  TW
Sbjct: 278 LVEEGLY---YFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTW 334

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            A++    ++ + D ++    Q+LR     D  TYV
Sbjct: 335 RALLNACRVHRNVDVAIHAAKQILRLD-PQDAGTYV 369



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 160/335 (47%), Gaps = 14/335 (4%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S +  C+ +  L+Q+H   IK+GL ++  V++ L+    S  G+++ A +VF ++    +
Sbjct: 71  SVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALID-VYSRWGELENALRVFDEMVTGDL 129

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            +W+++I G+++       + ++  M ++       T   +L+  T    +E G+++H H
Sbjct: 130 VVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVH 189

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           VLK+  D  + + NAL+  YC CG ++ A  +F    + DV++W+ M +G  +     E 
Sbjct: 190 VLKY--DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEA 247

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILENALTD 259
            KLF  M+  G+ P  VTIV VL AC+    ++ G      +KE   I P       + D
Sbjct: 248 LKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMID 307

Query: 260 MYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERD------ 312
           +    G +  A+++   ++   D ++W A++        VD+A     Q+   D      
Sbjct: 308 LLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGT 367

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           YVL + +   Y    R+ +   + R M    I+ +
Sbjct: 368 YVLLSNI---YANTQRWNDVAEVRRTMTNRGIKKE 399


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/688 (36%), Positives = 389/688 (56%), Gaps = 43/688 (6%)

Query: 63  GDMKYACKVFRKIPRP--SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS----------- 109
           GD+  A KVF   P P  ++  WN M+  Y      ++ +L++  M +            
Sbjct: 33  GDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISG 92

Query: 110 --------------DVRPDN--YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
                         DV P+    ++  +++G+ ++  VE  ++L   + +     +V   
Sbjct: 93  YVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPR----RNVVSW 148

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
             +I        +D A+ +FD+  + DVV    M  GY +V + DE R+LF EM+ + V 
Sbjct: 149 TVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVF 208

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
               T   ++S  AK   +DV ++    + E     N +   A+   Y   G M  A E+
Sbjct: 209 ----TWTTMVSGYAKNGRVDVARKLFEVMPE----RNEVSWTAMLMGYTQSGRMKEAFEL 260

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333
           F  +  K +++   ++  +   G++  AR  F+ M ERD   W AMI  + R     EAL
Sbjct: 261 FEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEAL 320

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LF  MQ   +  +  +++S+L+ CA+L +L+ G  V   + +++   D++V + LI MY
Sbjct: 321 GLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMY 380

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
            KCGD+ +A+ +F   L KD   W +MI G + +G G+++L++F  M  + + PDEVT++
Sbjct: 381 VKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFI 440

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
           GVLSAC+++G V EG E F  M   + +EP   HY CMVDLLGRAG ++EA+E+++ MPM
Sbjct: 441 GVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPM 500

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           +P++IVWGALLGACR H   ++AE+A +++ +L+P N   YVLL ++YA   RW +   L
Sbjct: 501 EPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVL 560

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGD-KSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           R+ I +R + K PGCS IE+   VH F  GD KSHP+   I   L++++  L+  GY PD
Sbjct: 561 RKKI-NRRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPD 619

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            S V  DV EE+K  ++  HSE+LA+A+GL+    G+ IR++KNLR+C DCH   KL++ 
Sbjct: 620 GSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAK 679

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           V  RE+I+RD  RFHHFK GSCSCKD+W
Sbjct: 680 VTGREIILRDANRFHHFKDGSCSCKDFW 707


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/586 (37%), Positives = 334/586 (56%), Gaps = 31/586 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           +++H  +   G   ++ V N L+  Y   G ++ A+ +FD   K    +W+ +  GY +V
Sbjct: 70  RQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKV 129

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
             F     +F E+ R G      +  +V+ AC  LKDL  G+  H    +C +     + 
Sbjct: 130 GNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVC 189

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
             L DMYA C                                 V+ A Q F +M +RD  
Sbjct: 190 ATLVDMYARCK-------------------------------VVEDAHQIFVKMWKRDLA 218

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            WT MI          E+L  F  M+   I PD+  +V+++ ACA LGA+   + +  YI
Sbjct: 219 TWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYI 278

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           +      D+ +G A+IDMY KCG VE A+ +F  M  ++  TW+AMI     +G G+K+L
Sbjct: 279 NGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKAL 338

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++F  MLR+ I+P+ +T+V +L AC+H G+++EG+ +F+ M  ++G+ P+  HY CMVDL
Sbjct: 339 ELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDL 398

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L+EALE+I+ MP++ + ++WGALLGACR+HR  ++AE  A+ +L+L       Y
Sbjct: 399 LGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHY 458

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           VLL NIYA   +W++  + R ++   G++K PG + IE+   +++F  GDK+HP++ EIY
Sbjct: 459 VLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIY 518

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L  +   L+  GY PD ++V  DV EE K+  +Y HSEKLA+AFGL+    G  IRI 
Sbjct: 519 KMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRIT 578

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+C DCH   K VS++  + +IVRD  RFHHFK G CSC+DYW
Sbjct: 579 KNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 217/453 (47%), Gaps = 47/453 (10%)

Query: 4   NSSISPPSTLTQETP-----------LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQN 52
           N + + P+  +QE+              S + +C ++ Q++Q+H+Q    G   N  V N
Sbjct: 30  NCNSNEPTPCSQESECSHVLHYDTKRFRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVAN 89

Query: 53  KLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112
           KL+ +   E+G ++ A ++F  + +     W+ ++ GY+++ +  +   ++ ++L+S   
Sbjct: 90  KLL-YMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAP 148

Query: 113 PDNYTFPFLLKGFTRDIA-VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG 171
            D+Y+ P +++   RD+  ++ G+ +HC  LK G D   FV   L+  Y  C  V+ A  
Sbjct: 149 LDDYSAPVVIRA-CRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQ 207

Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231
           IF   +K D+ TW  M           E+   F  M  +G++P  V +V V+ ACAKL  
Sbjct: 208 IFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGA 267

Query: 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
           ++  K  H Y+       ++IL  A+ DMYA CG +  A  IF  ++ ++VI+W+A++  
Sbjct: 268 MNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAA 327

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           Y   GQ +                               +AL LF  M  S I P+  T 
Sbjct: 328 YGYHGQGE-------------------------------KALELFPMMLRSGILPNRITF 356

Query: 352 VSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM- 409
           VS+L AC++ G +E G+ +  +  D+  V  D+     ++D+  + G +++A  +   M 
Sbjct: 357 VSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMP 416

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           + KD+  W A++    I+ H D +  +   +L+
Sbjct: 417 VEKDEVLWGALLGACRIHRHLDLAERVARSLLK 449


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 259/746 (34%), Positives = 385/746 (51%), Gaps = 76/746 (10%)

Query: 42  LGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101
            GL     + + LV F     G+  +A +VF K+P   V  WN M+ GY +       + 
Sbjct: 121 FGLRLGNAMLSMLVRF-----GETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALD 175

Query: 102 IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC 161
           +Y  M+ + VRPD YTFP +L+          G+E+H HVL+FGF   V V NAL++ Y 
Sbjct: 176 LYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYA 235

Query: 162 LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221
            CG+V  AR +FD     D ++WNAM +G+    + +   +LF  M    V P  +TI  
Sbjct: 236 KCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITS 295

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           V  A   L D+   K  H    +     ++   N+L  MYA+ G M  A  +F  +  +D
Sbjct: 296 VTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRD 355

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERD----------------------------- 312
            ++WTA+++GY   G  D A + +  M   +                             
Sbjct: 356 AMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHE 415

Query: 313 ---------YVLWT-AMIDGYLRVNRFREALTLFREMQT--------------------- 341
                    Y++ T A+++ Y +  R  +A+ +F+ M                       
Sbjct: 416 LAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFE 475

Query: 342 ---------SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
                    ++++P+  T ++ L ACA  GAL  G+ +  ++ +  ++ + ++ NALID+
Sbjct: 476 ALYYFRHMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDL 535

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG    A   F     KD  +W  MI G   +GHGD +L  F+QM++    PDEVT+
Sbjct: 536 YVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTF 595

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           V +L AC+  GMV EG E F  MT ++ I PN  HY CMVDLL RAG L EA   I  MP
Sbjct: 596 VALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMP 655

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
           + P++ VWGALL  CR+HR  E+ E+AAK +L L+P++   +VLLC++YA    WD    
Sbjct: 656 ITPDAAVWGALLNGCRIHRHVELGELAAKYVLALEPNDAGYHVLLCDLYADACLWDKLAR 715

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R+ + ++G+    GCS +E+ GVVH F+  D+SHPQ +EI   L+ +   +K  GY P 
Sbjct: 716 VRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYERMKASGYAPV 775

Query: 633 ISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
            S    D  E  K+     HSE+LA+AFGLI++ PG +I + KN   C  CHR+ K++S 
Sbjct: 776 ESHCPED--EVLKDDIFCGHSERLAVAFGLINTTPGTSISVTKNQYTCQSCHRILKMISN 833

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKD 718
           +  R++IVRD  + HHFK GSCSC D
Sbjct: 834 IVRRDIIVRDSKQLHHFKDGSCSCGD 859



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 131/318 (41%), Gaps = 33/318 (10%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           +E     P     V +   C   + ++ G RA  +  +      L L NA+  M    GE
Sbjct: 79  LESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGE 138

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
              A  +F  +  +DV SW  +V GY   G +D                           
Sbjct: 139 TWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLD--------------------------- 171

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
               EAL L+  M  + +RPD +T   +L +C  +    +G  V  ++ +     ++ V 
Sbjct: 172 ----EALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVL 227

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           NAL+ MY KCGDV  A++VF  M   D  +W AMI G   NG  +  L++F  ML   + 
Sbjct: 228 NALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQ 287

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P+ +T   V  A      V   +E    + ++ G   + A    ++ +    G + +A  
Sbjct: 288 PNLMTITSVTVASGLLSDVTFAKEMHG-LAVKRGFAGDVAFCNSLIQMYASLGMMRQART 346

Query: 507 VIKNMPMKPNSIVWGALL 524
           V   M  + +++ W A++
Sbjct: 347 VFSRMDTR-DAMTWTAMI 363



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 2/188 (1%)

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           +++S   PDE   V++   C    A+E G     + D       + +GNA++ M  + G+
Sbjct: 79  LESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGE 138

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
              A RVF +M  +D F+W  M+ G   +G  D++LD++ +M+ A + PD  T+  VL +
Sbjct: 139 TWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRS 198

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C        GRE  A + ++ G          ++ +  + G +  A +V  +M +  + I
Sbjct: 199 CGGVPDWRMGREVHAHV-LRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVM-DCI 256

Query: 519 VWGALLGA 526
            W A++  
Sbjct: 257 SWNAMIAG 264


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/707 (33%), Positives = 388/707 (54%), Gaps = 36/707 (5%)

Query: 19  LISPIETCESMHQLKQ---IHSQTIKLGLLTNPT-VQNKLVTFCCSEKGDMKYACKVFRK 74
           L +P+++C     L+    +H++ +  G     T + N L+T   S   D+  A ++F  
Sbjct: 20  LAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMY-SHCADVPSAVRLFDA 78

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           +PRP++  W T++ G ++   H++ +  +  M ++ + P  +      +      A   G
Sbjct: 79  MPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAG 138

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
            +LHC  ++ GFD+ +FV + L   Y   G +  A  +FD   + D V W AM  GY + 
Sbjct: 139 AQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKN 198

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
              +     F +M R+G++     ++  VLSA   LKD  + +  H  V +      + +
Sbjct: 199 GNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAV 258

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            NALTDMYA   +M  A  +                   I++G +++             
Sbjct: 259 RNALTDMYAKAADMDNAARVV-----------------KIDQGSLNV------------- 288

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           V  T++IDGY+  +   +AL +F E++   + P+EFT  S++  CA    LE G  +   
Sbjct: 289 VSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAE 348

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           + K  + +D FV + L+DMY KCG +  + ++F+E+       W A I  LA +GHG ++
Sbjct: 349 VIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREA 408

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           +  F +M  + I P+ +T+V +L+AC+H G+VDEG +YF  M   HGIEP   HY C++D
Sbjct: 409 IRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIID 468

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           + GRAG L+EA + I  MP+KPN+  W +LLGACR+  + E+ E+AA  +++L+PDN  V
Sbjct: 469 MYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGV 528

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           +V L  IYA+  +W++ + +R+++ D  IKK PG S ++ N   H F + D SHPQ ++I
Sbjct: 529 HVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKI 588

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
           Y KL+E+   +K  GY+PD   +  ++ +  K+R +  HSE++A+AF LIS      I +
Sbjct: 589 YEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFALISMPATKPIIV 648

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            KNLR+C DCH   K +S V +R++IVRD +RFHHF  G CSC DYW
Sbjct: 649 KKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDYW 695


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/727 (32%), Positives = 380/727 (52%), Gaps = 74/727 (10%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A +VF + P     LWNT++    R +  ++ + +   M  +  +  + T   LL+   +
Sbjct: 185 ANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGK 244

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV------------ 175
             A+  GK++H +V++FG  S+  + N+++S Y     +++AR +FD             
Sbjct: 245 LRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSI 304

Query: 176 -----------------------SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
                                  S K D++TWN++ SG+     ++        ++  G 
Sbjct: 305 ISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGF 364

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P S +I   L A  +L   ++GK  H Y+   K+  ++ +  +L DMY     +  A  
Sbjct: 365 KPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEV 424

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER--------------------- 311
           +F + KNK++ +W ++++GY  +G  D A +   QM E                      
Sbjct: 425 VFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGC 484

Query: 312 ------------------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
                             + V WTAMI G  +   + +AL  F +MQ  N++P+  TI +
Sbjct: 485 SEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTIST 544

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L ACA    L+ GE +  +  K+   +DI++  ALIDMY K G ++ A  VFR +  K 
Sbjct: 545 LLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKT 604

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
              W  M++G AI GHG++   +F  M +  I PD +T+  +LS C ++G+V +G +YF 
Sbjct: 605 LPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFD 664

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
            M   + I P   HY CMVDLLG+AG L+EAL+ I  MP K ++ +WGA+L ACR+H+D 
Sbjct: 665 SMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDI 724

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           ++AE+AA+ +  L+P N A YVL+ NIY+   RW +   L++ +   G+K     S I++
Sbjct: 725 KIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKESMTAMGVKIPNVWSWIQV 784

Query: 594 NGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHS 653
              +H F    KSHP+  EIY  L ++ S++K +GY+PD + V  ++ + +KE+ +  H+
Sbjct: 785 RQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDDSEKEKVLLSHT 844

Query: 654 EKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
           EKLAM +GL+    G  IR+VKN R+C DCH  AK +S+  +RE+ +RD  RFHHF +G 
Sbjct: 845 EKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGE 904

Query: 714 CSCKDYW 720
           CSC D W
Sbjct: 905 CSCNDRW 911



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/528 (26%), Positives = 252/528 (47%), Gaps = 9/528 (1%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           SP  +  + +P   P+    +++ ++++H+Q IK+    N    +  +     E GD + 
Sbjct: 23  SPQFSSPKFSPFFHPLGGIRTLNSVRELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFES 82

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLKGFT 126
           A KVF      +  LWN+ ++ ++      + +L ++ ++    V+ D+     +LK   
Sbjct: 83  ATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTVVLKICL 142

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
             + +  G E+H  +LK GF   V +  ALI+ Y  C  +D A  +FD +   +   WN 
Sbjct: 143 ALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNT 202

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           +     R +++++  +L   M+      T  TIV +L AC KL+ L+ GK+ H YV    
Sbjct: 203 IVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFG 262

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
            V N  + N++  MY+    +  A  +F + ++ ++ SW +I++ Y   G ++ A   F 
Sbjct: 263 RVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFR 322

Query: 307 QMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
           +M       D + W +++ G+L    +   LT  R +Q++  +PD  +I S L A   LG
Sbjct: 323 EMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELG 382

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
              LG+ +  YI ++K++ D++V  +L+DMY K   +EKA+ VF     K+   W ++I 
Sbjct: 383 YFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLIS 442

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G    G  D +  +  QM    I  D VT+  ++S  + +G  +E       +    G+ 
Sbjct: 443 GYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIK-SLGLT 501

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMP---MKPNSIVWGALLGAC 527
           PN   +  M+    +  +  +AL+    M    +KPNS     LL AC
Sbjct: 502 PNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRAC 549



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 140/318 (44%), Gaps = 20/318 (6%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR----PSVCLWNTMI 87
           L Q+  + IK  L+T  ++ +      CSE+     A  V  +I      P+V  W  MI
Sbjct: 457 LIQMKEEGIKADLVTWNSLVSGYSMSGCSEE-----ALAVINRIKSLGLTPNVVSWTAMI 511

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
            G  + +++ + +  +  M + +V+P++ T   LL+       ++ G+E+HC  +K GF 
Sbjct: 512 SGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFV 571

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
             +++  ALI  Y   G++ +A  +F    +  +  WN M  GY      +E   LF  M
Sbjct: 572 DDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNM 631

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGE 266
            + G+ P ++T   +LS C     +  G +    +K +  I P +   + + D+    G 
Sbjct: 632 CKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGF 691

Query: 267 MGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDM----ARQYFDQMP--ERDYVLWTAM 319
           +  AL+    +  K D   W A++        + +    AR  F   P    +YVL   +
Sbjct: 692 LDEALDFIHAMPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNI 751

Query: 320 IDGYLR---VNRFREALT 334
              + R   V R +E++T
Sbjct: 752 YSTFERWGDVERLKESMT 769


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/614 (37%), Positives = 358/614 (58%), Gaps = 36/614 (5%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L++ I  C+++  LKQIH+  I  GLL +  V +K+  F     G + YA     +    
Sbjct: 8   LLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLH 67

Query: 79  SVCL-WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
              L +NT+I  Y+   + K   L+Y  ++ +   PD YTFP +LK  T+ + V+ G+++
Sbjct: 68  VGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQV 127

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H   +K GF   ++VQN+L+  Y +CG+   A  +FD     DVV+W  + SGY R   F
Sbjct: 128 HGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLF 187

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           DE   LF +M+   V+P   T V VL AC ++  L +GK  H  V +      L++ NAL
Sbjct: 188 DEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNAL 244

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            DMY  C  +                                 AR+ FD++P+RD V WT
Sbjct: 245 VDMYVKCECLC-------------------------------EARKLFDELPDRDIVSWT 273

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           ++I G ++  + +++L LF +MQ S + PD   + S+L+ACA+LGAL+ G WV+ YI++ 
Sbjct: 274 SIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQ 333

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            ++ DI +G AL+DMY KCG +E A  +F  +  ++ FTW A++ GLA++GHG ++L  F
Sbjct: 334 GIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHF 393

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ-HGIEPNEAHYGCMVDLLG 496
             M+ A I P+EVT++ +L+AC H+G+V EGR YF  M  Q     P   HYGCM+DLL 
Sbjct: 394 ELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLC 453

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           RAG L+EA + I+NMP+ P+ ++WGALL AC+ + + E+++     +LEL   +  VYVL
Sbjct: 454 RAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVL 513

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L NIYA   RWD+   +R+++ D+GI+K PG S+IE++G  HEF+ GD +H + ++I++ 
Sbjct: 514 LSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHIL 573

Query: 617 LDEMTSDLKFVGYM 630
           L+ + + +   G+ 
Sbjct: 574 LNILANQVYLEGHF 587


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/624 (37%), Positives = 360/624 (57%), Gaps = 14/624 (2%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKY 67
           P  +L  +   +  +E C +    KQI +Q +++ L+      ++L+ F   +   ++  
Sbjct: 24  PTVSLALKHATLILLEKCSTRDHFKQILAQIMRINLIGQTFPMSRLILFSAITHPENLDM 83

Query: 68  ACKVFRK-IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG-- 124
           A  +FR   P P++ ++NTMI   S   S       Y  +L S + P+  TF FLL+   
Sbjct: 84  AVLLFRHHTPHPNLYIYNTMISALSL--SLNQSFAFYNSLLSSCIYPNRSTFLFLLQASK 141

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
           F   +      ++HCH +  G     ++QN L+  Y    ++ +A  +F      D V++
Sbjct: 142 FLSQVM-----QIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSF 196

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N M  GY +     E  K   EM   G+ P   T++ +L  C +L D  +GK  H +++ 
Sbjct: 197 NIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIER 256

Query: 245 CKIV--PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
             ++   NLIL NAL DMY  C E+  A  IF  I  KD ISW  ++ GY   G +++A 
Sbjct: 257 RGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAH 316

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
            +F+ MP RD V W ++I GY +         LF  M   NI PD  TI+++++A A +G
Sbjct: 317 NFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIG 376

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
           AL  G W+  ++ + ++K D F+G+A IDMY KCG +++A  VFRE+  KD   WT MI 
Sbjct: 377 ALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMIT 436

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A +G+G K+L +F +M +  ++P++VT+V VL+AC+H+G V +G   F  M  ++GIE
Sbjct: 437 GFAFHGYGSKALQLFYEM-QEYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIE 495

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   HYGC+VDLLGR+G  +E  +VI+ MPMKP+  +WGA+L ACR + + E+AE+A K+
Sbjct: 496 PGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKE 555

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           +L+L+P+ E  YVLL NIYA   RW +  ++R+++  RG+KKT GCS + ++G++HEFVA
Sbjct: 556 LLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVDGIIHEFVA 615

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKF 626
            DK HP+  EI   L  + S++K 
Sbjct: 616 ADKRHPRWIEIQSILFCLKSEMKL 639


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/559 (40%), Positives = 328/559 (58%), Gaps = 39/559 (6%)

Query: 169 ARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETR-----KLFGEMERKGVLPTSVTIVLV 222
           AR +FD V+   D V +N +  GY R      +      ++F  M  +GV P + T V +
Sbjct: 80  ARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTFVSL 139

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L ACA  +  + G++AH    +     +  +   L +MYA CG+   A   FG      V
Sbjct: 140 LKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCV 199

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +S+ A                               MI   +R +R  EAL LFREMQ  
Sbjct: 200 VSYNA-------------------------------MIAAAVRSSRPGEALVLFREMQAK 228

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
            + P   T++S+L+ACA LGAL+LG W+  Y+ K  + + + V  AL+DMY KCG +E A
Sbjct: 229 GLNPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDA 288

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
             VF+ M  +D+  W+ MIV  A +G+G +++ +F +M +  + PD++T++G+L AC+H+
Sbjct: 289 IAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHS 348

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G+V EG  YF DM   HGI P   HYGC+ DLL R+G L  A + I  +P+ P  I+W  
Sbjct: 349 GLVSEGLRYFDDMK-DHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRT 407

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LL AC  H D E+ +   ++ILELD  +   YV+  N+ A    W+    +R+++ D+G+
Sbjct: 408 LLSACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGV 467

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF-LDVG 641
            K PGCS IE++  VHEF AGD  HP+++E    +DE+   LK VGY+PD S VF +++G
Sbjct: 468 VKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMG 527

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
           EE+K  ++  HSEKLA+AFGL+++ PG T+R+VKNLR+C DCH MAK VSMV++R +I+R
Sbjct: 528 EEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILR 587

Query: 702 DKTRFHHFKHGSCSCKDYW 720
           D  RFHHF+ G CSC DYW
Sbjct: 588 DLNRFHHFERGICSCGDYW 606



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 215/435 (49%), Gaps = 43/435 (9%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC---SEKGDMK 66
           P +   + PL+S +  C S+  L Q+H+  +K GL  +P +  +L+T C    +    + 
Sbjct: 19  PKSAAPQHPLLSHLPHCTSLRGLAQLHAAAVKAGLAAHPALVTRLLTLCTGPGAGPAHLA 78

Query: 67  YACKVFRKIPRPSVCLW-NTMIKGYSRIDSHKNG-----VLIYLDMLKSDVRPDNYTFPF 120
           YA +VF ++ +PS  +W NT+++GY+R  S  +      V +++ ML+  V PD YTF  
Sbjct: 79  YARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTFVS 138

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           LLK      A E G++ H   +K G     +V+  LI+ Y  CG+   AR  F  +  D 
Sbjct: 139 LLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDC 198

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           VV++NAM +   R  +  E   LF EM+ KG+ PT VT++ VLSACA L  L +G+  H 
Sbjct: 199 VVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHD 258

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
           YV++  +   + +  AL DMYA CG +  A+ +F  ++++D  +W+ ++  Y N G    
Sbjct: 259 YVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGY--- 315

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
                                        REA++LF EM+   ++PD+ T + +L AC++
Sbjct: 316 ----------------------------GREAISLFEEMKKQGMKPDDITFLGLLYACSH 347

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTA 419
            G +  G      +  + +   I     + D+  + G +E+A +   E+ +      W  
Sbjct: 348 SGLVSEGLRYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRT 407

Query: 420 MIVGLAINGHGDKSL 434
           ++   A  GHGD  L
Sbjct: 408 LLS--ACGGHGDVEL 420


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/580 (39%), Positives = 332/580 (57%), Gaps = 8/580 (1%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKD----DVVTWNAMFSGYKRVKQFDETRKLF 204
           +V   +ALI+ +   G+ + A G+ +    D    +V+TWN + SG  R  +  +     
Sbjct: 85  TVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLAL 144

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
             M  +G LP +  +   LSA   + D+ VG++ H YV +     +  +  AL DMY  C
Sbjct: 145 VRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKC 204

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA----RQYFDQMPERDYVLWTAMI 320
           G     + +F    + DV S  A+V G     QV  A    R++  +  E + V WT+++
Sbjct: 205 GRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIV 264

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
              ++  R  EA+ LFREMQ+  I P+  TI  +L A AN+ AL  G     +  +    
Sbjct: 265 ACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFH 324

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
           +DI+VG+AL+DMY KCG V  A+ +F  M  ++  +W AMI G A++G  + ++ +F  M
Sbjct: 325 HDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSM 384

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
             +   PD VT+  VL AC+  G  +EGR YF +M  +HGI P   HY CMV LLGRAG 
Sbjct: 385 QSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGK 444

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L++A ++I  MP +P+  +WG+LLG+CRVH +  +AE+AA+ + +L+P+N   YVLL NI
Sbjct: 445 LDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNI 504

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YA+   WD    LR M+   G+KK  GCS IE+   VH  +AGD SHP    I  KL  +
Sbjct: 505 YASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHL 564

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
           T +++ +G+ P    V  DV E++K+  +  HSEKLA+A GLIS+  G  ++++KNLR+C
Sbjct: 565 TMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRIC 624

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            DCH   K +S    RE+ VRD  RFHHFK G CSC DYW
Sbjct: 625 GDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 163/394 (41%), Gaps = 78/394 (19%)

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--GFTRDIAVEFGK 135
           P+V  WN ++ G +R    ++ VL  + M      PD       L   G   D+AV  G+
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAV--GE 176

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           +LH +V+K G      V  ALI  Y  CG  D    +FD S   DV + NA+ +G  R  
Sbjct: 177 QLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNA 236

Query: 196 QFDETRK-----------------------------------LFGEMERKGVLPTSVTIV 220
           Q  E  +                                   LF EM+ +G+ P SVTI 
Sbjct: 237 QVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIP 296

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            VL A A +  L  G+ AH +        ++ + +AL DMYA CG +  A  IF  +  +
Sbjct: 297 CVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR 356

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           +V+SW A++ GY   G+ +                                A+ LFR MQ
Sbjct: 357 NVVSWNAMIGGYAMHGEAE-------------------------------NAVRLFRSMQ 385

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKC 396
           +S  +PD  T   +L AC+  G  E G   ++Y ++ + K+ I         ++ +  + 
Sbjct: 386 SSKEKPDLVTFTCVLGACSQAGWTEEG---RSYFNEMQHKHGISPRMEHYACMVTLLGRA 442

Query: 397 GDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           G ++ A  +  +M    D   W +++    ++G+
Sbjct: 443 GKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGN 476



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 130/328 (39%), Gaps = 72/328 (21%)

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI------------------ 320
           ++D    ++++  Y+  G    AR   D MP R  V W+A+I                  
Sbjct: 52  SRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLER 111

Query: 321 -----------------DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
                             G  R  R R+A+     M      PD   +   L+A  ++G 
Sbjct: 112 MRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGD 171

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           + +GE +  Y+ K   + D  V  ALIDMY KCG  ++  RVF E    D  +  A++ G
Sbjct: 172 VAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAG 231

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
           L+ N    ++L +F + +   I  + V++  +++ C   G   E  + F +M  + GIEP
Sbjct: 232 LSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE-GIEP 290

Query: 484 NEAHYGC-----------------------------------MVDLLGRAGHLNEALEVI 508
           N     C                                   +VD+  + G + +A  + 
Sbjct: 291 NSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIF 350

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMA 536
           + MP + N + W A++G   +H +AE A
Sbjct: 351 EAMPYR-NVVSWNAMIGGYAMHGEAENA 377



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 125/295 (42%), Gaps = 27/295 (9%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCL----WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN 115
           S    +  A ++FR+     + L    W +++    +       V ++ +M    + P++
Sbjct: 233 SRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNS 292

Query: 116 YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV 175
            T P +L  F    A+  G+  HC  L+ GF   ++V +AL+  Y  CG V  AR IF+ 
Sbjct: 293 VTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEA 352

Query: 176 SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
               +VV+WNAM  GY    + +   +LF  M+     P  VT   VL AC++    + G
Sbjct: 353 MPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEG 412

Query: 236 KRAHRYVKECK----IVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVT 290
           +    Y  E +    I P +     +  +    G++  A +I   +    D   W +++ 
Sbjct: 413 R---SYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLG 469

Query: 291 GYINRGQVDM----ARQYFDQMPER--DYVLWT------AMIDGYLRVNRFREAL 333
                G V +    A   F   PE   +YVL +       M DG   VNR R+ +
Sbjct: 470 SCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDG---VNRLRDMM 521



 Score = 46.2 bits (108), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           V  D FV ++L+  Y + G    A+ V   M  +    W+A+I   A +G  + +  +  
Sbjct: 51  VSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLE 110

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH--GIEPNEAHYGCMVDLLG 496
           +M    + P+ +T+ G++S    +G     R+    +   H  G  P+     C +  +G
Sbjct: 111 RMRSDGVEPNVITWNGLVSGLNRSG---RARDAVLALVRMHGEGFLPDATGVSCALSAVG 167

Query: 497 RAG 499
             G
Sbjct: 168 DVG 170


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/753 (32%), Positives = 392/753 (52%), Gaps = 59/753 (7%)

Query: 2   FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
           F + S  P S L   T + SP         L+ +H    K G L      N L+T    +
Sbjct: 28  FHSRSRQPCSFLHSTTSIGSP-------PSLRALHGHYFKKGSLQILNSANYLLTLYV-K 79

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPF 120
             ++ +A K+F +I   +   W  +I G++R       V  ++ +M      P+ YT   
Sbjct: 80  SSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSS 139

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +LK  +R+  ++FGK +H  +L+ G    V ++N+++  Y  C E + A   F++  + D
Sbjct: 140 VLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKD 199

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL--------------------------- 213
           VV+WN M   Y R    +++ ++F     K V+                           
Sbjct: 200 VVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVA 259

Query: 214 ------PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
                 P + +I L+L +   L  ++VG++ H  V    +  +  + ++L +MY  CG M
Sbjct: 260 HGTEFSPVTFSIALILVSSLSL--VEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRM 317

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  I      KDV         ++ +G   +      + P+   V W++M+ GY+   
Sbjct: 318 DKASTIL-----KDV------PLNFLRKGNFGVT----CKEPKARMVSWSSMVSGYVWNG 362

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
           ++ + +  FR M    I  D  T+ +I++ACAN G LE G+ +  YI K  ++ D +VG+
Sbjct: 363 KYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGS 422

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           +LIDMY K G ++ A  +F ++   +   WT+MI G A++G G +++ +F  ML   IIP
Sbjct: 423 SLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIP 482

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           +EVT+VGVL+AC+H G+++EG  YF  M   + I P   HY  MV+L GRAGHL EA   
Sbjct: 483 NEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNF 542

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           I    +   + VW + L +CR+H++  M +  ++ +L+  P +   Y+LL N+ ++ ++W
Sbjct: 543 IFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQW 602

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           D    +R ++  RG+KK PG S +++   +H F  GD+SHPQ KEIY  LD +   LK +
Sbjct: 603 DEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEI 662

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           GY  D   V  DV EE  E  +  HSEKLA+ F +I++ P   IRI+KNLR+C DCH   
Sbjct: 663 GYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFSIINTSPRTPIRIMKNLRICNDCHNFF 722

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           K  S + +RE+IVRD  RFHHFK  SCSC +YW
Sbjct: 723 KYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/565 (40%), Positives = 349/565 (61%), Gaps = 24/565 (4%)

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACA 227
           AR +FD   + + ++WN + SGY +     E RK+F +M ER  V  T++    V     
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLI 72

Query: 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
           +  +L   +   R V    ++   ++E+   D          A ++F  +  KDV++ T 
Sbjct: 73  EEAELLFWRMPERNVVSWTVMLGGLIEDGRVDE---------ARQLFDMMPVKDVVASTN 123

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG-------------YLRVNRFREALT 334
           ++ G  + G++  AR+ FD+MP+R+ V WT+MI G             Y R     EAL 
Sbjct: 124 MIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALA 183

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LF  MQ   +RP   +++S+L+ C +L +L+ G  V + + +++   DI+V + LI MY 
Sbjct: 184 LFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYI 243

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
           KCGD+  A+RVF     KD   W ++I G A +G G+K+L++F  M  +SI PDE+T++G
Sbjct: 244 KCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIG 303

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           VLSAC++TG V EG E F  M  ++ ++P   HY CMVDLLGRAG LNEA+ +I+NMP++
Sbjct: 304 VLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVE 363

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
            ++IVWGALLGACR H++ ++AE+AAK++L+L+P+N   Y+LL N+Y++ +RW +  ELR
Sbjct: 364 ADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELR 423

Query: 575 QMILDRGIKKTPGCSMIEMNGVVHEFV-AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           + +  + ++K+PGCS IE++  VH F   G  SHP+ + I  KL ++ + L+  GY PD 
Sbjct: 424 KTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDG 483

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
           S V  DV EE+K  ++  HSEKLA+A+GL+    G+ IR++KNLR+C D H   KL++ V
Sbjct: 484 SFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQV 543

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKD 718
             RE+I+RD  RFHHFK G CSC D
Sbjct: 544 TGREIILRDTNRFHHFKDGLCSCSD 568



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 176/396 (44%), Gaps = 65/396 (16%)

Query: 46  TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLD 105
           TN    N LV+    + G +  A KVF K+P  +V  W  MI+GY +    +   L++  
Sbjct: 23  TNTISWNGLVSGYV-QNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWR 81

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD----SSVFVQNALISTYC 161
           M + +V     ++  +L G   D  V+  ++L        FD      V     +I   C
Sbjct: 82  MPERNV----VSWTVMLGGLIEDGRVDEARQL--------FDMMPVKDVVASTNMIDGLC 129

Query: 162 LCGEVDMARGIFDVSYKDDVVTWNAMFSG-------------YKRVKQFD-ETRKLFGEM 207
             G +  AR IFD   + +VV W +M SG             Y+R K F+ E   LF  M
Sbjct: 130 SEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYER-KGFELEALALFSLM 188

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           +R+GV P+  +++ VLS C  L  LD G++ H  +   +   ++ + + L  MY  CG++
Sbjct: 189 QREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDL 248

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  +F    +KD++ W +I+ GY   G        F +                    
Sbjct: 249 VTAKRVFDRFSSKDIVMWNSIIAGYAQHG--------FGE-------------------- 280

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVG 386
              +AL +F +M +S+I PDE T + +L+AC+  G ++ G E  ++   K +V       
Sbjct: 281 ---KALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHY 337

Query: 387 NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
             ++D+  + G + +A  +   M +  D   W A++
Sbjct: 338 ACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 373



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 147/313 (46%), Gaps = 25/313 (7%)

Query: 54  LVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKG-------------YSRIDSHKNGV 100
           ++   CSE G +  A ++F ++P+ +V  W +MI G             Y R       +
Sbjct: 124 MIDGLCSE-GRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEAL 182

Query: 101 LIYLDMLKSDVRPDNYTFPFLLKGFT---RDIAVEFGKELHCHVLKFGFDSSVFVQNALI 157
            ++  M +  VRP   +FP ++   +      +++ G+++H  +++  FD  ++V + LI
Sbjct: 183 ALFSLMQREGVRP---SFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLI 239

Query: 158 STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217
           + Y  CG++  A+ +FD     D+V WN++ +GY +    ++  ++F +M    + P  +
Sbjct: 240 TMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEI 299

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
           T + VLSAC+    +  G      +K + ++ P       + D+    G++  A+ +  N
Sbjct: 300 TFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIEN 359

Query: 277 IK-NKDVISWTAIVTGYINRGQVDMAR---QYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +    D I W A++        +D+A    +   Q+   +   +  + + Y   +R+++ 
Sbjct: 360 MPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDV 419

Query: 333 LTLFREMQTSNIR 345
           + L + M+  N+R
Sbjct: 420 VELRKTMRAKNLR 432



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 113/285 (39%), Gaps = 40/285 (14%)

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI---- 344
           + GY    +   AR+ FD+MPE + + W  ++ GY++     EA  +F +M   N+    
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWT 60

Query: 345 --------------------RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
                               R  E  +VS       L      +  +   D   VK D+ 
Sbjct: 61  AMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVK-DVV 119

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD------------- 431
               +ID  C  G + +A+ +F EM +++   WT+MI G   +G                
Sbjct: 120 ASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFEL 179

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L +FS M R  + P   + + VLS C     +D GR+  + + ++   + +      +
Sbjct: 180 EALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQL-VRSQFDIDIYVSSVL 238

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
           + +  + G L  A  V      K + ++W +++     H   E A
Sbjct: 239 ITMYIKCGDLVTAKRVFDRFSSK-DIVMWNSIIAGYAQHGFGEKA 282


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/524 (41%), Positives = 329/524 (62%), Gaps = 5/524 (0%)

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDM 260
           +LF  + R G  P      L  ++CA+ +D     + H +  K   +  +  +   L   
Sbjct: 61  RLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVRCRLVHA 120

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG-QVDMARQYFDQMPERDYVLWTAM 319
           YA CG +  A  +F    + D+++W  ++ GY   G   D+ R +F +MP RD V W  +
Sbjct: 121 YAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWNTV 180

Query: 320 IDGYLRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           +   +    + EA+ +FREM  S   +PD  T+VS+++A A LGAL  G W   Y+ +  
Sbjct: 181 LSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFRKC 240

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF-TWTAMIVGLAINGHGDKSLDMF 437
           ++ +  + +ALI+MY KCG +E A  VF  +  K    TW AM+ G   NG+ +++L++F
Sbjct: 241 IEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERALELF 300

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           ++M    ++P+++T+  VL+AC+H G+V+EG +YF  M+  +GIEP+ AHYGCMVDL  R
Sbjct: 301 TRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLFCR 360

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
           AG   +A E+I+ MPM+P++ +  ALLGACR H++ E+ +    +++E   ++ A YVLL
Sbjct: 361 AGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAANDHAGYVLL 420

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            NIYA    W    ++R+++LDRG+ KTPG S +E+NGV+HEF++GDKSH + ++IY  L
Sbjct: 421 SNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDIYKML 480

Query: 618 DEMTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
            E+   LK  GY PD S+V LD+ +ED KE ++  HSEKLA+AFGLIS+ PG  IR+V N
Sbjct: 481 GEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRVVNN 540

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR+C DCH   KL+S +Y R +IVRD  RFHHF+ GSCSC DYW
Sbjct: 541 LRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 148/354 (41%), Gaps = 68/354 (19%)

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS-V 150
           R++ H   + ++  +L+S   PD   +        R        +LH H  K G  +S  
Sbjct: 53  RLNPHL-ALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHR 111

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV---------------- 194
            V+  L+  Y +CG +  AR +FD    +D+V WN +  GY +                 
Sbjct: 112 RVRCRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPS 171

Query: 195 ----------------KQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
                            ++DE   +F EM   +   P  VT+V V+SA A L  L  G  
Sbjct: 172 RDSVSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLW 231

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI-SWTAIVTGYINRG 296
           AH YV    I     L +AL +MY+ CG +  A+ +F N+  K  + +W A++ G+   G
Sbjct: 232 AHAYVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANG 291

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
             +                                AL LF  M+++ + P++ T  ++L 
Sbjct: 292 YSE-------------------------------RALELFTRMESTRLMPNKITFNTVLN 320

Query: 357 ACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
           AC++ G +E G ++ +       ++ DI     ++D++C+ G  EKA+ + + M
Sbjct: 321 ACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQTM 374



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 106/242 (43%), Gaps = 4/242 (1%)

Query: 36  HSQTIKLGLLTNPTVQ-NKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           H++ +  G   N  V  N L+     E GD       F ++P      WNT++       
Sbjct: 129 HARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWNTVLSWCVVNG 188

Query: 95  SHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
            +   + ++ +ML S + +PD  T   ++       A+  G   H +V +   +    + 
Sbjct: 189 EYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFRKCIEVEEKLS 248

Query: 154 NALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
           +ALI+ Y  CG ++ A  +FD V  K  + TWNAM +G+      +   +LF  ME   +
Sbjct: 249 SALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERALELFTRMESTRL 308

Query: 213 LPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           +P  +T   VL+AC+    ++ G K   R  +   I P++     + D++   G    A 
Sbjct: 309 MPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLFCRAGMFEKAE 368

Query: 272 EI 273
           EI
Sbjct: 369 EI 370


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 345/588 (58%), Gaps = 3/588 (0%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ELH  ++K GFD S  + N L+  Y  CG +  A  +FD     D V+W ++ + + +  
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 196 QFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
               T  +   M    G+ P       ++ AC+ L  L +GK+ H          + +++
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVK 143

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           ++L DMY  CG+   A  +F +I  K+ +SWT++++GY   G+   A   F Q P R+  
Sbjct: 144 SSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLF 203

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIR-PDEFTIVSILTACANLGALELGEWVKTY 373
            WTA+I G ++      + +LF EM+   I   D   + S++  CANL  LELG+ +   
Sbjct: 204 SWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGL 263

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           +     ++ +F+ NAL+DMY KC D+  A+ +F  M RKD  +WT++IVG A +G  +++
Sbjct: 264 VIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEA 323

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           L ++ +M+ + I P+EVT+VG+L AC+H G+V  GRE F  MT  + I P+  HY C++D
Sbjct: 324 LTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLD 383

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           LL R+GHL+EA  ++  +P KP+   W +LL AC  H + EM    A ++L+L P++ + 
Sbjct: 384 LLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPST 443

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK-SHPQTKE 612
           Y+LL N+YA    W +  ++R+++    ++K PG S I+       F AG+   HP   E
Sbjct: 444 YILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNE 503

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I   L ++ ++++  GY+P+ S V  D+ +++KE+ ++ HSE+LA+A+GL+ + PG  IR
Sbjct: 504 ICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIR 563

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IVKNLR+C DCH + K +S +  RE++VRD TR+HHFK G CSC D+W
Sbjct: 564 IVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 192/430 (44%), Gaps = 67/430 (15%)

Query: 27  ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
           +S     ++HSQ IK G   +  + N L+     + G +  A ++F ++P      W ++
Sbjct: 17  QSASAAGELHSQIIKAGFDKSSLLSNTLLDVY-GKCGLIPQALQLFDEMPNRDHVSWASI 75

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           +  +++    +  + +   M   D ++PD++ F  +++  +    +  GK++H   +   
Sbjct: 76  LTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSF 135

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE------ 199
           F     V+++LI  Y  CG+ D AR +FD     + V+W +M SGY R  +  E      
Sbjct: 136 FCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFL 195

Query: 200 -------------------------TRKLFGEMERKGV-LPTSVTIVLVLSACAKLKDLD 233
                                    +  LF EM R+G+ +   + +  V+  CA L  L+
Sbjct: 196 QAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLE 255

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
           +GK+ H  V        L + NAL DMYA C ++  A +IF  +  KDVISWT+I+ G  
Sbjct: 256 LGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTA 315

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
             G+ +                               EALTL+ EM  S I+P+E T V 
Sbjct: 316 QHGKAE-------------------------------EALTLYDEMVLSRIKPNEVTFVG 344

Query: 354 ILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LR 411
           +L AC++ G +  G E  ++      +   +     L+D+  + G +++A+ +  ++  +
Sbjct: 345 LLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFK 404

Query: 412 KDKFTWTAMI 421
            D+ TW +++
Sbjct: 405 PDEPTWASLL 414



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 165/398 (41%), Gaps = 68/398 (17%)

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L  CA+ +        H  + +     + +L N L D+Y  CG +  AL++F  + N+D 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +SW +I+T + N+  +                               R  L++   M T 
Sbjct: 70  VSWASILTAH-NKALIP------------------------------RRTLSMLNTMFTH 98

Query: 343 N-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
           + ++PD F    I+ AC++LG L LG+ V      +   +D  V ++LIDMY KCG  + 
Sbjct: 99  DGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDD 158

Query: 402 AQRVFREMLRKDK-------------------------------FTWTAMIVGLAINGHG 430
           A+ VF  +L K+                                F+WTA+I GL  +GHG
Sbjct: 159 ARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHG 218

Query: 431 DKSLDMFSQMLRASI-IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
             S  +F++M R  I I D +    V+  C +  +++ G++    + I  G E       
Sbjct: 219 IYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHG-LVIALGFESCLFISN 277

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA-EMAAKQILELDP 548
            +VD+  +   +  A ++   MP K + I W +++     H  AE A  +  + +L    
Sbjct: 278 ALVDMYAKCSDILAAKDIFYRMPRK-DVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIK 336

Query: 549 DNEAVYVLLCNIYAACNRWDNFREL-RQMILDRGIKKT 585
            NE  +V L    +        REL R M  D  I  +
Sbjct: 337 PNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPS 374



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 146/345 (42%), Gaps = 48/345 (13%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPR 77
           +  C S+  L   KQ+H++ +      +  V++ L+     C +  D +    VF  I  
Sbjct: 112 VRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDAR---AVFDSILF 168

Query: 78  PSVCLWNTMIKGYSRIDSH--------------------------KNGVLIYLDMLKSDV 111
            +   W +MI GY+R                              ++G  IY   L +++
Sbjct: 169 KNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEM 228

Query: 112 RPDNYTF--PFLLKGFTRDIA----VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           R +      P +L       A    +E GK++H  V+  GF+S +F+ NAL+  Y  C +
Sbjct: 229 RREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSD 288

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           +  A+ IF    + DV++W ++  G  +  + +E   L+ EM    + P  VT V +L A
Sbjct: 289 ILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYA 348

Query: 226 CAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVI 283
           C+    +  G+   R +  +  I P+L     L D+ +  G +  A  +   I  K D  
Sbjct: 349 CSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEP 408

Query: 284 SWTAIVTGYINRGQVDM----ARQYFDQMPE--RDYVLWTAMIDG 322
           +W ++++  +    ++M    A +  D  PE    Y+L + +  G
Sbjct: 409 TWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAG 453


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/461 (45%), Positives = 298/461 (64%), Gaps = 6/461 (1%)

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP--ERDYVLWTAM 319
           AA G    A      ++++D     ++++ Y   G +  AR+ FD+ P  +RD  LW ++
Sbjct: 115 AAAGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSL 174

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           +  YL    +   L LFR+M    +  DE T++++++AC++LGAL+ G W   Y  +   
Sbjct: 175 LHAYLSQGLYTHVLRLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCR 230

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
                +G AL++MY +CGDVE A  VF EML KD  TW+ MI GLA+NG    +L +F++
Sbjct: 231 NTTRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAE 290

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M    + PD +T   VLSAC+H GMVDEG+ +   M I++ ++P   HYGC+VDLLGRAG
Sbjct: 291 MKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAG 350

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
            L EAL +I+ +P K +  +WGALL ACR H++ +M +MAA +IL+LDP +    V L N
Sbjct: 351 QLEEALALIETVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHHAGACVFLSN 410

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
            YAA  +WD  +E+R  + +  I K PG S++E++GVV+EF++GD SHPQ+  IY  LDE
Sbjct: 411 AYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLDE 470

Query: 620 MTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
           +   L   G+ P   EV  D+ EEDKE  + QHSEKLA+A GLIS+  G  IRIVKNLR+
Sbjct: 471 VCKTLSLKGHRPSTKEVAFDIDEEDKEVCISQHSEKLALALGLISTRRGAVIRIVKNLRI 530

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C DCH + K+VS VYDR ++VRD+ RFHHFK+GSCSC DYW
Sbjct: 531 CEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKNGSCSCLDYW 571



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 179/391 (45%), Gaps = 54/391 (13%)

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV-RPDNYTFPFLLKGFTRDIAVE---- 132
           P+   +NT I+  +        V +Y  ML + +  P+NYT+P LL    R +       
Sbjct: 55  PTTFSYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPRE 114

Query: 133 --FGKELHCHVLKFGFDS-SVFVQNALISTYCLCGEVDMARGIFDVSYKD--DVVTWNAM 187
              G  +H  + + G +S   F+  +++S Y   G++  AR +FD S  +  D+  WN++
Sbjct: 115 AAAGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSL 174

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-VKECK 246
              Y     +    +LF +M    V    VT++ V+SAC+ L  LD G+ AH Y  + C+
Sbjct: 175 LHAYLSQGLYTHVLRLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCR 230

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
                 L  AL +MY  CG++  A  +F  + +KDV +W+ ++ G    G          
Sbjct: 231 NTTR-NLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNG---------- 279

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
            +P                    R+AL LF EM+   + PD  T+ ++L+AC++ G ++ 
Sbjct: 280 -LP--------------------RDALKLFAEMKNIGVDPDSITMTAVLSACSHAGMVDE 318

Query: 367 GE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGL 424
           G+ ++     +  ++  I     ++D+  + G +E+A  +   +  + D   W A++V  
Sbjct: 319 GKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVALWGALLV-- 376

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           A   H  K++DM  QM    I+  +  + G 
Sbjct: 377 ACRAH--KNVDM-GQMAAMEILKLDPHHAGA 404



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 12/274 (4%)

Query: 35  IHSQTIKLGLLT-NPTVQNKLVTFCCSEKGDMKYACKVFRKIP--RPSVCLWNTMIKGYS 91
           +H+   + GL + +  +   +++F  +  GD+  A +VF + P  +  + LWN+++  Y 
Sbjct: 121 VHASLFRRGLESRDRFISASMLSFYAA-AGDLPAAREVFDRSPPNQRDLALWNSLLHAYL 179

Query: 92  RIDSHKNGVLIY-LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
                  G+  + L + +  V  D  T   ++   +   A++ G+  H +  +   +++ 
Sbjct: 180 -----SQGLYTHVLRLFRQMVATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTR 234

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            +  AL++ Y  CG+V+ A  +F      DV TW+ M +G        +  KLF EM+  
Sbjct: 235 NLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNI 294

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKR-AHRYVKECKIVPNLILENALTDMYAACGEMGF 269
           GV P S+T+  VLSAC+    +D GK   H    E  + P +     + D+    G++  
Sbjct: 295 GVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEE 354

Query: 270 ALEIFGNIKNK-DVISWTAIVTGYINRGQVDMAR 302
           AL +   +  K DV  W A++        VDM +
Sbjct: 355 ALALIETVPFKADVALWGALLVACRAHKNVDMGQ 388


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 253/720 (35%), Positives = 393/720 (54%), Gaps = 41/720 (5%)

Query: 9   PPSTLTQET-PLISPIETCESMHQLKQ---IHSQTIKLGLLTNPT-VQNKLVTFCCSEKG 63
           PP+     T  L S +++C     L++   +H++ +  G     T + N L+T   S   
Sbjct: 12  PPAPDAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMY-SHCA 70

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           D+  A ++F  +PR +   W T++ G S+   H + +  +  M ++ V P  +      +
Sbjct: 71  DLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAAR 130

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
                 A   G +LHC  ++ GFD+ +FV + L   Y  CG +  A  +FD   + D V 
Sbjct: 131 AAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVA 190

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKRAHRYV 242
           W AM  GY +    +     F +M+R+G++     +   VLSA   LKD  + K  H  V
Sbjct: 191 WTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCV 250

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +      + + NAL DMYA               K+ DV S + ++   I+ G  ++  
Sbjct: 251 TKAGFELEVAVRNALIDMYA---------------KSMDVESASRVLK--IDPGGWNV-- 291

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                      V  T+MIDGY+  +   EAL ++ E++   + P+EFT  S++  CA   
Sbjct: 292 -----------VSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQA 340

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            LE G  +   + K  +  D FVG+ L+DMY KCG +  + ++F E+  +    W A+I 
Sbjct: 341 LLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVIN 400

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
             A +GHG +++  F +M+ + I P+ + +V +L+AC+H G+VDEG +YF  M   HGIE
Sbjct: 401 VFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIE 460

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P E HY C++D  GRAG L+EA + I  MP+KPN+  W +LLGACR+    E+ E+AA+ 
Sbjct: 461 PKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQN 520

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           +++L+P N  ++V L  IYA+  +W++ + +R+++ D  IKK PG S ++ N   H F +
Sbjct: 521 LMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGS 580

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED--KERAVYQHSEKLAMAF 660
            D SHPQ K+IY KL+E+T+ +K  GY+PD S  FL    ED  KER +  HSE++A+AF
Sbjct: 581 EDWSHPQQKDIYEKLEELTTRIKEEGYIPDTS--FLPCNLEDIAKERILRYHSERIAVAF 638

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            LIS      I + KNLR+C+DCH   K +  V  R++IVRD +RFHHF +G CSC DYW
Sbjct: 639 ALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/523 (41%), Positives = 327/523 (62%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF +I RP++ +WN MI G S+ D   + +  Y  M    ++  + TF FL K   R   
Sbjct: 28  VFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSD 87

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           V  G+ +  H +K GF+S  FV NALI  Y   GE+ MA+ +FD   + DVV+WN++  G
Sbjct: 88  VRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICG 147

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y +  +F +   LF EM+   V   SVT++  +SA   L + ++G    +Y+ E  +V +
Sbjct: 148 YYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVD 207

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
           L L N L DMY   G + FA  +F  +K K+++SW A++ GY   G +  A++ F++MP 
Sbjct: 208 LYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPS 267

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           RD + WT+MI GY    +  EA+ LF+EM  S ++PDE T+ + L+ACA+LG+L+ GE V
Sbjct: 268 RDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAV 327

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             YI K+ +K+D+FVGN+LIDMYCKCG VEKA +VF +M  +D  +WT++I GLA+NG  
Sbjct: 328 HDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFA 387

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           + +L++F QML+  I P   T+VGVL AC H G+VD+G E+F  M   + + P   HYGC
Sbjct: 388 ESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGC 447

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           +VDLL R+G+L+ A   IK MP+ P+ ++W  LL AC++H +  +AE+ +K++L LDP N
Sbjct: 448 VVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSN 507

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
              YVL  + YA  +RWD+  ++R+++    ++K    S IE+
Sbjct: 508 NGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEV 550



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 193/408 (47%), Gaps = 64/408 (15%)

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
           A  +F+   +  ++ WN M  G  +  + ++    +  M  KG+  + +T + +  +CA+
Sbjct: 25  AHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCAR 84

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           + D+  G+    +  +        + NAL  MY   GE+  A ++F  +  +DV+SW +I
Sbjct: 85  VSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSI 144

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           +                                GY + NRF++ L LFREMQ  N+R D 
Sbjct: 145 IC-------------------------------GYYQFNRFKKVLDLFREMQAINVRADS 173

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM---------------- 392
            T++  ++A   L   E+G+++  YID++ V  D+++GN LIDM                
Sbjct: 174 VTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQ 233

Query: 393 ---------------YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
                          Y K G++  A+++F EM  +D  +WT+MI+G ++     +++ +F
Sbjct: 234 MKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLF 293

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
            +M+ + + PDE+T    LSAC H G +D G E   D   +H I+ +      ++D+  +
Sbjct: 294 QEMMVSMVKPDEITVATALSACAHLGSLDAG-EAVHDYIRKHDIKSDVFVGNSLIDMYCK 352

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            G + +AL+V  +M  + +S+ W +++    V+  AE A     Q+L+
Sbjct: 353 CGVVEKALQVFNDMKTR-DSVSWTSIISGLAVNGFAESALNVFDQMLK 399



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 197/434 (45%), Gaps = 71/434 (16%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
           Q+ ++HS  +KLG  +   V N L+  + C   G++  A KVF  +    V  WN++I G
Sbjct: 92  QMVRVHS--MKLGFESXSFVSNALIHMYVCF--GELAMAQKVFDGMLERDVVSWNSIICG 147

Query: 90  YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
           Y + +  K  + ++ +M   +VR D+ T    +         E G  L  ++ + G    
Sbjct: 148 YYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVD 207

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV--------------- 194
           +++ N LI  Y   G +D A  +F    + ++V+WNAM  GY +V               
Sbjct: 208 LYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPS 267

Query: 195 ----------------KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
                           KQ  E  KLF EM    V P  +T+   LSACA L  LD G+  
Sbjct: 268 RDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAV 327

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H Y+++  I  ++ + N+L DMY  CG +  AL++F ++K +D +SWT+I++G       
Sbjct: 328 HDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISG------- 380

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFREMQTSNIRPDEFTIVSILTA 357
                                    L VN F E AL +F +M    I P   T V +L A
Sbjct: 381 -------------------------LAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLA 415

Query: 358 CANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKF 415
           CA++G ++ G E  K+  +  ++  ++     ++D+ C+ G ++ A    ++M +  D  
Sbjct: 416 CAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVV 475

Query: 416 TWTAMIVGLAINGH 429
            W  ++    ++G+
Sbjct: 476 IWRILLSACKLHGN 489



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 139/292 (47%), Gaps = 13/292 (4%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G++  A K+F ++P   V  W +MI GYS    H   V ++ +M+ S V+PD  T    L
Sbjct: 253 GNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATAL 312

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
                  +++ G+ +H ++ K    S VFV N+LI  YC CG V+ A  +F+     D V
Sbjct: 313 SACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSV 372

Query: 183 TWNAMFSGYKRVKQFDETR-KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           +W ++ SG   V  F E+   +F +M ++G+ PT  T V VL ACA +  +D G    + 
Sbjct: 373 SWTSIISGLA-VNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKS 431

Query: 242 VKEC-KIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVD 299
           ++   ++ P +     + D+    G +  A      +    DV+ W  +++     G + 
Sbjct: 432 MENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLV 491

Query: 300 MAR------QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           +A          D     +YVL ++   G    +R+ + + + + M+ +N++
Sbjct: 492 LAEIVSKKLLVLDPSNNGNYVLSSSTYAG---SDRWDDVIKIRKLMEVTNLQ 540


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/440 (47%), Positives = 286/440 (65%)

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           DV+SWT +V G    G VD AR+ FD MP R+ V W +MI GY++ +RF +AL +F EM+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
              +  + F   S L AC   GAL  G  +  +++++ ++ D  +  A++DMYCKCG V+
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
           +A  VF  +  +   TW  MI G A++G  D +L++F QM  A + PD+VT + VL+AC 
Sbjct: 283 EAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
           H G V EGR Y   +  +HGIEP   HYGCMVDL GRAG L+EA +VI  MPM P+  V 
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402

Query: 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
           GALLGAC++H D ++ E    ++++LDPDN   YVLL N+ A   RWD   ++R+++ +R
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 581 GIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV 640
            + K  G S+IE++G   EF  G+  HPQ +EIY    +M S ++  GY+PD  E   DV
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 641 GEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIV 700
            EEDKE A+  HSEKLA+AFGL+ + P  T+RI KNLR+C DCH   K VS V+ RE++V
Sbjct: 523 AEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVV 582

Query: 701 RDKTRFHHFKHGSCSCKDYW 720
           RD++RFHHFK G CSCKDYW
Sbjct: 583 RDRSRFHHFKDGMCSCKDYW 602



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 131/285 (45%), Gaps = 11/285 (3%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A +VF  +P  ++  WN+MI GY + D   + + ++ +M    V  + +     L   T 
Sbjct: 183 AREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACTG 242

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             A+  G+E++  V + G +    +  A++  YC CG VD A G+FD      + TWN M
Sbjct: 243 AGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCM 302

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR-AHRYVKECK 246
             G+    + D+  +LF +ME  GV P  VT++ VL+ACA   ++  G+R  +  V    
Sbjct: 303 IGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHG 362

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMAR--- 302
           I P       + D++   G++  A ++   +  + D+    A++      G VD+     
Sbjct: 363 IEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEAIG 422

Query: 303 -QYFDQMPERD--YVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
            +  D  P+    YVL   ++ G     R+ E   + R M   N+
Sbjct: 423 WRVIDLDPDNSGRYVLLANLLAG---AGRWDEVGKVRRLMDERNV 464


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/716 (32%), Positives = 389/716 (54%), Gaps = 42/716 (5%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV----TFCCSEKGDM 65
           P  +T  T L+S  +   ++ ++ QIHS  I+ G   +  V N LV      CC     +
Sbjct: 141 PDHITFAT-LLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCC-----L 194

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             A ++F ++P      +N MI GY++    +  + +++ M   D +P  +TF  +L   
Sbjct: 195 DIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMS 254

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
                V FG+++H   +K  +   +FV NAL+  Y     +D+A+ +FD   + D V++N
Sbjct: 255 VGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYN 314

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
            + +GY    Q++++  LF  ++       +     +LS  A   +L +G++ H      
Sbjct: 315 IIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVT 374

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
             V  + + NAL DMYA C +   A  IF N                             
Sbjct: 375 TAVSEVQVGNALVDMYAKCEKFEDANRIFAN----------------------------- 405

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
             +  R+ V WTA+I  Y++     EAL +F+EM   N+  D+ T  S L A ANL ++ 
Sbjct: 406 --LAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVS 463

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
           LG+ + + + +  + + +F G+ L+DMY  CG ++ A  VF+EM  ++   W A+I   +
Sbjct: 464 LGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYS 523

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
            NG  + +   F+ M+ + + PD V+++ VL+AC+H G+V++   YF  MT  + ++P  
Sbjct: 524 QNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRR 583

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HY  M+D+L R+G  NEA  +I  MP +P+ ++W ++L +CR+H++ ++A+ AA Q+ +
Sbjct: 584 KHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFK 643

Query: 546 LDP-DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           +D   + A YV + NIYA   +W+N  ++++ + +RG+KK    S +E++  VH F A D
Sbjct: 644 MDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTAND 703

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           ++HPQT++I  K++ +   +   GY PD S    +V EE K  ++  HSE+LA+AF LI+
Sbjct: 704 RTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALIN 763

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +  G  I I+KNLR CVDCH   K++S +  RE+ VRD +RFHHF+ GSCSC DYW
Sbjct: 764 TPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 127/532 (23%), Positives = 217/532 (40%), Gaps = 82/532 (15%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           ++K+   P+   F F LK   R   +   ++L    + +   SSV   N ++S Y     
Sbjct: 37  IVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDE-MPYRNTSSV---NMMVSGYVKSRN 92

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           +  AR +F+  +  + V+W  M  GY +  Q  E   L+ EM R GV P  +T   +LS 
Sbjct: 93  LFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSG 152

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
                 L    + H ++       +LI+ N+L D Y     +  A ++F  +  KD +S+
Sbjct: 153 FDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSF 212

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDY-------------------------------- 313
             ++TGY   G  + A + F QM   D+                                
Sbjct: 213 NVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIK 272

Query: 314 --VLW-----TAMIDGYLRVNRFREALTLFREM--------------------------- 339
              +W      A++D Y + +    A  LF EM                           
Sbjct: 273 TSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDL 332

Query: 340 ----QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
               Q ++     F   ++L+  A    L +G             +++ VGNAL+DMY K
Sbjct: 333 FKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAK 392

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           C   E A R+F  +  ++   WTA+I      G  +++L MF +M R ++  D+ T+   
Sbjct: 393 CEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFAST 452

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           L A  +   V  G++  + + I+ G+  +      +VD+    G + +A+EV K MP + 
Sbjct: 453 LKASANLASVSLGKQLHSSV-IRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDR- 510

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAACN 565
           N + W AL+ A   + DAE    +   ++E  L PD+    V   ++  AC+
Sbjct: 511 NIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDS----VSFLSVLTACS 558


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/709 (34%), Positives = 376/709 (53%), Gaps = 41/709 (5%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            +S +  C S   L   + IH   ++ GL     V + LV+      G ++ A  +F  +
Sbjct: 131 FVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMY-GRCGSLRDANALFGHL 189

Query: 76  PRP-SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
            R   V LWN MI   S+  S +  + I+  ML+  + PD  TF  + K  +   ++   
Sbjct: 190 ERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRAS 249

Query: 135 --KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
             K  H  + + G  S V V  AL++ Y  CGE+D AR  F    + + V+W +M + + 
Sbjct: 250 QVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFA 309

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           ++       + F  M  +GV+PT  T+   L  C   +DL   +      +E  +  ++ 
Sbjct: 310 QIGHLLAV-ETFHAMLLEGVVPTRSTLFAALEGC---EDLHTARLVEAIAQEIGVATDVA 365

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +   L   YA C     A+ +F                          AR+      E D
Sbjct: 366 IVTDLVMAYARCDGQEDAIRVFS-------------------------AREE----GEWD 396

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
             L TAMI  Y +    R    L+       I PD    ++ L ACA+L AL  G  +  
Sbjct: 397 AALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHA 456

Query: 373 YIDKNK-VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            +  ++ +  D+ +GNA++ MY +CG +  A+  F  M  +D+ +W AM+   A +G  +
Sbjct: 457 CVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVE 516

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
              D+F  ML+     + V ++ +LSAC H G+V+ G E+F+ MT  HG+ P   HYGCM
Sbjct: 517 DCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEHFSAMTGDHGVVPATEHYGCM 576

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGR G L +A  +++ MP+ P++  W AL+GACR++ D E    AA+++LEL  ++ 
Sbjct: 577 VDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRANHT 636

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
           A YV LCNIY+A  RW++   +R+++ D G++K PG S IE+   VHEFV  D+SHPQ++
Sbjct: 637 AAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSE 696

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            IY +L+ +   ++  GY     EV  DV EE KE+ +  HSEKLA+AFG++S+  G T+
Sbjct: 697 AIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTL 756

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R++KNLR+CVDCH  +K +S V+ RE++VRD  RFHHFK G+CSC DYW
Sbjct: 757 RVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 7/193 (3%)

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
            D ++ ++L+ MY +CG +E A  VF ++  K    WT +I      GH   ++ +F ++
Sbjct: 60  RDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRI 119

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           L+  I  D + +V VLSAC+    +  GR       ++ G+   E     +V + GR G 
Sbjct: 120 LQEGIALDAIVFVSVLSACSSEEFLAAGR-LIHRCAVEAGLGLQEIVASALVSMYGRCGS 178

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD--PDNEAVYVLLC 558
           L +A  +  ++    + ++W A++ A   +     A     ++L+L   PD     V   
Sbjct: 179 LRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPD----LVTFV 234

Query: 559 NIYAACNRWDNFR 571
           +++ AC+   + R
Sbjct: 235 SVFKACSSSPSLR 247


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/717 (33%), Positives = 388/717 (54%), Gaps = 50/717 (6%)

Query: 19  LISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            I+ + +C   ES+    +IH   +   L  +P V N L+     + G + +A +VF K+
Sbjct: 148 FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMY-KKCGSLSHAKRVFAKM 206

Query: 76  PRP-SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
            R  +V  W+ M   ++   +    +  +  ML   ++        +L   +    V+ G
Sbjct: 207 ERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG 266

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYK 192
           + +H  +   GF+S + V NA+++ Y  CG V+ AR +FD       DVV+WN M S Y 
Sbjct: 267 RLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYV 326

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
              +  +  +L+  M+ +      VT V +LSAC+  +D+ +G+  H+ +   ++  N+I
Sbjct: 327 HNDRGKDAIQLYQRMQLRA---DKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVI 383

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + NAL  MYA C                               G    AR  FD+M +R 
Sbjct: 384 VGNALVSMYAKC-------------------------------GSHTEARAVFDKMEQRS 412

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREM-------QTSNIRPDEFTIVSILTACANLGALE 365
            + WT +I  Y+R     EA  LF++M        +  ++PD    V+IL ACA++ ALE
Sbjct: 413 IISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALE 472

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIVGL 424
            G+ V        + +D  VG A++++Y KCG++E+ +R+F  +  R D   W AMI   
Sbjct: 473 QGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVY 532

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH-GIEP 483
           A  G   ++L +F +M    + PD  ++V +L AC+HTG+ D+G+ YF  MT ++  +  
Sbjct: 533 AQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTR 592

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              H+GC+ DLLGR G L EA E ++ +P+KP+++ W +LL ACR HRD + A+  A ++
Sbjct: 593 TIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKL 652

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           L L+P     YV L NIYA   +W    ++R+ + ++G+KK  G S IE+   +H+F  G
Sbjct: 653 LRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATG 712

Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
           D +HP+ +EI  +L ++ S +K  GY+PD   V   V E++KER ++ HSE+LA+A GLI
Sbjct: 713 DDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLI 772

Query: 664 SSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S+  G  +R+ KNLR+C DCH   KL+S +  R+++VRD TRFH FK G CSC+DYW
Sbjct: 773 STPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 211/457 (46%), Gaps = 42/457 (9%)

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF-DSSVFVQNALISTYCL 162
           LD+ K  VR +N T+  LL+   R  A+  G+++H   +K      ++ + N ++S Y  
Sbjct: 32  LDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAH 91

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
           C     A+  FD   + ++ +W  + + +    Q  ET +    M + GV P +VT +  
Sbjct: 92  CDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITA 151

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI-KNKD 281
           L +C   + L  G R H+ V + ++  +  + NAL +MY  CG +  A  +F  + + ++
Sbjct: 152 LGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRN 211

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           VISW+ +   +   G V                 W              EAL  FR M  
Sbjct: 212 VISWSIMAGAHALHGNV-----------------W--------------EALRHFRFMLL 240

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             I+  +  +V+IL+AC++   ++ G  + + I  +  ++++ V NA++ MY +CG VE+
Sbjct: 241 LGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEE 300

Query: 402 AQRVFREM--LRKDKFTWTAMIVGLAINGHGDKSLDMFSQM-LRASIIPDEVTYVGVLSA 458
           A++VF  M    +D  +W  M+     N  G  ++ ++ +M LRA    D+VTYV +LSA
Sbjct: 301 ARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRA----DKVTYVSLLSA 356

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C+    V  GR       +   +E N      +V +  + G   EA  V   M  + + I
Sbjct: 357 CSSAEDVGLGR-VLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQR-SII 414

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
            W  ++ A    R    A    +Q+LEL+ +  +  V
Sbjct: 415 SWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRV 451



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 195/445 (43%), Gaps = 55/445 (12%)

Query: 16  ETPLISPIETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           ++ +++ +  C S   +   + IHS     G  +   V N ++T      G ++ A KVF
Sbjct: 247 KSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMY-GRCGAVEEARKVF 305

Query: 73  RKIPRP--SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
             +      V  WN M+  Y   D  K+ + +Y  M    +R D  T+  LL   +    
Sbjct: 306 DAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRM---QLRADKVTYVSLLSACSSAED 362

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           V  G+ LH  ++    + +V V NAL+S Y  CG    AR +FD   +  +++W  + S 
Sbjct: 363 VGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISA 422

Query: 191 YKRVKQFDETRKLFGEM---ERKG----VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           Y R +   E   LF +M   E+ G    V P ++  V +L+ACA +  L+ GK       
Sbjct: 423 YVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAA 482

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMAR 302
            C +  +  +  A+ ++Y  CGE+     IF  + ++ DV  W A++  Y   GQ     
Sbjct: 483 SCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQS---- 538

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                       EAL LF  M+   +RPD F+ VSIL AC++ G
Sbjct: 539 ---------------------------HEALKLFWRMEMEGVRPDSFSFVSILLACSHTG 571

Query: 363 ALELGE--WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTA 419
             + G+  +     +   V   I     + D+  + G +++A+    ++ ++ D   WT+
Sbjct: 572 LEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTS 631

Query: 420 MIVGLAINGHGD--KSLDMFSQMLR 442
           ++   A   H D  ++ ++ +++LR
Sbjct: 632 LLA--ACRNHRDLKRAKEVANKLLR 654



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 194/422 (45%), Gaps = 48/422 (11%)

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP-NLILENALTDMYAAC 264
           ++E++ V   + T   +L  CA+ + L  G++ H    +  ++P NLIL N +  MYA C
Sbjct: 33  DLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHC 92

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
              G A                               +  FD + +R+   WT ++  + 
Sbjct: 93  DSPGDA-------------------------------KAAFDALEQRNLYSWTGLVAAFA 121

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
              + +E L     M+   +RPD  T ++ L +C +  +L  G  +   +  ++++ D  
Sbjct: 122 ISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPK 181

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLR-KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
           V NAL++MY KCG +  A+RVF +M R ++  +W+ M    A++G+  ++L  F  ML  
Sbjct: 182 VSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLL 241

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            I   +   V +LSAC+   +V +GR   + + +  G E        ++ + GR G + E
Sbjct: 242 GIKATKSAMVTILSACSSPALVQDGRLIHSCIALS-GFESELLVANAVMTMYGRCGAVEE 300

Query: 504 ALEVIKNMPMKPNSIV-WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           A +V   M      +V W  +L A  VH D     +   Q ++L  D     V   ++ +
Sbjct: 301 ARKVFDAMDEALRDVVSWNIMLSA-YVHNDRGKDAIQLYQRMQLRADK----VTYVSLLS 355

Query: 563 ACNRWDNF---RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           AC+  ++    R L + I++  ++K    ++I  N +V  + A   SH + + ++ K+++
Sbjct: 356 ACSSAEDVGLGRVLHKQIVNDELEK----NVIVGNALVSMY-AKCGSHTEARAVFDKMEQ 410

Query: 620 MT 621
            +
Sbjct: 411 RS 412


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/621 (36%), Positives = 359/621 (57%), Gaps = 7/621 (1%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIP 76
           PL++ +E+C S  +  Q+H+     GL  +    ++L+ FC  S    + +A  +  +  
Sbjct: 39  PLLALLESCASFPRFLQLHALLTVSGLAAHRFPASRLLAFCALSTPPRVDHAAAILARAS 98

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI---AVEF 133
            P+  +  TM++ + R         ++  +++  +  D  T  F +K    +    +   
Sbjct: 99  APNAYMLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSG 158

Query: 134 GKELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           G+ +HC  LK+G    SV V NAL+  Y     +  AR +FD     DVV+W  +  GY 
Sbjct: 159 GEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYA 218

Query: 193 RVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
           R    DE  ++F  M   G L P  VT+V V+SA  ++  L  G+  +RYV +  +  ++
Sbjct: 219 RRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSV 278

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            LENAL DM+   G    A E+F ++  KDV SWT +V  Y   G ++ A + FD MP R
Sbjct: 279 NLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRR 338

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV- 370
           + V W+ MI  Y + N+  EA+ LF+ M    + P    +VS+L+ACA LG L+LG W+ 
Sbjct: 339 NAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIY 398

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
             Y+   K    + +GNA ID+Y KCGD + A ++F EM  ++  +W +MI+  A++G  
Sbjct: 399 DNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQS 458

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           ++ L +F Q+    I+PDE+T++G+LSAC+H+G+V EGR YF +M + +GIEP   HY C
Sbjct: 459 EEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYAC 518

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           M+DLLG+ G L EA EV K MPM+ +   WGALL ACR++ + E+ E AA ++++L+P +
Sbjct: 519 MIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQLNPLD 578

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
             +YVL+  IYA+ N+WD  + LR ++ +RG+KK PGCS IE++G  HEF+  D SH  +
Sbjct: 579 SGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEVDGKFHEFLVADVSHVHS 638

Query: 611 KEIYLKLDEMTSDLKFVGYMP 631
           ++IY  L  +   LK+ GY+P
Sbjct: 639 EDIYAALKNIYFHLKWEGYVP 659


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/615 (36%), Positives = 344/615 (55%), Gaps = 37/615 (6%)

Query: 111 VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170
           V P      + L+    + A+  GK +H H++  GF SS ++ N L+  Y  CG +  A+
Sbjct: 53  VSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAK 112

Query: 171 GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK 230
            +F ++ + +V +W  M + +     + +   L   M+ +G+ P S+T + +L A A L 
Sbjct: 113 SVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALS 172

Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
            LD G+  HR +  C  + ++ + N L +MYA C  +  A  +F ++ ++ VI+      
Sbjct: 173 WLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIA------ 226

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
                                    WTA++  Y     FR+AL +F  M    + P E T
Sbjct: 227 -------------------------WTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVT 261

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
            V+++  CA++    +G  V   ID     N + VGNALI+MY KC   ++A++VF  M 
Sbjct: 262 FVTVVDVCADIAVFGIGREVHGVIDARSEAN-VCVGNALINMYGKCASPDEARKVFDAMQ 320

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA-----SIIPDEVTYVGVLSACTHTGMV 465
           RKD  TW +MI     NG+G ++L+++ +M  +      I  D++T++GVL AC+H G+V
Sbjct: 321 RKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFACSHAGLV 380

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
            +  + ++ M   +G +P     GC++DLLGRAG L+EA E I +MP  P+  +W  LLG
Sbjct: 381 KDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHTIWTILLG 440

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           AC  H D E A  AA +I+ L P +   YV L N+YA   RWD+   +R+++  RG+ K 
Sbjct: 441 ACITHADVERAARAADRIMALRPTDSGSYVALSNLYALAERWDDMARMRKLMDQRGVFKM 500

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
            G S IE+ GV+HEF+AGD SHP+ +EIY +L  +   ++  GY+PDI  V  +   E K
Sbjct: 501 AGKSSIEIGGVLHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDIKAVLHNAAREAK 560

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           E+    HSE+LA+AFG+ISS  G  +RI+KNLR+C DCH   K++S    R++IVRD  R
Sbjct: 561 EKMCCFHSERLAIAFGMISSPGGTELRIMKNLRVCPDCHSATKIISKFSGRKIIVRDANR 620

Query: 706 FHHFKHGSCSCKDYW 720
           FH F++GSCSC+DYW
Sbjct: 621 FHEFRNGSCSCEDYW 635



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 188/437 (43%), Gaps = 42/437 (9%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCES---MHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           +  + S+SP + +     L   +  C S   + + K+IH   +  G  ++  + N LV  
Sbjct: 47  LLEDRSVSPSAEV-----LAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEM 101

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNY 116
              + G ++ A  VF   PR +V  W  M+  ++  + H    L  L+++  + + P++ 
Sbjct: 102 Y-GKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAH-NGHYMDALNLLEIMDLEGISPNSI 159

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           TF  LL        ++ G+ LH  +   GF + +FV N LI+ Y  C  +  A  +F+  
Sbjct: 160 TFIELLGAVAALSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESL 219

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
               V+ W A+ + Y     F +  K+F  M   GV PT VT V V+  CA +    +G+
Sbjct: 220 TSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGR 279

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
             H  + + +   N+ + NAL +MY  C     A ++F  ++ KD+I+W +++  Y   G
Sbjct: 280 EVHGVI-DARSEANVCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNG 338

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
               A + + +M E                            M    I  D+ T + +L 
Sbjct: 339 YGFQALEIYKRMQE--------------------------SRMTILGITHDDITFIGVLF 372

Query: 357 ACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
           AC++ G ++   +   + I     K        LID+  + G +++A+     M    D 
Sbjct: 373 ACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDH 432

Query: 415 FTWTAMIVGLAINGHGD 431
             WT +++G  I  H D
Sbjct: 433 TIWT-ILLGACIT-HAD 447



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 131/319 (41%), Gaps = 34/319 (10%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           +E + V P++  +   L  C     +  GKR H ++  C    +  L N L +MY  CG 
Sbjct: 48  LEDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGS 107

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +  A  +F     ++V SWT +V  + + G                              
Sbjct: 108 LQAAKSVFHITPRRNVFSWTIMVAAFAHNGH----------------------------- 138

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
             + +AL L   M    I P+  T + +L A A L  L+ G  +   I       DIFV 
Sbjct: 139 --YMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGRALHRRIACCGFLADIFVA 196

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           N LI+MY KC  +  A  VF  +  +    WTA++   A+NG    +L +F  M    + 
Sbjct: 197 NCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVE 256

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P EVT+V V+  C    +   GRE      I    E N      ++++ G+    +EA +
Sbjct: 257 PTEVTFVTVVDVCADIAVFGIGREVHG--VIDARSEANVCVGNALINMYGKCASPDEARK 314

Query: 507 VIKNMPMKPNSIVWGALLG 525
           V   M  K + I W +++ 
Sbjct: 315 VFDAMQRK-DIITWNSMIA 332



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 23/207 (11%)

Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
            R+A+ L   ++  ++ P    +   L  C +  A+  G+ +  +I     K+  ++ N 
Sbjct: 41  LRDAVQL---LEDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNL 97

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           L++MY KCG ++ A+ VF    R++ F+WT M+   A NGH   +L++   M    I P+
Sbjct: 98  LVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPN 157

Query: 449 EVTYVGVLSACTHTGMVDEGRE---------YFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
            +T++ +L A      +D GR          + AD+ + +          C++++  +  
Sbjct: 158 SITFIELLGAVAALSWLDRGRALHRRIACCGFLADIFVAN----------CLINMYAKCR 207

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGA 526
            L +A  V +++  + + I W AL+ A
Sbjct: 208 SLADACSVFESLTSR-SVIAWTALVAA 233


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/551 (41%), Positives = 331/551 (60%), Gaps = 46/551 (8%)

Query: 183 TWNAMFSGYKRVKQFDET-----RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           TWN +   Y +     +      + +  E E + + P   T   VL ACA L  L  GK+
Sbjct: 48  TWNILIQSYSKSTLHKQKAILLYKAIITEQENE-LFPDKHTYPFVLKACAYLFSLFEGKQ 106

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H +V +     +  + N+L   YA+CG +                              
Sbjct: 107 VHAHVLKLGFELDTYICNSLIHFYASCGYL------------------------------ 136

Query: 298 VDMARQYFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
            + AR+ FD+M E R+ V W  MID Y +V  +   L +F EM      PD +T+ S++ 
Sbjct: 137 -ETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIR 194

Query: 357 ACANLGALELGEWVKTYIDKNKVKN---DIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           AC  LG+L LG WV  ++ K   KN   D+ V   L+DMYCKCG +E A++VF  M  +D
Sbjct: 195 ACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRD 254

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYF 472
             +W ++I+G A++G    +LD F +M++   I+P+ +T+VGVLSAC H+GMVDEG  YF
Sbjct: 255 VSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYF 314

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC-RVHR 531
             MT ++ +EP+  HYGC+VDL  RAGH+ EAL V+  MP+KP++++W +LL AC + H 
Sbjct: 315 EMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHA 374

Query: 532 DAEMAEMAAKQILELDPD-NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590
             E++E  AKQI E +       YVLL  +YA+ +RW++   LR+++ D+G+ K PGCS+
Sbjct: 375 SVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSL 434

Query: 591 IEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV-FLDVGEEDKERAV 649
           IE+NG  HEF AGD +HPQ+K+IY  ++E+   L+ VGY+PD S    +D   E K+  +
Sbjct: 435 IEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEGKQNTM 494

Query: 650 YQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHF 709
             HSE+LA+AFGL++S P + IR+ KNLR+C DCH++ KL+S +Y+ E+IVRD+ RFHHF
Sbjct: 495 RLHSERLAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDRVRFHHF 554

Query: 710 KHGSCSCKDYW 720
           K GSCSC DYW
Sbjct: 555 KDGSCSCMDYW 565



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 180/362 (49%), Gaps = 41/362 (11%)

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKN-GVLIYLDML---KSDVRPDNYTFPFLLKGF 125
           ++ R I  P+   WN +I+ YS+   HK   +L+Y  ++   ++++ PD +T+PF+LK  
Sbjct: 36  QILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKAC 95

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTW 184
               ++  GK++H HVLK GF+   ++ N+LI  Y  CG ++ AR +FD +    +VV+W
Sbjct: 96  AYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSW 155

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-K 243
           N M   Y +V  +D    +F EM  K   P   T+  V+ AC  L  L +G   H +V K
Sbjct: 156 NVMIDSYAKVGDYDIVLIMFCEM-MKVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLK 214

Query: 244 EC--KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           +C   +V ++++   L DMY  CG +  A ++F  +  +DV SW +I+ G+   G+   A
Sbjct: 215 KCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAA 274

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
             YF +M                              ++   I P+  T V +L+AC + 
Sbjct: 275 LDYFVRM------------------------------VKVEKIVPNSITFVGVLSACNHS 304

Query: 362 GALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTA 419
           G ++ G  + +    +  V+  +     L+D+Y + G +++A  V  EM ++ D   W +
Sbjct: 305 GMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRS 364

Query: 420 MI 421
           ++
Sbjct: 365 LL 366



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 142/293 (48%), Gaps = 10/293 (3%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF-RKIPRPSVCLWNTM 86
           S+ + KQ+H+  +KLG   +  + N L+ F  S  G ++ A KVF R     +V  WN M
Sbjct: 100 SLFEGKQVHAHVLKLGFELDTYICNSLIHFYAS-CGYLETARKVFDRMCEWRNVVSWNVM 158

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK--- 143
           I  Y+++  +   ++++ +M+K    PD YT   +++      ++  G  +H  VLK   
Sbjct: 159 IDSYAKVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCD 217

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
                 V V   L+  YC CG +++A+ +F+     DV +WN++  G+    +       
Sbjct: 218 KNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDY 277

Query: 204 FGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMY 261
           F  M + + ++P S+T V VLSAC     +D G      + KE  + P+L+    L D+Y
Sbjct: 278 FVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLY 337

Query: 262 AACGEMGFALEIFGNIKNK-DVISWTAIVTG-YINRGQVDMARQYFDQMPERD 312
           A  G +  AL +   +  K D + W +++   Y     V+++ +   Q+ E +
Sbjct: 338 ARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHASVELSEEMAKQIFESN 390


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/710 (34%), Positives = 392/710 (55%), Gaps = 15/710 (2%)

Query: 13  LTQETP-LISPIETCESMHQ---LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           +T E P L+S +     + +   L+ IH    K G   +  V   ++     +   +  A
Sbjct: 219 MTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSA 278

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYL-DMLKSDVRPDNYTFPFLLKGFTR 127
            K F  +   +   W+T+I   S+     +   +Y  D LKS   P   +   +L G  R
Sbjct: 279 VKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKS--VPSRTS---MLTGLAR 333

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
              ++  K L   +     + +V   NA+I+ Y     VD A  +F+     + ++W  M
Sbjct: 334 YGRIDDAKILFDQI----HEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGM 389

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            +GY R  + ++       + RKG+LP+  ++     AC+ ++ L+ GK+ H    +   
Sbjct: 390 IAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGC 449

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             N  + NAL  +Y     +G   +IF  +  KD +S+ + ++  +     D AR  F+ 
Sbjct: 450 QFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNN 509

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           MP  D V WT +I    + ++  EA+ +FR M      P+   +  +L    NLGA +LG
Sbjct: 510 MPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLG 569

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
           + + T   K  + + + V NAL+ MY KC   + + +VF  M  +D FTW  +I G A +
Sbjct: 570 QQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITGYAQH 628

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
           G G +++ M+  M+ A ++P+EVT+VG+L AC+H+G+VDEG ++F  M+  +G+ P   H
Sbjct: 629 GLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEH 688

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           Y CMVDLLGRAG +  A   I +MP++P+S++W ALLGAC++H++ E+   AA+++  ++
Sbjct: 689 YACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIE 748

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P N   YV+L NIY++   WD   ++R+++ +RG+ K PGCS +++   +H FV GD+ H
Sbjct: 749 PSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEH 808

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
            Q + IY  L E+ + LK  GY+PD   V  D+ EE KE ++  HSEKLA+A+GL+ +  
Sbjct: 809 EQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPK 868

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           G+ I+I+KNLR+C DCH   K VS V  RE+ VRD  RFHHF++GSCSC+
Sbjct: 869 GMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSCE 918



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 183/386 (47%), Gaps = 19/386 (4%)

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
            Q+A I      G +  AR +FD     D++ WN+M   Y      D  R L   +   G
Sbjct: 35  AQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAIS-GG 93

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
            L T   ++   +   +++D        R V +   V N +  NA+   Y   G++  A 
Sbjct: 94  NLRTGTILLSGYARAGRVRDA-------RRVFDGMGVRNTVAWNAMVTCYVQNGDITLAR 146

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           ++F  + ++DV SW  ++TGY +   ++ AR  F++MPER+ V WT MI GY+ + +   
Sbjct: 147 KLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGR 206

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           A  +FR M    + P++  +VS+L+A  +LG   + E +   + K   + D+ VG A+++
Sbjct: 207 AWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILN 266

Query: 392 MYCK-CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
            Y K    ++ A + F  M  ++++TW+ +I  L+  G  D +  ++ +    S +P   
Sbjct: 267 GYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKS-VPSRT 325

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           +   +L+     G +D+ +  F  +      EPN   +  M+    +   ++EA ++   
Sbjct: 326 S---MLTGLARYGRIDDAKILFDQIH-----EPNVVSWNAMITGYMQNEMVDEAEDLFNR 377

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMA 536
           MP + N+I W  ++     +  +E A
Sbjct: 378 MPFR-NTISWAGMIAGYARNGRSEQA 402



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 192/449 (42%), Gaps = 50/449 (11%)

Query: 54  LVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP 113
           L  +C S+   M+ A  +F ++P  +   W  MI GY  I+ H     ++  ML   + P
Sbjct: 164 LTGYCHSQL--MEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTP 221

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL-CGEVDMARGI 172
           +      +L            + +H  V K GF+  V V  A+++ Y      +D A   
Sbjct: 222 EQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKF 281

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           F+     +  TW+ + +   +  + D+   ++     K V P+  +++  L+   ++ D 
Sbjct: 282 FEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PSRTSMLTGLARYGRIDDA 340

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
            +                                      +F  I   +V+SW A++TGY
Sbjct: 341 KI--------------------------------------LFDQIHEPNVVSWNAMITGY 362

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
           +    VD A   F++MP R+ + W  MI GY R  R  +AL   + +    + P   ++ 
Sbjct: 363 MQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLT 422

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           S   AC+N+ ALE G+ V +   K   + + +V NALI +Y K   +   +++F  M  K
Sbjct: 423 SSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVK 482

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D  ++ + +  L  N   D++ D+F+ M      PD V++  ++SAC      +E  E F
Sbjct: 483 DTVSYNSFMSALVQNNLFDEARDVFNNMPS----PDVVSWTTIISACAQADQGNEAVEIF 538

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
             M  +  + PN      +  LLG +G+L
Sbjct: 539 RSMLHEREL-PNPP---ILTILLGLSGNL 563


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/662 (36%), Positives = 369/662 (55%), Gaps = 49/662 (7%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
           + G++  A KVF  +P  +V  W  ++KGY     H   V +   +       +  ++  
Sbjct: 91  KNGEIDEARKVFDLMPERNVVSWTALVKGYV----HNGKVDVAESLFWKMPEKNKVSWTV 146

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +L GF +D  ++      C + +   D     + ++I   C  G VD AR IFD   +  
Sbjct: 147 MLIGFLQDGRIDDA----CKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERS 202

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           V+TW  M +GY +  + D+ RK+F  M  K    T V+   +L                 
Sbjct: 203 VITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMG--------------- 243

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
                               Y   G +  A E+F  +  K VI+  A+++G   +G++  
Sbjct: 244 --------------------YVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAK 283

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           AR+ FD M ER+   W  +I  + R     EAL LF  MQ   +RP   T++SIL+ CA+
Sbjct: 284 ARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCAS 343

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           L +L  G+ V   + + +   D++V + L+ MY KCG++ K++ +F     KD   W ++
Sbjct: 344 LASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSI 403

Query: 421 IVGLAINGHGDKSLDMFSQM-LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
           I G A +G G+++L +F +M L  S  P+EVT+V  LSAC++ GMV+EG + +  M    
Sbjct: 404 ISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVF 463

Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           G++P  AHY CMVD+LGRAG  NEA+E+I +M ++P++ VWG+LLGACR H   ++AE  
Sbjct: 464 GVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFC 523

Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
           AK+++E++P+N   Y+LL N+YA+  RW +  ELR+++  R ++K+PGCS  E+   VH 
Sbjct: 524 AKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHA 583

Query: 600 FVAGD-KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
           F  G   SHP+ + I   LDE+   L+  GY PD S    DV EE+K  ++  HSE+LA+
Sbjct: 584 FTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAV 643

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           A+ L+    G+ IR++KNLR+C DCH   K++S V +RE+I+RD  RFHHF++G CSCKD
Sbjct: 644 AYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKD 703

Query: 719 YW 720
           YW
Sbjct: 704 YW 705



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 128/532 (24%), Positives = 210/532 (39%), Gaps = 131/532 (24%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           L++ +S TI       P   N  +T   S  G +  A K+F      S+  WN+M+ GY 
Sbjct: 7   LRRTYSTTIP------PPTANVRITHL-SRIGKIHEARKLFDSCDSKSISSWNSMVAGY- 58

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
                      + +++  D R      P                           D ++ 
Sbjct: 59  -----------FANLMPRDARKLFDEMP---------------------------DRNII 80

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
             N L+S Y   GE+D AR +FD+  + +VV+W A+  GY    + D    LF +M  K 
Sbjct: 81  SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKN 140

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL--ILENALTDMYAACGEMGF 269
            +  +V ++        L+D  +      Y    +++P+   I   ++       G +  
Sbjct: 141 KVSWTVMLI------GFLQDGRIDDACKLY----EMIPDKDNIARTSMIHGLCKEGRVDE 190

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           A EIF  +  + VI+WT +VTGY    +VD AR+ FD MPE+  V WT+M+ GY++  R 
Sbjct: 191 AREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRI 250

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
            +A  LF  M    ++P        + AC                            NA+
Sbjct: 251 EDAEELFEVMP---VKP--------VIAC----------------------------NAM 271

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
           I    + G++ KA+RVF  M  ++  +W  +I     NG   ++LD+F  M +  + P  
Sbjct: 272 ISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTF 331

Query: 450 VTYVGVLSACTHTGMVDEGRE--------------YFADMTIQHGIEPNE---------- 485
            T + +LS C     +  G++              Y A + +   I+  E          
Sbjct: 332 PTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDR 391

Query: 486 ------AHYGCMVDLLGRAGHLNEALEVIKNMPM----KPNSIVWGALLGAC 527
                   +  ++      G   EAL+V   MP+    KPN + + A L AC
Sbjct: 392 FPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSAC 443



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 133/323 (41%), Gaps = 62/323 (19%)

Query: 19  LISPIETCESM---HQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           LIS +  C S+   H  KQ+H+Q ++     +  V + L+T    + G++  +  +F + 
Sbjct: 334 LISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYI-KCGELVKSKLIFDRF 392

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM-LKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
           P   + +WN++I GY+     +  + ++ +M L    +P+  TF   L   +    VE G
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEG 452

Query: 135 KELHCHVLKFGFDSSVFVQNALISTY-CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
            +++  +       SVF    + + Y C+   VDM                        R
Sbjct: 453 LKIYESM------ESVFGVKPITAHYACM---VDM----------------------LGR 481

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
             +F+E  ++   M    V P +     +L AC     LDV +   + + E  I P    
Sbjct: 482 AGRFNEAMEMIDSMT---VEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIE--IEP---- 532

Query: 254 ENA-----LTDMYAACGEMGFALEIFGNIKNKDV-----ISWTAIVTGYINRGQVDMARQ 303
           EN+     L++MYA+ G      E+   +K + V      SWT +     N+      R 
Sbjct: 533 ENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVE----NKVHA-FTRG 587

Query: 304 YFDQMPERDYVLWTA-MIDGYLR 325
             +  PE++ +L     +DG LR
Sbjct: 588 GINSHPEQESILKILDELDGLLR 610


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/622 (37%), Positives = 358/622 (57%), Gaps = 35/622 (5%)

Query: 101 LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY 160
           L+ + +L  +V+ + Y    +L       A+  G+ +H H++K  +  SV+++  LI  Y
Sbjct: 78  LLQMAILGREVKFEGYDT--ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLY 135

Query: 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220
             C  +  AR +FD   + +VV+W AM S Y +     E   LF EM R    P   T  
Sbjct: 136 NKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFA 195

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            +L++C      + G++ H    +     ++ + ++L DMYA                  
Sbjct: 196 TILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYA------------------ 237

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
                          G++  A   F  +PERD V  TA+I GY ++    EAL LFR++Q
Sbjct: 238 -------------KSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQ 284

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
              +  +  T  S+LTA + L AL  G+ V +++ ++   + + + N+LIDMY KCG+V 
Sbjct: 285 IEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVC 344

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTYVGVLSAC 459
            A+R+F  M  +   +W AM+VG + +G   + L++F  M   + + PD +TY+ VLS C
Sbjct: 345 YARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGC 404

Query: 460 THTGMVDEGREYFADMTI-QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           +H  + D G E F +M   + GIEP+  HYGC+VDLLGRAG + EA + IK MP  P + 
Sbjct: 405 SHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAA 464

Query: 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
           +WG+LLG+CRVH D E+  +  +++LEL+P+N   YV+L N+YA+  +W++ R +R ++ 
Sbjct: 465 IWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQ 524

Query: 579 DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL 638
           ++ + K PG S +E++ +VH F A D +HP+ +E+  K+ E++   K  GY+PD+S V  
Sbjct: 525 EKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLY 584

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
           DV EE KE+ +  HSEKLA+AFGLI++  G TIR++KNLR+CVDCH  AK VS +Y R V
Sbjct: 585 DVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTV 644

Query: 699 IVRDKTRFHHFKHGSCSCKDYW 720
           I+RDK RFH+   G CSC DYW
Sbjct: 645 ILRDKNRFHNIVGGVCSCGDYW 666



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 200/402 (49%), Gaps = 45/402 (11%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNT 85
           ++ + +++H+  IK   L +  ++ +L+     C   GD +   ++F ++P+ +V  W  
Sbjct: 105 AIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAR---EMFDEMPQKNVVSWTA 161

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           MI  YS+       + ++++ML+SD  P+++TF  +L      +  E G+++H   +K  
Sbjct: 162 MISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRN 221

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           ++S +FV ++L+  Y   G +  A G+F    + DVV   A+ SGY ++   +E  KLF 
Sbjct: 222 YESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFR 281

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
           +++ +G+   SVT   VL+A + L  L+ GK+ H +V        ++L N+L DMY+ CG
Sbjct: 282 QLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCG 341

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
            + +A  IF ++  +  ISW A++ GY   G                             
Sbjct: 342 NVCYARRIFDSMPERTCISWNAMLVGYSKHGMA--------------------------- 374

Query: 326 VNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALE---LGEWVKTYIDKNKVKN 381
               RE L LF+ M+  N ++PD  T +++L+ C++ G LE   L  +      K+ ++ 
Sbjct: 375 ----REVLELFKLMREENKVKPDSITYLAVLSGCSH-GQLEDMGLEIFYNMVNGKDGIEP 429

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           DI     ++D+  + G VE+A     + ++K  F  TA I G
Sbjct: 430 DIGHYGCVVDLLGRAGRVEEA----FDFIKKMPFVPTAAIWG 467


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/586 (37%), Positives = 338/586 (57%), Gaps = 31/586 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K++H  V   G    + V N L+       ++  A  +F+   + D V+W+ M  G+ + 
Sbjct: 20  KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN 79

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
             ++   + F E+ R G  P + ++  V+ AC     L +G+  H  V +  +  +  + 
Sbjct: 80  GDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVC 139

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           + L DMYA CG                                +D A+Q FD+MP++D V
Sbjct: 140 STLVDMYAKCG-------------------------------MIDNAKQLFDRMPKKDLV 168

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
             T MI GY    +  E+  LF +M+     PD+  +V+I+ ACA LGA+     V  Y+
Sbjct: 169 TRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYV 228

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
              +   D+ +G A+IDMY KCG ++ ++ +F  M +K+  +W+AMI     +G G ++L
Sbjct: 229 CARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREAL 288

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++F  ML + IIP+ +T++ +L AC+H G+VD+G + F+ M++ +G+ P+  HY CMVDL
Sbjct: 289 ELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDL 348

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGRAG L++AL +I+NM ++ +  +W A LGACR+HR  ++AE AAK +L L   N   Y
Sbjct: 349 LGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHY 408

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           +LL NIYA   RW +  ++R ++  R +KK PG + IE++ +++ F AGD SH ++ EIY
Sbjct: 409 ILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIY 468

Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
             L  ++  L+  GY+PD + V  DV EE K   ++ HSEKLA+AFGLI++  G  IRI 
Sbjct: 469 EMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRIT 528

Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           KNLR+C DCH   KLVS +  R++IVRD  RFHHFK G CSC DYW
Sbjct: 529 KNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 205/405 (50%), Gaps = 34/405 (8%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
            IS +  C ++ Q+KQ+H+Q    G++ +  V NKL+  C   K D+  A  +F K+   
Sbjct: 6   FISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHK-DLVTAHLLFNKMEER 64

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
               W+ MI G+ +   ++     + +++++  +PDN++ PF++K     + +  G+ +H
Sbjct: 65  DPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIH 124

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
             VLK G     FV + L+  Y  CG +D A+ +FD   K D+VT   M +GY    + +
Sbjct: 125 STVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPN 184

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E+  LF +M R G +P  V +V +++ACAKL  ++  +  H YV   +   ++ L  A+ 
Sbjct: 185 ESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMI 244

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA CG +  + EIF  ++ K+VISW+A++  Y   GQ                     
Sbjct: 245 DMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQ--------------------- 283

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN- 377
                      REAL LF  M  S I P+  T +S+L AC++ G ++ G  + + +  + 
Sbjct: 284 ----------GREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSY 333

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            V+ D+     ++D+  + G +++A R+   M + KD+  W A +
Sbjct: 334 GVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFL 378


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/727 (32%), Positives = 387/727 (53%), Gaps = 74/727 (10%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A +VF + P     LWNT++    R +  ++ + ++  M  +  +  + T   LL+   +
Sbjct: 185 ANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGK 244

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV------------ 175
             A+  GK++H +V++FG  S+  + N+++S Y     +++AR  FD             
Sbjct: 245 LRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSI 304

Query: 176 --SY---------------------KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             SY                     K D++TWN++ SG+     ++     F  ++  G 
Sbjct: 305 ISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGF 364

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P S +I   L A   L   ++GK  H Y+   K+  ++ +  +L D Y     +  A  
Sbjct: 365 KPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEV 424

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER--------------------- 311
           +F + KNK++ +W ++++GY  +G  D A +  +QM E                      
Sbjct: 425 VFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGR 484

Query: 312 ------------------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
                             + V WTAMI G  +   + +AL  F +MQ  N++P+  TI +
Sbjct: 485 SEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICT 544

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L ACA    L++GE +  +  ++   +DI++  ALIDMY K G ++ A  VFR +  K 
Sbjct: 545 LLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKT 604

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
              W  M++G AI GHG++   +F +M +  + PD +T+  +LS C ++G+V +G +YF 
Sbjct: 605 LPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFD 664

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
            M   + I P   HY CMVDLLG+AG L+EAL+ I  +P K ++ +WGA+L ACR+H+D 
Sbjct: 665 SMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRLHKDI 724

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           ++AE+AA+ +L L+P N A Y L+ NIY+  +RW +   L++ +   G+K     S I++
Sbjct: 725 KIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGVKIPNVWSWIQV 784

Query: 594 NGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHS 653
              +H F    KSHP+  EIY +L ++ S++K +GY+ DI+ V  ++ + +KE+ +  H+
Sbjct: 785 KQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINCVHQNIDDSEKEKVLLSHT 844

Query: 654 EKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
           EKLAM +GL+ +  G  IR+VKN R+C DCH  AK +S+  +RE+ +RD  RFHHF +G 
Sbjct: 845 EKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARNREIFLRDGGRFHHFMNGE 904

Query: 714 CSCKDYW 720
           CSCKD W
Sbjct: 905 CSCKDRW 911



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/535 (25%), Positives = 255/535 (47%), Gaps = 13/535 (2%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
           + S+   SPP    + +P   P     +++ ++++H+Q IK+    N    +  +     
Sbjct: 20  LVSSPQFSPP----KFSPFFHPFGEIRTLNSVRELHAQIIKMPKKRNLVTMDGSMMRNYL 75

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFP 119
           + GD + A KVF      +  LWN+ I+ ++      + +L ++ ++    V+ D+    
Sbjct: 76  QFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKALT 135

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +LK     + +  G E+H  ++K GF   V +  ALI+ Y     +D A  +FD +   
Sbjct: 136 VVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQ 195

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           +   WN +     R +++++  +LF  M+      T  TIV +L AC KL+ L+ GK+ H
Sbjct: 196 EDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIH 255

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY-IN---R 295
            YV     V N  + N++  MY+    +  A   F + ++ +  SW +I++ Y +N    
Sbjct: 256 GYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLN 315

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G  D+ ++      + D + W +++ G+L    +   LT FR +Q++  +PD  +I S L
Sbjct: 316 GAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSAL 375

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
            A   LG   LG+ +  YI ++K++ D++V  +L+D Y K   ++KA+ VF     K+  
Sbjct: 376 QAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNIC 435

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
            W ++I G    G  D +  + +QM    I PD VT+  ++S  + +G  +E       +
Sbjct: 436 AWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRI 495

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP---MKPNSIVWGALLGAC 527
               G+ PN   +  M+    +  +  +AL+    M    +KPNS     LL AC
Sbjct: 496 K-SLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRAC 549



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 15  QETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKV 71
             T + + +  C     LK   +IH  +++ G L +  +   L+     + G +K A +V
Sbjct: 538 NSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMY-GKGGKLKVAHEV 596

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLD-MLKSDVRPDNYTFPFLLKG 124
           FR I   ++  WN M+ GY+ I  H   V    D M K+ VRPD  TF  LL G
Sbjct: 597 FRNIKEKTLPCWNCMMMGYA-IYGHGEEVFTLFDEMRKTGVRPDAITFTALLSG 649


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 259/749 (34%), Positives = 386/749 (51%), Gaps = 82/749 (10%)

Query: 42  LGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101
            GL     + + LV F     G+  +A +VF K+P   V  WN M+ GY +    +  + 
Sbjct: 127 FGLRLGNAMLSMLVRF-----GETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALD 181

Query: 102 IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC 161
           +Y  M+ + VRPD YTFP +L+          G+E+H HVL+FGF   V V NAL++ Y 
Sbjct: 182 LYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYA 241

Query: 162 LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221
            CG+V  AR +FD     D ++WNAM +G+    + +   +LF  M +  V P  +TI  
Sbjct: 242 KCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITS 301

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           V  A   L D+   K  H    +     ++   N+L  MYA+ G MG A  +F  +  +D
Sbjct: 302 VTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRD 361

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERD----------------------------- 312
            +SWTA+++GY   G  D A + +  M   +                             
Sbjct: 362 AMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHE 421

Query: 313 ---------YVLWT-AMIDGYLRVNRFREALTLFREM----------------------- 339
                    YV+ T A+++ Y +  R  +A+ +F+ M                       
Sbjct: 422 LAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFE 481

Query: 340 -------QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
                    ++++P+  T ++ L ACA  GAL  G+ +  ++ +  +  + ++ NALID+
Sbjct: 482 ALYYFRHMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDL 541

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG    A   F     KD  +W  MI G   +G+G+ +L  F+QM++    PDEVT+
Sbjct: 542 YVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTF 601

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           V +L AC+  GMV EG E F  MT ++ I PN  HY CMVDLL R G L EA   I  MP
Sbjct: 602 VALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMP 661

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572
           + P++ VWGALL  CR+HR  E+ E+AAK +LEL+P++   +VLLC++YA    WD    
Sbjct: 662 ITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYADAGIWDKLAR 721

Query: 573 LRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           +R+ + ++G+    GCS +E+ GVVH F+  D+SHPQ +EI   L+ +   +K  G  P 
Sbjct: 722 VRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYERMKASGCAPV 781

Query: 633 ISEVFLDVGEED---KERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKL 689
            S        ED   K+     HSE+LA+AFGLI++ PG +I + KN   C  CHR+ K+
Sbjct: 782 ESH-----SPEDKVLKDDIFCGHSERLAVAFGLINTTPGTSISVTKNQYTCQSCHRILKM 836

Query: 690 VSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           +S +  R++IVRD  + HHFK GSCSC D
Sbjct: 837 ISYIVRRDIIVRDSKQVHHFKDGSCSCGD 865



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 132/318 (41%), Gaps = 33/318 (10%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           +E     P     V +   C   + ++ G RA  +  +      L L NA+  M    GE
Sbjct: 85  LESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGE 144

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
              A  +F  +  +DV SW  +V GY   G ++                           
Sbjct: 145 TWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLE--------------------------- 177

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
               EAL L+  M  + +RPD +T   +L +C  +    +G  V  ++ +     ++ V 
Sbjct: 178 ----EALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVL 233

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           NAL+ MY KCGDV  A++VF  M   D  +W AMI G   NG  +  L++F  ML+  + 
Sbjct: 234 NALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQ 293

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           P+ +T   V  A      +   +E    + ++ G   + A    ++ +    G + +A  
Sbjct: 294 PNLMTITSVTVASGLLSDITFAKEMHG-LAVKRGFATDVAFCNSLIQMYASLGMMGQART 352

Query: 507 VIKNMPMKPNSIVWGALL 524
           V   M  + +++ W A++
Sbjct: 353 VFSRMDTR-DAMSWTAMI 369



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 2/188 (1%)

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           +++S   PDE   V++   C    A+E G     + D       + +GNA++ M  + G+
Sbjct: 85  LESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGE 144

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
              A RVF +M  +D F+W  M+ G    G  +++LD++ +M+ A + PD  T+  VL +
Sbjct: 145 TWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRS 204

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           C        GRE  A + ++ G          ++ +  + G +  A +V  +M +  + I
Sbjct: 205 CGGVPDWRMGREVHAHV-LRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVM-DCI 262

Query: 519 VWGALLGA 526
            W A++  
Sbjct: 263 SWNAMIAG 270


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/683 (35%), Positives = 379/683 (55%), Gaps = 42/683 (6%)

Query: 12  TLTQETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLV------------- 55
           +    +P    ++TC   +S+ + + +H++ IK    +   +QN+LV             
Sbjct: 15  SFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDAR 74

Query: 56  ----------TF-------CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKN 98
                     TF         ++ G +  A  +F+ +P    C WN M+ G+++ D  + 
Sbjct: 75  KVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEE 134

Query: 99  GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
            +   +DM   D   + Y+F   L      + +  G ++H  + K  +   V++ +AL+ 
Sbjct: 135 ALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVD 194

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y  C  V  A+  FD     ++V+WN++ + Y++     +  ++F  M   G+ P  +T
Sbjct: 195 MYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEIT 254

Query: 219 IVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           +  V SACA L  +  G + H R +K  K   +L+L NAL DMYA C  +  A  +F  +
Sbjct: 255 LASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRM 314

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
             +DV+S T++V+GY     V  AR  F  M ER+ V W A+I GY +     EA+ LF 
Sbjct: 315 PLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFL 374

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV------KNDIFVGNALID 391
            ++  +I P  +T  ++L ACANL  L+LG    T+I K+         +DIFVGN+LID
Sbjct: 375 LLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLID 434

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCG VE  + VF  ML +D  +W AMIVG A NG+G ++L++F +ML +   PD VT
Sbjct: 435 MYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVT 494

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
            +GVLSAC+H G+V+EGR YF  MTI+HG+ P + HY CMVDLLGRAG L+EA  +I+ M
Sbjct: 495 MIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTM 554

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           PM+P+++VWG+LL AC+VH +  + +  A+++LE+DP N   YVLL N+YA   RW +  
Sbjct: 555 PMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVV 614

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            +R+ +   G+ K PGCS I +   +H F+  DK HP  K+IYL L  +T  +K VGY+P
Sbjct: 615 RVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMKRVGYVP 674

Query: 632 DISEVFLDVGEEDKERAVYQHSE 654
           +  +   +  EE+ +  +  HSE
Sbjct: 675 EADDD--EPYEEESDSELILHSE 695


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/608 (37%), Positives = 350/608 (57%), Gaps = 52/608 (8%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC----GEVDMARGIF 173
            P L+    +   ++  K++  + +K  + ++  V    I+ +C        ++ A  +F
Sbjct: 26  LPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFIN-FCTSNPTKASMEHAHQLF 84

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233
           D   + ++V +N M  GY R+   ++  ++     R             L   +K+K L 
Sbjct: 85  DQITQPNIVLFNTMARGYARL---NDPLRMITHFRR------------CLRLVSKVKALA 129

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
            GK+ H +  +  +  N+ +   L +MY ACG+                           
Sbjct: 130 EGKQLHCFAVKLGVSDNMYVVPTLINMYTACGD--------------------------- 162

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
               +D +R+ FD++ E   V + A+I    R NR  EAL LFRE+Q   ++P + T++ 
Sbjct: 163 ----IDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLV 218

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L++CA LG+L+LG W+  Y+ K      + V   LIDMY KCG ++ A  VFR+M ++D
Sbjct: 219 VLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRD 278

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
              W+A+IV  A +G G +++ M ++M +  + PDE+T++G+L AC+H G+V+EG EYF 
Sbjct: 279 TQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFH 338

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
            MT ++GI P+  HYGCMVDLLGRAG L+EA + I  +P+KP  I+W  LL AC  H + 
Sbjct: 339 GMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNV 398

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           EM +   ++I ELD  +   YV+  N+ A   +WD+   LR+ ++D+G  K PGCS IE+
Sbjct: 399 EMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEV 458

Query: 594 NGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFL-DVGEEDKERAVYQH 652
           N VVHEF AG+  H  +  ++  LDE+  +LK  GY+PD S VF  D+ +E+KE  +  H
Sbjct: 459 NNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYH 518

Query: 653 SEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHG 712
           SEKLA+ FGL+++ PG TIR+VKNLR+C DCH  AK +S+++ R++I+RD  RFHHFK G
Sbjct: 519 SEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDG 578

Query: 713 SCSCKDYW 720
            CSC DYW
Sbjct: 579 KCSCGDYW 586



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 219/436 (50%), Gaps = 54/436 (12%)

Query: 2   FSNSSISPPSTLTQE----TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
            ++ S++ P+T T        LIS I  C ++ +LKQI + TIK     N  V  K + F
Sbjct: 8   LTSFSLTKPNTETTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINF 67

Query: 58  CCSE--KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN 115
           C S   K  M++A ++F +I +P++ L+NTM +GY+R++         L M+        
Sbjct: 68  CTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDP-------LRMITH------ 114

Query: 116 YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV 175
             F   L+  ++  A+  GK+LHC  +K G   +++V   LI+ Y  CG++D +R +FD 
Sbjct: 115 --FRRCLRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDK 172

Query: 176 SYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
             +  VV +NA+     R  + +E   LF E++  G+ PT VT+++VLS+CA L  LD+G
Sbjct: 173 IDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLG 232

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           +  H YVK+      + +   L DMYA CG +  A+ +F ++  +D  +W+AI+  Y   
Sbjct: 233 RWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATH 292

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G                        DG+       +A+++  EM+   ++PDE T + IL
Sbjct: 293 G------------------------DGF-------QAISMLNEMKKEKVQPDEITFLGIL 321

Query: 356 TACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKD 413
            AC++ G +E G E+     ++  +   I     ++D+  + G +++A +   E+ ++  
Sbjct: 322 YACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPT 381

Query: 414 KFTWTAMIVGLAINGH 429
              W  ++   + +G+
Sbjct: 382 PILWRTLLSACSTHGN 397


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/593 (37%), Positives = 345/593 (58%), Gaps = 33/593 (5%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A+  G+ +H H++K  +  + +++  L+  Y  C  ++ AR + D   + +VV+W AM S
Sbjct: 66  ALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMIS 125

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
            Y +     E   +F EM R    P   T   VL++C +   L +GK+ H  + +     
Sbjct: 126 RYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDS 185

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ + ++L DMYA  G                               Q++ AR+ F+ +P
Sbjct: 186 HIFVGSSLLDMYAKAG-------------------------------QIEEAREIFECLP 214

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ERD V  TA+I GY ++    EAL +F+ +Q+  +RP+  T  S+LTA + L  L+ G+ 
Sbjct: 215 ERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQ 274

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
              ++ + ++     + N+LIDMY KCG++  AQR+F  M  +   +W AM+VG + +G 
Sbjct: 275 AHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGL 334

Query: 430 GDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI-QHGIEPNEAH 487
           G + L++F  M     + PD VT + VLS C+H  M D G   +  M   ++GI+P+  H
Sbjct: 335 GREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEH 394

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           YGC+VD+LGRAG ++EA E IK MP KP + V G+LLGACRVH   ++ E    +++E++
Sbjct: 395 YGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIE 454

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P+N   YV+L N+YA+  RW++   +R M++ + + K PG S I+    +H F A D++H
Sbjct: 455 PENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTH 514

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P+ +E+  K+ E++  +K  GY+PDIS V  DV EE KE+ +  HSEKLA+ FGLI++G 
Sbjct: 515 PRREEVLAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGE 574

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G+ IR+ KNLR+CVDCH  AK+ S V++REV +RDK RFH    G CSC DYW
Sbjct: 575 GIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 203/401 (50%), Gaps = 43/401 (10%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD-MKYACKVFRKIPRPSVCLWNTM 86
           ++ + +++H+  IK   L    ++ +L+ F    K D ++ A KV  ++P  +V  W  M
Sbjct: 66  ALREGQRVHAHMIKTRYLPATYLRTRLLIF--YGKCDCLEDARKVLDEMPEKNVVSWTAM 123

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF 146
           I  YS+       + ++ +M++SD +P+ +TF  +L    R   +  GK++H  ++K+ +
Sbjct: 124 ISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNY 183

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE 206
           DS +FV ++L+  Y   G+++ AR IF+   + DVV+  A+ +GY ++   +E  ++F  
Sbjct: 184 DSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQR 243

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           ++ +G+ P  VT   +L+A + L  LD GK+AH +V   ++    +L+N+L DMY+ CG 
Sbjct: 244 LQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGN 303

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           + +A  +F N+  +  ISW A++ GY   G                              
Sbjct: 304 LSYAQRLFDNMPERTAISWNAMLVGYSKHGL----------------------------- 334

Query: 327 NRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGALE---LGEWVKTYIDKNKVKND 382
              RE L LFR M+    ++PD  T++++L+ C++ G +E   L  +      +  +K D
Sbjct: 335 --GREVLELFRLMRDEKRVKPDAVTLLAVLSGCSH-GKMEDTGLSIYDGMVAGEYGIKPD 391

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
                 ++DM  + G +++A    + M  K     TA ++G
Sbjct: 392 TEHYGCIVDMLGRAGRIDEAFEFIKRMPSKP----TAGVLG 428



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 5/274 (1%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+  T  T L S I     +   KQIH   +K    ++  V + L+    ++ G ++ A 
Sbjct: 150 PNEFTFATVLTSCIRA-SGLALGKQIHGLIVKWNYDSHIFVGSSLLDMY-AKAGQIEEAR 207

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           ++F  +P   V     +I GY+++   +  + ++  +    +RP+  T+  LL   +   
Sbjct: 208 EIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLA 267

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            ++ GK+ HCHVL+        +QN+LI  Y  CG +  A+ +FD   +   ++WNAM  
Sbjct: 268 LLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLV 327

Query: 190 GYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH--RYVKECK 246
           GY +     E  +LF  M + K V P +VT++ VLS C+  K  D G   +      E  
Sbjct: 328 GYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYG 387

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
           I P+      + DM    G +  A E    + +K
Sbjct: 388 IKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSK 421



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 108/228 (47%), Gaps = 1/228 (0%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           ++L AC +  AL  G+ V  ++ K +     ++   L+  Y KC  +E A++V  EM  K
Sbjct: 56  ALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 115

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           +  +WTAMI   +  GH  ++L +F++M+R+   P+E T+  VL++C     +  G++  
Sbjct: 116 NVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIH 175

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
             + ++   + +      ++D+  +AG + EA E+ + +P +        + G  ++  D
Sbjct: 176 G-LIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLD 234

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
            E  EM  +   E    N   Y  L    +     D+ ++    +L R
Sbjct: 235 EEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRR 282


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/588 (39%), Positives = 334/588 (56%), Gaps = 38/588 (6%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM--ARGIFDVSYKDDVVTWNAMFSGYKR 193
           +LH  +LK G  +       L+ +        +  AR IFD+    D   +N +   +  
Sbjct: 6   KLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHAD 65

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                       +M   GV P   T   VL ACA+L+    G   H  + +     ++ +
Sbjct: 66  SSPSFSLSLF-SKMAMAGVSPDHFTFPFVLKACARLQ---TGLDLHSLLFKLGFDSDVYV 121

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
           +N L   Y  CG + FAL++                               F++MPERD 
Sbjct: 122 QNGLIHFYGCCGFLDFALKV-------------------------------FEEMPERDL 150

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELGEWVKT 372
           V W++MI  + +     EAL LF+ MQ    ++PDE  ++S+++A + LG LELG+W++ 
Sbjct: 151 VSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRG 210

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           +I +N ++  + +G AL+DM+ +CG +E++ RVF EM  ++  TWTA+I GLA++G   +
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAE 270

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L MF +M      PD VT+ GVL AC+H G+V EG   F  +  ++G+EP   HYGCMV
Sbjct: 271 ALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMV 330

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGRAG LNEA + +  MP++PNSI+W  LLGAC  H   E+AE   ++I ELD  ++ 
Sbjct: 331 DLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDG 390

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVLL N+Y    RW     +R  + ++ I K PGCS+I +N ++HEFVAGD +HPQ + 
Sbjct: 391 DYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFES 450

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I   L  M   LK VGY PDIS V  D+ EE+KE  +  HSEKLA+AF L+      TIR
Sbjct: 451 IREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIR 510

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++KNLR+C DCH   K  S V++RE+I+RD+ RFHHF  GSCSC+DYW
Sbjct: 511 VMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 194/404 (48%), Gaps = 42/404 (10%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           M+ + ++H++ +K G   +P    +L+  C  S    + YA  +F  I  P    +NT+I
Sbjct: 1   MNHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTII 60

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           + ++        + ++  M  + V PD++TFPF+LK   R   ++ G +LH  + K GFD
Sbjct: 61  RAHADSSP-SFSLSLFSKMAMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFD 116

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           S V+VQN LI  Y  CG +D A  +F+   + D+V+W++M + + +     E   LF  M
Sbjct: 117 SDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRM 176

Query: 208 ERKG-VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           +  G V P  V ++ V+SA + L DL++GK    ++    +   + L  AL DM++ CG 
Sbjct: 177 QLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGC 236

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +  ++ +F  +  ++V++WTA++ G    G                              
Sbjct: 237 IEESMRVFDEMGERNVLTWTALINGLAVHG------------------------------ 266

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
            R  EAL +F EM+    +PD  T   +L AC++ G +  G  V   I +N+   +    
Sbjct: 267 -RSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESI-RNEYGMEPLPE 324

Query: 387 N--ALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
           +   ++D+  + G + +A +    M +R +   W  ++ G  +N
Sbjct: 325 HYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLL-GACVN 367



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 146/333 (43%), Gaps = 17/333 (5%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF--CCSEKGDMKYACKVFRKIPRPSV 80
           ++ C  +     +HS   KLG  ++  VQN L+ F  CC   G + +A KVF ++P   +
Sbjct: 94  LKACARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCC---GFLDFALKVFEEMPERDL 150

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDM-LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
             W++MI  +++       + ++  M L   V+PD      ++   +    +E GK +  
Sbjct: 151 VSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRG 210

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            + + G + +V +  AL+  +  CG ++ +  +FD   + +V+TW A+ +G     +  E
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAE 270

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALT 258
             ++F EM   G  P  VT   VL AC+    +  G      ++ E  + P       + 
Sbjct: 271 ALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMV 330

Query: 259 DMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQY------FDQMPER 311
           D+    G +  A +    +  + + I W  ++   +N   +++A +        D   + 
Sbjct: 331 DLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDG 390

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           DYVL + +  G   V R+ E   +   M+   I
Sbjct: 391 DYVLLSNVYGG---VGRWAEKAGVRNSMREKRI 420


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/601 (38%), Positives = 348/601 (57%), Gaps = 50/601 (8%)

Query: 136 ELHCHVLKFGFDS-SVFVQNALISTYCL------CGEVDMARGIFD-VSYKDDVVTWNAM 187
           +LH   +K G  +   FV   L  T C         ++  AR +FD +    DVV +N +
Sbjct: 49  QLHAAAVKSGLQAHPAFVTRLL--TLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTL 106

Query: 188 FSGYKRVKQF-------DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
             GY R           +E  ++F  M  +GV P + T V +L ACA  +  + G++AH 
Sbjct: 107 LRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHG 166

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
              +     +  +   L +MYA CG+   A  +FG +  + V+S+ A             
Sbjct: 167 VAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNA------------- 213

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
                             MI   +R +R  EAL LFREMQ   ++    T++S+L+ACA 
Sbjct: 214 ------------------MITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACAL 255

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           LGALELG W+  Y+ K ++ + + V  ALIDMY KCG +E A  VF+ M  +D+  W+ M
Sbjct: 256 LGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVM 315

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           IV  A + +G +++ +F +M +  I PD+VT++GVL AC+H+G+V EG +YF  M  + G
Sbjct: 316 IVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMR-EFG 374

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           + P   HYGC+ DLL R+G L+ A E I  +P+KP +I+W  LL AC    DA++ +   
Sbjct: 375 LVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVF 434

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
           ++ILELD  +   YV+  N+ A   RW+    +R+++ ++G+ K PGCS IE++  VHEF
Sbjct: 435 ERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEF 494

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF-LDVGEEDKERAVYQHSEKLAMA 659
            AGD  HP++ +    +D +   LK  GY+P+ S VF +++GEE+K  ++  HSEKLA++
Sbjct: 495 FAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAIS 554

Query: 660 FGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDY 719
           FGL+++ PG T+R+VKNLR+C DCH MAKLVSMV++R +I+RD  RFHHF+ G CSC DY
Sbjct: 555 FGLLNTSPGTTLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDY 614

Query: 720 W 720
           W
Sbjct: 615 W 615



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 212/440 (48%), Gaps = 44/440 (10%)

Query: 15  QETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC----CSEKGDMKYACK 70
           Q+ PL+  +  C ++  L Q+H+  +K GL  +P    +L+T C     ++   + YA +
Sbjct: 30  QQHPLLPYLPQCTTLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQ 89

Query: 71  VFRKIPRPSVCLW-NTMIKGYSRIDSH-------KNGVLIYLDMLKSDVRPDNYTFPFLL 122
           VF +IP P   +W NT+++GY+R  +        +    +++ ML+  V PD YTF  LL
Sbjct: 90  VFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLL 149

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K      A E G++ H   +K G     +V   LI+ Y  CG+   AR +F     + VV
Sbjct: 150 KACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVV 209

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           ++NAM +   R  +  E   LF EM+ KG+  TSVT++ VLSACA L  L++G+  H YV
Sbjct: 210 SYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYV 269

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
           ++ ++   + +  AL DMY  CG +  A+ +F  ++++D  +W+ ++  Y N        
Sbjct: 270 RKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANH------- 322

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                   +  REA++LF EM+   I+PD+ T + +L AC++ G
Sbjct: 323 ------------------------SYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSG 358

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            +  G      + +  +   I     + D+  + G +++A     E+ ++     W  ++
Sbjct: 359 LVSEGLQYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLL 418

Query: 422 VGLAINGHGDKSLDMFSQML 441
                 G  D    +F ++L
Sbjct: 419 SACGSRGDADLGKQVFERIL 438


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/537 (40%), Positives = 327/537 (60%), Gaps = 2/537 (0%)

Query: 79  SVCLWNTMIKGY--SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           +V +WNTMI+    + + +    +L Y+  L++ +RP+ +TF +LLK       V+ G+E
Sbjct: 53  NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  V++ GF  S FV  AL+  Y  CG V   R +FD   +  +V W  +   Y  V  
Sbjct: 113 VHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTF 172

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            ++  +LF  M   G+ P  V +  V+SAC  L DL V K  H ++++  I  +  + + 
Sbjct: 173 PEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSST 232

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L   Y  CG + +A   F     K+++ W  ++   +    +++ +Q F  MP+RD V W
Sbjct: 233 LISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSW 292

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
            +MI G+ R+ +++EALT F EM+ S + P+  T++S L+ACA+ GAL+ G W+  Y+DK
Sbjct: 293 NSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDK 352

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           N +  D  + ++LIDMY KCGD++KA ++F E  R+D FTWT+++ GLA++G G+K+L  
Sbjct: 353 NDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHY 412

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           FS+M  A + PD+VT VGVLSAC H G++D+G  YF  M    G+ P   HYG MVDLLG
Sbjct: 413 FSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLG 472

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R G L EA ++I  MPM+ N I+WGA L ACRVH + E+ E+AA+++L L P +    V+
Sbjct: 473 RMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXPRDPWARVM 532

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           L N+YA   +WD    LR+ I  +G+KK+PGCS IE+NG VH F+ GD SHP   EI
Sbjct: 533 LSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYTEI 589



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 201/444 (45%), Gaps = 81/444 (18%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF--CCSEKGDMKYACKVFRKIP 76
           L+  + + + + + +++H+  ++ G   +  V   L+ F   C   G  +   +VF ++ 
Sbjct: 97  LLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGR---QVFDEMR 153

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--GFTRDIAVEFG 134
           +P + LW  +I+ Y  +   +  + ++  M +  + PD      ++   G   D+ V   
Sbjct: 154 QPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGV--A 211

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA------------------------- 169
           K +HC + K G +   FV + LISTY  CG +D A                         
Sbjct: 212 KAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEH 271

Query: 170 ------RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
                 + +F      DVV+WN+M  G+ R+ Q+ E    F EME  GV P ++T++  L
Sbjct: 272 NNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTL 331

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           SACA    LD G   H YV +  +  +  L+++L DMY+ CG++  A++IF     +D+ 
Sbjct: 332 SACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLF 391

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           +WT+IV G    G+ + A  YF +M E                               + 
Sbjct: 392 TWTSIVCGLAMHGRGEKALHYFSKMKE-------------------------------AQ 420

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDK-----NKVKNDIFVGNALIDMYCKCGD 398
           ++PD+ T+V +L+ACA+ G L+ G W    ++K      KV++       ++D+  + G 
Sbjct: 421 VQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHY----GXMVDLLGRMGC 476

Query: 399 VEKAQRVFREM-LRKDKFTWTAMI 421
           +++A  +   M +  ++  W A +
Sbjct: 477 LKEAYDLIMGMPMEANEIIWGAFL 500



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 7/277 (2%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           + LIS    C S+    +   +T     + N  V N ++     E  +++   ++F+ +P
Sbjct: 231 STLISTYGECGSLDYAYRFFQETP----MKNIVVWNTMIHQSV-EHNNLELGKQLFQSMP 285

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
              V  WN+MI G++RI  ++  +  + +M  S V P+  T    L       A++ G  
Sbjct: 286 DRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAW 345

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H +V K   +    + ++LI  Y  CG++D A  IF+ S + D+ TW ++  G     +
Sbjct: 346 IHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGR 405

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILEN 255
            ++    F +M+   V P  VT+V VLSACA    LD G    + +++   +VP +    
Sbjct: 406 GEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYG 465

Query: 256 ALTDMYAACGEMGFALE-IFGNIKNKDVISWTAIVTG 291
            + D+    G +  A + I G     + I W A ++ 
Sbjct: 466 XMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSA 502


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/587 (37%), Positives = 335/587 (57%), Gaps = 32/587 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           +++H H++  G   S  +   LIS  C  G +  AR +F      D   ++++     + 
Sbjct: 108 QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 167

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
               +T   +  M   G   ++ T   V+ ACA L  L +GK  H +V  C    ++ ++
Sbjct: 168 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ 227

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
            AL  +YA   +M                                +A++ FD MP+R  +
Sbjct: 228 AALIALYAKASDM-------------------------------KVAKKVFDAMPQRTII 256

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W ++I GY +    +E++ LF  M  S  +PD  TIVS+L++C+ LGAL+ G W+  Y 
Sbjct: 257 AWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYA 316

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           D N    ++ +G +LI+MY +CG+V KA+ VF  M  ++  TWTAMI G  ++G+G +++
Sbjct: 317 DGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAM 376

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++F++M      P+ +T+V VLSAC H+G++D+GR  F+ M   +G+ P   H  CMVD+
Sbjct: 377 ELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDM 436

Query: 495 LGRAGHLNEALEVIKN-MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
            GRAG LN+A + IK  +P +P   VW ++LGACR+HR+ ++    A+ +L ++P+N   
Sbjct: 437 FGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGH 496

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           YV+L NIYA   R D    +R M+  R +KK  G S IE+N   + F  GDKSHPQT  I
Sbjct: 497 YVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTI 556

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
           Y  LDE+       GY+P    +  D+ EE+++ A+  HSEKLA+AFGL+ +  G TIRI
Sbjct: 557 YRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRI 616

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           VKNLR+C DCH   K +S++ DRE+IVRDK RFHHFK GSCSC DYW
Sbjct: 617 VKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 230/460 (50%), Gaps = 50/460 (10%)

Query: 10  PSTLTQETPLISPIE-----TCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           P T   +T   SP+      +   +  L+Q+H+  I  GL  + ++  KL++  C+  G 
Sbjct: 80  PVTRNFDTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCT-AGS 138

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + YA ++F  +P P   L+++++K  S+     + VL Y  ML S     NYTF  ++K 
Sbjct: 139 ITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKA 198

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
                A+  GKE+H HV+  G+ S ++VQ ALI+ Y    ++ +A+ +FD   +  ++ W
Sbjct: 199 CADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAW 258

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N++ SGY +     E+  LF  M   G  P S TIV +LS+C++L  LD G   H Y   
Sbjct: 259 NSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADG 318

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                N++L  +L +MY  CG +  A E+F ++K ++V++WTA+++GY            
Sbjct: 319 NGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGY------------ 366

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                          + GY      R+A+ LF EM+    RP+  T V++L+ACA+ G +
Sbjct: 367 --------------GMHGY-----GRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLI 407

Query: 365 ELGEWV-----KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD--KFTW 417
           + G  V     + Y     V++++     ++DM+ + G +  A +  ++ + K+     W
Sbjct: 408 DDGRRVFSSMKEAYGLVPGVEHNV----CMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVW 463

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
           T+M+    ++ + D  + +   +L  S+ P+   +  +LS
Sbjct: 464 TSMLGACRMHRNFDLGVKVAEHVL--SVEPENPGHYVMLS 501


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/426 (48%), Positives = 292/426 (68%), Gaps = 1/426 (0%)

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G+ D A   F +MP RD V W +M+  Y +  +  EAL LF +M+   ++P E T+VS+L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
           +ACA+LGAL+ G  + TYI+ N+++ +  VG AL+DMY KCG +  A +VF  M  KD  
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
            W  +I G+AI+GH  ++  +F +M  A + P+++T+V +LSAC+H GMVDEG++    M
Sbjct: 282 AWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 341

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535
           +  +GIEP   HYGC++DLL RAG L EA+E+I  MPM+PN    GALLG CR+H + E+
Sbjct: 342 SSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFEL 401

Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
            EM  K+++ L P +   Y+LL NIYAA  +WD+ R++R ++   GI K PG S+IE+ G
Sbjct: 402 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 461

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMTSDLK-FVGYMPDISEVFLDVGEEDKERAVYQHSE 654
           +VH FVAGD SHP++ +IY KL+E+ + LK  +G+  D  +V LD+ EEDKE A+  HSE
Sbjct: 462 MVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSE 521

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           KLA+A+GL+       IRIVKNLR+C DCH + KL+S VY RE+IVRD+ RFHHF+ G C
Sbjct: 522 KLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGEC 581

Query: 715 SCKDYW 720
           SC D+W
Sbjct: 582 SCLDFW 587



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 137/271 (50%), Gaps = 41/271 (15%)

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G+ D A G+F      DVV+WN+M + Y +  + +E   LF +M   GV PT  T+V +L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
           SACA L  LD G   H Y+ + +I  N I+  AL DMYA CG++  A ++F  +++KDV+
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           +W  I+ G    G V                               +EA  LF+EM+ + 
Sbjct: 282 AWNTIIAGMAIHGHV-------------------------------KEAQRLFKEMKEAG 310

Query: 344 IRPDEFTIVSILTACANLGALELGEWV-----KTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           + P++ T V++L+AC++ G ++ G+ +      +Y  + KV++       +ID+  + G 
Sbjct: 311 VEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY----GCVIDLLARAGL 366

Query: 399 VEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
           +E+A  +   M +  +     A++ G  I+G
Sbjct: 367 LEEAMELIGTMPMEPNPCALGALLGGCRIHG 397



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 1/211 (0%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A  +F ++P   V  WN+M+  Y++       + ++  M    V+P   T   LL     
Sbjct: 167 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 226

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             A++ G  LH ++     + +  V  AL+  Y  CG++ +A  +F+     DV+ WN +
Sbjct: 227 LGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTI 286

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-K 246
            +G        E ++LF EM+  GV P  +T V +LSAC+    +D G++    +     
Sbjct: 287 IAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYG 346

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNI 277
           I P +     + D+ A  G +  A+E+ G +
Sbjct: 347 IEPKVEHYGCVIDLLARAGLLEEAMELIGTM 377


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/709 (35%), Positives = 371/709 (52%), Gaps = 42/709 (5%)

Query: 21  SPIETC-ESM---HQLKQIHSQTIKLGLL-TNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           S I  C ESM    + +Q+H   I+ GL      V N L+    ++ GD+ +A  VF  +
Sbjct: 106 SAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMY-AKCGDIDHARSVFGLM 164

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
                  WN+MI G  +    ++ V  Y  M K+ + P N+     L        +  G+
Sbjct: 165 VDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQ 224

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV- 194
           + H   +K G D  V V N L++ Y     +   + +F    + D V+WN +        
Sbjct: 225 QTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSG 284

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
               E  ++F EM R G  P  VT + +L+  + L    +  + H  + +  +  +  +E
Sbjct: 285 ASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIE 344

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER-DY 313
           NAL   Y   GEM    EI                               F +M ER D 
Sbjct: 345 NALLACYGKSGEMENCEEI-------------------------------FSRMSERRDE 373

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           V W +MI GY+      +A+ L   M     R D FT  ++L+ACA +  LE G  V   
Sbjct: 374 VSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHAC 433

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
             +  +++D+ +G+AL+DMY KCG ++ A R F  M  ++ ++W +MI G A +GHGD +
Sbjct: 434 AIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNA 493

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           L +F++M  +  +PD +T+VGVLSAC+H G+VDEG EYF  MT  +G+ P   HY CMVD
Sbjct: 494 LRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVD 553

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC--RVHRDAEMAEMAAKQILELDPDNE 551
           LLGRAG L++    I  MP+KPN ++W  +LGAC     R  E+   AA+ +  +DP N 
Sbjct: 554 LLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNA 613

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL N+YA+  +W++    R+ + +  +KK  GCS + M   VH FVAGD SHP+  
Sbjct: 614 VNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKG 673

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            IY KL E+   ++  GY+P I     D+  E+KE  +  HSEKLA+AF +++   G+ I
Sbjct: 674 LIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAF-VLTRNSGLPI 732

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI+KNLR+C DCH   K +S V DR +++RD  RFHHF+ G CSC+DYW
Sbjct: 733 RIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/505 (23%), Positives = 230/505 (45%), Gaps = 36/505 (7%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
            H   +K G  ++  + N L+       GD   A K+F ++P  +   W  +I GY++  
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYV-RIGDCVSARKLFDEMPDRNGVTWACLISGYTQNG 80

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF-GKELHCHVLKFGF-DSSVFV 152
             ++   +  +M+     P+ + F   ++     +     G+++H + ++ G  D+ V V
Sbjct: 81  MPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAV 140

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            N LI+ Y  CG++D AR +F +    D V+WN+M +G  + K F++  K +  M + G+
Sbjct: 141 GNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGL 200

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
           +P++  ++  LS+CA L  + +G++ H    +  +  ++ + N L  +YA    +    +
Sbjct: 201 MPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQK 260

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  +  +D +SW  ++    + G                                  EA
Sbjct: 261 VFSWMLERDQVSWNTVIGALADSGA------------------------------SVSEA 290

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           + +F EM  +   P+  T +++L   ++L   +L   +   I K  VK+D  + NAL+  
Sbjct: 291 IEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLAC 350

Query: 393 YCKCGDVEKAQRVFREML-RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           Y K G++E  + +F  M  R+D+ +W +MI G   N    K++D+   M++     D  T
Sbjct: 351 YGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFT 410

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +  VLSAC     ++ G E  A   I+  +E +      +VD+  + G ++ A      M
Sbjct: 411 FATVLSACATVATLECGMEVHA-CAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLM 469

Query: 512 PMKPNSIVWGALLGACRVHRDAEMA 536
           P++ N   W +++     H   + A
Sbjct: 470 PVR-NLYSWNSMISGYARHGHGDNA 493



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 198/437 (45%), Gaps = 38/437 (8%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCC 59
           S +S+     +     LIS + +C S+  +   +Q H + IKLGL  + +V N L+    
Sbjct: 191 SYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLAL-Y 249

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID-SHKNGVLIYLDMLKSDVRPDNYTF 118
           +E   +    KVF  +       WNT+I   +    S    + ++L+M+++   P+  TF
Sbjct: 250 AETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTF 309

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSY 177
             LL   +     +   ++H  +LK+       ++NAL++ Y   GE++    IF  +S 
Sbjct: 310 INLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSE 369

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           + D V+WN+M SGY   +   +   L   M ++G      T   VLSACA +  L+ G  
Sbjct: 370 RRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGME 429

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H       +  ++++ +AL DMY+ CG + +A   F  +  +++ SW ++++GY   G 
Sbjct: 430 VHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGH 489

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
            D                                AL LF  M+ S   PD  T V +L+A
Sbjct: 490 GD-------------------------------NALRLFTRMKLSGQLPDHITFVGVLSA 518

Query: 358 CANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
           C+++G ++ G E+ K+  +   +   +   + ++D+  + G+++K +    +M  K    
Sbjct: 519 CSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNIL 578

Query: 417 WTAMIVGLAINGHGDKS 433
               ++G    G+G K+
Sbjct: 579 IWRTVLGACCRGNGRKT 595


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/587 (37%), Positives = 335/587 (57%), Gaps = 32/587 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           +++H H++  G   S  +   LIS  C  G +  AR +F      D   ++++     + 
Sbjct: 44  QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 103

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
               +T   +  M   G   ++ T   V+ ACA L  L +GK  H +V  C    ++ ++
Sbjct: 104 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ 163

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
            AL  +YA   +M                                +A++ FD MP+R  +
Sbjct: 164 AALIALYAKASDM-------------------------------KVAKKVFDAMPQRTII 192

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W ++I GY +    +E++ LF  M  S  +PD  TIVS+L++C+ LGAL+ G W+  Y 
Sbjct: 193 AWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYA 252

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
           D N    ++ +G +LI+MY +CG+V KA+ VF  M  ++  TWTAMI G  ++G+G +++
Sbjct: 253 DGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAM 312

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++F++M      P+ +T+V VLSAC H+G++D+GR  F+ M   +G+ P   H  CMVD+
Sbjct: 313 ELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDM 372

Query: 495 LGRAGHLNEALEVIKN-MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
            GRAG LN+A + IK  +P +P   VW ++LGACR+HR+ ++    A+ +L ++P+N   
Sbjct: 373 FGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGH 432

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           YV+L NIYA   R D    +R M+  R +KK  G S IE+N   + F  GDKSHPQT  I
Sbjct: 433 YVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTI 492

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
           Y  LDE+       GY+P    +  D+ EE+++ A+  HSEKLA+AFGL+ +  G TIRI
Sbjct: 493 YRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRI 552

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           VKNLR+C DCH   K +S++ DRE+IVRDK RFHHFK GSCSC DYW
Sbjct: 553 VKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 230/460 (50%), Gaps = 50/460 (10%)

Query: 10  PSTLTQETPLISPIE-----TCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           P T   +T   SP+      +   +  L+Q+H+  I  GL  + ++  KL++  C+  G 
Sbjct: 16  PVTRNFDTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCT-AGS 74

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           + YA ++F  +P P   L+++++K  S+     + VL Y  ML S     NYTF  ++K 
Sbjct: 75  ITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKA 134

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
                A+  GKE+H HV+  G+ S ++VQ ALI+ Y    ++ +A+ +FD   +  ++ W
Sbjct: 135 CADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAW 194

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N++ SGY +     E+  LF  M   G  P S TIV +LS+C++L  LD G   H Y   
Sbjct: 195 NSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADG 254

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                N++L  +L +MY  CG +  A E+F ++K ++V++WTA+++GY            
Sbjct: 255 NGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGY------------ 302

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
                          + GY      R+A+ LF EM+    RP+  T V++L+ACA+ G +
Sbjct: 303 --------------GMHGY-----GRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLI 343

Query: 365 ELGEWV-----KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD--KFTW 417
           + G  V     + Y     V++++     ++DM+ + G +  A +  ++ + K+     W
Sbjct: 344 DDGRRVFSSMKEAYGLVPGVEHNV----CMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVW 399

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
           T+M+    ++ + D  + +   +L  S+ P+   +  +LS
Sbjct: 400 TSMLGACRMHRNFDLGVKVAEHVL--SVEPENPGHYVMLS 437


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/687 (35%), Positives = 361/687 (52%), Gaps = 83/687 (12%)

Query: 40  IKLGLLTNPTVQNKLVTFC-----CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           ++   LT P+ Q+++         C   GD+  A +VF  +   +   WN+++ G S+  
Sbjct: 47  VRSDYLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDP 106

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
           S         D +     PD +++  +L  + R++  E                      
Sbjct: 107 SRMMEAHQLFDEIPE---PDTFSYNIMLSCYVRNVNFE---------------------- 141

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
                         A+  FD     D  +WN M +GY R  + ++ R+LF  M  K    
Sbjct: 142 -------------KAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEK---- 184

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
                                              N +  NA+   Y  CG++  A   F
Sbjct: 185 -----------------------------------NEVSWNAMISGYIECGDLEKASHFF 209

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP-ERDYVLWTAMIDGYLRVNRFREAL 333
                + V++WTA++TGY+   +V++A   F  M   ++ V W AMI GY+  +R  + L
Sbjct: 210 KVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGL 269

Query: 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393
            LFR M    IRP+   + S L  C+ L AL+LG  +   + K+ + ND+    +LI MY
Sbjct: 270 KLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMY 329

Query: 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453
           CKCG++  A ++F  M +KD   W AMI G A +G+ DK+L +F +M+   I PD +T+V
Sbjct: 330 CKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFV 389

Query: 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM 513
            VL AC H G+V+ G  YF  M   + +EP   HY CMVDLLGRAG L EAL++I++MP 
Sbjct: 390 AVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPF 449

Query: 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573
           +P++ V+G LLGACRVH++ E+AE AA+++L+L+  N A YV L NIYA+ NRW++   +
Sbjct: 450 RPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARV 509

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R+ + +  + K PG S IE+   VH F + D+ HP+   I+ KL E+   +K  GY P++
Sbjct: 510 RKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPEL 569

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
                +V EE KE+ +  HSEKLA+AFG I    G  I++ KNLR+C DCH+  K +S +
Sbjct: 570 EFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEI 629

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
             RE+IVRD TRFHHFK GSCSC DYW
Sbjct: 630 EKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 184/440 (41%), Gaps = 81/440 (18%)

Query: 7   ISPPSTLTQETPLISPIETC----ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
           ++ PS   Q  PL   I  C    +    L+  H    K     N    N L+     + 
Sbjct: 52  LTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAK-----NTITWNSLLIGISKDP 106

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
             M  A ++F +IP P    +N M+  Y R  + +     +  M   D    N     ++
Sbjct: 107 SRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNT----MI 162

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
            G+ R   +E  +EL   ++    + +    NA+IS Y  CG+++ A   F V+    VV
Sbjct: 163 TGYARRGEMEKARELFYSMM----EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVV 218

Query: 183 TWNAMFSGYKRVKQF--------------------------------DETRKLFGEMERK 210
            W AM +GY + K+                                 ++  KLF  M  +
Sbjct: 219 AWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEE 278

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G+ P S  +   L  C++L  L +G++ H+ V +  +  ++    +L  MY  CGE+G A
Sbjct: 279 GIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDA 338

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            ++F  +K KDV++W A+++GY   G  D                               
Sbjct: 339 WKLFEVMKKKDVVAWNAMISGYAQHGNAD------------------------------- 367

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNAL 389
           +AL LFREM  + IRPD  T V++L AC + G + +G  + ++ +   KV+        +
Sbjct: 368 KALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCM 427

Query: 390 IDMYCKCGDVEKAQRVFREM 409
           +D+  + G +E+A ++ R M
Sbjct: 428 VDLLGRAGKLEEALKLIRSM 447


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/720 (34%), Positives = 395/720 (54%), Gaps = 45/720 (6%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTI---KLGLLTNPTVQNKLVTFCCSEKGDMK 66
           P +L +   L+    T +S+   K IH+Q +   +    ++ T  N L+    S+ G  K
Sbjct: 20  PCSLKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLY-SKCGQSK 78

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR-----PDNYTFPFL 121
            A K+F ++ + +V  W+ ++ GY     HK  VL  L + ++ V      P+ Y F  +
Sbjct: 79  CARKLFDRMLQRNVVSWSALMMGYL----HKGEVLEVLGLFRNLVSLDSAYPNEYIFTIV 134

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L        V+ GK+ H ++LK G     +V+NALI  Y  C  VD A  I D    DDV
Sbjct: 135 LSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDV 194

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
            ++N++ S         E  ++   M  + V+  SVT V VL  CA+++DL +G + H  
Sbjct: 195 FSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQ 254

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           + +  +V ++ + + L D Y  CGE+  A + F  +++++V++WTA++T Y+  G     
Sbjct: 255 LLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGH---- 310

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                      F E L LF +M+  + RP+EFT   +L ACA+L
Sbjct: 311 ---------------------------FEETLNLFTKMELEDTRPNEFTFAVLLNACASL 343

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            AL  G+ +   I  +  KN + VGNALI+MY K G+++ +  VF  M+ +D  TW AMI
Sbjct: 344 VALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMI 403

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G + +G G ++L +F  M+ A   P+ VT++GVLSAC H  +V EG  YF  +  +  +
Sbjct: 404 CGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDV 463

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMP-MKPNSIVWGALLGACRVHRDAEMAEMAA 540
           EP   HY CMV LLGRAG L+EA   +K    +K + + W  LL AC +HR+  + +   
Sbjct: 464 EPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQIT 523

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
           + ++++DP +   Y LL N++A   +WD   ++R+++ +R IKK PG S +++    H F
Sbjct: 524 ETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVF 583

Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
           V+   +HP++ +I+ K+ ++ + +K +GY PD+  V  DV +E KE  +  HSEKLA+A+
Sbjct: 584 VSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAY 643

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           GL+   P   IRI+KNLRMC DCH   KL+S   +R +IVRD  RFHHF+ G C+C D+W
Sbjct: 644 GLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/564 (37%), Positives = 347/564 (61%), Gaps = 6/564 (1%)

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y   G++  +  +F  +   D+  + A  +        D+   L+ ++    + P   T
Sbjct: 71  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFT 130

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
              +L +C+       GK  H +V +  +  +  +   L D+YA  G++  A ++F  + 
Sbjct: 131 FSSILKSCST----KSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMP 186

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
            + ++S TA++T Y  +G V+ AR  FD+M ERD V W  MIDGY +     +AL LF++
Sbjct: 187 ERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQK 246

Query: 339 M-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
           +      +PDE T+V+ L+AC+ +GALE G W+  +++ ++++ ++ V  ALIDMY KCG
Sbjct: 247 LLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCG 306

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVL 456
            +E+A  VF +  RKD   W AMI G A++G+   +L +F +M   + + P ++T++G L
Sbjct: 307 SLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTL 366

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
            AC H G+V+EG + F  M  ++GI+P   HYGC+V LLGRAG L  A E+IKNM M+ +
Sbjct: 367 QACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEAD 426

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           S++W ++LG+C++H +  + +  A+ ++  +  N  +YVLL NIYA    ++   ++R +
Sbjct: 427 SVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNL 486

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + ++GI K PG S IE++  VHEF AGD+ H ++KEIY  L +M+  +K  GY+P+ + V
Sbjct: 487 MKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTV 546

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             D+ E +KER++  HSE+LA+A+GLIS+ PG  ++I KNLR+C DCH + KL+S +  R
Sbjct: 547 LHDLEETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGR 606

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           ++++RD+ RFHHF  GSCSC D+W
Sbjct: 607 KIVMRDRNRFHHFSDGSCSCDDFW 630



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 201/443 (45%), Gaps = 72/443 (16%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNP--TVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           I+   S+ ++ QIH+  ++  LL +P   V N  +    +  G ++++  +F +   P +
Sbjct: 34  IDNSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDL 93

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            L+   I   S         L+Y+ +L S + P+ +TF  +LK      + + GK +H H
Sbjct: 94  FLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILK----SCSTKSGKLIHTH 149

Query: 141 VLKFGF-------------------------------DSSVFVQNALISTYCLCGEVDMA 169
           VLKFG                                + S+    A+I+ Y   G V+ A
Sbjct: 150 VLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAA 209

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAK 228
           R +FD   + D+V+WN M  GY +     +   LF ++   G   P  +T+V  LSAC++
Sbjct: 210 RALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQ 269

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           +  L+ G+  H +V   +I  N+ +  AL DMY+ CG +  A+ +F +   KD+++W A+
Sbjct: 270 IGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAM 329

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPD 347
           +TGY                           + GY      ++AL LF EMQ  + ++P 
Sbjct: 330 ITGY--------------------------AMHGY-----SQDALRLFDEMQGITGLQPT 358

Query: 348 EFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           + T +  L ACA+ G +  G +  ++   +  +K  I     L+ +  + G +++A  + 
Sbjct: 359 DITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEII 418

Query: 407 REM-LRKDKFTWTAMIVGLAING 428
           + M +  D   W++++    ++G
Sbjct: 419 KNMNMEADSVLWSSVLGSCKLHG 441


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/588 (39%), Positives = 339/588 (57%), Gaps = 33/588 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K++H  VL+ GF     +   L+    + G++  AR +FD  +K  +  WN +F GY R 
Sbjct: 28  KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRN 87

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
           +   E+  L+ +M   GV P   T   V+ A ++L D   G   H +V            
Sbjct: 88  QLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHV------------ 135

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
                       + +     G       I  T +V  Y+  G++  A   F+ M  +D V
Sbjct: 136 ------------VKYGFGCLG-------IVATELVMMYMKFGELSSAEFLFESMQVKDLV 176

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W A +   ++      AL  F +M    ++ D FT+VS+L+AC  LG+LE+GE +    
Sbjct: 177 AWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRA 236

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K ++  +I V NA +DM+ KCG+ E A+ +F EM +++  +W+ MIVG A+NG   ++L
Sbjct: 237 RKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREAL 296

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH--GIEPNEAHYGCMV 492
            +F+ M    + P+ VT++GVLSAC+H G+V+EG+ YF+ M   +   +EP + HY CMV
Sbjct: 297 TLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMV 356

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGR+G L EA E IK MP++P++ +WGALLGAC VHRD  + +  A  ++E  PD  +
Sbjct: 357 DLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGS 416

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            +VLL NIYAA  +WD   ++R  +   G KK    S +E  G +H F  GDKSHPQ+K 
Sbjct: 417 YHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKA 476

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY KLDE+   ++ +GY+PD   VF DV  E+KE ++  HSEKLA+AFGLI   PG  IR
Sbjct: 477 IYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIR 536

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++KNLR C DCH  +K VS +   E+I+RDK RFHHF++G CSCK++W
Sbjct: 537 VMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 146/557 (26%), Positives = 244/557 (43%), Gaps = 82/557 (14%)

Query: 13  LTQETPLISPI------ETCESMHQLKQIHSQTIKLGL-----LTNPTVQNKLVTFCCSE 61
           L ++TPL   +       +     QLK+IH+  ++ G      L    ++N +V      
Sbjct: 2   LAKQTPLTKQMLSELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVI----- 56

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
            GDM YA +VF ++ +P + LWNT+ KGY R       +L+Y  M    VRPD +T+PF+
Sbjct: 57  -GDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFV 115

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           +K  ++      G  LH HV+K+GF     V   L+  Y   GE+  A  +F+     D+
Sbjct: 116 VKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDL 175

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           V WNA  +   +        + F +M    V   S T+V +LSAC +L  L++G+  +  
Sbjct: 176 VAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDR 235

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
            ++ +I  N+I+ENA  DM+  CG    A  +F  +K ++V+SW+ ++ GY   G     
Sbjct: 236 ARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDS--- 292

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                       REALTLF  MQ   +RP+  T + +L+AC++ 
Sbjct: 293 ----------------------------REALTLFTTMQNEGLRPNYVTFLGVLSACSHA 324

Query: 362 GALELGEWVKTYI----DKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKF 415
           G +  G+   + +    DKN + + + +    ++D+  + G +E+A    ++M +  D  
Sbjct: 325 GLVNEGKRYFSLMVQSNDKNLEPRKEHYA--CMVDLLGRSGLLEEAYEFIKKMPVEPDTG 382

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS----ACTHTGMVDEGREY 471
            W A++   A+  H D  L      +     PD  +Y  +LS    A      VD+ R  
Sbjct: 383 IWGALLGACAV--HRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSK 440

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAG-----------HLNEALEVIKNMPMKPNSIVW 520
              +  +     +   +   +    R              L+E L+ I+ M   P++   
Sbjct: 441 MRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDT--- 497

Query: 521 GALLGACRVHRDAEMAE 537
                 C V  D EM E
Sbjct: 498 ------CSVFHDVEMEE 508


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/588 (39%), Positives = 333/588 (56%), Gaps = 38/588 (6%)

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM--ARGIFDVSYKDDVVTWNAMFSGYKR 193
           +LH  +LK G  +       L+ +        +  AR IFD+    D   +N +   +  
Sbjct: 6   KLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHAD 65

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                       +M   GV P   T   VL ACA+L+    G   H  + +     ++ +
Sbjct: 66  SSPSFSLSLF-SKMTMAGVSPDHFTFPFVLKACARLQ---TGLDLHSLLFKLGFDSDVYV 121

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
           +N L   Y  CG + FAL                               + F++MPERD 
Sbjct: 122 QNGLIHFYGCCGFLDFAL-------------------------------KAFEEMPERDL 150

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTACANLGALELGEWVKT 372
           V W++MI  + +     EAL LF+ MQ    ++PDE  ++S+++A + LG LELG+W++ 
Sbjct: 151 VSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRG 210

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
           +I +N ++  + +G AL+DM+ +CG +E++ RVF EM  ++  TWTA+I GLA++G   +
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAE 270

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +L MF +M      PD VT+ GVL AC+H G+V EG   F  +  ++G+EP   HYGCMV
Sbjct: 271 ALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMV 330

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGRAG LNEA + +  MP++PNSI+W  LLGAC  H   E+AE   ++I ELD  ++ 
Sbjct: 331 DLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDG 390

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVLL N+Y    RW     +R  + ++ I K PGCS+I +N ++HEFVAGD +HPQ + 
Sbjct: 391 DYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFES 450

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I   L  M   LK VGY PDIS V  D+ EE+KE  +  HSEKLA+AF L+      TIR
Sbjct: 451 IREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIR 510

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++KNLR+C DCH   K  S V++RE+I+RD+ RFHHF  GSCSC+DYW
Sbjct: 511 VMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 193/404 (47%), Gaps = 42/404 (10%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           M+ + ++H++ +K G   +P    +L+  C  S    + YA  +F  I  P    +NT+I
Sbjct: 1   MNHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTII 60

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
           + ++        + ++  M  + V PD++TFPF+LK   R   ++ G +LH  + K GFD
Sbjct: 61  RAHADSSP-SFSLSLFSKMTMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFD 116

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           S V+VQN LI  Y  CG +D A   F+   + D+V+W++M + + +     E   LF  M
Sbjct: 117 SDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRM 176

Query: 208 ERKG-VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           +  G V P  V ++ V+SA + L DL++GK    ++    +   + L  AL DM++ CG 
Sbjct: 177 QLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGC 236

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +  ++ +F  +  ++V++WTA++ G    G                              
Sbjct: 237 IEESMRVFDEMGERNVLTWTALINGLAVHG------------------------------ 266

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
            R  EAL +F EM+    +PD  T   +L AC++ G +  G  V   I +N+   +    
Sbjct: 267 -RSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESI-RNEYGMEPLPE 324

Query: 387 N--ALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
           +   ++D+  + G + +A +    M +R +   W  ++ G  +N
Sbjct: 325 HYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLL-GACVN 367



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 145/333 (43%), Gaps = 17/333 (5%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF--CCSEKGDMKYACKVFRKIPRPSV 80
           ++ C  +     +HS   KLG  ++  VQN L+ F  CC   G + +A K F ++P   +
Sbjct: 94  LKACARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCC---GFLDFALKAFEEMPERDL 150

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDM-LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
             W++MI  +++       + ++  M L   V+PD      ++   +    +E GK +  
Sbjct: 151 VSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRG 210

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            + + G + +V +  AL+  +  CG ++ +  +FD   + +V+TW A+ +G     +  E
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAE 270

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALT 258
             ++F EM   G  P  VT   VL AC+    +  G      ++ E  + P       + 
Sbjct: 271 ALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMV 330

Query: 259 DMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQY------FDQMPER 311
           D+    G +  A +    +  + + I W  ++   +N   +++A +        D   + 
Sbjct: 331 DLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDG 390

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           DYVL + +  G   V R+ E   +   M+   I
Sbjct: 391 DYVLLSNVYGG---VGRWAEKAGVRNSMREKRI 420


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/617 (37%), Positives = 349/617 (56%), Gaps = 44/617 (7%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           +  C ++  + QIH+Q +K  L  +  V  KL+    S    +  A  VF  +P P+V L
Sbjct: 28  LHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIA-AFSLCRHLASAVNVFNHVPHPNVHL 86

Query: 83  WNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           +N++I+ ++   SH +     +  M K+ + PDN+T+PFLLK  T   ++   + +H HV
Sbjct: 87  YNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHV 146

Query: 142 LKFGFDSSVFVQNALISTYCLCGE--VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            KFGF   +FV N+LI +Y  CG   +D A  +F    + DVVTWN+M  G  R  + + 
Sbjct: 147 EKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEG 206

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             KLF EM  +                                       +++  N + D
Sbjct: 207 ACKLFDEMPER---------------------------------------DMVSWNTMLD 227

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
            YA  GEM  A E+F  +  ++++SW+ +V GY   G +DMAR  FD+ P ++ VLWT +
Sbjct: 228 GYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTI 287

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I GY      REA  L+ +M+ + +RPD+  ++SIL ACA  G L LG+ +   + + + 
Sbjct: 288 IAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRF 347

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +    V NA IDMY KCG ++ A  VF  M+ +KD  +W +MI G A++GHG+K+L++FS
Sbjct: 348 RCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFS 407

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M+     PD  T+VG+L ACTH G+V+EGR+YF  M   +GI P   HYGCM+DLLGR 
Sbjct: 408 RMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRG 467

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           GHL EA  ++++MPM+PN+I+ G LL ACR+H D + A    +Q+ +++P +   Y LL 
Sbjct: 468 GHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLS 527

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           NIYA    W N   +R  +++ G +K  G S IE+   VHEF   D+SHP++ +IY  +D
Sbjct: 528 NIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYKMID 587

Query: 619 EMTSDLKFVGYMPDISE 635
            +  DL+ VGY+P I +
Sbjct: 588 RLVQDLRQVGYVPMIHQ 604


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/633 (36%), Positives = 358/633 (56%), Gaps = 41/633 (6%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P     E   I+ + +C++  +L QI +Q +  GL  N  V    +T  CS    + +A 
Sbjct: 6   PVQRIVEEKFITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFIT-TCSRFKRIHHAR 64

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           K+F KIP+P+   WN M +GY +   H++ V+++ ++ +    P+ +TFP ++K   +  
Sbjct: 65  KLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLE 124

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            V  G+E+HC   K GF S+ FV  +LI  Y   G V+ A  +F   ++ +VV W A+ +
Sbjct: 125 GVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIIN 184

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY         R+LF     + V+  SV                                
Sbjct: 185 GYILCGDVVSGRRLFDLAPERDVVMWSV-------------------------------- 212

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
                  L   Y     M  A E+F  + N+D +SW A++ GY   G+V+M  + FD+MP
Sbjct: 213 -------LISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMP 265

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGE 368
           ER+   W  +I GY++   F E L  F+ M    ++ P++FT+V++L+AC+ LGAL++G+
Sbjct: 266 ERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGK 325

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
           WV  Y +    K ++FVGN LIDMY KCG +E A  VF  + RKD  +W  +I GLAI+G
Sbjct: 326 WVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHG 385

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
           H   +L MF +M      PD VT+VG+LSACTH G+V +G  YF  M   + I P   HY
Sbjct: 386 HAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHY 445

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
           GCMVDLLGRAG L++AL  I+ MP++P++++W ALLGACR++++ E+AE+A ++++EL+P
Sbjct: 446 GCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEP 505

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
           +N A +V++ NIY    R ++   L+  + D G +K PGCS+IE N  V EF + D+ H 
Sbjct: 506 NNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLDERHS 565

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
           +T+ IY  L  +T  L+  GY+P++S+V   +G
Sbjct: 566 ETESIYRVLKGLTMLLRSHGYVPNLSDVAHGLG 598


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/765 (32%), Positives = 402/765 (52%), Gaps = 87/765 (11%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H Q++K G L + +V   LV      + D +    +F ++   +V  W +++ GY+R
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTE-DFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              +   + +   M    V P+ +TF  +L     +  +E G ++H  ++K GF+ + FV
Sbjct: 183 NGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NALI  Y     V  A  +FD     D VTWN M  GY  +  + E  ++F  M   GV
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI-----LENALTDMYAACGEM 267
             +       L  C++ ++L+  K+ H     C +V N       +  AL   Y+ C  +
Sbjct: 303 KLSRTVFCTALKLCSQQRELNFTKQLH-----CGVVKNGYEFAQDIRTALMVTYSKCSSV 357

Query: 268 GFALEIFGNI-KNKDVISWTAIVTGYI----NRGQVD----MARQ--------------- 303
             A ++F       +V++WTA++ G++    N+  VD    M+R+               
Sbjct: 358 DEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAG 417

Query: 304 ----------------YFDQMPERDYVLWTAMIDGYLRVNRFRE---------------- 331
                           Y++++P     + TA++D Y++     E                
Sbjct: 418 KPSSLLSQLHAQIIKAYYEKVPS----VATALLDAYVKTGNVVESARVFYSIPAKDIVAW 473

Query: 332 ---------------ALTLFREMQTSNIRPDEFTIVSILTACANLGA-LELGEWVKTYID 375
                          A+ +F ++    ++P+E+T  S++ AC++  A +E G+ +     
Sbjct: 474 SAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAV 533

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
           K+   N + V +AL+ MY K G++E A++VF     +D  +W +MI G   +G   K+L+
Sbjct: 534 KSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALE 593

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +F  M    +  D+VT++GVL+ACTH G+V+EG +YF  M   + I+    HY CMVDL 
Sbjct: 594 VFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLY 653

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
            RAG  ++A+++I  MP   +  +W  LL ACRVHR+ E+ ++AA++++ L P++   YV
Sbjct: 654 SRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYV 713

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYL 615
           LL NI+A    W+    +R+++ +R +KK  GCS IE+   +  F+AGD SHP +  +Y 
Sbjct: 714 LLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYA 773

Query: 616 KLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVK 675
           KL+E++  LK +GY PD + VF DV EE KE  + QHSE+LA+A+GLI+  PG  I+I K
Sbjct: 774 KLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEK 833

Query: 676 NLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           NLR+C DCH + +L+S++ +R +IVRD  RFHHFK G CSC  YW
Sbjct: 834 NLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 132/561 (23%), Positives = 240/561 (42%), Gaps = 88/561 (15%)

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK-- 123
           +YA ++F + P   +  +N ++  +SR +  +  + ++ D+  S +  D  T    LK  
Sbjct: 55  RYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
           G   D  V  G+++HC  LK GF   V V  +L+  Y    + +  RGIFD     +VV+
Sbjct: 115 GVLFDQVV--GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVS 172

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           W ++ SGY R    DE   L  +M+ +GV P   T   VL A A    ++ G + H  + 
Sbjct: 173 WTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIV 232

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG------- 296
           +        + NAL  MY     +G A  +F ++  +D ++W  ++ GY   G       
Sbjct: 233 KNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQ 292

Query: 297 --------QVDMARQYF-------DQMPERDYV-----------------LWTAMIDGYL 324
                    V ++R  F        Q  E ++                  + TA++  Y 
Sbjct: 293 MFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYS 352

Query: 325 RVNRFREALTLFR--------------------------------EMQTSNIRPDEFTIV 352
           + +   EA  LF                                 +M    +RP+ FT  
Sbjct: 353 KCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYS 412

Query: 353 SILTA-CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           ++L    ++L +    + +K Y +K        V  AL+D Y K G+V ++ RVF  +  
Sbjct: 413 TVLAGKPSSLLSQLHAQIIKAYYEKVPS-----VATALLDAYVKTGNVVESARVFYSIPA 467

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT-GMVDEGRE 470
           KD   W+AM+ GLA     +K++++F Q+++  + P+E T+  V++AC+ +   V+ G++
Sbjct: 468 KDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQ 527

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
             A   ++ G          ++ +  + G++  A +V      + + + W +++     H
Sbjct: 528 IHA-TAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEER-DIVSWNSMITGYGQH 585

Query: 531 RDA----EMAEMAAKQILELD 547
            DA    E+ ++   Q L LD
Sbjct: 586 GDAKKALEVFQIMQNQGLPLD 606



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 127/248 (51%), Gaps = 3/248 (1%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           L Q+H+Q IK      P+V   L+     + G++  + +VF  IP   +  W+ M+ G +
Sbjct: 423 LSQLHAQIIKAYYEKVPSVATALLD-AYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLA 481

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-VEFGKELHCHVLKFGFDSSV 150
           +    +  + +++ ++K  V+P+ YTF  ++   +   A VE GK++H   +K G  +++
Sbjct: 482 QTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNAL 541

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            V +AL++ Y   G ++ A  +F    + D+V+WN+M +GY +     +  ++F  M+ +
Sbjct: 542 CVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQ 601

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHR-YVKECKIVPNLILENALTDMYAACGEMGF 269
           G+    VT + VL+AC     ++ G++     +K+  I       + + D+Y+  G    
Sbjct: 602 GLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDK 661

Query: 270 ALEIFGNI 277
           A++I   +
Sbjct: 662 AMDIINGM 669


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/726 (33%), Positives = 397/726 (54%), Gaps = 44/726 (6%)

Query: 1   MFSN--SSISPPSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLV 55
           MFS   S    P ++T    ++S  E C  +  L+    +H   ++  + +N ++ N L+
Sbjct: 188 MFSQMISEAVEPDSVT----MLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLI 243

Query: 56  TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN 115
                + GD+  A ++F  +P      W  MI  Y++    +  + ++  M +  + P+ 
Sbjct: 244 VMY-GKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQ 302

Query: 116 YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV-FVQNALISTYCLCGEVDMARGIFD 174
            T   +L    R   V+ G+ +H  V++   D  + F+  AL+  Y   G +     +F+
Sbjct: 303 VTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFE 362

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
              +  +++WN + S + R  Q +E   LF +M+ +G++P S ++   LSAC  +    +
Sbjct: 363 TIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQL 422

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G + H Y+ +     N  ++NAL DMYA CG                             
Sbjct: 423 GAQIHGYIIKTGNF-NDFVQNALIDMYAKCGF---------------------------- 453

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
              V  A + F+++ E+  V W +MI G+ +     EA+TLF +M  + ++ D+ T +S+
Sbjct: 454 ---VHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSV 510

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           + AC++LG LE G+WV   +    ++ D ++  AL DMY KCG+++ A  VF  M  +  
Sbjct: 511 IQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSI 570

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +W+ MI G  ++G  + ++ +F+QML + I P+++T++ +LSAC+H G V+EG+ YF  
Sbjct: 571 VSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNS 630

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           M+ + G+EP   H+ CMVDLL RAG LN A ++I ++P   NS +WGALL  CR+H+  +
Sbjct: 631 MS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRID 689

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           + +   K +L++D  +   Y LL NIYA    WD F ++R M+  +G++K PG S IE++
Sbjct: 690 IIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEID 749

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
             ++ F  GD SH QTK+IY  L+   S +    Y  +     +   + +KE  V  HSE
Sbjct: 750 KKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSE 809

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           KLA+AFG+I++ PG T+RI KNLR+C DCH  AK+ S +  RE+I+RD  RFH F++GSC
Sbjct: 810 KLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSC 869

Query: 715 SCKDYW 720
           SC DYW
Sbjct: 870 SCNDYW 875



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 233/501 (46%), Gaps = 37/501 (7%)

Query: 26  CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT 85
           C +   L Q+H+     GL  +P    KL+    ++ G  + + +VF   P+P   +W  
Sbjct: 11  CATSTTLTQLHAHLFITGLHRHPPASTKLIE-SYAQIGIFESSKRVFDTFPKPDSFMWGV 69

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF 144
           +IK Y      +  V +Y +M+  D  +  N+ FP +LK  +    +  G ++H  V+K 
Sbjct: 70  LIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKC 129

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           GF+S   V+ +L+  Y     +D A   FD     DVV W+++   + +  Q  E   +F
Sbjct: 130 GFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMF 189

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
            +M  + V P SVT++ V  AC++L  L +G+  H YV   +I  N  L N+L  MY   
Sbjct: 190 SQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKL 249

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
           G++  A  +F N+  +    WT +++ Y   G                            
Sbjct: 250 GDLYSAERLFENVPCRMTAPWTPMISCYNQSGC--------------------------- 282

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI- 383
               F+EAL +F +MQ   + P++ T+V +L ACA LG ++ G  V  ++ +  +  ++ 
Sbjct: 283 ----FQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELD 338

Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
           F+G AL+++Y   G++    +VF  +  K   +W  +I     NG  +++L +F QM   
Sbjct: 339 FLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQ 398

Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
            ++PD  +    LSAC        G +      I+ G   N+     ++D+  + G ++ 
Sbjct: 399 GLMPDSYSLASSLSACGTISFSQLGAQIHG-YIIKTG-NFNDFVQNALIDMYAKCGFVHS 456

Query: 504 ALEVIKNMPMKPNSIVWGALL 524
           A ++ + +  K + + W +++
Sbjct: 457 ANKMFEKIKEK-SLVTWNSMI 476



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 139/295 (47%), Gaps = 11/295 (3%)

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNI 344
           T ++  Y   G  + +++ FD  P+ D  +W  +I  Y+    F EA++L+ EM      
Sbjct: 37  TKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQT 96

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           +   F   S+L AC+  G L +G  V   + K   ++D  V  +L+ MY +   ++ A +
Sbjct: 97  QISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACK 156

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
            F  M  +D   W+++++    NG   + LDMFSQM+  ++ PD VT + V  AC+  G 
Sbjct: 157 AFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGS 216

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           +  GR       ++  IE N +    ++ + G+ G L  A  + +N+P +  +  W  ++
Sbjct: 217 LRLGRSVHG-YVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTA-PWTPMI 274

Query: 525 GACRVHR---DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
            +C          +   A  Q  +++P+   +  +LC    AC R    +E R +
Sbjct: 275 -SCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLC----ACARLGRVKEGRSV 324


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/704 (34%), Positives = 379/704 (53%), Gaps = 37/704 (5%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L++     +S+    QIHSQ +      +    N L+    ++ G + +   +F   P P
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLY-AKCGSIHHTLLLFNTYPHP 161

Query: 79  S--VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           S  V  W T+I   SR +     +  +  M  + + P+++TF  +L        +  G++
Sbjct: 162 STNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQ 221

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  + K  F +  FV  AL+  Y  CG + +A  +FD     ++V+WN+M  G+ + K 
Sbjct: 222 IHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKL 281

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
           +     +F E+   G  P  V+I  VLSACA L +LD GK+ H  + +  +V  + ++N+
Sbjct: 282 YGRAIGVFREVLSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNS 339

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L DMY  CG    A ++F    ++DV++                               W
Sbjct: 340 LVDMYCKCGLFEDATKLFCGGGDRDVVT-------------------------------W 368

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
             MI G  R   F +A T F+ M    + PDE +  S+  A A++ AL  G  + +++ K
Sbjct: 369 NVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLK 428

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
                +  + ++L+ MY KCG +  A +VFRE    +   WTAMI     +G  ++++ +
Sbjct: 429 TGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKL 488

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F +ML   ++P+ +T+V VLSAC+HTG +D+G +YF  M   H I+P   HY CMVDLLG
Sbjct: 489 FEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLG 548

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R G L EA   I++MP +P+S+VWGALLGAC  H + EM    A+++ +L+PDN   Y+L
Sbjct: 549 RVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYML 608

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           L NIY      +   E+R+++   G++K  GCS I++      F A D+SH +T+EIY  
Sbjct: 609 LSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGM 668

Query: 617 LDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKN 676
           L ++   +K  GY+ + ++   +  E  +E++++ HSEKLA+AFGL+   PG  +RI KN
Sbjct: 669 LQKLKELIKRRGYVAE-TQFATNSVEGSEEQSLWCHSEKLALAFGLLVLPPGSPVRIKKN 727

Query: 677 LRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LR C DCH + K  S ++ RE+IVRD  RFH F +GSCSC DYW
Sbjct: 728 LRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/689 (34%), Positives = 374/689 (54%), Gaps = 38/689 (5%)

Query: 35  IHSQTIKLGLLTNPTVQNKLV---TFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           IH+   KLG   N  V   L+   + C    G + +A  VF  I       W  M+  YS
Sbjct: 170 IHACACKLGHDRNAFVGTALIDAYSLC----GAVCHARCVFDGIVGKDAVTWTAMVSCYS 225

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
             D  +  +  +  M  +  +P+ +     LK      +   GK +H   +K  +D+   
Sbjct: 226 ENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPH 285

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V  AL+  Y  CG+++ A  IF++   DDV+ W+ + S Y +  Q ++  ++F  M R  
Sbjct: 286 VGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSF 345

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V+P   ++  VL ACA +  L++G++ H    +      L + NAL DMYA C  M  +L
Sbjct: 346 VVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSL 405

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           EIF ++++ + +SW  I+ GY   G  +                               +
Sbjct: 406 EIFSSLQDANEVSWNTIIVGYCQSGFAE-------------------------------D 434

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL++F EM+ +++   + T  S+L ACAN  +++    + + I+K+   ND  V N+LID
Sbjct: 435 ALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLID 494

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
            Y KCG +  A +VF  ++  D  +W ++I   A++G    +L++F +M ++ I  ++VT
Sbjct: 495 TYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVT 554

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +V +LS C  TG+V++G   F  M + H I+P+  HY C+V LLGRAG L +AL+ I ++
Sbjct: 555 FVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDI 614

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P  P+ +VW ALL +C VH++  +   AA+++L+++P +E  YVLL N+YAA    D   
Sbjct: 615 PSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVA 674

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
             R+ + + G+KK  G S +E+ G VH F  G   HP  + I   L+ +       GY+P
Sbjct: 675 LWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYVP 734

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           DI+ V  DV EE+K R ++ HSE+LA+A+GL  + PG  IRI+KNLR C+DCH M K++S
Sbjct: 735 DINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTMFKVIS 794

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +  RE+IVRD  RFHHF+ G CSC DYW
Sbjct: 795 KIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 204/438 (46%), Gaps = 37/438 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K IH  ++K    T P V   L+    ++ GD++ A  +F  IP   V LW+ +I  Y++
Sbjct: 269 KGIHGCSVKTLYDTEPHVGGALLDMY-AKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQ 327

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              ++    ++L M++S V P+ ++   +L+       +E G+++H   +K G++S +FV
Sbjct: 328 SCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFV 387

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NAL+  Y  C  ++ +  IF      + V+WN +  GY +    ++   +F EM    +
Sbjct: 388 GNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHM 447

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
           L T VT   VL ACA    +    + H  +++     + I+ N+L D YA CG +  AL+
Sbjct: 448 LSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALK 507

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F +I   DV+SW +I++ Y   G+   A + FD+                         
Sbjct: 508 VFESIVECDVVSWNSIISAYALHGRATNALELFDR------------------------- 542

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGNALID 391
                 M  S+I+ ++ T VS+L+ C + G +  G W+  + +  +++K  +     ++ 
Sbjct: 543 ------MNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVR 596

Query: 392 MYCKCGDVEKAQRVFREMLRK-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DE 449
           +  + G +  A +   ++        W A++    +  H + +L  ++      I P DE
Sbjct: 597 LLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVV--HKNVALGRYAAEKVLDIEPHDE 654

Query: 450 VTYVGVLSACTHTGMVDE 467
            TYV + +     G++DE
Sbjct: 655 TTYVLLSNMYAAAGILDE 672



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/451 (24%), Positives = 201/451 (44%), Gaps = 41/451 (9%)

Query: 85  TMIKGYSRIDSHKNGVLIYLD-MLKSDVRP--DNYTFP-FLLKGFTRDIAVEFGKELHCH 140
           + I G    +   N  L +LD  L S   P  D+Y    FL +   R  A   G+ +H  
Sbjct: 12  SQINGLLSRNLAANEALQWLDDELASLALPKLDSYACARFLQRCIARGDA-RAGRAVHAR 70

Query: 141 VLKFGFDSSV--FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
           V++ G  + +  F  N L++ Y   G +  AR +FD   + + V++  +  GY    +F+
Sbjct: 71  VVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFE 130

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E  +LF  ++R+G       +  +L     +    +    H    +     N  +  AL 
Sbjct: 131 EALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALI 190

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           D Y+ CG +  A  +F  I  KD ++WTA+V+ Y             + +PE        
Sbjct: 191 DAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSE-----------NDIPEY------- 232

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
                        AL  F +M+ +  +P+ F + S L A   L +  LG+ +     K  
Sbjct: 233 -------------ALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTL 279

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
              +  VG AL+DMY KCGD+E A  +F  +   D   W+ +I   A +   +++ +MF 
Sbjct: 280 YDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFL 339

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M+R+ ++P+E +  GVL AC +   ++ G E   ++ I+ G E        ++D+  + 
Sbjct: 340 RMMRSFVVPNEFSLSGVLQACANIAFLELG-EQIHNLAIKLGYESELFVGNALMDMYAKC 398

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALL-GACR 528
            ++  +LE+  ++    N + W  ++ G C+
Sbjct: 399 RNMENSLEIFSSL-QDANEVSWNTIIVGYCQ 428



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 154/365 (42%), Gaps = 25/365 (6%)

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
           G +   D      ++  Y   G +  AR+ FD MPER+ V +  ++ GY     F EAL 
Sbjct: 75  GGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALE 134

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LFR +Q      + F + +IL     + A  L   +     K     + FVG ALID Y 
Sbjct: 135 LFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYS 194

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
            CG V  A+ VF  ++ KD  TWTAM+   + N   + +L+ FS+M      P+      
Sbjct: 195 LCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTS 254

Query: 455 VLSA--CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
            L A  C  + ++ +G    +  T+ +  EP+    G ++D+  + G + +A  + + +P
Sbjct: 255 ALKAAVCLSSALLGKGIHGCSVKTL-YDTEPHVG--GALLDMYAKCGDIEDAHAIFEMIP 311

Query: 513 MKPNSIVWGALLGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
              + I+W  L+         E A EM  + +      NE     L  +  AC     F 
Sbjct: 312 -HDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNE---FSLSGVLQACANI-AFL 366

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
           EL + I +  IK           G   E   G+       ++Y K   M + L+    + 
Sbjct: 367 ELGEQIHNLAIKL----------GYESELFVGNA----LMDMYAKCRNMENSLEIFSSLQ 412

Query: 632 DISEV 636
           D +EV
Sbjct: 413 DANEV 417


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/559 (40%), Positives = 328/559 (58%), Gaps = 33/559 (5%)

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G++  AR +FD  +K     WN +  GY +    D+   ++G+M   GV P   T   V+
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            ACA+L +L  G   H +V +  +     +   L  MY   GE+G A  +FG+       
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGS------- 195

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
                                   M ERD V W A+I   ++     +AL  FREM  + 
Sbjct: 196 ------------------------MVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAG 231

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           I+PD  TIVS L+AC +LG LE GE +  +  +  + ++I V NA +DM  KCGD++KA 
Sbjct: 232 IKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAM 291

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
            +F EM +++  +W+ +I G A+NG  +K+L +FS+M    + P+ VT++ VLSAC+HTG
Sbjct: 292 NLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTG 351

Query: 464 MVDEGREYFADM--TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
            V+EG +YF  M  +    I+P + HY CMVDLLGR+GHL EA   IK MP++ +  +WG
Sbjct: 352 RVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWG 411

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
           ALLGAC +H++ ++ +  A  + EL P+  + +VLL N+YAA  RW    ++RQ +  +G
Sbjct: 412 ALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKG 471

Query: 582 IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
            +K    S +E NG +H    GDKSHPQ+  I  KL+++   +K +GY+P+   VF DV 
Sbjct: 472 ARKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVE 531

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
           +E+KE  +  HSEKLA+AF LI+  P   IR++KNLR+C DCH   KLVS +  RE+I+R
Sbjct: 532 DEEKESTLSTHSEKLAIAFSLINGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMR 591

Query: 702 DKTRFHHFKHGSCSCKDYW 720
           DK RFHHFK+G CSCKD+W
Sbjct: 592 DKNRFHHFKNGICSCKDFW 610



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 193/401 (48%), Gaps = 41/401 (10%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GDM YA ++F ++ +P   LWNT++KGY +       V +Y  M    VRPD +TFPF++
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K       +  G  +H HV+K G +    V+  L+  Y   GE+  A  +F    + D+V
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
            WNA+ +   +     +  + F EM   G+ P SVTIV  LSAC  L  L+ G+  + + 
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
           +E  I  N+I+ NA  DM A CG+M  A+ +F  +  ++VISW+ ++ GY   G+ +   
Sbjct: 263 REEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESE--- 319

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                       +AL LF  M+   ++P+  T +++L+AC++ G
Sbjct: 320 ----------------------------KALALFSRMKNQGVQPNYVTFLAVLSACSHTG 351

Query: 363 ALELG----EWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFT 416
            +  G     ++    DKN + + + +    ++D+  + G +E+A    + M +  D   
Sbjct: 352 RVNEGWQYFNFMAQSDDKNIQPRKEHYA--CMVDLLGRSGHLEEAYNFIKIMPIEADPGI 409

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
           W A++   AI  H +  L      L   + P+  +Y  +LS
Sbjct: 410 WGALLGACAI--HQNIKLGQHVADLLFELAPEIASYHVLLS 448


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/608 (36%), Positives = 355/608 (58%), Gaps = 6/608 (0%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS---EKGDMK--YACKVFRKIPR 77
           ++ C S+  L Q+H+  +  G     +V  +LV   C+     GD+   +A ++F ++P 
Sbjct: 10  LQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCHARRMFDRVPD 69

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
           P    +N++I+ YS     +  + ++ D+L+  + P+ +T PF+LK  +R  A E     
Sbjct: 70  PDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALAT 129

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKRVKQ 196
           H   +K G+   VFV NAL+ +    G +  +R +F +++   +VV+WN M  G  +  +
Sbjct: 130 HGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGE 189

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
             E   LF EM R+GVL    T V +L  C+K  +L+VG+  H ++       +LIL NA
Sbjct: 190 TSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNA 249

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L DMY  CG++  A   F  +  K+V+SWT+++      G VD AR +F+QMPER+ + W
Sbjct: 250 LVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISW 309

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
            AMI  Y++  RF E L L+  M++  + PDE T+  +L+     G L  G  +  YI  
Sbjct: 310 NAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQD 369

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           +     + V N+LIDMY +CG V+ +  +F EM  K+  +W  +I  LA++G   +++  
Sbjct: 370 SFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMF 429

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
           F  M+  +  PDE+T+VG+LSAC+H G++++G+ YF  M   + ++P   HY CMVDLLG
Sbjct: 430 FRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLG 489

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           R GHL +A+++IK+MPMKP+ +VWGAL+GACR+H   E+ ++A KQ+LEL+  N  ++VL
Sbjct: 490 RHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELEGINGGLFVL 549

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
           + N+     +W++ + LR+++ DRG KK  G S IE+N  +HEF   D  H  + +IY  
Sbjct: 550 ISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINNSIHEFGVEDIRHESSSQIYAA 609

Query: 617 LDEMTSDL 624
           +D++   L
Sbjct: 610 VDQLAYHL 617


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/444 (46%), Positives = 290/444 (65%), Gaps = 3/444 (0%)

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           +D +  T+++  Y NRG  D AR+ FD+MP RD V W  +I  Y R  R ++AL LF EM
Sbjct: 168 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 227

Query: 340 --QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
             + S   PD+ T + +L AC++LGAL+ GE V  Y +++    ++ V N+LI MY +CG
Sbjct: 228 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 287

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            V+KA RVF    +K   TWTAMI GLA NG G+ ++ +F +M+R+ + PDE T+ GVLS
Sbjct: 288 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 347

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN-MPMKPN 516
           AC+H+G+VDEG  +F  M  ++G++PN  HYGC+VDL+GRAG L+EA E + N M + P+
Sbjct: 348 ACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPD 407

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           + +W  LLGACR+H   ++ E     ++EL       YVLL N YAA   W    E+R++
Sbjct: 408 ATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKL 467

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + + GI+ TPGC+ +E NG VHEF+A D +HP+  EIY  L E+   L+  GY+P++S  
Sbjct: 468 MQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSSE 527

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             D+  E KE A+  HSEKLA+AF L+ +     IR+ KNLR+CVDCH   K+ S +Y R
Sbjct: 528 LHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYRR 587

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
            VIVRD+TRFHHF+ G CSC DYW
Sbjct: 588 IVIVRDRTRFHHFQGGKCSCNDYW 611



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 151/329 (45%), Gaps = 15/329 (4%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S+   +Q+H+  +  G L +  +   L+  C + +GD   A K+F ++P      WN +I
Sbjct: 150 SLAHARQLHANVVAEGHLRDALLATSLMR-CYANRGDGDGARKLFDEMPVRDAVAWNVLI 208

Query: 88  KGYSRIDSHKNGVLIYLDML--KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
             Y+R    K+ + ++ +M    S+  PD+ T   LL+  +   A++FG+++  +  + G
Sbjct: 209 TCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHG 268

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           +   + V+N+LI+ Y  CG VD A  +F  + +  VVTW AM SG       ++   +F 
Sbjct: 269 YGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFE 328

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAAC 264
           EM R  V P   T   VLSAC+    +D G R    ++ E  + PN+     + D+    
Sbjct: 329 EMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRA 388

Query: 265 GEMGFALEIFGNIKN--KDVISWTAIVTGYINRGQVDMARQYFDQMPE------RDYVLW 316
           G +  A E   N      D   W  ++      G VD+  +    + E       DYVL 
Sbjct: 389 GLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVL- 447

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIR 345
             +++ Y  V  + +   + + MQ   I+
Sbjct: 448 --LLNTYAAVGEWSKVSEIRKLMQEEGIQ 474


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/702 (33%), Positives = 384/702 (54%), Gaps = 36/702 (5%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           I+ C  ++ L   +++H + IK GL  +  + N L+    ++ G ++ A  VFR++P   
Sbjct: 133 IKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMY-AKIGCIESAEMVFREMPVRD 191

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           +  WN+MI GY  +      +  + +M  S ++ D ++   +L   + +  +  GKE+HC
Sbjct: 192 LVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHC 251

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            +++   +  V VQ +L+  Y  CG +D A  +FD      +V WNAM  GY    Q  E
Sbjct: 252 QMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFE 311

Query: 200 TRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           +     +M+  G L P  +T++ +L  CA+L+ + +GK  H +      +P+L+LE AL 
Sbjct: 312 SFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALV 371

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMY  CG++  A  +FG                               QM ER+ + W A
Sbjct: 372 DMYGECGKLKPAECLFG-------------------------------QMNERNLISWNA 400

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           MI  Y +    R+A+TLF+++    ++PD  TI SIL A A L +L   E +  Y+ K K
Sbjct: 401 MIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLK 460

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           + ++ FV N+++ MY KCG++ +A+ +F  M  KD  +W  +I+  AI+G G  S+++FS
Sbjct: 461 LDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFS 520

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M      P+  T+V +L +C+  G+V+EG EYF  M   + I P   HYGC++DL+GR 
Sbjct: 521 EMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRT 580

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G+L+ A   I+ MP+ P + +WG+LL A R   D E+AE+AA+ IL L+ DN   YVLL 
Sbjct: 581 GNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLS 640

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           N+YA   RW++   ++  +   G++K+ GCS+++++     FV  D+S  +   +Y  LD
Sbjct: 641 NMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLD 700

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
            ++  +    Y+  +++      E+ +  +   HS +LA+ FGLIS+  G  + + KN+R
Sbjct: 701 IISKKIGEDVYVHSLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIGNPVLVRKNIR 760

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C  CHR AK +S    RE+IVRD   FHHF  G CSC DYW
Sbjct: 761 ICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW 802



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 180/380 (47%), Gaps = 35/380 (9%)

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           +SV +  AL S+Y   G +  A  +F+   + D   WN M  G+     F +    +  M
Sbjct: 59  NSVSLTRAL-SSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRM 117

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           E  GV   + T   V+ AC  L DL  G+R H  V +  +  ++ + N+L  MYA  G +
Sbjct: 118 EFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCI 177

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  +F  +  +D++SW ++++GY++ G                        DG+    
Sbjct: 178 ESAEMVFREMPVRDLVSWNSMISGYVSVG------------------------DGW---- 209

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
               +L+ FREMQ S I+ D F+++ IL AC+  G L  G+ +   + +++++ D+ V  
Sbjct: 210 ---RSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQT 266

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII- 446
           +L+DMY KCG ++ A+R+F ++  K    W AMI G ++N    +S     +M     + 
Sbjct: 267 SLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLH 326

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD +T + +L  C     +  G+       I++G  P+      +VD+ G  G L  A E
Sbjct: 327 PDWITMINLLPPCAQLEAILLGKSVHG-FAIRNGFLPHLVLETALVDMYGECGKLKPA-E 384

Query: 507 VIKNMPMKPNSIVWGALLGA 526
            +     + N I W A++ +
Sbjct: 385 CLFGQMNERNLISWNAMIAS 404



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 146/288 (50%), Gaps = 9/288 (3%)

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           ++ +S T  ++ Y+ RG +  A   F+ M + D  +W  MI G++    F +A+  +  M
Sbjct: 58  RNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRM 117

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
           +   +R D FT   ++ AC  L  L  GE V   + K+ +  DI++GN+LI MY K G +
Sbjct: 118 EFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCI 177

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           E A+ VFREM  +D  +W +MI G    G G +SL  F +M  + I  D  + +G+L AC
Sbjct: 178 ESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGAC 237

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +  G +  G+E    M ++  +E +      +VD+  + G ++ A  +   +  K + + 
Sbjct: 238 SLEGFLRNGKEIHCQM-MRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDK-SIVA 295

Query: 520 WGALLGACRVHRDAEMAEMAAKQILE---LDPDNEAVYVLLCNIYAAC 564
           W A++G   ++  +  +    +++ E   L PD    ++ + N+   C
Sbjct: 296 WNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPD----WITMINLLPPC 339


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 359/617 (58%), Gaps = 12/617 (1%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           +  LI     C S+   +Q+  +  +  + T  +V   L        G +  A  +FR +
Sbjct: 58  QNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL-----GFLDEADSLFRSM 112

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P    C WN+M+ G+++ D  +  +  +  M K     + Y+F  +L   +    +  G 
Sbjct: 113 PERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGV 172

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  + K  F S V++ +AL+  Y  CG V+ A+ +FD     +VV+WN++ + +++  
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNG 232

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILE 254
              E   +F  M    V P  VT+  V+SACA L  + VG+  H R VK  K+  ++IL 
Sbjct: 233 PAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILS 292

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           NA  DMYA C  +  A  IF ++  ++VI+ T++++GY        AR  F +M ER+ V
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVV 352

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W A+I GY +     EAL+LF  ++  ++ P  ++  +IL ACA+L  L LG     ++
Sbjct: 353 SWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHV 412

Query: 375 DKNKVK------NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            K+  K      +DIFVGN+LIDMY KCG VE+   VFR+M+ +D  +W AMI+G A NG
Sbjct: 413 LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNG 472

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
           +G+++L++F +ML +   PD +T +GVLSAC H G V+EGR YF+ MT   G+ P   HY
Sbjct: 473 YGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY 532

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
            CMVDLLGRAG L EA  +I+ MPM+P+S++WG+LL AC+VHR+  + +  A+++LE++P
Sbjct: 533 TCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEP 592

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
            N   YVLL N+YA   +W++   +R+ +   G+ K PGCS I++ G  H F+  DKSHP
Sbjct: 593 SNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHP 652

Query: 609 QTKEIYLKLDEMTSDLK 625
           + K+I+  LD + ++++
Sbjct: 653 RKKQIHSLLDILIAEMR 669



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 212/480 (44%), Gaps = 101/480 (21%)

Query: 114 DNYTFPFLLKGFTRD-IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           D+  F  LL    +  ++  + + +H  V+K GF + +F+QN LI  Y  CG ++  R +
Sbjct: 18  DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKL----------------------------- 203
           FD   + ++ TWN++ +G  ++   DE   L                             
Sbjct: 78  FDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137

Query: 204 --FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
             F  M ++G +    +   VLSAC+ L D++ G + H  + +   + ++ + +AL DMY
Sbjct: 138 CYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMY 197

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           + CG +  A  +F  + +++V+SW +++T +   G                         
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPA----------------------- 234

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-KVK 380
                    EAL +F+ M  S + PDE T+ S+++ACA+L A+++G+ V   + KN K++
Sbjct: 235 --------VEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLR 286

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRV-------------------------------FREM 409
           NDI + NA +DMY KC  +++A+ +                               F +M
Sbjct: 287 NDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKM 346

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT-----HTGM 464
             ++  +W A+I G   NG  +++L +F  + R S+ P   ++  +L AC      H GM
Sbjct: 347 AERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGM 406

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
                        Q G E +      ++D+  + G + E   V + M M+ + + W A++
Sbjct: 407 QAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMI 465



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 171/351 (48%), Gaps = 14/351 (3%)

Query: 222 VLSACAKLKDLDVGKR-AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
           +L +C K K   +  R  H  V +      + ++N L D Y+ CG +    ++F  +  +
Sbjct: 25  LLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQR 84

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           ++ +W ++VTG    G +D A   F  MPERD   W +M+ G+ + +R  EAL  F  M 
Sbjct: 85  NIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMH 144

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
                 +E++  S+L+AC+ L  +  G  V + I K+   +D+++G+AL+DMY KCG+V 
Sbjct: 145 KEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVN 204

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
            AQRVF EM  ++  +W ++I     NG   ++LD+F  ML + + PDEVT   V+SAC 
Sbjct: 205 DAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA 264

Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK----PN 516
               +  G+E    +     +  +       VD+  +   + EA  +  +MP++      
Sbjct: 265 SLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAET 324

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDP---------DNEAVYVLLC 558
           S++ G  + A          +MA + ++  +          +NE    L C
Sbjct: 325 SMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/444 (46%), Positives = 290/444 (65%), Gaps = 3/444 (0%)

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           +D +  T+++  Y NRG  D AR+ FD+MP RD V W  +I  Y R  R ++AL LF EM
Sbjct: 154 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 213

Query: 340 --QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
             + S   PD+ T + +L AC++LGAL+ GE V  Y +++    ++ V N+LI MY +CG
Sbjct: 214 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 273

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            V+KA RVF    +K   TWTAMI GLA NG G+ ++ +F +M+R+ + PDE T+ GVLS
Sbjct: 274 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 333

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN-MPMKPN 516
           AC+H+G+VDEG  +F  M  ++G++PN  HYGC+VDL+GRAG L+EA E + N M + P+
Sbjct: 334 ACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPD 393

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           + +W  LLGACR+H   ++ E     ++EL       YVLL N YAA   W    E+R++
Sbjct: 394 ATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKL 453

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + + GI+ TPGC+ +E NG VHEF+A D +HP+  EIY  L E+   L+  GY+P++S  
Sbjct: 454 MQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSSE 513

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             D+  E KE A+  HSEKLA+AF L+ +     IR+ KNLR+CVDCH   K+ S +Y R
Sbjct: 514 LHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYRR 573

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
            VIVRD+TRFHHF+ G CSC DYW
Sbjct: 574 IVIVRDRTRFHHFQGGKCSCNDYW 597



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 151/329 (45%), Gaps = 15/329 (4%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           S+   +Q+H+  +  G L +  +   L+  C + +GD   A K+F ++P      WN +I
Sbjct: 136 SLAHARQLHANVVAEGHLRDALLATSLMR-CYANRGDGDGARKLFDEMPVRDAVAWNVLI 194

Query: 88  KGYSRIDSHKNGVLIYLDML--KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
             Y+R    K+ + ++ +M    S+  PD+ T   LL+  +   A++FG+++  +  + G
Sbjct: 195 TCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHG 254

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           +   + V+N+LI+ Y  CG VD A  +F  + +  VVTW AM SG       ++   +F 
Sbjct: 255 YGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFE 314

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAAC 264
           EM R  V P   T   VLSAC+    +D G R    ++ E  + PN+     + D+    
Sbjct: 315 EMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRA 374

Query: 265 GEMGFALEIFGNIKN--KDVISWTAIVTGYINRGQVDMARQYFDQMPE------RDYVLW 316
           G +  A E   N      D   W  ++      G VD+  +    + E       DYVL 
Sbjct: 375 GLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVL- 433

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIR 345
             +++ Y  V  + +   + + MQ   I+
Sbjct: 434 --LLNTYAAVGEWSKVSEIRKLMQEEGIQ 460


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/577 (38%), Positives = 350/577 (60%), Gaps = 26/577 (4%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPR 77
           ++S +E C++M +LK++H   I   ++ +    ++LV FC  S+ G++ YA  VF +I R
Sbjct: 8   ILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDR 67

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
           PS+ +WN+MIKGYS  +S    + +Y +M +    PD++TFPF+LK  +       G+ +
Sbjct: 68  PSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCV 127

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H  ++K GF+  V+   AL+  Y  CG+++ A  +FD   K +VV W ++ +G       
Sbjct: 128 HNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCP 187

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
            E  +++ +ME   V P  +T+V VL ACA+ +DL+ G+  H                  
Sbjct: 188 SEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRT--------------- 232

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
                  G+MG  L+ F +  N +VI  TAIV  Y   G +  AR  F++MP R+ V W 
Sbjct: 233 -------GQMG--LDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWN 283

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           +MI  Y +  +  EAL LF +M+ +   PD+ T + ++ ACA+LGAL  G+ +  Y+ K 
Sbjct: 284 SMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKT 343

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            + +D  +G AL+DMY K GD E+AQ+VF E+ +KD   WT++I+GLA++GHG+++L  F
Sbjct: 344 NLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFF 403

Query: 438 SQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
            +M    ++IPDE+TY+GVLSAC+H G V++G+ +F  M   HGIEP   HYGCMVDLL 
Sbjct: 404 KKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLS 463

Query: 497 RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556
           RAG L EA  +++ MP++PN+ +W ALL  C+++++ ++A+   +++ EL+ D   VYVL
Sbjct: 464 RAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVL 523

Query: 557 LCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           L NIYA   RW+  +  R+++ +R I+K+ G S +EM
Sbjct: 524 LSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVEM 560


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/697 (34%), Positives = 380/697 (54%), Gaps = 46/697 (6%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K +H   +KL L     V N L+    S+ G +  A  +F+     +V  WNTM+ G+S 
Sbjct: 309 KGVHGLAMKLSLDKEVVVNNALMDMY-SKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSA 367

Query: 93  I-DSHKNGVLIYLDMLK------SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
             D HK       D+L+       D+R D  T    +     +  +   KELHC+ LK  
Sbjct: 368 AGDIHKT-----FDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQE 422

Query: 146 F-DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           F  ++  V NA +++Y  CG +  A  +F       V +WNA+  GY +      +   +
Sbjct: 423 FVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAY 482

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
            +M+  G+LP   T+  +LSAC+++K L +GK  H           LI+ N L       
Sbjct: 483 FQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVH----------GLIIRNRL------- 525

Query: 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYL 324
                          +D   + ++++ YI+ G++  A   FD M ++  V W  M++GYL
Sbjct: 526 --------------ERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYL 571

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
           +      AL+LFR+M    ++P E +++S+  AC+ L +L LG     Y  K  ++++ F
Sbjct: 572 QNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAF 631

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           +  ++IDMY K G V ++ +VF  +  +   +W AM++G  I+G   +++ +F +M R  
Sbjct: 632 IACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTG 691

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
             PDE+T++GVL+AC H+G+V EG  Y   M    G+ P   HY C++D+L RAG L+EA
Sbjct: 692 HCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEA 751

Query: 505 LEV-IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563
           L++  + M  +P   +W  LL +CR+H++ EM E  A ++   +P+    YVLL N+YA 
Sbjct: 752 LKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAG 811

Query: 564 CNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSD 623
             +WD  R++RQ + +  ++K  GCS IE+NG V  FVAG+ S    +EI      +  +
Sbjct: 812 SGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLERE 871

Query: 624 LKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDC 683
           +  +GY PD S V  D+ EE+K   +  HSEKLA+ +GLI +  G T+R+ KNLR+CVDC
Sbjct: 872 IGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDC 931

Query: 684 HRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           H  AKL+S V +RE++VRD  RFHHFK+G CSC DYW
Sbjct: 932 HNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 221/480 (46%), Gaps = 40/480 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           ++IH    +   L+N  V    V    S  G    +  VF  + + ++  WN +I  YSR
Sbjct: 101 RKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSR 160

Query: 93  IDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
            + + N + +++ M+ +S + PDN+TFP ++K       V+ G  +H  V+K      VF
Sbjct: 161 NELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVF 220

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK- 210
           V NAL+S Y   G V  A  +F +  + ++V+WN+M   +      +E   L G+M  K 
Sbjct: 221 VSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKD 280

Query: 211 ---GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
                 P   T+  VL  CA+ +++ VGK  H    +  +   +++ NAL DMY+ CG +
Sbjct: 281 DEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCI 340

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  IF    NK+V+SW  +V G+   G +    + FD                     
Sbjct: 341 NDAQVIFKLNNNKNVVSWNTMVGGFSAAGDI---HKTFD--------------------- 376

Query: 328 RFREALTLFREMQT--SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK-VKNDIF 384
                  L R+M     ++R DE TI++ +  C     L   + +  Y  K + V N+  
Sbjct: 377 -------LLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNEL 429

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           V NA +  Y KCG +  A RVF  +  K   +W A+I G + +     SLD + QM  + 
Sbjct: 430 VANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSG 489

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           ++PD  T   +LSAC+    +  G+E    + I++ +E +   Y  ++ L    G L+ A
Sbjct: 490 LLPDLFTVCSLLSACSQIKSLKLGKEVHG-LIIRNRLERDSFVYISLLSLYIHCGELSTA 548



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 194/408 (47%), Gaps = 47/408 (11%)

Query: 16  ETPLISPIETC--ES-MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           E  +++ +  C  ES +  LK++H  ++K   + N  +         ++ G + YA +VF
Sbjct: 392 EVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVF 451

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
             I   +V  WN +I GYS+    +  +  Y  M  S + PD +T   LL   ++  +++
Sbjct: 452 CSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLK 511

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            GKE+H  +++   +   FV  +L+S Y  CGE+  A  +FD      +V+WN M +GY 
Sbjct: 512 LGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYL 571

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +    +    LF +M   GV P  ++++ V  AC+ L  L +G+ AH Y  +C +  N  
Sbjct: 572 QNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAF 631

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +  ++ DMYA  G +  + ++F  +K + V SW A+V GY   G                
Sbjct: 632 IACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHG---------------- 675

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
                          R +EA+ LF EMQ +   PDE T + +LTAC + G +  G    T
Sbjct: 676 ---------------RAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEG---LT 717

Query: 373 YIDKNKVKNDIFVGN-------ALIDMYCKCGDVEKAQRVFREMLRKD 413
           Y+D+ K    +F  N        +IDM  + G +++A ++  E + ++
Sbjct: 718 YLDQMKT---LFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEE 762



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 146/345 (42%), Gaps = 37/345 (10%)

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           A  + KD+ +G++ H+ V E                                + N DV+ 
Sbjct: 90  ASGRRKDIQLGRKIHQLVSES-----------------------------ARLSNDDVLC 120

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT-SN 343
            T ++T Y   G  D +R  FD + +++   W A+I  Y R   +   L +F +M T S 
Sbjct: 121 -TRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESG 179

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           + PD FT   ++ ACA +  +++G  V   + K ++  D+FV NAL+  Y   G V  A 
Sbjct: 180 LLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDAL 239

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA----SIIPDEVTYVGVLSAC 459
           RVF+ M  ++  +W +MI   + NG  ++   +  QM+      +  PD  T   VL  C
Sbjct: 240 RVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVC 299

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
                +  G+     + ++  ++        ++D+  + G +N+A +VI  +    N + 
Sbjct: 300 ARDREIGVGKGVHG-LAMKLSLDKEVVVNNALMDMYSKCGCINDA-QVIFKLNNNKNVVS 357

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
           W  ++G      D        +Q+L    D  A  V + N    C
Sbjct: 358 WNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/621 (35%), Positives = 357/621 (57%), Gaps = 4/621 (0%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK---G 63
           ++P         L   +  C S+ +L Q+H+  +  G L+  +    L ++C   K   G
Sbjct: 2   LTPARAGHHLPSLQKLLRQCRSIQRLNQLHAHLLVHGSLSAAS-DLLLASYCALAKAGHG 60

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            + +A ++F  IP P   ++NT+I+ Y      +  + ++  ML+  + P+ +T PF++K
Sbjct: 61  VLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVK 120

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
             T   A E    +H   L+ G    VFV NAL+ +Y   G +  +R  FD     +VV+
Sbjct: 121 ACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVS 180

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           WN+M  GY +     E   LFGEM R+G L    T+V +L AC++  +L++G+  H  + 
Sbjct: 181 WNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRML 240

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
                 +LILE+AL DMY  CG++  A   F  +  K V+SWT+++      G V+ AR 
Sbjct: 241 VSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARC 300

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           +FD MPER+ V W AMI  Y++  +  EAL L+ +MQ+  + PDE T+V++L+A   +G 
Sbjct: 301 WFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGD 360

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           L +G+ V  YI  N    D+ + N+L+DMY KCG V+ A  +F EM  ++  +W  +I G
Sbjct: 361 LTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGG 420

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
           LA++G    ++  F  M+  S  PD +T+V +LSAC+H G+++ G+ YF  M   + ++ 
Sbjct: 421 LAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKH 480

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              HY CMVDLLGR GHL +A+ +IK MPMKP+ +VWGALLGACR+H + ++     KQ+
Sbjct: 481 EVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQL 540

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
           LEL+  +  ++VL+ N+    ++W++ + LR+++ + G +K  G S IE+N  +HEF   
Sbjct: 541 LELEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINNSIHEFGVE 600

Query: 604 DKSHPQTKEIYLKLDEMTSDL 624
           D  H ++ EIY  +D+++  L
Sbjct: 601 DIRHERSSEIYAVVDQLSYHL 621


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/712 (36%), Positives = 385/712 (54%), Gaps = 41/712 (5%)

Query: 15  QETPLISP-IETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           Q T L S  I+ C   +S+  + +I S  +K G   + ++ NKL+     + G + YA K
Sbjct: 75  QSTKLYSSLIQQCIGIKSITDITKIQSHALKRGF--HHSLGNKLID-AYLKCGSVVYARK 131

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF ++P   +  WN+MI  Y R    K  + IY  M+   + PD +TF  + K F+    
Sbjct: 132 VFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGL 191

Query: 131 VEFGKELHCHVLKFGFD-SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           V  G+  H   +  G   S+VFV +AL+  Y   G++  AR + D     DVV + A+  
Sbjct: 192 VHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIV 251

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY    +  E+ ++F  M +KG+     T+  VL  C  L+DL  G+  H          
Sbjct: 252 GYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIH---------- 301

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
            LI++  L    A                     S T+++T Y   G VD + + F Q  
Sbjct: 302 GLIVKAGLESAVA---------------------SQTSLLTMYYRCGLVDDSLKVFKQFI 340

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
             + V WT++I G ++  R   AL  FR+M  S+I P+ FT+ S+L AC++L  LE G+ 
Sbjct: 341 NPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQ 400

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           +   + K  +  D +VG ALID Y KCG  E A+ VF  +L  D  +  +MI   A NG 
Sbjct: 401 IHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGF 460

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
           G ++L +FS M    + P+ VT++GVLSAC + G+++EG   F+       IE  + HY 
Sbjct: 461 GHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYA 520

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           CMVDLLGRAG L EA E++ N     + ++W  LL ACR+H D EMA+    ++++L P+
Sbjct: 521 CMVDLLGRAGRLKEA-EMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPE 579

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           +   +VLL N+YA+   W    E++  + +  +KK P  S +++   +H F+AGD SHP 
Sbjct: 580 DGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPN 639

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG-PG 668
            ++I  KL+E+   +K +GY+PD   V  D+ EE K R++Y HSEKLA+AF L  S    
Sbjct: 640 FRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFALWRSNYKN 699

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            TIRI+KNLR+C DCH   K VS +  R++I RD  RFHHF++G CSC DYW
Sbjct: 700 TTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/637 (36%), Positives = 349/637 (54%), Gaps = 69/637 (10%)

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM--- 207
           F+ N L+  Y   G++  A+ +FD   K DV +WN + S Y ++   +    +F +M   
Sbjct: 59  FIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYR 118

Query: 208 ----------------------------ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
                                       +  G  PT  + V  L AC++L DL  GK+ H
Sbjct: 119 DSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIH 178

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG--- 296
             +    +  N  + NA+TDMYA CG++  A  +F  + +K+V+SW  +++GY+  G   
Sbjct: 179 GRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPN 238

Query: 297 --------------------------------QVDMARQYFDQMPERDYVLWTAMIDGYL 324
                                           +VD AR  F ++P++D + WT MI GY 
Sbjct: 239 ECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYA 298

Query: 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384
           +  R  +A  LF +M   N++PD +TI S++++CA L +L  G+ V   +    + N + 
Sbjct: 299 QNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSML 358

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           V +AL+DMYCKCG    A+ +F  M  ++  TW AMI+G A NG   ++L ++ +M + +
Sbjct: 359 VSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQEN 418

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
             PD +T+VGVLSAC +  MV EG++YF D   +HGI P   HY CM+ LLGR+G +++A
Sbjct: 419 FKPDNITFVGVLSACINADMVKEGQKYF-DSISEHGIAPTLDHYACMITLLGRSGSVDKA 477

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
           +++I+ MP +PN  +W  LL  C    D + AE+AA  + ELDP N   Y++L N+YAAC
Sbjct: 478 VDLIQGMPHEPNYRIWSTLLSVC-AKGDLKNAELAASHLFELDPRNAGPYIMLSNLYAAC 536

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
            RW +   +R ++ ++  KK    S +E+   VH FV+ D  HP+  +IY +L+ + S L
Sbjct: 537 GRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISIL 596

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT-IRIVKNLRMCVDC 683
           + +GY PD + V  +VGEE+K R++  HSEKLA+AF LI    GV  IRI+KN+R+C DC
Sbjct: 597 QQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCDDC 656

Query: 684 HRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           H   K  S+   R +I+RD  RFHHF  G CSC D W
Sbjct: 657 HVFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 166/344 (48%), Gaps = 10/344 (2%)

Query: 226 CAKLKDLDVGKRAHRYVKECKIVP-NLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           CA+  D    KR   +++     P +  + N L  +YA  G++  A  +F N+  +DV S
Sbjct: 32  CARANDFIQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYS 91

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           W  +++ Y   G V+     FDQMP RD V +  +I  +       +AL +   MQ    
Sbjct: 92  WNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGF 151

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           +P +++ V+ L AC+ L  L  G+ +   I    +  + FV NA+ DMY KCGD++KA+ 
Sbjct: 152 QPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARL 211

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           +F  M+ K+  +W  MI G    G+ ++ + +F++M  + + PD VT   VL+A    G 
Sbjct: 212 LFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGR 271

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM---PMKPNSIVWG 521
           VD+ R  F  +      + +E  +  M+    + G   +A  +  +M    +KP+S    
Sbjct: 272 VDDARNLFIKLP-----KKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTIS 326

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEA-VYVLLCNIYAAC 564
           +++ +C         ++   +++ +  DN   V   L ++Y  C
Sbjct: 327 SMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKC 370



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 181/416 (43%), Gaps = 74/416 (17%)

Query: 20  ISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           ++ ++ C  +  L   KQIH + +   L  N  V+N + T   ++ GD+  A  +F  + 
Sbjct: 159 VNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAM-TDMYAKCGDIDKARLLFDGMI 217

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             +V  WN MI GY ++ +    + ++ +M  S ++PD  T   +L  + R         
Sbjct: 218 DKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFR--------- 268

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
                                     CG VD AR +F    K D + W  M  GY +  +
Sbjct: 269 --------------------------CGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGR 302

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            ++   LFG+M R+ V P S TI  ++S+CAKL  L  G+  H  V    I  ++++ +A
Sbjct: 303 EEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSA 362

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
           L DMY  CG    A  IF  +  ++VI+W A++ GY   GQV                  
Sbjct: 363 LVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQV------------------ 404

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
                         EALTL+  MQ  N +PD  T V +L+AC N   ++ G+     I +
Sbjct: 405 -------------LEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSISE 451

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF-TWTAMIVGLAINGHGD 431
           + +   +     +I +  + G V+KA  + + M  +  +  W+ +   L++   GD
Sbjct: 452 HGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTL---LSVCAKGD 504


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/740 (34%), Positives = 398/740 (53%), Gaps = 64/740 (8%)

Query: 7   ISPPSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           +  P+ LT      S +  C S  + K    +H + IK GL     + N LVTF   + G
Sbjct: 220 VVAPTELTYA----SVVNACGSSGEEKYGAMVHGRIIKAGL-EATNLWNSLVTFY-GKCG 273

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFL 121
           ++++A ++F +I R  V  WN MI    +    +N + ++  MLK +  V+P+  TF  L
Sbjct: 274 NLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSL 333

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L   +   A+  G+E+H H+ +   +    + N+LI+ Y  C EV  AR IF+     D+
Sbjct: 334 LSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDI 393

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK----LKDLDVGKR 237
           ++WN+M +GY++ +Q      +F  M   G+ P S ++ ++ +A ++    L     GK 
Sbjct: 394 ISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKE 453

Query: 238 AHRYVKECKIVP---NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
            H Y+   +I P   +L + NA+  MYA    +  A +IF  +KN               
Sbjct: 454 IHGYILR-RITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKN--------------- 497

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
                           RD   W AM+DGY R  +F + L +F ++       D  ++  +
Sbjct: 498 ----------------RDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSIL 541

Query: 355 LTACANLGALELGEWVKTYIDKNKVKND-------IFVGNALIDMYCKCGDVEKAQRVFR 407
           LT+C  L +L+LG+     + K     D       + + NALI MY KCG ++ A +VF 
Sbjct: 542 LTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFL 601

Query: 408 EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
           +M RKD F+WTAMI G A +G   ++L +F +M    I P++VT++ +L AC H G+V E
Sbjct: 602 KMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQE 661

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN-----MPMKPNSI-VWG 521
           G  YF  M   +G+ P+  HY CM+DL GR+G  + A  +++       P   + + +W 
Sbjct: 662 GSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWK 721

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
            LLGAC   +  ++   AA +ILEL+P++EA Y+LL N+YA+   W++  ++R+ + D+G
Sbjct: 722 VLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKG 781

Query: 582 IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
           ++K  GCS I+     H FVAGD  HPQ KEIY KL ++    + +GY+P    V  DV 
Sbjct: 782 LRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVD 841

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPG-VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIV 700
           E +KE  +  HSEKLA++FGL++ G G   IR++KNLR+C DCH   K  S++  RE+++
Sbjct: 842 ETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILL 901

Query: 701 RDKTRFHHFKHGSCSCKDYW 720
           RD  RFH F+ GSCSC DYW
Sbjct: 902 RDSQRFHLFRDGSCSCGDYW 921



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 210/479 (43%), Gaps = 51/479 (10%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           SE   +K A ++F   P   V  W+ +I  YSR  +      ++  M+   ++P+ ++  
Sbjct: 66  SEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLA 125

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS--Y 177
            LLK       +   ++LH   ++ GF     ++ A I+ Y  CG ++ A+ +FD +   
Sbjct: 126 SLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLL 185

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGK 236
             D++ WN++ + Y     + E  +LF +M   GV+ PT +T   V++AC    +   G 
Sbjct: 186 ALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGA 245

Query: 237 RAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
             H R +K      NL                                 W ++VT Y   
Sbjct: 246 MVHGRIIKAGLEATNL---------------------------------WNSLVTFYGKC 272

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN--IRPDEFTIVS 353
           G +  A Q F+++  +D V W AMI    +      AL LFR M      ++P+  T +S
Sbjct: 273 GNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLS 332

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           +L+A + L AL  G  +  +I +  ++ D  + N+LI  Y KC +V KA+ +F  +L +D
Sbjct: 333 LLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRD 392

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +W +M+ G   N    +  D+F +M+ + I PD  +   + +A +       G  YF 
Sbjct: 393 IISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRD---SSGLIYFR 449

Query: 474 DMTIQHG-----IEPNEAHYG---CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
                HG     I P          ++ +  +   + +A ++ K M  + +S  W A++
Sbjct: 450 RGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNR-DSYSWNAMM 507



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/515 (21%), Positives = 229/515 (44%), Gaps = 51/515 (9%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS--VCLWNTMIKGY 90
           +Q+H  +I+ G   +  ++   +T   S  G ++ A +VF +    +  + LWN++I  Y
Sbjct: 141 RQLHGWSIRTGFGLDSGIRAAWITMY-SRCGVLEDAQRVFDETSLLALDILLWNSIIAAY 199

Query: 91  SRIDSHKNGVLIYLDMLKSDV-RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
                    + ++  M+   V  P   T+  ++         ++G  +H  ++K G +++
Sbjct: 200 IFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEAT 259

Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
             + N+L++ Y  CG +  A  +F+   + DVV+WNAM +  ++  + +    LF  M +
Sbjct: 260 N-LWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLK 318

Query: 210 --KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
               V P  VT + +LSA + L  L  G+  H ++    +  +  + N+L   Y+ C E+
Sbjct: 319 VEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREV 378

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
           G                                AR+ F+++  RD + W +M+ GY +  
Sbjct: 379 G-------------------------------KAREIFERLLLRDIISWNSMLAGYEQNE 407

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACA----NLGALELGEWVKTYIDKNKVKNDI 383
           +      +F+ M  S I PD  ++  I  A +     L     G+ +  YI +      +
Sbjct: 408 QQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGV 467

Query: 384 F--VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
              V NA++ MY K   +  A+++F+ M  +D ++W AM+ G + N   +  L +F  +L
Sbjct: 468 SLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDIL 527

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT-IQHGIE-PNEAHY----GCMVDLL 495
           +     D V+   +L++C     +  G+++ A +  + +G + P++         ++ + 
Sbjct: 528 KQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMY 587

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            + G + +A +V   M  K +   W A++  C  H
Sbjct: 588 SKCGSIKDAAQVFLKMERK-DVFSWTAMITGCAHH 621


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/737 (33%), Positives = 387/737 (52%), Gaps = 55/737 (7%)

Query: 23   IETCESMHQ--------LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRK 74
            +++C   H         L  +H+ ++K G L      N L+T    +  +M +A K+F +
Sbjct: 291  LQSCSLFHSTISNGPPPLGTLHALSVKNGSLQTLNSANYLLTLYV-KSSNMDHARKLFDE 349

Query: 75   IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
            IP+ +   W  +I G+SR  S +    ++ +M      P+ YT   L K  + DI ++ G
Sbjct: 350  IPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLG 409

Query: 135  KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
            K +H  +L+ G D+ V + N+++  Y  C   + A  +F++  + DVV+WN M S Y R 
Sbjct: 410  KGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRA 469

Query: 195  KQFDETRKLFGEMERKGVLP-------------------------------TSVTIVLVL 223
               +++  +F  +  K V+                                + VT  + L
Sbjct: 470  GDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIAL 529

Query: 224  SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
               + L  +++G++ H  V +     +  + ++L +MY  CG M  A     +I  KDV 
Sbjct: 530  ILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNA-----SIVLKDV- 583

Query: 284  SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
                    ++  G   +  +      +   V W  M+ GY+   ++ + L  FR M    
Sbjct: 584  -----PLDFLKNGNAGVTCKEL----KAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVREL 634

Query: 344  IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
            +  D  T+ +I++ACAN G LE G  V  Y  K   + D +VG++LIDMY K G ++ A 
Sbjct: 635  VVVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAW 694

Query: 404  RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
             +FR+    +   WT+MI G A++G G +++ +F +ML   IIP+EVT++GVL+AC H G
Sbjct: 695  TIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAG 754

Query: 464  MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
            +++EG  YF  M   + I P   H   MVDL GRAGHL E    I    +   + VW + 
Sbjct: 755  LLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSVWKSF 814

Query: 524  LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
            L +CR+H++ EM +  ++ +L++ P +   YVLL N+ A+ +RWD    +R ++  RGIK
Sbjct: 815  LSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGIK 874

Query: 584  KTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEE 643
            K PG S I++   +H F+ GD+SHPQ +EIY  LD +   LK +GY  D+  V  DV EE
Sbjct: 875  KQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEE 934

Query: 644  DKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDK 703
              E  +  HSEKLA+ FG+I++     IRI+KNLR+C DCH   K  S + DRE+I+RD 
Sbjct: 935  QGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIILRDI 994

Query: 704  TRFHHFKHGSCSCKDYW 720
             RFHHFKHG CSC DYW
Sbjct: 995  HRFHHFKHGGCSCGDYW 1011


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/663 (35%), Positives = 355/663 (53%), Gaps = 33/663 (4%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           S+ G++    K F ++P   +  WN +I  Y          L +  ML   + P      
Sbjct: 6   SQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGIS 65

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
             L   T    +  G+ +   +L  G +    VQ AL+S Y   G    A  +F      
Sbjct: 66  IFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHR 125

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           DVV W+AM + Y R     E   LF +M+  GV P  VT+V  L ACA L DL  G   H
Sbjct: 126 DVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMH 185

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
           + V+   I   +++  AL ++Y  CG                               +++
Sbjct: 186 QRVEAQGIQSGVVVGTALVNLYGKCG-------------------------------RIE 214

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
            A + F Q+ E++ V W+A+   Y R +R R+A+ +   M    + P+  T VS+L ACA
Sbjct: 215 AAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACA 274

Query: 360 NLGALELGEWV--KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
            + AL+ G  +  +T +    +++D++V  AL++MY KCG++  A  +F ++   D   W
Sbjct: 275 AIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLW 334

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
            ++I   A +G  +K+L++F +M    + P  +T+  VL AC+H GM+D+GR++F     
Sbjct: 335 NSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIG 394

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
            HGI P   H+GCMVDLLGRAG + ++ +++ +MP +P+ + W A LGACR +R+ + A 
Sbjct: 395 DHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAI 454

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
            AA+ + +LDP   A YVLL N+YA   RW +   +RQ +      K  G S IE+   V
Sbjct: 455 WAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRV 514

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLA 657
           HEF++GD  HP+  EI+ +L  +T  +K  GY+PD   V  DV +E KE  V  HSEKLA
Sbjct: 515 HEFISGDLDHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLA 574

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           MAF L+++  G  IR+VKNLR+C DCH  +K +S + +RE++VRD  RFH F++G+CSC 
Sbjct: 575 MAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCG 634

Query: 718 DYW 720
           DYW
Sbjct: 635 DYW 637



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 175/382 (45%), Gaps = 33/382 (8%)

Query: 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
           ++S Y   G +   R  FD     D+V+WNA+ + Y   + FD     F  M  +G+ P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
            V I + LSAC   +++ +G+     +    I    I++ AL  MY   G    A  +F 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
            + ++DV++W+A+V  Y   G                                 REAL L
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHP-------------------------------REALGL 149

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
           FR+M    + P++ T+VS L ACA+LG L  G  +   ++   +++ + VG AL+++Y K
Sbjct: 150 FRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGK 209

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG +E A   F +++ K+   W+A+    A N     ++ +  +M    ++P+  T+V V
Sbjct: 210 CGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSV 269

Query: 456 LSACTHTGMVDEGRE-YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           L AC     + +GR  +     +  G+E +      +V++  + G+L  A ++   +   
Sbjct: 270 LDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIA-H 328

Query: 515 PNSIVWGALLGACRVHRDAEMA 536
            + ++W +L+     H   E A
Sbjct: 329 LDLVLWNSLIATNAQHGQTEKA 350



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 134/300 (44%), Gaps = 5/300 (1%)

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           +++ Y   G +   R+ FD+MP  D V W A+I  Y+    F      FR M    I P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407
           E  I   L+AC +   + +G  ++  I    ++ +  V  AL+ MY K G    A  VF 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 408 EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
            M  +D   W+AM+   A NGH  ++L +F QM    + P++VT V  L AC   G +  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA- 526
           G      +  Q GI+        +V+L G+ G +  A+E    + ++ N + W A+  A 
Sbjct: 181 GALMHQRVEAQ-GIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAWSAISAAY 238

Query: 527 CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL--RQMILDRGIKK 584
            R  R+ +   +  +  LE    N   +V + +  AA       R +  R  +L  G++ 
Sbjct: 239 ARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLES 298


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/564 (40%), Positives = 335/564 (59%), Gaps = 38/564 (6%)

Query: 163 CGEV-DMARGIFDVSYKDDVVTWNAMF---SGYKRVKQFDETRKLFGEMERKGV-LPTSV 217
           CG     AR +FD   +     +N++    S         +T  ++  M R G  LP S 
Sbjct: 73  CGAAPSYARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSF 132

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T+   L AC+ +  L  G++ H       + P+  ++  L ++YA C E           
Sbjct: 133 TLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEE----------- 181

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQM-PERDYVLWTAMIDGYLRVNRFREALTLF 336
                               V +AR  FD M  +++   W+AMI GY RV    EAL LF
Sbjct: 182 --------------------VALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLF 221

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
           REMQ +++ PDE T+VS+++ACA  GAL+LG WV  +ID+  +  D+ +  ALIDMY KC
Sbjct: 222 REMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKC 281

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G +E+A+ VF  M  +D   W+AMIVGLAI+G  + +L +FS+ML   + P+ VT++GVL
Sbjct: 282 GLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVL 341

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC H+G+V+EGR Y++ M  + GI+P+  +YGCMVDL  R+  L+EA   +  M + PN
Sbjct: 342 SACAHSGLVNEGRRYWSTMQ-ELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPN 400

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           S++W  LL A +     ++ + A+K++LEL+P N   YVLL N+YA+ ++WD    +R+ 
Sbjct: 401 SVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLYASNSQWDRVSYMRKK 460

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + +  +    GCS IE+NG +H+FV  D SHP+ KEI L L E+   +   G+ P  + V
Sbjct: 461 MKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIKEIRLLLREIADRVVRAGHKPWTAAV 520

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             DVGEE+KE A+ +HSE+LA+A+GL+ +     IR+VKNLR C DCH +AK+VS  YDR
Sbjct: 521 LHDVGEEEKEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVAKIVSKSYDR 580

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           E+IVRD+ RFH F  GSCSCKD+W
Sbjct: 581 EIIVRDRVRFHRFVEGSCSCKDFW 604



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 175/363 (48%), Gaps = 37/363 (10%)

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHK---NGVLIYLDMLKS-DVRPDNYTFPFLL 122
           YA  +F +IP P+   +N++I+  S         + VL+Y  ML++    P+++T  F L
Sbjct: 79  YARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 138

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD-DV 181
           K  +   A+  G++LH    + G + S +VQ  L++ Y  C EV +AR +FD    D ++
Sbjct: 139 KACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNL 198

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
             W+AM  GY RV   +E   LF EM+   V P  VT+V V+SACAK   LD+G+  H +
Sbjct: 199 AAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAF 258

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           +    I  +L L  AL DMYA CG +  A  +F  +  +D  +W+A++ G    G V++ 
Sbjct: 259 IDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEV- 317

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                         AL LF  M    +RP+  T + +L+ACA+ 
Sbjct: 318 ------------------------------ALKLFSRMLELKVRPNNVTFIGVLSACAHS 347

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAM 420
           G +  G    + + +  +K  +     ++D++C+   +++A      M +  +   W  +
Sbjct: 348 GLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTL 407

Query: 421 IVG 423
           +V 
Sbjct: 408 LVA 410



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 157/345 (45%), Gaps = 15/345 (4%)

Query: 11  STLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           S L     L   ++ C  +  L   +Q+HSQ  + GL  +P VQ  L+    ++  ++  
Sbjct: 126 SPLPNSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLY-AKCEEVAL 184

Query: 68  ACKVFRK-IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           A  VF   +   ++  W+ MI GYSR+      + ++ +M  +DV PD  T   ++    
Sbjct: 185 ARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACA 244

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           +  A++ G+ +H  + + G    + +  ALI  Y  CG ++ A+G+FD   + D   W+A
Sbjct: 245 KAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSA 304

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           M  G       +   KLF  M    V P +VT + VLSACA    ++ G+R    ++E  
Sbjct: 305 MIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELG 364

Query: 247 IVPNLILENALTDMYAACGEMGFALE-IFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
           I P++     + D++     +  A   + G     + + W  ++    N  + D+ +   
Sbjct: 365 IKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSAS 424

Query: 306 DQMPE------RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
            ++ E       +YVL + +   Y   +++     + ++M+ +N+
Sbjct: 425 KKLLELEPCNPENYVLLSNL---YASNSQWDRVSYMRKKMKENNV 466


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/639 (35%), Positives = 361/639 (56%), Gaps = 38/639 (5%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN ++  +SR  +    + ++   L S  RP++ TF   L    R   ++  + +     
Sbjct: 76  WNGLLSAHSRAGAPGAALRVF-RALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
             G+   VFV +AL+  Y  CG ++ A  +FD   + D V W+ M +G+    +  E   
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILENALTDMY 261
           ++  M   GV    V +V V+ AC    +  +G   H R ++ C                
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCM--------------- 239

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
                              DV++ T++V+ Y   G +D+A Q F  MP R+ V W+A+I 
Sbjct: 240 -----------------RMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALIS 282

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           G+ +  R  EAL LFRE+Q   ++P  + +VS L ACA++G L+LG+ +  +I + +++ 
Sbjct: 283 GFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILR-RLEW 341

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
              +G A++DMY KCG +E A+++F ++  +D   W A+I     +G G  +L +F ++ 
Sbjct: 342 QCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELN 401

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
              I PD  T+  +LSA +H+G+V+EG+ +F  M  + GIEP E HY C+VDLL R+G +
Sbjct: 402 ETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLV 461

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
            EA +++ +M  +P   +W  LL  C  ++  E+ E  AK+ILEL P++  V  L+ N+Y
Sbjct: 462 EEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLY 521

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMT 621
           AA  +WD  RE+R+++ D G KK PG S+IE+ G  H FV  D+SHPQ +EI   + ++ 
Sbjct: 522 AAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLN 581

Query: 622 SDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCV 681
           S+++ +GY+P    V+ D+   D+++ +  HSE+LA+AFGL+++ PG  + I+KNLR+C 
Sbjct: 582 SEMRKLGYVPRTEFVYHDL---DEDQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCG 638

Query: 682 DCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           DCH   K +S + DRE++VRD  RFHHFK G+CSC DYW
Sbjct: 639 DCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 165/367 (44%), Gaps = 36/367 (9%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           S  G M+ A +VF  +PR     W+TM+ G+         + +Y  M +  V  D     
Sbjct: 153 SRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMV 212

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV-SYK 178
            +++          G  +H  +L+      V    +L+S Y   G +D+A  +F +  Y+
Sbjct: 213 GVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYR 272

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           +DV TW+A+ SG+ +  +  E   LF E++  G+ P S  +V  L ACA +  L +GK  
Sbjct: 273 NDV-TWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSI 331

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H ++   ++    IL  A+ DMY+ CG +  A ++F  + ++D++ W AI+      G  
Sbjct: 332 HGFILR-RLEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGC- 389

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                                  G+       +AL LF+E+  + I+PD  T  S+L+A 
Sbjct: 390 -----------------------GH-------DALALFQELNETGIKPDHATFASLLSAL 419

Query: 359 ANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT- 416
           ++ G +E G+ W    I +  ++        ++D+  + G VE+A  +   M  +     
Sbjct: 420 SHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAI 479

Query: 417 WTAMIVG 423
           W  ++ G
Sbjct: 480 WVILLSG 486


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/488 (41%), Positives = 311/488 (63%), Gaps = 1/488 (0%)

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI-KNKDVISWTAIVTGY 292
           +G   H    +     +L + NALT  Y  CG++G    +F  + + +DV++W A++ GY
Sbjct: 148 LGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGY 207

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
           +  G V  AR+ F++MP RD V W+ ++ GY++      AL +FR+M    +R +E  +V
Sbjct: 208 VRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVV 267

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           + L+A A +G LE G +V   + +  +   + VG AL+DM+ KCG V  A+ VF  M R+
Sbjct: 268 TALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRR 327

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472
           D F W AMI GLA +G G  ++++F + L   + P ++T+VGVL+AC+  G+V EGR YF
Sbjct: 328 DVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYF 387

Query: 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
             M  ++ IEP   HYGCMVDLLGRAG ++EA+E+I+ M + P+ ++WG +L AC+ H  
Sbjct: 388 KLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNL 447

Query: 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE 592
            ++      +++EL+P ++  YVLL +IYA   +WD  RE+R+++  RG  K+ G S++E
Sbjct: 448 VDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLME 507

Query: 593 MNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQH 652
             G +H+F+ GD  H  + +IY  LD +   L   GY+PD+S V  D+G+E+K  A+  H
Sbjct: 508 AQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVH 567

Query: 653 SEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHG 712
           SE+LA+A+G I +  G  IRIVKNL++C DCH  +K+V+ V++RE+IVRD +RFHH K G
Sbjct: 568 SERLAIAYGFIVTEVGSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEG 627

Query: 713 SCSCKDYW 720
            CSC DYW
Sbjct: 628 KCSCLDYW 635



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 119/529 (22%), Positives = 206/529 (38%), Gaps = 124/529 (23%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCC-------SEKGDMKYACKVFRKIPRPSVCLW 83
            ++Q H++   LGL T   + + L             E     Y   +FR     S    
Sbjct: 40  HVQQAHARLAVLGLATASVLPHLLAALPRLPHPPPPDEASSSSYPLSLFRHSASASAFAS 99

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI------AVEF-GKE 136
           N ++    R+  H   + ++ ++ + ++    ++F FLL   +  +      A  F G  
Sbjct: 100 NHLL----RVLPHPLPLRLFPNLPRRNL----HSFTFLLASISNHLDATDHRASSFLGSH 151

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKRVK 195
           +H   +K G    ++V+NAL   Y +CG+V   R +FD +    DVVTWNA+ +GY R  
Sbjct: 152 VHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAG 211

Query: 196 QFDETRKLFGEME-------------------------------RKGVLPTSVTIVLVLS 224
                R++F EM                                 KGV      +V  LS
Sbjct: 212 MVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALS 271

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           A A++  L+ G+  H  V+   +  ++ +  AL DM++ CG +  A E+F  +  +DV +
Sbjct: 272 AAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFA 331

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           W A++ G  + G                                 ++A+ LF       +
Sbjct: 332 WNAMICGLASHGL-------------------------------GQDAVELFWRFLDEGL 360

Query: 345 RPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
            P + T V +L AC+  G +  G  + K  +DK +++ ++     ++D+  + G V +A 
Sbjct: 361 WPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAI 420

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
            +   M                                   I PD V +  VLSAC    
Sbjct: 421 ELIEGM----------------------------------HIAPDPVLWGTVLSACKTHN 446

Query: 464 MVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +VD G     +  I+  +EP ++ HY  +  +  +A   +E  EV K M
Sbjct: 447 LVDLGIT-VGNKLIE--LEPAHDGHYVLLASIYAKAKKWDEVREVRKLM 492


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/761 (32%), Positives = 395/761 (51%), Gaps = 79/761 (10%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H Q++K G L + +V   LV      + D +    +F ++   +V  W +++ GY+R
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTE-DFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              +   + +   M    V P+ +TF  +L     +  +E G ++H  ++K GF+ + FV
Sbjct: 183 NGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            NALI  Y     V  A  +FD     D VTWN M  GY  +  + E  ++F  M   GV
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI-----LENALTDMYAACGEM 267
             +       L  C++ ++L+  K+ H     C +V N       +  AL   Y+ C  +
Sbjct: 303 KLSRTVFCTALKLCSQQRELNFTKQLH-----CGVVKNGYEFAQDIRTALMVTYSKCSSV 357

Query: 268 GFALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYFDQMP----------------- 309
             A ++F       +V++WTA++ G++     + A   F QM                  
Sbjct: 358 DEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAG 417

Query: 310 ------------------ERDYVLWTAMIDGYLRVNRFRE-------------------- 331
                             E+   + TA++D Y++     E                    
Sbjct: 418 KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAML 477

Query: 332 -----------ALTLFREMQTSNIRPDEFTIVSILTACANLGA-LELGEWVKTYIDKNKV 379
                      A+ +F ++    ++P+E+T  S++ AC++  A +E G+ +     K+  
Sbjct: 478 TGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGK 537

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
            N + V +AL+ MY K G++E A++VF     +D  +W +MI G   +G   K+L++F  
Sbjct: 538 SNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQI 597

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M    +  D+VT++GVL+ACTH G+V+EG +YF  M   + I+    HY CMVDL  RAG
Sbjct: 598 MQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAG 657

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
             ++A+++I  MP   +  +W  LL ACRVHR+ E+ ++AA++++ L P++   YVLL N
Sbjct: 658 MFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSN 717

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           I+A    W+    +R+++ +R +KK  GCS IE+   +  F+AGD SHP +  +Y KL+E
Sbjct: 718 IHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEE 777

Query: 620 MTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
           ++  LK +GY PD + VF DV EE KE  + QHSE+LA+A+GLI+  PG  I+I KNLR+
Sbjct: 778 LSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRI 837

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C DCH + +L+S++ +R +IVRD  RFHHFK G CSC  YW
Sbjct: 838 CGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 132/561 (23%), Positives = 240/561 (42%), Gaps = 88/561 (15%)

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK-- 123
           +YA ++F + P   +  +N ++  +SR +  +  + ++ D+  S +  D  T    LK  
Sbjct: 55  RYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
           G   D  V  G+++HC  LK GF   V V  +L+  Y    + +  RGIFD     +VV+
Sbjct: 115 GVLFDQVV--GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVS 172

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           W ++ SGY R    DE   L  +M+ +GV P   T   VL A A    ++ G + H  + 
Sbjct: 173 WTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIV 232

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG------- 296
           +        + NAL  MY     +G A  +F ++  +D ++W  ++ GY   G       
Sbjct: 233 KNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQ 292

Query: 297 --------QVDMARQYF-------DQMPERDYV-----------------LWTAMIDGYL 324
                    V ++R  F        Q  E ++                  + TA++  Y 
Sbjct: 293 MFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYS 352

Query: 325 RVNRFREALTLFR--------------------------------EMQTSNIRPDEFTIV 352
           + +   EA  LF                                 +M    +RP+ FT  
Sbjct: 353 KCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYS 412

Query: 353 SILTA-CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
           ++L    ++L +    + +K Y +K        V  AL+D Y K G+V ++ RVF  +  
Sbjct: 413 TVLAGKPSSLLSQLHAQIIKAYYEKVPS-----VATALLDAYVKTGNVVESARVFYSIPA 467

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT-GMVDEGRE 470
           KD   W+AM+ GLA     +K++++F Q+++  + P+E T+  V++AC+ +   V+ G++
Sbjct: 468 KDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQ 527

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
             A   ++ G          ++ +  + G++  A +V      + + + W +++     H
Sbjct: 528 IHA-TAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEER-DIVSWNSMITGYGQH 585

Query: 531 RDA----EMAEMAAKQILELD 547
            DA    E+ ++   Q L LD
Sbjct: 586 GDAKKALEVFQIMQNQGLPLD 606



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 128/248 (51%), Gaps = 3/248 (1%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           L Q+H+Q IK      P+V   L+     + G++  + +VF  IP   +  W+ M+ G +
Sbjct: 423 LSQLHAQIIKAYYEKVPSVATALLD-AYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLA 481

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-VEFGKELHCHVLKFGFDSSV 150
           +    +  + +++ ++K  V+P+ YTF  ++   +   A VE GK++H   +K G  +++
Sbjct: 482 QTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNAL 541

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            V +AL++ Y   G ++ A  +F    + D+V+WN+M +GY +     +  ++F  M+ +
Sbjct: 542 CVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQ 601

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHR-YVKECKIVPNLILENALTDMYAACGEMGF 269
           G+    VT + VL+AC     ++ G++     +K+  I   +   + + D+Y+  G    
Sbjct: 602 GLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDK 661

Query: 270 ALEIFGNI 277
           A++I   +
Sbjct: 662 AMDIINGM 669


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/729 (35%), Positives = 381/729 (52%), Gaps = 72/729 (9%)

Query: 63  GDMKYACKVFRKIPRPS-VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
           GD++ A +VF ++P+ S V +W  ++ GY++    + GVL++  M    VRPD YT   +
Sbjct: 143 GDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCV 202

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           LK      ++E G+ +H  + K GF S   V NAL++ Y        A  +FD     DV
Sbjct: 203 LKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDV 262

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           ++WN+M SG      +D+  +LF  M  +G    S T++ VL ACA+L  L +G+  H Y
Sbjct: 263 ISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGY 322

Query: 242 -------------------VKEC-------KIVPNLILEN-----ALTDMYAACG----- 265
                                 C       KI  N++ +N     A+   Y   G     
Sbjct: 323 SVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKV 382

Query: 266 -----EMGF------------ALEIF-GN--IKNKDVISWTAIVTG-------------- 291
                EMG             AL  F GN  +K+   +   AI  G              
Sbjct: 383 AGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEM 442

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351
           Y+  G ++ A+  FD +  +D + W  +I GY R N   EA +LF EM    +RP+  T+
Sbjct: 443 YVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLL-QLRPNAVTM 501

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
             IL A A+L +LE G  +  Y  +     D FV NALIDMY KCG +  A+R+F  +  
Sbjct: 502 TCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSN 561

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           K+  +WT M+ G  ++G G  ++ +F QM  + I PD  ++  +L AC+H+G+ DEG  +
Sbjct: 562 KNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRF 621

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531
           F  M  +H IEP   HY CMVDLL   G+L EA E I +MP++P+S +W +LL  CR+HR
Sbjct: 622 FDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHR 681

Query: 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMI 591
           + ++AE  A+++ EL+P+N   YVLL NIYA   RW+  R+L+  I  RG+++  GCS I
Sbjct: 682 NVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWI 741

Query: 592 EMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQ 651
           E  G VH F+A +++HPQ   I   L+E+   ++  G+ P      +         A+  
Sbjct: 742 EAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHGEALCG 801

Query: 652 HSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKH 711
           HS KLA+AFG+++   G  IR+ KN R+C  CH  AK +S +  RE+I+RD  RFHHF+ 
Sbjct: 802 HSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRFHHFEQ 861

Query: 712 GSCSCKDYW 720
           G CSC+ YW
Sbjct: 862 GRCSCRGYW 870



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 209/484 (43%), Gaps = 42/484 (8%)

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH--CHVLKFGFDS--SVFVQNALIST 159
           L +L SD   D+ ++  +L+  +   ++E GK  H        G D   +V  Q  L+  
Sbjct: 81  LGLLGSD-GVDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQK-LVLM 138

Query: 160 YCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
           Y  CG+++ AR +FD +    DV  W A+ SGY +     E   LF +M   GV P + T
Sbjct: 139 YLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYT 198

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           I  VL   A L  ++ G+  H  +++        + NAL   YA       A+ +F  + 
Sbjct: 199 ISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMP 258

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
           ++DVISW ++++G  + G  D                               +A+ LF  
Sbjct: 259 HRDVISWNSMISGCTSNGLYD-------------------------------KAIELFVR 287

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M       D  T++S+L ACA L  L LG  V  Y  K    +   + N L+DMY  C D
Sbjct: 288 MWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSD 347

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
                ++FR M++K+  +WTAMI      G  DK   +F +M      PD       L A
Sbjct: 348 WRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHA 407

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
                ++  G+       I++G+E   A    ++++  + G++ EA ++I +  +  + I
Sbjct: 408 FAGNELLKHGKSVHG-YAIRNGMEKVLAVTNALMEMYVKCGNMEEA-KLIFDGVVSKDMI 465

Query: 519 VWGALLGA-CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
            W  L+G   R +   E   +  + +L+L P N      +    A+ +  +  RE+    
Sbjct: 466 SWNTLIGGYSRNNLANEAFSLFTEMLLQLRP-NAVTMTCILPAAASLSSLERGREMHAYA 524

Query: 578 LDRG 581
           L RG
Sbjct: 525 LRRG 528



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 33/334 (9%)

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
           +R+ +  +  +  G +   GV   S   VL L  C++++ L+ GKRAH  V+   +    
Sbjct: 69  QRLCRSGDLEEALGLLGSDGVDDRSYGAVLQL--CSEVRSLEGGKRAHFLVRASSL---- 122

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE- 310
                        G  G            D +    +V  Y+  G ++ AR+ FD+MP+ 
Sbjct: 123 -------------GRDGM-----------DNVLGQKLVLMYLKCGDLENARRVFDEMPQV 158

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
            D  +WTA++ GY +    RE + LFR+M    +RPD +TI  +L   A LG++E GE V
Sbjct: 159 SDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVV 218

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
              ++K    +   VGNAL+  Y K    + A  VF  M  +D  +W +MI G   NG  
Sbjct: 219 HGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLY 278

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           DK++++F +M       D  T + VL AC    ++  GR      +++ G     +    
Sbjct: 279 DKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGR-VVHGYSVKTGFISQTSLANV 337

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           ++D+           ++ +NM  K N + W A++
Sbjct: 338 LLDMYSNCSDWRSTNKIFRNMVQK-NVVSWTAMI 370


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/603 (37%), Positives = 330/603 (54%), Gaps = 42/603 (6%)

Query: 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
           L+  Y    +V  AR +FD   + +V+  N M   Y     + E  K+FG M    V P 
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
             T   VL AC+    + +G++ H    +  +   L + N L  MY  CG +  A  +  
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMA---------------------------------- 301
            +  +DV+SW ++V GY    + D A                                  
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 302 ---RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
              +  F +M ++  V W  MI  Y++     EA+ L+  M+     PD  +I S+L AC
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
            +  AL LG+ +  YI++ K+  ++ + NALIDMY KCG +EKA+ VF  M  +D  +WT
Sbjct: 320 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           AMI     +G G  ++ +FS++  + ++PD + +V  L+AC+H G+++EGR  F  MT  
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           + I P   H  CMVDLLGRAG + EA   I++M M+PN  VWGALLGACRVH D ++  +
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           AA ++ +L P+    YVLL NIYA   RW+    +R ++  +G+KK PG S +E+N ++H
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
            F+ GD+SHPQ+ EIY +LD +   +K +GY+PD      DV EEDKE  +  HSEKLA+
Sbjct: 560 TFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAI 619

Query: 659 AFGLISS-----GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
            F L+++         TIRI KNLR+C DCH  AKL+S +  RE+I+RD  RFH F+ G 
Sbjct: 620 VFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGV 679

Query: 714 CSC 716
           CSC
Sbjct: 680 CSC 682



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 239/498 (47%), Gaps = 48/498 (9%)

Query: 5   SSISPPSTLTQETP------LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC 58
           SS  P   L Q++P      L   ++T   +  L+ +HS+ I   L  N ++  KL+   
Sbjct: 25  SSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAY 84

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
            S K D+  A KVF +IP  +V + N MI+ Y     +  GV ++  M   +VRPD+YTF
Sbjct: 85  ASLK-DVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTF 143

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
           P +LK  +    +  G+++H    K G  S++FV N L+S Y  CG +  AR + D   +
Sbjct: 144 PCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSR 203

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK--------LK 230
            DVV+WN++  GY + ++FD+  ++  EME   +   + T+  +L A +         +K
Sbjct: 204 RDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVK 263

Query: 231 DL--DVGKRA--------HRYVKECKIVPNLILEN------------ALTDMYAACGE-- 266
           D+   +GK++          Y+K    V  + L +            ++T +  ACG+  
Sbjct: 264 DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTS 323

Query: 267 -MGFALEIFGNIKNKDVIS----WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
            +    +I G I+ K +I       A++  Y   G ++ AR  F+ M  RD V WTAMI 
Sbjct: 324 ALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMIS 383

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW-VKTYIDKNKVK 380
            Y    R  +A+ LF ++Q S + PD    V+ L AC++ G LE G    K   D  K+ 
Sbjct: 384 AYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 443

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
             +     ++D+  + G V++A R  ++M +  ++  W A++    +  H D  + + + 
Sbjct: 444 PRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRV--HSDTDIGLLAA 501

Query: 440 MLRASIIPDEVTYVGVLS 457
                + P++  Y  +LS
Sbjct: 502 DKLFQLAPEQSGYYVLLS 519



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
           +G  L+  Y    DV  A++VF E+  ++      MI     NG   + + +F  M   +
Sbjct: 76  LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           + PD  T+  VL AC+ +G +  GR+     T + G+         +V + G+ G L+EA
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSAT-KVGLSSTLFVGNGLVSMYGKCGFLSEA 194

Query: 505 LEVIKNMPMKPNSIVWGALL 524
             V+  M  + + + W +L+
Sbjct: 195 RLVLDEMSRR-DVVSWNSLV 213


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/611 (36%), Positives = 338/611 (55%), Gaps = 42/611 (6%)

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           ++SS+ V+  L+  Y    +V  AR +FD   + +V+  N M   Y     + E  ++FG
Sbjct: 73  YNSSLGVK--LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFG 130

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265
            M    V P   T   VL AC+   ++ +GK+ H    +  +   L + N L  MY  CG
Sbjct: 131 TMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCG 190

Query: 266 EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA------------------------ 301
            +  A  +   +  +DV+SW ++V GY    + D A                        
Sbjct: 191 FLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP 250

Query: 302 -------------RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
                        +  F +M ++  V W  MI  Y++     EA+ L+  M+     PD 
Sbjct: 251 AVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDA 310

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            +I S+L AC +  AL LG+ +  YI++ K+  ++ + NALIDMY KCG +++A+ VF  
Sbjct: 311 VSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFEN 370

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M  +D  +WTAMI     +G G  ++ +FS+M  + ++PD + +V  L+AC+H G+++EG
Sbjct: 371 MKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEG 430

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           R  F  MT  + I P   H  CMVDLLGRAG + EA + I+ MPM+PN  VWGALLGACR
Sbjct: 431 RSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACR 490

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
           VH + ++  +AA ++ +L P+    YVLL NIYA   RW+    +R ++  +G+KK PG 
Sbjct: 491 VHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGA 550

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERA 648
           S +E+N ++H F+ GD+SHPQ+ EIY +LD +   +K +GY+PD      DV EEDKE  
Sbjct: 551 SNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETH 610

Query: 649 VYQHSEKLAMAFGLISS---GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           +  HSEKLA+ F L+++        IRI KNLR+C DCH  AKL+S +  RE+I+RD  R
Sbjct: 611 LAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNR 670

Query: 706 FHHFKHGSCSC 716
           FH F+ G CSC
Sbjct: 671 FHVFRFGVCSC 681



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 233/474 (49%), Gaps = 42/474 (8%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           ++T   +  L+ +HS+ I   L  N ++  KL+    S K D+  A KVF +IP  +V +
Sbjct: 50  LDTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLK-DVATARKVFDEIPERNVII 108

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
            N MI+ Y     ++ G+ ++  M    V+PD+YTFP +LK  +    +  GK++H    
Sbjct: 109 INVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSAT 168

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           K G  S++FV N L+S Y  CG +  AR + D   + DVV+WN++ +GY + ++FD+  +
Sbjct: 169 KVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALE 228

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAK--------LKDL--DVGKRA--------HRYVKE 244
           +  EME   +   + T+  +L A +         +KD+   +GK++          Y+K 
Sbjct: 229 VCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKN 288

Query: 245 CKIVPNLILEN------------ALTDMYAACGE---MGFALEIFGNIKNKDVIS----W 285
              V  + L +            ++T +  ACG+   +    +I G I+ K +I      
Sbjct: 289 AMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 348

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            A++  Y   G +D AR  F+ M  RD V WTAMI  Y    R  +A+ LF +MQ S + 
Sbjct: 349 NALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLV 408

Query: 346 PDEFTIVSILTACANLGALELGEW-VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           PD    V+ L AC++ G LE G    K   D  K+   +     ++D+  + G V++A +
Sbjct: 409 PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYK 468

Query: 405 VFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
             +EM +  ++  W A++    ++ + D  L    ++ +  + P++  Y  +LS
Sbjct: 469 FIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQ--LAPEQSGYYVLLS 520



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 5/187 (2%)

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
           Q ++ +   F +  +L    +L  L     V + I    ++ +  +G  L+  Y    DV
Sbjct: 35  QKNSPKETAFMLGQVLDTYPDLKTLRT---VHSRIISEDLRYNSSLGVKLMRAYASLKDV 91

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
             A++VF E+  ++      MI     NG   + + +F  M    + PD  T+  VL AC
Sbjct: 92  ATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKAC 151

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           + +G +  G++     T + G+         +V + G+ G L+EA  V+  M  + + + 
Sbjct: 152 SCSGNIVIGKKIHGSAT-KVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRR-DVVS 209

Query: 520 WGALLGA 526
           W +L+  
Sbjct: 210 WNSLVAG 216


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/514 (42%), Positives = 326/514 (63%), Gaps = 20/514 (3%)

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILEN-ALTDMYAACGEMGF--ALEIFGNIKN 279
           L    K K LD  K+ H ++    I   LI     L+ +      + F  AL IF +I N
Sbjct: 13  LQLLEKCKTLDTLKQVHAHM----ITTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPN 68

Query: 280 KDVISWTAIVTGYIN-RGQVDMARQYFDQMPERDYV---------LWTAM-IDGYLRVNR 328
             +  +  +++   N +    +A   + ++     +         L+ A     +LR + 
Sbjct: 69  PTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHDI 128

Query: 329 F--REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
           F  +  LTLF EMQ S I+ +E T+V++++ACA LGAL  G W   Y+ K+ +K + FVG
Sbjct: 129 FLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVG 188

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
            ALIDMY KCG ++ A ++F ++  +D   + AMI G AI+G+G ++LD+F +M    + 
Sbjct: 189 TALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLA 248

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD+VT V  + +C+H G+V+EG + F  M   +G+EP   HYGC+VDLLGRAG L EA E
Sbjct: 249 PDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEE 308

Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
            + NMPMKPN+++W +LLGA RVH + E+ E+  K +++L+P+    YVLL N+YA+ NR
Sbjct: 309 RVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINR 368

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           WD+ + +R+++ D GI K PG S++E+ G +HEF+ GDK+HP++KEIYLKL+EM+  L  
Sbjct: 369 WDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHE 428

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
            G+ P   EV  D+ EE+KE A+  HSE+LA+AF LI+S     IRI+KNLR+C DCH  
Sbjct: 429 YGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTS 488

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +KL+S +Y+RE+IVRD+ RFHHFK G+CSC DYW
Sbjct: 489 SKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 160/379 (42%), Gaps = 57/379 (15%)

Query: 18  PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           P +  +E C+++  LKQ+H+  I  GL+ +    ++++    S      +A  +F  IP 
Sbjct: 11  PTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLI--SSTIVFTHALSIFNHIPN 68

Query: 78  PSVCLWNTMIKGYSRIDSHKN-GVLIYLDML-KSDVRPDNYTFPFLLKG------FTRDI 129
           P++ L+NT+I   + I  H +    +Y  +L  + ++P+ +TFP L K          DI
Sbjct: 69  PTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHDI 128

Query: 130 ------------------------------------AVEFGKELHCHVLKFGFDSSVFVQ 153
                                               A+  G   H +VLK     + FV 
Sbjct: 129 FLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVG 188

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
            ALI  Y  CG +D+A  +FD     D + +NAM  G+       +   LF +M  +G+ 
Sbjct: 189 TALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLA 248

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILENALTDMYAACGEMGFALE 272
           P  VT+V+ + +C+ +  ++ G      +KE   + P L     L D+    G +  A E
Sbjct: 249 PDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEE 308

Query: 273 IFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQM----PER--DYVLWTAMIDGYLR 325
              N+  K + + W +++      G +++       +    PE   +YVL + M   Y  
Sbjct: 309 RVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNM---YAS 365

Query: 326 VNRFREALTLFREMQTSNI 344
           +NR+ +   + + M+   I
Sbjct: 366 INRWDDVKRVRKLMKDHGI 384


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/719 (34%), Positives = 386/719 (53%), Gaps = 68/719 (9%)

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           KVF  + + +V  W +++ GY +     + + ++  M    V P+ +TF  +L       
Sbjct: 112 KVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQG 171

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            V+ G+ +H   +KFG  S+VFV N+L++ Y  CG V+ AR +F      D+V+WN + +
Sbjct: 172 MVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMA 231

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           G     +  E  +LF +      + T  T   V++ CA LK L + ++ H  V +     
Sbjct: 232 GLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHS 291

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQM 308
              +  AL D Y   G++  AL++F  +  +++V+SWTA++ G I  G + +A   F +M
Sbjct: 292 YGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRM 351

Query: 309 PE-------------------------------RDY----VLWTAMIDGYLRVNRFREAL 333
            E                                +Y     + TA++  Y ++    EAL
Sbjct: 352 REDGVAPNDLTYSTILTVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEAL 411

Query: 334 TLFR-------------------------------EMQTSNIRPDEFTIVSILTACANLG 362
           ++F+                               +M    ++P+EFTI S + ACA+  
Sbjct: 412 SIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPA 471

Query: 363 A-LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
           A ++LG        K++  + + V +AL+ MY + G +E AQ VF     +D  +W +M+
Sbjct: 472 AGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSML 531

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G A +G+  K+LD+F QM    I  D +T++ V+  C H G+V+EG++YF  M   +GI
Sbjct: 532 SGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGI 591

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541
            P   HY CMVDL  RAG L+E + +I+ MP      +W ALLGACRVH++ E+ ++AA+
Sbjct: 592 TPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAE 651

Query: 542 QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           ++L L+P + A YVLL NIY+A  +W    E+R+++  + ++K  GCS I++   VH F+
Sbjct: 652 KLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFI 711

Query: 602 AGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFG 661
           A DKSHP +++IY KL  MT+ LK  GY PD S V  DV E+ KE  +  HSE+LA+AFG
Sbjct: 712 ASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLALAFG 771

Query: 662 LISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           LI++ P   + I KNLR+  D H + K+VS + DRE+++RD  RFHHFK G CSC D+W
Sbjct: 772 LIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 149/295 (50%), Gaps = 12/295 (4%)

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           +K C  VP+ +L   L  +   CG             + D+   T++V  Y+N   V   
Sbjct: 62  IKICGSVPDRVLGKQLHALCVRCGH-----------DHGDIRVGTSLVDMYMNWHSVLDG 110

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
           R+ F+ M +R+ V WT+++ GY++     + ++LF  M+   + P+ FT  S+L+  A+ 
Sbjct: 111 RKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQ 170

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
           G ++LG+ V     K    + +FV N+L++MY KCG VE+A+ VF  M  +D  +W  ++
Sbjct: 171 GMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLM 230

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            GL +NG   ++L +F     +  +  E TY  V++ C +   +   R+  + + ++HG 
Sbjct: 231 AGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSV-LKHGF 289

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
                    ++D   +AG L++AL+V   M    N + W A++  C  + D  +A
Sbjct: 290 HSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLA 344



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 149/327 (45%), Gaps = 33/327 (10%)

Query: 133 FGKELHCHVLKFGFD-SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
            GK+LH   ++ G D   + V  +L+  Y     V   R +F+   K +VVTW ++ +GY
Sbjct: 73  LGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGY 132

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            +     +   LF  M  +GV P   T   VLS  A    +D+G+  H    +      +
Sbjct: 133 IQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTV 192

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + N+L +MYA CG +  A  +F  ++ +D++SW  ++ G +  G               
Sbjct: 193 FVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNG--------------- 237

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
                           R  EAL LF + ++S     E T  +++  CANL  L L   + 
Sbjct: 238 ----------------RDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLH 281

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIVGLAINGHG 430
           + + K+   +   V  AL+D Y K G ++KA  VF  M   ++  +WTAMI G   NG  
Sbjct: 282 SSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDI 341

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLS 457
             +  +FS+M    + P+++TY  +L+
Sbjct: 342 PLAAALFSRMREDGVAPNDLTYSTILT 368



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 192/459 (41%), Gaps = 50/459 (10%)

Query: 3   SNSSISPPSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCC 59
           S SSI    T+  E+   + I  C ++  L   +Q+HS  +K G  +   V   L+    
Sbjct: 249 SRSSI----TMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMD-AY 303

Query: 60  SEKGDMKYACKVFRKIP-RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           ++ G +  A  VF  +    +V  W  MI G  +         ++  M +  V P++ T+
Sbjct: 304 NKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTY 363

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
             +L          F  ++H  V+K  ++ +  V  AL+ +Y      + A  IF +  +
Sbjct: 364 STILT----VSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQ 419

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK-LKDLDVGKR 237
            DVV+W+AM + Y +    +     F +M   G+ P   TI   + ACA     +D+G++
Sbjct: 420 KDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQ 479

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H    + +    L + +AL  MYA  G +  A  +F    ++D++SW ++++GY   G 
Sbjct: 480 FHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGY 539

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
                                           ++AL +FR+M+   I  D  T +S++  
Sbjct: 540 S-------------------------------QKALDVFRQMEVEGIDMDGLTFLSVIMG 568

Query: 358 CANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKF 415
           CA+ G +E G ++    +    +   +     ++D+Y + G +++   +   M       
Sbjct: 569 CAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPT 628

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYV 453
            W A++    +  H +  L   +     S+ P D  TYV
Sbjct: 629 IWRALLGACRV--HKNVELGKLAAEKLLSLEPLDSATYV 665


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/565 (39%), Positives = 331/565 (58%), Gaps = 13/565 (2%)

Query: 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215
           +IS Y    + D+AR +FD   + D+ +WN M +GY R +     R LF  M  + +   
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI--- 57

Query: 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFG 275
            V+   +LS  A+   +D  +     +     + N I  N L   Y   G +  A  +F 
Sbjct: 58  -VSWNAMLSGYAQNGFVDEAREIFYKMP----LKNGISWNGLLAAYVQNGRIEDAKRLFE 112

Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335
           +  +  ++SW  ++ G++ +      R  FD MP+RD + W+AMI GY +     EAL  
Sbjct: 113 SKMDWTLVSWNCLMGGFVRK-----RRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHF 167

Query: 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395
           F EMQ    R +  +    L+ C+N+ ALELG  +   + K   +   +VGNAL+ MYCK
Sbjct: 168 FVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCK 227

Query: 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
           CG +++A+  F+E+L KD  +W  MI G A +G G+++L +F  M    I PD+ T V V
Sbjct: 228 CGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSV 287

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           L+AC+H G+VD+G EYF  M   +GI     HY CMVDLLGRAG L EA  ++KNMP +P
Sbjct: 288 LAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEP 347

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           ++  WGALLGA R+H + E+ E AA+ I E++P N  +Y+LL  +YAA  RW +  ++R 
Sbjct: 348 DAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRL 407

Query: 576 MILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
            + ++G+KK PG S +E+   +H F  GD SHP T +IY  L+EM   LK  GY+   + 
Sbjct: 408 EMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNL 467

Query: 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
           VF DV EE+K   +  HSEKLA+A+G++    G  IR++KNLR+C DCH   K +S +  
Sbjct: 468 VFHDVEEEEKVHMLKYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVG 527

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           R +I+RD  RFH+F+ GSCSC+D+W
Sbjct: 528 RLIILRDNHRFHYFEGGSCSCRDFW 552



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 177/384 (46%), Gaps = 53/384 (13%)

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM-LKSDVRPDNYTFPFLL 122
           D+K A  +F ++P   +  WN M+ GY++         I+  M LK+ +     ++  LL
Sbjct: 41  DLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGI-----SWNGLL 95

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE-VDMARGIFDVSYKDDV 181
             + ++  +E  K L        F+S   +   L+S  CL G  V   R +FD   + D 
Sbjct: 96  AAYVQNGRIEDAKRL--------FESK--MDWTLVSWNCLMGGFVRKRRNLFDNMPQRDS 145

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           ++W+AM +GY +    +E    F EM+R        +    LS C+ +  L++G++ H  
Sbjct: 146 ISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCR 205

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           + +        + NAL  MY  CG +  A + F  I  KDV+SW  ++ GY        A
Sbjct: 206 LVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGY--------A 257

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
           R  F +                       EALT+F  M+T+ IRPD+ T+VS+L AC++ 
Sbjct: 258 RHGFGE-----------------------EALTVFELMKTTGIRPDDATMVSVLAACSHA 294

Query: 362 GALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTA 419
           G ++ G E+  +      +   +     ++D+  + G +E+AQ + + M    D  TW A
Sbjct: 295 GLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGA 354

Query: 420 MIVGLAINGH---GDKSLDMFSQM 440
           ++    I+G+   G+K+  +  +M
Sbjct: 355 LLGASRIHGNTELGEKAAQIIFEM 378



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 141/297 (47%), Gaps = 5/297 (1%)

Query: 54  LVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP 113
           LV++ C   G ++    +F  +P+     W+ MI GYS+    +  +  +++M +   R 
Sbjct: 119 LVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERL 178

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           +  +F   L   +   A+E G++LHC ++K G+ +  +V NAL++ YC CG +D AR  F
Sbjct: 179 NRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAF 238

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233
               + DVV+WN M  GY R    +E   +F  M+  G+ P   T+V VL+AC+    +D
Sbjct: 239 QEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVD 298

Query: 234 VGKRA-HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTG 291
            G    +   ++  I   L+    + D+    G++  A  +  N+    D  +W A++  
Sbjct: 299 QGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGA 358

Query: 292 YINRGQVDM---ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
               G  ++   A Q   +M   +  ++  +   Y    R+ +A  +  EM+   ++
Sbjct: 359 SRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVK 415


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/626 (37%), Positives = 358/626 (57%), Gaps = 44/626 (7%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKV 71
           TLT++  L+S I+ C+S + LKQIH+Q     +L N   +   +     +  D+ YA  V
Sbjct: 31  TLTEK--LLSLIKQCKSKNLLKQIHAQ-----MLINSIPKPNFLLSKIIDLKDLAYASLV 83

Query: 72  FRKIPRPSVCLWNTMIKGYSRI-DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           F ++ +P++  +N M++G +     +   V +Y  +    ++ +N+T+PFL         
Sbjct: 84  FNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRG 143

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           +  GK  HC V K G D   +V ++LI+ Y  CGE+  AR +FD     D+V+WN+M SG
Sbjct: 144 LVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISG 203

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
           Y ++    E   LF EM  +G  P  +T+V VL AC  L DL +G+    +V E K+  N
Sbjct: 204 YSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVN 263

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
             + +AL DMY  CG               D+IS                AR+ FD MP 
Sbjct: 264 SYMGSALIDMYGKCG---------------DLIS----------------ARRVFDSMPN 292

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           +D V W A+I GY +     EA+ LF  M+ +   PD  T++ +L+AC+ +GAL+LG+WV
Sbjct: 293 KDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWV 352

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
           +T+  +  +++D++V +ALIDMY KCG ++ A RVF  M  K++ +W AMI  LA +G  
Sbjct: 353 ETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQA 412

Query: 431 DKSLDMFSQMLR--ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
            ++L +F +M +   ++ P+++T++GVLSAC H G+VDEGR+ F  M +  G+ P   HY
Sbjct: 413 QEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHY 472

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
            CMVDL  RAG L EA ++IK MP KP+ IV G+LLGAC+  R+A++ E   +  LE++ 
Sbjct: 473 SCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMEL 532

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
            N   YV+   IYA   RWD+  ++R ++   G+ KTPGCS I++   VHEF AGD  H 
Sbjct: 533 SNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEFHAGDSLHN 592

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDIS 634
            +  IY  L+E   ++K  GY+P+I 
Sbjct: 593 HSMNIYQLLNE---EMKREGYIPNIG 615


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/686 (34%), Positives = 358/686 (52%), Gaps = 33/686 (4%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           +H   +K G      V N L++F  ++   ++ A  VF ++P+  +  WN++I G +   
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFY-AKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNG 64

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
            +   V +++ M       D+ T   ++    +      G  +H + ++ G  S   + N
Sbjct: 65  LYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGN 124

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           AL+  Y  C +      IF    + +VV+W AM + Y R   FD+   LF EM  +G+ P
Sbjct: 125 ALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRP 184

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274
               I   L A A  + L  GK  H Y     I   L + NAL +MY  CG M       
Sbjct: 185 DVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYM------- 237

Query: 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334
                                   + AR  FD + ++D + W  +I GY R N   EA T
Sbjct: 238 ------------------------EEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFT 273

Query: 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
           LF EM    +RP+  T+  IL A A+L +LE G  +  Y  +     D FV NAL+DMY 
Sbjct: 274 LFNEMLL-QLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYV 332

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
           KCG +  A+R+F  +  K+  +WT MI G  ++G G  ++ +F QM  + I PD  ++  
Sbjct: 333 KCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSA 392

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           +L AC+H+G+ DEG  +F  M  +H IEP   HY CMVDLL   G+L EA E I+ MP++
Sbjct: 393 ILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIE 452

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
           P+S +W +LL  CR+HR+ ++AE  A+ + EL+P+N   YVLL NIYA   RW+  R+L+
Sbjct: 453 PDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLK 512

Query: 575 QMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDIS 634
             +  RG+++  GCS IE+ G  H F A +++HPQ   I   LD++   ++  G+ P   
Sbjct: 513 NKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKK 572

Query: 635 EVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVY 694
              +   +   + A+  HS KLA+AFG+++   G  IR+ KN R+C  CH  AK +S + 
Sbjct: 573 YALMGADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMC 632

Query: 695 DREVIVRDKTRFHHFKHGSCSCKDYW 720
            RE+I+RD  RFHHF+ G CSC+ YW
Sbjct: 633 GREIILRDSNRFHHFEEGRCSCRGYW 658


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/718 (33%), Positives = 384/718 (53%), Gaps = 41/718 (5%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLK-QIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           SS +P  TL     L    +T  S HQL  QI    +   LL  P +    +     + G
Sbjct: 10  SSRNPTKTLLS---LFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYI-----QLG 61

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
            +  A K F  I   ++  WNT++  +S+     + + ++  MLK     D++   F +K
Sbjct: 62  SLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVK 121

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
                   +  K  H   +K   +   +V  AL++ Y   G ++ A  +F+     + V 
Sbjct: 122 ACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVI 181

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY-V 242
           W  M  G+    +     +LF  M R G       +  ++ AC  +     GK  H   +
Sbjct: 182 WGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCI 241

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
           K+  I  N  L+ +L DMY  CG +                               D A 
Sbjct: 242 KKNFIDSNFFLQTSLVDMYMKCGFL-------------------------------DFAL 270

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
           + F+++  RD V+W+A+I G+ R  R  E++++FR+M   ++ P+  T  SI+ AC++LG
Sbjct: 271 KLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLG 330

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
           +L+ G  V  Y+ +N V+ D+    + IDMY KCG +  A RVF ++  K+ F+W+ MI 
Sbjct: 331 SLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMIN 390

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G  ++G   ++L++F +M   + +P+ VT+V VLSAC+H+G ++EG  +F  M+  +GI 
Sbjct: 391 GFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGIT 450

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P E HY CMVDLLGRAG ++EAL  I NMP +P +  WGALLGACR+HR AE+AE  AK+
Sbjct: 451 PVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKK 510

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           +L L+ D   VYV+L NIYA    W+  ++ R  + ++GI K  G + IE+   ++ F +
Sbjct: 511 LLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSS 570

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
            D+   +  +I    + +   ++ +GY+PD+  V  DV +E K+  +  HSEKLA+ FGL
Sbjct: 571 EDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGL 630

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++SG G+ IRI KN+R+C DCH  +K +S++  R++I+RD  RFHH + G CSC DYW
Sbjct: 631 LNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/656 (36%), Positives = 373/656 (56%), Gaps = 37/656 (5%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--GF 125
           A +VF ++       +NTMI GY +++  +  V ++L+ L    +PD  T   +L+  G 
Sbjct: 261 ARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENL-DQFKPDLLTVSSVLRACGH 319

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
            RD+++   K ++ ++LK GF     V+N LI  Y  CG++  AR +F+     D V+WN
Sbjct: 320 LRDLSL--AKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWN 377

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           ++ SGY +     E  KLF  M         +T ++++S   +L DL  GK  H    + 
Sbjct: 378 SIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS 437

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
            I  +L + NAL DMYA CGE+G +L+IF +                             
Sbjct: 438 GICIDLSVSNALIDMYAKCGEVGDSLKIFSS----------------------------- 468

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
             M   D V W  +I   +R   F   L +  +M+ S + PD  T +  L  CA+L A  
Sbjct: 469 --MGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKR 526

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
           LG+ +   + +   ++++ +GNALI+MY KCG +E + RVF  M R+D  TWT MI    
Sbjct: 527 LGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYG 586

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485
           + G G+K+L+ F+ M ++ I+PD V ++ ++ AC+H+G+VDEG   F  M   + I+P  
Sbjct: 587 MYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMI 646

Query: 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
            HY C+VDLL R+  +++A E I+ MP+KP++ +W ++L ACR   D E AE  +++I+E
Sbjct: 647 EHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIE 706

Query: 546 LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK 605
           L+PD+    +L  N YAA  +WD    +R+ + D+ I K PG S IE+   VH F +GD 
Sbjct: 707 LNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDD 766

Query: 606 SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQHSEKLAMAFGLIS 664
           S PQ++ IY  L+ + S +   GY+PD  EV  ++  EE+K R +  HSE+LA+AFGL++
Sbjct: 767 SAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLN 826

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + PG  ++++KNLR+C DCH + KL+S +  RE++VRD  RFH FK G+CSCKD W
Sbjct: 827 TEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/513 (26%), Positives = 249/513 (48%), Gaps = 37/513 (7%)

Query: 17  TPLIS-PIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           +P IS  + +  ++++L++IH+  I LGL ++     KL+    S   +   +  VFR++
Sbjct: 7   SPFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLID-KYSHFREPASSLSVFRRV 65

Query: 76  -PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
            P  +V LWN++I+ +S+       +  Y  + +S V PD YTFP ++K        E G
Sbjct: 66  SPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMG 125

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
             ++  +L  GF+S +FV NAL+  Y   G +  AR +FD     D+V+WN++ SGY   
Sbjct: 126 DLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSH 185

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
             ++E  +++ E++   ++P S T+  VL A   L  +  G+  H +  +  +   +++ 
Sbjct: 186 GYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVN 245

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N L  MY        A  +F  +  +D +S                              
Sbjct: 246 NGLVAMYLKFRRPTDARRVFDEMDVRDSVS------------------------------ 275

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            +  MI GYL++    E++ +F E      +PD  T+ S+L AC +L  L L +++  Y+
Sbjct: 276 -YNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYM 333

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K     +  V N LID+Y KCGD+  A+ VF  M  KD  +W ++I G   +G   +++
Sbjct: 334 LKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAM 393

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
            +F  M+      D +TY+ ++S  T    +  G+   ++  I+ GI  + +    ++D+
Sbjct: 394 KLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSN-GIKSGICIDLSVSNALIDM 452

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
             + G + ++L++  +M    +++ W  ++ AC
Sbjct: 453 YAKCGEVGDSLKIFSSMGTG-DTVTWNTVISAC 484



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 137/519 (26%), Positives = 241/519 (46%), Gaps = 38/519 (7%)

Query: 21  SPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S I+ C  +   +    ++ Q + +G  ++  V N LV    S  G +  A +VF ++P 
Sbjct: 111 SVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMY-SRMGLLTRARQVFDEMPV 169

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
             +  WN++I GYS    ++  + IY ++  S + PD++T   +L  F   + V+ G+ L
Sbjct: 170 RDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGL 229

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H   LK G +S V V N L++ Y        AR +FD     D V++N M  GY +++  
Sbjct: 230 HGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMV 289

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           +E+ ++F E       P  +T+  VL AC  L+DL + K  + Y+ +   V    + N L
Sbjct: 290 EESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNIL 348

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            D+YA CG+M                     +T          AR  F+ M  +D V W 
Sbjct: 349 IDVYAKCGDM---------------------IT----------ARDVFNSMECKDTVSWN 377

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
           ++I GY++     EA+ LF+ M     + D  T + +++    L  L+ G+ + +   K+
Sbjct: 378 SIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS 437

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
            +  D+ V NALIDMY KCG+V  + ++F  M   D  TW  +I      G     L + 
Sbjct: 438 GICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVT 497

Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
           +QM ++ ++PD  T++  L  C        G+E    + ++ G E        ++++  +
Sbjct: 498 TQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCL-LRFGYESELQIGNALIEMYSK 556

Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
            G L  +  V + M  + + + W  ++ A  ++ + E A
Sbjct: 557 CGCLENSSRVFERMSRR-DVVTWTGMIYAYGMYGEGEKA 594



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 184/401 (45%), Gaps = 18/401 (4%)

Query: 21  SPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S +  C  +  L   K I++  +K G +   TV+N L+    ++ GDM  A  VF  +  
Sbjct: 312 SVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILID-VYAKCGDMITARDVFNSMEC 370

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
                WN++I GY +       + ++  M+  + + D+ T+  L+   TR   ++FGK L
Sbjct: 371 KDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGL 430

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H + +K G    + V NALI  Y  CGEV  +  IF      D VTWN + S   R   F
Sbjct: 431 HSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDF 490

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
               ++  +M +  V+P   T ++ L  CA L    +GK  H  +        L + NAL
Sbjct: 491 ATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNAL 550

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER----DY 313
            +MY+ CG +  +  +F  +  +DV++WT ++  Y   G+ + A + F  M +     D 
Sbjct: 551 IEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDS 610

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTS-NIRP--DEFT-IVSILTACANLGALELGEW 369
           V++ A+I          E L  F +M+T   I P  + +  +V +L+    +   E    
Sbjct: 611 VVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAE---- 666

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
              +I    +K D  +  +++      GD+E A+RV R ++
Sbjct: 667 --EFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRII 705


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/678 (35%), Positives = 377/678 (55%), Gaps = 42/678 (6%)

Query: 17  TPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLV------------------ 55
           +P    +++C   +S    ++IH++ IK    +   +QN+LV                  
Sbjct: 20  SPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDR 79

Query: 56  -----TFC-------CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIY 103
                TF         ++ G +  A  VF+ +P P  C WN M+ G+++ D  +  +  +
Sbjct: 80  MPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFF 139

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
           +DM   D   + Y+F   L        +  G ++H  + K  +   V++ +AL+  Y  C
Sbjct: 140 VDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKC 199

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G V  A+  FD     ++V+WN++ + Y++     +  ++F  M   GV P  +T+  V+
Sbjct: 200 GVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVV 259

Query: 224 SACAKLKDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           SACA    +  G + H R VK  K   +L+L NAL DMYA C  +  A  +F  +  ++V
Sbjct: 260 SACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNV 319

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +S T++V GY     V  AR  F  M E++ V W A+I GY +     EA+ LF  ++  
Sbjct: 320 VSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRE 379

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV------KNDIFVGNALIDMYCKC 396
           +I P  +T  ++L ACANL  L+LG    T I K+        ++DIFVGN+LIDMY KC
Sbjct: 380 SIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKC 439

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G VE    VF  M+ +D  +W AMIVG A NG+G  +L++F +ML +   PD VT +GVL
Sbjct: 440 GMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVL 499

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+H G+V+EGR YF  M  + G+ P + H+ CMVDLLGRAG L+EA ++I+ MPM+P+
Sbjct: 500 SACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPD 559

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           ++VWG+LL AC+VH + E+ +  A++++E+DP N   YVLL N+YA   RW +   +R+ 
Sbjct: 560 NVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQ 619

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           +  RG+ K PGCS IE+   VH F+  DK HP  K+I+L L  +T  +K+ GY+P+  + 
Sbjct: 620 MRQRGVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQMKWAGYVPEADDD 679

Query: 637 FLDVGEEDKERAVYQHSE 654
             ++ EE+ +  +  H E
Sbjct: 680 --EICEEESDSELVLHFE 695



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 159/315 (50%), Gaps = 4/315 (1%)

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
            +KL GE+        S     +L +C + K     +R H  + + +    + ++N L D
Sbjct: 7   VQKLVGEL----CFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVD 62

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
            Y  CG    A ++F  +  ++  S+ A+++     G++D A   F  MPE D   W AM
Sbjct: 63  AYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAM 122

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           + G+ + +RF EAL  F +M + +   +E++  S L+ACA L  L +G  +   I K++ 
Sbjct: 123 VSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRY 182

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
             D+++G+AL+DMY KCG V  AQR F  M  ++  +W ++I     NG   K+L++F  
Sbjct: 183 LLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVM 242

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M+   + PDE+T   V+SAC     + EG +  A +  +     +      +VD+  +  
Sbjct: 243 MMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCR 302

Query: 500 HLNEALEVIKNMPMK 514
            +NEA  V   MP++
Sbjct: 303 RVNEARLVFDRMPLR 317



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 213/480 (44%), Gaps = 102/480 (21%)

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           D+  F  LL    R  +    + +H  ++K  F S +F+QN L+  Y  CG  + AR +F
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 174 D-------VSY------------------------KDDVVTWNAMFSGYKRVKQFDETRK 202
           D        SY                        + D  +WNAM SG+ +  +F+E  +
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
            F +M  +  +    +    LSACA L DL++G + H  + + + + ++ + +AL DMY+
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYS 197

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG +  A   F  +  ++++SW +++T Y   G                          
Sbjct: 198 KCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAG----------------------- 234

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT-YIDKNKVKN 381
                   +AL +F  M  + + PDE T+ S+++ACA+  A+  G  +    + ++K +N
Sbjct: 235 --------KALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRN 286

Query: 382 DIFVGNALIDMYCKC-------------------------------GDVEKAQRVFREML 410
           D+ +GNAL+DMY KC                                 V+ A+ +F  M+
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMM 346

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            K+  +W A+I G   NG  ++++ +F  + R SI P   T+  +L+AC +   +  GR+
Sbjct: 347 EKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406

Query: 471 YFADMTIQHGI-----EPNEAHYG-CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
               + ++HG      E ++   G  ++D+  + G + +   V + M ++ + + W A++
Sbjct: 407 AHTQI-LKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERM-VERDVVSWNAMI 464


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/640 (35%), Positives = 352/640 (55%), Gaps = 41/640 (6%)

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPF----------LLKGFTRDIAVEFGKELHCH 140
           S   S    + ++    + ++ P  Y+  F          +L+   R+ AV   K  H  
Sbjct: 29  SNTSSLSRNISVFASYEQEELSPGRYSDEFNVVQASDFIEILQLCARNGAVMEAKACHGK 88

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
            ++      V + N LI+ Y  CG V++AR +FD   +  +V+WN M   Y R +   E 
Sbjct: 89  TMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEA 148

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             +F EM  +G   +  TI  VLSAC    D    K+ H    +  +  NL +  AL D+
Sbjct: 149 LDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDL 208

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           YA CG                                ++ A Q F+ M ++  V W++M+
Sbjct: 209 YAKCG-------------------------------MINDAVQVFESMQDKSSVTWSSMV 237

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            GY++   + EAL L+R  Q  ++  ++FT+ S++ AC+NL AL  G+ +   I K+   
Sbjct: 238 AGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFG 297

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
           +++FV ++ +DMY KCG + ++  +F E+  K+   W  +I G A +    + + +F +M
Sbjct: 298 SNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKM 357

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
            +  + P+EVT+  +LS C HTG+V+EGR +F  M   +G+ PN  HY CMVD+LGRAG 
Sbjct: 358 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGL 417

Query: 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
           L+EA E+IK++P +P + +WG+LL +CRV ++ E+AE+AAK++ EL+P+N   +VLL NI
Sbjct: 418 LSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNI 477

Query: 561 YAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEM 620
           YAA  +W+   + R+++ D  +KK  G S I++   VH F  G+ SHP+ +EI   LD +
Sbjct: 478 YAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNL 537

Query: 621 TSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMC 680
             +L+  GY P +     DV    KE  + QHSEKLA+ FGL+    G T+RI+KNLR+C
Sbjct: 538 VIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRIC 597

Query: 681 VDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           VDCH   K  SM   R +IVRD  RFHHF  G CSC ++W
Sbjct: 598 VDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 188/416 (45%), Gaps = 40/416 (9%)

Query: 12  TLTQETPLISPIETCE---SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
            + Q +  I  ++ C    ++ + K  H +T+++ L  + T+ N L+    S+ G ++ A
Sbjct: 59  NVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLIN-AYSKCGFVELA 117

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRD 128
            +VF  +   S+  WNTMI  Y+R       + I+ +M     +   +T   +L     +
Sbjct: 118 RQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGAN 177

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
                 K+LHC  +K   D +++V  AL+  Y  CG ++ A  +F+       VTW++M 
Sbjct: 178 CDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMV 237

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           +GY + K ++E   L+   +R  +     T+  V+ AC+ L  L  GK+ H  +++    
Sbjct: 238 AGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFG 297

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
            N+ + ++  DMYA CG +  +  IF  ++ K++  W  I++G+                
Sbjct: 298 SNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHA------------ 345

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG- 367
                              R +E + LF +MQ   + P+E T  S+L+ C + G +E G 
Sbjct: 346 -------------------RPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGR 386

Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
            + K       +  ++   + ++D+  + G + +A     E+++   F  TA I G
Sbjct: 387 RFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAY----ELIKSIPFEPTASIWG 438



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 162/343 (47%), Gaps = 10/343 (2%)

Query: 11  STLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACK 70
           S  T  + L +    C+++ + K++H  ++K  L  N  V   L+    ++ G +  A +
Sbjct: 163 SEFTISSVLSACGANCDAL-ECKKLHCLSMKTSLDLNLYVGTALLDLY-AKCGMINDAVQ 220

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           VF  +   S   W++M+ GY +  +++  +L+Y    +  +  + +T   ++   +   A
Sbjct: 221 VFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAA 280

Query: 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSG 190
           +  GK++H  + K GF S+VFV ++ +  Y  CG +  +  IF    + ++  WN + SG
Sbjct: 281 LIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISG 340

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVP 249
           + +  +  E   LF +M++ G+ P  VT   +LS C     ++ G+R  + ++    + P
Sbjct: 341 FAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSP 400

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTGYINRGQVDM----ARQY 304
           N++  + + D+    G +  A E+  +I  +   S W +++        +++    A++ 
Sbjct: 401 NVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKL 460

Query: 305 FDQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           F+  PE   ++VL + +     +     ++  L R+     +R
Sbjct: 461 FELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVR 503


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/587 (37%), Positives = 339/587 (57%), Gaps = 31/587 (5%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK  H  +L  G  + +   N LI+ Y  CG VD AR +FD      +V+WN M     +
Sbjct: 83  GKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQ 142

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
             + +E   L  +M+R+G   +  TI  VL ACA    L   +  H +  +  +  N+ +
Sbjct: 143 NGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFV 202

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             AL D+YA CG M            KD +                     F+ MP+R  
Sbjct: 203 ATALLDVYAKCGLM------------KDAVC-------------------VFESMPDRSV 231

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           V W++M  GY++   + +AL LFR+   + ++ D+F + S++ ACA L A+  G+ V   
Sbjct: 232 VTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNAL 291

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           + K+   ++IFV ++LIDMY KCG +E++ +VFR++ +++   W AMI GL+ +    + 
Sbjct: 292 LSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEV 351

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           + +F +M +  + P++VT+V VLSAC H G+V +G++YF  MT +H + PN  HY CMVD
Sbjct: 352 MILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVD 411

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
            L RAG + EA ++I  +P   ++ +WG+LL +CR H + E+AE+AAK++ +++P N   
Sbjct: 412 TLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGN 471

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           Y+LL N+YAA  +WD   ++R+++ +  +KK  G S IE+   VH F+ G+++HP+  EI
Sbjct: 472 YLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEI 531

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
           Y KL+E+  +L+ +GY  +       VGE  K+  +  HSEKLA   GL+   P   IRI
Sbjct: 532 YSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRI 591

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +KNLR+C DCH   KL S  + R+VIVRD  RFHHFK+G CSC D+W
Sbjct: 592 MKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 184/401 (45%), Gaps = 34/401 (8%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           Q K  H+Q + +GL T+    N L+    S+ G + +A +VF ++P  S+  WNTMI   
Sbjct: 82  QGKACHAQILLMGLKTDLLTSNILINMY-SKCGSVDFARQVFDEMPSRSLVSWNTMIGSL 140

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           ++       + + L M +       +T   +L       A+   + LH   +K   D +V
Sbjct: 141 TQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNV 200

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
           FV  AL+  Y  CG +  A  +F+      VVTW++M +GY + + +++   LF +    
Sbjct: 201 FVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWET 260

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G+      +  V+ ACA L  +  GK+ +  + +     N+ + ++L DMYA CG +  +
Sbjct: 261 GLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEES 320

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            ++F +++ ++V+ W                                AMI G  R  R  
Sbjct: 321 YKVFRDVEKRNVVLW-------------------------------NAMISGLSRHARSL 349

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNAL 389
           E + LF +MQ   + P++ T VS+L+AC ++G ++ G+ +      ++ +  ++F  + +
Sbjct: 350 EVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCM 409

Query: 390 IDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           +D   + G + +A  +  ++        W +++     +G+
Sbjct: 410 VDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGN 450



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 170/348 (48%), Gaps = 13/348 (3%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           +P S  T  + L +    C ++ + + +H+  IK  +  N  V   L+    ++ G MK 
Sbjct: 161 TPFSEFTISSVLCACAAKC-ALSECQLLHAFAIKAAMDLNVFVATALLDVY-AKCGLMKD 218

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A  VF  +P  SV  W++M  GY + + ++  + ++    ++ ++ D +    ++     
Sbjct: 219 AVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAG 278

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             A+  GK+++  + K GF S++FV ++LI  Y  CG ++ +  +F    K +VV WNAM
Sbjct: 279 LAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAM 338

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECK 246
            SG  R  +  E   LF +M++ G+ P  VT V VLSAC  +  +  G++    + KE  
Sbjct: 339 ISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHH 398

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDM----A 301
           + PN+   + + D  +  G++  A ++   +  N     W +++      G +++    A
Sbjct: 399 LAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAA 458

Query: 302 RQYFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           ++ FD  P    +Y+L + M   Y    ++ E   + + ++ S+++ +
Sbjct: 459 KKLFDIEPHNSGNYLLLSNM---YAANGKWDEVAKMRKLLKESDVKKE 503



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           IL  CA    L  G+     I    +K D+   N LI+MY KCG V+ A++VF EM  + 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +W  MI  L  NG  +++LD+  QM R      E T   VL AC     + E +   A
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
              I+  ++ N      ++D+  + G + +A+ V ++MP + + + W ++
Sbjct: 190 -FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDR-SVVTWSSM 237


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/747 (32%), Positives = 387/747 (51%), Gaps = 107/747 (14%)

Query: 27  ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
           +S+   K++HS      +  +  +  KLV+   +  GD+K   +VF  + + +V LWN M
Sbjct: 113 KSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYAT-CGDLKEGRRVFDTMEKKNVYLWNFM 171

Query: 87  IKGYSRIDSHKNGVLIYLDMLKSDV---RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143
           +  Y++I   K  + ++  M++  +   RP++                            
Sbjct: 172 VSEYAKIGDFKESICLFKIMVEKGIEGKRPES---------------------------- 203

Query: 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL 203
                                    A  +FD     DV++WN+M SGY      +   ++
Sbjct: 204 -------------------------ASELFDKLCDRDVISWNSMISGYVSNGLTERGLEI 238

Query: 204 FGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA 263
           + +M   G+     TI+ VL  CA    L +GK  H    +      +   N L DMY+ 
Sbjct: 239 YKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSK 298

Query: 264 CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER------------ 311
           CG++  AL +F  +  ++V+SWT+++ GY   G+ D A +   QM +             
Sbjct: 299 CGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSI 358

Query: 312 -----------------DYV----------LWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                            DY+          +  A++D Y +      A ++F  M   +I
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDI 418

Query: 345 ----------RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394
                     +PD  T+  IL ACA+L ALE G+ +  YI +N   +D  V NAL+D+Y 
Sbjct: 419 ISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYV 478

Query: 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVG 454
           KCG +  A+ +F  +  KD  +WT MI G  ++G+G++++  F++M  A I PDEV+++ 
Sbjct: 479 KCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFIS 538

Query: 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
           +L AC+H+G++++G  +F  M     IEP   HY CMVDLL R G+L++A E I+ +P+ 
Sbjct: 539 ILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIA 598

Query: 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574
           P++ +WGALL  CR++ D E+AE  A+++ EL+P+N   YVLL NIYA   +W+  + +R
Sbjct: 599 PDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMR 658

Query: 575 QMILDRGIKKTPGCSMIEMNGVVHEFVAGDK-SHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           + I  +G++K PGCS IE+ G V+ FV+G+  SHP +K+I   L +M   +K  GY P  
Sbjct: 659 EKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKT 718

Query: 634 SEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMV 693
               ++  E  KE A+  HSEKLAMAFGL++  P  T+R+ KNLR+C DCH MAK +S  
Sbjct: 719 KYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKE 778

Query: 694 YDREVIVRDKTRFHHFKHGSCSCKDYW 720
             RE+++RD  RFHHFK+G CSC+ +W
Sbjct: 779 TRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 158/324 (48%), Gaps = 22/324 (6%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           VL  CA  K L  GK+ H  +K   +  + +L   L  +YA CG++     +F  ++ K+
Sbjct: 105 VLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKN 164

Query: 282 VISWTAIVTGYINRG--------------------QVDMARQYFDQMPERDYVLWTAMID 321
           V  W  +V+ Y   G                    + + A + FD++ +RD + W +MI 
Sbjct: 165 VYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMIS 224

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           GY+        L ++++M    I  D  TI+S+L  CAN G L LG+ V +   K+  + 
Sbjct: 225 GYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFER 284

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
            I   N L+DMY KCGD++ A RVF +M  ++  +WT+MI G   +G  D ++ +  QM 
Sbjct: 285 RINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQME 344

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
           +  +  D V    +L AC  +G +D G++   D    + +E N      ++D+  + G +
Sbjct: 345 KEGVKLDVVATTSILHACARSGSLDNGKDVH-DYIKANNMESNLFVCNALMDMYTKCGSM 403

Query: 502 NEALEVIKNMPMKPNSIVWGALLG 525
           + A  V   M +K + I W  ++G
Sbjct: 404 DGANSVFSTMVVK-DIISWNTMIG 426



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 106/268 (39%), Gaps = 55/268 (20%)

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           +R    + A I  + ++     A+ L    Q S +    ++  S+L  CA   +L  G+ 
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTYS--SVLQLCAGSKSLTDGKK 120

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK----------------- 412
           V + I  N V  D  +G  L+ +Y  CGD+++ +RVF  M +K                 
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 413 ----------------------------------DKFTWTAMIVGLAINGHGDKSLDMFS 438
                                             D  +W +MI G   NG  ++ L+++ 
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYK 240

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           QM+   I  D  T + VL  C ++G +  G+   + + I+   E        ++D+  + 
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS-LAIKSTFERRINFSNTLLDMYSKC 299

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGA 526
           G L+ AL V + M  + N + W +++  
Sbjct: 300 GDLDGALRVFEKMGER-NVVSWTSMIAG 326


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/616 (37%), Positives = 348/616 (56%), Gaps = 37/616 (6%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           M ++ +  D  T+  L+K      AV+  + +H HV   G++   F+ N LI+ Y   G 
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           +D AR +FD     +VV+W  M S Y       +       M R+GV P   T   VL A
Sbjct: 67  LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA 126

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           C  L +L   ++ H  + +  +  ++ + +AL D Y+  GE   AL +            
Sbjct: 127 CDGLLNL---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNV------------ 171

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                              F++M   D V+W ++I G+ + +   E L L++ M+ ++  
Sbjct: 172 -------------------FNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFV 212

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
            D+ T+ S+L AC  L  LELG  V  ++   K   D+ + NAL+DMYCKCG +E A  +
Sbjct: 213 ADQSTLTSVLRACTGLALLELGRQVHVHV--LKYDQDLILNNALLDMYCKCGSLEDANLL 270

Query: 406 F-REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           F R M  KD  +W+ MI GLA NG    +L +F  M      P+ +T +GVL AC+H G+
Sbjct: 271 FTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGL 330

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           V++G  YF  M    GI+P   HYGC++DLLGRAG L+EA+++I  M  +P+++ W  LL
Sbjct: 331 VNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILL 390

Query: 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
           GACRVH++ ++A  AAK+IL+LDP +   Y+LL NIYA   +W++  E+R+ +  RG+KK
Sbjct: 391 GACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKK 450

Query: 585 TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED 644
            PGCS IE++  VH F+ GD SHP+ +EI  +L ++   L  +GY+PD + V  D+  E 
Sbjct: 451 DPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQ 510

Query: 645 KERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKT 704
            E ++  HSEKLA+ FGL+S     TI I KNLR+C DCH  AKLVS + +R +++RD  
Sbjct: 511 MEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPI 570

Query: 705 RFHHFKHGSCSCKDYW 720
           R+HHF+ G CSC DYW
Sbjct: 571 RYHHFRGGVCSCGDYW 586



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 202/432 (46%), Gaps = 47/432 (10%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           ++ Q + +H      G      + N L+     + G +  A  +F ++P  +V  W TMI
Sbjct: 31  AVQQARLVHEHVFSNGYEPKTFLINTLINMYV-KFGLLDEARNLFDEMPDRNVVSWTTMI 89

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
             YS  + +   +   + ML+  VRP+ YT+  +L+     + +   ++LH  +LK G +
Sbjct: 90  SAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLE 146

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
           S VFV++ALI TY   GE   A  +F+     D+V WN++  G+ +    DET  L+  M
Sbjct: 147 SDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRM 206

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
           +R   +    T+  VL AC  L  L++G++ H +V   K   +LIL NAL DMY  CG +
Sbjct: 207 KRADFVADQSTLTSVLRACTGLALLELGRQVHVHV--LKYDQDLILNNALLDMYCKCGSL 264

Query: 268 GFALEIFGN-IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
             A  +F   +  KDVISW+ ++ G    G                   ++A        
Sbjct: 265 EDANLLFTRMMTEKDVISWSTMIAGLAQNG-------------------FSA-------- 297

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
               +AL LF  M++   +P+  TI+ +L AC++ G +  G +   Y    K    I  G
Sbjct: 298 ----DALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWY---YFQSMKEHFGIDPG 350

Query: 387 ----NALIDMYCKCGDVEKAQRVFREMLRK-DKFTWTAMIVGLAINGHGDKSLDMFSQML 441
                 +ID+  + G +++A ++  EM  + D  TW  ++    ++ + D ++    ++L
Sbjct: 351 REHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEIL 410

Query: 442 RASIIPDEVTYV 453
           +     D  TY+
Sbjct: 411 KLD-PADAGTYI 421



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 167/336 (49%), Gaps = 15/336 (4%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S +  C+ +  L+Q+H   +K+GL ++  V++ L+    S+ G+   A  VF ++    +
Sbjct: 122 SVLRACDGLLNLRQLHGSILKVGLESDVFVRSALID-TYSKLGEQHDALNVFNEMITGDL 180

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            +WN++I G+++       + +Y  M ++D   D  T   +L+  T    +E G+++H H
Sbjct: 181 VVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVH 240

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGYKRVKQFDE 199
           VLK  +D  + + NAL+  YC CG ++ A  +F  +  + DV++W+ M +G  +     +
Sbjct: 241 VLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSAD 298

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLILENALT 258
             KLF  M+ KG  P  +TI+ VL AC+    ++ G    + +KE   I P       + 
Sbjct: 299 ALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCII 358

Query: 259 DMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERD----- 312
           D+    G++  A+++   + ++ D ++W  ++        VD+A     ++ + D     
Sbjct: 359 DLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAG 418

Query: 313 -YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
            Y+L + +   Y    ++ +   + R+M+T  ++ D
Sbjct: 419 TYILLSNI---YANSQKWEDVAEVRRKMRTRGVKKD 451


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/630 (36%), Positives = 363/630 (57%), Gaps = 7/630 (1%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACK 70
            L    PL+S +E+C S  +L Q+ +     GL  +    ++L+ FC  S+   + +A  
Sbjct: 27  NLVVTHPLLSLLESCASFRRLLQLQALLTVSGLAAHRFPASRLLAFCALSDPPRLAHAAA 86

Query: 71  VFRKIPR-PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           V  +    P+  +  TM++G+ R     + + ++  +L+  +  D  T  F +K  T   
Sbjct: 87  VLAQCAEGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSS 146

Query: 130 AVEFGKELHCHVLKFGF-DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
           +    + +HC   K GF   SV V NAL+  Y     +  AR +FD     DVV+W  + 
Sbjct: 147 SP--AEAIHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLV 204

Query: 189 SGYKRVKQFDETRKLFGEME-RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            GY R    DE  ++F  M    G  P  VT+V   SA  ++  L +G+  H+ V E  +
Sbjct: 205 DGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGV 264

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             ++ LENAL DM+  CG +  A EIF  +  KDV SWT++V+ Y   G ++ A + F +
Sbjct: 265 RMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKE 324

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
           +P R+ V W+ M+  Y + N   EA+ +F +M  + + P + T+VS+L+ACA LG L++G
Sbjct: 325 IPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVG 384

Query: 368 EWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
             +   YI  +KV+  + + NA IDM+ KCGDV  A R+FR M  K+  +W  MIV  A+
Sbjct: 385 RCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHAL 444

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G  +++L +F +     I PDE+TY+GVLSAC+H+G+V EGR +F +M I +GIEP   
Sbjct: 445 HGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAE 504

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546
           HY CM+DLLG+ G L EA EV ++MP+  +   WGALL ACR+H + E+ + AA +++ L
Sbjct: 505 HYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGL 564

Query: 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606
           DP +  +YVL+  IYA+ ++W   + +R ++ DRG+KK PGCS IE++G  HEF+A D S
Sbjct: 565 DPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGKFHEFLAADVS 624

Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           H  +++IY  L+ +    K  GY+  +S V
Sbjct: 625 HAHSEDIYAALENIYLHSKLEGYISHVSCV 654


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/619 (37%), Positives = 346/619 (55%), Gaps = 45/619 (7%)

Query: 20  ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           I+ +  C + + +KQIH+Q IK  L  +P +  KL+    S   ++  A  VF ++P P+
Sbjct: 26  ITDLHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIA-SYSLTNNLSSAVNVFNQVPDPN 84

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLK---SDVRPDNYTFPFLLKGFTRDIA-VEFGK 135
           V L+N +I+ YS   +  N +  +  +LK     V  DN+T+PFLLKG     + +   K
Sbjct: 85  VHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVK 144

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
            +H HV K GF   +FV N+LI  YC CG+V+MA  +F    + DVV+WN+M  G  +  
Sbjct: 145 MVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNG 204

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
             D   K+F EM  +                                       + +  N
Sbjct: 205 DLDGALKVFDEMPER---------------------------------------DRVSWN 225

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
            + D +   GEM  A ++F  +  +D++SW+ +V GY   G +DMAR  FD+ P ++ VL
Sbjct: 226 TMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVL 285

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           WT +I GY    + +EA+ L  EM+ S +R D+   +SIL ACA  G L LG+ +     
Sbjct: 286 WTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFL 345

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSL 434
           +++ +    V N+ IDMY KCG V+ A RVF  M   KD  +W +MI G  I+GHG+KS+
Sbjct: 346 RSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSI 405

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++F+ M+R    PD  T++G+L ACTH G+V+EGR YF  M   +GI P   HYGCMVDL
Sbjct: 406 ELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDL 465

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           LGR GHL EA  ++++MP +PN+I+ G LLGACR+H D ++A   +K + +L P +   +
Sbjct: 466 LGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNF 525

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
            LL NIYA    W N  ++R+ + D G +K  G S IE+   VHEF   D SHP++ +IY
Sbjct: 526 SLLSNIYAQSGDWINVAKVRKQMNDEGGQKPSGVSSIEVEEEVHEFTVRDWSHPKSGDIY 585

Query: 615 LKLDEMTSDLKFVGYMPDI 633
             +D +  DL+ VGY+P +
Sbjct: 586 NMIDRLVHDLRQVGYVPRL 604


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/564 (37%), Positives = 343/564 (60%), Gaps = 6/564 (1%)

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y   G++  +  +F  +   D+  + A  +        D+   L+ ++    + P   T
Sbjct: 73  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
              +L +C+       GK  H +V +  +  +  +   L D+YA  G++  A ++F  + 
Sbjct: 133 FSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
            + ++S TA++T Y  +G V+ AR  FD M ERD V W  MIDGY +     +AL LF++
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248

Query: 339 M-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
           +      +PDE T+V+ L+AC+ +GALE G W+  ++  ++++ ++ V   LIDMY KCG
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVL 456
            +E+A  VF +  RKD   W AMI G A++G+   +L +F++M   + + P ++T++G L
Sbjct: 309 SLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTL 368

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
            AC H G+V+EG   F  M  ++GI+P   HYGC+V LLGRAG L  A E IKNM M  +
Sbjct: 369 QACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDAD 428

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           S++W ++LG+C++H D  + +  A+ ++ L+  N  +YVLL NIYA+   ++   ++R +
Sbjct: 429 SVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNL 488

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + ++GI K PG S IE+   VHEF AGD+ H ++KEIY  L +++  +K  GY+P+ + V
Sbjct: 489 MKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTV 548

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             D+ E +KE+++  HSE+LA+A+GLIS+ PG  ++I KNLR+C DCH + KL+S +  R
Sbjct: 549 LQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGR 608

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           ++++RD+ RFHHF  GSCSC D+W
Sbjct: 609 KIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 204/446 (45%), Gaps = 74/446 (16%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNP--TVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           I+  +S+ ++ QIH+  ++  LL +P   V N  +    +  G ++++  +F +   P +
Sbjct: 36  IDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDL 95

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            L+   I   S         L+Y+ +L S++ P+ +TF  LLK      + + GK +H H
Sbjct: 96  FLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLK----SCSTKSGKLIHTH 151

Query: 141 VLKFGF-------------------------------DSSVFVQNALISTYCLCGEVDMA 169
           VLKFG                                + S+    A+I+ Y   G V+ A
Sbjct: 152 VLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAA 211

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAK 228
           R +FD   + D+V+WN M  GY +    ++   LF ++  +G   P  +T+V  LSAC++
Sbjct: 212 RALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQ 271

Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
           +  L+ G+  H +VK  +I  N+ +   L DMY+ CG +  A+ +F +   KD+++W A+
Sbjct: 272 IGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAM 331

Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPD 347
           + GY                           + GY      ++AL LF EMQ  + ++P 
Sbjct: 332 IAGY--------------------------AMHGY-----SQDALRLFNEMQGITGLQPT 360

Query: 348 EFTIVSILTACANLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF 406
           + T +  L ACA+ G +  G  + ++   +  +K  I     L+ +  + G +++A    
Sbjct: 361 DITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETI 420

Query: 407 REM-LRKDKFTWTAMIVGLAINGHGD 431
           + M +  D   W++++    +  HGD
Sbjct: 421 KNMNMDADSVLWSSVLGSCKL--HGD 444


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/562 (39%), Positives = 346/562 (61%), Gaps = 7/562 (1%)

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P P++ ++NTMI G+    S++    IY  ML++   PD  TF +LL+  T     E  K
Sbjct: 28  PYPNLYIFNTMILGFPF--SNEKAFTIYRSMLQNGTYPDRQTFLYLLQ--TTKFVAEV-K 82

Query: 136 ELHCHVLKFGFDS-SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           ++HCH L FG  S   +++N+LI  Y   G  + AR +FD     +VV++N M  G+ +V
Sbjct: 83  QIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKV 142

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
                  +LF +M   G+ P   T++ +L  C +L +  +GK  H  +++     NLIL 
Sbjct: 143 GNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILY 202

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           NAL DMY  C E+  A ++F     KD +SW  I+ GY   G++++A   F+Q+P RD V
Sbjct: 203 NALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIV 262

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W ++I GY +   +     LF  M   N++PD+ TIV++++A A +GAL+ G W+    
Sbjct: 263 SWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLA 322

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
            K   K + F G+ALIDMYCKCG +E+A  +F ++  KD  TWT MI G A +G G+K+L
Sbjct: 323 VKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKAL 382

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           ++FS M +A   P++VT+V VL+AC+H+G+VDEG + F+ M  ++ IEP   HYGC+VDL
Sbjct: 383 ELFSVM-QAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDL 441

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
           L R+G L +A+ VI+ MPM+P+  +WGA+L ACR+HR+ E+AE A  ++L+L+P+ E  Y
Sbjct: 442 LCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGY 501

Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
           +LL N+YA C RW     +R+++  RG+KK  GCS + ++G+VH+F A +K HP+  +I 
Sbjct: 502 ILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDIC 561

Query: 615 LKLDEMTSDLKFVGYMPDISEV 636
             L  +T++++    +P  S +
Sbjct: 562 SILSFLTNEMRLEADVPSKSHL 583



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 197/433 (45%), Gaps = 67/433 (15%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPT-VQNKLVTFCCSEKGDMKYACKVFRKIPRPSVC 81
           ++T + + ++KQIH   +  GLL+    ++N L+     + G  + A ++F ++   +V 
Sbjct: 72  LQTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYV-DNGCFECARQLFDEMSDRNVV 130

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
            +NTMI G++++ +    + ++ DM    + PD++T   LL    +    + GK +H  +
Sbjct: 131 SYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQI 190

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD--- 198
            K    S++ + NAL+  Y  C E+ +AR +FD   + D V+WN + +GY +V + +   
Sbjct: 191 EKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELAC 250

Query: 199 ------ETRK----------------------LFGEMERKGVLPTSVTIVLVLSACAKLK 230
                  TR                       LF  M  + V P  VTIV ++SA A++ 
Sbjct: 251 DLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMG 310

Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
            LD G+  H    +          +AL DMY  CG +  A  IF  I  KDV +WT ++T
Sbjct: 311 ALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMIT 370

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
           G+   G  +                               +AL LF  MQ +  +P++ T
Sbjct: 371 GFAFHGFGN-------------------------------KALELFSVMQ-AETKPNDVT 398

Query: 351 IVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
            VS+L AC++ G ++ G  + + + K   ++  +     L+D+ C+ G +  A  V  +M
Sbjct: 399 FVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKM 458

Query: 410 -LRKDKFTWTAMI 421
            +   +  W A++
Sbjct: 459 PMEPSRSIWGAVL 471



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 131/281 (46%), Gaps = 9/281 (3%)

Query: 43  GLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLI 102
           G +   TV    +    ++ G+++ AC +F +IP   +  WN++I GY++   +     +
Sbjct: 224 GPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCL 283

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           +  M   +V+PD  T   L+       A++ G+ +H   +K       F  +ALI  YC 
Sbjct: 284 FTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCK 343

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
           CG ++ A  IF+   + DV TW  M +G+      ++  +LF  M+ +   P  VT V V
Sbjct: 344 CGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDVTFVSV 402

Query: 223 LSACAKLKDLDVGKRAHRYVKE-CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           L+AC+    +D G +    +K+   I P +     L D+    G +  A+ +   +  + 
Sbjct: 403 LAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEP 462

Query: 282 VIS-WTAIVTGYINRGQVDMARQYFDQM----PERD--YVL 315
             S W A+++       +++A +   ++    PE++  Y+L
Sbjct: 463 SRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYIL 503


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/590 (38%), Positives = 344/590 (58%), Gaps = 27/590 (4%)

Query: 47  NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDM 106
           N    N L++   ++ G +  A ++F  +P P  C WN+M+ G+++ D  +  +  ++ M
Sbjct: 80  NTFTWNSLISVL-TKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKM 138

Query: 107 LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166
            + D   + Y+F   L      + +  G ++H  V K  + + V++ +ALI  Y  CG V
Sbjct: 139 HREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSV 198

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
             A  +F    + ++VTWN++ + Y++     E  ++F  M   G+ P  VT+  V+SAC
Sbjct: 199 ACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSAC 258

Query: 227 AKLKDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           A L  L  G + H R VK  K   +L+L NAL DMYA C ++  A  +F  +  ++V+S 
Sbjct: 259 ASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSE 318

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           T++V+GY     V  AR  F +M +R+ V W A+I GY +     EAL LFR ++  +I 
Sbjct: 319 TSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIW 378

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           P  +T  ++L                        K+DIFVGN+LIDMY KCG +E   RV
Sbjct: 379 PTHYTFGNLL------------------------KSDIFVGNSLIDMYMKCGSIEDGSRV 414

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F +M  +D  +W A+IVG A NG+G ++L +F +ML     PD VT +GVL AC+H G+V
Sbjct: 415 FEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLV 474

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           +EGR YF  M  +HG+ P + HY CMVDLLGRAG LNEA  +I+ MP+ P+++VWG+LL 
Sbjct: 475 EEGRHYFFSME-EHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLA 533

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           AC+VH + EM + AA+++LE+DP N   YVLL N+YA   RW +   +R+++  +G+ K 
Sbjct: 534 ACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQ 593

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
           PGCS IE+   VH F+  DKSHP  K+IY  L  +T  +K VGY+PD ++
Sbjct: 594 PGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDAND 643



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 214/492 (43%), Gaps = 113/492 (22%)

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           P++  F  LL    R  +    + +H  +L   F   +F+QN LI  Y  C  +D AR +
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 173 FD-------------VSY------------------KDDVVTWNAMFSGYKRVKQFDETR 201
           FD             +S                   + D  +WN+M SG+ +  +F+E+ 
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
           + F +M R+  L    +    LSACA L DL++G + H  V + +   ++ + +AL DMY
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
           + CG +  A E+F  +  +++++W +++T Y   G                         
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPAS---------------------- 230

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVK 380
                    EAL +F  M  S + PDE T+ S+++ACA+L AL+ G  +   + K NK +
Sbjct: 231 ---------EALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFR 281

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRV-------------------------------FREM 409
           +D+ +GNAL+DMY KC  V +A+RV                               F +M
Sbjct: 282 DDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKM 341

Query: 410 LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA----------- 458
            +++  +W A+I G   NG  +++L +F  + R SI P   T+  +L +           
Sbjct: 342 TQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDM 401

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPM---KP 515
               G +++G   F  M  +  +  N    G       + G+  EAL++ + M +   KP
Sbjct: 402 YMKCGSIEDGSRVFEKMKERDCVSWNAIIVG-----YAQNGYGAEALQIFRKMLVCGEKP 456

Query: 516 NSIVWGALLGAC 527
           + +    +L AC
Sbjct: 457 DHVTMIGVLCAC 468



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 155/302 (51%)

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
           LP S     +L +C + +     +  H  +   +    + ++N L D+Y  C  +  A +
Sbjct: 12  LPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARK 71

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  +  ++  +W ++++     G +D A + F  MPE D   W +M+ G+ + +RF E+
Sbjct: 72  LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           L  F +M   +   +E++  S L+ACA L  L +G  V   + K++   D+++G+ALIDM
Sbjct: 132 LEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM 191

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG V  A+ VF  M+ ++  TW ++I     NG   ++L++F +M+ + + PDEVT 
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTL 251

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
             V+SAC     + EG +  A +   +    +      +VD+  +   +NEA  V   M 
Sbjct: 252 ASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 513 MK 514
           ++
Sbjct: 312 IR 313



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 156/351 (44%), Gaps = 30/351 (8%)

Query: 16  ETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           E  L S +  C S+  LK   QIH++ +K     +  V    +    ++   +  A +VF
Sbjct: 248 EVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVF 307

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
            ++   +V    +M+ GY+R  S K    ++  M + +V     ++  L+ G+T++   E
Sbjct: 308 DRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYTQNGENE 363

Query: 133 FGKELHCHVLK----------FG--FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
               L   +LK          FG    S +FV N+LI  Y  CG ++    +F+   + D
Sbjct: 364 EALRLF-RLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERD 422

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
            V+WNA+  GY +     E  ++F +M   G  P  VT++ VL AC+    ++ G+    
Sbjct: 423 CVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFF 482

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVD 299
            ++E  ++P       + D+    G +  A  +   +  N D + W +++      G ++
Sbjct: 483 SMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIE 542

Query: 300 MARQYFDQMPERD------YVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           M +   +++ E D      YVL + M   Y  + R+ + + + + M+   +
Sbjct: 543 MGKHAAEKLLEIDPWNSGPYVLLSNM---YAELGRWGDVVRVRKLMRQQGV 590


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/471 (44%), Positives = 309/471 (65%), Gaps = 2/471 (0%)

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            +EN+L   Y ACG++G A ++F  +  KDVISWT+IV  Y     +  A + F   P +
Sbjct: 194 FVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVK 253

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D V WTAM+ GY +     +AL  F +M  + +  DE ++   ++ACA LGA++   WV+
Sbjct: 254 DMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQ 313

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
              ++N +  ++ VG+ L+DMY KCG +++A++VF  M  K+ +T+++MIVGLA +G  +
Sbjct: 314 EIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRAN 373

Query: 432 KSLDMFSQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
             + +F+ M+R A + P+ VT++GVL+AC+H GMV EGR YFA M  ++GI P+  HY C
Sbjct: 374 DVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYAC 433

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           MVDLL R+G + EAL+++K+M ++P+  VWGALLGACR+H + E+A++AA+ +  L+P+ 
Sbjct: 434 MVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEPEG 493

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE-MNGVVHEFVAGDKSHPQ 609
              YVLL N  A+   WD   +LR+++  RG+KK P  S  E  +G VH+F AGD +HP 
Sbjct: 494 IGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDNTHPS 553

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
             EI  +L E+   L   GY+P +S V  +V EE+KER +  HSEKLA++FGL++     
Sbjct: 554 MHEIKKRLLELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLLTLESRS 613

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +IRIVKNLR+C DCH   +LVS V   E++VRD  RFHHF+ G CSC  +W
Sbjct: 614 SIRIVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 140/297 (47%), Gaps = 23/297 (7%)

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           GFD   FV+N+LIS Y  CG+V  AR +FD     DV++W ++   Y R++      ++F
Sbjct: 188 GFDKHRFVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVF 247

Query: 205 GEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264
                K ++  +  +         +K L+         ++  +    I E +LT   +AC
Sbjct: 248 ALCPVKDMVAWTAMVTGYAQNAMPVKALEA-------FEQMAVAGMPIDEVSLTGAISAC 300

Query: 265 GEMG------FALEIFG-NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
            ++G      +  EI   N   ++V+  + +V  Y   G +D AR+ F+ M +++   ++
Sbjct: 301 AQLGAVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYS 360

Query: 318 AMIDGYLRVNRFREALTLFREM-QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
           +MI G     R  + + LF +M + +++ P+  T + +LTAC++ G ++ G +   Y  +
Sbjct: 361 SMIVGLASHGRANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRY---YFAQ 417

Query: 377 NKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
            K +  I         ++D+  + G V +A  + + M +      W A++    I+G
Sbjct: 418 MKDRYGILPSADHYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHG 474


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 339/587 (57%), Gaps = 31/587 (5%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           GK  H  +L  G  + +   N LI+ Y  CG VD AR +FD      +V+WN M     +
Sbjct: 83  GKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQ 142

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
             + +E   L  +M+R+G   +  TI  VL ACA    L   +  H +  +  +  N+ +
Sbjct: 143 NGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFV 202

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             AL D+YA CG M            KD +                     F+ MP+R  
Sbjct: 203 ATALLDVYAKCGLM------------KDAVC-------------------VFESMPDRSV 231

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           V W++M  GY++   + +AL LFR+   + ++ D+F + S++ ACA L A+  G+ +   
Sbjct: 232 VTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNAL 291

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           + K+   ++IFV ++LIDMY KCG +E++ +VFR++ +++   W AMI GL+ +    + 
Sbjct: 292 LSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEV 351

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           + +F +M +  + P++VT+V VLSAC H G+V +G++YF  MT +H + PN  HY CMVD
Sbjct: 352 MILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVD 411

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
            L RAG + EA ++I  +P   ++ +WG+LL +CR H + E+AE+AAK++ +++P N   
Sbjct: 412 TLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGN 471

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           Y+LL N+YAA  +WD   ++R+++ +  +KK  G S IE+   VH F+ G+++HP+  EI
Sbjct: 472 YLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEI 531

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
           Y KL+E+  +L+ +GY  +       VGE  K+  +  HSEKLA   GL+   P   IRI
Sbjct: 532 YSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRI 591

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +KNLR+C DCH   KL S  + R+VIVRD  RFHHFK+G CSC D+W
Sbjct: 592 MKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 183/401 (45%), Gaps = 34/401 (8%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           Q K  H+Q + +GL T+    N L+    S+ G + +A +VF ++P  S+  WNTMI   
Sbjct: 82  QGKACHAQILLMGLKTDLLTSNILINMY-SKCGSVDFARQVFDEMPSRSLVSWNTMIGSL 140

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           ++       + + L M +       +T   +L       A+   + LH   +K   D +V
Sbjct: 141 TQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNV 200

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
           FV  AL+  Y  CG +  A  +F+      VVTW++M +GY + + +++   LF +    
Sbjct: 201 FVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWET 260

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G+      +  V+ ACA L  +  GK+ +  + +     N+ + ++L DMYA CG +  +
Sbjct: 261 GLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEES 320

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            ++F +++ ++V+ W                                AMI G  R  R  
Sbjct: 321 YKVFRDVEKRNVVLW-------------------------------NAMISGLSRHARSL 349

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNAL 389
           E + LF +MQ   + P++ T VS+L+AC ++G +  G+ +      ++ +  ++F  + +
Sbjct: 350 EVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCM 409

Query: 390 IDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           +D   + G + +A  +  ++        W +++     +G+
Sbjct: 410 VDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGN 450



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 170/348 (48%), Gaps = 13/348 (3%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           +P S  T  + L +    C ++ + + +H+  IK  +  N  V   L+    ++ G MK 
Sbjct: 161 TPFSEFTISSVLCACAAKC-ALSECQLLHAFAIKAAMDLNVFVATALLDVY-AKCGLMKD 218

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A  VF  +P  SV  W++M  GY + + ++  + ++    ++ ++ D +    ++     
Sbjct: 219 AVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAG 278

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             A+  GK+++  + K GF S++FV ++LI  Y  CG ++ +  +F    K +VV WNAM
Sbjct: 279 LAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAM 338

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECK 246
            SG  R  +  E   LF +M++ G+ P  VT V VLSAC  +  +  G++    + KE  
Sbjct: 339 ISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHH 398

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDM----A 301
           + PN+   + + D  +  G++  A ++   +  N     W +++      G +++    A
Sbjct: 399 LAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAA 458

Query: 302 RQYFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           ++ FD  P    +Y+L + M   Y    ++ E   + + ++ S+++ +
Sbjct: 459 KKLFDIEPHNSGNYLLLSNM---YAANGKWDEVAKMRKLLKESDVKKE 503



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           IL  CA    L  G+     I    +K D+   N LI+MY KCG V+ A++VF EM  + 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
             +W  MI  L  NG  +++LD+  QM R      E T   VL AC     + E +   A
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
              I+  ++ N      ++D+  + G + +A+ V ++MP + + + W ++
Sbjct: 190 -FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDR-SVVTWSSM 237


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/621 (36%), Positives = 350/621 (56%), Gaps = 7/621 (1%)

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
           + +L    +P   T+  L++  ++  A+E GK++H H+   GF   + + N L+  Y  C
Sbjct: 74  VQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKC 133

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G +  AR +FD     D+ +WN M +GY  V   +E RKLF EM  K     +  +   +
Sbjct: 134 GSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYV 193

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK----N 279
                 + L +     R        PN+   +      AA   +    EI G+I     +
Sbjct: 194 KKDQPEEALVLYSLMQRVPNS---RPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLD 250

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
            D + W++++  Y   G +D AR  FD++ E+D V WT+MID Y + +R+RE  +LF E+
Sbjct: 251 SDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSEL 310

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
             S  RP+E+T   +L ACA+L   ELG+ V  Y+ +       F  ++L+DMY KCG++
Sbjct: 311 VGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNI 370

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           E A+ V     + D  +WT++I G A NG  D++L  F  +L++   PD VT+V VLSAC
Sbjct: 371 ESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSAC 430

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           TH G+V++G E+F  +T +H +     HY C+VDLL R+G   +   VI  MPMKP+  +
Sbjct: 431 THAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFL 490

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           W ++LG C  + + ++AE AA+++ +++P+N   YV + NIYAA  +W+   ++R+ + +
Sbjct: 491 WASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQE 550

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD 639
            G+ K PG S  E+    H F+A D SHP   +I   L E+   +K  GY+P  S V  D
Sbjct: 551 IGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHD 610

Query: 640 VGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVI 699
           V +E KE  +  HSEKLA+AF ++S+  G  I++ KNLR CVDCH   K +S +  R++ 
Sbjct: 611 VEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKIT 670

Query: 700 VRDKTRFHHFKHGSCSCKDYW 720
           VRD TRFH F++G CSC DYW
Sbjct: 671 VRDSTRFHCFENGQCSCGDYW 691



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 122/494 (24%), Positives = 217/494 (43%), Gaps = 72/494 (14%)

Query: 9   PPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYA 68
           P ST      LI       ++ + K++H      G +    + N+L+    ++ G +  A
Sbjct: 84  PASTYCN---LIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMY-AKCGSLVDA 139

Query: 69  CKVFRKIPRPSVCLWNTMIKGYSRI-------------------------------DSHK 97
            KVF ++P   +C WN M+ GY+ +                               D  +
Sbjct: 140 RKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPE 199

Query: 98  NGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
             +++Y  M +  + RP+ +T    +        +  GKE+H H+++ G DS   + ++L
Sbjct: 200 EALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSL 259

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           +  Y  CG +D AR IFD   + DVV+W +M   Y +  ++ E   LF E+      P  
Sbjct: 260 MDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNE 319

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T   VL+ACA L   ++GK+ H Y+      P     ++L DMY  CG +  A  +   
Sbjct: 320 YTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDG 379

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
               D++SWT+++ G    GQ D A +YFD + +                          
Sbjct: 380 CPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLK-------------------------- 413

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCK 395
                S  +PD  T V++L+AC + G +E G E+  +  +K+++ +       L+D+  +
Sbjct: 414 -----SGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLAR 468

Query: 396 CGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYV 453
            G  E+ + V  EM ++  KF W +++ G +  G+ D + +   ++ +  I P+  VTYV
Sbjct: 469 SGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFK--IEPENPVTYV 526

Query: 454 GVLSACTHTGMVDE 467
            + +     G  +E
Sbjct: 527 TMANIYAAAGKWEE 540



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 176/415 (42%), Gaps = 73/415 (17%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K+IH   ++ GL ++  + + L+     + G +  A  +F KI    V  W +MI  Y +
Sbjct: 238 KEIHGHIVRAGLDSDEVLWSSLMDMY-GKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               + G  ++ +++ S  RP+ YTF  +L         E GK++H ++ + GFD   F 
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFA 356

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            ++L+  Y  CG ++ A+ + D   K D+V+W ++  G  +  Q DE  K F  + + G 
Sbjct: 357 SSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGT 416

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P  VT V VLSAC                                  +A   E G  LE
Sbjct: 417 KPDHVTFVNVLSACT---------------------------------HAGLVEKG--LE 441

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
            F +I  K  +S T+                        D+  +T ++D   R  RF + 
Sbjct: 442 FFYSITEKHRLSHTS------------------------DH--YTCLVDLLARSGRFEQL 475

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI-FVGNALID 391
            ++  EM    ++P +F   S+L  C+  G ++L E     + K + +N + +V   + +
Sbjct: 476 KSVISEMP---MKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYV--TMAN 530

Query: 392 MYCKCGDVEKAQRVFREM-----LRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
           +Y   G  E+  ++ + M      ++   +WT +     +    D S  M++Q++
Sbjct: 531 IYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIV 585


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/604 (38%), Positives = 356/604 (58%), Gaps = 59/604 (9%)

Query: 135 KELHCHVLKFGFD---SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           K+LH   L+  +    +++F+   ++       +V+ A  +FD         WN +    
Sbjct: 46  KQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRAC 105

Query: 192 KR-VKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
              V + +E   L+ +M ER    P   T   VL ACA +  L  GK+ H     C+IV 
Sbjct: 106 AHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVH-----CQIVK 160

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           +                 GF+ +++ N           ++  Y + G +D+AR+ FD+MP
Sbjct: 161 H-----------------GFSGDVYVN---------NGLIHFYGSCGCLDLARKVFDEMP 194

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ER  V W +MID  +RV  +  AL LFR+MQ S   PD +T+ S+L+ACA LG+L LG W
Sbjct: 195 ERSLVSWNSMIDALVRVGEYDSALQLFRDMQKS-FEPDGYTMQSVLSACAGLGSLSLGTW 253

Query: 370 VKTYIDKN---KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
              ++ +N    V  D+ + N+LI+MYCKCG +  A++VF+ M + D  +W AMI+G A 
Sbjct: 254 SHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFAT 313

Query: 427 NGHGDKSLDMFSQMLR--ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           +G  +++++ F  M++   ++ P+ VT+V +L AC H GMV++GR+YF  M  ++GIEP 
Sbjct: 314 HGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPA 373

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC-RVHRDAEMAEMAAKQI 543
             HYGC++DLL RAG++ EA++++ +MPMKP++++W +LL AC +     E++E  A+ I
Sbjct: 374 LEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 433

Query: 544 LELDPDNEA-------VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
           +    DN++        YVLL  +YA+ NRW++   +R+++ D GI+K PGCS IE+NG+
Sbjct: 434 IGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGI 493

Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKL 656
            +EF AGD SHPQTK+IY +L  +   L+          +     +  KE ++  HSE+L
Sbjct: 494 SNEFFAGDTSHPQTKQIYQQLKVIDDRLR---------SIVDATNDSSKEYSLRLHSERL 544

Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
           A+AFGLIS  P   IRI KNLR+C DCH + KL+S V++ E+IVRD+ RFHHFK GSCSC
Sbjct: 545 AIAFGLISLPPQTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSC 604

Query: 717 KDYW 720
            DYW
Sbjct: 605 LDYW 608



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 211/427 (49%), Gaps = 41/427 (9%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPT---VQNKLVTFCCSE 61
           +S S  +       ++S  ETC  M QLKQ+H+ T++      P    +  K++    S 
Sbjct: 18  NSPSASTAGNHHRRILSLAETCSDMSQLKQLHAFTLRTTYPDEPATLFLYGKILQLS-SS 76

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKN-GVLIYLDML-KSDVRPDNYTFP 119
             D+ YA +VF  I   S  +WNT+I+  +   S K    ++Y  ML + +  PD +TFP
Sbjct: 77  FSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFP 136

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           F+LK       +  GK++HC ++K GF   V+V N LI  Y  CG +D+AR +FD   + 
Sbjct: 137 FVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPER 196

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
            +V+WN+M     RV ++D   +LF +M+ K   P   T+  VLSACA L  L +G  +H
Sbjct: 197 SLVSWNSMIDALVRVGEYDSALQLFRDMQ-KSFEPDGYTMQSVLSACAGLGSLSLGTWSH 255

Query: 240 RY-VKEC--KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
            + ++ C   +  +++++N+L +MY  CG +  A ++F  ++  D+ SW A++ G+   G
Sbjct: 256 VFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHG 315

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
           + + A   FD M +                             +  N++P+  T V++L 
Sbjct: 316 KAEEAMNCFDCMVK-----------------------------EGKNVKPNSVTFVALLI 346

Query: 357 ACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
           AC + G +  G ++    + +  ++  +     +ID+  + G + +A  +   M ++ D 
Sbjct: 347 ACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDA 406

Query: 415 FTWTAMI 421
             W +++
Sbjct: 407 VIWRSLL 413


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/624 (36%), Positives = 343/624 (54%), Gaps = 37/624 (5%)

Query: 97  KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
           KN V +  D++      D +T   LL+   +  ++  GK  H   + FG  +     N L
Sbjct: 44  KNLVRVERDLI------DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNIL 97

Query: 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
           I+ Y  CG+ D AR +FD      +++WN M +GY   ++  E  KLF  M R+G   T 
Sbjct: 98  INLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTE 157

Query: 217 VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276
            T+   L ACA    +   K+ H    +  +  +  +  A  D+YA C  +  A  +F N
Sbjct: 158 FTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFEN 217

Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 336
                                          MPE+  V W+++  G+++     E L LF
Sbjct: 218 -------------------------------MPEKTSVTWSSLFAGFVQNGLHEEVLCLF 246

Query: 337 REMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396
           +  Q   ++  EFT+ SIL+ CA+L  +  G  V   I K+    ++FV  +L+D+Y KC
Sbjct: 247 QSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKC 306

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G +EK+  VF +M  K+   W AMI   + + H  +++ +F +M +  I P+EVTY+ +L
Sbjct: 307 GQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSIL 366

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+HTG+V+EGR YF  +      EPN  HY CMVD+LGR+G  +EA +++  MP +P 
Sbjct: 367 SACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPT 426

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           + +WG+LLG+ R+H++  +A +AA+Q+  L+P+N   +VLL N+YAA   W+N    R+ 
Sbjct: 427 ASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKY 486

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + D G KK  G S IE  G +H FVAG++ HP   ++Y KL+E+  +++ + +  +    
Sbjct: 487 LRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCD 546

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             DV  + KE  +  HSEKLA AFGLIS  P + I I KNLR+C DCH   K+VS + +R
Sbjct: 547 LHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITER 606

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           +VIVRD  RFHHFK GSCSC D+W
Sbjct: 607 QVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 172/378 (45%), Gaps = 33/378 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K  H   I  GL+T+    N L+    ++ G    A +VF  +   S+  WNTMI GY+ 
Sbjct: 76  KSCHGLAIHFGLVTDTVTCNILINLY-TKCGQNDCARRVFDAMSVRSIISWNTMIAGYTH 134

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
                  + ++  M +   +   +T    L       A+   K+LH   +K   DSS FV
Sbjct: 135 NREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFV 194

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             A +  Y  C  +  A  +F+   +   VTW+++F+G+ +    +E   LF   +R+G+
Sbjct: 195 GTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGM 254

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
             T  T+  +LS CA L  +  G + H  + +     NL +  +L D+YA CG++  + E
Sbjct: 255 QLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYE 314

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F +++ K+V+ W A++  +                  R    W AMI            
Sbjct: 315 VFADMEEKNVVLWNAMIASF-----------------SRHAHSWEAMI------------ 345

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALID 391
             LF +MQ   I P+E T +SIL+AC++ G +E G  +    +     + ++   + ++D
Sbjct: 346 --LFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVD 403

Query: 392 MYCKCGDVEKAQRVFREM 409
           +  + G  ++A ++  +M
Sbjct: 404 VLGRSGKTDEAWKLLDKM 421


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/789 (33%), Positives = 398/789 (50%), Gaps = 88/789 (11%)

Query: 5   SSISPPSTLTQETPLISPIETCE----SMHQLKQI-HSQTIK--LGLLTNPTVQNKLVTF 57
           SS  PP     E   ++    CE    + H L+   H+       GL     + + LV F
Sbjct: 87  SSPEPP----DEDAYVALFHLCEWRRAAEHGLRACGHADAAHGTFGLRLGNAMLSMLVRF 142

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
                G+  +A KVF K+P   V  WN M+ GY +    +  + +Y  ML +  RPD YT
Sbjct: 143 -----GETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYT 197

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           FP +L+       +  G+E+H HVL+FG    V V NAL++ Y  CG+V+ AR +FD   
Sbjct: 198 FPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMS 257

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
             D ++WNAM +G+    + +   +LF  M    V P  +TI  V  A   L DLD  K 
Sbjct: 258 LTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKE 317

Query: 238 AH--------------------------RYVKECKIVPNLILENAL--TDMYAACGEMGF 269
            H                          R  + C +   +   +A+  T M +   + GF
Sbjct: 318 IHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGF 377

Query: 270 ---ALEIFG-----NIKNKDV----------------------------------ISWTA 287
              ALE++      N+   DV                                  +   A
Sbjct: 378 PDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANA 437

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           +V  Y     ++ A + F  MP++D + W++MI G+   ++  EAL  FR M  ++++P+
Sbjct: 438 LVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHM-LADVKPN 496

Query: 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407
             T ++ L ACA  G+L  G+ +  ++ +  + ++ +V NAL+D+Y KCG    A   F 
Sbjct: 497 SVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFG 556

Query: 408 EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467
               KD  +W  M+ G   +GHGD +L  F++ML     PDEVT+V +L  C+  GMV +
Sbjct: 557 AHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQ 616

Query: 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC 527
           G E F  MT ++ I PN  HY CMVDLL R G L E    I  MP+ P++ VWGALL  C
Sbjct: 617 GWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGC 676

Query: 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPG 587
           R+HR+ E+ E+AAK +LEL+P++   +VLL ++YA    W    ++R+ +  +G++   G
Sbjct: 677 RIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYG 736

Query: 588 CSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKER 647
           CS +E+ G +H F+  D+SHPQ KEI   LD +   +K  G+ P +    L+  E  K+ 
Sbjct: 737 CSWVEVKGAIHAFLTDDESHPQIKEINDVLDGIYERMKASGFAP-VESYSLEDKEVSKDD 795

Query: 648 AVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFH 707
            +  HSE+LA+AFGLI++ PG +I + KN   C  CH + +++S +  RE+ VRD   FH
Sbjct: 796 VLCGHSERLAVAFGLINTTPGTSICVTKNQYTCESCHGILRMISKIVRREITVRDTKEFH 855

Query: 708 HFKHGSCSC 716
           HF+ GSCSC
Sbjct: 856 HFRDGSCSC 864



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 5/200 (2%)

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
              ++AL L   +++S   PDE   V++   C    A E G     + D       + +G
Sbjct: 76  GELQQALWL---LESSPEPPDEDAYVALFHLCEWRRAAEHGLRACGHADAAHGTFGLRLG 132

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
           NA++ M  + G+   A +VF +M  +D F+W  M+ G    G  +++LD++ +ML A   
Sbjct: 133 NAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGAR 192

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
           PD  T+  VL +C     +  GRE  A + ++ G+         +V +  + G +  A +
Sbjct: 193 PDVYTFPCVLRSCGGVPDLTMGREVHAHV-LRFGLGVEVDVLNALVTMYAKCGDVEAARK 251

Query: 507 VIKNMPMKPNSIVWGALLGA 526
           V   M +  + I W A++  
Sbjct: 252 VFDGMSLT-DCISWNAMIAG 270


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/603 (36%), Positives = 346/603 (57%), Gaps = 32/603 (5%)

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           +  LL+      A+E GK+LH  + + G   +  +   L++ YC+C  +  A  +FD   
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           K ++  WN M  GY     ++    L+ +M   G++P   T   VL AC+ L  ++ GK+
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H+ V    +  ++ +  AL DMYA CG                                
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCG-------------------------------C 152

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
           V+ ARQ FD++ ERD V W +M+  Y +  +  E+L L R M  + ++P E T V  + A
Sbjct: 153 VESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAA 212

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
            A+ G L  G+ +  Y  ++  +++  V  AL+DMY K G V  A+ +F  +  K   +W
Sbjct: 213 SADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSW 272

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
            AMI G A++GH +++LD+F +M +  ++PD +T+VGVL+AC+H G+++EG+ +F  M  
Sbjct: 273 NAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMIS 331

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
              I P   HY CM+DLLG  G L EA ++I  M ++P++ VWGALL +C++H + EM E
Sbjct: 332 DFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGE 391

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
           +A ++++EL+PD+   YV+L N+YA   +WD    LR +++++G+KK+  CS IE+   V
Sbjct: 392 LALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKV 451

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLA 657
           H F++ D SHP+++ IY +L      +K  GY P +  VF DV +++K   V  HSE+LA
Sbjct: 452 HAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSCHSERLA 511

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           +AFGLIS+  G  + I+KNLR+C DCH   K +S + +RE+ +RD  R+HHFK G CSC 
Sbjct: 512 IAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKDGVCSCG 571

Query: 718 DYW 720
           D+W
Sbjct: 572 DFW 574



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 198/399 (49%), Gaps = 35/399 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQ+H++  ++G+  NP +  KLV   C     +  A  +F +I + ++ LWN MI+GY+ 
Sbjct: 21  KQLHARICQVGISFNPLLATKLVNLYCI-CNSLTNAHLLFDRISKRNLFLWNVMIRGYAW 79

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
              ++  + +Y  M    + PD +TFPF+LK  +   A+E GK++H  V++ G +S VFV
Sbjct: 80  NGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFV 139

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
             ALI  Y  CG V+ AR +FD   + DVV WN+M + Y +  Q DE+  L   M   G+
Sbjct: 140 GAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGL 199

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            PT  T V+ ++A A    L  GK  H Y        N  ++ AL DMYA  G +  A  
Sbjct: 200 KPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARS 259

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  ++ K V+SW A++TGY   G  +                               EA
Sbjct: 260 LFELLEEKRVVSWNAMITGYAMHGHAN-------------------------------EA 288

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW-VKTYIDKNKVKNDIFVGNALID 391
           L LF+EM+   + PD  T V +L AC++ G L  G+   ++ I    +   +     +ID
Sbjct: 289 LDLFKEMK-GKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMID 347

Query: 392 MYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           +   CG +E+A ++  EM +  D   W A++    I+G+
Sbjct: 348 LLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGN 386


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/568 (39%), Positives = 341/568 (60%), Gaps = 43/568 (7%)

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK---LFGEM-ERKGVLPTSVTIV 220
           +++ A  +FD     +   WN +     + +     R+   L+  M +R    P + T  
Sbjct: 71  DLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFP 130

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            VL ACA L  L  GK+AH ++ +     ++ + N+L   YA+CG +             
Sbjct: 131 FVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSL------------- 177

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
                             + A+  FD+MP+R  V W AMID ++    F  AL LF + Q
Sbjct: 178 ------------------ESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQ 219

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN----KVKNDIFVGNALIDMYCKC 396
                PD +TI S++ ACA L AL LG W   ++ +N      ++ + V N+L+DMYCKC
Sbjct: 220 QQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKC 279

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGV 455
           G ++ A ++F  M + D  +W +MI+G A++G G+ +L+ F +M+R S  +P+ +T+VGV
Sbjct: 280 GSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFVGV 339

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           LSAC H  MV+EGR+YF  M  ++ IEP   HYGC+VD+L RAG ++EALE++ +MPMKP
Sbjct: 340 LSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKP 399

Query: 516 NSIVWGALLGA-CRVHRDAEMAEMAAKQILEL-DPDNEAVYVLLCNIYAACNRWDNFREL 573
           + ++W +LL + C+ +   E++E  A+QILE  + D+  VYVLL  +YA+ +RW++   +
Sbjct: 400 DVVIWRSLLDSCCKKNASVELSENIARQILESEEADSSGVYVLLSRVYASASRWNDVGLV 459

Query: 574 RQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDI 633
           R+++ + GI K PGCS+IE++GV HEF AGD SHPQTKEIY  L+ +   +   GY PD 
Sbjct: 460 RKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTSHPQTKEIYQVLNVVEERIDSTGYKPDY 519

Query: 634 SEV-FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSM 692
           S+   +D     K  ++  HSE+LA+A GL++  PG+ IRI KNLR+C DCH++  L+S 
Sbjct: 520 SQAPMVDELNTSKRDSLRLHSERLAIALGLLNLKPGMPIRIFKNLRVCDDCHKVTGLISE 579

Query: 693 VYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +++ E+IVRD+ RFHHFK GSCSC DYW
Sbjct: 580 IFNVEIIVRDRVRFHHFKDGSCSCMDYW 607



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 224/433 (51%), Gaps = 51/433 (11%)

Query: 8   SPPSTLTQETP------LISPIETCESMHQLKQIHSQTIKLGLLTNPT---VQNKLVTFC 58
           SPP  +    P      L+  +  C+ M QLKQIH+ +++  L  + T   + ++++ F 
Sbjct: 8   SPPPQIVTSKPTNHYNLLLQHLNECKDMSQLKQIHALSLRSTLPNHSTTLFLYSRILHF- 66

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDS---HKNGVLIYLDML-KSDVRPD 114
            S   D+ YA +VF ++  P+  +WN +I+  ++  S    +  +L+Y  ML +S   PD
Sbjct: 67  -SSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPD 125

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174
           N+TFPF+LK      A+  GK+ H H+LK GF S V++ N+LI  Y  CG ++ A+ +FD
Sbjct: 126 NHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFD 185

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
              +  +V+WNAM   +    +F+   +LF + +++   P   TI  V++ACA L  L +
Sbjct: 186 KMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSL 245

Query: 235 GKRAHRY-VKECKIV---PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
           G  AH + ++ C +     ++++ N+L DMY  CG +  A +IF  ++  DV SW +++ 
Sbjct: 246 GMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMIL 305

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
           G+   G+ ++A + F++M               +R++RF                P+  T
Sbjct: 306 GFAMHGKGELALECFERM---------------IRISRF---------------VPNSIT 335

Query: 351 IVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
            V +L+AC +   +  G ++    +++ K++  +     L+D+  + G +++A  +   M
Sbjct: 336 FVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASM 395

Query: 410 -LRKDKFTWTAMI 421
            ++ D   W +++
Sbjct: 396 PMKPDVVIWRSLL 408


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/603 (37%), Positives = 349/603 (57%), Gaps = 33/603 (5%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           +++ G+ +H  +     +    + + L+  Y  CG++   R IFD    + V  WN + +
Sbjct: 116 SIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMN 175

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY ++  F E+  LF  M   G+          + +  KL D ++G R            
Sbjct: 176 GYAKIGNFRESLSLFKRMRELGIRR--------VESARKLFD-ELGDR------------ 214

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIK----NKDVISWTAI--------VTGYINRGQ 297
           ++I  N++   Y + G     L++F  +     N D+ +  ++        +  Y   G 
Sbjct: 215 DVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGN 274

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
           ++ A Q F+ M ER  V WT+MI GY R      ++ LF EM+  ++ P+  T+  IL A
Sbjct: 275 LNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPA 334

Query: 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
           CA+L ALE G+ +  +I +N    D  V NAL+DMY KCG +  A+ +F  +  KD  +W
Sbjct: 335 CASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSW 394

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477
           T MI G  ++G+G +++  F++M  + I PDEV+++ +L AC+H+G++DEG  +F  M  
Sbjct: 395 TVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRN 454

Query: 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
              IEP   HY C+VDLL RAG+L++A + IK MP++P++ +WGALL  CR++ D ++AE
Sbjct: 455 NCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAE 514

Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
             A+ + EL+P+N   YVLL NIYA   +W+  ++LR+ I  RG++K PGCS IE+ G V
Sbjct: 515 KVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKV 574

Query: 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLA 657
           H FV GD SHP   +I L L +  + +K  G+ P +    +   + +KE A+  HSEK+A
Sbjct: 575 HIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIA 634

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           MAFG++S  PG T+R+ KNLR+C DCH MAK +S +  R++I+RD  RFHHFK GSCSC+
Sbjct: 635 MAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCR 694

Query: 718 DYW 720
            +W
Sbjct: 695 GHW 697



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 204/449 (45%), Gaps = 60/449 (13%)

Query: 4   NSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG 63
           N S  P   L     ++      +S+   ++IHS      +  +  + +KLV F     G
Sbjct: 92  NQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLV-FMYVTCG 150

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR----------- 112
           D++   ++F K+    V LWN ++ GY++I + +  + ++  M +  +R           
Sbjct: 151 DLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDE 210

Query: 113 ---PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS--------SVFVQNALISTYC 161
               D  ++  ++ G+  +   E G +L   +L  G ++         + + N L+  Y 
Sbjct: 211 LGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYS 270

Query: 162 LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221
             G ++ A  +F+   +  VV+W +M +GY R    D + +LF EME++ + P S+T+  
Sbjct: 271 KSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMAC 330

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L ACA L  L+ G+  H ++       +  + NAL DMY  CG +G A  +F  I  KD
Sbjct: 331 ILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKD 390

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           ++SWT ++ GY                           + GY       EA+  F EM+ 
Sbjct: 391 LVSWTVMIAGY--------------------------GMHGY-----GSEAIAAFNEMRN 419

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN---KVKNDIFVGNALIDMYCKCGD 398
           S I PDE + +SIL AC++ G L+ G      +  N   + K++ +    ++D+  + G+
Sbjct: 420 SGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYA--CIVDLLARAGN 477

Query: 399 VEKAQRVFREM-LRKDKFTWTAMIVGLAI 426
           + KA +  + M +  D   W A++ G  I
Sbjct: 478 LSKAYKFIKMMPIEPDATIWGALLCGCRI 506



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 165/385 (42%), Gaps = 60/385 (15%)

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T   VL  CA LK +  G+R H  ++   +  + +L + L  MY  CG++     IF  +
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 278 KNKDVISWTAIVTGYINRG------------------QVDMARQYFDQMPERDYVLWTAM 319
            N+ V  W  ++ GY   G                  +V+ AR+ FD++ +RD + W +M
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I GY+      + L LF +M    I  D  T+VS+                         
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV------------------------- 257

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
             ++ + N L+DMY K G++  A +VF  M  +   +WT+MI G A  G  D S+ +F +
Sbjct: 258 --ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 315

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M +  + P+ +T   +L AC     ++ G+E    + +++G   +      +VD+  + G
Sbjct: 316 MEKEDLFPNSITMACILPACASLAALERGQEIHGHI-LRNGFSLDRHVANALVDMYLKCG 374

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLL 557
            L  A  +   +P K + + W  ++    +H     A  A  ++    ++PD     V  
Sbjct: 375 ALGLARLLFDMIPEK-DLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDE----VSF 429

Query: 558 CNIYAACNR-------WDNFRELRQ 575
            +I  AC+        W  F  +R 
Sbjct: 430 ISILYACSHSGLLDEGWGFFNMMRN 454



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 124/258 (48%), Gaps = 31/258 (12%)

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRP----DEFTIVSILTACANLGALELGEWVKTYI 374
           + D  + + RF E   L R M+  N  P    +  T  S+L  CA+L +++ G  + + I
Sbjct: 68  ITDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSII 127

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
             N V+ D  +G+ L+ MY  CGD+ + +R+F ++  +  F W  ++ G A  G+  +SL
Sbjct: 128 QSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESL 187

Query: 435 DMFSQMLRASII--------------PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
            +F +M    I                D +++  ++S     G+ ++G + F  M +  G
Sbjct: 188 SLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLL-G 246

Query: 481 IEPNEAHY--------GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532
           I  + A           C++D+  ++G+LN A++V + M  + + + W +++     +  
Sbjct: 247 INTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGER-SVVSWTSMIAG---YAR 302

Query: 533 AEMAEMAAKQILELDPDN 550
             +++M+ +   E++ ++
Sbjct: 303 EGLSDMSVRLFHEMEKED 320


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/615 (36%), Positives = 340/615 (55%), Gaps = 32/615 (5%)

Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
           +L  ++ P    +  ++    +   +   + +H H+ +       F+ N+LI  YC CG 
Sbjct: 53  LLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGA 112

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           V  AR +FD     DVV+W  + +GY +     E   L  +M R    P+  T    L A
Sbjct: 113 VSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKA 172

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
                   +G++ H    +  +  ++ + +AL DMYA C +M                  
Sbjct: 173 AGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQM------------------ 214

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
                        DMA + FD +  ++ V W A+I G+ R       L  F EMQ +   
Sbjct: 215 -------------DMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFG 261

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
              FT  S+ +A A +GALE G WV  ++ K+  K   FV N ++ MY K G +  A++V
Sbjct: 262 ATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKV 321

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F  + ++D  TW  M+   A  G G +++  F ++ +  I  +++T++ VL+AC+H G+V
Sbjct: 322 FDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLV 381

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
            EG++YF DM   + +EP   HY   VDLLGRAG L EAL  +  MPM+P + VWGALLG
Sbjct: 382 KEGKQYF-DMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLG 440

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           ACR+H++A++ + AA  + ELDP++    VLL NIYA+  +WD+   +R+M+   G+KK 
Sbjct: 441 ACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKE 500

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
           P CS +E+   VH FVA D +HP+++EIY   +E+ + +K  GY+P+   V L + E+++
Sbjct: 501 PACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQER 560

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           E  +  HSEK+A+AF LI+   G TIRI+KN+R+C DCH   + VS V+ RE++VRD  R
Sbjct: 561 ETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNR 620

Query: 706 FHHFKHGSCSCKDYW 720
           FHHF +GSCSC DYW
Sbjct: 621 FHHFSNGSCSCGDYW 635



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 186/409 (45%), Gaps = 43/409 (10%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           +I+     +++   + IHS   +  L  +  + N L+   C + G +  A  VF  IP  
Sbjct: 68  IITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYC-KCGAVSDARHVFDGIPTR 126

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            V  W  +I GY++ D     + +  DML++  RP  +TF   LK          G+++H
Sbjct: 127 DVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMH 186

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
              +K+  D  V+V +AL+  Y  C ++DMA  +FD     + V+WNA+ +G+ R    +
Sbjct: 187 ALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGE 246

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
            T   F EM+R G   T  T   V SA A++  L+ G+  H ++ +        + N + 
Sbjct: 247 TTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTIL 306

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
            MYA  G M  A ++F  +  +D+++W  ++T +   G                      
Sbjct: 307 GMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLG-------------------- 346

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
                      +EA+  F E++   I+ ++ T +S+LTAC++ G ++ G   K Y D  K
Sbjct: 347 -----------KEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEG---KQYFDMMK 392

Query: 379 VKN-----DIFVGNALIDMYCKCGDVEKAQ-RVFREMLRKDKFTWTAMI 421
             N     D +V  + +D+  + G +++A   VF+  +      W A++
Sbjct: 393 DYNVEPEIDHYV--SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALL 439


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/598 (36%), Positives = 349/598 (58%), Gaps = 38/598 (6%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG--DMKYACKVFRKIPRPS- 79
           + +C+S+  LKQIH   IK   L+ P +  KL+    S     D+ Y   +       + 
Sbjct: 13  LNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHSHDAQ 72

Query: 80  --VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
             + L N +I+  SR   + + +    +ML   + PD +T P +LK       +  G+++
Sbjct: 73  FCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQI 132

Query: 138 HCHVLKFGFDS-SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           H   +K G    +V+V N L+  Y +CG +   + +FD     D+V+W  +   + +   
Sbjct: 133 HARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGL 192

Query: 197 FDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE-CKIVPNLILEN 255
           +    + F EM    +     T+V+VLSAC+ L DL++G++ H Y++    +  ++ + N
Sbjct: 193 YSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGN 252

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           AL DMY  C ++  A ++F                               D+MP ++ V 
Sbjct: 253 ALLDMYLKCDDLNSAYKVF-------------------------------DEMPVKNVVT 281

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           W AMI G     R+REAL  FR MQ   ++PDE T+V +L +CANLG LE+G+WV  Y+ 
Sbjct: 282 WNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMR 341

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
           +N +  D FVGNAL+DMY KCG +++A RVF  M R+D +++TAMI GLA++G  + +  
Sbjct: 342 RNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQ 401

Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
           +FS+M R  I P+EVT++G+L AC+H G+V EG++YF  M+ ++ + P   HYGCM+DLL
Sbjct: 402 VFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLL 461

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555
           GRAG + EA E+I  M ++P+    GALLGACR+H + ++ E   +++ ELDPD E  Y+
Sbjct: 462 GRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYI 521

Query: 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
           L+ N+Y++ +RW +  ++R+ + ++ ++KTPGCS+IE++GVVHEF  GDKSHP++K I
Sbjct: 522 LMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSHPRSKVI 579



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 216/439 (49%), Gaps = 43/439 (9%)

Query: 18  PLI-SPIETCESMHQLKQIHSQTIKLGLLT-NPTVQNKLVTF--CCSEKGDMKYACKVFR 73
           PL+   +   + + + +QIH+++IK G++  N  V N L+     C    D++   KVF 
Sbjct: 114 PLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQ---KVFD 170

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           + P   +  W T+I+ +++   +   V  +++M    +R D  T   +L   +    +  
Sbjct: 171 ECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNL 230

Query: 134 GKELHCHVLKF-GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           G+++H ++  +    + VFV NAL+  Y  C +++ A  +FD     +VVTWNAM SG  
Sbjct: 231 GQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLA 290

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
              ++ E    F  M+ KGV P  VT+V VL++CA L  L++GK  H Y++   I+ +  
Sbjct: 291 YQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKF 350

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + NAL DMYA CG +  A  +F ++K +DV S+TA++ G    G+ + A Q F +M    
Sbjct: 351 VGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEM---- 406

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVK 371
                           FR             I P+E T + +L AC++ G +  G ++  
Sbjct: 407 ----------------FR-----------VGIEPNEVTFLGLLMACSHGGLVAEGKKYFF 439

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHG 430
              DK K++        +ID+  + G V++A+ +  +M +R D F   A++    I+G+ 
Sbjct: 440 QMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNV 499

Query: 431 DKSLDMFSQMLRASIIPDE 449
           D    +  ++    + PDE
Sbjct: 500 DIGESVMQKL--TELDPDE 516


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/684 (34%), Positives = 361/684 (52%), Gaps = 38/684 (5%)

Query: 41  KLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKN 98
           +LG + N  + N L+     C    D   A  VF  I   +V  W  M+  ++       
Sbjct: 3   ELGWIRNRFLCNLLIDLYTKCDRFDD---ALAVFHGIQSKNVFSWTMMLAAFAENRDFDR 59

Query: 99  GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158
             L +  ML   + P        L   T    +  G+ +   +L  G +    VQ AL+S
Sbjct: 60  CWLFFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVS 119

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y   G    A  +F      DVV W+AM + Y R     E   LF +M+  GV P  VT
Sbjct: 120 LYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVT 179

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           +V  L ACA L DL  G   H+ V+   I   +++  AL ++Y  CG             
Sbjct: 180 LVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCG------------- 226

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
                             +++ A + F Q+ E++ V W+A+   Y R +R R+A+ +   
Sbjct: 227 ------------------RIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHR 268

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWV--KTYIDKNKVKNDIFVGNALIDMYCKC 396
           M    + P+  T VS+L ACA + AL+ G  +  + ++    +++D++V  AL++MY KC
Sbjct: 269 MDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKC 328

Query: 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           G++  A  +F ++   D   W ++I   A +G  +K+L++F +M    + P  +T+  VL
Sbjct: 329 GNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVL 388

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
            AC+H GM+D+GR++F      HGI P   H+GCMVDLLGRAG + ++ +++ +MP +P+
Sbjct: 389 FACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPH 448

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
            + W A LGACR +R+ + A  AA+ + +LDP   A YVLL N+YA   RW +   +RQ 
Sbjct: 449 PVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQA 508

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           +      K  G S IE+   VHEF++GD  HP+  EI+ +L  +T  +K  GY+PD   V
Sbjct: 509 MQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMV 568

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             DV +E KE  V  HSEKLAMAF L+++  G  IR+VKNLR+C DCH  +K +S + +R
Sbjct: 569 LHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNR 628

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           E++VRD  RFH F++G+CSC DYW
Sbjct: 629 EIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 138/337 (40%), Gaps = 34/337 (10%)

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           ++E   + N  L N L D+Y  C     AL +F  I++K+V SWT ++  +         
Sbjct: 1   MEELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAE------- 53

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                    RD                F      FR M    I P E  I   L+AC + 
Sbjct: 54  --------NRD----------------FDRCWLFFRGMLLQGINPGEVGISIFLSACTDA 89

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
             + +G  ++  I    ++ +  V  AL+ +Y K G    A  VF  M  +D   W+AM+
Sbjct: 90  REITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMV 149

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
              A NGH  ++L +F QM    + P++VT V  L AC   G +  G      +  Q GI
Sbjct: 150 AAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQ-GI 208

Query: 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA-CRVHRDAEMAEMAA 540
           +        +V+L G+ G +  A E    + ++ N + W A+  A  R  R+ +   +  
Sbjct: 209 QSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VEKNVVAWSAISAAYARNDRNRDAIRVLH 267

Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
           +  LE    N   +V + +  AA       R + + I
Sbjct: 268 RMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERI 304


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/587 (37%), Positives = 328/587 (55%), Gaps = 32/587 (5%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
            + +H H+ +       F+ N+LI  YC CG V  AR +FD     DVV+W  + +GY +
Sbjct: 79  ARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQ 138

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                E   L  +M R    P   T   +L A        +G++ H    +     ++ +
Sbjct: 139 NYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYV 198

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            +AL DMYA C +M                               DMA   FD++  ++ 
Sbjct: 199 GSALLDMYARCEQM-------------------------------DMAIMVFDRLVSKNE 227

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           V W A+I G+ R       L  F EMQ +      FT  S+ +A A +GALE G WV  +
Sbjct: 228 VSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAH 287

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           + K+  K   FVGN ++ MY K G +  A++VF  M ++D  TW  M+  LA  G G ++
Sbjct: 288 LIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEA 347

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           +  F ++ +  I  +++T++ VL+AC+H G+V EG+ YF DM   + ++P   HY   VD
Sbjct: 348 VAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYF-DMMKDYNVQPEIDHYVSFVD 406

Query: 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
           LLGRAG L EAL  +  MPM+P + VWGALLGACR+H++A+M + AA  + ELDPD+   
Sbjct: 407 LLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGP 466

Query: 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEI 613
            VLL NIYA+  +W++   +R+M+   G+KK P CS +++   VH FVA D +HP++ +I
Sbjct: 467 PVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDI 526

Query: 614 YLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRI 673
           Y   +E+   +K  GY+P+ + V L + E+++E  +  HSEK+A+AF LI+   G +IRI
Sbjct: 527 YRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRI 586

Query: 674 VKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +KN+R+C DCH   K VS V+ RE++VRD  RFHHF  GSCSC DYW
Sbjct: 587 MKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 186/408 (45%), Gaps = 42/408 (10%)

Query: 21  SPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S I  C     L   + IH+   +  L  +  + N L+   C + G +  A  VF K+P 
Sbjct: 65  SIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYC-KCGAVSDARHVFDKMPS 123

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
             V  W  +I GY++       + +  DML++  RP+ +TF  LLK          G+++
Sbjct: 124 RDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQM 183

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H   +K+ +D  V+V +AL+  Y  C ++DMA  +FD     + V+WNA+ +G+ R    
Sbjct: 184 HALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADG 243

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           + T   F EM+R G   T  T   + SA A++  L+ G+  H ++ +        + N +
Sbjct: 244 ETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTM 303

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
             MYA  G M  A ++F  +  +D+++W  ++T     G                     
Sbjct: 304 LGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLG------------------- 344

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
                       +EA+  F E++   I+ ++ T +S+LTAC++ G ++ G   K Y D  
Sbjct: 345 ------------KEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEG---KHYFDMM 389

Query: 378 K---VKNDIFVGNALIDMYCKCGDVEKAQ-RVFREMLRKDKFTWTAMI 421
           K   V+ +I    + +D+  + G +++A   VF+  +      W A++
Sbjct: 390 KDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALL 437



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 130/298 (43%), Gaps = 4/298 (1%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFRKI 75
           T L+     C      +Q+H+  +K     +  V + L+  +   E+ DM  A  VF ++
Sbjct: 165 TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDM--AIMVFDRL 222

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              +   WN +I G++R    +  ++ + +M ++     ++T+  +   F R  A+E G+
Sbjct: 223 VSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGR 282

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
            +H H++K G   + FV N ++  Y   G +  AR +FD   K D+VTWN M +   +  
Sbjct: 283 WVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYG 342

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
              E    F E+ + G+    +T + VL+AC+    +  GK     +K+  + P +    
Sbjct: 343 LGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYV 402

Query: 256 ALTDMYAACGEMGFAL-EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +  D+    G +  AL  +F          W A++          M +   D + E D
Sbjct: 403 SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELD 460



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 2/200 (1%)

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           +    + P      SI+ ACA    L     +  ++ ++ +  D F+ N+LI MYCKCG 
Sbjct: 51  LHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGA 110

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           V  A+ VF +M  +D  +WT +I G A N    +++ +   MLRA   P+  T+  +L A
Sbjct: 111 VSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKA 170

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
               G    G +  A + +++  + +      ++D+  R   ++ A+ V   +  K N +
Sbjct: 171 TGACGGCSIGEQMHA-LAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSK-NEV 228

Query: 519 VWGALLGACRVHRDAEMAEM 538
            W AL+       D E   M
Sbjct: 229 SWNALIAGFARKADGETTLM 248


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/591 (37%), Positives = 350/591 (59%), Gaps = 32/591 (5%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A+  G+++H H++K  +   V++   LI  Y  CG +D AR + D   + +VV+W AM S
Sbjct: 56  ALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMIS 115

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
           GY +  +  E  +LF  M R G      T+  VL++C   + +   ++ H  V +     
Sbjct: 116 GYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFES 175

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ + ++L DMY   G          NI+                      AR+ FD +P
Sbjct: 176 HMFVGSSLLDMYGKSG----------NIQE---------------------ARKVFDMLP 204

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ERD V  TA+I GY ++    EAL LFR++ +S ++ +  T  ++LT+ + L +L  G+ 
Sbjct: 205 ERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQ 264

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           V   I + ++   I + N+LIDMY KCG +  ++RVF  M ++   +W AM++G   +G 
Sbjct: 265 VHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGI 324

Query: 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG 489
           G + + +F  M    + PD VT + VLS C+H G+VDEG + F  +  +     +  HYG
Sbjct: 325 GQEVVQLFRTMTE-EVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYG 383

Query: 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549
           C++DLLGR+G L +AL++I++MP +P   +WG+LLGACRVH +  + E+ A+++L+++P 
Sbjct: 384 CVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPG 443

Query: 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQ 609
           N   YV+L NIYAA   W +   +R+++L+  + K P  S I ++ V+H F + ++ HP+
Sbjct: 444 NAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPR 503

Query: 610 TKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
            K+I  K+ E+  D+K  G++PD+S V  DV +E KER +  HSEKLA+ FGL+++ PG+
Sbjct: 504 KKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGL 563

Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           TI+++KNLR+CVDCH  AK VS VY RE+ +RDK RFH  K G+C+C DYW
Sbjct: 564 TIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 197/412 (47%), Gaps = 39/412 (9%)

Query: 3   SNSSISPPSTLTQETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC 59
           + SS++ P    +     + I  C   +++ + +Q+H+  +K        +  +L+    
Sbjct: 28  AASSLAVPGADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYV 87

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
              G +  A  V   +P  +V  W  MI GYS+   H   + +++ ML++  + + +T  
Sbjct: 88  -RCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLA 146

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
            +L       +++  +++H  V+K  F+S +FV ++L+  Y   G +  AR +FD+  + 
Sbjct: 147 TVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPER 206

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
           D V+  A+ SGY ++   DE   LF ++   G+    VT   +L++ + L  L+ GK+ H
Sbjct: 207 DTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVH 266

Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
             +   ++   ++L+N+L DMY+ CG++ ++  +F N+  +  ISW A++ GY       
Sbjct: 267 GLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGY------- 319

Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
             R    Q                       E + LFR M T  ++PD  T++++L+ C+
Sbjct: 320 -GRHGIGQ-----------------------EVVQLFRTM-TEEVKPDSVTLLAVLSGCS 354

Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGN--ALIDMYCKCGDVEKAQRVFREM 409
           + G ++ G  +   I K +    I +G+   +ID+  + G ++KA  +   M
Sbjct: 355 HGGLVDEGLDIFDLIVKEQ-NAVIHIGHYGCVIDLLGRSGQLQKALDLIEHM 405



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           + +TAC    AL  G  V  ++ K + +  +++   LI +Y +CG ++ A+ V   M  +
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPER 105

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC-THTGMVDEGREY 471
           +  +WTAMI G + +G   ++L++F +MLRA    +E T   VL++C  H  +  +  E 
Sbjct: 106 NVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSI--QQVEQ 163

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
              + ++   E +      ++D+ G++G++ EA +V   +P
Sbjct: 164 VHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLP 204


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/598 (37%), Positives = 346/598 (57%), Gaps = 44/598 (7%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           ++  G++LH  +L  G      +   L+  Y  CG+V  AR +FD   K +V  WN +  
Sbjct: 77  SLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIR 136

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
            Y R    +   +L+  M   GV P + T  LVL ACA L DL+ G+  H+ V   +   
Sbjct: 137 AYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQ 196

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ +   + DMYA CG                                VD AR  FD + 
Sbjct: 197 DVFVCAGVVDMYAKCG-------------------------------CVDDARAVFDGIA 225

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE- 368
            RD V+W +MI  Y +  R  EAL L R+M  + I P   T+VS ++A A+  AL  G  
Sbjct: 226 VRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRE 285

Query: 369 -----WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
                W + +  ++K+K       +L+DMY K G V+ A+ +F ++++++  +W AMI G
Sbjct: 286 LHGFGWRRGFGLQDKLKT------SLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICG 339

Query: 424 LAINGHGDKSLDMFSQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
             ++GH D++L +F++M   A + PD +T+VGVLSAC H GMV+E +E+F  M   + I+
Sbjct: 340 YGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIK 399

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   HY C++D+LG  G   EA ++IK M ++P+S +WGALL  C++H++ E+ E+A ++
Sbjct: 400 PTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQK 459

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           ++EL+P++   YV L NIYA   +W+    +R+++ +RG+KK   CS IE+ G  H F+ 
Sbjct: 460 LIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLV 519

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
           GD SHP++ EIY +L+ +   +   GY+PDI  VF +V +++K   V  HSE+LA+AFGL
Sbjct: 520 GDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGL 579

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IS+ PG  + + KNLR+C DCH + KL+S +  RE+I+RD  R+HHF +G CSCKDYW
Sbjct: 580 ISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 192/423 (45%), Gaps = 35/423 (8%)

Query: 8   SPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           S P      T ++       S+   +Q+H + +  GL  +  +  KLV    +  G + +
Sbjct: 57  SSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAA-CGQVGH 115

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A ++F  +P+ +V LWN +I+ Y+R    +  V +Y  M++  V PDN+T+P +LK    
Sbjct: 116 ARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAA 175

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
            + +E G+E+H  V    +   VFV   ++  Y  CG VD AR +FD     D V WN+M
Sbjct: 176 LLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSM 235

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
            + Y +  +  E   L  +M   G+ PT  T+V  +SA A    L  G+  H +      
Sbjct: 236 IAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGF 295

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
                L+ +L DMYA  G +  A  +F  +  ++++SW A++ GY   G  D        
Sbjct: 296 GLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHAD-------- 347

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALEL 366
                                  EAL LF +M+  + + PD  T V +L+AC + G +E 
Sbjct: 348 -----------------------EALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEE 384

Query: 367 G-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGL 424
             E+    ++   +K  +     +ID+    G  E+A  + + M +  D   W A++ G 
Sbjct: 385 AKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGC 444

Query: 425 AIN 427
            I+
Sbjct: 445 KIH 447



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 148/357 (41%), Gaps = 40/357 (11%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L +C     L  G++ H  +    + P+ +L   L D+YAACG++G A  +F  +  ++
Sbjct: 68  ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRN 127

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V  W  ++  Y   G  +                                A+ L+R M  
Sbjct: 128 VFLWNVLIRAYAREGPRE-------------------------------AAVRLYRGMVE 156

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             + PD FT   +L ACA L  LE G  V   +   +   D+FV   ++DMY KCG V+ 
Sbjct: 157 HGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDD 216

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A+ VF  +  +D   W +MI     NG   ++L +   M    I P   T V  +SA   
Sbjct: 217 ARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAAD 276

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
              +  GRE       + G    +     +VD+  ++G +  A  + + + MK   + W 
Sbjct: 277 AAALPRGRELHG-FGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQL-MKRELVSWN 334

Query: 522 ALLGACRVHRDAEMAEMAAKQI---LELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           A++    +H  A+ A     ++    ++ PDN    +    + +ACN      E ++
Sbjct: 335 AMICGYGMHGHADEALALFNKMKGDAQVTPDN----ITFVGVLSACNHGGMVEEAKE 387



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 88/177 (49%), Gaps = 6/177 (3%)

Query: 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR 411
            SIL +C   G+L  G  +   +  + +  D  +   L+D+Y  CG V  A+R+F  M +
Sbjct: 66  TSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPK 125

Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
           ++ F W  +I   A  G  + ++ ++  M+   + PD  TY  VL AC     ++ GRE 
Sbjct: 126 RNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREV 185

Query: 472 FADMTIQHGIEPNEAHYGC--MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
              ++   G    +  + C  +VD+  + G +++A  V   + ++ +++VW +++ A
Sbjct: 186 HQRVS---GTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVR-DAVVWNSMIAA 238


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/639 (37%), Positives = 363/639 (56%), Gaps = 25/639 (3%)

Query: 18  PLISPIETCESMHQLKQIHSQT-IKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           P++  I  C+++  LK IH++  I+  + ++  V NKL+    S  G   YA KVF +I 
Sbjct: 4   PILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLY-SRFGATDYAHKVFDEIT 62

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           +P+  LW ++I GY     +     +++ M +  +   N+T   +LK   R    + G+ 
Sbjct: 63  QPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQA 122

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           ++  VLK+GF   + VQN+++  +  C +VD AR  FD   + D+V+WN M SGY    +
Sbjct: 123 VYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDR 182

Query: 197 FDETRKLFGEMERKGVLPTSVTI-----------VLVLSACAKLKDL-----------DV 234
            D  RK F  M  + V+  +  I             VL     +KDL           D+
Sbjct: 183 VDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDI 242

Query: 235 GKRAHRYVKECKI-VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
           G   +  +   K+ + +    N +   +   GE+  A + F  + NK+VISW  ++ GYI
Sbjct: 243 GDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYI 302

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
             G  + AR  FDQMP ++ V W+ MI GY R  +  +AL LF   +  +I+PDE  I+ 
Sbjct: 303 KNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILG 362

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           I++AC+ LG ++  E +        + +D+ V  +LIDMY KCG +EKA ++F     KD
Sbjct: 363 IISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKD 422

Query: 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
              ++ MI  LA +G G  ++ +F +M RA+I PD VT++GVL+AC H G+VDEGR+YF 
Sbjct: 423 LLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFK 482

Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDA 533
            MT + GI+P+E HY C+VDLLGR G L EA  +I+NMP+ P+S+VWGALL ACRVH + 
Sbjct: 483 QMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNV 542

Query: 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEM 593
           ++AE+AA ++ +++PDN   Y+LL NIYAA  RW +  ++R  I +  ++K  G S IE+
Sbjct: 543 QLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIEL 602

Query: 594 NGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD 632
           + VVHEFV GD SH  +  I L L  +  D+K  GY+ D
Sbjct: 603 SHVVHEFVMGDMSHTDSDSISLILYLLCEDMKLSGYLID 641


>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
          Length = 804

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/694 (36%), Positives = 379/694 (54%), Gaps = 72/694 (10%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS- 91
           + +H   +K G  ++  V N LV    S    M  A +VF ++P+  V  W +++KGY+ 
Sbjct: 177 ENVHGMVVKDGYESDIFVGNSLVNMY-SIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAM 235

Query: 92  RIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           R + +   +  + DML  D V+P+      +L       A++ GK +H ++ K     S 
Sbjct: 236 RGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSS 295

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            +  ALI  Y  CG +D AR +FD  +K D++TW +M SG        E    F EM  +
Sbjct: 296 NISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAE 355

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G  P  +T++ VL+ C+           H  + E +IV  +++++            GF 
Sbjct: 356 GFKPDDITLLGVLNGCS-----------HSGLVEEEIVHGMVVKS------------GFE 392

Query: 271 LEIF-GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
             ++ GN     VI+  ++        +++ AR+ F+QM ERD   WT+++ GY +    
Sbjct: 393 SNLYVGN----SVINMCSVF------ARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEM 442

Query: 330 -REALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
            R +LT F  M   + + P+E  +V +L+ACA+LGAL+ G W+  YIDK  ++    +  
Sbjct: 443 DRASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNIST 502

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           ALIDMY KCG ++ A RVF  + ++D  ++T+MI GL+ +G G  +L             
Sbjct: 503 ALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDAL------------- 549

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
                               G    A+M    GI P   HYGC +DLLGRAG+L  ALEV
Sbjct: 550 -------------------RGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEV 590

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL-DPDNEAVYVLLCNIYAACNR 566
           +K MPM+P+ ++W ALL A R+H +  + E     I +L   D+    VLL N+YA+  R
Sbjct: 591 VKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGR 650

Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
           W+   E+R++++DR  + +PGCS IE+NG+VHEF   D+ HPQ  EI  KL+E+   L  
Sbjct: 651 WERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQ 710

Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
           +GY  +  +V  D+ EE+KE+AV  HSEKLA+AFGL+S+ PG  IRIVKNLR C DCH  
Sbjct: 711 IGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSA 770

Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            K +S VY RE++VRD++RFH F  G CSCKD+W
Sbjct: 771 LKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 804



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/523 (28%), Positives = 267/523 (51%), Gaps = 49/523 (9%)

Query: 3   SNSSISPPS-----TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
           ++S+I  PS     +L   +  +  ++   S+ Q+KQIH+Q +  GL  N ++   L+  
Sbjct: 37  TSSAIWEPSGTSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHS 96

Query: 58  CCSEKGDMKYACKVFRKIPR-PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP--- 113
               + ++ +A  VF + P  P   +WN MI+ YS+  S +  + ++  ML    RP   
Sbjct: 97  YIGCR-NLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHG-RPTSA 154

Query: 114 DNYTFPFLLKGFTRDIAVE-FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           D YTF F+    +R   +  +G+ +H  V+K G++S +FV N+L++ Y +   +  A+ +
Sbjct: 155 DKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRV 214

Query: 173 FDVSYKDDVVTWNAMFSGYK-RVKQFDETRKLFGEME-RKGVLPTSVTIVLVLSACAKLK 230
           FD   + DV+TW ++  GY  R + ++E  + F +M     V P    +V +LSACA L 
Sbjct: 215 FDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLG 274

Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT 290
            LD GK  H Y+ + +I+ +  +  AL DMYA CG +  A  +F  +  +D+++WT++++
Sbjct: 275 ALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMIS 334

Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
           G    G   +  +           LWT                  F EM     +PD+ T
Sbjct: 335 GLSMHG---LGAE----------CLWT------------------FSEMLAEGFKPDDIT 363

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           ++ +L  C++ G +E  E V   + K+  +++++VGN++I+M      +E A++VF +M 
Sbjct: 364 LLGVLNGCSHSGLVE-EEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMS 422

Query: 411 RKDKFTWTAMIVGLAINGHGDK-SLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEG 468
            +D F+WT+++ G A +G  D+ SL  F  ML    + P+E   V VLSAC H G +D+G
Sbjct: 423 ERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQG 482

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
             +      + GI  +      ++D+  + G ++ A  V   +
Sbjct: 483 -NWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGI 524



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 149/493 (30%), Positives = 244/493 (49%), Gaps = 50/493 (10%)

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
           P + TF  LLK   +  ++   K++H  V+  G   +  +   LI +Y  C  +  AR +
Sbjct: 53  PSHSTFVQLLK---KRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIV 109

Query: 173 FD-VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV---TIVLVLSACAK 228
           FD        + WN M   Y +     E+  LF +M   G  PTS    T   V +AC++
Sbjct: 110 FDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHG-RPTSADKYTFTFVFTACSR 168

Query: 229 LKDL-DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287
              L   G+  H  V +     ++ + N+L +MY+    M                    
Sbjct: 169 HPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRM-------------------- 208

Query: 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGY-LRVNRFREALTLFREMQTSN-IR 345
                     VD A++ FD+MP+RD + WT+++ GY +R   + EAL  F +M   + ++
Sbjct: 209 ----------VD-AKRVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVK 257

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           P+E  +VSIL+ACA+LGAL+ G+W+  YIDKN++     +  ALIDMY KCG ++ A+RV
Sbjct: 258 PNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRV 317

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F  + ++D  TWT+MI GL+++G G + L  FS+ML     PD++T +GVL+ C+H+G+V
Sbjct: 318 FDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLV 377

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           +E  E    M ++ G E N      ++++      + +A +V   M  + +   W +LLG
Sbjct: 378 EE--EIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSER-DVFSWTSLLG 434

Query: 526 ACRVHRDAEMAEMAAKQILELDP---DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
               H + + A +     +  D     NEAV V + +  A     D    +   I   GI
Sbjct: 435 GYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGI 494

Query: 583 KKTPGCS--MIEM 593
           +++   S  +I+M
Sbjct: 495 RQSSNISTALIDM 507


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/633 (35%), Positives = 351/633 (55%), Gaps = 33/633 (5%)

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
             +SR  S  + + ++   L    RPD+ TF   L    R   +  G+ +       G+ 
Sbjct: 82  AAHSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYK 140

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
             VFV ++L+  Y   G +  A  +FD   + D VTW+ M +G+    Q  +  +++  M
Sbjct: 141 DDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM 200

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
              GV    V ++ V+ AC   +++ +G   H ++    +  +++   +L DMYA  G +
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  +FG + +++ +SW+A+++G+   GQ D                            
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSD---------------------------- 292

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
              EAL LFR MQ S I+PD   +VS L AC+N+G L+LG  V  +I + +   +  +G 
Sbjct: 293 ---EALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR-RFDFNCILGT 348

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           A IDMY KCG +  AQ +F  +  +D   W AMI     +G G  +L +F +M    + P
Sbjct: 349 AAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRP 408

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D  T+  +LSA +H+G+V+EG+ +F  M     I P E HY C+VDLL R+G + EA ++
Sbjct: 409 DHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDL 468

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           + +M  +P   +W ALL  C  ++  E+ E  A  ILEL PD+  V  L+ N+YAA  +W
Sbjct: 469 LTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKW 528

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           D  R++R+++ D G KK PGCS IE+ G  H F+  D+SHPQ +EI  K+ ++  +++ +
Sbjct: 529 DKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRKM 588

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           GY+P    V+ D+ EE KE+ +  HSEKLA+AFGL+++GPG  + I+KNLR+C DCH   
Sbjct: 589 GYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAI 648

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           K +S + DRE++VRD  RFHHFK G CSC+DYW
Sbjct: 649 KYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 200/456 (43%), Gaps = 44/456 (9%)

Query: 9   PPSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM 65
           PP+     T     +  C  +  L+    +  +    G   +  V + L+    +  G M
Sbjct: 101 PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLY-ARWGAM 159

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             A KVF ++PR     W+TM+ G+       + + +Y  M +  V+ D      +++  
Sbjct: 160 GDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQAC 219

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
           T    V  G  +H H+L+ G    V    +L+  Y   G +D+A  +F +    + V+W+
Sbjct: 220 TAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWS 279

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           AM SG+ +  Q DE  +LF  M+  G+ P S  +V  L AC+ +  L +G+  H ++   
Sbjct: 280 AMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR- 338

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT--GYINRGQVDMARQ 303
           +   N IL  A  DMY+ CG +  A  +F  I ++D+I W A++   G   RGQ      
Sbjct: 339 RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQ------ 392

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
                                      +ALTLF+EM  + +RPD  T  S+L+A ++ G 
Sbjct: 393 ---------------------------DALTLFQEMNETGMRPDHATFASLLSALSHSGL 425

Query: 364 LELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT-WTAMI 421
           +E G+ W    ++  K+         L+D+  + G VE+A  +   M  +     W A++
Sbjct: 426 VEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALL 485

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            G   N   +    +   +L   + PD+V  + ++S
Sbjct: 486 SGCLNNKKLELGESIADNIL--ELQPDDVGVLALVS 519



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 155/385 (40%), Gaps = 85/385 (22%)

Query: 253 LENALTDMYAACGEMGF--------------------------------ALEIFGNI--- 277
           L ++L   YA  G++                                  AL +F  +   
Sbjct: 44  LISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGSPASALRVFRALPPA 103

Query: 278 KNKDVISWTAIVTGYIN----RGQVDMARQYFDQMPERD----------YVLWTAMID-- 321
              D  ++T  ++        RG   +  + FD   + D          Y  W AM D  
Sbjct: 104 ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAV 163

Query: 322 -------------------GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                              G++   +  +A+ ++R M+   ++ DE  ++ ++ AC    
Sbjct: 164 KVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAAR 223

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            + +G  V  ++ ++ ++ D+    +L+DMY K G ++ A RVF  M+ ++  +W+AMI 
Sbjct: 224 NVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMIS 283

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A NG  D++L +F  M  + I PD    V  L AC++ G +  GR         HG  
Sbjct: 284 GFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSV-------HGFI 336

Query: 483 PNEAHYGCM-----VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
                + C+     +D+  + G L  A +++ NM    + I+W A++  C  H   + A 
Sbjct: 337 VRRFDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGRGQDAL 395

Query: 538 MAAKQILE--LDPDNEAVYVLLCNI 560
              +++ E  + PD+     LL  +
Sbjct: 396 TLFQEMNETGMRPDHATFASLLSAL 420


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/648 (34%), Positives = 352/648 (54%), Gaps = 62/648 (9%)

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
            D   S +  +   F  LL+    + ++  GK+LH  ++  G  S  F+ N L++ Y  C
Sbjct: 41  FDRFSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKC 100

Query: 164 GEVDMA-------------------------------RGIFDVSYKDDVVTWNAMFSGYK 192
           G++D A                               R +FD   + +V TWNAM +G  
Sbjct: 101 GQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLI 160

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           + +  +E   LF  M   G LP    +  VL  CA L+ L  G++ H YV++C    NL+
Sbjct: 161 QFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLV 220

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           + ++L  MY  CG +G                                  +    MP ++
Sbjct: 221 VVSSLAHMYMKCGSLG-------------------------------EGERLIRAMPSQN 249

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V W  +I G  +     E L  +  M+ +  RPD+ T VS++++C+ L  L  G+ +  
Sbjct: 250 VVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHA 309

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            + K      + V ++LI MY +CG +E + +VF E    D   W++MI     +G G +
Sbjct: 310 EVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVE 369

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           ++D+F+QM +  +  ++VT++ +L AC+H G+ ++G ++F  M  ++G++P   HY CMV
Sbjct: 370 AIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMV 429

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLLGR G + EA  +I++MP+K + I W  LL AC++H+  EMA   ++++  LDP +  
Sbjct: 430 DLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPV 489

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVLL NI+A+  RWD+  ++R+ + DR +KK PG S +E+   +H+F  GDKSHP++ E
Sbjct: 490 PYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVE 549

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I   L E+TS++K  GY+PDI  V  D+  EDKE ++  HSEKLA+AF L+ +  G  IR
Sbjct: 550 IASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIR 609

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++KNLR+C DCH   K +S + +RE+IVRD +RFHHFK+G CSC DYW
Sbjct: 610 VIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 187/394 (47%), Gaps = 36/394 (9%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD   A K+F ++P  +V  WN M+ G  + + ++ G+ ++  M +    PD +    +L
Sbjct: 132 GDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVL 191

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           +G     A+  G+++H +V K GF+ ++ V ++L   Y  CG +     +       +VV
Sbjct: 192 RGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVV 251

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
            WN + +G  +    +E    +  M+  G  P  +T V V+S+C++L  L  G++ H  V
Sbjct: 252 AWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEV 311

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +      + + ++L  MY+ CG + ++L++F   +N DV+ W++++  Y   G      
Sbjct: 312 IKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHG------ 365

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                                    R  EA+ LF +M+   +  ++ T +S+L AC++ G
Sbjct: 366 -------------------------RGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCG 400

Query: 363 ALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAM 420
             E G ++    ++K  VK  +     ++D+  + G VE+A+ + R M ++ D  TW  +
Sbjct: 401 LKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTL 460

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYV 453
           +    I+   + +  +  ++ R  + P D V YV
Sbjct: 461 LSACKIHKKTEMARRISEEVFR--LDPRDPVPYV 492



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 19  LISPIETCE---SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
            +S I +C    ++ Q +QIH++ IK G     +V + L++   S  G ++Y+ KVF + 
Sbjct: 288 FVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMY-SRCGCLEYSLKVFLEC 346

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG- 134
               V  W++MI  Y         + ++  M +  +  ++ TF  LL   +     E G 
Sbjct: 347 ENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGI 406

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF-DVSYKDDVVTWNAMFSGYKR 193
           K     V K+G    +     ++      G V+ A  +   +  K DV+TW  + S  K 
Sbjct: 407 KFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKI 466

Query: 194 VKQFDETRKLFGEMER 209
            K+ +  R++  E+ R
Sbjct: 467 HKKTEMARRISEEVFR 482


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/606 (38%), Positives = 353/606 (58%), Gaps = 53/606 (8%)

Query: 135 KELHCHVLKF---GFDSSVFVQNALISTYCLCGEVDM--ARGIFDVSYKDDVVTWNAMFS 189
           K++H   L+       +++F+   ++  Y    + ++  A  +F      +   WN +  
Sbjct: 39  KQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVFHHFPNPNSFMWNTLIR 98

Query: 190 GYKRVKQFD------ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
            Y R    +      E  K    ME K  +P + T  +VL ACA    L  GK+ H +V 
Sbjct: 99  VYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCEGKQVHAHVL 158

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           +     +  + N+L   YA CG +                               D+A +
Sbjct: 159 KHGFESDTYICNSLVHFYATCGCL-------------------------------DLAEK 187

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
            F +M ER+ V W  MID Y +   F  AL +F EMQ  +  PD +T+ S+++ACA LGA
Sbjct: 188 MFYKMSERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVH-DPDGYTMQSVISACAGLGA 246

Query: 364 LELGEWVKTYI----DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
           L LG WV  YI    DKN V +D+ V   L+DMYCK G++E A++VF  M  +D   W +
Sbjct: 247 LSLGLWVHAYILKKCDKNMV-DDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNS 305

Query: 420 MIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           MI+GLA++G    +L+ + +M++   I+P+ +T+VGVLSAC H GMVDEG  +F  MT +
Sbjct: 306 MILGLAMHGEAKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKE 365

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC-RVHRDAEMAE 537
           + +EP   HYGC+VDL  RAG +NEAL ++  M +KP++++W +LL AC + +   E++E
Sbjct: 366 YNVEPRLEHYGCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELSE 425

Query: 538 MAAKQILELDPD--NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
             AKQ+ E +    +  VYVLL  +YA+  RW++   LR+++ ++G+ K PGCS+IE++G
Sbjct: 426 EMAKQVFESEGSVCSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDG 485

Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV-FLDVGEEDKERAVYQHSE 654
           VVHEF AGD +HP+++ IY  + E+   L+ +GY+PD S    +D   + K   +  HSE
Sbjct: 486 VVHEFFAGDTTHPKSENIYKVVTEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSE 545

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           +LA+AFG+++S P V IR+ KNLR+C DCHR+ KL+S +Y+ E+IVRD+ RFHHFK G+C
Sbjct: 546 RLAIAFGILNSKPDVPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTC 605

Query: 715 SCKDYW 720
           SC DYW
Sbjct: 606 SCMDYW 611



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 206/412 (50%), Gaps = 46/412 (11%)

Query: 25  TCESMHQLKQIHSQTIKLGLLTNPTV----QNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           T  +M QLKQIH+QT++     +P       N L  +    + ++ YA +VF   P P+ 
Sbjct: 31  TTITMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVFHHFPNPNS 90

Query: 81  CLWNTMIKGYSRIDS--HKNGVL-IYLDMLKSDVR---PDNYTFPFLLKGFTRDIAVEFG 134
            +WNT+I+ Y+R  +  HK+  + +Y  M+  + +   PDN+TFP +LK      ++  G
Sbjct: 91  FMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCEG 150

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
           K++H HVLK GF+S  ++ N+L+  Y  CG +D+A  +F    + + V+WN M   Y + 
Sbjct: 151 KQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYAKG 210

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KEC--KIVPNL 251
             FD   ++FGEM+R    P   T+  V+SACA L  L +G   H Y+ K+C   +V ++
Sbjct: 211 GIFDTALRMFGEMQRVHD-PDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNMVDDV 269

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
           ++   L DMY   GE+  A ++F ++  +D+ +W +++ G    G+   A  Y+ +M   
Sbjct: 270 LVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRM--- 326

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
                                      ++   I P+  T V +L+AC + G ++ G    
Sbjct: 327 ---------------------------VKVEKIVPNSITFVGVLSACNHRGMVDEGIVHF 359

Query: 372 TYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
             + K   V+  +     L+D++ + G + +A  +  EM ++ D   W +++
Sbjct: 360 DMMTKEYNVEPRLEHYGCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLL 411


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/618 (37%), Positives = 353/618 (57%), Gaps = 37/618 (5%)

Query: 104 LDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           +D L+S  +  D+ T+  L+K    + AV  G  +  H+   G    +F+ N LI+ Y  
Sbjct: 49  MDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVK 108

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
              ++ A  +FD   + +V++W  M S Y + K   +  +L   M R  V P   T   V
Sbjct: 109 FNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSV 168

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L +C  + D+   +  H  + +  +  ++ + +AL D++A  GE   AL +F        
Sbjct: 169 LRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVF-------- 217

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
                                  D+M   D ++W ++I G+ + +R   AL LF+ M+ +
Sbjct: 218 -----------------------DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRA 254

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
               ++ T+ S+L AC  L  LELG  ++ ++   K   D+ + NAL+DMYCKCG +E A
Sbjct: 255 GFIAEQATLTSVLRACTGLALLELG--MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDA 312

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
            RVF +M  +D  TW+ MI GLA NG+  ++L +F +M  +   P+ +T VGVL AC+H 
Sbjct: 313 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHA 372

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G++++G  YF  M   +GI+P   HYGCM+DLLG+AG L++A++++  M  +P+++ W  
Sbjct: 373 GLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LLGACRV R+  +AE AAK+++ LDP++   Y LL NIYA   +WD+  E+R  + DRGI
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK PGCS IE+N  +H F+ GD SHPQ  E+  KL+++   L  +GY+P+ + V  D+  
Sbjct: 493 KKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEG 552

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E  E ++  HSEKLA+AFGL++      IRI KNLR+C DCH   KL S +  R +++RD
Sbjct: 553 EQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRD 612

Query: 703 KTRFHHFKHGSCSCKDYW 720
             R+HHF+ G CSC DYW
Sbjct: 613 PIRYHHFQDGKCSCGDYW 630



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 183/359 (50%), Gaps = 44/359 (12%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A ++F ++P+ +V  W TMI  YS+   H+  + + + ML+ +VRP+ YT+  +L+    
Sbjct: 115 AHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCN- 173

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
              +   + LHC ++K G +S VFV++ALI  +   GE + A  +FD     D + WN++
Sbjct: 174 --GMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
             G+ +  + D   +LF  M+R G +    T+  VL AC  L  L++G +AH ++   K 
Sbjct: 232 IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI--VKY 289

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             +LIL NAL DMY  CG +  AL +F  +K +DVI+W+ +++G        +A+  + Q
Sbjct: 290 DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISG--------LAQNGYSQ 341

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                  EAL LF  M++S  +P+  TIV +L AC++ G LE G
Sbjct: 342 -----------------------EALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378

Query: 368 EW----VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            +    +K     + V+        +ID+  K G ++ A ++  EM    D  TW  ++
Sbjct: 379 WYYFRSMKKLYGIDPVREHY---GCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 134/271 (49%), Gaps = 5/271 (1%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S + +C  M  ++ +H   IK GL ++  V++ L+    ++ G+ + A  VF ++     
Sbjct: 167 SVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVF-AKLGEPEDALSVFDEMVTGDA 225

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            +WN++I G+++       + ++  M ++    +  T   +L+  T    +E G + H H
Sbjct: 226 IVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVH 285

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           ++K+  D  + + NAL+  YC CG ++ A  +F+   + DV+TW+ M SG  +     E 
Sbjct: 286 IVKY--DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEA 343

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILENALTD 259
            KLF  M+  G  P  +TIV VL AC+    L+ G    R +K+   I P       + D
Sbjct: 344 LKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMID 403

Query: 260 MYAACGEMGFALEIFGNIK-NKDVISWTAIV 289
           +    G++  A+++   ++   D ++W  ++
Sbjct: 404 LLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 95/195 (48%), Gaps = 5/195 (2%)

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           A+     +Q+  +  D  T   ++  C +  A+  G  +  ++  N  +  +F+ N LI+
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY K   +  A ++F +M +++  +WT MI   +      K+L++   MLR ++ P+  T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           Y  VL +C   GM D    +     I+ G+E +      ++D+  + G   +AL V   M
Sbjct: 165 YSSVLRSC--NGMSDVRMLHCG--IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220

Query: 512 PMKPNSIVWGALLGA 526
            +  ++IVW +++G 
Sbjct: 221 -VTGDAIVWNSIIGG 234


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/590 (36%), Positives = 341/590 (57%), Gaps = 3/590 (0%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
            K+LH  ++K G +        LI  Y  CG +  A  +FD   + D V W  + S    
Sbjct: 27  AKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNL 86

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV--GKRAHRYVKECKIVPNL 251
                +   +   +  +G+ P       ++ ACA L  + V  GK+ H          + 
Sbjct: 87  SNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDD 146

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
           +++++L DMYA      +   +F +I     ISWTA+++GY   G+   A + F + P +
Sbjct: 147 VVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFK 206

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-PDEFTIVSILTACANLGALELGEWV 370
           +   WTA+I G ++     +AL LF EM+   +   D   + S++ ACAN    ELG+ V
Sbjct: 207 NLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQV 266

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
              +     ++ +F+ NAL+DMY KC DV  A+ +F EM RKD  +WT++IVG A +G  
Sbjct: 267 HCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLA 326

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
           +++L ++  M+ A + P+EVT+VG++ AC+H G+V +GR  F  M    GI P+  HY C
Sbjct: 327 EEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTC 386

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           ++DL  R+GHL+EA  +I+ MP+KP+   W ALL AC+ H + +MA   A  +L+L P++
Sbjct: 387 LLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPED 446

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
            + Y+LL NIYA    W+N   +R+++  + +KK PG S +++      F AG+ S P  
Sbjct: 447 PSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMK 506

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
            EI   + ++ S+++  GY+PD S V LD+ +++KER ++ HSE+LA+A+GL+ + PG T
Sbjct: 507 DEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTT 566

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IRIVKNLR+C DCH + KL+S +  RE+ VRD  R+HHFK G CSC D+W
Sbjct: 567 IRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 198/438 (45%), Gaps = 70/438 (15%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           K++H+Q IK GL  +      L+     + G +K A K+F  +P+     W T++   + 
Sbjct: 28  KKLHAQIIKSGLNHHHPFPKTLID-AYGKCGLLKDALKLFDALPQQDHVAWATVLSACNL 86

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR--DIAVEFGKELHCHVLKFGFDSSV 150
            +       I L +L   ++PD++ F  L+K       + V+ GK+LH   L   F    
Sbjct: 87  SNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDD 146

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR-------VKQFDETR-- 201
            V+++L+  Y      D  R +FD  ++   ++W AM SGY R       ++ F E+   
Sbjct: 147 VVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFK 206

Query: 202 ----------------------KLFGEMERKGV-LPTSVTIVLVLSACAKLKDLDVGKRA 238
                                  LF EM R+GV +   + +  V+ ACA     ++GK+ 
Sbjct: 207 NLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQV 266

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H  V        L + NAL DMYA C ++  A  IF  ++ KDV+SWT+I+ G    G  
Sbjct: 267 HCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLA 326

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
           +                               EALTL+ +M  + ++P+E T V ++ AC
Sbjct: 327 E-------------------------------EALTLYDDMVLAGVKPNEVTFVGLIYAC 355

Query: 359 ANLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFT 416
           +++G +  G  + K+ ++   ++  +     L+D++ + G +++A+ + R M ++ D+ T
Sbjct: 356 SHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPT 415

Query: 417 WTAMIVGLAINGHGDKSL 434
           W A++   A   HG+  +
Sbjct: 416 WAALLS--ACKHHGNTKM 431



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 127/264 (48%), Gaps = 9/264 (3%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR-PDNYTFPFLLKGFT 126
           A ++FR+ P  ++  W  +I G  +  +  + + ++++M +  V   D      ++    
Sbjct: 196 ALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACA 255

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
                E GK++HC V+  G++S +F+ NAL+  Y  C +V  A+ IF    + DVV+W +
Sbjct: 256 NSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTS 315

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR-YVKEC 245
           +  G  +    +E   L+ +M   GV P  VT V ++ AC+ +  +  G+   +  V++ 
Sbjct: 316 IIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDF 375

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQY 304
            I P+L     L D+++  G +  A  +   +  K D  +W A+++   + G   MA + 
Sbjct: 376 GIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRI 435

Query: 305 FDQM----PE--RDYVLWTAMIDG 322
            D +    PE    Y+L + +  G
Sbjct: 436 ADHLLDLKPEDPSSYILLSNIYAG 459


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/444 (46%), Positives = 290/444 (65%), Gaps = 3/444 (0%)

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           +D +  T+++  Y NRG  D AR+ F +MP RD V W  +I    R  R ++AL LF EM
Sbjct: 152 RDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFEEM 211

Query: 340 QT--SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
           +   S   PD+ T + +L AC +LGAL+ GE V  Y +++     + V N+LI MY +CG
Sbjct: 212 RGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCG 271

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            V+KA RVF    +K   TW+AMI GLA NG GD ++  F +M+R+ + PDE T+ GVLS
Sbjct: 272 CVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLS 331

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN-MPMKPN 516
           AC+H+G+VDEG  +F  M  ++G++PN  HYGC+VDL+GRAG L+EA E++ N M + P+
Sbjct: 332 ACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPD 391

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
           + +W  LLGACR+H   ++ E     ++EL       YVLL N YAA   W    E+R++
Sbjct: 392 ATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEVRKL 451

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + ++GI+ TPGC+ +E NG V+EF+A D +HP+  EIY KL+E+   L+  GY+P++S  
Sbjct: 452 MQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNEINKQLRIAGYVPNVSSE 511

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             D+  E KE A+  HSEKLA+AF L+ +     IR+ KNLR+CVDCH   K+ S +Y+R
Sbjct: 512 LHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRVCVDCHNFTKVFSGIYNR 571

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
            VIVRD+TRFHHF+ G CSC DYW
Sbjct: 572 LVIVRDRTRFHHFQGGKCSCNDYW 595



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 181/409 (44%), Gaps = 46/409 (11%)

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN-YTFPFLLKGFTRDIAVEFGKE 136
           PS    N+++    R+ S  +  L +L  +++  R  N +T   LLK      A+   ++
Sbjct: 88  PSTFQCNSIL----RVLSDPSDALRFLRRMRALGRRGNAFTLAILLKP---RCALAHARQ 140

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           LH +V+  G      +  +L++ Y   G+ D AR +F      D V WN + S   R ++
Sbjct: 141 LHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRR 200

Query: 197 FDETRKLFGEMERK--GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
             +  KLF EM  +  G  P  VT +L+L AC  L  LD G++   Y +E      L + 
Sbjct: 201 TKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVR 260

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           N+L  MY+ CG +  A  +F     K V++W+A+++G    G  D               
Sbjct: 261 NSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGD--------------- 305

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTY 373
                           +A++ F EM  S++ PDE T   +L+AC++ G ++ G  +    
Sbjct: 306 ----------------DAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMM 349

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKA-QRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
             +  +K ++     ++D+  + G +++A + V  EM +  D   W  ++    I+GH D
Sbjct: 350 RCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVD 409

Query: 432 KSLDMFSQM--LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
               + S +  L+A    D V  +   +A      V E R+   +  IQ
Sbjct: 410 LGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEVRKLMQEKGIQ 458



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 151/329 (45%), Gaps = 15/329 (4%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMI 87
           ++   +Q+H+  +  G L +  +   L+  C + +GD   A K+F ++P      WN +I
Sbjct: 134 ALAHARQLHANVVAEGHLRDALLATSLMA-CYANRGDGDGARKLFGEMPARDAVAWNVLI 192

Query: 88  KGYSRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
              +R    K+ + ++ +M   D    PD+ T   LL+  T   A++FG+++  +  + G
Sbjct: 193 SCCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHG 252

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG 205
           + + + V+N+LI+ Y  CG VD A  +F  + +  VVTW+AM SG       D+    F 
Sbjct: 253 YGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFE 312

Query: 206 EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENALTDMYAAC 264
           EM R  V P   T   VLSAC+    +D G R    ++ E  + PN+     + D+    
Sbjct: 313 EMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRA 372

Query: 265 GEMGFALEIFGNIKN--KDVISWTAIVTGYINRGQVDMARQYFDQMPE------RDYVLW 316
           G +  A E+  N      D   W  ++      G VD+  +    + E       DYVL 
Sbjct: 373 GLLDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVL- 431

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIR 345
             +++ Y  V  + +   + + MQ   I+
Sbjct: 432 --LLNTYAAVGEWSKVSEVRKLMQEKGIQ 458


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/623 (36%), Positives = 350/623 (56%), Gaps = 37/623 (5%)

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
           L +L  +  P   T   L+    R  ++    ++H  ++  GFD   F+   LI+ +   
Sbjct: 58  LYLLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSEL 117

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
             VD AR +FD + K  +  WNA+F       + ++  +L+  M   GV     T   +L
Sbjct: 118 DTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLL 177

Query: 224 SACAK----LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
            AC      +  L  GK  H ++       ++ +   L DMYA  G + +A  +F     
Sbjct: 178 KACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVF----- 232

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
                                     D+MP ++ V W+AMI  Y +  +  EAL LFREM
Sbjct: 233 --------------------------DEMPVKNVVSWSAMIACYAKNGKPYEALELFREM 266

Query: 340 --QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
              T +  P+  T+VS+L ACA   ALE G+ +  YI +  + + + V +ALI MY +CG
Sbjct: 267 MLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCG 326

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            +E  Q +F  M +KD   W ++I    ++G+G K++ +F +M+     P  ++++ VL 
Sbjct: 327 KLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLG 386

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           AC+HTG+V+EG++ F  M  +HGI+P+  HY CMVDLLGRA  L+EA ++I+++ ++P  
Sbjct: 387 ACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGP 446

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
            VWG+LLGACR+H   E+AE A+K++ +L+P N   YVLL +IYA    WD  + +++++
Sbjct: 447 KVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLL 506

Query: 578 LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF 637
             R ++K PG S IE+   ++ F + D+ +PQ ++++  L  +++++K  GY P    V 
Sbjct: 507 DSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVL 566

Query: 638 LDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDRE 697
            D+ +E+KER V  HSEKLA+AFGLI++  G TIRI KNLR+C DCH + K +S   DRE
Sbjct: 567 YDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADRE 626

Query: 698 VIVRDKTRFHHFKHGSCSCKDYW 720
           ++VRD  RFHHFK G CSC DYW
Sbjct: 627 IMVRDLNRFHHFKDGVCSCGDYW 649



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 197/433 (45%), Gaps = 42/433 (9%)

Query: 7   ISPPSTLTQET--PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           +S  S  TQ+T   LI       S+     +H   +  G   +P +  KL+    SE   
Sbjct: 61  LSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMF-SELDT 119

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
           +  A KVF K  + ++ +WN + +  +      + + +Y  M    V  D +T+ +LLK 
Sbjct: 120 VDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKA 179

Query: 125 -FTRDIAVEF---GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
               +  V F   GKE+H H+L+ G+ + V V   L+  Y   G V  A  +FD     +
Sbjct: 180 CVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKN 239

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEM--ERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           VV+W+AM + Y +  +  E  +LF EM       +P SVT+V VL ACA    L+ GK  
Sbjct: 240 VVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLI 299

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H Y+    +   L + +AL  MYA CG++     IF  +  KDV+ W ++++ Y      
Sbjct: 300 HAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSY------ 353

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                                + GY      R+A+ +F EM      P   + +S+L AC
Sbjct: 354 --------------------GLHGY-----GRKAIKIFEEMIDHGFSPSHISFISVLGAC 388

Query: 359 ANLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFT 416
           ++ G +E G+ + ++ + ++ ++  +     ++D+  +   +++A ++  ++ +      
Sbjct: 389 SHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKV 448

Query: 417 WTAMIVGLAINGH 429
           W +++    I+ H
Sbjct: 449 WGSLLGACRIHCH 461



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 122/273 (44%), Gaps = 17/273 (6%)

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           +I    +    ++AL L      SN  P + T   ++ + A   +L     V   +    
Sbjct: 44  LIQSLCKQGNLKQALYLLS--HESN--PTQQTCELLILSAARRNSLSDALDVHQLLVDGG 99

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
              D F+   LI+M+ +   V+ A++VF +  ++  + W A+   LA+ G G+  L+++ 
Sbjct: 100 FDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYP 159

Query: 439 QMLRASIIPDEVTYVGVLSACTHT----GMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           +M    +  D  TY  +L AC  +      + +G+E  A + ++HG   +      ++D+
Sbjct: 160 RMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHI-LRHGYGAHVHVMTTLMDM 218

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH--RDAEMAEMAAKQILELDPDNEA 552
             R G ++ A  V   MP+K N + W A++ AC     +  E  E+  + +L    D+  
Sbjct: 219 YARFGCVSYASAVFDEMPVK-NVVSWSAMI-ACYAKNGKPYEALELFREMMLNTH-DSVP 275

Query: 553 VYVLLCNIYAACNRWDNFRE---LRQMILDRGI 582
             V + ++  AC  +    +   +   IL RG+
Sbjct: 276 NSVTMVSVLQACAAFAALEQGKLIHAYILRRGL 308


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/470 (44%), Positives = 311/470 (66%), Gaps = 2/470 (0%)

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           +EN+L   Y ACG++G A ++   +  KDVISWT+IV  Y     +  A + F   P +D
Sbjct: 184 VENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKD 243

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            V WTAM+ GY +     +AL  F +M  + +  DE ++   ++ACA LGA+    W++ 
Sbjct: 244 MVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQE 303

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
             D++ +  ++ VG+ L+DMY KCG +++A RVF  M  K+ +T+++MIVGLA +G  + 
Sbjct: 304 IADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRAND 363

Query: 433 SLDMFSQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++ +F+ M+R A + P+ VT++GVL+AC+H GMV EGR YFA M  ++GI P+  HY CM
Sbjct: 364 AIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCM 423

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAG + EAL+++K+M ++P+  VWGALLGACR+H + ++A++AA+ + +L+P+  
Sbjct: 424 VDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEPEGI 483

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIE-MNGVVHEFVAGDKSHPQT 610
             YVLL N  A+   WD   ++R+++  RG+KK P  S  E  +G+VH+F AGD +HP  
Sbjct: 484 GNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNTHPWM 543

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
            EI   L E+ + LK  GY+P +S V  +V +E+KER +  HSEKLA++FGL++     +
Sbjct: 544 HEIKKTLLELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGHSEKLALSFGLLTLESRSS 603

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IRIVKNLR+C DCH   +LVS V   E+IVRD  RFHHF+ G CSC  +W
Sbjct: 604 IRIVKNLRICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 131/321 (40%), Gaps = 69/321 (21%)

Query: 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF 204
           GFD   FV+N+LI  Y  CG+V  AR + D     DV++W ++ + Y R +      ++F
Sbjct: 177 GFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVF 236

Query: 205 G-------------------------------EMERKGVLPTSVTIVLVLSACAKLKDLD 233
                                           +M   G+    V++   +SACA+L  + 
Sbjct: 237 ALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVR 296

Query: 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293
                        +  N+++ + L DMYA CG +  A  +F  ++ K+V ++++++ G  
Sbjct: 297 RAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLA 356

Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
           + G+ + A   F+ M  R                              +++ P+  T + 
Sbjct: 357 SHGRANDAIALFNDMVRR------------------------------ADVEPNHVTFIG 386

Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVG----NALIDMYCKCGDVEKAQRVFREM 409
           +LTAC++ G ++ G +   Y  + K +  I         ++D+  + G V +A  + + M
Sbjct: 387 VLTACSHAGMVKEGRY---YFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSM 443

Query: 410 -LRKDKFTWTAMIVGLAINGH 429
            +      W A++    I+G+
Sbjct: 444 TVEPHGGVWGALLGACRIHGN 464



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 15/270 (5%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           S   DM  A +VF   P   +  W  M+ GY++       +  +  M  + +  D  +  
Sbjct: 224 SRSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLT 283

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
             +    +  AV     +     + G   +V V + L+  Y  CG +D A  +F+   + 
Sbjct: 284 GAISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEK 343

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRA 238
           +V T+++M  G     + ++   LF +M R+  V P  VT + VL+AC+    +  G+  
Sbjct: 344 NVYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYY 403

Query: 239 HRYVKE-CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS----WTAIVTGYI 293
              +K+   I+P+      + D+    G  G  +E    +K+  V      W A++    
Sbjct: 404 FAQMKDRYGILPSADHYTCMVDL---LGRAGLVIEALDLVKSMTVEPHGGVWGALLGACR 460

Query: 294 NRGQVDMAR----QYFDQMPE--RDYVLWT 317
             G   +A+      F   PE   +YVL +
Sbjct: 461 IHGNTKVAKVAAQHLFKLEPEGIGNYVLLS 490


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/617 (36%), Positives = 356/617 (57%), Gaps = 12/617 (1%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           +  LI     C S+   +Q+  +  +  + T  +V   L        G +  A  +FR +
Sbjct: 58  QNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKL-----GFLDEADSLFRSM 112

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P    C WN+M+ G+++ D  +  +  +  M K     + YTF   L   +    +  G 
Sbjct: 113 PERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGV 172

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           ++H  + K    S V++ +AL+  Y  CG V+ A+ +FD     +VV+WN++ + Y++  
Sbjct: 173 QIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNG 232

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILE 254
              E  K+F  M    V P  VT+  V+SACA L  + VG+  H R VK  K+  ++IL 
Sbjct: 233 PAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILS 292

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           NA  DMYA C  +  A  IF ++  ++VI+ T++V+GY        AR  F +M ER+ V
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVV 352

Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
            W A+I GY +     EAL+LF  ++  ++ P  +T  +IL ACA+L  L LG     ++
Sbjct: 353 SWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHV 412

Query: 375 DKNKVK------NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            K+  K      +DIFVGN+LIDMY KCG VE+   VFR+M+ +D  +W AMI+G A NG
Sbjct: 413 LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNG 472

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
           +G+++L++F +ML +   PD +T +GVLSAC H G V+EGR YF+ MT   G+ P   HY
Sbjct: 473 YGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY 532

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
            CMVDLLGRAG L EA  +I+ MP++P+S++WG+LL AC+VHR+  + +  A+++ E++ 
Sbjct: 533 TCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVET 592

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
            N   YVLL N+YA   +W +   +R+++   G+ K PGCS I++ G  H F+  DKSHP
Sbjct: 593 SNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHP 652

Query: 609 QTKEIYLKLDEMTSDLK 625
           + K+I+  LD + ++++
Sbjct: 653 RKKQIHSLLDILIAEMR 669



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 202/456 (44%), Gaps = 100/456 (21%)

Query: 137 LHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ 196
           +H  V+K GF + VF+QN LI  Y  CG ++  R +FD   + +V TWN++ +G  ++  
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 197 FDETRKL-------------------------------FGEMERKGVLPTSVTIVLVLSA 225
            DE   L                               F  M ++G +    T    LSA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           C+ L D++ G + H  + +   + ++ + +AL DMY+ CG +  A ++F  + +++V+SW
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSW 221

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            +++T Y   G                                  EAL +F+ M  S + 
Sbjct: 222 NSLITCYEQNGPA-------------------------------VEALKVFQVMLESWVE 250

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           PDE T+ S+++ACA+L A+++G+ V   + K +K++NDI + NA +DMY KC  +++A+ 
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARF 310

Query: 405 V-------------------------------FREMLRKDKFTWTAMIVGLAINGHGDKS 433
           +                               F +M  ++  +W A+I G   NG  +++
Sbjct: 311 IFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACT-----HTGMVDEGREYFADMTIQHGIEPNEAHY 488
           L +F  + R S+ P   T+  +L AC      H GM             Q G E +    
Sbjct: 371 LSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
             ++D+  + G + E   V + M M+ + + W A++
Sbjct: 431 NSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMI 465



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 177/371 (47%), Gaps = 17/371 (4%)

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR-AHRYVKECKIVPNLILENALTDM 260
           KL G++        S     +L +C KLK   +  R  H  V +      + ++N L D 
Sbjct: 8   KLAGDLSS---FTVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDA 64

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           YA CG +    ++F  +  ++V +W ++VTG    G +D A   F  MPERD   W +M+
Sbjct: 65  YAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMV 124

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380
            G+ + +R  EAL  F  M       +E+T  S L+AC+ L  +  G  + + I K+   
Sbjct: 125 SGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCL 184

Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440
           +D+++G+AL+DMY KCG+V  AQ+VF EM  ++  +W ++I     NG   ++L +F  M
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVM 244

Query: 441 LRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500
           L + + PDEVT   V+SAC     +  G+E  A +     +  +       VD+  +   
Sbjct: 245 LESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSR 304

Query: 501 LNEALEVIKNMPMK----PNSIVWGALLGACRVHRDAEMAEMAAKQILELDP-------- 548
           + EA  +  +MP++      S+V G  + A          +MA + ++  +         
Sbjct: 305 IKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQN 364

Query: 549 -DNEAVYVLLC 558
            +NE    L C
Sbjct: 365 GENEEALSLFC 375


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/653 (35%), Positives = 361/653 (55%), Gaps = 40/653 (6%)

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           R  V  WNTM+    +       V    DM+   VRPD  TF   L   +R   ++ G+E
Sbjct: 235 RGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGRE 294

Query: 137 LHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYKR 193
           +H +V+K     ++ FV +AL+  Y    +V  AR +FD+       +  WNAM  GY +
Sbjct: 295 MHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQ 354

Query: 194 VKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
               +E  +LF  ME + G +P   T+  VL ACA+ +     +  H YV +  +  N  
Sbjct: 355 AGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRF 414

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           ++NAL DMYA                                 G+ D+AR+ F  +   D
Sbjct: 415 VQNALMDMYA-------------------------------RLGKTDVARRIFAMVDLPD 443

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQT---SNIRPDEFTIVSILTACANLGALELGEW 369
            V W  +I G +      +A  L REMQ      + P+  T++++L  CA L A   G+ 
Sbjct: 444 VVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKE 503

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           +  Y  ++ +  D+ VG+AL+DMY KCG +  ++ VF  + R++  TW  +I+   ++G 
Sbjct: 504 IHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGL 563

Query: 430 GDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
           G ++  +F +M  +    P+EVT++  L+AC+H+GMVD G + F  M   HG+EP     
Sbjct: 564 GGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDIL 623

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLGACRVHRDAEMAEMAAKQILELD 547
            C+VD+LGRAG L+EA  ++ +M      +  W  +LGACR+HR+  + E+A +++LEL+
Sbjct: 624 ACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELE 683

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P+  + YVLLCNIY+A  +W    E+R  +  RG+ K PGCS IE++G +H F+AG+ +H
Sbjct: 684 PEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAH 743

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P ++E++  ++ +  ++   GY PD S V  D+ + DK   +  HSEKLA+AFGL+ + P
Sbjct: 744 PASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAP 803

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G TIR+ KNLR+C DCH  AK +S +  RE+++RD  RFHHF++G CSC DYW
Sbjct: 804 GATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 204/491 (41%), Gaps = 58/491 (11%)

Query: 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF--DSSVFVQNALI 157
            L  + M     + D+   P  +K           + +H   L+ G     S  V NAL+
Sbjct: 44  ALSSITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALL 103

Query: 158 STYCLCGEVDMARGIFDVSYKD---DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           + Y  CG +  A  +F  S  D   D V++N++ S     +++D        M   G   
Sbjct: 104 TAYARCGRLAAALEVFG-SISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPL 162

Query: 215 TSVTIVLVLSACAKL----KDLDVGKRAHRYVKECKIVPN--LILENALTDMYAACGEMG 268
           TS T+V VL A + L      + +G+ AH +  +  ++        NAL  MYA  G + 
Sbjct: 163 TSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVA 222

Query: 269 FALEIFGNIK--NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
            A  +F        DV++W  +V+  +  G  D                           
Sbjct: 223 DAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFD--------------------------- 255

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFV 385
               EA+    +M    +RPD  T  S L AC+ L  L++G  +  Y+ K +++  + FV
Sbjct: 256 ----EAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFV 311

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQM-LR 442
            +AL+DMY     V KA++VF  +    K    W AMI G A  G  +++L +F++M   
Sbjct: 312 ASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAE 371

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
           A  +P E T   VL AC  +     G+E      ++ G+  N      ++D+  R G  +
Sbjct: 372 AGFVPCETTMASVLPACARSEAF-AGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTD 430

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD-----PDNEAVYVLL 557
            A  +   + + P+ + W  L+  C V      A   A+++ +L+     P+   +  LL
Sbjct: 431 VARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLL 489

Query: 558 --CNIYAACNR 566
             C I AA  R
Sbjct: 490 PGCAILAAPAR 500



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 122/284 (42%), Gaps = 11/284 (3%)

Query: 16  ETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           ET + S +  C   E+    + +H   +K G+  N  VQN L+    +  G    A ++F
Sbjct: 378 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMY-ARLGKTDVARRIF 436

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK---SDVRPDNYTFPFLLKGFTRDI 129
             +  P V  WNT+I G        +   +  +M +     V P+  T   LL G     
Sbjct: 437 AMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILA 496

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A   GKE+H + ++   D+ V V +AL+  Y  CG + ++R +FD   + + +TWN +  
Sbjct: 497 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 556

Query: 190 GYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKI 247
            Y       E   LF  M   G   P  VT +  L+AC+    +D G +  H   ++  +
Sbjct: 557 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 616

Query: 248 VPNLILENALTDMYAACGEM--GFALEIFGNIKNKDVISWTAIV 289
            P   +   + D+    G +   +A+        + V +W+ ++
Sbjct: 617 EPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTML 660



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 147/361 (40%), Gaps = 43/361 (11%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIV--PNLILENALTDMYAACGEMGFALEIFGNIKN 279
            + + A L+D    +  H       ++  P+  + NAL   YA CG +  ALE+FG+I +
Sbjct: 65  AIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISD 124

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
                                           D V + ++I       R+  AL   R M
Sbjct: 125 S-----------------------------AHDAVSFNSLISALCLFRRWDHALAALRAM 155

Query: 340 QTSNIRPDEFTIVSILTACANL----GALELGEWVKTYIDKNKV--KNDIFVGNALIDMY 393
                    FT+VS+L A ++L     A+ LG     +  KN +   +  F  NAL+ MY
Sbjct: 156 LAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMY 215

Query: 394 CKCGDVEKAQRVFREML--RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
            + G V  AQR+F      R D  TW  M+  L  +G  D+++     M+   + PD VT
Sbjct: 216 ARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVT 275

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +   L AC+   ++D GRE  A +     +  N      +VD+      + +A +V   +
Sbjct: 276 FASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMV 335

Query: 512 PMKPNSI-VWGALL-GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
           P     + +W A++ G  +   D E   + A+  +E +         + ++  AC R + 
Sbjct: 336 PDSGKQLGMWNAMICGYAQAGMDEEALRLFAR--MEAEAGFVPCETTMASVLPACARSEA 393

Query: 570 F 570
           F
Sbjct: 394 F 394


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 369/662 (55%), Gaps = 43/662 (6%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A ++F ++P+P    +NT+I  Y+R    +    ++L+M ++ +  D +T    L G   
Sbjct: 93  AHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFT----LSGIIT 148

Query: 128 DIAVEFG--KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTW 184
              +  G  ++LH   +  G DS V V NALI++Y   G +  AR IF  +S   D V+W
Sbjct: 149 ACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSW 208

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N+M   Y + ++  +  +L+ EM  +G++    T+  VL+A   ++DL  G + H  + +
Sbjct: 209 NSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIK 268

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                N  + + L D+Y+ CG  G  L+                             R+ 
Sbjct: 269 SGYHQNSHVGSGLIDLYSKCG--GCMLD----------------------------CRKV 298

Query: 305 FDQMPERDYVLWTAMIDGY-LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           FD++   D VLW  MI GY L  +   EAL  FR++Q    RPD+ ++V +++AC+N+ +
Sbjct: 299 FDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSS 358

Query: 364 LELGEWVKTYIDKNKV-KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
              G  V     K  +  N I V NALI MY KCG++  A+ +F  M   +  ++ +MI 
Sbjct: 359 PSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIA 418

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A +G G +SL +F +ML     P  +T++ VL+AC HTG V++G+ YF  M  + GIE
Sbjct: 419 GYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIE 478

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   H+ CM+DLLGRAG L+EA  +I+ +P  P    W ALLGACR+H + E+A  AA +
Sbjct: 479 PEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANR 538

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           +L+LDP N A YV+L NIY+   R  +   +R+++ DRG+KK PGCS IE+N  +H FVA
Sbjct: 539 LLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVA 598

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD----VGEEDKERAVYQHSEKLAM 658
            D  HP  K+I   L+EM   +K VGY P++    +     V + ++E  +  HSEKLA+
Sbjct: 599 EDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEKLAV 658

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           +FGL+S+  G  I + KNLR+CVDCH   K +S V  RE+ VRD  RFH FK G CSC  
Sbjct: 659 SFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGG 718

Query: 719 YW 720
           YW
Sbjct: 719 YW 720



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 7/178 (3%)

Query: 19  LISPIETCESMH---QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L+  I  C +M    Q +Q+H   +KL + +N    N  +    S+ G+++ A  +F  +
Sbjct: 346 LVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTM 405

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P  +   +N+MI GY++       + ++  ML+    P N TF  +L        VE GK
Sbjct: 406 PEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGK 465

Query: 136 ELHCHVL--KFGFDSSVFVQNALISTYCLCGEVDMA-RGIFDVSYKDDVVTWNAMFSG 190
            ++ +++  KFG +      + +I      G++  A R I  + +      W+A+   
Sbjct: 466 -IYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGA 522


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/709 (34%), Positives = 369/709 (52%), Gaps = 37/709 (5%)

Query: 17  TPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR 73
           T L S +  C S   +     IHS  +  GL  +  + N LV    S  G +  A  +FR
Sbjct: 247 TTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMY-STAGKLDEAESLFR 305

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN-YTFPFLLKGFTRDIAVE 132
            + R  V  WNTMI  Y + +S    +     +L++D  P N  TF   L   +   A+ 
Sbjct: 306 NMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALM 365

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G+ +H  +L+    + + + N+L++ Y  C  ++    +F+     DVV+ N +  GY 
Sbjct: 366 NGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYA 425

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL-DVGKRAHRYVKECKIVPNL 251
            ++      ++F  M   G+ P  +T++ +   C  L DL   G   H YV +  ++ + 
Sbjct: 426 ALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDE 485

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + N+L  MYA CG++  +  IF  I NK VIS                           
Sbjct: 486 YITNSLITMYATCGDLESSTGIFSRINNKSVIS--------------------------- 518

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
               W A+I   +R  R  EA+ LF + Q +  + D F +   L++ ANL +LE G  + 
Sbjct: 519 ----WNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLH 574

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
               KN +  D  V NA +DMY KCG ++   +   +   +    W  +I G A  G+  
Sbjct: 575 GLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFK 634

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++ D F  M+     PD VT+V +LSAC+H G++D+G +Y+  M    G+ P   H  C+
Sbjct: 635 EAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCI 694

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGR G   EA + I  MP+ PN ++W +LL + R H++ ++   AAK +LELDP ++
Sbjct: 695 VDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDD 754

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
           + YVLL N+YA   RW +  +LR  +    + K P CS +++   V  F  GD+SH   +
Sbjct: 755 SAYVLLSNLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKNEVSTFGIGDRSHMHAE 814

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           +IY+KLDE+   L+ VGY+ D S    D  EE KE  ++ HSEKLA+A+GL+    G TI
Sbjct: 815 KIYVKLDEILLKLREVGYVADTSSALHDTDEEQKEHNLWNHSEKLALAYGLLVVPEGSTI 874

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI KNLR+C DCH + KLVSMV+ RE+++RD  RFH FKHGSCSC D+W
Sbjct: 875 RIFKNLRVCADCHLVFKLVSMVFHREIVLRDPYRFHQFKHGSCSCSDFW 923



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 123/536 (22%), Positives = 237/536 (44%), Gaps = 42/536 (7%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           Q+ +  +  GLLT+ +V N L+T   + +  ++ A ++F ++       WN MI  YS  
Sbjct: 166 QVTAHVVVSGLLTHVSVANSLITMFGNLR-RVQDAERLFDRMEERDRISWNAMISMYSHE 224

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           + +    ++  DM   +V+PD  T   L+        V  G  +H   +  G   SV + 
Sbjct: 225 EVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLI 284

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGE-MERKGV 212
           NAL++ Y   G++D A  +F    + DV++WN M S Y +     E  +  G+ ++    
Sbjct: 285 NALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEG 344

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
            P S+T    L AC+  + L  G+  H  + +  +   L++ N+L  MY+ C  M     
Sbjct: 345 PPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTER 404

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F                               + MP  D V    +  GY  +     A
Sbjct: 405 VF-------------------------------ESMPCYDVVSCNVLTGGYAALEDVANA 433

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGAL-ELGEWVKTYIDKNKVKNDIFVGNALID 391
           + +F  M+ + I+P+  T++++   C +LG L   G  +  Y+ +  + +D ++ N+LI 
Sbjct: 434 MRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLIT 493

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY  CGD+E +  +F  +  K   +W A+I     +G G++++ +F     A    D   
Sbjct: 494 MYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFC 553

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
               LS+  +   ++EG +    +++++G++ +       +D+ G+ G ++  L+ + + 
Sbjct: 554 LAECLSSSANLASLEEGMQLHG-LSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDP 612

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL--DPDNEAVYVLLCNIYAACN 565
             +P    W  L+     +   + AE   K ++ +   PD    YV    + +AC+
Sbjct: 613 AHRPTQ-CWNTLISGYARYGYFKEAEDTFKHMVSVGQKPD----YVTFVALLSACS 663



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/444 (21%), Positives = 191/444 (43%), Gaps = 40/444 (9%)

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL-----KGFTRDI 129
           +P  +   W T + G +R         +   M + DV    +    L+     +G+    
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A   G  +H    + G   +V++  AL+  Y   G V  A+ +F    + +VV+W A+  
Sbjct: 61  AC--GAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMV 118

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
                   +E    +  M ++GV+  +  +  V+S C  L+D   G +   +V    ++ 
Sbjct: 119 ALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLT 178

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ + N+L  M             FGN++                  +V  A + FD+M 
Sbjct: 179 HVSVANSLITM-------------FGNLR------------------RVQDAERLFDRME 207

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ERD + W AMI  Y     + +   +  +M+   ++PD  T+ S+++ CA+   + LG  
Sbjct: 208 ERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSG 267

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           + +    + +   + + NAL++MY   G +++A+ +FR M R+D  +W  MI     +  
Sbjct: 268 IHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNS 327

Query: 430 GDKSLDMFSQMLRA-SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
             ++L+   Q+L+     P+ +T+   L AC+    +  GR   A M +Q  ++      
Sbjct: 328 CVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHA-MILQRSLQNVLLIG 386

Query: 489 GCMVDLLGRAGHLNEALEVIKNMP 512
             ++ +  +   + +   V ++MP
Sbjct: 387 NSLLTMYSKCNSMEDTERVFESMP 410


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/617 (37%), Positives = 348/617 (56%), Gaps = 44/617 (7%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           +  C ++  + QIH+Q +K  L  +  V  KL+    S    +  A  VF  +P P+V L
Sbjct: 28  LHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIA-AFSLCRHLASAVNVFNHVPHPNVHL 86

Query: 83  WNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           +N++I+ ++   SH++     +  M K+ + PDN+T+PFLLK  +   ++   + +H HV
Sbjct: 87  YNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHV 146

Query: 142 LKFGFDSSVFVQNALISTYCLCGE--VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            K GF   +FV N+LI +Y  CG   +D A  +F    + DVVTWN+M  G  R  +   
Sbjct: 147 EKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQG 206

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
             KLF EM  +                                       +++  N + D
Sbjct: 207 ACKLFDEMPDR---------------------------------------DMVSWNTMLD 227

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
            YA  GEM  A E+F  +  ++++SW+ +V GY   G +DMAR  FD+ P ++ VLWT +
Sbjct: 228 GYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTI 287

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I GY      REA  L+ +M+ + +RPD+  ++SIL ACA  G L LG+ +   + + + 
Sbjct: 288 IAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRF 347

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +    V NA IDMY KCG ++ A  VF  M+ +KD  +W +MI G A++GHG+K+L++FS
Sbjct: 348 RCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFS 407

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
            M++    PD  T+VG+L ACTH G+V+EGR+YF  M   +GI P   HYGCM+DLLGR 
Sbjct: 408 WMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRG 467

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           GHL EA  ++++MPM+PN+I+ G LL ACR+H D ++A    +Q+ +L+P +   Y LL 
Sbjct: 468 GHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLS 527

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           NIYA    W N   +R  + + G +K  G S IE+   VHEF   D+SHP++ +IY  +D
Sbjct: 528 NIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYQMID 587

Query: 619 EMTSDLKFVGYMPDISE 635
            +  DL+ VGY+P I +
Sbjct: 588 RLVQDLRQVGYVPMIHQ 604


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/653 (35%), Positives = 361/653 (55%), Gaps = 40/653 (6%)

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           R  V  WNTM+    +       V    DM+   VRPD  TF   L   +R   ++ G+E
Sbjct: 233 RGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGRE 292

Query: 137 LHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYKR 193
           +H +V+K     ++ FV +AL+  Y    +V  AR +FD+       +  WNAM  GY +
Sbjct: 293 MHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQ 352

Query: 194 VKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
               +E  +LF  ME + G +P   T+  VL ACA+ +     +  H YV +  +  N  
Sbjct: 353 AGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRF 412

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           ++NAL DMYA                                 G+ D+AR+ F  +   D
Sbjct: 413 VQNALMDMYA-------------------------------RLGKTDVARRIFAMVDLPD 441

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQT---SNIRPDEFTIVSILTACANLGALELGEW 369
            V W  +I G +      +A  L REMQ      + P+  T++++L  CA L A   G+ 
Sbjct: 442 VVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKE 501

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           +  Y  ++ +  D+ VG+AL+DMY KCG +  ++ VF  + R++  TW  +I+   ++G 
Sbjct: 502 IHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGL 561

Query: 430 GDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
           G ++  +F +M  +    P+EVT++  L+AC+H+GMVD G + F  M   HG+EP     
Sbjct: 562 GGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDIL 621

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLGACRVHRDAEMAEMAAKQILELD 547
            C+VD+LGRAG L+EA  ++ +M      +  W  +LGACR+HR+  + E+A +++LEL+
Sbjct: 622 ACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELE 681

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P+  + YVLLCNIY+A  +W    E+R  +  RG+ K PGCS IE++G +H F+AG+ +H
Sbjct: 682 PEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAH 741

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P ++E++  ++ +  ++   GY PD S V  D+ + DK   +  HSEKLA+AFGL+ + P
Sbjct: 742 PASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAP 801

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G TIR+ KNLR+C DCH  AK +S +  RE+++RD  RFHHF++G CSC DYW
Sbjct: 802 GATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 204/491 (41%), Gaps = 58/491 (11%)

Query: 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF--DSSVFVQNALI 157
            L  + M     + D+   P  +K           + +H   L+ G     S  V NAL+
Sbjct: 42  ALSSITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALL 101

Query: 158 STYCLCGEVDMARGIFDVSYKD---DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           + Y  CG +  A  +F  S  D   D V++N++ S     +++D        M   G   
Sbjct: 102 TAYARCGRLAAALEVFG-SISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPL 160

Query: 215 TSVTIVLVLSACAKL----KDLDVGKRAHRYVKECKIV--PNLILENALTDMYAACGEMG 268
           TS T+V VL A + L      + +G+ AH +  +  ++        NAL  MYA  G + 
Sbjct: 161 TSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVA 220

Query: 269 FALEIFGNIK--NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
            A  +F        DV++W  +V+  +  G  D                           
Sbjct: 221 DAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFD--------------------------- 253

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFV 385
               EA+    +M    +RPD  T  S L AC+ L  L++G  +  Y+ K +++  + FV
Sbjct: 254 ----EAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFV 309

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQM-LR 442
            +AL+DMY     V KA++VF  +    K    W AMI G A  G  +++L +F++M   
Sbjct: 310 ASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAE 369

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
           A  +P E T   VL AC  +     G+E      ++ G+  N      ++D+  R G  +
Sbjct: 370 AGFVPCETTMASVLPACARSEAF-AGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTD 428

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD-----PDNEAVYVLL 557
            A  +   + + P+ + W  L+  C V      A   A+++ +L+     P+   +  LL
Sbjct: 429 VARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLL 487

Query: 558 --CNIYAACNR 566
             C I AA  R
Sbjct: 488 PGCAILAAPAR 498



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 122/284 (42%), Gaps = 11/284 (3%)

Query: 16  ETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           ET + S +  C   E+    + +H   +K G+  N  VQN L+    +  G    A ++F
Sbjct: 376 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMY-ARLGKTDVARRIF 434

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK---SDVRPDNYTFPFLLKGFTRDI 129
             +  P V  WNT+I G        +   +  +M +     V P+  T   LL G     
Sbjct: 435 AMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILA 494

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A   GKE+H + ++   D+ V V +AL+  Y  CG + ++R +FD   + + +TWN +  
Sbjct: 495 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 554

Query: 190 GYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKI 247
            Y       E   LF  M   G   P  VT +  L+AC+    +D G +  H   ++  +
Sbjct: 555 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 614

Query: 248 VPNLILENALTDMYAACGEM--GFALEIFGNIKNKDVISWTAIV 289
            P   +   + D+    G +   +A+        + V +W+ ++
Sbjct: 615 EPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTML 658



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 147/361 (40%), Gaps = 43/361 (11%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIV--PNLILENALTDMYAACGEMGFALEIFGNIKN 279
            + + A L+D    +  H       ++  P+  + NAL   YA CG +  ALE+FG+I +
Sbjct: 63  AIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISD 122

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
                                           D V + ++I       R+  AL   R M
Sbjct: 123 S-----------------------------AHDAVSFNSLISALCLFRRWDHALAALRAM 153

Query: 340 QTSNIRPDEFTIVSILTACANL----GALELGEWVKTYIDKNKV--KNDIFVGNALIDMY 393
                    FT+VS+L A ++L     A+ LG     +  KN +   +  F  NAL+ MY
Sbjct: 154 LAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMY 213

Query: 394 CKCGDVEKAQRVFREML--RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
            + G V  AQR+F      R D  TW  M+  L  +G  D+++     M+   + PD VT
Sbjct: 214 ARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVT 273

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +   L AC+   ++D GRE  A +     +  N      +VD+      + +A +V   +
Sbjct: 274 FASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMV 333

Query: 512 PMKPNSI-VWGALL-GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
           P     + +W A++ G  +   D E   + A+  +E +         + ++  AC R + 
Sbjct: 334 PDSGKQLGMWNAMICGYAQAGMDEEALRLFAR--MEAEAGFVPCETTMASVLPACARSEA 391

Query: 570 F 570
           F
Sbjct: 392 F 392


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/469 (44%), Positives = 294/469 (62%), Gaps = 31/469 (6%)

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
           ++ NAL DMYA  G   +A ++F  + +KDVISWT++VTG ++ G               
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGS-------------- 48

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
                            + EAL LF EM+   I PD+  I ++L+ACA L  LE G+ V 
Sbjct: 49  -----------------YEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVH 91

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
               K+ + + + V N+L+ MY KCG +E A +VF  M  +D  TWTA+IVG A NG G 
Sbjct: 92  ANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGR 151

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           +SL+ ++ M+ + + PD +T++G+L AC+H G+V+ GR YF  M   +GI+P   HY CM
Sbjct: 152 ESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACM 211

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           +DLLGR+G L EA E++  M ++P++ VW ALL ACRVH + E+ E AA  + EL+P N 
Sbjct: 212 IDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNA 271

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL N+Y+A  +W+   + R+++  RG+ K PGCS IEM+  VH F++ D+SHP+T 
Sbjct: 272 VPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTA 331

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
           EIY K+DE+   +K  GY+PD++    D+ EE KE  +  HSEKLA+AFGL++  PG  I
Sbjct: 332 EIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPI 391

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RI KNLR+C DCH   K VS V+ R VI+RD   FHHF+ G+CSC DYW
Sbjct: 392 RIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 440



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 42/305 (13%)

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            V NAL+  Y   G  D A  +F+     DV++W ++ +G      ++E  +LF EM   
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G+ P  + I  VLSACA+L  L+ GK+ H    +  +  +L ++N+L  MYA CG +  A
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
            ++F +++ +DVI+WTA++ GY   G                               R R
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNG-------------------------------RGR 151

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG---- 386
           E+L  + +M  S ++PD  T + +L AC++ G +E G   ++Y    +    I  G    
Sbjct: 152 ESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHG---RSYFQSMEEVYGIKPGPEHY 208

Query: 387 NALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH---GDKSLDMFSQMLR 442
             +ID+  + G + +A+ +  +M ++ D   W A++    ++G+   G+++ +   ++  
Sbjct: 209 ACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEP 268

Query: 443 ASIIP 447
            + +P
Sbjct: 269 KNAVP 273



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 138/303 (45%), Gaps = 6/303 (1%)

Query: 50  VQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS 109
           V N LV    ++ G   YA  VF K+    V  W +++ G     S++  + ++ +M   
Sbjct: 4   VNNALVDMY-AKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 110 DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMA 169
            + PD      +L        +EFGK++H + LK G  SS+ V N+L+S Y  CG ++ A
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 170 RGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229
             +FD     DV+TW A+  GY +  +  E+   + +M   GV P  +T + +L AC+  
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 230 KDLDVGKRAHRYVKEC-KIVPNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTA 287
             ++ G+   + ++E   I P       + D+    G++  A E+   +    D   W A
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 288 IVTGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           ++      G V++  +  + + E   ++ V +  + + Y    ++ EA    R M+   +
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 345 RPD 347
             +
Sbjct: 303 SKE 305


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/753 (32%), Positives = 386/753 (51%), Gaps = 104/753 (13%)

Query: 21  SPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S ++ C  +      K++HS      +  +  +  KLV+F  +  GD+K   +VF  + +
Sbjct: 104 SVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYAT-CGDLKEGRRVFDTMEK 162

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            +V LWN M+  Y++I   K  + ++  M++  +           +G   + A E     
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI-----------EGKRPESAFE----- 206

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
                                             +FD     DV++WN+M SGY      
Sbjct: 207 ----------------------------------LFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           +    ++ +M   G+     TI+ VL  CA    L +GK  H    +      +   N L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER------ 311
            DMY+ CG++  AL +F  +  ++V+SWT+++ GY   G+ D A +   QM +       
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDV 352

Query: 312 -----------------------DYV----------LWTAMIDGYLRVNRFREALTLFRE 338
                                  DY+          +  A++D Y +      A ++F  
Sbjct: 353 VAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFST 412

Query: 339 MQTSNI----------RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           M   +I          +PD  T+  +L ACA+L ALE G+ +  YI +N   +D  V NA
Sbjct: 413 MVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANA 472

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           L+D+Y KCG +  A+ +F  +  KD  +WT MI G  ++G+G++++  F++M  A I PD
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD 532

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
           EV+++ +L AC+H+G++++G  +F  M     IEP   HY CMVDLL R G+L++A E I
Sbjct: 533 EVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFI 592

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
           + +P+ P++ +WGALL  CR + D E+AE  A+++ EL+P+N   YVLL NIYA   +W+
Sbjct: 593 ETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWE 652

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK-SHPQTKEIYLKLDEMTSDLKFV 627
             + LR+ I  +G++K PGCS IE+ G V+ FV+G+  SHP +K I   L +M   +K  
Sbjct: 653 EVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEE 712

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           G+ P      ++  E  KE A+  HSEKLAMAFGL++  P  TIR+ KNLR+C DCH MA
Sbjct: 713 GHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMA 772

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           K +S    RE+++RD  RFHHFK G CSC+ +W
Sbjct: 773 KFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 161/339 (47%), Gaps = 23/339 (6%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           M +K  L T  T   VL  CA LK    GK+ H  +K   +  +  L   L   YA CG+
Sbjct: 91  MCKKSELETK-TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGD 149

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRG--------------------QVDMARQYFD 306
           +     +F  ++ K+V  W  +V+ Y   G                    + + A + FD
Sbjct: 150 LKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFD 209

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
           ++ +RD + W +MI GY+        L ++++M    I  D  TI+S+L  CAN G L L
Sbjct: 210 KLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSL 269

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+ V +   K+  +  I   N L+DMY KCGD++ A RVF +M  ++  +WT+MI G   
Sbjct: 270 GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           +G  D ++ +  QM +  +  D V    +L AC  +G +D G++   D    + +E N  
Sbjct: 330 DGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVH-DYIKANNMESNLF 388

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
               ++D+  + G +  A  V   M +K + I W  ++G
Sbjct: 389 VCNALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMIG 426


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/666 (35%), Positives = 361/666 (54%), Gaps = 41/666 (6%)

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           +  GD+  A KVF  +   +V +W  MI  Y +       V ++L ML+    PD YT  
Sbjct: 194 ARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMS 253

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC---LCGEVDMARGIFDVS 176
            ++       +   G++LH  VL+ G  S   V   L+  Y    +   ++ AR +F   
Sbjct: 254 SMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRM 313

Query: 177 YKDDVVTWNAMFSGYKRVK-QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235
              +V++W A+ SGY +   Q +   +L  EM  + + P  +T   +L ACA L D D G
Sbjct: 314 PTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSG 373

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           ++ H  V +  I    ++ NAL  MYA  G M                            
Sbjct: 374 RQIHARVMKTSIGNVNVVGNALVSMYAESGCM---------------------------- 405

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
              + AR+ FDQ+ ER+ +  ++ I    R N      +   ++++ ++    FT  S+L
Sbjct: 406 ---EEARKAFDQLYERNLLSTSSDIGETGRSNA-----SWSSQIESMDVGVSTFTFASLL 457

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-KDK 414
           +A A +G    G+ +     K   ++D  + N+L+ MY +CG ++ A R F EM    + 
Sbjct: 458 SAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNV 517

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +WT++I  LA +GH +++L +F  M+ + + P++VTY+ VLSAC+H G+V EG+EYF  
Sbjct: 518 ISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRS 577

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           M   H + P   HY CMVDLL R+G + EALE I  MP K +++VW  LLGACR + + E
Sbjct: 578 MQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIE 637

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           + E+AA+ +++L+P + A YVLL N+YA    WD    +R ++  R + K  G S + + 
Sbjct: 638 IGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVG 697

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
             +HEF AGD SHP+ +EIY KL  +  ++K +GY+PD S V  D+ ++ KE+ + QHSE
Sbjct: 698 NTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSE 757

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           K+A+AFGLI++ P   IRI KNLR+C DCH   K +S    RE+I+RD  RFH  K G C
Sbjct: 758 KIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKC 817

Query: 715 SCKDYW 720
           SC +YW
Sbjct: 818 SCGEYW 823



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 128/523 (24%), Positives = 230/523 (43%), Gaps = 47/523 (8%)

Query: 50  VQNKLVTFCCSEKGDMKYACKVFRKI-PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK 108
           V N L+T   S+ G ++ A +VF  +     +  W  M    +R  + +  +++  +ML+
Sbjct: 81  VANSLLTMY-SKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEMLE 139

Query: 109 SDVRPDNYTFPFLLKG-FTRDIAVEFGKELHCHVLKFGF-DSSVFVQNALISTYCLCGEV 166
           S +RP+ +T        F  ++    G  +    +K GF  + V V  ALI  +   G++
Sbjct: 140 SGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNGDL 199

Query: 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
             AR +F+   +  VV W  M + Y +     +  +LF  M   G  P   T+  ++SAC
Sbjct: 200 VAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSAC 259

Query: 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC---GEMGFALEIFGNIKNKDVI 283
           A+     +G++ H  V    +V +  +   L DMY        M  A ++F  +   +V+
Sbjct: 260 AEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVM 319

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343
           SWTA+++GY+  G                               +   A+ L  EM   +
Sbjct: 320 SWTALISGYVQCG------------------------------GQENNAVELLCEMLNES 349

Query: 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403
           I P+  T  S+L ACANL   + G  +   + K  + N   VGNAL+ MY + G +E+A+
Sbjct: 350 IEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEAR 409

Query: 404 RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463
           + F ++  ++  + ++      I   G  +    SQ+    +     T+  +LSA    G
Sbjct: 410 KAFDQLYERNLLSTSS-----DIGETGRSNASWSSQIESMDVGVSTFTFASLLSAAATVG 464

Query: 464 MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523
           +  +G++  A ++I+ G E ++     +V +  R G+L++A      M    N I W ++
Sbjct: 465 LPTKGQQLHA-LSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSI 523

Query: 524 LGACRVHRDAEMA-EMAAKQILELDPDNEAVYVLLCNIYAACN 565
           + A   H  AE A  +    IL     N+  Y+    + +AC+
Sbjct: 524 ISALAKHGHAERALSLFHDMILSGVKPNDVTYI---AVLSACS 563



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 158/347 (45%), Gaps = 35/347 (10%)

Query: 133 FGKELHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSG 190
            G+ LH  +L     D+   V N+L++ Y  CG V  AR +FD +    D+V+W AM   
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFC 120

Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
             R     E   L GEM   G+ P + T+     AC                      P 
Sbjct: 121 LTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHAC---------------------FPG 159

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
                   +++ + G       I       DV    A++  +   G +  AR+ F+ + E
Sbjct: 160 --------ELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVE 211

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
           R  V+WT MI  Y++     +A+ LF  M      PD +T+ S+++ACA  G+  LG+ +
Sbjct: 212 RTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQL 271

Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKC---GDVEKAQRVFREMLRKDKFTWTAMIVG-LAI 426
            + + +  + +D  V   L+DMY K      +E A++VF+ M   +  +WTA+I G +  
Sbjct: 272 HSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQC 331

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473
            G  + ++++  +ML  SI P+ +TY  +L AC +    D GR+  A
Sbjct: 332 GGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHA 378


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/653 (35%), Positives = 361/653 (55%), Gaps = 40/653 (6%)

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           R  V  WNTM+    +       V    DM+   VRPD  TF   L   +R   ++ G+E
Sbjct: 233 RGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGRE 292

Query: 137 LHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYKR 193
           +H +V+K     ++ FV +AL+  Y    +V  AR +FD+       +  WNAM  GY +
Sbjct: 293 MHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQ 352

Query: 194 VKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
               +E  +LF  ME + G +P   T+  VL ACA+ +     +  H YV +  +  N  
Sbjct: 353 AGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRF 412

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           ++NAL DMYA                                 G+ D+AR+ F  +   D
Sbjct: 413 VQNALMDMYA-------------------------------RLGKTDVARRIFAMVDLPD 441

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQT---SNIRPDEFTIVSILTACANLGALELGEW 369
            V W  +I G +      +A  L REMQ      + P+  T++++L  CA L A   G+ 
Sbjct: 442 VVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKE 501

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           +  Y  ++ +  D+ VG+AL+DMY KCG +  ++ VF  + R++  TW  +I+   ++G 
Sbjct: 502 IHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGL 561

Query: 430 GDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
           G ++  +F +M  +    P+EVT++  L+AC+H+GMVD G + F  M   HG+EP     
Sbjct: 562 GGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDIL 621

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLGACRVHRDAEMAEMAAKQILELD 547
            C+VD+LGRAG L+EA  ++ +M      +  W  +LGACR+HR+  + E+A +++LEL+
Sbjct: 622 ACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELE 681

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P+  + YVLLCNIY+A  +W    E+R  +  RG+ K PGCS IE++G +H F+AG+ +H
Sbjct: 682 PEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAH 741

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P ++E++  ++ +  ++   GY PD S V  D+ + DK   +  HSEKLA+AFGL+ + P
Sbjct: 742 PASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAP 801

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G TIR+ KNLR+C DCH  AK +S +  RE+++RD  RFHHF++G CSC DYW
Sbjct: 802 GATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 204/491 (41%), Gaps = 58/491 (11%)

Query: 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF--DSSVFVQNALI 157
            L  + M     + D+   P  +K           + +H   L+ G     S  V NAL+
Sbjct: 42  ALSSITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALL 101

Query: 158 STYCLCGEVDMARGIFDVSYKD---DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214
           + Y  CG +  A  +F  S  D   D V++N++ S     +++D        M   G   
Sbjct: 102 TAYARCGRLAAALEVFG-SISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPL 160

Query: 215 TSVTIVLVLSACAKL----KDLDVGKRAHRYVKECKIVPN--LILENALTDMYAACGEMG 268
           TS T+V VL A + L      + +G+ AH +  +  ++        NAL  MYA  G + 
Sbjct: 161 TSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVA 220

Query: 269 FALEIFGNIK--NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
            A  +F        DV++W  +V+  +  G  D                           
Sbjct: 221 DAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFD--------------------------- 253

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFV 385
               EA+    +M    +RPD  T  S L AC+ L  L++G  +  Y+ K +++  + FV
Sbjct: 254 ----EAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFV 309

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQM-LR 442
            +AL+DMY     V KA++VF  +    K    W AMI G A  G  +++L +F++M   
Sbjct: 310 ASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAE 369

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
           A  +P E T   VL AC  +     G+E      ++ G+  N      ++D+  R G  +
Sbjct: 370 AGFVPCETTMASVLPACARSEAF-AGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTD 428

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD-----PDNEAVYVLL 557
            A  +   + + P+ + W  L+  C V      A   A+++ +L+     P+   +  LL
Sbjct: 429 VARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLL 487

Query: 558 --CNIYAACNR 566
             C I AA  R
Sbjct: 488 PGCAILAAPAR 498



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 122/284 (42%), Gaps = 11/284 (3%)

Query: 16  ETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           ET + S +  C   E+    + +H   +K G+  N  VQN L+    +  G    A ++F
Sbjct: 376 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMY-ARLGKTDVARRIF 434

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK---SDVRPDNYTFPFLLKGFTRDI 129
             +  P V  WNT+I G        +   +  +M +     V P+  T   LL G     
Sbjct: 435 AMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILA 494

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A   GKE+H + ++   D+ V V +AL+  Y  CG + ++R +FD   + + +TWN +  
Sbjct: 495 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 554

Query: 190 GYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKI 247
            Y       E   LF  M   G   P  VT +  L+AC+    +D G +  H   ++  +
Sbjct: 555 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 614

Query: 248 VPNLILENALTDMYAACGEM--GFALEIFGNIKNKDVISWTAIV 289
            P   +   + D+    G +   +A+        + V +W+ ++
Sbjct: 615 EPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTML 658



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 147/361 (40%), Gaps = 43/361 (11%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIV--PNLILENALTDMYAACGEMGFALEIFGNIKN 279
            + + A L+D    +  H       ++  P+  + NAL   YA CG +  ALE+FG+I +
Sbjct: 63  AIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISD 122

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
                                           D V + ++I       R+  AL   R M
Sbjct: 123 S-----------------------------AHDAVSFNSLISALCLFRRWDHALAALRAM 153

Query: 340 QTSNIRPDEFTIVSILTACANL----GALELGEWVKTYIDKNKV--KNDIFVGNALIDMY 393
                    FT+VS+L A ++L     A+ LG     +  KN +   +  F  NAL+ MY
Sbjct: 154 LAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMY 213

Query: 394 CKCGDVEKAQRVFREML--RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
            + G V  AQR+F      R D  TW  M+  L  +G  D+++     M+   + PD VT
Sbjct: 214 ARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVT 273

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +   L AC+   ++D GRE  A +     +  N      +VD+      + +A +V   +
Sbjct: 274 FASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMV 333

Query: 512 PMKPNSI-VWGALL-GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569
           P     + +W A++ G  +   D E   + A+  +E +         + ++  AC R + 
Sbjct: 334 PDSGKQLGMWNAMICGYAQAGMDEEALRLFAR--MEAEAGFVPCETTMASVLPACARSEA 391

Query: 570 F 570
           F
Sbjct: 392 F 392


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/718 (33%), Positives = 373/718 (51%), Gaps = 101/718 (14%)

Query: 53  KLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112
           KLV+F  +  GD+K   +VF  + + +V LWN M+  Y++I   K  + ++  M++  + 
Sbjct: 1   KLVSFYAT-CGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 59

Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
                                GK                               + A  +
Sbjct: 60  ---------------------GKR-----------------------------SESASEL 69

Query: 173 FDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232
           FD     DV++WN+M SGY      +    ++ +M   G+     TI+ VL  CAK   L
Sbjct: 70  FDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTL 129

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
            +GK  H    +      +   N L DMY+ CG++  AL +F  +  ++V+SWT+++ GY
Sbjct: 130 SLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGY 189

Query: 293 INRGQVDMARQYFDQMPER-----------------------------DYV--------- 314
              G  D A     QM +                              DY+         
Sbjct: 190 TRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNL 249

Query: 315 -LWTAMIDGYLRVNRFREALTLFREMQTSNI----------RPDEFTIVSILTACANLGA 363
            +  A++D Y +      A ++F  M   +I          +PD  T+  IL ACA+L A
Sbjct: 250 FVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSA 309

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           LE G+ +  YI +N   +D  V NAL+D+Y KCG +  A+ +F  +  KD  +WT MI G
Sbjct: 310 LERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAG 369

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
             ++G+G++++  F++M  A I PDEV+++ +L AC+H+G++++G  +F  M     IEP
Sbjct: 370 YGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEP 429

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
              HY CMVDLL R G+L++A + I+ +P+ P++ +WGALL  CR++ D E+AE  A+++
Sbjct: 430 KLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERV 489

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
            EL+P+N   YVLL NIYA   +W+  + +R+ I  +G++K PGCS IE+ G V+ FV+G
Sbjct: 490 FELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSG 549

Query: 604 DK-SHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
           +  SHP +K+I   L +M   +K  GY P      ++  E  KE A+  HSEKLAMAFGL
Sbjct: 550 NNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGL 609

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           ++  P  TIR+ KNLR+C DCH MAK +S    RE+++RD  RFHHFK G CSC+ +W
Sbjct: 610 LTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 667


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 243/680 (35%), Positives = 379/680 (55%), Gaps = 87/680 (12%)

Query: 12  TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE--KGDMKYAC 69
           T     P++S ++ C+S+ +L+QIH+Q IK  LL +    ++L+ FC      G + YA 
Sbjct: 2   TAISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYAS 61

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK-----SDVRPDNYTFPFLLKG 124
            VF +I  P+  ++  +IKG+S   +    +++Y  ML      S V    ++ P +LK 
Sbjct: 62  SVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV---EFSIPSVLKA 118

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
             + +A + G+++H  VLK       FV N+++  Y   GE+++AR +FD     DVV+W
Sbjct: 119 CGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSW 178

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N+M +GY +  + +   +LF EM  +                                  
Sbjct: 179 NSMIAGYLKAGEIELASELFDEMPER---------------------------------- 204

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                +L+  NA+ D Y  CG    A ++F  + +KDV++WT++++ Y+           
Sbjct: 205 -----DLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQ---------- 249

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
            ++ P +                    AL LFREM +  +RPD   IVS+L+A A+LG +
Sbjct: 250 -NRCPMK--------------------ALDLFREMLSLGLRPDGPAIVSVLSAIADLGFV 288

Query: 365 ELGEWVKTYIDKNKVK-NDIFVGNALIDMYCKCGDVEKAQRVFREML-RKDKFTWTAMIV 422
           E G+W+  Y+  NK++ +  F+G+ALIDMY KCG +E A  VFR +  R++   W +MI 
Sbjct: 289 EEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMIS 348

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           GLAI+G   ++LD+F +M R  I P+E+T++G+LS C+H G+V+EG+ YF  M  ++ I 
Sbjct: 349 GLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIV 408

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   HYGCM+DL GRAG L +AL VI+NMP + + + W A+L A   H   E+ + AA +
Sbjct: 409 PRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALR 468

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
            +EL PD+ + YVLL NIYA   RWD+  ++R M+  RG+KK  GCS + +BG VHEF+ 
Sbjct: 469 AIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFLX 528

Query: 603 G---DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA 659
           G   D S+  + ++  K+ E+ S LK  GY PD+++V LD+ +E KE  +  HSEK+A A
Sbjct: 529 GKELDSSY--SGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAXA 586

Query: 660 FGLISSGPGVTIRIVKNLRM 679
           FGLI       I IVKNLR+
Sbjct: 587 FGLIHINKSAPIHIVKNLRI 606


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/707 (35%), Positives = 383/707 (54%), Gaps = 56/707 (7%)

Query: 23  IETCESM---HQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPR 77
           ++ C ++   H  + IH   I  GL  +  V   L+     C+   D   A  +F  +P 
Sbjct: 17  LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD---AAHIFATMPA 73

Query: 78  PSVCLWNTMIKGYSRIDSHKNGV--LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
             +  WN M+ GY+    + + V  L+ + M    +RP+  T   LL    +  A+  G 
Sbjct: 74  RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGT 133

Query: 136 ELHCHVL----------KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
            +H + +          K      V +  AL+  Y  CG +  AR +FD     + VTW+
Sbjct: 134 SVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 193

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVL---PTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           A+  G+    +  +   LF  M  +G+    PTS  I   L ACA L  L +G++ H  +
Sbjct: 194 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGEQLHALL 251

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +  +  +L   N+L  MYA                                 G +D A 
Sbjct: 252 AKSGVHADLTAGNSLLSMYA-------------------------------KAGLIDQAI 280

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
             FD+M  +D V ++A++ GY++  R  EA  +F++MQ  N+ PD  T+VS++ AC++L 
Sbjct: 281 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 340

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
           AL+ G      +    + ++  + NALIDMY KCG ++ +++VF  M  +D  +W  MI 
Sbjct: 341 ALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA 400

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G  I+G G ++  +F +M      PD VT++ +LSAC+H+G+V EG+ +F  M   +G+ 
Sbjct: 401 GYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLT 460

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   HY CMVDLL R G L+EA E I++MP++ +  VW ALLGACRV+++ ++ +  ++ 
Sbjct: 461 PRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRM 520

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           I EL P+    +VLL NIY+A  R+D   E+R +   +G KK+PGCS IE+NG +H FV 
Sbjct: 521 IQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 580

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGL 662
           GD+SHPQ+ EIY +LD +   +K +GY PD S V  D+ EE+KE+A+  HSEKLA+A+G+
Sbjct: 581 GDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGI 640

Query: 663 ISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHF 709
           +S     TI + KNLR+C DCH + K +S+V  R +IVRD  RFHHF
Sbjct: 641 LSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/529 (39%), Positives = 317/529 (59%), Gaps = 12/529 (2%)

Query: 202 KLFGEMERKGVLPTSVTIVLV---------LSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
           +LF  + R+   P S T +L           +A   +    +G   H    +     +L 
Sbjct: 111 RLFPRLPRRN--PHSFTFLLASLSNHLDTEPAAAGSIASRFMGTHVHALAVKAGAAGDLY 168

Query: 253 LENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
           + NA    Y  CG++    ++F  +   +DV++W A++ GY+  G V +AR+ FD MP R
Sbjct: 169 VRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVR 228

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D V W+ +I GY++      AL +F+ M    ++ +E  IV+ L+A A LG LE G++V 
Sbjct: 229 DEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVH 288

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
             + +  +   + +G ALIDMY KCG V  A+ VF  M R+D F W +MI GLA +G G 
Sbjct: 289 EVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGH 348

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
            ++ +F + +     P  +T+VGVL+AC+ TG+VDEGR YF  M  ++ IE    HYGCM
Sbjct: 349 DAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCM 408

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLL RAG + EA+E+I+ M + P+ ++WG +L AC+ H   ++      +++ELDP ++
Sbjct: 409 VDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAHD 468

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL +IYA   +WD  R++R+++ +RG  K+ G S++E +G+VH+F+ GD +H  + 
Sbjct: 469 GYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSA 528

Query: 612 EIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTI 671
            IY  L  +   L   GY+PD+S V  D+G+E+K  A+  HSE+LA+A+G I    G  I
Sbjct: 529 RIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPI 588

Query: 672 RIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           RIVKNL +C DCH  +K+V+ V+ RE++VRD +RFHH K G CSC DYW
Sbjct: 589 RIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 134/586 (22%), Positives = 224/586 (38%), Gaps = 139/586 (23%)

Query: 28  SMHQLKQIHSQTIKLGLLTNPTVQNKLVTF----CCSEKGDMKYACKVFRKIPRPSVCLW 83
           +++ + Q H++   LGL T   +   L         +      Y   +FR     S    
Sbjct: 38  ALYHVLQAHARLAVLGLATARALPQLLAALPRLTLAAADVSHSYPLLLFRCSNCTSAFAS 97

Query: 84  NTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE----------- 132
           N ++    R+  H     + L +     R + ++F FLL   +  +  E           
Sbjct: 98  NHLL----RVLPHP----LPLRLFPRLPRRNPHSFTFLLASLSNHLDTEPAAAGSIASRF 149

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTWNAMFSGY 191
            G  +H   +K G    ++V+NA I  Y +CG+V   R +FD +    DVVTWNA+ +GY
Sbjct: 150 MGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGY 209

Query: 192 KRVKQFDETRKLF---------------------GEME----------RKGVLPTSVTIV 220
            R       R++F                     GE E           +GV      IV
Sbjct: 210 VRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIV 269

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
             LSA A+L  L+ GK  H  VK   +  ++ L  AL DMY+ CG +  A E+F  +  +
Sbjct: 270 TALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRR 329

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           DV +W +++ G    G                                  +A+ LF +  
Sbjct: 330 DVFAWNSMICGLATHGL-------------------------------GHDAVQLFEKFV 358

Query: 341 TSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
           +    P   T V +L AC+  G ++ G  + K   +K  +++++     ++D+  + G V
Sbjct: 359 SEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLV 418

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           ++A  +   M                                   I PD V +  +LSAC
Sbjct: 419 QEAVELIEGM----------------------------------RIPPDPVLWGTILSAC 444

Query: 460 THTGMVDEGREYFADMTIQHG-IEPNEAH---YGCMVDLLGRAGHLNEALEVIKNMPMKP 515
              G+VD G      +T+ +  IE + AH   Y  +  +  +A   +E  +V K M  + 
Sbjct: 445 KRHGLVDLG------ITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRG 498

Query: 516 NSIVWG-ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560
            S   G +L+ A  +     + +M  K       D+  +Y +LC I
Sbjct: 499 TSKSAGWSLMEAHGIVHKFLVGDMNHK-------DSARIYNMLCTI 537


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/633 (35%), Positives = 350/633 (55%), Gaps = 33/633 (5%)

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
             +SR  S  + + ++   L    RPD+ TF   L    R   +  G+ +       G+ 
Sbjct: 82  AAHSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYK 140

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
             VFV ++L+  Y   G +  A  +F    + D VTW+ M +G+    Q  +  +++  M
Sbjct: 141 DDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM 200

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
              GV    V ++ V+ AC   +++ +G   H ++    +  +++   +L DMYA  G +
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  +FG + +++ +SW+A+++G+   GQ D                            
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSD---------------------------- 292

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
              EAL LFR MQ S I+PD   +VS L AC+N+G L+LG  V  +I + +   +  +G 
Sbjct: 293 ---EALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR-RFDFNCILGT 348

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           A IDMY KCG +  AQ +F  +  +D   W AMI     +G G  +L +F +M    + P
Sbjct: 349 AAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRP 408

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D  T+  +LSA +H+G+V+EG+ +F  M     I P E HY C+VDLL R+G + EA ++
Sbjct: 409 DHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDL 468

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           + +M  +P   +W ALL  C  ++  E+ E  A  ILEL PD+  V  L+ N+YAA  +W
Sbjct: 469 LTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKW 528

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           D  R++R+++ D G KK PGCS IE+ G  H FV  D+SHPQ +EI  K+ ++  +++ +
Sbjct: 529 DKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKM 588

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           GY+P    V+ D+ EE KE+ +  HSE+LA+AFGL+++GPG  + I+KNLR+C DCH   
Sbjct: 589 GYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAI 648

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           K +S + DRE++VRD  RFHHFK G CSC+DYW
Sbjct: 649 KYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 200/456 (43%), Gaps = 44/456 (9%)

Query: 9   PPSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM 65
           PP+     T     +  C  +  L+    +  +    G   +  V + L+    +  G M
Sbjct: 101 PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLY-ARWGAM 159

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             A KVF ++PR     W+TM+ G+       + + +Y  M +  V+ D      +++  
Sbjct: 160 GDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQAC 219

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
           T    V  G  +H H+L+ G    V    +L+  Y   G +D+A  +F +    + V+W+
Sbjct: 220 TAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWS 279

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           AM SG+ +  Q DE  +LF  M+  G+ P S  +V  L AC+ +  L +G+  H ++   
Sbjct: 280 AMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR- 338

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT--GYINRGQVDMARQ 303
           +   N IL  A  DMY+ CG +  A  +F  I ++D+I W A++   G   RGQ      
Sbjct: 339 RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQ------ 392

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
                                      +ALTLF+EM  + +RPD  T  S+L+A ++ G 
Sbjct: 393 ---------------------------DALTLFQEMNETGMRPDHATFASLLSALSHSGL 425

Query: 364 LELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT-WTAMI 421
           +E G+ W    ++  K+         L+D+  + G VE+A  +   M  +     W A++
Sbjct: 426 VEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALL 485

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            G   N   +    +   +L   + PD+V  + ++S
Sbjct: 486 SGCLNNKKLELGESIADNIL--ELQPDDVGVLALVS 519



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 155/385 (40%), Gaps = 85/385 (22%)

Query: 253 LENALTDMYAACGEMGF--------------------------------ALEIFGNI--- 277
           L ++L   YA  G++                                  AL +F  +   
Sbjct: 44  LISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGSPASALRVFRALPPA 103

Query: 278 KNKDVISWTAIVTGYIN----RGQVDMARQYFDQMPERD----------YVLWTAMID-- 321
              D  ++T  ++        RG   +  + FD   + D          Y  W AM D  
Sbjct: 104 ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAV 163

Query: 322 -------------------GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                              G++   +  +A+ ++R M+   ++ DE  ++ ++ AC    
Sbjct: 164 KVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAAR 223

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            + +G  V  ++ ++ ++ D+    +L+DMY K G ++ A RVF  M+ ++  +W+AMI 
Sbjct: 224 NVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMIS 283

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A NG  D++L +F  M  + I PD    V  L AC++ G +  GR         HG  
Sbjct: 284 GFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSV-------HGFI 336

Query: 483 PNEAHYGCM-----VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAE 537
                + C+     +D+  + G L  A +++ NM    + I+W A++  C  H   + A 
Sbjct: 337 VRRFDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGRGQDAL 395

Query: 538 MAAKQILE--LDPDNEAVYVLLCNI 560
              +++ E  + PD+     LL  +
Sbjct: 396 TLFQEMNETGMRPDHATFASLLSAL 420


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/457 (44%), Positives = 303/457 (66%), Gaps = 34/457 (7%)

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           ++ +M  KG++P + TI  VL ACA+ + +  G+  H    +  +  ++ + N L  MYA
Sbjct: 127 VYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYA 186

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG-------------------------Q 297
            C  +  A ++F     +D++SWT ++ GY+  G                          
Sbjct: 187 VCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNAL 246

Query: 298 VDM---------ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
           VDM         AR+ F +MP ++ V W +MI G  +  +F+E+L +FR+MQ   ++PD+
Sbjct: 247 VDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDD 306

Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
            T+V++L +CANLG LELG+WV  Y+D+N+++ D F+GNAL+DMY KCG +++A  VF+ 
Sbjct: 307 VTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQA 366

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
           M RKD +++TAMIVGLA++G G K+LD+FS+M +  I PDEVT+VGVL+AC+H G+V+EG
Sbjct: 367 MNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEG 426

Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
           R+YF DM+  + + P   HYGCMVDLLGRAG +NEA E I+NMP++P++ V GALLGAC+
Sbjct: 427 RKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACK 486

Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
           +H   E+ E   K+I +++P  +  YVL+ NIY++ NRW +  +LR+ + +R ++KTPGC
Sbjct: 487 IHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGC 546

Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625
           S IE++GV+HEF  GDKSHP+ KEIY  LDE+ S LK
Sbjct: 547 SSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 583



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 138/485 (28%), Positives = 216/485 (44%), Gaps = 110/485 (22%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNP----TVQNKLVTFCC-SEKGDMKYACKVFR 73
            +S ++TC+S+  LKQIH+  IK   + +P    T+  +L   C  S   D +YA  +  
Sbjct: 40  FLSTLQTCKSIKGLKQIHASIIKT--MPSPDAQLTISTRLSALCAQSLPIDPRYALSLLA 97

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHK-NGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
           ++  P++ L+N +I+G +  ++    G+++Y  ML   + PDNYT PF+LK      AV 
Sbjct: 98  QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVR 157

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G+E+H   +K G  S V+V N L+  Y +C  +  AR +FD S + D+V+W  M  GY 
Sbjct: 158 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 217

Query: 193 RVKQFDE----------------------------------TRKLFGEM----------- 207
           ++    E                                   RK+F EM           
Sbjct: 218 KMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSM 277

Query: 208 --------------------ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
                               +R GV P  VT+V VL++CA L  L++GK  H Y+   +I
Sbjct: 278 ISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQI 337

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             +  + NAL DMYA CG +  A  +F  +  KDV S+TA++ G    GQ          
Sbjct: 338 RADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGG-------- 389

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                  +AL LF EM    I PDE T V +LTAC+++G +E G
Sbjct: 390 -----------------------KALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEG 426

Query: 368 EWVKTYIDKNKVKN---DIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVG 423
              K + D + + N    +     ++D+  + G + +A+   R M +  D F   A++  
Sbjct: 427 R--KYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGA 484

Query: 424 LAING 428
             I+G
Sbjct: 485 CKIHG 489



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 17/293 (5%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           GD  +A KVF+++P  +V  WN+MI G ++    K  + ++  M +  V+PD+ T   +L
Sbjct: 254 GDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVL 313

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
                   +E GK +H ++ +    +  F+ NAL+  Y  CG +D A  +F    + DV 
Sbjct: 314 NSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVY 373

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           ++ AM  G     Q  +   LF EM + G+ P  VT V VL+AC+ +  ++ G+   +Y 
Sbjct: 374 SYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGR---KYF 430

Query: 243 KECKIV----PNLILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQ 297
           ++   +    P L     + D+    G +  A E   N+    D     A++      G+
Sbjct: 431 EDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGK 490

Query: 298 VDMARQYFDQM----PERD--YVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
           V++      ++    P +D  YVL   M + Y   NR+R+AL L + M+  N+
Sbjct: 491 VELGESVMKKIEKIEPRKDGAYVL---MSNIYSSANRWRDALKLRKTMKERNL 540


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/698 (33%), Positives = 376/698 (53%), Gaps = 39/698 (5%)

Query: 27  ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTM 86
           ++MH    I +QT     +++      L   C    G +  A  +F  +P  +V  WN +
Sbjct: 32  KAMHAQFLIRNQTSNHSHISHLNSLVHLYVKC----GQLGLARNLFDAMPLRNVVSWNVL 87

Query: 87  IKGYSRIDSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFG 145
           + GY    +H   ++++ +M+   +  P+ Y F   L   +    V+ G + H  + KFG
Sbjct: 88  MAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFG 147

Query: 146 FDSSVFVQNALISTYCLCGEVDMARGIFDV---SYKDDVVTWNAMFSGYKRVKQFDETRK 202
                +V++AL+  Y  C  V++A  + D     + +D+ ++N++ +      + +E  +
Sbjct: 148 LVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVE 207

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           +   M  + V    VT V V+  CA+++DL +G R H  +    ++ +  + + L DMY 
Sbjct: 208 VLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYG 267

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CGE                               V  AR  FD +  R+ V+WTA++  
Sbjct: 268 KCGE-------------------------------VLNARNVFDGLQNRNVVVWTALMTA 296

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382
           YL+   F E+L LF  M      P+E+T   +L ACA + AL  G+ +   ++K   KN 
Sbjct: 297 YLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNH 356

Query: 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442
           + V NALI+MY K G ++ +  VF +M+ +D  TW AMI G + +G G ++L +F  M+ 
Sbjct: 357 VIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVS 416

Query: 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502
           A   P+ VT++GVLSA +H G+V EG  Y   +     IEP   HY CMV LL RAG L+
Sbjct: 417 AEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLD 476

Query: 503 EALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562
           EA   +K   +K + + W  LL AC VHR+ ++    A+ +L++DP +   Y LL N+YA
Sbjct: 477 EAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYA 536

Query: 563 ACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS 622
              RWD    +R+++ +R IKK PG S +++   +H F++   +HP++ +IY K+ ++ +
Sbjct: 537 KARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLA 596

Query: 623 DLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVD 682
            +K +GY+P+I+ V  DV +E KE  +  HSEKLA+A+GL+       IRI+KNLRMC D
Sbjct: 597 LIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDD 656

Query: 683 CHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           CH   KL+S V +R +IVRD  RFHHF+ GSC+C D+W
Sbjct: 657 CHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 188/424 (44%), Gaps = 16/424 (3%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTF 57
           +F N  +S  +    E    + +  C    ++K   Q H    K GL+ +  V++ LV  
Sbjct: 103 LFKNM-VSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHM 161

Query: 58  CCSEKGDMKYACKVFRKIPRPSV---CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPD 114
             S    ++ A +V   +P   V     +N+++         +  V +   M+   V  D
Sbjct: 162 Y-SRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWD 220

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174
           + T+  ++    +   ++ G  +H  +L+ G     FV + LI  Y  CGEV  AR +FD
Sbjct: 221 HVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFD 280

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
                +VV W A+ + Y +   F+E+  LF  M+R+G LP   T  ++L+ACA +  L  
Sbjct: 281 GLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRH 340

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G   H  V++     ++I+ NAL +MY+  G +  +  +F ++  +D+I+W A++ GY +
Sbjct: 341 GDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSH 400

Query: 295 RGQVDMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFRE-MQTSNIRPDEF 349
            G    A Q F  M       +YV +  ++  Y  +   +E        M+   I P   
Sbjct: 401 HGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLE 460

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409
               ++   +  G L+  E    ++   +VK D+     L++      + +  +R+   +
Sbjct: 461 HYTCMVALLSRAGLLDEAE---NFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESV 517

Query: 410 LRKD 413
           L+ D
Sbjct: 518 LQMD 521



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 147/321 (45%), Gaps = 40/321 (12%)

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYV---KECKIVPNLILENALTDMYAACGEMGF 269
           LP+   +  +L  CA +K L  GK  H       +     ++   N+L  +Y  CG++G 
Sbjct: 9   LPSLEELGKLLKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGL 68

Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
           A  +F  +  ++V+SW  ++ GY++ G                                 
Sbjct: 69  ARNLFDAMPLRNVVSWNVLMAGYLHGGN-------------------------------H 97

Query: 330 REALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
            E L LF+ M +  N  P+E+   + L+AC++ G ++ G      + K  +    +V +A
Sbjct: 98  LEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSA 157

Query: 389 LIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
           L+ MY +C  VE A +V   +  +   D F++ +++  L  +G G++++++  +M+   +
Sbjct: 158 LVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECV 217

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
             D VTYVGV+  C     +  G    A + ++ G+  +E     ++D+ G+ G +  A 
Sbjct: 218 AWDHVTYVGVMGLCAQIRDLQLGLRVHARL-LRGGLMFDEFVGSMLIDMYGKCGEVLNAR 276

Query: 506 EVIKNMPMKPNSIVWGALLGA 526
            V   +  + N +VW AL+ A
Sbjct: 277 NVFDGLQNR-NVVVWTALMTA 296


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/582 (37%), Positives = 339/582 (58%), Gaps = 10/582 (1%)

Query: 149 SVFVQNALISTYCLCGEVDMARGIFDVSYKD-----DVVTWNAMFSGYKRVKQFDETRKL 203
           +V   +AL++ +   G+ + A  + +   +D     +V+TWN + SG  R  +  +    
Sbjct: 84  TVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVA 143

Query: 204 FGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
              M  +G+L P +  +   LSA   +  + VG++ H Y  +     +  +  AL DMY 
Sbjct: 144 LATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYG 203

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA----RQYFDQMPERDYVLWTA 318
            CG+    + +F    + DV S  A++ G     QV  A    +++ D+  E + V WT+
Sbjct: 204 KCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTS 263

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           ++   ++  +  EA+  FREMQ     P+  TI  +L A AN+ AL  G     +  +  
Sbjct: 264 IVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKG 323

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
             +D++V +AL+DMY KCG V+ A+ +F  M+ ++  +W AMI G A+ G    ++ MF 
Sbjct: 324 FLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFH 383

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
            ML+    PD VT+  +L+ACT  G+ +EGR YF +M  ++G+ P   HY CMV LLGRA
Sbjct: 384 SMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRA 443

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558
           G L+EA ++I +MP +P++ +WG+LLG+CRVH + ++AE+AA+++  L+P+N   YVLL 
Sbjct: 444 GKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLS 503

Query: 559 NIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618
           NIYA+   WD    +R+M+ D G+KK  GCS IE+   VH  +AGD SHP    I  K++
Sbjct: 504 NIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKIN 563

Query: 619 EMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLR 678
           ++   ++ +G++P    V  DV E++K+  +  HSEKLA+A GLIS+ PG T+R++KNLR
Sbjct: 564 QLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLR 623

Query: 679 MCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           +C DCH   K +S    RE+ VRD  RFHHF  G CSC D+W
Sbjct: 624 ICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 168/415 (40%), Gaps = 74/415 (17%)

Query: 60  SEKGDMKYACKVFRKIPR-----PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV-RP 113
           + +GD + A ++  ++ R     P+V  WN ++ G +R    ++ V+    M    + RP
Sbjct: 96  AARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRP 155

Query: 114 DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173
           D       L        V  G++LH + +K G  +   V  ALI  Y  CG+      +F
Sbjct: 156 DATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVF 215

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFG---------------------------- 205
           D S   DV + NA+ +G  R  Q  E  +LF                             
Sbjct: 216 DESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDL 275

Query: 206 -------EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
                  EM+ +G  P SVTI  VL A A +  L  G+ AH +      + ++ + +AL 
Sbjct: 276 EAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALV 335

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA CG +  A  IF  + +++V+SW A++ GY   G+                     
Sbjct: 336 DMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEA-------------------- 375

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKN 377
                  VN    A+ +F  M     +PD  T   +L AC   G  E G  + K   ++ 
Sbjct: 376 -------VN----AVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEY 424

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHGD 431
            V   +     ++ +  + G +++A  +  +M    D + W +++    ++G+ D
Sbjct: 425 GVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVD 479



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 128/280 (45%), Gaps = 9/280 (3%)

Query: 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK-- 278
           L+ +A      L + +  H   +   +  +  + ++L   Y   G  G A  +F  +   
Sbjct: 22  LLPTAFKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRP 81

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMP-----ERDYVLWTAMIDGYLRVNRFREAL 333
            + V+ W+A+V  +  RG  + A +  ++M      E + + W  ++ G  R  R R+A+
Sbjct: 82  QRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAV 141

Query: 334 TLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
                M     +RPD   +   L+A  ++G + +G+ +  Y  K   + D  V  ALIDM
Sbjct: 142 VALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDM 201

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y KCG   +  RVF E    D  +  A+I GL+ N    ++L +F + +   +  + V++
Sbjct: 202 YGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSW 261

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
             +++ C   G   E  E+F +M  Q G EPN     C++
Sbjct: 262 TSIVACCVQNGKDLEAVEFFREMQAQ-GTEPNSVTIPCVL 300



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 116/266 (43%), Gaps = 11/266 (4%)

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           +V  W +++    +       V  + +M      P++ T P +L  F    A+  G+  H
Sbjct: 257 NVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAH 316

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
           C  L+ GF   V+V +AL+  Y  CG V  AR IFD     +VV+WNAM  GY    +  
Sbjct: 317 CFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAV 376

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENAL 257
               +F  M +    P  VT   +L+AC +    + G+   + +  E  + P +     +
Sbjct: 377 NAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACM 436

Query: 258 TDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDM----ARQYFDQMPER- 311
             +    G++  A ++  ++    D   W +++      G VD+    A + F   PE  
Sbjct: 437 VTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENA 496

Query: 312 -DYVLWTAMIDG---YLRVNRFREAL 333
            +YVL + +      + RVNR RE +
Sbjct: 497 GNYVLLSNIYASKKMWDRVNRVREMM 522


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 351/607 (57%), Gaps = 7/607 (1%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVC 81
           +  C S+H+L Q+H+  +  G+  +      L ++C     G + YA ++F +IP P   
Sbjct: 19  LRRCGSVHRLNQLHAHLVVHGV--DDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRF 76

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           ++N++I+ Y      +  + +   M++  + P+ +T PFLLK   R  A E     H  V
Sbjct: 77  VYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           +K GF   VFV NAL+ +Y   G +  +R  FD     +VV+WN+M +GY +     E  
Sbjct: 137 VKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREAC 196

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY--VKECKIVPNLILENALTD 259
            LF  M R+G+L    T+V +L AC+   +L+ GK  H +  V+ C+I  +LIL NAL D
Sbjct: 197 SLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRI--DLILANALVD 254

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY  CG++  A   F  +  K+ +SWT+++     R  +D AR +F+Q+PE+  + W AM
Sbjct: 255 MYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAM 314

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I  Y++  RF EAL L+  M+   + PDEFT+ ++L+AC  LG L  G+ +   I  N  
Sbjct: 315 ISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFH 374

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
              + + N+L+DMY +CG V+ A  +F EM  K+  +W A+I  LA++G    +L  F  
Sbjct: 375 NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRS 434

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M+  +  PDE+T+V +LSAC H G+++ G+ YF  M   + ++P   HY CMVDLLGR G
Sbjct: 435 MVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGG 494

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
            L +A+++IK+MPM+P+ +VWGALLGACR+H   ++ +   KQ+LEL+  +  ++VL+ N
Sbjct: 495 QLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISN 554

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           +    ++W++ + LR+++ + G+KK  G S IE N  +HE  A    H  + ++Y+  D 
Sbjct: 555 MLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHESSDDMYVGDDR 614

Query: 620 MTSDLKF 626
           +   L F
Sbjct: 615 LPHHLVF 621


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/713 (32%), Positives = 390/713 (54%), Gaps = 55/713 (7%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC-----KVFR 73
           +I  +    S+ + K+IH+  IKLG +++  V N L++        MK  C     KVF 
Sbjct: 136 VIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLY------MKLGCAWDAEKVFE 189

Query: 74  KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
           ++P   +  WN+MI GY  +    + ++++ +MLK   +PD ++    L   +   + + 
Sbjct: 190 EMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKM 249

Query: 134 GKELHCHVLKFGFDSS-VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           GKE+HCH ++   ++  V V  +++  Y   GEV  A  IF+   + ++V WN M   Y 
Sbjct: 250 GKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYA 309

Query: 193 RVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
           R  +  +    F +M E+ G+ P  +T + +L A A L+    G+  H Y      +P++
Sbjct: 310 RNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHM 365

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
           +LE AL DMY  CG++          K+ +VI                     FD+M E+
Sbjct: 366 VLETALIDMYGECGQL----------KSAEVI---------------------FDRMAEK 394

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           + + W ++I  Y++  +   AL LF+E+  S++ PD  TI SIL A A   +L  G  + 
Sbjct: 395 NVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIH 454

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            YI K++  ++  + N+L+ MY  CGD+E A++ F  +L KD  +W ++I+  A++G G 
Sbjct: 455 AYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGR 514

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
            S+ +FS+M+ + + P++ T+  +L+AC+ +GMVDEG EYF  M  ++GI+P   HYGCM
Sbjct: 515 ISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCM 574

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           +DL+GR G+ + A   ++ MP  P + +WG+LL A R H+D  +AE AA+QI +++ DN 
Sbjct: 575 LDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNT 634

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
             YVLL N+YA   RW++   ++ ++  +GI +T   S +E  G  H F  GD+SH  T 
Sbjct: 635 GCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATN 694

Query: 612 EIYLKLDEMTSDLKFVG----YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           +IY  LD ++   + VG    Y+  +S +  +   + +  +  +HS +LA  FGLIS+  
Sbjct: 695 KIYEVLDVVS---RMVGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTET 751

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G  + +  N R+C  CH   +  S +  RE++V D   FHHF +G CSC +YW
Sbjct: 752 GRRVTVRNNTRICRKCHEFLEKASRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 3/241 (1%)

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           T  + G+ +   ++ A Q FD+M + D  LW  MI G+     + EA+  +  M  + ++
Sbjct: 68  TRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVK 127

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
            D FT   ++ + A + +LE G+ +   + K    +D++V N+LI +Y K G    A++V
Sbjct: 128 ADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKV 187

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F EM  +D  +W +MI G    G G  SL +F +ML+    PD  + +  L AC+H    
Sbjct: 188 FEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSP 247

Query: 466 DEGREYFADMTIQHGIEPNEAH-YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
             G+E      ++  IE  +      ++D+  + G ++ A E I N  ++ N + W  ++
Sbjct: 248 KMGKEIHCH-AVRSRIETGDVMVMTSILDMYSKYGEVSYA-ERIFNGMIQRNIVAWNVMI 305

Query: 525 G 525
           G
Sbjct: 306 G 306


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/708 (34%), Positives = 394/708 (55%), Gaps = 44/708 (6%)

Query: 23  IETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPR 77
           ++ C ++  L+    IH+     GL T+  V   L+     C+  G  +    VF K+P 
Sbjct: 107 LKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPAR---NVFAKMPM 163

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             V  WN M+ GY+    + + +   LDM     +RP+  T   LL    +  A+  G  
Sbjct: 164 RDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTS 223

Query: 137 LHCHVLKFGFDSS---VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           +H + L+   + +   V +  AL+  Y  C ++  A  +F      + VTW+A+  G+  
Sbjct: 224 IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVL 283

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
             +  E   LF +M  +G+   S T V   L  CA L DL +G + H  + +  I  +L 
Sbjct: 284 CDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLT 343

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
             N+L  MYA  G                                ++ A  +FD++  +D
Sbjct: 344 ASNSLLSMYAKAG-------------------------------LINEATMFFDEIAVKD 372

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            + + A++ G ++  +  EA  +F++MQ  N+ PD  T+VS++ AC++L AL+ G+    
Sbjct: 373 TISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHG 432

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            +    +  +  + N+LIDMY KCG ++ +++VF +M  +D  +W  MI G  I+G G +
Sbjct: 433 SVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKE 492

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +  +F  M      PD+VT++ +++AC+H+G+V EG+ +F  MT ++GI P   HY CMV
Sbjct: 493 ATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMV 552

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLL R G L+EA + I++MP+K +  VWGALLGACR+H++ ++ +  ++ I +L P+   
Sbjct: 553 DLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTG 612

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            +VLL NI++A  R+D   E+R +   +G KK+PG S IE+NG +H FV GD+SHP +++
Sbjct: 613 NFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRD 672

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY +LD +  D+K +GY  D S V  D+ EE+KE+A+  HSEKLA+AFG++S     TI 
Sbjct: 673 IYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIF 732

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + KNLR+C DCH   K +++V +R +IVRD  RFHHFK+G CSC ++W
Sbjct: 733 VTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/475 (25%), Positives = 219/475 (46%), Gaps = 38/475 (8%)

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
            +G +  A +VF +IP P    +N +I+ YS +      + +Y  ML+  V P+ YTFPF
Sbjct: 46  SRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPF 105

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +LK  +  + +  G+ +H H    G  + +FV  ALI  Y  C     AR +F      D
Sbjct: 106 VLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRD 165

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAH 239
           VV WNAM +GY     +        +M+  G L P + T+V +L   A+   L  G   H
Sbjct: 166 VVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIH 225

Query: 240 RYVKECKIVPN---LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
            Y     +  N   +++  AL DMYA C ++ +A  +F  +  ++ ++W           
Sbjct: 226 AYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTW----------- 274

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI-RPDEFTIVSIL 355
                               +A+I G++  +R  EA  LF++M    +      ++ S L
Sbjct: 275 --------------------SALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASAL 314

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
             CA+L  L +G  +   I K+ +  D+   N+L+ MY K G + +A   F E+  KD  
Sbjct: 315 RVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTI 374

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
           ++ A++ G   NG  +++  +F +M   ++ PD  T V ++ AC+H   +  G+     +
Sbjct: 375 SYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSV 434

Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
            I+ G+    +    ++D+  + G ++ + +V   MP + + + W  ++    +H
Sbjct: 435 IIR-GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIH 487



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 6/251 (2%)

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           KD   W   +  +I+RGQ+ +ARQ FD++P  D   + A+I  Y  +  F  A+ L+R M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
               + P+++T   +L AC+ L  L  G  +  +     +  D+FV  ALID+Y +C   
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARF 151

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML-RASIIPDEVTYVGVLSA 458
             A+ VF +M  +D   W AM+ G A +G    ++     M     + P+  T V +L  
Sbjct: 152 GPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPL 211

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHY---GCMVDLLGRAGHLNEALEVIKNMPMKP 515
               G + +G    A   ++  +E NE        ++D+  +   L  A  V   MP++ 
Sbjct: 212 LAQHGALFQGTSIHA-YCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR- 269

Query: 516 NSIVWGALLGA 526
           N + W AL+G 
Sbjct: 270 NDVTWSALIGG 280


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 369/662 (55%), Gaps = 43/662 (6%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A ++F ++P+P    +NT+I  Y+R    +    ++L+M ++ +  D +T    L G   
Sbjct: 93  AHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFT----LSGIIT 148

Query: 128 DIAVEFG--KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD-VSYKDDVVTW 184
              +  G  ++LH   +  G DS V V NALI++Y   G +  AR IF  +S   D V+W
Sbjct: 149 ACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSW 208

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N+M   Y + ++  +  +L+ EM  +G++    T+  VL+A   ++DL  G + H  + +
Sbjct: 209 NSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIK 268

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                N  + + L D+Y+ CG  G  L+                             R+ 
Sbjct: 269 SGYHQNSHVGSGLIDLYSKCG--GCMLD----------------------------CRKV 298

Query: 305 FDQMPERDYVLWTAMIDGY-LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           FD++   D VLW  MI GY L  +   EAL  FR++Q    RPD+ ++V +++AC+N+ +
Sbjct: 299 FDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSS 358

Query: 364 LELGEWVKTYIDKNKV-KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
              G  V     K  +  N I V NALI MY KCG++  A+ +F  M   +  ++ +MI 
Sbjct: 359 PSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIA 418

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
           G A +G G +SL +F +ML     P  +T++ VL+AC HTG V++G+ YF  M  + GIE
Sbjct: 419 GYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIE 478

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P   H+ CM+DLLGRAG L+EA  +I+ +P  P    W ALLGACR+H + E+A  AA +
Sbjct: 479 PEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANR 538

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           +L+LDP N A YV+L NIY+   R  +   +R+++ DRG+KK PGCS IE+N  +H FVA
Sbjct: 539 LLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVA 598

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLD----VGEEDKERAVYQHSEKLAM 658
            D  HP  K+I   L+EM   +K VGY P++    +     V + ++E  +  HSEKLA+
Sbjct: 599 EDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGHHSEKLAV 658

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           +FGL+S+  G  I + KNLR+CVDCH   K +S V  RE+ VRD  RFH FK G CSC  
Sbjct: 659 SFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGG 718

Query: 719 YW 720
           YW
Sbjct: 719 YW 720



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 7/178 (3%)

Query: 19  LISPIETCESMH---QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L+  I  C +M    Q +Q+H   +KL + +N    N  +    S+ G+++ A  +F  +
Sbjct: 346 LVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTM 405

Query: 76  PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
           P  +   +N+MI GY++       + ++  ML+ D  P N TF  +L        VE GK
Sbjct: 406 PEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGK 465

Query: 136 ELHCHVL--KFGFDSSVFVQNALISTYCLCGEVDMA-RGIFDVSYKDDVVTWNAMFSG 190
            ++ +++  KFG +      + +I      G++  A R I  + +      W+A+   
Sbjct: 466 -IYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGA 522


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/653 (35%), Positives = 361/653 (55%), Gaps = 40/653 (6%)

Query: 77  RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
           R  V  WNTM+    +       V    DM+   VRPD  TF   L   +R   ++ G+E
Sbjct: 81  RGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGRE 140

Query: 137 LHCHVLKFG-FDSSVFVQNALISTYCLCGEVDMARGIFDV--SYKDDVVTWNAMFSGYKR 193
           +H +V+K     ++ FV +AL+  Y    +V  AR +FD+       +  WNAM  GY +
Sbjct: 141 MHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQ 200

Query: 194 VKQFDETRKLFGEMERK-GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
               +E  +LF  ME + G +P   T+  VL ACA+ +     +  H YV +  +  N  
Sbjct: 201 AGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRF 260

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
           ++NAL DMYA                                 G+ D+AR+ F  +   D
Sbjct: 261 VQNALMDMYA-------------------------------RLGKTDVARRIFAMVDLPD 289

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQT---SNIRPDEFTIVSILTACANLGALELGEW 369
            V W  +I G +      +A  L REMQ      + P+  T++++L  CA L A   G+ 
Sbjct: 290 VVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKE 349

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
           +  Y  ++ +  D+ VG+AL+DMY KCG +  ++ VF  + R++  TW  +I+   ++G 
Sbjct: 350 IHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGL 409

Query: 430 GDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
           G ++  +F +M  +    P+EVT++  L+AC+H+GMVD G + F  M   HG+EP     
Sbjct: 410 GGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDIL 469

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSI-VWGALLGACRVHRDAEMAEMAAKQILELD 547
            C+VD+LGRAG L+EA  ++ +M      +  W  +LGACR+HR+  + E+A +++LEL+
Sbjct: 470 ACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELE 529

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P+  + YVLLCNIY+A  +W    E+R  +  RG+ K PGCS IE++G +H F+AG+ +H
Sbjct: 530 PEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAH 589

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P ++E++  ++ +  ++   GY PD S V  D+ + DK   +  HSEKLA+AFGL+ + P
Sbjct: 590 PASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAP 649

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G TIR+ KNLR+C DCH  AK +S +  RE+++RD  RFHHF++G CSC DYW
Sbjct: 650 GATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 122/284 (42%), Gaps = 11/284 (3%)

Query: 16  ETPLISPIETC---ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           ET + S +  C   E+    + +H   +K G+  N  VQN L+    +  G    A ++F
Sbjct: 224 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMY-ARLGKTDVARRIF 282

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLK---SDVRPDNYTFPFLLKGFTRDI 129
             +  P V  WNT+I G        +   +  +M +     V P+  T   LL G     
Sbjct: 283 AMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILA 342

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A   GKE+H + ++   D+ V V +AL+  Y  CG + ++R +FD   + + +TWN +  
Sbjct: 343 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 402

Query: 190 GYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKI 247
            Y       E   LF  M   G   P  VT +  L+AC+    +D G +  H   ++  +
Sbjct: 403 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 462

Query: 248 VPNLILENALTDMYAACGEM--GFALEIFGNIKNKDVISWTAIV 289
            P   +   + D+    G +   +A+        + V +W+ ++
Sbjct: 463 EPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTML 506



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 12/233 (5%)

Query: 348 EFTIVSILTACANL----GALELGEWVKTYIDKNKV--KNDIFVGNALIDMYCKCGDVEK 401
            FT+VS+L A ++L     A+ LG     +  KN +   +  F  NAL+ MY + G V  
Sbjct: 10  SFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVAD 69

Query: 402 AQRVFREML--RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
           AQR+F      R D  TW  M+  L  +G  D+++     M+   + PD VT+   L AC
Sbjct: 70  AQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPAC 129

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI- 518
           +   ++D GRE  A +     +  N      +VD+      + +A +V   +P     + 
Sbjct: 130 SRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLG 189

Query: 519 VWGALL-GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           +W A++ G  +   D E   + A+  +E +         + ++  AC R + F
Sbjct: 190 MWNAMICGYAQAGMDEEALRLFAR--MEAEAGFVPCETTMASVLPACARSEAF 240


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/670 (35%), Positives = 360/670 (53%), Gaps = 44/670 (6%)

Query: 62  KGDMKY--ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
           KG+  +  A KVF K+   +V  W  MI    ++   +  +  +LDM+ S    D +T  
Sbjct: 214 KGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLS 273

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC---GEVDMARGIFDVS 176
            +         +  GK+LH   ++ G    V  + +L+  Y  C   G VD  R +FD  
Sbjct: 274 SVFSACAELENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCRKVFDRM 331

Query: 177 YKDDVVTWNAMFSGY-KRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSACAKLKDLDV 234
               V++W A+ +GY K      E   LF EM  +G V P   T      AC  L D  V
Sbjct: 332 EDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRV 391

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           GK+              +L  A     A+   +                   ++++ ++ 
Sbjct: 392 GKQ--------------VLGQAFKRGLASNSSVA-----------------NSVISMFVK 420

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
             +++ A++ F+ + E++ V +   +DG  R   F +A  L  E+    +    FT  S+
Sbjct: 421 SDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASL 480

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           L+  AN+G++  GE + + + K  +  +  V NALI MY KCG ++ A RVF  M  ++ 
Sbjct: 481 LSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNV 540

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +WT+MI G A +G   + L+ F+QM+   + P+EVTYV +LSAC+H G+V EG  +F  
Sbjct: 541 ISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNS 600

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           M   H I+P   HY CMVDLL RAG L +A E I  MP + + +VW   LGACRVH + E
Sbjct: 601 MYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTE 660

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           + ++AA++ILELDP+  A Y+ L NIYA   +W+   E+R+ + +R + K  GCS IE+ 
Sbjct: 661 LGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVG 720

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD----ISEVFLDVGEEDKERAVY 650
             +H+F  GD +HP   +IY +LD + +++K  GY+PD    + ++  +  E +KER +Y
Sbjct: 721 DKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLY 780

Query: 651 QHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFK 710
           QHSEK+A+AFGLIS+     +R+ KNLR+C DCH   K +S V  RE+++RD  RFHHFK
Sbjct: 781 QHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFK 840

Query: 711 HGSCSCKDYW 720
            G CSC DYW
Sbjct: 841 DGKCSCNDYW 850



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 205/442 (46%), Gaps = 46/442 (10%)

Query: 99  GVLIYLDMLKSD-VRP-DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156
           G +  LD++  D +RP D+ TF  LLK   R      GK +H  +++F  +    + N+L
Sbjct: 44  GAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSL 103

Query: 157 ISTYCLCGEVDMARGIFDVSY---KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           IS Y   G+   A  +F+      K DVV+W+AM + Y    +  +  K+F E    G++
Sbjct: 104 ISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV 163

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYV-KECKIVPNLILENALTDMYAACGEMGFALE 272
           P       V+ AC+    + VG+    ++ K      ++ +  +L DM+   GE  F   
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVK-GENSF--- 219

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
                                     + A + FD+M E + V WT MI   +++   REA
Sbjct: 220 --------------------------ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREA 253

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
           +  F +M  S    D+FT+ S+ +ACA L  L LG+ + ++  ++ + +D  V  +L+DM
Sbjct: 254 IRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDM 311

Query: 393 YCKC---GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH-GDKSLDMFSQML-RASIIP 447
           Y KC   G V+  ++VF  M      +WTA+I G   N +   +++++FS+M+ +  + P
Sbjct: 312 YAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEP 371

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           +  T+     AC +      G++       + G+  N +    ++ +  ++  + +A   
Sbjct: 372 NHFTFSSAFKACGNLSDPRVGKQVLGQ-AFKRGLASNSSVANSVISMFVKSDRMEDAQRA 430

Query: 508 IKNMPMKPNSIVWGALL-GACR 528
            +++  K N + +   L G CR
Sbjct: 431 FESLSEK-NLVSYNTFLDGTCR 451



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 186/413 (45%), Gaps = 44/413 (10%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFR 73
           L S    C  +  L   KQ+HS  I+ GL+ +  V+  LV     CS  G +    KVF 
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFD 329

Query: 74  KIPRPSVCLWNTMIKGYSR-IDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAV 131
           ++   SV  W  +I GY +  +     + ++ +M+ +  V P+++TF    K        
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             GK++     K G  S+  V N++IS +     ++ A+  F+   + ++V++N    G 
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            R   F++  KL  E+  + +  ++ T   +LS  A +  +  G++ H  V +  +  N 
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 509

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
            + NAL  MY+ CG +  A  +F  ++N++VISWT+++TG+   G      + F+QM E 
Sbjct: 510 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 569

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW-- 369
                                           ++P+E T V+IL+AC+++G +  G W  
Sbjct: 570 -------------------------------GVKPNEVTYVAILSACSHVGLVSEG-WRH 597

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
             +  + +K+K  +     ++D+ C+ G +  A      M  + D   W   +
Sbjct: 598 FNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 146/327 (44%), Gaps = 22/327 (6%)

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRP-DEFTIVSILTACANLGALELGEWVKTYIDKN 377
           +I  +L     R A++    M    IRP D  T  S+L +C       LG+ V   + + 
Sbjct: 32  LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEF 91

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSL 434
            ++ D  + N+LI +Y K GD  KA+ VF  M R   +D  +W+AM+     NG    ++
Sbjct: 92  DIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAI 151

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MVD 493
            +F + L   ++P++  Y  V+ AC+++  V  GR       ++ G   ++   GC ++D
Sbjct: 152 KVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLG-FLMKTGHFESDVCVGCSLID 210

Query: 494 LLGRA-GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-E 551
           +  +       A +V   M  + N + W  ++  C           A +  L++     E
Sbjct: 211 MFVKGENSFENAYKVFDKMS-ELNVVTWTLMITRC---MQMGFPREAIRFFLDMVLSGFE 266

Query: 552 AVYVLLCNIYAACNRWDNF---RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
           +    L ++++AC   +N    ++L    +  G+     CS+++M    +   + D S  
Sbjct: 267 SDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDM----YAKCSADGSVD 322

Query: 609 QTKEIYLKLDE---MTSDLKFVGYMPD 632
             ++++ ++++   M+      GYM +
Sbjct: 323 DCRKVFDRMEDHSVMSWTALITGYMKN 349


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/435 (48%), Positives = 289/435 (66%), Gaps = 12/435 (2%)

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
            +  R  F Q+ + +  LW  MI G +  + F +A+  +  M++    P+ FT   +L A
Sbjct: 62  TNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKA 121

Query: 358 CANLGALELG---------EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
           CA L  L+LG         EW+   I +  +  ++FVG +L+DMY KCG++EKA+ VF  
Sbjct: 122 CARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDG 181

Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS---IIPDEVTYVGVLSACTHTGMV 465
           M  KD  +W AMI G A+NG   +++D+F QM R +   I PD  T++G+L  CTH G+V
Sbjct: 182 MPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLV 241

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           DEGR YF  M     + P+  HYGCMVDLLGRAG L+EA ++I+NMPM+ N+IVWGALLG
Sbjct: 242 DEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLG 301

Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585
           ACR+HRD ++AE+A KQ++EL+P N   YVLL NIY+A  +WD   ++R  + ++ I+K 
Sbjct: 302 ACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKP 361

Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
           PGCS IE++G+VHEF+ GDK HP +++IY KLDE+T  +K  GY+P    V  D+ EE+K
Sbjct: 362 PGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEK 421

Query: 646 ERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTR 705
           E  +  HSEKLA+AFGLIS+ P   IR+VKNLR+C DCH   KL+S +  RE+ VRD  R
Sbjct: 422 EHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNR 481

Query: 706 FHHFKHGSCSCKDYW 720
           FH F+ GSCSC DYW
Sbjct: 482 FHCFREGSCSCNDYW 496



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 132/306 (43%), Gaps = 47/306 (15%)

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           +FG     ++ N ++       + +  R +F    + ++  WN M  G      FD+  +
Sbjct: 39  RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH---------RYVKECKIVPNLIL 253
            +G M  +G LP + T   VL ACA+L DL +G + H         + + E  +V N+ +
Sbjct: 99  FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFV 158

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
             +L DMYA CG M                               + AR  FD MPE+D 
Sbjct: 159 GTSLVDMYAKCGNM-------------------------------EKARSVFDGMPEKDI 187

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSN---IRPDEFTIVSILTACANLGALELG-EW 369
           V W AMI GY      +EA+ LF +MQ  N   I+PD  T + +L  C + G ++ G  +
Sbjct: 188 VSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRY 247

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAING 428
             +      +   I     ++D+  + G +++A ++ R M +  +   W A++    I  
Sbjct: 248 FNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRI-- 305

Query: 429 HGDKSL 434
           H D  L
Sbjct: 306 HRDTQL 311



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 15/263 (5%)

Query: 41  KLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGV 100
           + GL  +  + N ++  C  +  D  Y   +F +I +P++ LWNTMI+G    D   + +
Sbjct: 39  RFGLCHDNYLLN-MILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAI 97

Query: 101 LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK---------FGFDSSVF 151
             Y  M      P+N+TFPF+LK   R + ++ G ++H  V+K          G   +VF
Sbjct: 98  EFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVF 157

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK- 210
           V  +L+  Y  CG ++ AR +FD   + D+V+W AM  GY       E   LF +M+R+ 
Sbjct: 158 VGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQREN 217

Query: 211 --GVLPTSVTIVLVLSACAKLKDLDVGKRA-HRYVKECKIVPNLILENALTDMYAACGEM 267
             G+ P   T + +L  C     +D G+R  +   +   + P++     + D+    G +
Sbjct: 218 KLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLL 277

Query: 268 GFALEIFGNIK-NKDVISWTAIV 289
             A ++  N+    + I W A++
Sbjct: 278 DEAHQLIRNMPMEANAIVWGALL 300


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/703 (32%), Positives = 382/703 (54%), Gaps = 33/703 (4%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+S     E+ + + QIH+  IKLG   N  V N LV   C     +  A ++F+ +   
Sbjct: 146 LLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHC-LYLASQLFKHMLNK 204

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
               +N+++ GYS    ++  + ++L++  S ++P ++TF  LL         +FG+++H
Sbjct: 205 DTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVH 264

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
             VLK  F  +VFV NAL+  Y    +VD    +F    + D +++N + + Y    QF 
Sbjct: 265 GFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFK 324

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E+  LF +++             +LS      +L +G++ H             +ENAL 
Sbjct: 325 ESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALV 384

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA C     A +IF NI  K  +                                WTA
Sbjct: 385 DMYAKCNGDKEAQKIFDNIACKSTVP-------------------------------WTA 413

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           MI  Y++  +  E + +F +M+ + +  D+ T  SIL ACANL ++ LG  + + + ++ 
Sbjct: 414 MISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSG 473

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
             ++++ G+AL+D Y KCG +  A + F EM  ++  +W A+I   A NG+ D +L+ F 
Sbjct: 474 FMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQ 533

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           QM+++   PD V+++ VLSAC+H G V+E   +F  MT  + + P   HY  MVD+L R 
Sbjct: 534 QMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRN 593

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL-DPDNEAVYVLL 557
           G  +EA +++  MP +P+ I+W ++L +CR+H++ E+A+ AA ++  + D  + A Y+ +
Sbjct: 594 GRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINM 653

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            NIYA   +WDN  ++++ + DRG++K P  S +E+    H F A DKSHP+ K+I  K+
Sbjct: 654 SNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKI 713

Query: 618 DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
           + ++ +++  GY PD +    DV E  K  ++  HSE+ A+AF L+++  G  I ++KNL
Sbjct: 714 NALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNL 773

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R C DCH   K++S + +RE+IVRD +RFHHFK G CSC DYW
Sbjct: 774 RACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 205/460 (44%), Gaps = 59/460 (12%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           V R  P P   L +  +     ID+H         ++K+   P+     F +  F     
Sbjct: 13  VLRNSPAPKPSLNSNHL-----IDAH---------IVKTGFNPNTCRSNFQVNNF----- 53

Query: 131 VEFGKELHCHVLKFGFDS----SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           +E G  +H H +   FD     +    N +IS +   G++  AR +FD   +   V+W  
Sbjct: 54  LERGDLVHAHQV---FDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTI 110

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           +  GY +  Q  E  +L+ +M R G+ P  VT+V +LS   +L+  +V  + H +V +  
Sbjct: 111 LIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLG 170

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              NL++ N+L D Y     +  A ++F ++ NKD +++ +++TGY N G  +       
Sbjct: 171 YEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNE------- 223

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
                                   EA+ LF E+  S I+P +FT  ++L+A   L   + 
Sbjct: 224 ------------------------EAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKF 259

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+ V  ++ K     ++FVGNAL+D Y K   V++  ++F EM   D  ++  +I   A 
Sbjct: 260 GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAW 319

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           NG   +S D+F ++        +  +  +LS  T +  +  GR+      I  G      
Sbjct: 320 NGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQ-AITVGANFESR 378

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
               +VD+  +     EA ++  N+  K +++ W A++ A
Sbjct: 379 VENALVDMYAKCNGDKEAQKIFDNIACK-STVPWTAMISA 417


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/592 (36%), Positives = 343/592 (57%), Gaps = 32/592 (5%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           ++ + + LHC V+K    +  F+ + L+S+Y   G    A  +FD     D+V+WN++ S
Sbjct: 53  SISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLIS 112

Query: 190 GYKRVKQFDETRKLFGEME-RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           G+ R         L   M    G+ P  VT++ V+SACA + +LDVGK  H    +  ++
Sbjct: 113 GFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGML 172

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
             + + N+L ++Y  CG +                               + A   F+ M
Sbjct: 173 LEVKVVNSLINLYGKCGCL-------------------------------EAACCLFEGM 201

Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368
             +  V W +M+  ++ +    + +  F  M+ + I  D+ T+VS+L AC NLG  +L E
Sbjct: 202 SVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAE 261

Query: 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAING 428
            V  YI    +  ++ +  AL+D+Y K G +  + +VF  M+  D   WTAM+   A++G
Sbjct: 262 AVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHG 321

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
            G ++++ F  M+R  ++PD VT+  +LSAC+H+G+V+EG+ YF  M   +G+E    HY
Sbjct: 322 RGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHY 381

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
            CMVDLLGR+GHLN+A ++IK+MPM+PNS VWGAL+GACRV  + E+ +  A+++  LDP
Sbjct: 382 SCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDP 441

Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHP 608
            +   Y+ L N+Y+A  +W +  ++R ++ +R + + PGCS IE    +H FV GD+SHP
Sbjct: 442 SDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHP 501

Query: 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPG 668
            T++IY KL+E+    + VG+      V  DV EE KE  + +HSEKLA+AFGL+ +  G
Sbjct: 502 DTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAG 561

Query: 669 VTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + + I KN+R+C DCH  AKL+S++  R +I+RD  RFHHF +G CSC DYW
Sbjct: 562 MPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 190/416 (45%), Gaps = 35/416 (8%)

Query: 17  TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP 76
           + LI+ I TC S+   + +H + IK     +  + ++LV+    E G  K A ++F ++P
Sbjct: 42  SALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVS-SYVELGCTKDALELFDELP 100

Query: 77  RPSVCLWNTMIKGYSR-IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
              +  WN++I G+SR  D      L++    +  ++P+  T   ++        ++ GK
Sbjct: 101 DKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGK 160

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
            +H   +K G    V V N+LI+ Y  CG ++ A  +F+      +V+WN+M + +  + 
Sbjct: 161 CIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMG 220

Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
             ++    F  M R G+     T+V +L AC  L    + +  H Y+    +  NL +  
Sbjct: 221 LAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIAT 280

Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
           AL D+YA  G +  + ++FG + N D ++WTA+++ Y   G                   
Sbjct: 281 ALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHG------------------- 321

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE-WVKTYI 374
                       R REA+  F  M    + PD  T   +L+AC++ G +E G+ + K   
Sbjct: 322 ------------RGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMY 369

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
           +   V+  +   + ++D+  + G +  A ++ + M +  +   W A+I    + G+
Sbjct: 370 EFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGN 425



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 146/332 (43%), Gaps = 21/332 (6%)

Query: 15  QETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKV 71
            E  +I  +  C  + +L   K IH   +K G+L    V N L+     + G ++ AC +
Sbjct: 139 NEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLY-GKCGCLEAACCL 197

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           F  +   S+  WN+M+  +  +   + G+  ++ M ++ +  D  T   LL         
Sbjct: 198 FEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVR 257

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           +  + +H ++L  G D ++ +  AL+  Y   G +  +  +F      D V W AM S Y
Sbjct: 258 KLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSY 317

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
               +  E  + F  M R+GV+P  VT   +LSAC+    ++ GK   + + E   V  L
Sbjct: 318 AMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGV-EL 376

Query: 252 ILE--NALTDMYAACGEMGFALEIFGNI---KNKDVISWTAIVTGYINRGQVDMARQY-- 304
            +E  + + D+    G +  A ++  ++    N  V  W A++     RG +++ ++   
Sbjct: 377 RVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGV--WGALIGACRVRGNIELGKEVAE 434

Query: 305 ----FDQMPERDYVLWTAMIDGYLRVNRFREA 332
                D    R+Y+  + M   Y    ++R+A
Sbjct: 435 RLFSLDPSDSRNYITLSNM---YSAAGQWRDA 463



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 89/188 (47%), Gaps = 6/188 (3%)

Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
           + +++TA +   ++     +   + K+   N  F+G+ L+  Y + G  + A  +F E+ 
Sbjct: 41  VSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELP 100

Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQM-LRASIIPDEVTYVGVLSACTHTGMVDEGR 469
            KD  +W ++I G +        L +  +M     + P+EVT + V+SAC   G +D G+
Sbjct: 101 DKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGK 160

Query: 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529
                + ++ G+         +++L G+ G L  A  + + M ++ + + W +++    V
Sbjct: 161 -CIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQ-SLVSWNSMVA---V 215

Query: 530 HRDAEMAE 537
           H    +AE
Sbjct: 216 HVHMGLAE 223


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 352/618 (56%), Gaps = 37/618 (5%)

Query: 104 LDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           +D L+S  +  D+ T+  L+K    + AV  G  +  H+   G    +F+ N LI+ Y  
Sbjct: 49  MDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVK 108

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
              ++ A  +FD   + +V++W  M S Y + K   +  +L   M R  V P   T   V
Sbjct: 109 FNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSV 168

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L +C  + D+   +  H  + +  +  ++ + +AL D++A  GE   AL +F        
Sbjct: 169 LRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVF-------- 217

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
                                  D+M   D ++W ++I G+ + +R   AL LF+ M+ +
Sbjct: 218 -----------------------DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRA 254

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
               ++ T+ S+L AC  L  LELG  ++ ++   K   D+ + NAL+DMYCKCG +E A
Sbjct: 255 GFIAEQATLTSVLRACTGLALLELG--MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDA 312

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
            RVF +M  +D  TW+ MI GLA NG+  ++L +F +M  +   P+ +T VGVL AC+H 
Sbjct: 313 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHA 372

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G++++G  YF  M   +GI+P   HYGCM+DLLG+AG L++A++++  M  +P+++ W  
Sbjct: 373 GLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LLGACRV R+  +AE AAK+++ LDP++   Y LL NIYA   +WD+  E+R  + DRGI
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           KK PGCS IE+N  +H F+ GD SHPQ  E+  KL+++   L  +GY+P+ + V  D+  
Sbjct: 493 KKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEG 552

Query: 643 EDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRD 702
           E  E ++  HSEKLA+AFGL++      IRI KNLR+C DCH   KL S +  R +++R 
Sbjct: 553 EQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRG 612

Query: 703 KTRFHHFKHGSCSCKDYW 720
             R+HHF+ G CSC DYW
Sbjct: 613 PIRYHHFQDGKCSCGDYW 630



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 183/359 (50%), Gaps = 44/359 (12%)

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           A ++F ++P+ +V  W TMI  YS+   H+  + + + ML+ +VRP+ YT+  +L+    
Sbjct: 115 AHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCN- 173

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
              +   + LHC ++K G +S VFV++ALI  +   GE + A  +FD     D + WN++
Sbjct: 174 --GMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
             G+ +  + D   +LF  M+R G +    T+  VL AC  L  L++G +AH ++   K 
Sbjct: 232 IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI--VKY 289

Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
             +LIL NAL DMY  CG +  AL +F  +K +DVI+W+ +++G        +A+  + Q
Sbjct: 290 DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISG--------LAQNGYSQ 341

Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
                                  EAL LF  M++S  +P+  TIV +L AC++ G LE G
Sbjct: 342 -----------------------EALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378

Query: 368 EW----VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            +    +K     + V+        +ID+  K G ++ A ++  EM    D  TW  ++
Sbjct: 379 WYYFRSMKKLYGIDPVREHY---GCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 134/271 (49%), Gaps = 5/271 (1%)

Query: 21  SPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV 80
           S + +C  M  ++ +H   IK GL ++  V++ L+    ++ G+ + A  VF ++     
Sbjct: 167 SVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVF-AKLGEPEDALSVFDEMVTGDA 225

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
            +WN++I G+++       + ++  M ++    +  T   +L+  T    +E G + H H
Sbjct: 226 IVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVH 285

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
           ++K+  D  + + NAL+  YC CG ++ A  +F+   + DV+TW+ M SG  +     E 
Sbjct: 286 IVKY--DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEA 343

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILENALTD 259
            KLF  M+  G  P  +TIV VL AC+    L+ G    R +K+   I P       + D
Sbjct: 344 LKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMID 403

Query: 260 MYAACGEMGFALEIFGNIK-NKDVISWTAIV 289
           +    G++  A+++   ++   D ++W  ++
Sbjct: 404 LLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 95/195 (48%), Gaps = 5/195 (2%)

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           A+     +Q+  +  D  T   ++  C +  A+  G  +  ++  N  +  +F+ N LI+
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY K   +  A ++F +M +++  +WT MI   +      K+L++   MLR ++ P+  T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           Y  VL +C   GM D    +     I+ G+E +      ++D+  + G   +AL V   M
Sbjct: 165 YSSVLRSC--NGMSDVRMLHCG--IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220

Query: 512 PMKPNSIVWGALLGA 526
            +  ++IVW +++G 
Sbjct: 221 -VTGDAIVWNSIIGG 234


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/708 (34%), Positives = 394/708 (55%), Gaps = 44/708 (6%)

Query: 23  IETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPR 77
           ++ C ++  L+    IH+     GL T+  V   L+     C+  G  +    VF K+P 
Sbjct: 107 LKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPAR---NVFAKMPM 163

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136
             V  WN M+ GY+    + + +   LDM     +RP+  T   LL    +  A+  G  
Sbjct: 164 RDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTS 223

Query: 137 LHCHVLKFGFDSS---VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           +H + L+   + +   V +  AL+  Y  C ++  A  +F      + VTW+A+  G+  
Sbjct: 224 IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVL 283

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
             +  E   LF +M  +G+   S T V   L  CA L DL +G + H  + +  I  +L 
Sbjct: 284 CDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLT 343

Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
             N+L  MYA  G                                ++ A  +FD++  +D
Sbjct: 344 ASNSLLSMYAKAG-------------------------------LINEATMFFDEIAVKD 372

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
            + + A++ G ++  +  EA  +F++MQ  N+ PD  T+VS++ AC++L AL+ G+    
Sbjct: 373 TISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHG 432

Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
            +    +  +  + N+LIDMY KCG ++ +++VF +M  +D  +W  MI G  I+G G +
Sbjct: 433 SVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKE 492

Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
           +  +F  M      PD+VT++ +++AC+H+G+V EG+ +F  MT ++GI P   HY CMV
Sbjct: 493 ATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMV 552

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           DLL R G L+EA + I++MP+K +  VWGALLGACR+H++ ++ +  ++ I +L P+   
Sbjct: 553 DLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTG 612

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            +VLL NI++A  R+D   E+R +   +G KK+PG S IE+NG +H FV GD+SHP +++
Sbjct: 613 NFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRD 672

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IY +LD +  D+K +GY  D S V  D+ EE+KE+A+  HSEKLA+AFG++S     TI 
Sbjct: 673 IYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIF 732

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + KNLR+C DCH   K +++V +R +IVRD  RFHHFK+G CSC ++W
Sbjct: 733 VTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/474 (25%), Positives = 219/474 (46%), Gaps = 38/474 (8%)

Query: 62  KGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121
           +G +  A +VF +IP P    +N +I+ YS +      + +Y  ML+  V P+ YTFPF+
Sbjct: 47  RGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFV 106

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           LK  +  + +  G+ +H H    G  + +FV  ALI  Y  C     AR +F      DV
Sbjct: 107 LKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDV 166

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHR 240
           V WNAM +GY     +        +M+  G L P + T+V +L   A+   L  G   H 
Sbjct: 167 VAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA 226

Query: 241 YVKECKIVPN---LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
           Y     +  N   +++  AL DMYA C ++ +A  +F  +  ++ ++W            
Sbjct: 227 YCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTW------------ 274

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI-RPDEFTIVSILT 356
                              +A+I G++  +R  EA  LF++M    +      ++ S L 
Sbjct: 275 -------------------SALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALR 315

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
            CA+L  L +G  +   I K+ +  D+   N+L+ MY K G + +A   F E+  KD  +
Sbjct: 316 VCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS 375

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
           + A++ G   NG  +++  +F +M   ++ PD  T V ++ AC+H   +  G+     + 
Sbjct: 376 YGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI 435

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
           I+ G+    +    ++D+  + G ++ + +V   MP + + + W  ++    +H
Sbjct: 436 IR-GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIH 487



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 6/251 (2%)

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
           KD   W   +  +I+RGQ+ +ARQ FD++P  D   + A+I  Y  +  F  A+ L+R M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 340 QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399
               + P+++T   +L AC+ L  L  G  +  +     +  D+FV  ALID+Y +C   
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARF 151

Query: 400 EKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML-RASIIPDEVTYVGVLSA 458
             A+ VF +M  +D   W AM+ G A +G    ++     M     + P+  T V +L  
Sbjct: 152 GPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPL 211

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHY---GCMVDLLGRAGHLNEALEVIKNMPMKP 515
               G + +G    A   ++  +E NE        ++D+  +   L  A  V   MP++ 
Sbjct: 212 LAQHGALFQGTSIHA-YCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR- 269

Query: 516 NSIVWGALLGA 526
           N + W AL+G 
Sbjct: 270 NDVTWSALIGG 280


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/633 (35%), Positives = 350/633 (55%), Gaps = 33/633 (5%)

Query: 88  KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD 147
             +SR  S  + + ++   L    RPD+ TF   L    R   +  G+ +       G+ 
Sbjct: 82  AAHSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYK 140

Query: 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM 207
             VFV ++L+  Y   G +  A  +F    + D VTW+ M +G+    Q  +  +++  M
Sbjct: 141 DDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM 200

Query: 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
              GV    V ++ V+ AC   +++ +G   H ++    +  +++   +L DMYA  G +
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327
             A  +FG + +++ +SW+A+++G+   GQ D                            
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSD---------------------------- 292

Query: 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
              EAL LFR MQ S I+PD   +VS L AC+N+G L+LG  V  +I + +   +  +G 
Sbjct: 293 ---EALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR-RFDFNCILGT 348

Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
           A IDMY KCG +  AQ +F  +  +D   W AMI     +G G  +L +F +M    + P
Sbjct: 349 AAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRP 408

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           D  T+  +LSA +H+G+V+EG+ +F  M     I P E HY C+VDLL R+G + EA ++
Sbjct: 409 DHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDL 468

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567
           + +M  +P   +W ALL  C  ++  E+ E  A  ILEL PD+  V  L+ N+YAA  +W
Sbjct: 469 LTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKW 528

Query: 568 DNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFV 627
           D  R++R+++ D G KK PGCS IE+ G  H FV  D+SHPQ +EI  K+ ++  +++ +
Sbjct: 529 DKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKM 588

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           GY+P    V+ D+ EE KE+ +  HSE+LA+AFGL+++GPG  + I+KNLR+C DCH   
Sbjct: 589 GYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAI 648

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           K +S + DRE++VRD  RFHHFK G CSC+DYW
Sbjct: 649 KYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 200/456 (43%), Gaps = 44/456 (9%)

Query: 9   PPSTLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDM 65
           PP+     T     +  C  +  L+    +  +    G   +  V + L+    +  G M
Sbjct: 101 PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLY-ARWGAM 159

Query: 66  KYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
             A KVF ++PR     W+TM+ G+       + + +Y  M +  V+ D      +++  
Sbjct: 160 GDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQAC 219

Query: 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185
           T    V  G  +H H+L+ G    V    +L+  Y   G +D+A  +F +    + V+W+
Sbjct: 220 TAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWS 279

Query: 186 AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
           AM SG+ +  Q DE  +LF  M+  G+ P S  +V  L AC+ +  L +G+  H ++   
Sbjct: 280 AMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR- 338

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT--GYINRGQVDMARQ 303
           +   N IL  A  DMY+ CG +  A  +F  I ++D+I W A++   G   RGQ      
Sbjct: 339 RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQ------ 392

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
                                      +ALTLF+EM  + +RPD  T  S+L+A ++ G 
Sbjct: 393 ---------------------------DALTLFQEMNETGMRPDHATFASLLSALSHSGL 425

Query: 364 LELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT-WTAMI 421
           +E G+ W    ++  K+         L+D+  + G VE+A  +   M  +     W A++
Sbjct: 426 VEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALL 485

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            G   N   +    +   +L   + PD+V  + ++S
Sbjct: 486 SGCLNNKKLELGESIADNIL--ELQPDDVGVLALVS 519



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 157/386 (40%), Gaps = 87/386 (22%)

Query: 253 LENALTDMYAACGEMGF--------------------------------ALEIFGNI--- 277
           L ++L   YA  G++                                  AL +F  +   
Sbjct: 44  LISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGSPASALRVFRALPPA 103

Query: 278 KNKDVISWTAIVTGYIN----RGQVDMARQYFDQMPERD----------YVLWTAMIDG- 322
              D  ++T  ++        RG   +  + FD   + D          Y  W AM D  
Sbjct: 104 ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAV 163

Query: 323 --YLRVNRFREALT-------------------LFREMQTSNIRPDEFTIVSILTACANL 361
             ++R+ R R+ +T                   ++R M+   ++ DE  ++ ++ AC   
Sbjct: 164 KVFVRMPR-RDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAA 222

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
             + +G  V  ++ ++ ++ D+    +L+DMY K G ++ A RVF  M+ ++  +W+AMI
Sbjct: 223 RNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMI 282

Query: 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481
            G A NG  D++L +F  M  + I PD    V  L AC++ G +  GR         HG 
Sbjct: 283 SGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSV-------HGF 335

Query: 482 EPNEAHYGCM-----VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
                 + C+     +D+  + G L  A +++ NM    + I+W A++  C  H   + A
Sbjct: 336 IVRRFDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGRGQDA 394

Query: 537 EMAAKQILE--LDPDNEAVYVLLCNI 560
               +++ E  + PD+     LL  +
Sbjct: 395 LTLFQEMNETGMRPDHATFASLLSAL 420


>gi|302782465|ref|XP_002973006.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
 gi|300159607|gb|EFJ26227.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
          Length = 698

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/696 (34%), Positives = 383/696 (55%), Gaps = 41/696 (5%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS--DVRPDNYTFPF 120
           G ++ A  VF  +P  +   W  +I  Y      +  + +Y  +++S  +++ D + F  
Sbjct: 6   GRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAFIFSS 65

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +L    R   +E G E+H  ++K G    V +QNAL++ Y  CG +D A+ +FD     D
Sbjct: 66  VLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRD 125

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL--------------------------- 213
           VV+WNAM S        +   K++ EM    VL                           
Sbjct: 126 VVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYREMIL 185

Query: 214 ---PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
              P + T+  VL+AC +L DL  G        +  +  + ++   L ++YA  G++  A
Sbjct: 186 SVRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARFGDVIAA 245

Query: 271 LEI-FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329
            E+ F ++K++ V+SW A+VT +    +VD A + F +MP++  + W AMI G+ +  R 
Sbjct: 246 REVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAGFGQNGRP 305

Query: 330 REALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389
           ++AL LFR M    ++P   T  S+L ACANL A  LG ++   +D+   K DI V N++
Sbjct: 306 KQALELFRRMDLEGLQPSRMTYCSVLDACANLTASSLGRFICDGMDEALAK-DISVANSI 364

Query: 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
            +MY KCG  E A++ F EM  +D  +WTA+I   + NG+  ++LD+F  M++A + P+ 
Sbjct: 365 CNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYSQNGYSSEALDIFRIMVQAGVEPNG 424

Query: 450 VTYVGVLSACTHTGMVDEGREYFADMTIQ--HGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
           +T +  LSAC+H  + DEG + F+ +     +G+  NE+H+ C +DLLGRAG+L +A  +
Sbjct: 425 ITLINTLSACSHGALFDEGSDIFSSLVSGDYYGVTANESHFLCAIDLLGRAGYLKDAETL 484

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD---NEAVYVLLCNIYAAC 564
           I  MP K  ++ W +LL ACR  RD + A   A  + ELD     + A YV+L NIYA+ 
Sbjct: 485 ITKMPFKAGAVAWTSLLSACRTFRDLKRAGRVANHLFELDESSIKDPAPYVMLSNIYASA 544

Query: 565 NRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDL 624
                  +LR  I  +  KK PG S I + G  +EF + D++HP+  + Y +L  +   +
Sbjct: 545 GDRAAEMKLRDQIRIKCRKKLPGKSTITIKGQTNEFYSLDETHPRRDDAYNELRRLFQKM 604

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           K  GY+PD      ++ EE+ E+++  HSEKLA+AFG++++ P  ++ IVKNLR+C DCH
Sbjct: 605 KEAGYVPDTR--IAEMEEEETEQSLSYHSEKLALAFGVLNTPPEASLCIVKNLRVCSDCH 662

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + K +S   +R++ VRD TRFHHF++G CSC+D W
Sbjct: 663 NVIKFLSKHLNRKIAVRDATRFHHFENGFCSCRDCW 698



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 186/398 (46%), Gaps = 38/398 (9%)

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL- 221
           CG ++ AR +FD     +  +W  + S Y    +  E   L+  + R      +   +  
Sbjct: 5   CGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAFIFS 64

Query: 222 -VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK 280
            VL+ACA+LK L+ G   H  + +  +  ++ L+NAL  MYA CG +  A ++F  I ++
Sbjct: 65  SVLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHR 124

Query: 281 DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
           DV+SW A+V+     G +++A + + +M   D + W+ MI         REAL L+REM 
Sbjct: 125 DVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYREMI 184

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD-- 398
            S +RP+  T+ ++L AC  LG L  G  V+    ++ +  D  VG  L+++Y + GD  
Sbjct: 185 LS-VRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARFGDVI 243

Query: 399 ------------------------------VEKAQRVFREMLRKDKFTWTAMIVGLAING 428
                                         V++A+++FREM  K   +W AMI G   NG
Sbjct: 244 AAREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAGFGQNG 303

Query: 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
              ++L++F +M    + P  +TY  VL AC +      GR  F    +   +  + +  
Sbjct: 304 RPKQALELFRRMDLEGLQPSRMTYCSVLDACANLTASSLGR--FICDGMDEALAKDISVA 361

Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
             + ++ G+ G    A +    M  + + + W A++ A
Sbjct: 362 NSICNMYGKCGLPELARQTFLEMTYR-DVVSWTAIIAA 398



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 37/269 (13%)

Query: 292 YINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QTSNIRPDEF 349
           Y + G+++ AR  FD MP R+   W  +I  Y+   + +EAL L+R +   ++ I+ D F
Sbjct: 2   YRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAF 61

Query: 350 TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVF--- 406
              S+L ACA L  LE G  +   I K  VK D+ + NAL+ MY KCG +++A++VF   
Sbjct: 62  IFSSVLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRI 121

Query: 407 ----------------------------REMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
                                       +EM+  D   W+ MI   A+ GH  ++L+++ 
Sbjct: 122 THRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYR 181

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M+  S+ P+  T   VL+ACT  G +  G     D  IQ G++ +      +V+L  R 
Sbjct: 182 EMI-LSVRPNASTLATVLAACTRLGDLSSG-ALVRDGAIQSGLDRDAVVGTTLVNLYARF 239

Query: 499 GHLNEALEVIKNMPMKPNSIV-WGALLGA 526
           G +  A EV+ +  MK  ++V W A++ A
Sbjct: 240 GDVIAAREVLFD-SMKDRTVVSWNAMVTA 267



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 194/486 (39%), Gaps = 112/486 (23%)

Query: 11  STLTQETPLI--SPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTFCC------ 59
           ST  Q    I  S +  C  +  L+Q   IH + +K G+  +  +QN LVT         
Sbjct: 53  STEIQADAFIFSSVLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRID 112

Query: 60  ------------------------SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDS 95
                                   +E G ++ A K+++++    V  W+TMI   +    
Sbjct: 113 RAKQVFDRITHRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGH 172

Query: 96  HKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA 155
            +  + +Y +M+ S VRP+  T   +L   TR   +  G  +    ++ G D    V   
Sbjct: 173 DREALELYREMILS-VRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTT 231

Query: 156 LISTYCLCGEVDMARGIFDVSYKD-DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL- 213
           L++ Y   G+V  AR +   S KD  VV+WNAM + + +  + DE  KLF EM  K V+ 
Sbjct: 232 LVNLYARFGDVIAAREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVIS 291

Query: 214 ------------------------------PTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
                                         P+ +T   VL ACA L    +G+     + 
Sbjct: 292 WNAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACANLTASSLGRFICDGMD 351

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
           E  +  ++ + N++ +MY  CG    A + F  +  +DV+SWTAI+  Y   G       
Sbjct: 352 EA-LAKDISVANSICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYSQNGYSS---- 406

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
                                      EAL +FR M  + + P+  T+++ L+AC++   
Sbjct: 407 ---------------------------EALDIFRIMVQAGVEPNGITLINTLSACSHGAL 439

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNA-------LIDMYCKCGDVEKAQRVFREM-LRKDKF 415
            + G    + I  + V  D +   A        ID+  + G ++ A+ +  +M  +    
Sbjct: 440 FDEG----SDIFSSLVSGDYYGVTANESHFLCAIDLLGRAGYLKDAETLITKMPFKAGAV 495

Query: 416 TWTAMI 421
            WT+++
Sbjct: 496 AWTSLL 501



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 38/208 (18%)

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS--IIPDE 449
           MY  CG +E A+ VF  M  +++F+W  +I      G   ++L ++  ++R+S  I  D 
Sbjct: 1   MYRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADA 60

Query: 450 VTYVGVLSACTHTGMVDEGREYF---------ADMTIQHGIEPNEAHYG----------- 489
             +  VL+AC     +++G E            D+ +Q+ +    A  G           
Sbjct: 61  FIFSSVLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDR 120

Query: 490 ----------CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA-CRVHRDAEMAEM 538
                      MV     AGHL  AL++ + M +  + + W  ++ A      D E  E+
Sbjct: 121 ITHRDVVSWNAMVSANAEAGHLEVALKIYQEM-VSADVLCWSTMISAEAMAGHDREALEL 179

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNR 566
             + IL + P+       L  + AAC R
Sbjct: 180 YREMILSVRPNAST----LATVLAACTR 203


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/588 (38%), Positives = 343/588 (58%), Gaps = 33/588 (5%)

Query: 135 KELHCHVLKFGFDSSVFVQNALIS-TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           +++H  ++  G   +  +   L+S  Y     +   R +F    K D   ++++ +   +
Sbjct: 36  QQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSK 95

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                E+   +  M    +  ++ T   V+ + A L    +G+  H +V  C        
Sbjct: 96  FSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYIC-------- 147

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
                         G+ L         D     A+V+ Y   G V +AR+ FD+MPE+  
Sbjct: 148 --------------GYGL---------DAYVQAALVSFYAKSGHVMIARKVFDKMPEKTV 184

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           V W +MI GY +    +EA+ LF  MQ   ++PD  T VS+L+ACA +GA+ LG WV  Y
Sbjct: 185 VAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEY 244

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           I +N    ++ +G AL++MY +CG+V KA+ VF  M  K+   WTAMI G  ++GHG ++
Sbjct: 245 IARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQA 304

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           +++F++M      P+ VT+V VLSAC H G+VDEGR+ F  M  ++G+ P+  H  CMVD
Sbjct: 305 IELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVD 364

Query: 494 LLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           +LGRAGHLNEA + IKN  P +P   VW A+LGAC++H++ ++    A+ +L ++P+N  
Sbjct: 365 MLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPG 424

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YV+L NIYA   R D   ++R +++   +KK  G S I+++  V+ F  GDKSHP+T +
Sbjct: 425 HYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQ 484

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           IYL LDE+ S  +  GY+P    V  +V EE++E A+  HSEKLA+AFGL+ +G GV IR
Sbjct: 485 IYLYLDELMSRCREAGYIPASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIR 544

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           IVKNLRMC DCH   K +S++ +RE+ VRD+ RFHHFK GSCSC+DYW
Sbjct: 545 IVKNLRMCEDCHTAIKYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 216/433 (49%), Gaps = 44/433 (10%)

Query: 32  LKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS 91
           L+QIH++ I  GL    ++  KL++F  +    + Y  ++F  IP+P   L++++I   S
Sbjct: 35  LQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTS 94

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           +    +  +L Y  ML +++   NYTF  ++K      A   G+ +HCHV   G+    +
Sbjct: 95  KFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAY 154

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           VQ AL+S Y   G V +AR +FD   +  VV WN+M SGY++     E  +LF  M+  G
Sbjct: 155 VQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLG 214

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V P S T V +LSACA++  + +G   H Y+       N++L  AL +MY+ CG +  A 
Sbjct: 215 VKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAR 274

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           E+F +++ K++++WTA+++GY   G                                  +
Sbjct: 275 EVFDSMEEKNIVAWTAMISGYGMHGHGS-------------------------------Q 303

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-----KVKNDIFVG 386
           A+ LF EM     RP+  T V++L+ACA+ G ++ G  + T + +       V++ +   
Sbjct: 304 AIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQV--- 360

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKD--KFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
             ++DM  + G + +A +  +    K+     WTAM+    ++ + D  +++   +L  S
Sbjct: 361 -CMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--S 417

Query: 445 IIPDEVTYVGVLS 457
           I P+   +  +LS
Sbjct: 418 IEPENPGHYVMLS 430


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/622 (36%), Positives = 345/622 (55%), Gaps = 36/622 (5%)

Query: 135 KELHCHVLKFGF--DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
           K++H  + K G   D  VF +  L     +   +  A  +F      D    N +     
Sbjct: 19  KQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTLIRSLS 78

Query: 193 RVKQFDETRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
             +    +   F ++ R+  L P S T    L A A  + L  G + H          ++
Sbjct: 79  LSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHI 138

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVT--------------------- 290
            +   L  MYA CG+ G A  +F  +   +V++W A++T                     
Sbjct: 139 FVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVR 198

Query: 291 ----------GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340
                     GY   G++ +AR+ F +MP RD V W+ MI G+     F EA   FRE+ 
Sbjct: 199 NLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELL 258

Query: 341 TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
              IR +E ++  +L+ACA  GA E G+ +  +++K        V NALID Y KCG+V 
Sbjct: 259 REEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVA 318

Query: 401 KAQRVFREM-LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
            A+ VF+ M + +   +WT++I GLA++G G++++ +F +M  + + PD +T++ +L AC
Sbjct: 319 MARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYAC 378

Query: 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIV 519
           +H+G+V+EG   F+ M   +GIEP   HYGCMVDL GRA  L +A E I  MP+ PN+I+
Sbjct: 379 SHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAII 438

Query: 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579
           W  LLGAC +H + EMAE+   ++ E+DPDN   +VLL N+YA   +W +   +R+ + +
Sbjct: 439 WRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTE 498

Query: 580 RGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF-VGYMPDISEVFL 638
             +KKTPG SMIE++ V++ FVAG+K +  T+E + KL E+   L+   GY P +  V  
Sbjct: 499 HSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLH 558

Query: 639 DVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREV 698
           D+ EE+KE +V +HSEKLA AFG+     G  +RIVKNLR+C DCH + KL+S VY  E+
Sbjct: 559 DIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEI 618

Query: 699 IVRDKTRFHHFKHGSCSCKDYW 720
           IVRD++RFH FK G CSC+DYW
Sbjct: 619 IVRDRSRFHSFKDGFCSCRDYW 640



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 213/505 (42%), Gaps = 110/505 (21%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD-MKYACKVFRK 74
           E   +S +  C S+   KQIH+Q  K GL T+P V  KL+  C     D + YA ++F  
Sbjct: 2   EEAWVSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHH 61

Query: 75  IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEF 133
            P P   + NT+I+  S   +  + +  ++ + +   + PD++TF F LK       +  
Sbjct: 62  FPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRP 121

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA------- 186
           G +LH    + GFD+ +FV   LIS Y  CG+   AR +FD   + +VVTWNA       
Sbjct: 122 GIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFR 181

Query: 187 ------------------------MFSGYKRVKQFDETRKLFGEME-------------- 208
                                   M +GY +  +    R++F EM               
Sbjct: 182 CGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGF 241

Query: 209 -----------------RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
                            R+ +    V++  VLSACA+    + GK  H +V++   +   
Sbjct: 242 AHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVG 301

Query: 252 ILENALTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
            + NAL D Y+ CG +  A  +F N+   + ++SWT+I+ G    G  +           
Sbjct: 302 SVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGE----------- 350

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
                               EA+ LF EM+ S +RPD  T +S+L AC++ G +E G  +
Sbjct: 351 --------------------EAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGL 390

Query: 371 KTYIDKNKVKNDIFVGNA------LIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVG 423
            +     K+KN   +  A      ++D+Y +   ++KA     EM +  +   W  ++  
Sbjct: 391 FS-----KMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGA 445

Query: 424 LAINGHGDKSLDMFSQMLRASIIPD 448
            +I  HG+  +    +   A + PD
Sbjct: 446 CSI--HGNIEMAELVKARLAEMDPD 468


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/753 (32%), Positives = 386/753 (51%), Gaps = 104/753 (13%)

Query: 21  SPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S ++ C  +      K++HS      +  +  +  KLV+F  +  GD+K   +VF  + +
Sbjct: 104 SVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYAT-CGDLKEGRRVFDTMEK 162

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
            +V LWN M+  Y++I   K  + ++  M++  +           +G   + A E     
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI-----------EGKRPESAFE----- 206

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
                                             +FD     DV++WN+M SGY      
Sbjct: 207 ----------------------------------LFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
           +    ++ +M   G+     TI+ VL  CA    L +GK  H    +      +   N L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER------ 311
            DMY+ CG++  AL +F  +  ++V+SWT+++ GY   G+ D A +   QM +       
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDV 352

Query: 312 -----------------------DYV----------LWTAMIDGYLRVNRFREALTLFRE 338
                                  DY+          +  A++D Y +      A ++F  
Sbjct: 353 VAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFST 412

Query: 339 MQTSNI----------RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
           M   +I          +PD  T+  +L ACA+L ALE G+ +  YI +N   +D  V NA
Sbjct: 413 MVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANA 472

Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
           L+D+Y KCG +  A+ +F  +  KD  +WT MI G  ++G+G++++  F++M  A I PD
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD 532

Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
           EV+++ +L AC+H+G++++G  +F  M     IEP   HY CMVDLL R G+L++A E +
Sbjct: 533 EVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFM 592

Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
           + +P+ P++ +WGALL  CR + D E+AE  A+++ EL+P+N   YVLL NIYA   +W+
Sbjct: 593 ETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWE 652

Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDK-SHPQTKEIYLKLDEMTSDLKFV 627
             + LR+ I  +G++K PGCS IE+ G V+ FV+G+  SHP +K I   L +M   +K  
Sbjct: 653 EVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEE 712

Query: 628 GYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMA 687
           G+ P      ++  E  KE A+  HSEKLAMAFGL++  P  TIR+ KNLR+C DCH MA
Sbjct: 713 GHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMA 772

Query: 688 KLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           K +S    RE+++RD  RFHHFK G CSC+ +W
Sbjct: 773 KFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 127/317 (40%), Gaps = 62/317 (19%)

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           + A I  + ++     A+ L    Q S +    +   S+L  CA L +   G+ V + I 
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCQKSELETKTYG--SVLQLCAGLKSFTDGKKVHSIIK 126

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK----------------------- 412
            N V  D  +G  L+  Y  CGD+++ +RVF  M +K                       
Sbjct: 127 SNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 413 ----------------------------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
                                       D  +W +MI G   NG  ++ L ++ QM+   
Sbjct: 187 LFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           I  D  T + VL  C ++G +  G+   + + I+   E        ++D+  + G L+ A
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHS-LAIKSSFERRINFSNTLLDMYSKCGDLDGA 305

Query: 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL-LCNIYAA 563
           L V + M  + N + W +++      RD   ++ A K + +++ +   + V+ + +I  A
Sbjct: 306 LRVFEKMGER-NVVSWTSMIAG--YTRDGR-SDGAIKLLQQMEKEGVKLDVVAITSILHA 361

Query: 564 CNR---WDNFRELRQMI 577
           C R    DN +++   I
Sbjct: 362 CARSGSLDNGKDVHDYI 378


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/503 (42%), Positives = 311/503 (61%), Gaps = 34/503 (6%)

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           P   T   VL ACA L  +  G++ H  V +     NL + N+L DMY            
Sbjct: 90  PDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMY------------ 137

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM--PERDYVLWTAMIDGYLRVNRFRE 331
                                 G + +AR  FD+M   +R+ V W AMI GY +  ++ +
Sbjct: 138 -------------------FKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSD 178

Query: 332 ALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
           A+ +FR MQ    + P++ T+VS+L ACA+LGAL+LG+W+  +I + ++   +F+GNAL 
Sbjct: 179 AIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALA 238

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMY KCG + +A+RVF +M  +D  +W+ +I GLA+ GH D++   F +ML     P++V
Sbjct: 239 DMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDV 298

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
            ++G+L+ACTH G+V +G   F  M  ++G+ P   HYGC+VDLL RAG L++A ++I +
Sbjct: 299 VFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISS 358

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           MPMKPN I+WGALLG CR++RD+   +   + ILELD D+   YV L N+Y++  R D+ 
Sbjct: 359 MPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDA 418

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
            + R  + + G+ KTPGCS IE++  VHEF  GD SHP++ +IY  + E+   +K  GY 
Sbjct: 419 AKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYK 478

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           P    V   + EE+KE A+  HSEKLA+AFGLIS+  G TIR+VKNLR+C DCH  AK++
Sbjct: 479 PKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKII 538

Query: 691 SMVYDREVIVRDKTRFHHFKHGS 713
           S +  RE+IVRD++RFHHFK G+
Sbjct: 539 SGIVKREIIVRDRSRFHHFKDGA 561



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 203/418 (48%), Gaps = 46/418 (11%)

Query: 29  MHQLKQIHSQTIKLGL---LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT 85
           M Q+ QI +Q I   +   + +P +    +   C++  +++ A  +F  +  P++   N 
Sbjct: 1   MAQVLQIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNA 60

Query: 86  MIKGYSRIDSHKNGVLIYLDMLKSDVR---PDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
            +K  ++ +SH    + + +   S      PD +TF  +LK       V  G+++H  V 
Sbjct: 61  TLKALAQ-NSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVT 119

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD--VVTWNAMFSGYKRVKQFDET 200
           K GF+S++FV+N+LI  Y   G + +AR +FD  +  D  VV WNAM +GY + +++ + 
Sbjct: 120 KQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDA 179

Query: 201 RKLFGEMER-KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
            ++F  M++  GV+P  VT+V VL ACA L  LD+GK    ++   ++   L L NAL D
Sbjct: 180 IEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALAD 239

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA CG +  A  +F  ++ +DVISW+ I+ G    G  D                    
Sbjct: 240 MYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHAD-------------------- 279

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN-K 378
                      EA   F EM     +P++   + +LTAC + G ++ G      +DK   
Sbjct: 280 -----------EAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYG 328

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAI---NGHGDK 432
           V   +     ++D+  + G+++KA+ +   M ++ +   W A++ G  I   +G G +
Sbjct: 329 VSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQR 386


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/547 (40%), Positives = 331/547 (60%), Gaps = 43/547 (7%)

Query: 184 WNAMFSGYKR-VKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           WNA+     R   +      L+  M E+  V+    T   VL ACA L  L  G++ H  
Sbjct: 94  WNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQ 153

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           + +     ++ + N+L   YA C                                ++D A
Sbjct: 154 ILKLGFDSDVYINNSLVHFYATCD-------------------------------RLDFA 182

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
           +  FD+M ER  V W  +ID ++R   F  AL LF EMQ     PD +TI SI  ACA +
Sbjct: 183 KGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKF-FEPDGYTIQSIANACAGM 241

Query: 362 GALELGEWVKTYI----DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
           G+L LG W   ++    D ++V ND+ +  +L+DMYCKCG +E A ++F  M ++D  +W
Sbjct: 242 GSLSLGMWAHVFLLKKFDADRV-NDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSW 300

Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
            +MI+G + +G    +L+ F  M+R   ++P+ +T+VGVLSAC H G+V EGR YF  M 
Sbjct: 301 NSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMV 360

Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGAC-RVHRDAEM 535
            ++ I+P   HYGC+VDLL RAG ++EAL+V+ NMPM+P+ ++W +LL AC + +   E+
Sbjct: 361 TEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVEL 420

Query: 536 AEMAAKQILELDPD-NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           +E  A+++LE +      VYVLL  +YA+ +RW++   +R+++ D+G+ K PGCS IE++
Sbjct: 421 SEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEID 480

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV-FLDVGEEDKERAVYQHS 653
           GV HEF AGD SHPQT+EIY  LD +   ++ VGY PD S+   +D   + K+ ++  HS
Sbjct: 481 GVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHS 540

Query: 654 EKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGS 713
           E+LA+AFGL+ + PG+ IRI KNLR+C +CH++ KL+S V++RE+IVRD+ RFHHFK G+
Sbjct: 541 ERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGA 600

Query: 714 CSCKDYW 720
           CSC DYW
Sbjct: 601 CSCMDYW 607



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 218/426 (51%), Gaps = 43/426 (10%)

Query: 6   SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPT---VQNKLVTFCCSEK 62
           +IS   + T    L+  + +C  + QLKQ+H+QTI+     +P    + ++++ F  S  
Sbjct: 16  AISNSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHF--SSL 73

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSR-IDSHKNGVLIYLDML-KSDVRPDNYTFPF 120
            D++YA +VF +I  P+  +WN +I+  +R  D  ++ + +Y  ML +  V  D +TFPF
Sbjct: 74  HDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPF 133

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           +LK      A+  G+++H  +LK GFDS V++ N+L+  Y  C  +D A+G+FD   +  
Sbjct: 134 VLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERS 193

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
           +V+WN +   + R  +FD    LFGEM+ K   P   TI  + +ACA +  L +G  AH 
Sbjct: 194 LVSWNVVIDAFVRFGEFDAALNLFGEMQ-KFFEPDGYTIQSIANACAGMGSLSLGMWAHV 252

Query: 241 YVK---ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
           ++    +   V +++L  +L DMY  CG +  AL++F  +  +DV SW +++ G+   G+
Sbjct: 253 FLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGE 312

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
           V  A +YF  M                              ++T  + P+  T V +L+A
Sbjct: 313 VAAALEYFGCM------------------------------VRTEKLMPNAITFVGVLSA 342

Query: 358 CANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKF 415
           C + G +  G  +    + + K+K ++     L+D+  + G +++A  V   M +R D  
Sbjct: 343 CNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLV 402

Query: 416 TWTAMI 421
            W +++
Sbjct: 403 IWRSLL 408


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 342/623 (54%), Gaps = 37/623 (5%)

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
           L +L  +  P   T+  L+       ++  G  +H H+L  G D   F+   LI  Y   
Sbjct: 66  LRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDL 125

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G VD AR +FD + K  +  WNA+F         +E   L+ +M R GV     T   VL
Sbjct: 126 GSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVL 185

Query: 224 SACAKLK----DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN 279
            AC   +     L  GK  H ++       ++ +   L DMYA                 
Sbjct: 186 KACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYA----------------- 228

Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 339
                           G VD A   F+ MP R+ V W+AMI  Y +  +  EAL  FREM
Sbjct: 229 --------------RFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREM 274

Query: 340 --QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
             +T +  P+  T+VS+L ACA+L ALE G  +  YI +  + + + V +AL+ MY +CG
Sbjct: 275 MTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCG 334

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            ++  QRVF  M  +D  +W ++I    ++G+G K++ +F +ML     P  VT+V VL 
Sbjct: 335 KLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLG 394

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           AC+H G+V+EG+  F  M   HGI+P   HY CMVDLLGRA  L+EA +++++M  +P  
Sbjct: 395 ACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 454

Query: 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
            VWG+LLG+CR+H + E+AE A++++  L+P N   YVLL +IYA    WD  + +++++
Sbjct: 455 KVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLL 514

Query: 578 LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVF 637
             RG++K PG   +E+   ++ FV+ D+ +P  ++I+  L ++  D+K  GY+P    V 
Sbjct: 515 EHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVL 574

Query: 638 LDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDRE 697
            ++  E+KER V  HSEKLA+AFGLI++  G  IRI KNLR+C DCH   K +S   ++E
Sbjct: 575 YELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKE 634

Query: 698 VIVRDKTRFHHFKHGSCSCKDYW 720
           ++VRD  RFH FK+G CSC DYW
Sbjct: 635 ILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 206/435 (47%), Gaps = 45/435 (10%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           S  S PS  T E  LI       S+    ++H   +  G   +P +  KL+    S+ G 
Sbjct: 70  SQESSPSQQTYEL-LILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMY-SDLGS 127

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLK 123
           + YA KVF K  + ++ +WN + +  + +  H   VL +Y  M +  V  D +T+ ++LK
Sbjct: 128 VDYARKVFDKTRKRTIYVWNALFRALT-LAGHGEEVLGLYWKMNRIGVESDRFTYTYVLK 186

Query: 124 GF-----TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
                  T D   + GKE+H H+ + G++S V++   L+  Y   G VD A  +F+    
Sbjct: 187 ACVASECTADHLTK-GKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPV 245

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEM--ERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
            +VV+W+AM + Y +  +  E  + F EM  E K   P SVT+V VL ACA L  L+ G+
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGR 305

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
             H Y+    +   L + +AL  MY  CG++     +F  + ++DV+SW ++++ Y    
Sbjct: 306 LIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSY---- 361

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
                                  + GY      R+A+ +F EM  +   P   T VS+L 
Sbjct: 362 ----------------------GVHGY-----GRKAIQIFEEMLANGASPTPVTFVSVLG 394

Query: 357 ACANLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
           AC++ G +E G+ + ++    + +K  +     ++D+  +   +++A ++ ++M      
Sbjct: 395 ACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 454

Query: 415 FTWTAMIVGLAINGH 429
             W +++    I+G+
Sbjct: 455 KVWGSLLGSCRIHGN 469



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 123/271 (45%), Gaps = 13/271 (4%)

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           +I    +  + ++AL +  +  +    P + T   ++  C +  +L  G  V  +I  N 
Sbjct: 52  LIQSLCKEGKLKQALRVLSQESS----PSQQTYELLILCCGHRSSLSDGLRVHRHILDNG 107

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
              D F+   LI MY   G V+ A++VF +  ++  + W A+   L + GHG++ L ++ 
Sbjct: 108 SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYW 167

Query: 439 QMLRASIIPDEVTYVGVLSACTHT----GMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
           +M R  +  D  TY  VL AC  +      + +G+E  A +T + G   +      +VD+
Sbjct: 168 KMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLT-RRGYNSHVYIMTTLVDM 226

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
             R G ++ A  V   MP++ N + W A++     +  A  A    ++++    D+    
Sbjct: 227 YARFGCVDYASYVFNGMPVR-NVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNS 285

Query: 555 VLLCNIYAACNRWDNFRELRQM---ILDRGI 582
           V + ++  AC       + R +   IL RG+
Sbjct: 286 VTMVSVLQACASLAALEQGRLIHGYILRRGL 316



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 109/267 (40%), Gaps = 46/267 (17%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTF 57
           M + +  S P+++T    ++S ++ C S+  L+Q   IH   ++ GL +   V + LVT 
Sbjct: 274 MMTETKDSSPNSVT----MVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTM 329

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
                G +    +VF ++    V  WN++I  Y      +  + I+ +ML +   P   T
Sbjct: 330 Y-GRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVT 388

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           F  +L   + +  VE GK L        F+S                   M R   D   
Sbjct: 389 FVSVLGACSHEGLVEEGKRL--------FES-------------------MWR---DHGI 418

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           K  V  +  M     R  + DE  K+  +M  +   P       +L +C    ++++ +R
Sbjct: 419 KPQVEHYACMVDLLGRANRLDEAAKMVQDMRTE---PGPKVWGSLLGSCRIHGNVELAER 475

Query: 238 AHR--YVKECKIVPNLILENALTDMYA 262
           A R  +  E K   N +L   L D+YA
Sbjct: 476 ASRRLFALEPKNAGNYVL---LADIYA 499


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 351/607 (57%), Gaps = 7/607 (1%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVC 81
           +  C S+H+L Q+H+  +  G+  +      L ++C     G + YA ++F +IP P   
Sbjct: 19  LRRCGSVHRLNQLHAHLVVHGV--DDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRF 76

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           ++N++I+ Y      +  + +   M++  + P+ +T PFLLK   R  A E     H  V
Sbjct: 77  VYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           +K GF   VFV NAL+ +Y   G +  +R  FD     +VV+WN+M +GY +     E  
Sbjct: 137 VKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREAC 196

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY--VKECKIVPNLILENALTD 259
            LF  M R+G+L    T+V +L AC+   +L+ GK  H +  V+ C+I  +LIL NAL D
Sbjct: 197 SLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRI--DLILANALVD 254

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MY  CG++  A   F  +  K+ +SWT+++     R  +D AR +F+Q+PE+  + W AM
Sbjct: 255 MYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAM 314

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I  Y++  RF EAL L+  M+   + PDEFT+ ++L+AC  LG L  G+ +   I  N  
Sbjct: 315 ISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFH 374

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
              + + N+L+DMY +CG V+ A  +F EM  K+  +W A+I  LA++G    +L  F  
Sbjct: 375 NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRS 434

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M+  +  PDE+T+V +LSAC H G+++ G+ YF  M   + ++P   HY CMVDLLGR G
Sbjct: 435 MVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGG 494

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
            L +A+++IK+MPM+P+ +VWGALLGACR+H   ++ +   KQ+LEL+  +  ++VL+ N
Sbjct: 495 QLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISN 554

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           +    ++W++ + LR+++ + G+KK  G S IE N  +HE  A    H  + ++Y+  D 
Sbjct: 555 MLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHESSDDMYVGDDR 614

Query: 620 MTSDLKF 626
           +   L F
Sbjct: 615 LPHHLVF 621


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/703 (32%), Positives = 382/703 (54%), Gaps = 33/703 (4%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           L+S     E+ + + QIH+  IKLG   N  V N LV   C     +  A ++F+ +   
Sbjct: 146 LLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHC-LYLASQLFKHMLNK 204

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
               +N+++ GYS    ++  + ++L++  S ++P ++TF  LL         +FG+++H
Sbjct: 205 DTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVH 264

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
             VLK  F  +VFV NAL+  Y    +VD    +F    + D +++N + + Y    QF 
Sbjct: 265 GFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFK 324

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
           E+  LF +++             +LS      +L +G++ H             +ENAL 
Sbjct: 325 ESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALV 384

Query: 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318
           DMYA C     A +IF NI  K  +                                WTA
Sbjct: 385 DMYAKCNGDKEAQKIFDNIACKSTVP-------------------------------WTA 413

Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
           MI  Y++  +  E + +F +M+ + +  D+ T  SIL ACANL ++ LG  + + + ++ 
Sbjct: 414 MISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSG 473

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
             ++++ G+AL+D Y KCG +  A + F EM  ++  +W A+I   A NG+ D +L+ F 
Sbjct: 474 FMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQ 533

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           QM+++   PD V+++ VLSAC+H G V+E   +F  MT  + + P   HY  MVD+L R 
Sbjct: 534 QMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRN 593

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL-DPDNEAVYVLL 557
           G  +EA +++  MP +P+ I+W ++L +CR+H++ E+A+ AA ++  + D  + A Y+ +
Sbjct: 594 GRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINM 653

Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
            NIYA   +WDN  ++++ + DRG++K P  S +E+    H F A DKSHP+ K+I  K+
Sbjct: 654 SNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKI 713

Query: 618 DEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNL 677
           + ++ +++  GY PD +    DV E  K  ++  HSE+ A+AF L+++  G  I ++KNL
Sbjct: 714 NALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNL 773

Query: 678 RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           R C DCH   K++S + +RE+IVRD +RFHHFK G CSC DYW
Sbjct: 774 RACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 205/460 (44%), Gaps = 59/460 (12%)

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130
           V R  P P   L +  +     ID+H         ++K+   P+     F +  F     
Sbjct: 13  VLRNSPAPKPSLNSNHL-----IDAH---------IVKTGFNPNTCRSNFQVNNF----- 53

Query: 131 VEFGKELHCHVLKFGFDS----SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
           +E G  +H H +   FD     +    N +IS +   G++  AR +FD   +   V+W  
Sbjct: 54  LERGDLVHAHQV---FDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTI 110

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246
           +  GY +  Q  E  +L+ +M R G+ P  VT+V +LS   +L+  +V  + H +V +  
Sbjct: 111 LIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLG 170

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306
              NL++ N+L D Y     +  A ++F ++ NKD +++ +++TGY N G  +       
Sbjct: 171 YEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNE------- 223

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
                                   EA+ LF E+  S I+P +FT  ++L+A   L   + 
Sbjct: 224 ------------------------EAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKF 259

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+ V  ++ K     ++FVGNAL+D Y K   V++  ++F EM   D  ++  +I   A 
Sbjct: 260 GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAW 319

Query: 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
           NG   +S D+F ++        +  +  +LS  T +  +  GR+      I  G      
Sbjct: 320 NGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQ-AITVGANFESR 378

Query: 487 HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGA 526
               +VD+  +     EA ++  N+  K +++ W A++ A
Sbjct: 379 VENALVDMYAKCNGDKEAQKIFDNIACK-STVPWTAMISA 417


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/720 (34%), Positives = 387/720 (53%), Gaps = 42/720 (5%)

Query: 9   PPSTLTQET-PLISPIETCESMHQLKQ---IHSQTIKLGLLTNPT-VQNKLVTFCCSEKG 63
           PP+     T  L S +++C     L++   +H++ +  G     T + N L+T   S   
Sbjct: 162 PPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMY-SHCA 220

Query: 64  DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
           D+  A ++F  +PR +   W T++ G S+   H + +  +  M ++ V P  +      +
Sbjct: 221 DLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAAR 280

Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
                 A    +         GFD+ +FV + L   Y  CG +  A  +FD   + D V 
Sbjct: 281 AAAALGAPLRARSCTASA-SVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVA 339

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKRAHRYV 242
           W AM  GY +    +     F +M+R+G++     +   VLSA   LKD  + K  H  V
Sbjct: 340 WTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCV 399

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +      + + NAL DMYA               K+ DV S + ++   I+ G  ++  
Sbjct: 400 TKAGFELEVAVRNALIDMYA---------------KSMDVESASRVLK--IDPGGWNV-- 440

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
                      V  T+MIDGY+  +   EAL ++ E++   + P+EFT  S++  CA   
Sbjct: 441 -----------VSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQA 489

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
            LE G  +   + K  +  D FVG+ L+DMY KCG +  + ++F E+  +    W A+I 
Sbjct: 490 LLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVIN 549

Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
             A +GHG +++  F +M+ + I P+ + +V +L+AC+H G+VDEG +YF  M   HGIE
Sbjct: 550 VFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIE 609

Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
           P E HY C++D  GRAG L+EA + I  MP+KPN+  W +LLGACR+    E+ E+AA+ 
Sbjct: 610 PKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQN 669

Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVA 602
           +++L+P N  ++V L  IYA+  +W++ + +R+++ D  IKK PG S ++ N   H F +
Sbjct: 670 LMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGS 729

Query: 603 GDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED--KERAVYQHSEKLAMAF 660
            D SHPQ K+IY KL+E+T+ +K  GY+PD S  FL    ED  KER +  HSE++A+AF
Sbjct: 730 EDWSHPQQKDIYEKLEELTTRIKEEGYIPDTS--FLPCNLEDIAKERILRYHSERIAVAF 787

Query: 661 GLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            LIS      I + KNLR+C+DCH   K +  V  R++IVRD +RFHHF +G CSC DYW
Sbjct: 788 ALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 847



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 24/330 (7%)

Query: 215 TSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
           T+V +  +L +C +  DL  G+  H R V       +  L N L  MY+ C ++  AL +
Sbjct: 19  TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 78

Query: 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI-----------DG 322
           F  +  ++ +SWT +V+G +++  +            R  V  T +I             
Sbjct: 79  FAAMPRRNAVSWTTLVSG-LSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKH 137

Query: 323 YLRVNRFREALTLFREMQTSNI-RPDE------FTIVSILTACANLGALELGEWVKT-YI 374
            L  +      TL  +     + RP          + S+L +C   G L  G  +    +
Sbjct: 138 TLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLV 197

Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
                    F+ N LI MY  C D+  A R+F  M R++  +WT ++ GL+ N     +L
Sbjct: 198 LSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADAL 257

Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
             F+ M RA + P          A    G     R   A  ++  G +        + D+
Sbjct: 258 AAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASV--GFDTELFVASNLADM 315

Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
             + G L+EA  V   MP K +++ W A++
Sbjct: 316 YSKCGLLSEACRVFDQMPQK-DAVAWTAMI 344



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 83/221 (37%), Gaps = 50/221 (22%)

Query: 121 LLKGFTRDIAVEFGKELHCH-VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
           LL+   R   +  G+ LH   VL     +S F+ N LI+ Y  C ++  A  +F    + 
Sbjct: 26  LLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRR 85

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP------------------------- 214
           + V+W  + SG  +     +    F  M R GV P                         
Sbjct: 86  NAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAASHCH 145

Query: 215 -----------------------TSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPN 250
                                  T+V +  +L +C +  DL  G+  H R V       +
Sbjct: 146 SGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAAS 205

Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTG 291
             L N L  MY+ C ++  AL +F  +  ++ +SWT +V+G
Sbjct: 206 TFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSG 246


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/662 (35%), Positives = 360/662 (54%), Gaps = 70/662 (10%)

Query: 59  CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
           C + G++  A ++F ++P  +V  W TM+ GY +    +    ++LDM   DV       
Sbjct: 84  CLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAA----- 138

Query: 119 PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
                                              NA++  Y   G V+    +F+    
Sbjct: 139 ----------------------------------WNAMVHGYFENGRVEEGVRLFEEMPV 164

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            DV++W +M  G     + +E   +F +M R GV PT  T   VLSACA   + ++G + 
Sbjct: 165 RDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQV 224

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H +V +     +  +  +L   YA C ++  A +IF     K+V+ WTA++T Y+     
Sbjct: 225 HGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYV----- 279

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                            W          N+ ++AL +F +M      P++ T    L AC
Sbjct: 280 -----------------WN---------NKHQDALRVFGDMTKMGALPNQSTFSITLKAC 313

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
             L AL+ G+ + T   K  ++ D+FVGN+L+ MY +CG+V  A  VFR +  KD  +W 
Sbjct: 314 CGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWN 373

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
           ++IVG A +G G  +L  F+QM+R  + P+E+T+ G+LSAC+ +GM+ +GR +F  ++  
Sbjct: 374 SIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRY 433

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
                   HY CMVD+LGR G L+EA E+++ MP+K NS++W ALL ACRVH + E+AE 
Sbjct: 434 KSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAER 493

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
           AAK IL+L+P+  + YVLL NIYA+  RW +   +R  +   G+ K PG S + + G  H
Sbjct: 494 AAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKH 553

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAM 658
           EF++ D+SHP ++ IY KLD +   LK  GY+PD      DV +E KE  +  HSE+LA+
Sbjct: 554 EFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAI 613

Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
           AFGL+S+  G TI ++KNLR+C DCH + KL+S +  R+++VRD  RFHHFK+G CSC D
Sbjct: 614 AFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSD 673

Query: 719 YW 720
           YW
Sbjct: 674 YW 675



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 189/403 (46%), Gaps = 16/403 (3%)

Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
           +D AR IFD     ++  +  M +GY R  +  +  KLF  M  + V+  +  I      
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMI----KG 83

Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
           C    +L +  R    + E     N+I    + + Y   G +  A  +F ++  KDV +W
Sbjct: 84  CLDCGNLGMATRLFDEMPE----KNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAW 139

Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
            A+V GY   G+V+   + F++MP RD + WT+MI G     +  EAL +F++M  S + 
Sbjct: 140 NAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVE 199

Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
           P   T   +L+ACAN     LG  V  ++ K       F+  +LI  Y  C  +E A ++
Sbjct: 200 PTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKI 259

Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
           F E L K+   WTA++     N     +L +F  M +   +P++ T+   L AC     +
Sbjct: 260 FNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEAL 319

Query: 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525
           D+G+E    M I+ G+E +      +V +    G++N A+ V +N+  K + + W +++ 
Sbjct: 320 DKGKE-IHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEK-DIVSWNSIIV 377

Query: 526 ACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNR 566
               H     A +   Q++   +DP+     +    + +AC+R
Sbjct: 378 GSAQHGFGLWALIFFNQMIRRGVDPNE----ITFTGLLSACSR 416



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 129/263 (49%), Gaps = 9/263 (3%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           Q+H   +KLG   +  +   L+TF  +    +++A K+F +    +V  W  ++  Y   
Sbjct: 223 QVHGHVVKLGCFFHEFISVSLITF-YANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWN 281

Query: 94  DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQ 153
           + H++ + ++ DM K    P+  TF   LK      A++ GKE+H   +K G ++ VFV 
Sbjct: 282 NKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVG 341

Query: 154 NALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL 213
           N+L+  Y  CG V+ A  +F    + D+V+WN++  G  +          F +M R+GV 
Sbjct: 342 NSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVD 401

Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN---ALTDMYAACGEMGFA 270
           P  +T   +LSAC++   L  G+    Y+   K   N++       + D+   CG++  A
Sbjct: 402 PNEITFTGLLSACSRSGMLLKGRCFFEYISRYK--SNVLRPQHYACMVDILGRCGKLDEA 459

Query: 271 LEI--FGNIKNKDVISWTAIVTG 291
            E+  +  +K   +I W A+++ 
Sbjct: 460 EELVRYMPVKANSMI-WLALLSA 481



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 150/333 (45%), Gaps = 42/333 (12%)

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
           +S+T  +  ++   ++D AR  FD++P  +  L+T MI GY R +R  +AL LF  M   
Sbjct: 13  LSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVR 72

Query: 343 NIRPDEFTIVSILTACANLGAL-----ELGE-----W---VKTYIDKNKVK--------- 380
           ++      I   L  C NLG       E+ E     W   V  Y+   +V+         
Sbjct: 73  DVVSWNSMIKGCLD-CGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDM 131

Query: 381 --NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
              D+   NA++  Y + G VE+  R+F EM  +D  +WT+MI GL +NG  +++L +F 
Sbjct: 132 HVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFK 191

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +MLR+ + P   T+  VLSAC +    + G +    + ++ G   +E     ++      
Sbjct: 192 KMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHV-VKLGCFFHEFISVSLITFYANC 250

Query: 499 GHLNEALEVIKNMPMKPNSIVWGALLGAC---RVHRDA-----EMAEMAAKQILELDPDN 550
             +  A ++  N  +  N + W ALL A      H+DA     +M +M A         N
Sbjct: 251 MKIEHAHKIF-NETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGA-------LPN 302

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583
           ++ + +           D  +E+  M +  G++
Sbjct: 303 QSTFSITLKACCGLEALDKGKEIHTMAIKLGLE 335



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 39/255 (15%)

Query: 14  TQETPLISPIETC--ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKV 71
            Q T  I+    C  E++ + K+IH+  IKLGL T+  V N LV    +E G++  A  V
Sbjct: 302 NQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVM-YTECGNVNSAVAV 360

Query: 72  FRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV 131
           FR I    +  WN++I G ++       ++ +  M++  V P+  TF  LL   +R   +
Sbjct: 361 FRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGML 420

Query: 132 EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGY 191
             G+    ++       S +  N L   +  C                       M    
Sbjct: 421 LKGRCFFEYI-------SRYKSNVLRPQHYAC-----------------------MVDIL 450

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            R  + DE  +L   M  K     S+  + +LSAC    +L+V +RA +++ + +  PN 
Sbjct: 451 GRCGKLDEAEELVRYMPVKA---NSMIWLALLSACRVHSNLEVAERAAKHILDLE--PNC 505

Query: 252 ILENA-LTDMYAACG 265
                 L+++YA+ G
Sbjct: 506 SSAYVLLSNIYASAG 520


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/590 (38%), Positives = 339/590 (57%), Gaps = 36/590 (6%)

Query: 135 KELHCHVLKFG-FDSSVF-VQNALISTYCLC-GEVDMARGIFDVSYKDDVVTWNAMFSGY 191
           K+LH H+   G F   +   ++ L+  Y L  G +  A   F          WNA+  G+
Sbjct: 21  KQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIRGF 80

Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
            +          +  M  K     ++T   VL ACA++       + H ++     + + 
Sbjct: 81  IQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADA 140

Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
           +L   L D+YA  GE                               +D A + FD+M +R
Sbjct: 141 LLGTTLLDVYAKVGE-------------------------------IDSAEKVFDEMVKR 169

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           D   W A+I G+ + ++  EAL+LF+ M+    +P+E +++  L+ACA LG  + GE + 
Sbjct: 170 DIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIH 229

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGHG 430
            YI   +   +  V N +IDMY KCG V+KA  VF  M  RKD  TW  MI+  A++G G
Sbjct: 230 GYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEG 289

Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
            K+L++F +M ++ + PD+V+Y+ VL AC H G+V+EG   F  M    G++PN  HYG 
Sbjct: 290 CKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSME-NCGVKPNVKHYGS 348

Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
           +VDLLGRAG L+EA +++ +MP  P+ ++W  LLGA R HR+ E+AE  +++++E+  ++
Sbjct: 349 VVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNH 408

Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
              +VLL N+YAA  RW +   +R+ + +R +KK PG S IE NGV+H+F   DKSH   
Sbjct: 409 CGDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESW 468

Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVT 670
           +EIY KLDE+   +K  GY+ + S V  D+GEEDKE  +  HSEKLA+AFGLIS+  G  
Sbjct: 469 REIYAKLDEIRFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTP 528

Query: 671 IRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           I+++KNLR+C DCH + KL+S +YDRE+IVRD+ RFH FK G CSC+DYW
Sbjct: 529 IQVIKNLRICGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 180/388 (46%), Gaps = 34/388 (8%)

Query: 25  TCESMHQLKQIHSQTIKLGLLTNPT--VQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           T  S+   KQ+H+     G    P    ++KL+       G++ +A   F +I  PS   
Sbjct: 13  TTLSLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTND 72

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WN +I+G+ +  +  N    Y  M+    + D  T  F+LK   R +A     ++H H++
Sbjct: 73  WNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIV 132

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           + GF +   +   L+  Y   GE+D A  +FD   K D+ +WNA+ SG+ +  +  E   
Sbjct: 133 RKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALS 192

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           LF  ME  G  P  ++++  LSACA+L D   G++ H Y+K  +   N  + N + DMYA
Sbjct: 193 LFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYA 252

Query: 263 ACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
            CG +  A  +F ++   KD+++W  ++  +   G+                        
Sbjct: 253 KCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGC---------------------- 290

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
                    +AL LF +M  S + PD+ + +++L AC + G +E G  +   ++   VK 
Sbjct: 291 ---------KALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKP 341

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREM 409
           ++    +++D+  + G + +A  +   M
Sbjct: 342 NVKHYGSVVDLLGRAGRLHEAYDIVNSM 369


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/690 (34%), Positives = 374/690 (54%), Gaps = 34/690 (4%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYS- 91
           K +H   +KL L     V N L+    S+ G +  +  +F+     +V  WNTM+ G+S 
Sbjct: 296 KGVHGWAVKLSLDKELVVNNALMDMY-SKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSA 354

Query: 92  RIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
             D H    L+   +  S DV+ D  T    +     +  +   KELHC+ LK  F    
Sbjct: 355 EGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDE 414

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
            + NA +++Y  CG +  A+ +F       + +WNA+  GY +      +     +M+  
Sbjct: 415 LLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNS 474

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFA 270
           G+LP + T+  +LSAC+KLK L +GK  H                            GF 
Sbjct: 475 GLLPDNFTVCSLLSACSKLKSLRLGKEVH----------------------------GF- 505

Query: 271 LEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFR 330
             I  N   +D+  + ++++ YI+ G++   +  FD M +   V W  +I G+L+     
Sbjct: 506 --IIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPE 563

Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
            AL LFR+M    I+P   +++++  AC+ L +L LG     Y  K+ ++++ F+  ++I
Sbjct: 564 RALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSII 623

Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
           DMY K G + ++ +VF  +  K   +W AMI+G  ++G   +++ +F +M R    PD++
Sbjct: 624 DMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDL 683

Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
           T++GVL+AC H+G++ EG  Y   M    G++PN  HY C++D+LGRAG L+ AL V   
Sbjct: 684 TFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAE 743

Query: 511 MPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570
           M  +P+  +W +LL  CR+H++ EM E  A ++  L+P+    YVLL N+YA   +WD+ 
Sbjct: 744 MSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDV 803

Query: 571 RELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630
           R++RQ + +  ++K  GCS IE+NG V  FV G++     +EI      +   +  +GY 
Sbjct: 804 RQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYR 863

Query: 631 PDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLV 690
           PD S V  D+ EE+K   +  HSEKLA+ +GLI +  G T+R+ KNLR+CVDCH  AKL+
Sbjct: 864 PDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLI 923

Query: 691 SMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           S V +RE++VRD  RFHHF  G CSC DYW
Sbjct: 924 SKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/557 (25%), Positives = 255/557 (45%), Gaps = 58/557 (10%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           +H   +K GL+ +  V N LV+F  +  G +  A K+F  +P  ++  WN+MI+ +S  D
Sbjct: 209 VHGLVVKTGLVEDLFVGNALVSFYGTH-GFVSDALKLFDIMPERNLVSWNSMIRVFS--D 265

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
           +  +G  +          PD  T   +L    R+  +  GK +H   +K   D  + V N
Sbjct: 266 NGDDGAFM----------PDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNN 315

Query: 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM--ERKGV 212
           AL+  Y   G +  ++ IF ++   +VV+WN M  G+        T  L  +M    + V
Sbjct: 316 ALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDV 375

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
               VTI+  +  C     L   K  H Y  + + V + +L NA    YA CG + +A  
Sbjct: 376 KADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQR 435

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F  I++K + SW A++ GY       ++                  +D +L        
Sbjct: 436 VFHGIRSKTLNSWNALIGGYAQSSDPRLS------------------LDAHL-------- 469

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392
                +M+ S + PD FT+ S+L+AC+ L +L LG+ V  +I +N ++ D+FV  +++ +
Sbjct: 470 -----QMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSL 524

Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
           Y  CG++   Q +F  M      +W  +I G   NG  +++L +F QM+   I P  ++ 
Sbjct: 525 YIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISM 584

Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
           + V  AC+    +  GRE  A   ++H +E N      ++D+  + G + ++ +V   + 
Sbjct: 585 MTVFGACSLLPSLRLGREAHA-YALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLK 643

Query: 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL--DPDNEAVYVLLCNIYAACNR---- 566
            K ++  W A++    +H  A+ A    +++     +PD+    +    +  ACN     
Sbjct: 644 EK-SAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDD----LTFLGVLTACNHSGLL 698

Query: 567 WDNFRELRQMILDRGIK 583
            +  R L QM    G+K
Sbjct: 699 HEGLRYLDQMKSSFGLK 715



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 201/460 (43%), Gaps = 59/460 (12%)

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFG--FDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
            LL+   +   +E G+++H H++       S   +   +I+ Y +CG  D +R  FD   
Sbjct: 89  LLLQASGKRKDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALR 147

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
             ++  WNA+ S Y R + + E  ++F +M  +  +LP + T   V+ ACA + D+ +G 
Sbjct: 148 SKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGL 207

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
             H  V +  +V +L + NAL   Y   G  GF                           
Sbjct: 208 AVHGLVVKTGLVEDLFVGNALVSFY---GTHGF--------------------------- 237

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
            V  A + FD MPER+ V W +MI    RV  F +              PD  T+V++L 
Sbjct: 238 -VSDALKLFDIMPERNLVSWNSMI----RV--FSD------NGDDGAFMPDVATVVTVLP 284

Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
            CA    + +G+ V  +  K  +  ++ V NAL+DMY K G +  +Q +F+    K+  +
Sbjct: 285 VCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVS 344

Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRAS--IIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
           W  M+ G +  G    + D+  QML  S  +  DEVT +  +  C    ++   +E    
Sbjct: 345 WNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHC- 403

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRVHRDA 533
            +++     +E      V    + G L+ A  V   +  K  NS  W AL+G      D 
Sbjct: 404 YSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNS--WNALIGGYAQSSDP 461

Query: 534 EMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNRWDNFR 571
            ++  A  Q+    L PDN  V    C++ +AC++  + R
Sbjct: 462 RLSLDAHLQMKNSGLLPDNFTV----CSLLSACSKLKSLR 497


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/593 (36%), Positives = 339/593 (57%), Gaps = 33/593 (5%)

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A+  G+ +H H++K  +  + +++  L+  Y  C  ++ AR + D   + +VV+W AM S
Sbjct: 67  ALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMIS 126

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
            Y +     E   +F EM R    P   T   VL++C +   L +GK+ H  + +     
Sbjct: 127 RYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDS 186

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           ++ + ++L DMYA  G                               Q+  AR+ F+ +P
Sbjct: 187 HIFVGSSLLDMYAKAG-------------------------------QIKEAREIFECLP 215

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           ERD V  TA+I GY ++    EAL +F  + +  + P+  T  S+LTA + L  L+ G+ 
Sbjct: 216 ERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQ 275

Query: 370 VKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
              ++ + ++     + N+LIDMY KCG++  A+R+F  M  +   +W AM+VG + +G 
Sbjct: 276 AHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGL 335

Query: 430 GDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI-QHGIEPNEAH 487
           G + L++F  M     + PD VT + VLS C+H  M D G   F  M   ++G +P   H
Sbjct: 336 GREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEH 395

Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
           YGC+VD+LGRAG ++EA E IK MP KP + V G+LLGACRVH   ++ E   ++++E++
Sbjct: 396 YGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIE 455

Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
           P+N   YV+L N+YA+  RW +   +R M++ + + K PG S I+    +H F A D++H
Sbjct: 456 PENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTH 515

Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
           P+ +E+  K+ E++  +K  GY+PD+S V  DV EE KE+ +  HSEKLA+ FGLI++G 
Sbjct: 516 PRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGE 575

Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           G+ IR+ KNLR+CVDCH  AK+ S V++REV +RDK RFH    G CSC DYW
Sbjct: 576 GIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 171/330 (51%), Gaps = 35/330 (10%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD-MKYACKVFRKIPRPSVCLWNTMIKGYS 91
           +++H+  IK   L    ++ +L+ F    K D ++ A KV  ++P  +V  W  MI  YS
Sbjct: 72  QRVHAHMIKTRYLPATYLRTRLLIF--YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYS 129

Query: 92  RIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF 151
           +       + ++ +M++SD +P+ +TF  +L    R   +  GK++H  ++K+ +DS +F
Sbjct: 130 QTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIF 189

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V ++L+  Y   G++  AR IF+   + DVV+  A+ +GY ++   +E  ++F  +  +G
Sbjct: 190 VGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEG 249

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           + P  VT   +L+A + L  LD GK+AH +V   ++    +L+N+L DMY+ CG + +A 
Sbjct: 250 MSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAR 309

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            +F N+  +  ISW A++ GY   G                                 RE
Sbjct: 310 RLFDNMPERTAISWNAMLVGYSKHGL-------------------------------GRE 338

Query: 332 ALTLFREMQ-TSNIRPDEFTIVSILTACAN 360
            L LFR M+    ++PD  T++++L+ C++
Sbjct: 339 VLELFRLMRDEKRVKPDAVTLLAVLSGCSH 368



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 151/303 (49%), Gaps = 33/303 (10%)

Query: 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD 281
           +L+AC   + L  G+R H ++ + + +P   L   L   Y  C  +  A ++   +  K+
Sbjct: 58  LLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 117

Query: 282 VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           V+SWTA+++ Y   G                                  EALT+F EM  
Sbjct: 118 VVSWTAMISRYSQTGHSS-------------------------------EALTVFAEMMR 146

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
           S+ +P+EFT  ++LT+C     L LG+ +   I K    + IFVG++L+DMY K G +++
Sbjct: 147 SDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKE 206

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A+ +F  +  +D  + TA+I G A  G  +++L+MF ++    + P+ VTY  +L+A + 
Sbjct: 207 AREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSG 266

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
             ++D G++    + ++  +         ++D+  + G+L+ A  +  NMP +  +I W 
Sbjct: 267 LALLDHGKQAHCHV-LRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER-TAISWN 324

Query: 522 ALL 524
           A+L
Sbjct: 325 AML 327



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 3/227 (1%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+  T  T L S I     +   KQIH   +K    ++  V + L+    ++ G +K A 
Sbjct: 151 PNEFTFATVLTSCIRA-SGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMY-AKAGQIKEAR 208

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
           ++F  +P   V     +I GY+++   +  + ++  +    + P+  T+  LL   +   
Sbjct: 209 EIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLA 268

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            ++ GK+ HCHVL+        +QN+LI  Y  CG +  AR +FD   +   ++WNAM  
Sbjct: 269 LLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLV 328

Query: 190 GYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDLDVG 235
           GY +     E  +LF  M + K V P +VT++ VLS C+  +  D G
Sbjct: 329 GYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTG 375



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 125/277 (45%), Gaps = 6/277 (2%)

Query: 305 FDQMPERDYVLWTAMIDGYLRVN-RFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
           F   P  +YVL T +    L  N R +EAL    EM             ++L AC +  A
Sbjct: 12  FSSSPT-NYVLQTILPISQLCSNGRLQEALL---EMAMLGPEMGFHGYDALLNACLDKRA 67

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
           L  G+ V  ++ K +     ++   L+  Y KC  +E A++V  EM  K+  +WTAMI  
Sbjct: 68  LRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISR 127

Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
            +  GH  ++L +F++M+R+   P+E T+  VL++C     +  G++    + ++   + 
Sbjct: 128 YSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHG-LIVKWNYDS 186

Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
           +      ++D+  +AG + EA E+ + +P +        + G  ++  D E  EM  +  
Sbjct: 187 HIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLH 246

Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
            E    N   Y  L    +     D+ ++    +L R
Sbjct: 247 SEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRR 283


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 251/723 (34%), Positives = 399/723 (55%), Gaps = 46/723 (6%)

Query: 4   NSSISPPS-TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC--S 60
           NS I P S T++   P  + +   +   Q + +H  T+K G+ +   V N L+      S
Sbjct: 200 NSWIVPDSFTVSSVLPAFANLLVVK---QGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFS 256

Query: 61  EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
              D +   +VF ++       +NTMI GY +++  +  V ++L+ L    +PD  T   
Sbjct: 257 RPTDAR---RVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENL-DQFKPDILTVTS 312

Query: 121 LLK--GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
           +L   G  RD+++   K ++ ++L+ GF     V+N LI  Y  CG++  AR +F+    
Sbjct: 313 VLCACGHLRDLSL--AKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMEC 370

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
            D V+WN++ SGY +     E  KLF  M         +T ++++S   +L DL  GK  
Sbjct: 371 KDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGL 430

Query: 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQV 298
           H    +  I  +L + NAL DMYA CGE+G +L+IF                        
Sbjct: 431 HSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIF------------------------ 466

Query: 299 DMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC 358
                  + M   D V W  +I   +R   F   L +  +M+ + + PD  T +  L  C
Sbjct: 467 -------NSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMC 519

Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
           A+L A  LG+ +   + +   ++++ +GNALI+MY KCG +E + RVF  M R+D  TWT
Sbjct: 520 ASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWT 579

Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
            MI    + G G+K+L+ F  M ++ I+PD V ++ ++ AC+H+G+V++G   F  M   
Sbjct: 580 GMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTH 639

Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
           + I+P   HY C+VDLL R+  +++A E I+ MP++P++ +W ++L ACR   D E AE 
Sbjct: 640 YKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAER 699

Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
            +++I+EL+PD+    +L  N YAA  +WD    +R+ + D+ IKK PG S IE+   VH
Sbjct: 700 VSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVH 759

Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDV-GEEDKERAVYQHSEKLA 657
            F +GD S PQ++ I+  L+ + S +   GY+PD  EV  ++  EE+K R +  HSE+LA
Sbjct: 760 VFCSGDDSAPQSEAIHKSLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLA 819

Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
           +AFGL+++ PG  ++++KNLR+C DCH + KL+S +  RE++VRD  RFH FK G CSCK
Sbjct: 820 IAFGLLNTEPGTPLQVMKNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCK 879

Query: 718 DYW 720
           D W
Sbjct: 880 DRW 882



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/506 (25%), Positives = 243/506 (48%), Gaps = 36/506 (7%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI-PRPSVC 81
           + +  ++++L++IH+  I LGL  +     KL+      +     +  VFR++ P  +V 
Sbjct: 14  LSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPAS-SLSVFRRVSPAKNVY 72

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           +WN++I+ +S+       +  Y  + +S V PD YTFP ++K        E G  ++  +
Sbjct: 73  IWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQI 132

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           L+ GF+S ++V NAL+  Y   G +  AR +FD     D+V+WN++ SGY     ++E  
Sbjct: 133 LEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEAL 192

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261
           +++ E+    ++P S T+  VL A A L  +  G+  H +  +  +    ++ N L  MY
Sbjct: 193 EIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMY 252

Query: 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321
                   A  +F  +  +D +++                                 MI 
Sbjct: 253 LKFSRPTDARRVFDEMVVRDSVTY-------------------------------NTMIC 281

Query: 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381
           GYL++    E++ +F E      +PD  T+ S+L AC +L  L L +++  Y+ +     
Sbjct: 282 GYLKLEMVEESVKMFLE-NLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVL 340

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
           +  V N LID+Y KCGD+  A+ VF  M  KD  +W ++I G   +G   +++ +F  M+
Sbjct: 341 ESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMM 400

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
                 D +TY+ ++S  T    +  G+   ++  I+ GI  + +    ++D+  + G +
Sbjct: 401 IMEEQADHITYLMLISLSTRLADLKFGKGLHSN-GIKSGIYIDLSVSNALIDMYAKCGEV 459

Query: 502 NEALEVIKNMPMKPNSIVWGALLGAC 527
            ++L++  +M    +++ W  ++ AC
Sbjct: 460 GDSLKIFNSMG-TLDTVTWNTVISAC 484


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/701 (34%), Positives = 378/701 (53%), Gaps = 43/701 (6%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
           + + K +H+ ++  G+     V N LV+   +  GDM  A +VF          WN ++ 
Sbjct: 130 LREGKAVHALSVLEGIAGGVFVSNSLVSMY-ARCGDMGQARQVFDAADERDDVSWNALVS 188

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--GFTRDIAVEFGKELHCHVLKFGF 146
           GY R  +  + + ++  M +S +  +++    ++K    + D  ++    +H  V+K GF
Sbjct: 189 GYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGF 248

Query: 147 DSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQ------FDET 200
           DS VF+ +A++  Y   G +  A  +F      +VV +NAM +G  R +         E 
Sbjct: 249 DSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREA 308

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH-RYVKECKIVPNLILENALTD 259
             L+ E++ +G+ PT  T   V+ AC    D++ GK+ H + +K C              
Sbjct: 309 LSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHC-------------- 354

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
                             +  D I  +A++  Y+N G ++   + F  +P++D V WTAM
Sbjct: 355 -----------------FQGDDFIG-SALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAM 396

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
           I G ++   F  ALTLF E+  + ++PD FTI S++ ACA+L     GE ++ +  K+  
Sbjct: 397 ISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGF 456

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
                +GN+ I MY + GDV  A R F+EM   D  +W+A+I   A +G    +L  F++
Sbjct: 457 GRFTAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNE 516

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           M+ A ++P+E+T++GVL+AC+H G+VDEG +Y+  M  ++ + P   H  C+VDLLGRAG
Sbjct: 517 MVDAKVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAG 576

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559
            L +A   I++       ++W +LL +CR+HRD E  ++ A +I+EL P + A YV L N
Sbjct: 577 RLADAEAFIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYN 636

Query: 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDE 619
           IY          ++R ++ +RG+KK PG S IE+   VH FVAGDKSHP++  IY KL E
Sbjct: 637 IYLDAGELSLASKIRDVMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKLAE 696

Query: 620 MTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRM 679
           M S +  +    D S    D    +++  +  HSEKLA+A GLI       IR++KNLR+
Sbjct: 697 MLSKIDKL-TATDASSTKSDDTIRNEQSWMNWHSEKLAVALGLIHLPQSAPIRVMKNLRV 755

Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           C DCH   KL+S    RE+++RD  RFHHF+ GSCSC DYW
Sbjct: 756 CRDCHLTMKLISKSEKREIVLRDAIRFHHFRDGSCSCADYW 796



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/517 (26%), Positives = 244/517 (47%), Gaps = 36/517 (6%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           + +C +      +H+  ++     +  ++N L+   C   G   +A ++  ++PR +   
Sbjct: 24  LRSCSAPRHAAAVHAHIVRAHPSPSLFLRNTLLAAYCRLGG---HARRLLDEMPRTNAVS 80

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHV 141
           +N +I  YSR    +  +  +    +S  VR D +T+   L   +R   +  GK +H   
Sbjct: 81  FNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALS 140

Query: 142 LKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201
           +  G    VFV N+L+S Y  CG++  AR +FD + + D V+WNA+ SGY R    D+  
Sbjct: 141 VLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDML 200

Query: 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKD--LDVGKRAHRYVKECKIVPNLILENALTD 259
           ++F  M R G+   S  +  V+  CA   D  +D+    H  V +     ++ L +A+  
Sbjct: 201 RVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVG 260

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA  G +  A+ +F ++ + +V+ + A++ G                   RD       
Sbjct: 261 MYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLC-----------------RD------- 296

Query: 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379
            +  +  +  REAL+L+ E+Q+  + P EFT  S++ AC   G +E G+ +   + K+  
Sbjct: 297 -EAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCF 355

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
           + D F+G+ALID+Y   G +E   R F  + ++D  TWTAMI G   N   +++L +F +
Sbjct: 356 QGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHE 415

Query: 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499
           +L A + PD  T   V++AC    +   G E       + G     A     + +  R+G
Sbjct: 416 LLGAGLKPDPFTISSVMNACASLAVARTG-EQIQCFATKSGFGRFTAMGNSCIHMYARSG 474

Query: 500 HLNEALEVIKNMPMKPNSIVWGALLGACRVH---RDA 533
            ++ A+   + M    + + W A++ +   H   RDA
Sbjct: 475 DVHAAVRRFQEME-SHDIVSWSAVISSHAQHGCARDA 510


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/689 (33%), Positives = 370/689 (53%), Gaps = 57/689 (8%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTF--CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +HS   KLG   N  V + L+     CS   D ++   VF  I R    +W  M+  YS 
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEH---VFNGIVRKDAVVWTAMVSCYSE 240

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE-LHCHVLKFGFDSSVF 151
            D  +N                     F        +A+   ++ +H   +K   D+   
Sbjct: 241 NDCPENA--------------------FRCAQSCSLLAISCARQGIHGCAIKTLNDTEPH 280

Query: 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
           V  AL+  Y  CG++  AR  F++   DDV+  + M S Y +  Q ++  +LF  + R  
Sbjct: 281 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 340

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           VLP   ++  VL AC  +  LD GK+ H +  +     +L + NAL D YA C +M  +L
Sbjct: 341 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 400

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
           +IF ++++ + +S                               W  ++ G+ +     E
Sbjct: 401 KIFSSLRDANEVS-------------------------------WNTIVVGFSQSGLGEE 429

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL++F EMQ + +   + T  S+L ACA+  ++     +   I+K+   ND  +GN+LID
Sbjct: 430 ALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLID 489

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
            Y KCG +  A +VF+ ++ +D  +W A+I G A++G    +L++F +M ++++  +++T
Sbjct: 490 TYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDIT 549

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           +V +LS C  TG+V+ G   F  M I HGI+P+  HY C+V LLGRAG LN+AL+ I ++
Sbjct: 550 FVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDI 609

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P  P+++VW ALL +C +H++  +   +A++ILE++P +E  YVLL N+YAA    D   
Sbjct: 610 PSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVA 669

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            LR+ + + G++K PG S +E+ G +H F  G   HP  + I   L+ +       GY+P
Sbjct: 670 LLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIP 729

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           DI+ V  DV +E K R ++ HSE+LA+A+GL+ + PG  IRI+KNLR C+DCH    ++S
Sbjct: 730 DINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVIS 789

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +  RE+IVRD  RFHHF+ G CSC DYW
Sbjct: 790 KIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 159/343 (46%), Gaps = 9/343 (2%)

Query: 11  STLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
           S L  E  L S ++ C +M QL   KQIH+  IK+G  ++  V N L+ F  ++  DM  
Sbjct: 340 SVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDF-YAKCNDMDS 398

Query: 68  ACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127
           + K+F  +   +   WNT++ G+S+    +  + ++ +M  + +     T+  +L+    
Sbjct: 399 SLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 458

Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
             ++    ++HC + K  F++   + N+LI TY  CG +  A  +F    + D+++WNA+
Sbjct: 459 TASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAI 518

Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECK 246
            SGY    Q  +  +LF  M +  V    +T V +LS C     ++ G      ++ +  
Sbjct: 519 ISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHG 578

Query: 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYF 305
           I P++     +  +    G +  AL+  G+I +    + W A+++  I    V + R   
Sbjct: 579 IKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSA 638

Query: 306 DQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           +++ E   +D   +  + + Y       +   L + M+   +R
Sbjct: 639 EKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVR 681



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 175/426 (41%), Gaps = 54/426 (12%)

Query: 101 LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS--SVFVQNALIS 158
           L  L +L S    D++     L+G         G+ +H HV++ G      +F  N L++
Sbjct: 45  LTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLN 104

Query: 159 TYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
            Y   G +  AR +FD   + ++V++  +   + +   F+    LF  +  +G       
Sbjct: 105 MYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFV 164

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           +  +L     +    +    H    +     N  + + L D Y+ C  +  A  +F  I 
Sbjct: 165 LTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIV 224

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
            KD                                V+WTAM+  Y   +    A   FR 
Sbjct: 225 RKDA-------------------------------VVWTAMVSCYSENDCPENA---FRC 250

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
            Q+ ++         +  +CA  G    G  +KT  D      +  VG AL+DMY KCGD
Sbjct: 251 AQSCSL---------LAISCARQGIH--GCAIKTLND-----TEPHVGGALLDMYAKCGD 294

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           ++ A+  F  +   D    + MI   A +   +++ ++F +++R+S++P+E +   VL A
Sbjct: 295 IKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA 354

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
           CT+   +D G++   +  I+ G E +      ++D   +   ++ +L++  ++    N +
Sbjct: 355 CTNMVQLDFGKQ-IHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL-RDANEV 412

Query: 519 VWGALL 524
            W  ++
Sbjct: 413 SWNTIV 418


>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Glycine max]
          Length = 569

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/509 (41%), Positives = 309/509 (60%), Gaps = 5/509 (0%)

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           +LP    +  VL  C    DL    + H  V          L  +L   YA C     AL
Sbjct: 66  LLPDPTVLHRVLERCRVSTDLKTATKTHARVVVLGFATYPSLVASLISTYAQCHRPHIAL 125

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            +F  I   D+ S   ++   +  GQ D+A++ F +M  RD V W +MI GY+R  RF +
Sbjct: 126 HVFSRIL--DLFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFD 183

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           AL++FR M ++ + PD FT  S++TACA LGAL   +WV   + + +V+ +  +  ALID
Sbjct: 184 ALSIFRRMLSAKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAALID 243

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           MY KCG ++ +++VF E+ R     W AMI GLAI+G    +  +FS+M    ++PD +T
Sbjct: 244 MYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPDSIT 303

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           ++G+L+AC+H G+V+EGR+YF  M  +  I+P   HYG MVDLLGRAG + EA  VIK M
Sbjct: 304 FIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEM 363

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
            M+P+ ++W ALL ACR+HR  E+ E+A   I  L+  +   +VLL N+Y + N WD   
Sbjct: 364 RMEPDIVIWRALLSACRIHRKKELGEVAIANISRLESGD---FVLLSNMYCSLNNWDGAE 420

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            +R+M+  RG++K+ G S +E+   +H+F A  +SHP+ K IY  L+ +    K  G+ P
Sbjct: 421 RVRRMMKTRGVRKSRGKSWVELGDGIHQFNAAYQSHPEMKSIYRVLEGLIQRAKLEGFTP 480

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
               V +DV EE+KE  +  HSEKLAMA+ ++ + PG  IRI KNLR+C+DCH   K+VS
Sbjct: 481 LTDLVLMDVSEEEKEENLMFHSEKLAMAYAVLKTSPGTKIRISKNLRICLDCHNWIKIVS 540

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            + +R++IVRD+ RFH F+ G CSCKDYW
Sbjct: 541 KILNRKIIVRDRIRFHQFEGGVCSCKDYW 569



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 138/313 (44%), Gaps = 35/313 (11%)

Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
           T+P L+       A      +  HV     D  +F  N +I +    G+ D+A+ +F   
Sbjct: 103 TYPSLVASLISTYAQCHRPHIALHVFSRILD--LFSMNLVIESLVKGGQCDIAKKVFGKM 160

Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
              DVVTWN+M  GY R  +F +   +F  M    V P   T   V++ACA+L  L   K
Sbjct: 161 SVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTACARLGALGNAK 220

Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
             H  + E ++  N IL  AL DMYA CG +  + ++F  +    V  W A+++G    G
Sbjct: 221 WVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHG 280

Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
                                AM           +A  +F  M+  ++ PD  T + ILT
Sbjct: 281 --------------------LAM-----------DATLVFSRMEMEHVLPDSITFIGILT 309

Query: 357 ACANLGALELG-EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDK 414
           AC++ G +E G ++     ++  ++  +     ++D+  + G +E+A  V +EM +  D 
Sbjct: 310 ACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEMRMEPDI 369

Query: 415 FTWTAMIVGLAIN 427
             W A++    I+
Sbjct: 370 VIWRALLSACRIH 382



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 153/334 (45%), Gaps = 19/334 (5%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           LIS    C   H    + S+ + L           LV     + G    A KVF K+   
Sbjct: 111 LISTYAQCHRPHIALHVFSRILDL-------FSMNLVIESLVKGGQCDIAKKVFGKMSVR 163

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
            V  WN+MI GY R     + + I+  ML + V PD +TF  ++    R  A+   K +H
Sbjct: 164 DVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTACARLGALGNAKWVH 223

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
             +++   + +  +  ALI  Y  CG +D++R +F+   +D V  WNAM SG        
Sbjct: 224 GLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAM 283

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK-ECKIVPNLILENAL 257
           +   +F  ME + VLP S+T + +L+AC+    ++ G++    ++    I P L     +
Sbjct: 284 DATLVFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTM 343

Query: 258 TDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTG-YINR----GQVDMARQYFDQMPER 311
            D+    G M  A  +   ++   D++ W A+++   I+R    G+V +A     ++   
Sbjct: 344 VDLLGRAGLMEEAYAVIKEMRMEPDIVIWRALLSACRIHRKKELGEVAIAN--ISRLESG 401

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
           D+VL + M   Y  +N +  A  + R M+T  +R
Sbjct: 402 DFVLLSNM---YCSLNNWDGAERVRRMMKTRGVR 432


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/445 (47%), Positives = 300/445 (67%), Gaps = 6/445 (1%)

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
           N DV+  T ++  Y   G +D+A++ FD+MP+ D   W A+I G+ + +R  +A+  F+ 
Sbjct: 135 NADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKR 194

Query: 339 MQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
           M+   N+RP+  T+   L AC+ LGAL+ GE V  YI + K+ +++ V N +IDMY KCG
Sbjct: 195 MKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCG 254

Query: 398 DVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
            ++KA  VF  M R DK   TW  MI+  A++G G K+LD+F ++ R+ + PD V+Y+ V
Sbjct: 255 SMDKAYWVFENM-RCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAV 313

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           L AC H G+V++G + F  MT Q G+EPN  HYG MVDLLGRAG L EA +++ ++P  P
Sbjct: 314 LCACNHAGLVEDGLKLFNSMT-QRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-P 371

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           N ++W  LLGACR + D EMAE+A+++++E+   +   +VLL N+YAA  RWD+   +R 
Sbjct: 372 NMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYAARQRWDDVGRVRD 431

Query: 576 MILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
            +  R +KKTPG S IE+ G +++FV GD+SH   +EIY KLDE+   +K  GY  D S 
Sbjct: 432 AMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSN 491

Query: 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
           V  D+G+EDKE A+  HSEKLA+AFGL  +  G  I+++KNLR+C DCH + KL+S +Y 
Sbjct: 492 VLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYI 551

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           RE+IVRD+TRFH FK G CSCKDYW
Sbjct: 552 REIIVRDRTRFHRFKEGLCSCKDYW 576



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 198/404 (49%), Gaps = 36/404 (8%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVC 81
           ++ C S  Q+KQ+ +  I  G     + + KL+  C  S  GD+ YA  +FR IP PS  
Sbjct: 8   LQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPSTN 67

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDV--RPDNYTFPFLLKGFTRDIAVEFGKELHC 139
            WN +I+G +      N V  Y  M  S+   R D  T  F LK   R +A     +LH 
Sbjct: 68  DWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHS 127

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            +L+FGF++ V +Q  L+  Y   G++D+A+ +FD   + D+ +WNA+ +G+ +  +  +
Sbjct: 128 QLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPAD 187

Query: 200 TRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
               F  M+  G L P +VT+   L AC++L  L  G+  H+Y+ E K+  N+ + N + 
Sbjct: 188 AIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVI 247

Query: 259 DMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
           DMYA CG M  A  +F N++ +K +I+W  ++  +   G                     
Sbjct: 248 DMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHG--------------------- 286

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
              DG+       +AL LF ++  S + PD  + +++L AC + G +E G  +   + + 
Sbjct: 287 ---DGH-------KALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR 336

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            ++ +I    +++D+  + G +++A  +   +   +   W  ++
Sbjct: 337 GLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLL 380



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 141/283 (49%), Gaps = 3/283 (1%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           Q+HSQ ++ G   +  +Q  L+    ++ GD+  A K+F ++P+P +  WN +I G+++ 
Sbjct: 124 QLHSQLLRFGFNADVLLQTTLLD-AYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQG 182

Query: 94  DSHKNGVLIYLDM-LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               + ++ +  M +  ++RP+  T    L   ++  A++ G+ +H ++++   DS+V V
Sbjct: 183 SRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQV 242

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKD-DVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
            N +I  Y  CG +D A  +F+    D  ++TWN M   +       +   LF ++ R G
Sbjct: 243 CNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSG 302

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           + P +V+ + VL AC     ++ G +    + +  + PN+    ++ D+    G +  A 
Sbjct: 303 MSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAY 362

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
           +I  ++   +++ W  ++      G V+MA     ++ E  ++
Sbjct: 363 DIVSSLPFPNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFI 405


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/617 (35%), Positives = 354/617 (57%), Gaps = 40/617 (6%)

Query: 13  LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVF 72
           L  + PL+S ++  ++  Q+ QIH+Q I   L+++    ++L+    S+  ++ YA  VF
Sbjct: 8   LQLKNPLLSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVF 67

Query: 73  RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVE 132
            +I +P+  + NTM+K Y+   + +  +  Y +M +  +  DNYT+PF+LK       + 
Sbjct: 68  AQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLL 127

Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
            G  +    +K GF   VFV N LIS YC CGE   AR +FD   + D+V+WN+M  GY 
Sbjct: 128 EGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYV 187

Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
              + +  + +F EM  + V+  S+ I                                 
Sbjct: 188 WCGEMENAQNMFDEMPERDVVSWSIMI--------------------------------- 214

Query: 253 LENALTDMYAA-CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
                 D Y    GE+  A   F ++  +D++SW +++ GY   G++++AR+ FD+M ++
Sbjct: 215 ------DGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQK 268

Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
           + + W+ MIDGY +    +EAL LFR+M    I+PD  ++V  ++AC+ LGAL+ G W+ 
Sbjct: 269 NVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIH 328

Query: 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGD 431
            Y+ +N++  DI V  AL+DMY KCG  ++A+R+F  M  ++  +W  MIVGL +NG G 
Sbjct: 329 LYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGK 388

Query: 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491
           ++L+ F+QM    I  D++ ++GVL AC+H  +V EG   F  M   + +EP   HYGC+
Sbjct: 389 EALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCL 448

Query: 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551
           VDLLGRAG L++   +I++MPMKPN+ +WG+LL ACR+H++  +AE+  +++ EL  D+ 
Sbjct: 449 VDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDS 508

Query: 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTK 611
            VYVL+ NIYA    W+    +R+++ +R +KK  G S+IE++G V EFV+G+KSH   +
Sbjct: 509 GVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNVEEFVSGEKSHILRE 568

Query: 612 EIYLKLDEMTSDLKFVG 628
           EI L +  +     F G
Sbjct: 569 EIELVIWSLAKMAMFAG 585



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 149/346 (43%), Gaps = 27/346 (7%)

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWT--------AIVTGYINRGQVDM 300
           P L L+N L  +          L+I   +   ++IS T        ++V+  +N   V+ 
Sbjct: 6   PKLQLKNPLLSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLN---VNY 62

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           A   F Q+ + +  +   M+  Y   +    AL  + EM+   +  D +T   +L AC  
Sbjct: 63  AELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGA 122

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
           +  L  G  V+    K     D+FV N LI MYC+CG+   A+ VF     KD  +W +M
Sbjct: 123 MCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSM 182

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           + G    G  + + +MF +M    ++   +   G        G V+  R +F  M  +  
Sbjct: 183 LGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGY---GKKMGEVNRARVFFDSMPTRDL 239

Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
           +  N      M+D   + G +  A E+   M ++ N I W  ++     HRD++ A    
Sbjct: 240 VSWNS-----MIDGYAKVGEMEVAREIFDKM-LQKNVISWSIMIDGYAQHRDSKEALNLF 293

Query: 541 KQIL--ELDPDNEAVY--VLLCNIYAACN--RWDNFRELR-QMILD 579
           +Q+L   + PD  +V   V  C+   A +  RW +    R +M+LD
Sbjct: 294 RQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLD 339


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/564 (38%), Positives = 332/564 (58%), Gaps = 35/564 (6%)

Query: 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK-GVLPTSVT 218
           Y  CG     R IFD     D+V W AM + Y++ ++ +E   LF +M+++ G+L  S+ 
Sbjct: 2   YAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIA 61

Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK 278
           +V V SA  +L D+      H Y     ++  L + N++  M+  CG             
Sbjct: 62  VVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCG------------- 108

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
                               + AR  FD M ERD + W +M+ GY +  +  EAL LF E
Sbjct: 109 ------------------NTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDE 150

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M+ S+ +P   T + +++ACA LG   LG     +I  ++++ D  + NAL+DMY KCGD
Sbjct: 151 MRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGD 210

Query: 399 VEKAQRVFREM--LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456
           +EKA  +F  +    ++  +W  +I G  ++GHG ++L++FS+M    + P+  T+  +L
Sbjct: 211 LEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSIL 270

Query: 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN 516
           SAC+H G++DEGR+ FA+M  +  +   + H+ C+VD+LGRAG L EA ++IK MP  P+
Sbjct: 271 SACSHAGLIDEGRKCFAEMK-RLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPS 329

Query: 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576
             VWGALL AC++H + E+ + AA  +L+L+P++   YVL+ NIYAA N+W    +LRQ 
Sbjct: 330 DGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQD 389

Query: 577 ILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEV 636
           + ++G+KK    SMIE    +  F   D+ +P   E+Y K++ +  ++K  GY+PD+S  
Sbjct: 390 MKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYKKMESLAIEMKMAGYVPDLSCA 449

Query: 637 FLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDR 696
             DV EEDKER +  HSEKLA+AFG++   PG+ IR+ KNLR+C DCH   K +S +Y R
Sbjct: 450 LHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKNLRVCNDCHSAFKYISHIYQR 509

Query: 697 EVIVRDKTRFHHFKHGSCSCKDYW 720
           ++IVRD  RFHHF+ G+CSCKDYW
Sbjct: 510 KIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 183/392 (46%), Gaps = 37/392 (9%)

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRD 128
           K+F ++    +  W  MI  Y + +  +  ++++  M + + +  D+     +     + 
Sbjct: 13  KIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQL 72

Query: 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF 188
             V+    +H +  +      + V N++++ +  CG  + AR +FD+  + DV++WN+M 
Sbjct: 73  GDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSML 132

Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
           SGY +  Q  E   LF EM      PT VT ++++SACA L    +G++ H ++ + ++ 
Sbjct: 133 SGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRME 192

Query: 249 PNLILENALTDMYAACGEMGFALEIFGNI--KNKDVISWTAIVTGYINRGQVDMARQYFD 306
            +  L NAL DMYA CG++  A+++F  I    ++  SW  +++GY   G          
Sbjct: 193 IDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGH--------- 243

Query: 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366
                                  +EAL LF  MQ   + P+ FT  SIL+AC++ G ++ 
Sbjct: 244 ----------------------GKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDE 281

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-KDKFTWTAMIVGLA 425
           G      + +  V  +      ++DM  + G +++A  + +EM        W A+++   
Sbjct: 282 GRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACK 341

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
           I+G+ +      S +L+  + P+   Y  ++S
Sbjct: 342 IHGNMELGKTAASNLLQ--LEPNHTGYYVLMS 371



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 130/273 (47%), Gaps = 34/273 (12%)

Query: 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAM 319
           MYA CG      +IF  +  KD++ WTA++T Y              + PE         
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQA-----------EKPE--------- 40

Query: 320 IDGYLRVNRFREALTLFREMQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378
                      EAL LF++MQ    +  D   +VS+ +A   LG ++    V  Y  +  
Sbjct: 41  -----------EALILFKKMQQEEGLLADSIAVVSVASAVGQLGDVKNAHTVHGYAFRKS 89

Query: 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFS 438
           +  ++ VGN+++ M+ KCG+ EKA+ VF  M+ +D  +W +M+ G   NG   ++L +F 
Sbjct: 90  LIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFD 149

Query: 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498
           +M  +   P  VT + ++SAC + G    GR+ F D  +   +E +      ++D+  + 
Sbjct: 150 EMRDSDCQPTPVTALIMVSACAYLGFRHLGRK-FHDFIVDSRMEIDTNLSNALMDMYAKC 208

Query: 499 GHLNEALEVIKNM-PMKPNSIVWGALLGACRVH 530
           G L +A+++   + P + N+  W  L+    +H
Sbjct: 209 GDLEKAVDLFNGIPPTERNAGSWNVLISGYGMH 241



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 142/334 (42%), Gaps = 26/334 (7%)

Query: 35  IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94
           +H    +  L+    V N ++    ++ G+ + A  VF  +    V  WN+M+ GY++  
Sbjct: 81  VHGYAFRKSLIEELCVGNSILAMH-TKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNG 139

Query: 95  SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN 154
                +L++ +M  SD +P   T   ++           G++ H  ++    +    + N
Sbjct: 140 QATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSN 199

Query: 155 ALISTYCLCGEVDMARGIFD--VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
           AL+  Y  CG+++ A  +F+     + +  +WN + SGY       E  +LF  M+ +GV
Sbjct: 200 ALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGV 259

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC-----GEM 267
            P   T   +LSAC+    +D G++    +K   +         L D + AC     G  
Sbjct: 260 EPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVT--------LEDKHHACVVDMLGRA 311

Query: 268 GFALEIFGNIKN-----KDVISWTAIVTGYINRGQVDMARQYFD---QMPERDYVLWTAM 319
           G   E F  IK       D + W A++      G +++ +       Q+       +  M
Sbjct: 312 GLLQEAFDLIKEMPSPPSDGV-WGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLM 370

Query: 320 IDGYLRVNRFREALTLFREMQTSNI-RPDEFTIV 352
            + Y   N+++E   L ++M+   + +P  F+++
Sbjct: 371 SNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMI 404


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/685 (32%), Positives = 366/685 (53%), Gaps = 49/685 (7%)

Query: 45  LTNPT--VQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLI 102
           + NP   ++N ++   C + G +  A KVF ++   ++  WNT+I  Y+       G  +
Sbjct: 40  VKNPPEFLENSVLKMYC-KCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCM 98

Query: 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162
           + +ML+ + +P+  T+   L+       +E GK++H H ++ G  S+  V  A+ + Y  
Sbjct: 99  FSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVK 158

Query: 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV 222
           CG ++ A  +F+   + + V W  +  GY + ++  +   LF +M  +GV        +V
Sbjct: 159 CGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIV 218

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L ACA L++L+ G++ H ++ +  +   + +   L D Y  C  +               
Sbjct: 219 LKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNL--------------- 263

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 342
                           + A + F+ + E + V W+A+I GY ++  F EAL  F  ++T 
Sbjct: 264 ----------------ESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTR 307

Query: 343 NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA 402
           ++  + FT  SI  AC+ L     G        K+ +       +A+I MY +CG ++ A
Sbjct: 308 SVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYA 367

Query: 403 QRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462
            RVF  +   D   WTA+I G A  G+  ++L +F +M    + P+ VT++ VL+AC+H+
Sbjct: 368 TRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHS 427

Query: 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522
           G+V EGR+Y   M+  +G+     HY CMVD+  RAG L EALE+I++MP  P+++ W  
Sbjct: 428 GLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKC 487

Query: 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582
           LLG C  +R+ E+ E+AA+ + +LDP++ A Y+L+ N+YA+  +W     +R+M+ +R +
Sbjct: 488 LLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNL 547

Query: 583 KKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
           +K   CS I + G VH F+ GDK HPQT+EIY KL+ +   +        I E    + E
Sbjct: 548 RKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSV--------IKEETGLLTE 599

Query: 643 ED-------KERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
           ED       ++  +  HSE+LA+AFGLIS+     + + KNLR C DCH   K VS++  
Sbjct: 600 EDVSNSLPERKEQLLVHSERLALAFGLISTPSSAPVVVFKNLRACKDCHDFGKQVSLITG 659

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           RE++VRD  RFHHFK G CSC DYW
Sbjct: 660 REIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 192/393 (48%), Gaps = 34/393 (8%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQIHS  I+ GL +N +V N  ++    + G ++ A  VF K+   +   W  ++ GY++
Sbjct: 131 KQIHSHAIRSGLGSNASV-NTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQ 189

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
            +   + + ++  M+   V  D Y F  +LK       + FG+++H H++K G +S V V
Sbjct: 190 AERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSV 249

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
              L+  Y  C  ++ A   F+   + + V+W+A+ +GY ++ +F+E  K F  +  + V
Sbjct: 250 GTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSV 309

Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
              S T   +  AC+ L D + G +AH    +  +V     E+A+  MY+ CG + +A  
Sbjct: 310 DINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATR 369

Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
           +F +I + D ++WTAI+ GY  +G                                  EA
Sbjct: 370 VFESIDDPDAVAWTAIIAGYAYQGNAP-------------------------------EA 398

Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLG-ALELGEWVKTYIDKNKVKNDIFVGNALID 391
           L LFR MQ   +RP+  T +++LTAC++ G  +E  +++++      V   I   + ++D
Sbjct: 399 LKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVD 458

Query: 392 MYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVG 423
           +Y + G +++A  + R M    D  +W  ++ G
Sbjct: 459 IYSRAGFLQEALELIRSMPFSPDAMSWKCLLGG 491



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 145/324 (44%), Gaps = 34/324 (10%)

Query: 207 MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266
           ME  G+  +  +   +  AC K+K L  G+  H  ++     P   LEN++  MY  CG 
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 267 MGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326
           +                                 AR+ FD+M ER+ V W  +I  Y   
Sbjct: 61  LA-------------------------------DARKVFDEMRERNLVSWNTIISAYAEN 89

Query: 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386
             F +   +F  M     +P+  T +  L +  N   LE+G+ + ++  ++ + ++  V 
Sbjct: 90  GVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVN 149

Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
            A+ +MY KCG +E A+ VF +M  K+   WT ++VG         +L +F++M+   + 
Sbjct: 150 TAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVE 209

Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
            DE  +  VL AC     ++ GR+    + ++ G+E   +    +VD   +  +L  A +
Sbjct: 210 LDEYVFSIVLKACAGLEELNFGRQIHGHI-VKLGLESEVSVGTPLVDFYVKCSNLESATK 268

Query: 507 VIKNMPMKPNSIVWGALL-GACRV 529
             + +  +PN + W AL+ G C++
Sbjct: 269 AFEWIS-EPNDVSWSALITGYCQM 291



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 155/335 (46%), Gaps = 13/335 (3%)

Query: 23  IETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRKIPR 77
           ++ C  + +L   +QIH   +KLGL +  +V   LV F   CS   +++ A K F  I  
Sbjct: 219 LKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCS---NLESATKAFEWISE 275

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137
           P+   W+ +I GY ++   +  +  +  +    V  +++T+  + +  +       G + 
Sbjct: 276 PNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQA 335

Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
           H   +K    +    ++A+I+ Y  CG +D A  +F+     D V W A+ +GY      
Sbjct: 336 HADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNA 395

Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE-NA 256
            E  KLF  M+  GV P +VT + VL+AC+    +  G++    +     V   I   + 
Sbjct: 396 PEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDC 455

Query: 257 LTDMYAACGEMGFALEIFGNIK-NKDVISWTAIVTG---YINRGQVDMARQYFDQMPERD 312
           + D+Y+  G +  ALE+  ++  + D +SW  ++ G   Y N    ++A +   Q+   D
Sbjct: 456 MVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPED 515

Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
              +  M + Y    +++EA  + + M   N+R +
Sbjct: 516 TAGYILMFNLYASFGKWKEAANVRKMMAERNLRKE 550



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 114/246 (46%), Gaps = 3/246 (1%)

Query: 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398
           M+ + I     +   +  AC  + +L  G      + +       F+ N+++ MYCKCG 
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458
           +  A++VF EM  ++  +W  +I   A NG  DK   MFS ML     P+  TY+G L +
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120

Query: 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518
             +   ++ G++  +   I+ G+  N +    + ++  + G L  A  V + M  K N++
Sbjct: 121 LLNPSGLEIGKQIHSH-AIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEK-NAV 178

Query: 519 VW-GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577
            W G ++G  +  R  +   + AK + E    +E V+ ++    A     +  R++   I
Sbjct: 179 AWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHI 238

Query: 578 LDRGIK 583
           +  G++
Sbjct: 239 VKLGLE 244


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/692 (35%), Positives = 383/692 (55%), Gaps = 9/692 (1%)

Query: 34   QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
            Q+H   +K G+L +  V   LV F  S  G +  A K+F ++P  +V  W +++ GYS  
Sbjct: 396  QVHGFVVKTGILGDVYVGTALVHFYGS-IGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDS 454

Query: 94   DSHKNGVLIYLDMLKSDVRPDNYTFPFLLK--GFTRDIAVEFGKELHCHVLKFGFDSSVF 151
             +    + +Y  M +  V  +  TF  +    G   D  +  G ++  H++++GF+ SV 
Sbjct: 455  GNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVL--GYQVLGHIIQYGFEDSVS 512

Query: 152  VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
            V N+LIS +     V+ A  +FD   + D+++WNAM S Y       E+ + F  M    
Sbjct: 513  VANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLH 572

Query: 212  VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
                S T+  +LS C+ + +L  G+  H  V +  +  N+ + N L  +Y+  G    A 
Sbjct: 573  NETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAE 632

Query: 272  EIFGNIKNKDVISWTAIVTGYINRGQ-VDMARQYFD--QMPERDYVLWTAMIDGYLRVNR 328
             +F  +  +D+ISW +++  Y+  G+ +D  +   +  QM + D V W A+I G+     
Sbjct: 633  LVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEE 692

Query: 329  FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
              EA+  ++ ++   I  +  T+VS L A ANL  LE G+ +   + K   ++D+ V NA
Sbjct: 693  PNEAVKAYKLIREKGIPANYITMVS-LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNA 751

Query: 389  LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
             +DMY KCG++    ++  + + + + +W  +I   A +G   K+ + F +ML+    PD
Sbjct: 752  AMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPD 811

Query: 449  EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
             VT+V +LSAC H G+VDEG  Y+  MT + G+ P   H  C++DLLGR+G L+ A   I
Sbjct: 812  HVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFI 871

Query: 509  KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
            K MP+ PN + W +LL ACR+H + E+A   A+ +LELDP +++ YVL  N+ A   +W+
Sbjct: 872  KEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWE 931

Query: 569  NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
            +   LR+ +    IKK P CS +++   VH F  G+K HPQ   I  KL E+    K  G
Sbjct: 932  DVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAG 991

Query: 629  YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
            Y+PD S    D+ EE KE  ++ HSE+LA+AFGLI++    T+RI KNLR+C DCH + K
Sbjct: 992  YVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYK 1051

Query: 689  LVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
             VS +  R++++RD  RFHHF  G CSC DYW
Sbjct: 1052 FVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 148/553 (26%), Positives = 251/553 (45%), Gaps = 98/553 (17%)

Query: 31  QLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGY 90
           Q   IH+  I  G  ++  +  KL+ F   + GD+  A  VF  +P  SV  W  M+ GY
Sbjct: 48  QGHLIHTHLITNGFGSDLHLNTKLIIFYV-KVGDVIAARNVFDGMPERSVVSWTAMVSGY 106

Query: 91  SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSV 150
           S     +NG      +L SD+R                         HC          V
Sbjct: 107 S-----QNGRFEKAFVLFSDMR-------------------------HC---------GV 127

Query: 151 FVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK 210
              +AL+  +  CG+++ A  +F    + DVV+WNAM  GY      D++  +F  M R 
Sbjct: 128 KANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRG 187

Query: 211 GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-----KIVPNLILE----------- 254
           G++P   T+  VL A A+   L +  + H  + +       IV  L++            
Sbjct: 188 GLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSA 247

Query: 255 -------------------------------NALTDMYAACGEMGFALEIFGNIKNKDVI 283
                                          NAL DMYA  GE+  A   F  ++ K+VI
Sbjct: 248 KDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVI 307

Query: 284 SWTAIVTGYINRGQVDM--ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
           SWT++++GY   G   M  AR  FD+M  R+   W+ M+ GY+RV  + EA+ LF +M  
Sbjct: 308 SWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG 367

Query: 342 SNIRPDEFTIVSILTACANLGAL-ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVE 400
             + P+ F + S++TAC+  G + + G  V  ++ K  +  D++VG AL+  Y   G V 
Sbjct: 368 LGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVY 427

Query: 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
            AQ++F EM   +  +WT+++VG + +G+  + L+++ +M +  +  ++ T+  V S+C 
Sbjct: 428 NAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC- 486

Query: 461 HTGMVDE---GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
             G++++   G +    + IQ+G E + +    ++ +      + EA  V  +M  + + 
Sbjct: 487 --GLLEDQVLGYQVLGHI-IQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDI 542

Query: 518 IVWGALLGACRVH 530
           I W A++ A   H
Sbjct: 543 ISWNAMISAYAHH 555



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/539 (21%), Positives = 237/539 (43%), Gaps = 71/539 (13%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G M +A  VF ++   +   W+TM+ GY R+  ++  V ++  M    V P+ +    L+
Sbjct: 322 GHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLI 381

Query: 123 KGFTRD-IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
              +R     + G ++H  V+K G    V+V  AL+  Y   G V  A+ +F+     +V
Sbjct: 382 TACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNV 441

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           V+W ++  GY       E   ++  M ++GV     T   V S+C  L+D  +G +   +
Sbjct: 442 VSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGH 501

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
           + +     ++ + N+L  M+++   +  A  +F ++   D+ISW A+++ Y + G     
Sbjct: 502 IIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLC--- 558

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                       RE+L  F  M+  +   +  T+ S+L+ C+++
Sbjct: 559 ----------------------------RESLRCFHWMRHLHNETNSTTLSSLLSVCSSV 590

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK--------- 412
             L+ G  +   + K  + +++ + N L+ +Y + G  E A+ VF+ M  +         
Sbjct: 591 DNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMM 650

Query: 413 -------------------------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
                                    D+ TW A+I G A N   ++++  + +++R   IP
Sbjct: 651 ACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAY-KLIREKGIP 709

Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
                +  L+A  +  +++EG++    + I+ G E +       +D+ G+ G +++ L++
Sbjct: 710 ANYITMVSLAATANLAVLEEGQQLHG-LVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKM 768

Query: 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
           +   P+  + + W  L+ A   H   + A     ++L+L P  +  +V   ++ +ACN 
Sbjct: 769 LPQ-PINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPD--HVTFVSLLSACNH 824



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 193/443 (43%), Gaps = 72/443 (16%)

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
           G  +H H++  GF S + +   LI  Y   G+V  AR +FD   +  VV+W AM SGY +
Sbjct: 49  GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 108

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
             +F++   LF +M                                   + C +  N   
Sbjct: 109 NGRFEKAFVLFSDM-----------------------------------RHCGVKAN--- 130

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            +AL D ++ CG+M  A  +FG +  +DV+SW A++ GY  +G  D +   F  M     
Sbjct: 131 -HALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGL 189

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQ--TSNIRPDEFTIVS--ILTACANLGALELGEW 369
           V     +   LR +     L +  ++    + +    + IV+  ++ A A  G+L   + 
Sbjct: 190 VPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKD 249

Query: 370 VKTYIDKNKVKNDIF----------------VGNALIDMYCKCGDVEKAQRVFREMLRKD 413
           ++    K  +K D+F                +GNALIDMY K G++E A+R F EM  K+
Sbjct: 250 LR----KGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKN 305

Query: 414 KFTWTAMIVGLAINGHGD--KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471
             +WT++I G A +G+G    +  +F +M       +E ++  +LS     G+ +E    
Sbjct: 306 VISWTSLISGYAKHGYGHMAHARYVFDEMRH----RNEASWSTMLSGYVRVGLYEEAVGL 361

Query: 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531
           F  M    G+EPN      ++    R+G++ +    +    +K   I+    +G   VH 
Sbjct: 362 FCQMW-GLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVK-TGILGDVYVGTALVHF 419

Query: 532 DAEMAEM-AAKQILELDPDNEAV 553
              +  +  A+++ E  PD+  V
Sbjct: 420 YGSIGLVYNAQKLFEEMPDHNVV 442



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 157/358 (43%), Gaps = 53/358 (14%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           + IH   +KLGL +N  + N L+T   SE G  + A  VF+ +    +  WN+M+  Y +
Sbjct: 597 RGIHGLVVKLGLDSNVCICNTLLTL-YSEAGRSEDAELVFQAMTERDLISWNSMMACYVQ 655

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF--------------------------- 125
                +G+ I  ++L+   +PD  T+  L+ G                            
Sbjct: 656 DGKCLDGLKILAELLQMG-KPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYIT 714

Query: 126 ------TRDIAV-EFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
                 T ++AV E G++LH  V+K GF+S + V NA +  Y  CGE+     +      
Sbjct: 715 MVSLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPIN 774

Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
              ++WN + S + R   F + R+ F EM + G  P  VT V +LSAC     +D G   
Sbjct: 775 RSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAY 834

Query: 239 H-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV----ISWTAIVTGYI 293
           +    +E  + P +     + D+    G +  A    G IK   V    ++W +++    
Sbjct: 835 YDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAE---GFIKEMPVPPNDLAWRSLLAACR 891

Query: 294 NRGQVDMARQYFDQMPERD------YVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
             G +++AR+  + + E D      YVL++ +        ++ +   L +EM ++NI+
Sbjct: 892 IHGNLELARKTAEHLLELDPSDDSAYVLYSNVC---ATSGKWEDVENLRKEMGSNNIK 946



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 120/280 (42%), Gaps = 20/280 (7%)

Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
           + R  EAL L   + ++  R D    + IL  C +  A + G  + T++  N   +D+ +
Sbjct: 11  LGRLAEALKL---LSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHL 67

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
              LI  Y K GDV  A+ VF  M  +   +WTAM+ G + NG  +K+  +FS M    +
Sbjct: 68  NTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV 127

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
             +    V   S C   G +++    F  M     +E +   +  M+      G  +++ 
Sbjct: 128 KANHAL-VDFHSKC---GKMEDASYLFGTM-----MERDVVSWNAMIGGYAVQGFADDSF 178

Query: 506 EVIKNM---PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-EAVYVLLCNIY 561
            + ++M    + P+    G++L A        +A      I +L   + + V  LL N Y
Sbjct: 179 CMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAY 238

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601
           A      + ++LR+ +L    KK    S   + G  HE +
Sbjct: 239 AKNGSLRSAKDLRKGML----KKDLFSSTALITGYAHEGI 274


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/756 (32%), Positives = 386/756 (51%), Gaps = 110/756 (14%)

Query: 21  SPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR 77
           S ++ C  +  L   K++HS      +  +  +  KLV+F  +  GD+K   +VF  + +
Sbjct: 104 SVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYAT-CGDLKEGRRVFDTMEK 162

Query: 78  PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV---RPDNYTFPFLLKGFTRDIAVEFG 134
            +V LWN M+  Y++I   K  + ++  M++  +   RP++                   
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPES------------------- 203

Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
                                             A  +FD     DV++WN+M SGY   
Sbjct: 204 ----------------------------------ASELFDKLCDRDVISWNSMISGYVSN 229

Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
              +    ++ +M   G+     TI+ VL  CA    L +GK  H    +      +   
Sbjct: 230 GLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFS 289

Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER--- 311
           N L DMY+ CG++  AL +F  +  ++V+SWT+++ GY   G  D A     QM +    
Sbjct: 290 NTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVK 349

Query: 312 --------------------------DYV----------LWTAMIDGYLRVNRFREALTL 335
                                     DY+          +  A++D Y +      A ++
Sbjct: 350 LDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSV 409

Query: 336 FREMQTSNI----------RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
           F  M   +I          +PD  T+  IL ACA+L ALE G+ +  YI +N   +D  V
Sbjct: 410 FSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHV 469

Query: 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
            NAL+D+Y KCG +  A+ +F  +  KD  +WT MI G  ++G+G++++  F++M  A I
Sbjct: 470 ANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529

Query: 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505
            PDEV+++ +L AC+H+G++++G  +F  M     IEP   HY CMVDLL R G+L++A 
Sbjct: 530 EPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAY 589

Query: 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565
           + I+ +P+ P++ +WGALL  CR++ D E+AE  A+++ EL+P+N   YVLL NIYA   
Sbjct: 590 KFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAE 649

Query: 566 RWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG-DKSHPQTKEIYLKLDEMTSDL 624
           + +  + +R+ I  +G++K PGCS IE+ G V+ FV+G + SHP +K+I   L +M   +
Sbjct: 650 KREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKM 709

Query: 625 KFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCH 684
           K  GY P      ++  E  KE A+  HSEKLAMAFGL++  P  TIR+ KNLR+C DCH
Sbjct: 710 KEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCH 769

Query: 685 RMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            MAK +S    RE+++RD  RFHHFK G CSC+ +W
Sbjct: 770 EMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 102/262 (38%), Gaps = 55/262 (20%)

Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
           + A I  + ++     A+ L    Q S +    +   S+L  CA L +L  G+ V + I 
Sbjct: 69  YNAKILHFCQLGDLENAMELVCMCQKSELETKTYG--SVLQLCAGLKSLTDGKKVHSIIK 126

Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK----------------------- 412
            N V  D  +G  L+  Y  CGD+++ +RVF  M +K                       
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 413 ----------------------------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444
                                       D  +W +MI G   NG  ++ L ++ QM+   
Sbjct: 187 LFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504
           I  D  T + VL  C ++G +  G+   + + I+   E        ++D+  + G L+ A
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHS-LAIKSSFERRINFSNTLLDMYSKCGDLDGA 305

Query: 505 LEVIKNMPMKPNSIVWGALLGA 526
           L V + M  + N + W +++  
Sbjct: 306 LRVFEKMGER-NVVSWTSMIAG 326


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/656 (34%), Positives = 349/656 (53%), Gaps = 49/656 (7%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV----EFGKELH 138
           W   I+  +      + + ++L M  SD      +    L G  +  A       G  LH
Sbjct: 22  WAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLH 81

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGE--------------VDMARGIFDVSYKDDVVTW 184
              L+ G  +  F  NAL++ YC                  ++  R +FD   + DVV+W
Sbjct: 82  ALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSW 141

Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
           N +  G     +  E   L  EM R G  P S T+  VL   A+  D+  G   H +   
Sbjct: 142 NTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATR 201

Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
                ++ + ++L DMYA C    +++++                               
Sbjct: 202 NGFHDDVFVGSSLIDMYANCTRTDYSVKV------------------------------- 230

Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
           FD +P RD +LW +M+ G  +     EAL LFR M  S I+P   T  S++ AC NL +L
Sbjct: 231 FDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASL 290

Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
            LG+ +  Y+ +     ++F+ ++LIDMYCKCG+V  A+R+F  +   D  +WTAMI+G 
Sbjct: 291 LLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGH 350

Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
           A++G   ++L +F +M   ++ P+ +T++ VL+AC+H G+VD+G +YF  M+  +GI P+
Sbjct: 351 ALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPS 410

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
             H+  + D LGR G L EA   I  M +KP + VW  LL AC+VH++  +AE  AK+I 
Sbjct: 411 LEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIF 470

Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
           +L+P +   +++L N Y++  RW+    LR+ +  +G++K P CS IE+    H FVA D
Sbjct: 471 DLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHD 530

Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
           KSHP  + I   L+  +  +   GY+P+  +VF D+ EE K   +  HSEKLA+ FG+IS
Sbjct: 531 KSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIIS 590

Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + PG TIR++KNLR+CVDCH + K +S +  RE+++RD  RFHHFK G CSC D+W
Sbjct: 591 TPPGTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 177/403 (43%), Gaps = 46/403 (11%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCC------SEKGDMKYAC-------KVFRKIPRPSV 80
            +H+  ++ G   +    N L+   C      S   +M  +        KVF ++P   V
Sbjct: 79  SLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDV 138

Query: 81  CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140
             WNT++ G +    H   + +  +M +   +PD++T   +L  F     V  G ELH  
Sbjct: 139 VSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGF 198

Query: 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDET 200
             + GF   VFV ++LI  Y  C   D +  +FD     D + WN+M +G  +    DE 
Sbjct: 199 ATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEA 258

Query: 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDM 260
             LF  M   G+ P  VT   ++ AC  L  L +GK+ H YV       N+ + ++L DM
Sbjct: 259 LGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDM 318

Query: 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320
           Y  CG +  A  IF  I++ D++SWTA++ G+   G                        
Sbjct: 319 YCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPA---------------------- 356

Query: 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYIDKNKV 379
                    REAL LF  M+  N++P+  T +++LTAC++ G ++ G ++  +  D   +
Sbjct: 357 ---------REALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGI 407

Query: 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
              +    AL D   + G +E+A      M ++     W+ ++
Sbjct: 408 VPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLL 450



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 140/287 (48%), Gaps = 7/287 (2%)

Query: 67  YACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126
           Y+ KVF  +P     LWN+M+ G ++  S    + ++  ML S ++P   TF  L+    
Sbjct: 226 YSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACG 285

Query: 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186
              ++  GK+LH +V++ GFD +VF+ ++LI  YC CG V +AR IFD     D+V+W A
Sbjct: 286 NLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTA 345

Query: 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKEC 245
           M  G+       E   LF  ME   + P  +T + VL+AC+    +D G K  +      
Sbjct: 346 MIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHY 405

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS-WTAIVTG-YINRGQV---DM 300
            IVP+L    AL D     G++  A      +K K   S W+ ++    +++  V   ++
Sbjct: 406 GIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEV 465

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
           A++ FD  P R       + + Y    R+ EA  L + M+   ++ +
Sbjct: 466 AKKIFDLEP-RSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKE 511



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 13/195 (6%)

Query: 4   NSSISP-PSTLTQETPLISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCC 59
           +S I P P T +   P       C ++  L   KQ+H+  I+ G   N  + + L+   C
Sbjct: 267 HSGIKPMPVTFSSLIP------ACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYC 320

Query: 60  SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
            + G++  A ++F +I  P +  W  MI G++     +  ++++  M   +++P++ TF 
Sbjct: 321 -KCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFL 379

Query: 120 FLLKGFTRDIAVEFG-KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARG-IFDVSY 177
            +L   +    V+ G K  +     +G   S+    AL  T    G+++ A   I  +  
Sbjct: 380 AVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKI 439

Query: 178 KDDVVTWNAMFSGYK 192
           K     W+ +    K
Sbjct: 440 KPTASVWSTLLRACK 454


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/445 (47%), Positives = 300/445 (67%), Gaps = 6/445 (1%)

Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
           N DV+  T ++  Y   G +D+A++ FD+MP+ D   W A+I G+ + +R  +A+  F+ 
Sbjct: 135 NADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKR 194

Query: 339 MQT-SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
           M+   N+RP+  T+   L AC+ LGAL+ GE V  YI + K+ +++ V N +IDMY KCG
Sbjct: 195 MKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCG 254

Query: 398 DVEKAQRVFREMLRKDK--FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455
            ++KA  VF  M R DK   TW  MI+  A++G G K+LD+F ++ R+ + PD V+Y+ V
Sbjct: 255 SMDKAYWVFENM-RCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAV 313

Query: 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
           L AC H G+V++G + F  MT Q G+EPN  HYG MVDLLGRAG L EA +++ ++P  P
Sbjct: 314 LCACNHAGLVEDGLKLFNSMT-QRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-P 371

Query: 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQ 575
           N ++W  LLGACR + D EMAE+A+++++E+   +   +VLL N+YAA  RWD+   +R 
Sbjct: 372 NMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAARQRWDDVGRVRD 431

Query: 576 MILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635
            +  R +KKTPG S IE+ G +++FV GD+SH   +EIY KLDE+   +K  GY  D S 
Sbjct: 432 AMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSN 491

Query: 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYD 695
           V  D+G+EDKE A+  HSEKLA+AFGL  +  G  I+++KNLR+C DCH + KL+S +Y 
Sbjct: 492 VLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYI 551

Query: 696 REVIVRDKTRFHHFKHGSCSCKDYW 720
           RE+IVRD+TRFH FK G CSCKDYW
Sbjct: 552 REIIVRDRTRFHRFKEGLCSCKDYW 576



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 198/404 (49%), Gaps = 36/404 (8%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIPRPSVC 81
           ++ C S  Q+KQ+ +  I  G     + + KL+  C  S  GD+ YA  +FR IP PS  
Sbjct: 8   LQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPSTN 67

Query: 82  LWNTMIKGYSRIDSHKNGVLIYLDMLKSDV--RPDNYTFPFLLKGFTRDIAVEFGKELHC 139
            WN +I+G +      N V  Y  M  S+   R D  T  F LK   R +A     +LH 
Sbjct: 68  DWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHS 127

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            +L+FGF++ V +Q  L+  Y   G++D+A+ +FD   + D+ +WNA+ +G+ +  +  +
Sbjct: 128 QLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPAD 187

Query: 200 TRKLFGEMERKGVL-PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258
               F  M+  G L P +VT+   L AC++L  L  G+  H+Y+ E K+  N+ + N + 
Sbjct: 188 AIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVI 247

Query: 259 DMYAACGEMGFALEIFGNIK-NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
           DMYA CG M  A  +F N++ +K +I+W  ++  +   G                     
Sbjct: 248 DMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHG--------------------- 286

Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
              DG+       +AL LF ++  S + PD  + +++L AC + G +E G  +   + + 
Sbjct: 287 ---DGH-------KALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR 336

Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421
            ++ +I    +++D+  + G +++A  +   +   +   W  ++
Sbjct: 337 GLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLL 380



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 152/311 (48%), Gaps = 12/311 (3%)

Query: 34  QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
           Q+HSQ ++ G   +  +Q  L+    ++ GD+  A K+F ++P+P +  WN +I G+++ 
Sbjct: 124 QLHSQLLRFGFNADVLLQTTLLD-AYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQG 182

Query: 94  DSHKNGVLIYLDM-LKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               + ++ +  M +  ++RP+  T    L   ++  A++ G+ +H ++++   +S+V V
Sbjct: 183 SRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQV 242

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKD-DVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
            N +I  Y  CG +D A  +F+    D  ++TWN M   +       +   LF ++ R G
Sbjct: 243 CNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSG 302

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           + P +V+ + VL AC     ++ G +    + +  + PN+    ++ D+    G +  A 
Sbjct: 303 MSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAY 362

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER------DYVLWTAMIDGYLR 325
           +I  ++   +++ W  ++      G V+MA     ++ E       D+VL + +     R
Sbjct: 363 DIVSSLPFPNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAARQR 422

Query: 326 ---VNRFREAL 333
              V R R+A+
Sbjct: 423 WDDVGRVRDAM 433


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/559 (40%), Positives = 329/559 (58%), Gaps = 42/559 (7%)

Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQF-----DETRKLFGEMERKGV-LPTSVTIVLV 222
           AR +FD   +     +N++                +T  L+  M   G   P S T+  V
Sbjct: 77  ARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFV 136

Query: 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282
           L AC  L +   G++ H       + P+  ++  L ++YA C E                
Sbjct: 137 LKACTALGE---GQQLHAQAFGHGLEPSPYVQTGLLNLYARCEE---------------- 177

Query: 283 ISWTAIVTGYINRGQVDMARQYFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFREMQT 341
                          V +AR  FD M E ++ V W++MI GY R+    EAL LFR+MQ 
Sbjct: 178 ---------------VALARNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQA 222

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
             + PDE T+VS+++ACA  GAL+LG+WV  +ID+  +  D+ +  ALIDMY KCG +E+
Sbjct: 223 VGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIER 282

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
           A+ VF  M+ +D   W+AMIVGLA++G  + +L +FS+ML+  + P+ VT+VGVLSAC H
Sbjct: 283 AKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAH 342

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
           +G+VD+GR Y+  M  + GIE +  +YGCMVDLL R+G L+EA   +  MP+ PNS++W 
Sbjct: 343 SGLVDDGRRYWCTMQ-ELGIEASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWR 401

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
            LL A +     ++ E+A++++ EL+P N   YVLL N+YA  ++WD  R +R+ + D  
Sbjct: 402 NLLVASKSSNRIDIVELASRRLFELEPQNPENYVLLSNLYALNSQWDRVRYMRKKMKDNN 461

Query: 582 IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
           +    GCS IE+NG +H+FV  D SHP+ K+I L L E+   +   G+ P  + V  DV 
Sbjct: 462 VTVVAGCSSIEINGYLHKFVVSDGSHPEIKKIRLVLREIADRVLCAGHKPWTAAVLHDVV 521

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
           EE+KE A+ +HSE+LA+A+GL+ +     IR+VKNLR C DCH + K++S  Y RE+IVR
Sbjct: 522 EEEKEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVTKIISKSYGREIIVR 581

Query: 702 DKTRFHHFKHGSCSCKDYW 720
           D+ RFH F  GSCSC D+W
Sbjct: 582 DRVRFHRFIGGSCSCNDFW 600



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 200/421 (47%), Gaps = 47/421 (11%)

Query: 16  ETPLISPIETCESMHQLKQIHSQTIKLGL--LTNPTVQNKLVTFCCSEKGDMK---YACK 70
           E  ++S +  C  +  L+  H+  ++L L  LT     +KL+  C +         YA  
Sbjct: 20  EARVVSLVRRCPGLRALRGAHAHFLRLRLPRLTYAFALSKLLASCAAASATTVASSYARA 79

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSH-----KNGVLIYLDMLKS-DVRPDNYTFPFLLKG 124
           +F +IP P+   +N++I+  S   S       +  L+Y  ML +    P+++T  F+LK 
Sbjct: 80  LFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFVLKA 139

Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD-DVVT 183
            T   A+  G++LH      G + S +VQ  L++ Y  C EV +AR +FD   +D ++V 
Sbjct: 140 CT---ALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKNLVA 196

Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
           W++M  GY R+   +E   LF +M+  GV P  VT+V V+SACAK   LD+GK  H ++ 
Sbjct: 197 WSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFID 256

Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
              I  +L L  AL DMYA CG +  A  +F ++  +D  +W+A++ G    G  +    
Sbjct: 257 RKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAE---- 312

Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
                                      +AL LF  M    +RP+  T V +L+ACA+ G 
Sbjct: 313 ---------------------------DALGLFSRMLQLKVRPNNVTFVGVLSACAHSGL 345

Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIV 422
           ++ G      + +  ++  +     ++D+ C+ G +++A      M +  +   W  ++V
Sbjct: 346 VDDGRRYWCTMQELGIEASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLV 405

Query: 423 G 423
            
Sbjct: 406 A 406



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 144/307 (46%), Gaps = 13/307 (4%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC--CSEKGDMKYACKVFRK-IPRPS 79
           ++ C ++ + +Q+H+Q    GL  +P VQ  L+     C E   +  A  VF   +   +
Sbjct: 137 LKACTALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEE---VALARNVFDGMVEDKN 193

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHC 139
           +  W++MI GYSR+      + ++ DM    V PD  T   ++    +  A++ GK +H 
Sbjct: 194 LVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHA 253

Query: 140 HVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199
            + + G    + +  ALI  Y  CG ++ A+ +FD   + D   W+AM  G       ++
Sbjct: 254 FIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAED 313

Query: 200 TRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259
              LF  M +  V P +VT V VLSACA    +D G+R    ++E  I  ++     + D
Sbjct: 314 ALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQELGIEASMENYGCMVD 373

Query: 260 MYAACGEMGFALE-IFGNIKNKDVISWTAIVTGYINRGQVDM----ARQYFDQMPE--RD 312
           +    G +  A   + G   + + + W  ++    +  ++D+    +R+ F+  P+   +
Sbjct: 374 LLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFELEPQNPEN 433

Query: 313 YVLWTAM 319
           YVL + +
Sbjct: 434 YVLLSNL 440


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/570 (37%), Positives = 333/570 (58%), Gaps = 41/570 (7%)

Query: 23  IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL 82
           ++ C +   L+Q+H++ I+ GL  +  + ++ +T C S   +  Y   VF  +  PS  L
Sbjct: 32  LKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNS-LSNFSYTTSVFNGVSSPSTVL 90

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142
           WNT IKGYS   S    V +++ M +SD  PD +T+P L+K  ++   V+ G   H   +
Sbjct: 91  WNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAV 150

Query: 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRK 202
           + G    VFV  +LI  Y  CGE+  AR +FD   + +VV+W AM +GY       E RK
Sbjct: 151 RCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARK 210

Query: 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262
           LF EM  K                                       N +  NA+   Y 
Sbjct: 211 LFDEMPEK---------------------------------------NAVSWNAIISGYV 231

Query: 263 ACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG 322
            CG++  A ++F  + +++V+S+T ++ GY   G +  AR  F++ PERD V W+A+I G
Sbjct: 232 KCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISG 291

Query: 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK-N 381
           Y++  +  EA+ +F EM + N++PDEF +VS+++AC+ +G+LEL +WV  Y+ K+ +  +
Sbjct: 292 YVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVH 351

Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441
              V  ALIDM  KCG +++A ++F EM ++D  ++ +M+ GL+I+G G +++ +FS+ML
Sbjct: 352 RAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRML 411

Query: 442 RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501
              + PD+V +  +L+AC+  G+VDEG  YF  M   + I P+  HY CMVDLLGRAG L
Sbjct: 412 NEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRL 471

Query: 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
            EA E++K+MP++P++  WGALLGAC++H D E+ E+ A Q+ EL+P N   YVLL NIY
Sbjct: 472 KEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIY 531

Query: 562 AACNRWDNFRELRQMILDRGIKKTPGCSMI 591
           AA  +W +   LR  + +RGI+K PGCS I
Sbjct: 532 AAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 203/449 (45%), Gaps = 51/449 (11%)

Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
           LLK  T    +E   ++H  +++ G     F+ +  ++             +F+      
Sbjct: 31  LLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPS 87

Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
            V WN    GY        T  LF  M+R   +P   T   ++ AC+K+  +  G   H 
Sbjct: 88  TVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHG 147

Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
               C +  ++ +  +L D+Y  CGE+  A ++F  +  ++V+SWTA++ GY +   +  
Sbjct: 148 SAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVE 207

Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
           AR+ FD+MPE++ V W A+I GY++    R A  +F EM   N       +VS  T    
Sbjct: 208 ARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRN-------VVSFTT---- 256

Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
                                       +ID Y K GD+  A+ VF E   +D   W+A+
Sbjct: 257 ----------------------------MIDGYAKSGDMASARFVFEEAPERDVVAWSAL 288

Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
           I G   NG  ++++ +F +M   ++ PDE   V ++SAC+  G ++  + +  D   +  
Sbjct: 289 ISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAK-WVDDYVRKSS 347

Query: 481 IEPNEAHY-GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
           I+ + AH    ++D+  + G ++ A ++ + MP K + I + +++    +H     A   
Sbjct: 348 IDVHRAHVIAALIDMNAKCGSMDRATKLFEEMP-KRDLISYCSMMQGLSIHGCGPQAVSL 406

Query: 540 AKQILE--LDPDNEAVYVLLCNIYAACNR 566
             ++L   L PD+ A  V+L     AC+R
Sbjct: 407 FSRMLNEGLTPDDVAFTVIL----TACSR 431


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/708 (34%), Positives = 385/708 (54%), Gaps = 38/708 (5%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L++ +  C    ++   K +H   +KL L     + N L+    S+ G +  A  +F+  
Sbjct: 45  LVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMY-SKCGCITNAQMIFKMN 103

Query: 76  PRPSVCLWNTMIKGYS-RIDSHKN-GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
              +V  WNTM+ G+S   D+H    VL  +     DV+ D  T    +     +  +  
Sbjct: 104 NNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPS 163

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
            KELHC+ LK  F  +  V NA +++Y  CG +  A+ +F       V +WNA+  G+ +
Sbjct: 164 LKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 223

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                 +     +M+  G+LP S T+  +LSAC+KLK L +GK  H              
Sbjct: 224 SNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVH-------------- 269

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
                         GF   I  N   +D+  + ++++ YI+ G++   +  FD M ++  
Sbjct: 270 --------------GF---IIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSL 312

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           V W  +I GYL+      AL +FR+M    I+    +++ +  AC+ L +L LG     Y
Sbjct: 313 VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAY 372

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
             K+ +++D F+  +LIDMY K G + ++ +VF  +  K   +W AMI+G  I+G   ++
Sbjct: 373 ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEA 432

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           + +F +M R    PD++T++GVL+AC H+G++ EG  Y   M    G++PN  HY C++D
Sbjct: 433 IKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVID 492

Query: 494 LLGRAGHLNEALEVI-KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           +LGRAG L++AL V+ + M  + +  +W +LL +CR+H++ EM E  A ++ EL+P+   
Sbjct: 493 MLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPE 552

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVLL N+YA   +W++ R++RQ + +  ++K  GCS IE+N  V  FV G++     +E
Sbjct: 553 NYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEE 612

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I      +   +  +GY PD   V  D+ EE+K   +  HSEKLA+ +GLI +  G TIR
Sbjct: 613 IKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIR 672

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + KNLR+CVDCH  AKL+S V +RE++VRD  RFHHFK+G CSC DYW
Sbjct: 673 VYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 136/517 (26%), Positives = 236/517 (45%), Gaps = 57/517 (11%)

Query: 83  WNTMIKGYSRIDSHKNGVLIYLDMLKSD----VRPDNYTFPFLLKGFTRDIAVEFGKELH 138
           WN+MI+ +S     +   L+  +M++ +      PD  T   +L    R+  +  GK +H
Sbjct: 6   WNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVH 65

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
              +K   D  + + NAL+  Y  CG +  A+ IF ++   +VV+WN M  G+       
Sbjct: 66  GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTH 125

Query: 199 ETRKLFGEMERKG--VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256
            T  +  +M   G  V    VTI+  +  C     L   K  H Y  + + V N ++ NA
Sbjct: 126 GTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANA 185

Query: 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW 316
               YA CG + +A  +F  I++K V SW                               
Sbjct: 186 FVASYAKCGSLSYAQRVFHGIRSKTVNSW------------------------------- 214

Query: 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376
            A+I G+ + N  R +L    +M+ S + PD FT+ S+L+AC+ L +L LG+ V  +I +
Sbjct: 215 NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 274

Query: 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDM 436
           N ++ D+FV  +++ +Y  CG++   Q +F  M  K   +W  +I G   NG  D++L +
Sbjct: 275 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 334

Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MVDLL 495
           F QM+   I    ++ + V  AC+    +  GRE  A   ++H +E ++A   C ++D+ 
Sbjct: 335 FRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHA-YALKHLLE-DDAFIACSLIDMY 392

Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL-----DPDN 550
            + G + ++ +V   +  K  +  W A++    +H    +A+ A K   E+     +PD+
Sbjct: 393 AKNGSITQSSKVFNGLKEKSTA-SWNAMIMGYGIH---GLAKEAIKLFEEMQRTGHNPDD 448

Query: 551 EAVYVLLCNIYAACNR----WDNFRELRQMILDRGIK 583
               +    +  ACN      +  R L QM    G+K
Sbjct: 449 ----LTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLK 481



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 137/295 (46%), Gaps = 33/295 (11%)

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEM-ERKG---VLPTSVTIVLVLSACAKLKDLDVG 235
           + V+WN+M   +      +E+  L GEM E  G    +P   T+V VL  CA+ +++ +G
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG 61

Query: 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINR 295
           K  H +  + ++   L+L NAL DMY+ CG +  A  IF    NK+V+SW  +V G+   
Sbjct: 62  KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAE 121

Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
           G        FD + +        M+ G                    +++ DE TI++ +
Sbjct: 122 GDT---HGTFDVLRQ--------MLAG------------------GEDVKADEVTILNAV 152

Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
             C +   L   + +  Y  K +   +  V NA +  Y KCG +  AQRVF  +  K   
Sbjct: 153 PVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVN 212

Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
           +W A+I G A +     SLD   QM  + ++PD  T   +LSAC+    +  G+E
Sbjct: 213 SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 267



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 122/270 (45%), Gaps = 16/270 (5%)

Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSN----IRPDEFTIVSILTACANLGALEL 366
           R++V W +MI  +       E+  L  EM   N      PD  T+V++L  CA    + L
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAI 426
           G+ V  +  K ++  ++ + NAL+DMY KCG +  AQ +F+    K+  +W  M+ G + 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 427 NGHGDKSLDMFSQMLRAS--IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
            G    + D+  QML     +  DEVT +  +  C H   +   +E     +++     N
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHC-YSLKQEFVYN 179

Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRVHRDAEMAEMAAKQ- 542
           E      V    + G L+ A  V   +  K  NS  W AL+G      D  ++  A  Q 
Sbjct: 180 ELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS--WNALIGGHAQSNDPRLSLDAHLQM 237

Query: 543 -ILELDPDNEAVYVLLCNIYAACNRWDNFR 571
            I  L PD+  V    C++ +AC++  + R
Sbjct: 238 KISGLLPDSFTV----CSLLSACSKLKSLR 263


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/689 (34%), Positives = 358/689 (51%), Gaps = 69/689 (10%)

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-------VRPDNYTFPFLL 122
           ++F  +P+     +N +I G+S   +       Y  +L+ +       VRP   T   ++
Sbjct: 97  RLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMV 156

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC--------------------- 161
              +       G+++HC +++ GF +  F  + L+  Y                      
Sbjct: 157 MAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVV 216

Query: 162 ----------LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
                      C  V+ ARG+F+     D +TW  M +G  +     E   +F  M  +G
Sbjct: 217 MYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEG 276

Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
           V     T   +L+AC  L   + GK+ H Y        N+ + +AL DMY+ C  +  A 
Sbjct: 277 VGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAE 336

Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
            +F  +  K++IS                               WTAMI GY +     E
Sbjct: 337 AVFRRMTCKNIIS-------------------------------WTAMIVGYGQNGCGEE 365

Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
           A+ +F EMQT  I+P++FT+ S++++CANL +LE G         + ++  I V +AL+ 
Sbjct: 366 AVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVT 425

Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
           +Y KCG +E A R+F EM   D+ ++TA++ G A  G   +++D+F +ML   + P+ VT
Sbjct: 426 LYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVT 485

Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
           ++GVLSAC+ +G+V++G  YF  M   HGI   + HY CM+DL  R+G L EA E I+ M
Sbjct: 486 FIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQM 545

Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
           P  P++I W  LL ACR+  D E+ + AA+ +L+ DP N A YVLLC+++A+   W    
Sbjct: 546 PRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVA 605

Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
            LR+ + DR +KK PGCS I+    VH F A D+SHP +  IY KL  + S +   GY P
Sbjct: 606 LLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKP 665

Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
           D+S V  DV + +K   +  HSEKLA+AFGLI     + IR+VKNLR+CVDCH   K +S
Sbjct: 666 DVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVCVDCHNATKFIS 725

Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
            +  R+++VRD  RFH F +G CSC D+W
Sbjct: 726 KITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 223/470 (47%), Gaps = 45/470 (9%)

Query: 137 LHCHVLK-FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
           +HC VL+        +V N L++ Y   G + +AR +FD     ++ T NA+ S     +
Sbjct: 31  VHCLVLRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHAR 90

Query: 196 QFDETRKLFGEMERKG--------------------------------------VLPTSV 217
              +  +LF  M ++                                       V P+ +
Sbjct: 91  LLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRI 150

Query: 218 TIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
           T+  ++ A + L D  +G++ H  +            + L DMYA  G +G A  +F  +
Sbjct: 151 TMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEM 210

Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
             K+V+ +  ++TG +    V+ AR  F+ M +RD + WT M+ G  +     EAL +FR
Sbjct: 211 VVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFR 270

Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397
            M+   +  D++T  SILTAC  L A E G+ +  Y  +     +IFVG+AL+DMY KC 
Sbjct: 271 RMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCR 330

Query: 398 DVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457
            +  A+ VFR M  K+  +WTAMIVG   NG G++++ +FS+M    I P++ T   V+S
Sbjct: 331 SIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVIS 390

Query: 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS 517
           +C +   ++EG ++   M +  G+ P       +V L G+ G + +A  +   MP   + 
Sbjct: 391 SCANLASLEEGAQFHC-MALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFH-DQ 448

Query: 518 IVWGALL-GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
           + + AL+ G  +  +  E  ++  K +L+    N   ++    + +AC+R
Sbjct: 449 VSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFI---GVLSACSR 495



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 191/432 (44%), Gaps = 71/432 (16%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           +Q+H Q ++LG        + LV    ++ G +  A +VF ++   +V ++NTMI G  R
Sbjct: 169 RQVHCQIMRLGFGAYAFTWSPLVDMY-AKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLR 227

Query: 93  I----------------DS----------HKNGVL-----IYLDMLKSDVRPDNYTFPFL 121
                            DS           +NG+      ++  M    V  D YTF  +
Sbjct: 228 CKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSI 287

Query: 122 LKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV 181
           L       A E GK++H + ++  +D ++FV +AL+  Y  C  + +A  +F      ++
Sbjct: 288 LTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNI 347

Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241
           ++W AM  GY +    +E  ++F EM+  G+ P   T+  V+S+CA L  L+ G + H  
Sbjct: 348 ISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCM 407

Query: 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMA 301
                + P + + +AL  +Y  CG +  A  +F  +   D +S+TA+V+GY   G+    
Sbjct: 408 ALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKA--- 464

Query: 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361
                                       +E + LF +M    ++P+  T + +L+AC+  
Sbjct: 465 ----------------------------KETIDLFEKMLLKGVKPNGVTFIGVLSACSRS 496

Query: 362 GALELGEWVKTYIDKNKVKNDIFVGN----ALIDMYCKCGDVEKAQRVFREMLR-KDKFT 416
           G +E G    +Y    +  + I + +     +ID+Y + G +++A+   R+M R  D   
Sbjct: 497 GLVEKG---CSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIG 553

Query: 417 WTAMIVGLAING 428
           W  ++    + G
Sbjct: 554 WATLLSACRLRG 565



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 156/326 (47%), Gaps = 18/326 (5%)

Query: 33  KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
           KQIH+ TI+     N  V + LV    S+   ++ A  VFR++   ++  W  MI GY +
Sbjct: 301 KQIHAYTIRTLYDGNIFVGSALVDMY-SKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQ 359

Query: 93  IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
               +  V ++ +M    ++P+++T   ++       ++E G + HC  L  G    + V
Sbjct: 360 NGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITV 419

Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
            +AL++ Y  CG ++ A  +FD     D V++ A+ SGY +  +  ET  LF +M  KGV
Sbjct: 420 SSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGV 479

Query: 213 LPTSVTIVLVLSACAKLKDLDVG-KRAHRYVKECKIVPNLILENALT---DMYAACGEMG 268
            P  VT + VLSAC++   ++ G    H   ++  IV   +L++  T   D+Y+  G + 
Sbjct: 480 KPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIV---LLDDHYTCMIDLYSRSGRLK 536

Query: 269 FALEIFGNI-KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD------YVLWTAMID 321
            A E    + +  D I W  +++    RG +++ +   + + + D      YVL  +M  
Sbjct: 537 EAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSM-- 594

Query: 322 GYLRVNRFREALTLFREMQTSNIRPD 347
            +     + E   L R M+   ++ +
Sbjct: 595 -HASKGEWSEVALLRRGMRDRQVKKE 619



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 34/220 (15%)

Query: 19  LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP 78
           +IS      S+ +  Q H   +  GL    TV + LVT    + G ++ A ++F ++P  
Sbjct: 388 VISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTL-YGKCGSIEDAHRLFDEMPFH 446

Query: 79  SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELH 138
               +  ++ GY++    K  + ++  ML   V+P+  TF  +L   +R   VE G    
Sbjct: 447 DQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKG---- 502

Query: 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFD 198
                               +Y    + D    + D  Y         M   Y R  +  
Sbjct: 503 -------------------CSYFHSMQQDHGIVLLDDHY-------TCMIDLYSRSGRLK 536

Query: 199 ETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
           E  +   +M R    P ++    +LSAC    D+++GK A
Sbjct: 537 EAEEFIRQMPR---CPDAIGWATLLSACRLRGDMEIGKWA 573


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/708 (34%), Positives = 385/708 (54%), Gaps = 38/708 (5%)

Query: 19  LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
           L++ +  C    ++   K +H   +KL L     + N L+    S+ G +  A  +F+  
Sbjct: 295 LVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMY-SKCGCITNAQMIFKMN 353

Query: 76  PRPSVCLWNTMIKGYS-RIDSHKN-GVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEF 133
              +V  WNTM+ G+S   D+H    VL  +     DV+ D  T    +     +  +  
Sbjct: 354 NNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPS 413

Query: 134 GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKR 193
            KELHC+ LK  F  +  V NA +++Y  CG +  A+ +F       V +WNA+  G+ +
Sbjct: 414 LKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 473

Query: 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
                 +     +M+  G+LP S T+  +LSAC+KLK L +GK  H              
Sbjct: 474 SNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVH-------------- 519

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
                         GF   I  N   +D+  + ++++ YI+ G++   +  FD M ++  
Sbjct: 520 --------------GF---IIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSL 562

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
           V W  +I GYL+      AL +FR+M    I+    +++ +  AC+ L +L LG     Y
Sbjct: 563 VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAY 622

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
             K+ +++D F+  +LIDMY K G + ++ +VF  +  K   +W AMI+G  I+G   ++
Sbjct: 623 ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEA 682

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
           + +F +M R    PD++T++GVL+AC H+G++ EG  Y   M    G++PN  HY C++D
Sbjct: 683 IKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVID 742

Query: 494 LLGRAGHLNEALEVI-KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
           +LGRAG L++AL V+ + M  + +  +W +LL +CR+H++ EM E  A ++ EL+P+   
Sbjct: 743 MLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPE 802

Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
            YVLL N+YA   +W++ R++RQ + +  ++K  GCS IE+N  V  FV G++     +E
Sbjct: 803 NYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEE 862

Query: 613 IYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIR 672
           I      +   +  +GY PD   V  D+ EE+K   +  HSEKLA+ +GLI +  G TIR
Sbjct: 863 IKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIR 922

Query: 673 IVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
           + KNLR+CVDCH  AKL+S V +RE++VRD  RFHHFK+G CSC DYW
Sbjct: 923 VYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 152/580 (26%), Positives = 266/580 (45%), Gaps = 61/580 (10%)

Query: 23  IETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPS 79
           I+ C  M  +     +H   +K GL+ +  V N LV+F  +  G +  A ++F  +P  +
Sbjct: 194 IKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTH-GFVTDALQLFDIMPERN 252

Query: 80  VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD----VRPDNYTFPFLLKGFTRDIAVEFGK 135
           +  WN+MI+ +S     +   L+  +M++ +      PD  T   +L    R+  +  GK
Sbjct: 253 LVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGK 312

Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
            +H   +K   D  + + NAL+  Y  CG +  A+ IF ++   +VV+WN M  G+    
Sbjct: 313 GVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEG 372

Query: 196 QFDETRKLFGEMERKG--VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253
               T  +  +M   G  V    VTI+  +  C     L   K  H Y  + + V N ++
Sbjct: 373 DTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELV 432

Query: 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313
            NA    YA CG + +A  +F  I++K V SW                            
Sbjct: 433 ANAFVASYAKCGSLSYAQRVFHGIRSKTVNSW---------------------------- 464

Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTY 373
               A+I G+ + N  R +L    +M+ S + PD FT+ S+L+AC+ L +L LG+ V  +
Sbjct: 465 ---NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGF 521

Query: 374 IDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433
           I +N ++ D+FV  +++ +Y  CG++   Q +F  M  K   +W  +I G   NG  D++
Sbjct: 522 IIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRA 581

Query: 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC-MV 492
           L +F QM+   I    ++ + V  AC+    +  GRE  A   ++H +E ++A   C ++
Sbjct: 582 LGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHA-YALKHLLE-DDAFIACSLI 639

Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL-----D 547
           D+  + G + ++ +V   +  K  +  W A++    +H    +A+ A K   E+     +
Sbjct: 640 DMYAKNGSITQSSKVFNGLKEKSTA-SWNAMIMGYGIH---GLAKEAIKLFEEMQRTGHN 695

Query: 548 PDNEAVYVLLCNIYAACNR----WDNFRELRQMILDRGIK 583
           PD+    +    +  ACN      +  R L QM    G+K
Sbjct: 696 PDD----LTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLK 731



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 44/465 (9%)

Query: 13  LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF--CCSEKGDMKYACK 70
           L Q +     IE    +HQL    ++     L  +  +  +++T    C    D ++   
Sbjct: 90  LLQASGKRKDIEMGRKIHQLVSGSTR-----LRNDDVLCTRIITMYAMCGSPDDSRF--- 141

Query: 71  VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDI 129
           VF  +   ++  WN +I  YSR + +   +  +++M+ + D+ PD++T+P ++K      
Sbjct: 142 VFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMS 201

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
            V  G  +H  V+K G    VFV NAL+S Y   G V  A  +FD+  + ++V+WN+M  
Sbjct: 202 DVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIR 261

Query: 190 GYKRVKQFDETRKLFGE-MERKG---VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC 245
            +      +E+  L GE ME  G    +P   T+V VL  CA+ +++ +GK  H +  + 
Sbjct: 262 VFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKL 321

Query: 246 KIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305
           ++   L+L NAL DMY+ CG +  A  IF    NK+V+SW  +V G+   G        F
Sbjct: 322 RLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD---THGTF 378

Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365
           D + +        M+ G                    +++ DE TI++ +  C +   L 
Sbjct: 379 DVLRQ--------MLAG------------------GEDVKADEVTILNAVPVCFHESFLP 412

Query: 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA 425
             + +  Y  K +   +  V NA +  Y KCG +  AQRVF  +  K   +W A+I G A
Sbjct: 413 SLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHA 472

Query: 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
            +     SLD   QM  + ++PD  T   +LSAC+    +  G+E
Sbjct: 473 QSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 517



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 119/464 (25%), Positives = 207/464 (44%), Gaps = 51/464 (10%)

Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQN------ALISTYCLCGEVDMARGIF 173
            LL+   +   +E G+++H  V       S  ++N       +I+ Y +CG  D +R +F
Sbjct: 89  LLLQASGKRKDIEMGRKIHQLV-----SGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVF 143

Query: 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM-ERKGVLPTSVTIVLVLSACAKLKDL 232
           D     ++  WNA+ S Y R + +DE  + F EM     +LP   T   V+ ACA + D+
Sbjct: 144 DALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDV 203

Query: 233 DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGY 292
            +G   H  V +  +V ++ + NAL   Y   G +  AL++F  +  ++++SW +++  +
Sbjct: 204 GIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVF 263

Query: 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352
            + G             E  ++L   M++                E       PD  T+V
Sbjct: 264 SDNG-----------FSEESFLLLGEMME----------------ENGDGAFMPDVATLV 296

Query: 353 SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK 412
           ++L  CA    + LG+ V  +  K ++  ++ + NAL+DMY KCG +  AQ +F+    K
Sbjct: 297 TVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNK 356

Query: 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS--IIPDEVTYVGVLSACTHTGMVDEGRE 470
           +  +W  M+ G +  G    + D+  QML     +  DEVT +  +  C H   +   +E
Sbjct: 357 NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKE 416

Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRV 529
                +++     NE      V    + G L+ A  V   +  K  NS  W AL+G    
Sbjct: 417 LHC-YSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS--WNALIGGHAQ 473

Query: 530 HRDAEMAEMAAKQ--ILELDPDNEAVYVLLCNIYAACNRWDNFR 571
             D  ++  A  Q  I  L PD+  V    C++ +AC++  + R
Sbjct: 474 SNDPRLSLDAHLQMKISGLLPDSFTV----CSLLSACSKLKSLR 513


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/619 (36%), Positives = 346/619 (55%), Gaps = 29/619 (4%)

Query: 104 LDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163
           + +L  +  P   T+  L+       ++     +H H+L  G D   F+   LI  Y   
Sbjct: 66  IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDL 125

Query: 164 GEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223
           G VD AR +FD + K  +  WNA+F         +E   L+ +M R GV     T   VL
Sbjct: 126 GSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVL 185

Query: 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI 283
            AC                 EC +  N +++    +++A     G++  ++         
Sbjct: 186 KACV--------------ASECTV--NHLMKG--KEIHAHLTRRGYSSHVY--------- 218

Query: 284 SWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QT 341
             T +V  Y   G VD A   F  MP R+ V W+AMI  Y +  +  EAL  FREM  +T
Sbjct: 219 IMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRET 278

Query: 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401
            +  P+  T+VS+L ACA+L ALE G+ +  YI +  + + + V +AL+ MY +CG +E 
Sbjct: 279 KDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEV 338

Query: 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461
            QRVF  M  +D  +W ++I    ++G+G K++ +F +ML     P  VT+V VL AC+H
Sbjct: 339 GQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSH 398

Query: 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
            G+V+EG+  F  M   HGI+P   HY CMVDLLGRA  L+EA +++++M  +P   VWG
Sbjct: 399 EGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWG 458

Query: 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581
           +LLG+CR+H + E+AE A++++  L+P N   YVLL +IYA    WD  + +++++  RG
Sbjct: 459 SLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRG 518

Query: 582 IKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVG 641
           ++K PG   +E+   ++ FV+ D+ +P  ++I+  L ++  D+K  GY+P    V  ++ 
Sbjct: 519 LQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELE 578

Query: 642 EEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVR 701
            E+KER V  HSEKLA+AFGLI++  G  IRI KNLR+C DCH   K +S   ++E++VR
Sbjct: 579 TEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVR 638

Query: 702 DKTRFHHFKHGSCSCKDYW 720
           D  RFH FK+G CSC DYW
Sbjct: 639 DVNRFHRFKNGVCSCGDYW 657



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 203/434 (46%), Gaps = 43/434 (9%)

Query: 5   SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
           S  S PS  T E  LI       S+    ++H   +  G   +P +  KL+    S+ G 
Sbjct: 70  SQESSPSQQTYEL-LILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMY-SDLGS 127

Query: 65  MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL-IYLDMLKSDVRPDNYTFPFLLK 123
           + YA KVF K  + ++ +WN + +  + +  H   VL +Y  M +  V  D +T+ ++LK
Sbjct: 128 VDYARKVFDKTRKRTIYVWNALFRALT-LAGHGEEVLGLYWKMNRIGVESDRFTYTYVLK 186

Query: 124 G-FTRDIAVEF---GKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
                +  V     GKE+H H+ + G+ S V++   L+  Y   G VD A  +F      
Sbjct: 187 ACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR 246

Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEM--ERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           +VV+W+AM + Y +  +  E  + F EM  E K   P SVT+V VL ACA L  L+ GK 
Sbjct: 247 NVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKL 306

Query: 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQ 297
            H Y+    +   L + +AL  MY  CG++     +F  + ++DV+SW ++++ Y     
Sbjct: 307 IHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSY----- 361

Query: 298 VDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357
                                 + GY      ++A+ +F EM  +   P   T VS+L A
Sbjct: 362 ---------------------GVHGY-----GKKAIQIFEEMLANGASPTPVTFVSVLGA 395

Query: 358 CANLGALELGEWV-KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKF 415
           C++ G +E G+ + +T    + +K  I     ++D+  +   +++A ++ ++M       
Sbjct: 396 CSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPK 455

Query: 416 TWTAMIVGLAINGH 429
            W +++    I+G+
Sbjct: 456 VWGSLLGSCRIHGN 469



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 109/267 (40%), Gaps = 46/267 (17%)

Query: 1   MFSNSSISPPSTLTQETPLISPIETCESMHQLKQ---IHSQTIKLGLLTNPTVQNKLVTF 57
           M   +  S P+++T    ++S ++ C S+  L+Q   IH   ++ GL +   V + LVT 
Sbjct: 274 MMRETKDSSPNSVT----MVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTM 329

Query: 58  CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT 117
                G ++   +VF ++    V  WN++I  Y      K  + I+ +ML +   P   T
Sbjct: 330 Y-GRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVT 388

Query: 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177
           F  +L   + +  VE GK L        F++                   M R   D   
Sbjct: 389 FVSVLGACSHEGLVEEGKRL--------FET-------------------MWR---DHGI 418

Query: 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237
           K  +  +  M     R  + DE  K+  +M  +   P       +L +C    ++++ +R
Sbjct: 419 KPQIEHYACMVDLLGRANRLDEAAKMVQDMRTE---PGPKVWGSLLGSCRIHGNVELAER 475

Query: 238 AHR--YVKECKIVPNLILENALTDMYA 262
           A R  +  E K   N +L   L D+YA
Sbjct: 476 ASRRLFALEPKNAGNYVL---LADIYA 499


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/609 (36%), Positives = 346/609 (56%), Gaps = 32/609 (5%)

Query: 105 DMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCG 164
           D+  S +  D   +  LLK  T    +  G+ +H H+L+  F   + + N L++ Y  CG
Sbjct: 50  DLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG 109

Query: 165 EVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224
            ++ AR +F+   + D VTW  + SGY +  +  +    F +M R G  P   T+  V+ 
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIK 169

Query: 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVIS 284
           A A  +    G + H +  +C    N+ + +AL D+Y   G M                 
Sbjct: 170 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM----------------- 212

Query: 285 WTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
                         D A+  FD +  R+ V W A+I G+ R +   +AL LF+ M     
Sbjct: 213 --------------DDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGF 258

Query: 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404
           RP  F+  S+  AC++ G LE G+WV  Y+ K+  K   F GN L+DMY K G +  A++
Sbjct: 259 RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARK 318

Query: 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464
           +F  + ++D  +W +++   A +G G +++  F +M R  I P+E++++ VL+AC+H+G+
Sbjct: 319 IFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGL 378

Query: 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALL 524
           +DEG  Y+ ++  + GI P   HY  +VDLLGRAG LN AL  I+ MP++P + +W ALL
Sbjct: 379 LDEGWHYY-ELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437

Query: 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
            ACR+H++ E+   AA+ + ELDPD+   +V+L NIYA+  RW++   +R+ + + G+KK
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497

Query: 585 TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED 644
            P CS +E+   +H FVA D+ HPQ +EI  K +E+ + +K +GY+PD S V + V +++
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 557

Query: 645 KERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKT 704
           +E  +  HSEK+A+AF L+++ PG TI I KN+R+C DCH   KL S V  RE+IVRD  
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617

Query: 705 RFHHFKHGS 713
           RFHHFK  S
Sbjct: 618 RFHHFKDAS 626



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 172/360 (47%), Gaps = 32/360 (8%)

Query: 63  GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
           G ++ A KVF K+P+     W T+I GYS+ D   + +L +  ML+    P+ +T   ++
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168

Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
           K    +     G +LH   +K GFDS+V V +AL+  Y   G +D A+ +FD     + V
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 228

Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
           +WNA+ +G+ R    ++  +LF  M R G  P+  +   +  AC+    L+ GK  H Y+
Sbjct: 229 SWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYM 288

Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
            +          N L DMYA  G +  A +IF  +  +DV+SW +++T Y   G      
Sbjct: 289 IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHG------ 342

Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
             F                        +EA+  F EM+   IRP+E + +S+LTAC++ G
Sbjct: 343 --FG-----------------------KEAVWWFEEMRRVGIRPNEISFLSVLTACSHSG 377

Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMI 421
            L+ G      + K+ +  + +    ++D+  + GD+ +A R   EM +      W A++
Sbjct: 378 LLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437



 Score = 39.7 bits (91), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 32/163 (19%), Positives = 71/163 (43%), Gaps = 2/163 (1%)

Query: 29  MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIK 88
           + Q K +H+  IK G        N L+    ++ G +  A K+F ++ +  V  WN+++ 
Sbjct: 278 LEQGKWVHAYMIKSGEKLVAFAGNTLLDMY-AKSGSIHDARKIFDRLAKRDVVSWNSLLT 336

Query: 89  GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS 148
            Y++    K  V  + +M +  +RP+  +F  +L   +    ++ G   +  + K G   
Sbjct: 337 AYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVP 396

Query: 149 SVFVQNALISTYCLCGEVDMA-RGIFDVSYKDDVVTWNAMFSG 190
             +    ++      G+++ A R I ++  +     W A+ + 
Sbjct: 397 EAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNA 439


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/606 (36%), Positives = 343/606 (56%), Gaps = 32/606 (5%)

Query: 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174
           +Y +  LL+      A+  GK+LH      G   +  +   L+  Y +   +  AR +FD
Sbjct: 47  HYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFD 106

Query: 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234
              K ++  WN +  GY      D    L+ +M   G+ P + T+  VL AC+ L  +  
Sbjct: 107 KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGE 166

Query: 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN 294
           G+  H YV +     +L +  AL DMYA CG +                         ++
Sbjct: 167 GRSIHEYVIKSGWERDLFVGAALIDMYAKCGCV-------------------------MD 201

Query: 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354
            G+V      FD++  RD VLW +M+  Y +     E+++L REM  + +RP E T+V++
Sbjct: 202 AGRV------FDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTV 255

Query: 355 LTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414
           +++ A++  L  G  +  +  ++  +++  V  ALIDMY KCG V+ A  +F  +  K  
Sbjct: 256 ISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRV 315

Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474
            +W A+I G A++G    +LD+F +M R    PD +T+VGVL+AC+   ++DEGR  +  
Sbjct: 316 VSWNAIITGYAMHGLAVGALDLFDKM-RKEDRPDHITFVGVLAACSRGRLLDEGRALYNL 374

Query: 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAE 534
           M   +GI P   HY CM+DLLG  G L+EA ++I+NM +KP+S VWGALL +C++H + E
Sbjct: 375 MVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVE 434

Query: 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN 594
           +AE+A ++++EL+PD+   YV+L N+YA   +W+   +LRQ+++D+ IKK   CS IE+ 
Sbjct: 435 LAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVK 494

Query: 595 GVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
             V+ F+AGD SH  +  IY +L  +   +   GY PD   VF DV E++K   V  HSE
Sbjct: 495 NKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSE 554

Query: 655 KLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSC 714
           +LA+AFGLIS+ PG  + I KNLR+C DCH   K +S + +RE+ VRD  R+H FKHG C
Sbjct: 555 RLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMC 614

Query: 715 SCKDYW 720
           SC D+W
Sbjct: 615 SCGDHW 620



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/479 (29%), Positives = 222/479 (46%), Gaps = 37/479 (7%)

Query: 10  PSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYAC 69
           P+T    T L+      ++++  KQ+H+Q   LG+  N  +  KLV         +  A 
Sbjct: 44  PTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLN-AR 102

Query: 70  KVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129
            +F KIP+ ++ LWN +I+GY+    H N +++Y  ML   +RPDN+T PF+LK  +   
Sbjct: 103 NLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALS 162

Query: 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFS 189
           A+  G+ +H +V+K G++  +FV  ALI  Y  CG V  A  +FD     D V WN+M +
Sbjct: 163 AIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLA 222

Query: 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249
            Y +    DE+  L  EM   GV PT  T+V V+S+ A +  L  G+  H +        
Sbjct: 223 AYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQS 282

Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309
           N  ++ AL DMYA CG +  AL +F  ++ K V+SW AI+TGY   G    A   FD+M 
Sbjct: 283 NDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMR 342

Query: 310 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEW 369
           + D                                RPD  T V +L AC+    L+ G  
Sbjct: 343 KED--------------------------------RPDHITFVGVLAACSRGRLLDEGRA 370

Query: 370 VKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAIN 427
           +   + ++  +   +     +ID+   CG +++A  + R M ++ D   W A++    I 
Sbjct: 371 LYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKI- 429

Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA 486
            HG+  L   +      + PD+     +L+         EG E    + I   I+ N A
Sbjct: 430 -HGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIA 487


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,095,308,565
Number of Sequences: 23463169
Number of extensions: 463204277
Number of successful extensions: 1238695
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9766
Number of HSP's successfully gapped in prelim test: 2650
Number of HSP's that attempted gapping in prelim test: 999263
Number of HSP's gapped (non-prelim): 65681
length of query: 720
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 570
effective length of database: 8,839,720,017
effective search space: 5038640409690
effective search space used: 5038640409690
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)